Trait Gene Id	CGSNL Gene Symbol	Gene symbol synonym(s)	CGSNL Gene Name	Gene name synonym(s)	Protein Name	Allele	Chromosome No.	Explanation	Trait Class	RAP ID	MUS ID	Gramene ID	Arm	Locate(cM)	Gene Ontology	Trait Ontology	Plant Ontology
1	[CMS-54257]	[cms-54257]*, [cms-54257]	CYTOPLASMIC MALE STERILITY 54257	Cytoplasmic mutant induced by somaclonal variation				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060167			GO:0000001 - mitochondrion inheritance, GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009066 - anther 
2	[CMS-AK]([CMS-JP])	[cms-ak]([cms-jp]), [cms-jp], [cms-ak]	CYTOPLASMIC MALE STERILITY AK	Akebono' cytoplasm, 'Akebono' cytoplasm				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060144			GO:0000001 - mitochondrion inheritance, GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009066 - anther 
3	[CMS-ARC]	[cms-ARC]*, [cms-ARC] [mt], [cms-ARC]	CYTOPLASMIC MALE STERILITY ARC	ARC13829-16 cytoplasm, `ARC13829-26' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060145			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
4	[CMS-BO]	[cms-bo]	CYTOPLASMIC MALE STERILITY BO	Chinsurah boro II' cytoplasm, `Chinsurah boro 2' cytoplasm, 'Chinsurah boro II' cytoplasm			Mt	PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage. X52160 (urf-rmc, chimeric atp6).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060146			GO:0007275 - multicellular organismal development, GO:0005739 - mitochondrion	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
5	[CMS-CW]	[cms-CW]	CYTOPLASMIC MALE STERILITY CW	Chinese wild rice cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060147			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
6	[CMS-GAM]	[cms-GAM]*, [cms-GAM]	CYTOPLASMIC MALE STERILITY GAM	Gambiaca cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060151			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
7	[CMS-HL]	[cms-HL]	CYTOPLASMIC MALE STERILITY HL	HL group cytoplasm, HL-group cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060152			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
8	[CMS-IR66707A]	[cms-IR66707A]*, [cms-IR66707A]	CYTOPLASMIC MALE STERILITY IR66707A	Oryza perennis Acc104823 cytoplasm, Oryza perennis Acc. 104823 cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060153			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
9	[CMS-KALINGA-I]	[cms-Kalinga-I]*, [cms-Kalinga-I]	CYTOPLASMIC MALE STERILITY KALINGA	Cytoplasmic controlled cold tolerance				PO:0006452; microspore (sensu Poaceae) ; PO:0009006; shoot ; PO:0009005; root ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage ; GRO:0007047; 02-seedling. Kalinga I cytoplasm.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060154			GO:0009409 - response to cold, GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza), TO:0000303 - cold tolerance, TO:0000280 - seedling vigor	PO:0009082 - spikelet floret , PO:0020048 - microspore , PO:0009005 - root , PO:0009006 - shoot system 
10	[CMS-KHIABORO]	[cms-Khiaboro]*, [cms-Khiaboro]	CYTOPLASMIC MALE STERILITY KHIABORO	'Khiaboro' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060155			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
11	[CMS-ID]	[cms-ld]	CYTOPLASMIC MALE STERILITY ID	Lead rice' cytoplasm, 'Lead rice' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060156			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
12	[CMS-SP]	[cms-sp]*, [cms-sp]	CYTOPLASMIC MALE STERILITY SP	MS577A cytoplasm, `MS577A' cytoplasm, 'MS577A' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060158			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
13	[CMS-TA]	[cms-TA]	CYTOPLASMIC MALE STERILITY TA	TA820' cytoplasm, `TA820' cytoplasm, 'TA820' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060159			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
14	[CMS-UR102]	[cms-UR102]*, [cms-UR102]	CYTOPLASMIC MALE STERILITY UR102	UR102F' cytoplasm, `UR102F' cytoplasm, 'UR102F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060162			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
15	[CMS-UR104]	[cms-UR104]*, [cms-UR104]	CYTOPLASMIC MALE STERILITY UR104	UR104F' cytoplasm, `UR104F' cytoplasm, 'UR104F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060163			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
16	[CMS-UR106]	[cms-UR106]*, [cms-UR106]	CYTOPLASMIC MALE STERILITY UR106	UR106F' cytoplasm, `UR106F' cytoplasm, 'UR106F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060164			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
17	[CMS-UR27]	[cms-UR27]*, [cms-UR27]	CYTOPLASMIC MALE STERILITY UR27	UR27F' cytoplasm, `UR27F' cytoplasm, 'UR27F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060160			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
18	[CMS-UR89]	[cms-UR89]*, [cms-UR89]	CYTOPLASMIC MALE STERILITY UR89	UR89F' cytoplasm, `UR89F' cytoplasm, 'UR89F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060161			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
19	[CMS-WA]	[cms-WA]	CYTOPLASMIC MALE STERILITY WA	WA group cytoplasm, WA-group cytoplasm				"PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.WA derived from \"wild abortive\", a wild sterile plant found in Hainan Island, China."	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060166			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
20	ACEF1	Ac ef1, Acef1	ACCELERATION OF HEADING EF 1	Acceleration of heading (ef1), Acceleration of heading (fl21)				A few days earlier heading than ef1 line when AC ef1 is combined with ef1. PO:0009049; inflorescence. GRO:0007044; 06-heading stage.	 Reproductive organ - Heading date			GR:0060003			GO:0003700 - transcription factor activity	TO:0000137 - days to heading	PO:0009049 - inflorescence 
21	ACP3	Acp3	ACID PHOSPHATASE 3	Acid phosphatase3, Acid phosphatase 3, Acid phosphatase-3	ACID PHOSPHATASE 3			L(ST=C). Variant is known only in wild taxa.	 Biochemical character			GR:0060008			GO:0003993 - acid phosphatase activity		
22	AE1	ae1	AMYLOSE EXTENDER 1	amylose extender1, amylose extender 1, amylose extender-1				High amylose mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060016			GO:0000271 - polysaccharide biosynthetic process, GO:0007275 - multicellular organismal development	TO:0000587 - endosperm quality, TO:0000098 - glutinous endosperm, TO:0000196 - amylose content, TO:0000487 - endosperm color	PO:0009089 - endosperm 
23	AE2	ae2(t), ae2	AMYLOSE EXTENDER 2	amylose extender2, amylose extender 2, amylose extender-2				High amylose content (more than 30%) in white-cored grain.  This mutant was induced by the gamma rays. [RGN4:4]. High amylose mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060017			GO:0000271 - polysaccharide biosynthetic process, GO:0007275 - multicellular organismal development	TO:0000196 - amylose content, TO:0000587 - endosperm quality, TO:0000487 - endosperm color, TO:0000098 - glutinous endosperm	PO:0009089 - endosperm 
24	AGR1	agr1*, agr1	AGRAVITROPISM 1	agravitropism1, agravitropism 1, agravitropism-1				PO:0009009; embryo ; PO:0009005; root ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007043; 01-germination.	 Seed - Morphological traits - Embryo			GR:0060019			GO:0009630 - gravitropism, GO:0007275 - multicellular organismal development, GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development	TO:0000419 - leaf anatomy and morphology trait, TO:0000043 - root anatomy and morphology trait, TO:0000064 - embryo related trait	PO:0009005 - root , PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
25	AM	Am(t)*, Am	HIGH AMYLOSE	High amylose				PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060035			GO:0016051 - carbohydrate biosynthetic process	TO:0000196 - amylose content, TO:0000098 - glutinous endosperm	PO:0009089 - endosperm 
26	ANA	Ana*	AWN DEVELOPMENT A	Awn development-a				AWN DEVELOPMENT, Awn development. PO:0009010; seed ; PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060053			GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000072 - awn length	PO:0006032 - lemma awn , PO:0009010 - seed 
27	ANB	Anb*	AWN DEVELOPMENT B	Awn development-b				AWN DEVELOPMENT, Awn development. PO:0009009; embryo ; PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060054			GO:0007275 - multicellular organismal development	TO:0000072 - awn length, TO:0000146 - seed length	PO:0006032 - lemma awn , PO:0009009 - plant embryo 
28	AO	ao	ACCERELATED INTERNODE OVERGROWTH	accerelated overgrowth of internode (Awa-odori), accerelated overgrowth of internode				Extreme extension of internode and leaf blade at the vegetative and reproductive stages. No ear formation. [RGN11:9]. PO:0020142; stem internode ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007148; 05-booting stage ; GRO:0007047; 02-seedling.	 Vegetative organ - Culm			GR:0060056			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000152 - panicle number, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000089 - panicle type, TO:0000145 - internode length	PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0020142 - stem internode 
29	APD1	apd1, apd1*	APICAL DISPLACEMENT 1	apical displacement1, apical displacement 1, apical displacement-1		apd1-1		Positions of both shoot and root in an embryo are displaced to the apex of embryo compared with those of the wild type.Only one mutant allele, apd1-1, has been identified.In a recessive allele, position of shoot meristem is displaced toward the embryo apex due to underdevelopment of scutellum. Multiple radicles are formed.Taichung 65. PO:0009047; stem ; PO:0009009; embryo ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Embryo			GR:0060057			GO:0009790 - embryonic development, GO:0009826 - unidimensional cell growth, GO:0009653 - anatomical structure morphogenesis, GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000492 - leaf shape, TO:0000064 - embryo related trait, TO:0000576 - stem length, TO:0000370 - leaf width	PO:0009009 - plant embryo , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
30	AS	as	ASYNAPSIS 1	asynapsis1, asynapsis 1, asynapsis					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060062			GO:0007129 - synapsis		
31	BC6	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88	BRITTLE CULM 6	Brittle culm6, Brittle culm 6, Brittle culm-6, Cellulose synthase A catalytic subunit 9 [UDP-forming], Cellulose synthase A catalytic subunit 9	CELLULOSE SYNTHASE A9	cesa9, Bc6, bc6, Osfc16, bc88	9	LOC_Os09g25490. Induced from IR68 by EMS treatment. CELLULOSE SYNTHASE CATALYTIC SUBUNIT. AB527075. EC=2.4.1.12 A2Z1C8(indica). Q69P51(japonica).GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association. lodging resistance. GO:1901698: response to nitrogen compound. BC88 in Rao et al. 2013. TO:0000993: cellulose content	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os09g0422500 	LOC_Os09g25490.1	GR:0060073			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009531 - secondary cell wall, GO:0016021 - integral to membrane, GO:0005515 - protein binding, GO:0007047 - cell wall organization, GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0009610 - response to symbiotic fungus, GO:0009808 - lignin metabolic process, GO:0009834 - secondary cell wall biogenesis, GO:0016020 - membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0031225 - anchored to membrane, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0010410 - hemicellulose metabolic process, GO:0006950 - response to stress, GO:0009642 - response to light intensity, GO:0048573 - photoperiodism, flowering	TO:0000061 - node shattering, TO:0000051 - stem strength, TO:0000108 - leaf shattering, TO:0000168 - abiotic stress trait, TO:0000011 - nitrogen sensitivity, TO:0000460 - light intensity sensitivity, TO:0000346 - tiller number, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000227 - root length, TO:0000557 - secondary branch number	PO:0025025 - root system , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009047 - stem 
32	BD2	bd2	BEAKED LEMMA 2	beaked lemma2, beaked lemma 2, beaked lemma-2				The tip of lemma bends as beak shape. Duplicate gene with bd1. PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060075			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea 
33	BF	Bf	BROWN FURROWS OF HULL	Brown furrows of hull				The part of interveins (furrows) of floral glumes is colored brown. [298] PO:0009047; stem ; PO:0009039; glume ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Coloration - Others			GR:0060077			GO:0043473 - pigmentation	TO:0000264 - lemma and palea color, TO:0000287 - brown rice shape, TO:0000056 - stem color	PO:0009039 - glume , PO:0009047 - stem , PO:0009088 - seed coat 
34	BHA	Bha(Bh1), Bha, Bh1	BLACK HULL A	Black hull-a, Black hull-1				Black ripening color of floral glumes.  Complementary action of three genes, Bha, Bhb, and Bhc. PO:0009039; glume ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Coloration - Others			GR:0060079			GO:0043473 - pigmentation	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color	PO:0009039 - glume , PO:0009088 - seed coat 
35	BHB	Bhb(Bh2), Bhb, Bh2	BLACK HULL B	Black hull-b, Black hull-2				Black ripening color of floral glumes.  Complementary action of three genes, Bha, Bhb, and Bhc. PO:0009039; glume ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Coloration - Others			GR:0060080			GO:0043473 - pigmentation	TO:0000190 - seed coat color, TO:0000264 - lemma and palea color	PO:0009039 - glume , PO:0009088 - seed coat 
36	BL5	bl5	BROWN LEAF SPOT 5	brown leaf spot5, brown leaf spot 5, brown leaf spot-5				Small brown speckles with the size of sesame seed appear on leaf baldes. [499] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060086			GO:0015996 - chlorophyll catabolic process	TO:0000326 - leaf color, TO:0000069 - variegated leaf, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
37	BL6	bl6	BROWN LEAF SPOT 6	brown leaf spot6, brown leaf spot 6, brown leaf spot-6				Relatively large brown spots appear on leaves. [499] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060087			GO:0015996 - chlorophyll catabolic process	TO:0000069 - variegated leaf, TO:0000326 - leaf color, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
38	BPH5	bph5	BROWN PLANTHOPPER RESISTANCE 5	brown planthopper resistance 5, brown planthopper resistance-5				PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060093			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
39	BPH6	Bph6	BROWN PLANTHOPPER RESISTANCE 6	brown planthopper resistance 6, Brown planthopper resistance-6			4	LOC_Os04g35210. KX818197 (cDNA, indica, cultivar Swarnalata), KX818198 (genomic, indica, cultivar Swarnalata). Gene Expression Omnibus (GEO) under accession code GSE86379. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Bph6 was finally located in a region bordered by the STS markers Y19 and Y9; the corresponding region is 25-kb on BAC clone OSJNBa0084A10 of Nipponbare. We observed that there were many differences in the deduced amino acid sequences encoded by Bph6 in Swarnalata and Nipponbare (Guo et al. 2018). GO:2000031: regulation of salicylic acid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Insect resistance	Os04g0431700	LOC_Os04g35210.1	GR:0060094			GO:0000145 - exocyst, GO:0080036 - regulation of cytokinin mediated signaling, GO:0009625 - response to insect, GO:0009736 - cytokinin mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0045921 - positive regulation of exocytosis	TO:0000424 - brown planthopper resistance, TO:0000205 - white-backed planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
40	BPH7	bph7	BROWN PLANTHOPPER RESISTANCE 7	brown planthopper resistance 7, brown planthopper resistance-7			12	PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. The BPH7 gene is located on the long arm of chromosome 12 between simple sequence repeat markers markers RM3448 and RM313. KU221258 (Indica).	 Tolerance and resistance - Insect resistance			GR:0060095			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
41	BPH8	bph8	BROWN PLANTHOPPER RESISTANCE 8	brown planthopper resistance 8, brown planthopper resistance-8				Brown planthopper resistance. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060096			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
42	BPH9	Bph9, BPH9/26	BROWN PLANTHOPPER RESISTANCE 9	brown planthopper resistance 9, Brown planthopper resistance-9			12	Brown planthopper resistance. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling. KU216220, KU216221 (Indica). GO:0080151: positive regulation of salicylic acid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway. BPH9 is allelic to BPH26 (Zhao et al. 2016). a nucleotide-binding and leucine-rich repeat (NLR)-containing protein. PH9 (KU216220) = LOC_Os12g37290 in Kamolsukyeunyong et al. 2019.	 Tolerance and resistance - Insect resistance			GR:0060097			GO:0009625 - response to insect, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0043531 - ADP binding	TO:0000424 - brown planthopper resistance, TO:0000172 - jasmonic acid sensitivity	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
43	BSV	Bsv(Bs), Bs, Bsv	BLACK STREAKED DWARF RESISTANCE	Black streaked dwarf resistance				Dominant gene. Resistant to black streaked dwarf disease (viral disease transmitted by Small Brown Planthopper, Laodelphax striatellus). PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060103			GO:0009615 - response to virus	TO:0000020 - black streak dwarf virus resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
44	BZS	bzs, bol	BENTAZON SUSCEPTIBILITY	bentazon susceptibility				Susceptible to the herbicide bentazon to which the rice is tolerant normally. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Stress tolerance			GR:0060105			GO:0009635 - response to herbicide	TO:0000058 - herbicide sensitivity	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
45	CE	Ce, Ce1, Ce2	CERCOSPORA RESISTANCE	Cercospora resistance, Cercospora resistance-1, Cercospora resistance-2				PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060116			GO:0009620 - response to fungus	TO:0000422 - narrow brown leaf spot disease resistance	PO:0009025 - vascular leaf 
46	CG	cg*, cg	CIGER SHAPED PANICLE	ciger shaped panicle				PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060117			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000146 - seed length, TO:0000391 - seed size, TO:0000089 - panicle type	PO:0009010 - seed , PO:0009047 - stem , PO:0009049 - inflorescence 
47	CHS2	chs2(t)*, chs2	CHLOROSIS CAUSED BY LOW TEMPERATURE 2	chlorosis caused by low temperature2, chlorosis caused by low temperature 2, chlorosis caused by low temperature-2		chs2-B, chs2-C		chlorosis caused by low temperature (17C). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060130			GO:0015994 - chlorophyll metabolic process, GO:0015995 - chlorophyll biosynthetic process, GO:0009409 - response to cold	TO:0000299 - leaf lamina color, TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
48	CHS3	chs3(t)*, chs3	CHLOROSIS CAUSED BY LOW TEMPERATURE 3	chlorosis caused by low temperature3, chlorosis caused by low temperature 3, chlorosis caused by low temperature-3				chlorosis caused by low temperature (17C). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060131			GO:0015995 - chlorophyll biosynthetic process, GO:0009409 - response to cold, GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content, TO:0000432 - temperature response trait, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
49	CHS4	chs4(t)*, chs4	CHLOROSIS CAUSED BY LOW TEMPERATURE 4	chlorosis caused by low temperature4, chlorosis caused by low temperature 4, chlorosis caused by low temperature-4				chlorosis caused by low temperature (15C). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060132			GO:0015994 - chlorophyll metabolic process, GO:0009409 - response to cold, GO:0015995 - chlorophyll biosynthetic process	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
50	CHT4	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3	CHITINASE 4	Chitinase4, Chitinase IIb, Chitinase 4, Pathogenesis related (PR)-3 chitinase 4, Chitinase-4, PR-3 CLASS IV CHITINASE, Chitinase-4(novel type)	CHITINASE 4		4	EC=3.2.1.14 PR-3 chitinase. pathogenesis related 3 chitinase. O04138. D47304, C19108, AB054687. CHIT2 in Liu et al. 2018. OsPR3  in Chen et al. 2018.	 Biochemical character	Os04g0493400	LOC_Os04g41620.1	GR:0060136			GO:0004568 - chitinase activity, GO:0006032 - chitin catabolic process, GO:0006952 - defense response, GO:0008061 - chitin binding, GO:0051707 - response to other organism, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016998 - cell wall macromolecule catabolic process		
51	CIM	cinm*, CINM, cim, cinm	CROSS-INCOMPATIBILITY REACTIONS IN THE MALE	cross-incompatibility carried by T65wx		cim, Cim	6	Cross-incompatibility carried by T65wx. PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060140			GO:0009856 - pollination, GO:0009566 - fertilization	TO:0000035 - incompatibility trait	PO:0009082 - spikelet floret 
52	CLE1	cle*, cle1	CLUB-SHAPED EMBRYO 1	club-shaped embryo1, club-shaped embryo 1, club-shaped embryo-1		cle1-1, cle1-2, cle1-3, cle1-4, cle1-5		This gene produces undifferentiated minute club-shaped embryos. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060142			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
53	CLW	clw	CLAW SHAPED SPIKELET	claw shaped spikelet				The palea grows short such as being covered by lemma, showing claw shaped expression. [499] PO:0009038; palea ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060143			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009037 - lemma , PO:0009038 - palea 
54	CNX1	cnx1*, cnx1, cnx 1	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  1	molybden cofactor1, molybden cofactor 1, molybdenum cofactor for nitrate reductase-1, cofactor for nitrate reductase and xanthine dehydrogenase 1	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1			Molybdenum cofactor (MoCo) is deficient. Nitrate reductase (NR) activity is considerably low compared to the wild type. Addition of molybdate recovers NR activity to that of the wild type level. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Biochemical character			GR:0060170			GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0016163 - nitrogenase activity, GO:0016612 - molybdenum-iron nitrogenase complex		PO:0009006 - shoot system , PO:0009025 - vascular leaf 
55	CNX2	cnx2*, cnx2, cnx 2	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  2	molybden cofactor2, molybden cofactor 2, molybdenum cofactor for nitrate reductase-2, cofactor for nitrate reductase and xanthine dehydrogenase 2	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  2			Molybdenum cofactor (MoCo) is deficient. Activity of nitrate reductase is considerably low compared to its wild type. Addition of molybdate does not recover the activity. This gene is located between RFLP markers C513 and C377 on the long arm of chromosome 4. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Biochemical character			GR:0060171			GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0016163 - nitrogenase activity, GO:0016612 - molybdenum-iron nitrogenase complex		PO:0009006 - shoot system , PO:0009025 - vascular leaf 
56	CNX3	cnx3*, cnx3, cnx 3	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  3	molybden cofactor3, molybden cofactor 3, molybdenum cofactor for nitrate reductase-3, cofactor for nitrate reductase and xanthine dehydrogenase 3	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  3			Molybdenum cofactor (MoCo) deficient mutant. Activity of nitrate reductase and xanthine dehydrogenase is considerably lower than in the wild type. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Biochemical character			GR:0060172			GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0016163 - nitrogenase activity, GO:0016612 - molybdenum-iron nitrogenase complex		PO:0009006 - shoot system , PO:0009025 - vascular leaf 
57	CPS	cps	COMPACT PANICLE STERILE	compact panicle sterile				PO:0009036; lodicule ; PO:0006384; gynoecium (sensu Poaceae) ; PO:0009038; palea ; PO:0006457; ovule (sensu Poaceae) ; PO:0009037; lemma ; PO:0006442; anther (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Other sterilities			GR:0060174			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000436 - spikelet sterility, TO:0000485 - sterility related trait, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009062 - gynoecium , PO:0009066 - anther , PO:0020003 - plant ovule , PO:0009036 - lodicule , PO:0009037 - lemma , PO:0009038 - palea 
58	CTB	Ctb*, Ctb, Ctb1	COLD TOLERANCE AT THE BOOTING STAGE	Cold tolerance at the booting stage, Cold tolerance at booting stage-1				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060177			GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
59	CTS1	Cts1	COLD TOLERANCE AT SEEDLING STAGE 1	Cold tolerance at seedling stage1, Cold tolerance at seedling stage 1, Cold tolerance at seedling stage-1				Cold tolerance was examined with 10-day old seedlings to cold water temperature (12C) for 10 days. dominant gene. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060178			GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
60	CTS2	Cts2(t), Cts2	COLD TOLERANCE AT SEEDLING STAGE 2	Cold tolerance at seedling stage2, Cold tolerance at seedling stage 2, Cold tolerance at seedling stage-2				Tolerance to chilling injury of young (12 days old) seedling expressed at 5C for 4 days.Without this gene, whole leaf blade and leaf sheath become withered and dead. PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Stress tolerance			GR:0060179			GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009025 - vascular leaf 
61	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9	DWARF YUKARA DWARF OR FUKEI 71	yukara dwarf or fukei 71 dwarf, dwarf-12, DWARF50	INOSITOL POLYPHOSPHATE 5-PHOSPHATASE	F71(d50)(japonica), d12, d32, DMT9(japonica)	2	This gene remarkably shortens the internodes at and below the third one, increasing lodging resistance and protecting from cool weather with a shallower irrigation water. Flag leaves are erect. PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage.D50 gene,  encoding inositol polyphosphate 5-phosphatase, is required for development of intercalary meristem. (2012) AB571989.	 Vegetative organ - Culm	Os02g0477700	LOC_Os02g27620.2, LOC_Os02g27620.1	GR:0060194			GO:0009826 - unidimensional cell growth, GO:0009266 - response to temperature stimulus, GO:0009832 - plant-type cell wall biogenesis	TO:0000145 - internode length, TO:0000207 - plant height, TO:0000432 - temperature response trait, TO:0000303 - cold tolerance, TO:0000068 - lodging incidence, TO:0000576 - stem length, TO:0000124 - flag leaf angle	PO:0009047 - stem 
62	D13	d13, dwf12	DWARF SHORT GRAINED	short grained dwarf, dwarf-13				Dwarf. Small stout panicle axis and round grains. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed.	 Vegetative organ - Culm			GR:0060195			GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000342 - panicle axis angle, TO:0000576 - stem length, TO:0000391 - seed size, TO:0000089 - panicle type	PO:0009010 - seed , PO:0009047 - stem , PO:0009049 - inflorescence 
63	D17	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17	DWARF SLENDER DWARF, TILLERING	slender dwarf, tillering dwarf, dwarf-17, high-tillering dwarf1, high-tillering dwarf 1, High-Tillering Dwarf1, High-Tillering Dwarf 1, catotenoid dioxygenase 7, carotenoid-cleaving dioxygenase 7, carotenoid cleavage dioxygenase 7, MAX3 ortholog	CATOTENOID DIOXYGENASE 7 	d17, d17-1, d17-2, ccd7, ccd7c1, ccd7c2, ccd7c3, ccd7c4, ccd7c5, ccd7c6, ccd7c7, ccd7c8, ccd7c9, ccd7c10	4	"Similar to \"bunketsu-waito\". Profuse tillering with slender leaves. [10003]  AL663000. Q7XU29. GO:1901601: strigolactone biosynthetic process. LOC_Os04g46470. GO:1901698: response to nitrogen compound."	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity	Os04g0550600	LOC_Os04g46470.1	GR:0060197,GR:0080027			GO:0010223 - secondary shoot formation, GO:0007275 - multicellular organismal development, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0016121 - carotene catabolic process, GO:0009733 - response to auxin stimulus, GO:0009507 - chloroplast, GO:0009735 - response to cytokinin stimulus, GO:0046872 - metal ion binding, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity	TO:0000167 - cytokinin sensitivity, TO:0000180 - spikelet fertility, TO:0000089 - panicle type, TO:0000370 - leaf width, TO:0000576 - stem length, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000492 - leaf shape, TO:0000152 - panicle number, TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity	PO:0004709 - axillary bud , PO:0005001 - basal axillary shoot system , PO:0006023 - bundle sheath , PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009047 - stem 
64	D19	d19(t), dwf16, d19	DWARF KAMIKAWA	kamikawa dwarf, dwarf-19				Short culms and dense panicles with undulate rachis. PO:0009047; stem ; PO:0009049; inflorescence.	 Vegetative organ - Culm			GR:0060199			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000089 - panicle type, TO:0000576 - stem length	PO:0009047 - stem , PO:0009049 - inflorescence 
65	D22	d22(t), dwf19, d22	DWARF JOKEI 6549	jokei 6549 dwarf, dwarf-22				PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed.	 Vegetative organ - Culm			GR:0060202			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000207 - plant height, TO:0000391 - seed size, TO:0000576 - stem length	PO:0009010 - seed , PO:0009047 - stem , PO:0009049 - inflorescence 
66	D23	d23(t), dwf20, d23	DWARF AH-7	ah-7 dwarf, dwarf-23				slender culms with normal grains. PO:0009047; stem ; PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060203			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000132 - basal internode diameter, TO:0000207 - plant height, TO:0000339 - stem thickness	PO:0005005 - shoot internode , PO:0009047 - stem 
67	D24	d24(t), dwf21, d24	DWARF M-7	m-7 dwarf, dwarf-24				Slender and sinuous culms with short grains. PO:0009047; stem ; PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060204			GO:0007275 - multicellular organismal development	TO:0000361 - stem anatomy and morphology trait, TO:0000207 - plant height, TO:0000132 - basal internode diameter, TO:0000391 - seed size, TO:0000576 - stem length	PO:0005005 - shoot internode , PO:0009047 - stem 
68	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A	DWARF TANGINBOZU	tanginbozu dwarf, Tan-Ginbozu, dwarf-35, ent-kaurene oxidase2, cytochrome P450 701A6	ENT-KAURENE OXIDASE-LIKE PROTEIN 2	osko2-1, osko2-2, ko2, ko2-1, ko2-2(d35), d35Tan-Ginboze	6	ent-kaurene oxidase, ENT-KAURENE OXIDASE, KO. PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0020039; leaf lamina ; PO:0009049; inflorescence ; PO:0020122; inflorescence axis. GRO:0007151; 6.1-flowering stage ; GRO:0007139; A-vegetative stage.AY660665. This gene encodes one of the GA metabolic enzymes, ent-kaurene oxidase (K0). It is locasted on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5. EF577644-EF577648 (wild rice species).	 Biochemical character,  Vegetative organ - Culm	Os06g0570100	LOC_Os06g37364.3, LOC_Os06g37364.2, LOC_Os06g37364.1	GR:0060213			GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0009686 - gibberellin biosynthetic process, GO:0009055 - electron carrier activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0010241 - ent-kaurene oxidase activity, GO:0032940 - secretion by cell, GO:0022900 - electron transport chain	TO:0000207 - plant height	PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020122 - inflorescence axis , PO:0020039 - leaf lamina , PO:0020104 - leaf sheath 
69	D49	d49(t)	DWARF REIMEI	reimei dwarf					 Vegetative organ - Culm						GO:0007275 - multicellular organismal development	TO:0000207 - plant height	
70	D59	d59(t), dwf40, d59	DWARF DM107-4	dwarf (DM107-4), dwarf-59				40% shorter in plant height compared with the original variety. Lodging tolerance. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060224			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000068 - lodging incidence, TO:0000576 - stem length	PO:0009047 - stem 
71	DA	Da(D1), Da, D1, Dhl3	DOMINANT LETHAL	Dominant lethal, Dominant lethal-a, Dominant hybrid lethal-3				complementary. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060228			GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
72	DB	Db(D2), D2, Db, Dhl4	DWARFBAMBOO SHOOT 1	Dominant lethal-b, Dominant hybrid lethal-4				Dominant lethal. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060229			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
73	DIA1	Dia1(t)*, Dia1	DIAPHORASE 1	Diaphorase1, Diaphorase 1, Diaphorase-1	DIAPHORASE 1	Dia1-1(t), Dia1-2(t)		L(ST).	 Biochemical character			GR:0060231			GO:0003959 - NADPH dehydrogenase activity, GO:0004148 - dihydrolipoyl dehydrogenase activity		
74	DIA2	Dia2(t)*, Dia2	DIAPHORASE 2	Diaphorase2, Diaphorase 2, Diaphorase-2	DIAPHORASE 2	Dia2-1(t), Dia2-2(t)		L(ST).	 Biochemical character			GR:0060232			GO:0004148 - dihydrolipoyl dehydrogenase activity, GO:0003959 - NADPH dehydrogenase activity		
75	DN2	Dn2	DENSE PANICLE 2	Dense panicle2, Dense panicle 2, Dense panicle-2				PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060236			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000576 - stem length, TO:0000339 - stem thickness, TO:0000484 - seed shape	PO:0009010 - seed , PO:0009047 - stem , PO:0009049 - inflorescence 
76	DN3	dn3	DENSE PANICLE 3	dense panicle3, dense panicle 3, dense panicle-3				Dense panicle caused by the increased number and decreased length of primary rachilla. This mutant bears small panicles less than 5cm with often malformed spikelets like those having long empty glumes, and produces a few adventitious roots at the base of ... PO:0009039; glume ; PO:0009049; inflorescence ; PO:0009037; lemma ; PO:0009038; palea. GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060237			GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000089 - panicle type, TO:0000052 - primary branching of inflorescence, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000142 - secondary branching of inflorescence	PO:0009037 - lemma , PO:0009038 - palea , PO:0009039 - glume , PO:0009049 - inflorescence 
77	DS1	ds1	DESYNAPSIS 1	desynapsis1, desynapsis 1, desynapsis-1					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060249			GO:0007135 - meiosis II		
78	DS10	ds10(t), ds10	DESYNAPSIS 10	desynapsis10, desynapsis 10, desynapsis-10					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060258			GO:0007135 - meiosis II		
79	DS11	ds11(t), ds11	DESYNAPSIS 11	desynapsis11, desynapsis 11, desynapsis-11					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060259			GO:0007135 - meiosis II		
80	DS2	ds2(t), ds2	DESYNAPSIS 2	desynapsis2, desynapsis 2, desynapsis-2					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060250			GO:0007135 - meiosis II		
81	DS4	ds4(t), ds4	DESYNAPSIS 4	desynapsis4, desynapsis 4, desynapsis-4					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060252			GO:0007135 - meiosis II		
82	DS5	ds5(t), ds5	DESYNAPSIS 5	desynapsis5, desynapsis 5, desynapsis-5					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060253			GO:0007135 - meiosis II		
83	DS6	ds6(t), ds6	DESYNAPSIS 6	desynapsis6, desynapsis 6, desynapsis-6					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060254			GO:0007135 - meiosis II		
84	DS7	ds7(t), ds7	DESYNAPSIS 7	desynapsis7, desynapsis 7, desynapsis-7					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060255			GO:0007135 - meiosis II		
85	DS8	ds8(t), ds8	DESYNAPSIS 8	desynapsis8, desynapsis 8, desynapsis-8					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060256			GO:0007135 - meiosis II		
86	DS9	ds9(t), ds9	DESYNAPSIS 9	desynapsis9, desynapsis 9, desynapsis-9					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060257			GO:0007135 - meiosis II		
87	DU2	du2	DULL ENDOSPERM 2	dull endosperm2, dull endosperm 2, dull endosperm-2		du2-2, du-2		low amylose content mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060262			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000105 - dull endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
88	DU3	du3, OsCBP20, OsCBP20/du3, CBP20	DULL ENDOSPERM 3	dull endosperm3, dull endosperm 3, dull endosperm-3, dull 3, cap-binding protein 20			2	low amylose content mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. Q84L14.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os02g0612300	LOC_Os02g39890.2, LOC_Os02g39890.1	GR:0060263			GO:0005846 - nuclear cap binding complex, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0031053 - primary microRNA processing, GO:0000166 - nucleotide binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009568 - amyloplast starch grain, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0006370 - mRNA capping, GO:0005976 - polysaccharide metabolic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0000339 - RNA cap binding	TO:0000615 - abscisic acid sensitivity, TO:0000432 - temperature response trait, TO:0000105 - dull endosperm, TO:0000429 - salt sensitivity, TO:0000196 - amylose content, TO:0000095 - osmotic response sensitivity	PO:0009089 - endosperm 
89	DU5	du5	DULL ENDOSPERM 5	dull endosperm5, dull endosperm 5, dull endosperm-5				dull endosperm, low amylose content. low amylose content mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060265			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
90	DW2	dw2(fh2), dw2, fh2, FH2, OsFH2	DEEP WATER TOLERANCE 2	deep water tolerance2, deep water tolerance-2, Formin-like protein 2, formin homology 2, forming family protein 2, FH2 protein 2, FH2 domain protein 2	FORMIN-LIKE PROTEIN 2		4	LOC_Os04g38810. A2XUA1(indica). Q7XUV2(japonica). PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os04g0461800	LOC_Os04g38810.1	GR:0060273			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016021 - integral to membrane, GO:0009413 - response to flooding, GO:0016020 - membrane, GO:0003779 - actin binding, GO:0030036 - actin cytoskeleton organization	TO:0000103 - deepwater stress, TO:0000170 - elongation ability	PO:0000003 - whole plant 
91	DW3	dw3	DEEP WATER TOLERANCE 3	deep water tolerance3, deep water tolerance 3, deep water tolerance-3				Elongation of internodes in responce to deepwater. PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance			GR:0060274			GO:0009413 - response to flooding	TO:0000103 - deepwater stress, TO:0000170 - elongation ability	PO:0000003 - whole plant 
92	E2		HEADING DATE 2	Heading date2, Heading date 2, Heading date-2				PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060276			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading	PO:0009049 - inflorescence 
93	EF2	ef2 (=lf-1), ef2(t) (lf1), lf1, ef2	EARLINESS 2	late heading2, late heading 2, late heading-2			9	14 days later in heading than the original strain, Taichung 65 (T65). [RGN12:22] PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060279			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading	PO:0009049 - inflorescence 
94	EF3	ef3(t), ef3	EARLINESS 3	late heading3, late heading 3, late heading-3				10 days later in heading than the original strain, Taichung 65 (T65). [RGN12:22] PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060280			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading	PO:0009049 - inflorescence 
95	EF4	ef4, ef4(t)	EARLINESS 4	late heading4, late heading 4, late heading-4			3	14 days later in heading than the original strain, Taichung 65 (T65). [RGN12:22] PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060281			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading	PO:0009049 - inflorescence 
96	EL	El*, El	FLOATING HABIT	Floating habit, Floating habit (elongation ability)				complementary with sd1 or d18-k. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060289			GO:0009685 - gibberellin metabolic process, GO:0009413 - response to flooding	TO:0000145 - internode length, TO:0000103 - deepwater stress, TO:0000170 - elongation ability	PO:0000003 - whole plant , PO:0005005 - shoot internode , PO:0009011 - plant structure 
97	EML1	eml1	EMBRYOLESS 1	embryoless1					 Seed - Morphological traits - Embryo						GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis, GO:0009266 - response to temperature stimulus		
98	EML1	eml1*, eml1	EMBRYOLESS 1	embryoless1, embryoless 1, embryoless-1				PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060292			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000432 - temperature response trait, TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
99	ENL1	enl1	ENDOSPERMLESS 1	endospermless1, endospermless 1, endospermless-1, SNF2 family helicase ENL1		enl1-1, enl1-2	4	PO:0009009; embryo ; PO:0009089; endosperm. orthologous to human Plk1-Interacting Checkpoint Helicase (PICH). LOC_Os04g59624. SNF2 family helicase.	 Seed - Morphological traits - Endosperm	Os04g0692750	LOC_Os04g59624.3, LOC_Os04g59624.2, LOC_Os04g59624.1	GR:0060295			GO:0005737 - cytoplasm, GO:0007059 - chromosome segregation, GO:0000280 - nuclear division, GO:0005634 - nucleus, GO:0009790 - embryonic development, GO:0009960 - endosperm development, GO:0009653 - anatomical structure morphogenesis, GO:0007067 - mitosis	TO:0000587 - endosperm quality, TO:0000064 - embryo related trait, TO:0000231 - endospermless, TO:0000113 - giant embryo	PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0007633 - endosperm development stage 
100	ENL1	enl1*	ENDOSPERMLESS 1	endospermless1					 Seed - Morphological traits - Endosperm						GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development		
101	ESBA	Esba*, Esb1, Esba	EXTRA SCHLENCHYMATOUS BAND IN STEM A	Extra schlenchymatous band in stem-a, Extra schlenchymatous band in stem-1				Complementary with Esb-b. An extra sclerencymatous band is found in the stem of this mutant.[454] Extra schlenchymatous band in stem. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060299			GO:0030154 - cell differentiation	TO:0000361 - stem anatomy and morphology trait	PO:0009047 - stem 
102	ESBB	Esbb*, Esb2, Esbb	EXTRA SCHLENCHYMATOUS BAND IN STEM B	Extra schlenchymatous band in stem-b, Extra schlenchymatous band in stem-2				Complementary with Esb-a. An extra sclerenchymatous band is found in the stem of this mutant. [454] Extra schlenchymatous band in stem. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060300			GO:0030154 - cell differentiation	TO:0000361 - stem anatomy and morphology trait	PO:0009047 - stem 
103	ESP4	Esp4, 10/16-H	ENDOSPERM STORAGE PROTEIN 4	Endosperm storage protein4, Endosperm storage protein 4, regulatory gene for PB-I., Endosperm storage protein-4	ENDOSPERM STORAGE PROTEIN 4			PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060304			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
104	EST11	Est11(t), Est11	ESTERASE 11	Esterase11, Esterase 11, Esterase-11	ESTERASE 11	Est11-0(t), Est11-1(t), Est11-2(t), Est11-3(t)		Dimers. The band migrates faster than that of Est2 and slower than that of Est12, expressed as a double band. No variant in Asian cultivars.	 Biochemical character			GR:0060315			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
105	EST4	Est4	ESTERASE 4	Esterase4, Esterase 4, Esterase-4	ESTERASE 4	Est4-1, Est4-2		L(AG).	 Biochemical character			GR:0060308			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
106	EST6	Est6	ESTERASE 6	Esterase6, Esterase 6, Esterase-6	ESTERASE 6	Est6-0, Est6-1.		P(ST). Differential allel frequencies between Indica and Japonica types.	 Biochemical character			GR:0060310			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
107	EST8	Est8	ESTERASE 8	Esterase8, Esterase 8, Esterase-8	ESTERASE 8	Est8-0, Est8-1.		P(ST).	 Biochemical character			GR:0060312			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
108	FES1	fes1	FEMALE STERILE 1	female sterile1, female sterile 1, female sterile-1				Its pollen function is normal, but due to a low rate of embryosac formation fes1/fes1 results in a semi-sterility. In the double recessive homozyote with fes2/fes2 the seed setting becomes as low as 2 to 5%. This sterility is transmitted to the next generation. PO:0009062; gynoecium. 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060325			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility	PO:0009062 - gynoecium 
109	FES2	fes2	FEMALE STERILE 2	female sterile2, female sterile 2, female sterile-2				Its pollen function is normal, but due to a low rate of embryosac formation fes2/fes2 results in a semi-sterility. In the double recessive homozyote with fes1/fes1 the seed setting becomes as low as 2 to 5%. This sterility is transmitted to the next generation. PO:0009062; gynoecium.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060326			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility	PO:0009062 - gynoecium 
110	FES3	Fes3(Fes2), Fs, Fes3	FEMALE STERILE 3	Female sterile3, Female sterile 3, Female sterile-3				PO:0009062; gynoecium.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060327			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility	PO:0009062 - gynoecium 
111	FON1	OsFON1, fon1, OsRLCK219, RLCK219	FLORAL ORGAN NUMBER 1	floral organ number1, floral organ number 1, floral organ number-1, CLV1 orthologue, Receptor-like Cytoplasmic Kinase 219	RECEPTOR-LIKE CYTOPLASMIC KINASE 219	fon1-1, fon1-2, fon1-3, fon1-5	6	AB182388. CLV1-like LRR receptor kinase. PO:0009036; lodicule ; PO:0006455; carpel (sensu Poaceae) ; PO:0000230; inflorescence meristem ; PO:0000229; floral meristem ; PO:0006441; stamen (sensu Poaceae) ; PO:0009046; flower. GRO:0007139; A-vegetative stage ; GRO:0007157; panicle development. LOC_Os06g50340. a rice ortholog of Arabidopsis CLV1/HAR1/NARK. KC609110-KC609119 (O. sativa and wild rice species, partial cds).	 Reproductive organ - panicle,  Seed,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0717200	LOC_Os06g50340.1	GR:0060333			GO:0005886 - plasma membrane, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0009887 - organ morphogenesis, GO:0010080 - regulation of floral meristem growth, GO:0004674 - protein serine/threonine kinase activity, GO:0004672 - protein kinase activity, GO:0004713 - protein tyrosine kinase activity, GO:0030154 - cell differentiation, GO:0010229 - inflorescence development, GO:0048833 - specification of floral organ number, GO:0006468 - protein amino acid phosphorylation, GO:0004702 - receptor signaling protein serine/threonine kinase activity, GO:0009888 - tissue development, GO:0016021 - integral to membrane, GO:0032940 - secretion by cell, GO:0016020 - membrane, GO:0009934 - regulation of meristem structural organization	TO:0000052 - primary branching of inflorescence, TO:0000249 - leaf senescence, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000499 - flower anatomy and morphology trait, TO:0000346 - tiller number, TO:0000225 - stamen number, TO:0000223 - pistil anatomy and morphology trait, TO:0000145 - internode length, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000184 - seed anatomy and morphology trait	PO:0001083 - inflorescence development stage , PO:0009030 - carpel , PO:0009036 - lodicule , PO:0009046 - flower , PO:0009029 - stamen , PO:0000230 - inflorescence meristem , PO:0000229 - flower meristem , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009049 - inflorescence 
113	FON2	fon2, FON4, OsFON4, FON2/FON4, TG1	FLORAL ORGAN NUMBER 2	floral organ number2, floral organ number 2, floral organ number-2, floral organ number4, floral organ number 4, twin-grain1, twin-grain 1		fon2-1, fon2-2, fon2-3, fon4, fon4-1, fon4-2, fon4-3, tg1	11	PO:0009046; flower. AB245090. A0MH06. DQ836359. a Putative Ortholog of Arabidopsis CLAVATA3. OsFON4 in Bakshi et al. 2017.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0595400	LOC_Os11g38270.1	GR:0060334			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development, GO:0005576 - extracellular region, GO:0030154 - cell differentiation, GO:0007275 - multicellular organismal development	TO:0000499 - flower anatomy and morphology trait, TO:0006038 - floral organ number, TO:0002759 - grain number, TO:0000445 - seed number	PO:0009046 - flower 
115	FOR1	for1*, for1	FLOWER ORGANIZATION 1	flower organization1, flower organization 1, flower organization-1		for1-1, for1-2		PO:0009046; flower.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060335			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower 
116	FSC	Fsc*(Fc), Fc, Fsc	FUSCOID CELLS ATTACHED TO VASCULAR BUNDLES	Fuscoid cells attached to vascular bundles				Fuscoid cells are those with big vacuoles occurring on either side of the vascular bandle in the leaf balde. They are commonly found in bamboo but are rare in rice. [454] PO:0009047; stem.	 Vegetative organ - Culm			GR:0060338			GO:0007275 - multicellular organismal development	TO:0000361 - stem anatomy and morphology trait	PO:0009047 - stem 
117	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1	FRIZZY PANICLE	frizzy panicle, BRANCHED SILKLESS 1 homolog, ethylene response factor 78, APETALA2/ethylene-responsive element binding protein 133, BRANCHED FLORETLESS 1, FRIZZLE PANICLE		fzp-1, fzp-2, fzp-3, fzp-4, fzp-5, fzp-6, fzp-7, fzp-FM44, fzp-KH1, fzp-KH56, fzp-8, fzp-9, fzp-10, fzp-g, bfl1, fzp-11	7	Frizzy plants produce no seed, being propagated as heterozygotes.  Development of the rachis branches appears to be normal, but small branches continue to be formed instead of spikelets.  These branches appear to produce multiple rachillas. [238] fzp is located on chromosome 7 flanked by markers R1789 bs 3817R. ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR. PO:0009049; inflorescence ; PO:0009046; flower. AB103120. AB568302.	 Reproductive organ - Inflorescence,  Character as QTL - Yield and productivity	Os07g0669500	LOC_Os07g47330.1	GR:0060339			GO:0003677 - DNA binding, GO:0010074 - maintenance of meristem identity, GO:0010582 - floral meristem determinacy, GO:0045449 - regulation of transcription, GO:0003700 - transcription factor activity, GO:0048497 - maintenance of floral organ identity, GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent, GO:0010093 - specification of floral organ identity, GO:0010229 - inflorescence development	TO:0000152 - panicle number, TO:0000050 - inflorescence branching, TO:0002759 - grain number, TO:0000499 - flower anatomy and morphology trait, TO:0000089 - panicle type, TO:0000621 - inflorescence development trait	PO:0009046 - flower , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
118	G2	G2(Gm, Gl), Gl, Gm	LONG STERILE LEMMAS 2	Long sterile lemmas2, Long sterile lemmas 2, Long sterile lemmas-2				Steril lemmas grow long as same as lemma. Incomplete dominance. PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060341			GO:0007275 - multicellular organismal development	TO:0000240 - sterile lemma length	PO:0009037 - lemma 
119	G6PD1	G6pd1(t)*, G6pd1	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 1	Glucose-6-phosphate dehydrogenase1, Glucose-6-phosphate dehydrogenase 1, Glucose-6-phosphate dehydrogenase-1	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 1				 Biochemical character			GR:0060342			GO:0004345 - glucose-6-phosphate dehydrogenase activity		
121	GL2	gl2	GLABROUS LEAF AND HULL 2	glabrous leaf and hull2, glabrous leaf and hull 2, glabrous leaf and hull-2				PO:0009038; palea ; PO:0020039; leaf lamina ; PO:0009037; lemma.	 Vegetative organ - Leaf			GR:0060369			GO:0030154 - cell differentiation	TO:0000417 - lemma and palea pubescence, TO:0000055 - leaf lamina pubescence,  - palea pubescence	PO:0009037 - lemma , PO:0009038 - palea , PO:0020039 - leaf lamina 
122	GLC	glc	GEL CONSISTENCY	gel consistency(hard), gel consistency		glc-a(medium), glc-b(soft)		The differences between hard and soft, hard and medium and soft gel consistency are under monogenic control. Multiple allels at glc locus: glc+ (hard), glc-a (medium) and glc-b (soft). PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060371			GO:0045735 - nutrient reservoir activity	TO:0000211 - gel consistency	PO:0009010 - seed 
123	GLE1	gle1*. gle1	GLOBULAR EMBRYO 1	globular embryo1, globular embryo 1, globular embryo-1				This mutant does not differentiate any embryonic organs but stays in a globular morphology even fully matured. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060372			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
124	GLE2	gle2*, gle2	GLOBULAR EMBRYO 2	globular embryo2, globular embryo 2, globular embryo-2		gle2-1, gle2-2		This mutant does not differentiate any embryonic organs, but stays in globular morphology even fully matured. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060373			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
125	GLE3	gle3*, gle3	GLOBULAR EMBRYO 3	globular embryo3, globular embryo 3, globular embryo-3				This mutant does not differentiate any embryonic organs, but stays in a globular morphology even fully matured. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060374			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
126	GLH1	Glh1	GREEN LEAFHOPPER RESISTANCE 1	Green leafhopper resistance1, Green leafhopper resistance 1, Green leafhopper resistance-1				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060376			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
127	GLH2	Glh2	GREEN LEAFHOPPER RESISTANCE 2	Green leafhopper resistance2, Green leafhopper resistance 2, Green leafhopper resistance-2				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060377			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
128	GLH4	glh4	GREEN LEAFHOPPER RESISTANCE 4	green leafhopper resistance4, green leafhopper resistance 4, green leafhopper resistance-4				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060379			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
129	GLH5	Glh5	GREEN LEAFHOPPER RESISTANCE 5	Green leafhopper resistance5, Green leafhopper resistance 5, Green leafhopper resistance-5				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060380			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
130	GLH7	Glh7	GREEN LEAFHOPPER RESISTANCE 7	Green leafhopper resistance7, Green leafhopper resistance 7, Green leafhopper resistance-7				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060382			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
131	GLU2	Glu2*(Gt1), Gt1, Glu2	GLUTELIN 2	Rice glutelin2, Rice glutelin 2, Rice glutelin-2	GLUTELIN 2			PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060395			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
132	GLU3	Glu3*(Gt3), Gt3, Glu3	GLUTELIN 3	Rice glutelin3, Rice glutelin 3, Rice glutelin-3	GLUTELIN 3			PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060396			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
133	GLU4	Glu4*, Glu4, OsGLU4	GLUTELIN 4	Rice glutelin4, Rice glutelin-4, glutelin-4	GLUTELIN 4			PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060397			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
134	GLU5	Glu5*, Glu5, OsGLU5	GLUTELIN 5	Rice glutelin5, Rice glutelin 5, Rice glutelin-5, glutelin-5	GLUTELIN 5			PO:0009010; seed. GRO:0007047; 02-seedling ; GRO:0007235; 1.3-coleoptile emergence stage.	 Seed - Physiological traits - Storage substances			GR:0060398			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
135	GLU6	Glu6*(GluA4), Glu6, GluA4, GluA-4	GLUTELIN 6	Rice glutelin6, Rice glutelin 6, Rice glutelin-6	GLUTELIN 6			pseudogene. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060399			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
136	GLU7	Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7	GLUTELIN 7	Rice glutelin7, Rice glutelin-7, Glutelin type-B 2 precursor, Glutelin type-B 2, Glutelin type-B 7, Glutelin type-B 2 acidic chain, Glutelin type-B 2 basic chain	GLUTELIN 7		2	LOC_Os02g15150. Q02897. AY427570 (promoter). PO:0009010; seed. GluB-2 in Mitsukawa et al. 1998. X54192.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os02g0249600	LOC_Os02g15150.2, LOC_Os02g15150.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
137	GLUA1	Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16	GLUTELIN SUBFAMILY A1 FROM WILD RICE SPECIES	Glutelin subfamily A1 from wild rice species, Glutelin subfamily A-1 from wild rice species, Glutelin type-A 1 precursor, Glutelin type-A 1, Glutelin type I, Glutelin type-A 1 acidic chain, Glutelin type-A 1 basic chain, Rice glutelin-19, glutelin-19, endosperm-specific gene 16	GLUTELIN SUBFAMILY A1 FROM WILD RICE SPECIES		1	M17513. X52153 (promoter sequence). EU264102 (promoter sequence). P07728. PO:0009010; seed. LOC_Os01g55690. EF122458.	 Seed - Physiological traits - Storage substances	Os01g0762500	LOC_Os01g55690.1	GR:0060408			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
138	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137	GLUTELIN SUBFAMILY A2 FROM WILD RICE SPECIES	Glutelin subfamily A2 from wild rice species, Glutelin type-A 2 precursor, Glutelin type-A 2, Glutelin type II, Glutelin type-A 2 acidic chain, Glutelin type-A 2 basic chain, Glutelin subfamily A-2 from wild rice species, Rice glutelin-20, glutelin-20, endosperm-specific gene 137	GLUTELIN SUBFAMILY A2 FROM WILD RICE SPECIES		10	Y00687, D00584. X06149. EU264103 (promoter sequence). P07730. PO:0009010; seed. LOC_Os10g26060.	 Seed - Physiological traits - Storage substances	Os10g0400200	LOC_Os10g26060.1	GR:0060409			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
139	GLUA3	Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3	GLUTELIN SUBFAMILY A3 FROM WILD RICE SPECIES	Glutelin subfamily A3 from wild rice species, Glutelin type-A 3 precursor, Glutelin type-A 3, Glutelin type-A 3 acidic chain, Glutelin type-A 3 basic chain, Rice glutelin-21, glutelin-21, endosperm-specific gene 47, glutelin 3	GLUTELIN SUBFAMILY A3 FROM WILD RICE SPECIES		3	X54313. Q09151. EU264104 (promoter sequence). PO:0009010; seed. LOC_Os03g31360. GLU3 in Xu et al. 2016.	 Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os03g0427300	LOC_Os03g31360.1	GR:0060410			GO:0009791 - post-embryonic development, GO:0009845 - seed germination, GO:0048316 - seed development, GO:0000003 - reproduction, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009415 - response to water, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0045735 - nutrient reservoir activity	TO:0000615 - abscisic acid sensitivity, TO:0000237 - water stress trait, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000490 - protein composition related trait	PO:0009010 - seed , PO:0007057 - 0 seed germination stage , PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
140	GM1	Gm1, Gm-1, GM-1	GALL MIDGE RESISTANCE 1	Gall midge resistance1, Gall midge resistance 1, Gall midge resistance-1			9	Gall midge resistance gene, located on chromosome 9 between markers RM444 and RM219. PO:0009011; plant structure ; PO:0000003; whole plant. Gm1 is mapped within 0.18 Mb region on chromosome 9 between the SSR markers RM23941 and RM23956 (Yasala et al. 2012).	 Tolerance and resistance - Insect resistance			GR:0060417			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
141	GM3	gm3*, gm3	GALL MIDGE RESISTANCE 3	gall midge resistance3, gall midge resistance 3, gall midge resistance-3			4	PO:0009011; plant structure ; PO:0000003; whole plant. Two SSR markers RM17473 and RM17480 located on chromosome 4L are linked to gm3 at a genetic distance of ~ 3.2 cM and ~ 2.0 cM, respectively (Sama et al. 2010).	 Tolerance and resistance - Insect resistance			GR:0060419			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
142	GM4	Gm4(t)*, Gm4(t), Gm4, Gm4t	GALL MIDGE RESISTANCE 4	Gall midge resistance4(t), Gall midge resistance4, Gall midge resistance 4, Gall midge resistance-4			8	Gall midge resistance gene located on the short arm of chromosome 8. PO:0009011; plant structure ; PO:0000003; whole plant. Gm4t mapped onto chromosome 8 between markers R1813 and S1633B (Mohan et al. 1997). Gm4 is mapped within 0.33 Mb region on chromosome 8 between the SSR markers RM22551 and RM22562 (Yasala et al. 2012).	 Tolerance and resistance - Insect resistance			GR:0060420			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
143	GRH2	Grh2	GREEN RICE LEAFHOPPER RESISTANCE 2	Green rice leafhopper resistance2			11		 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	
144	GRH3	Grh3*, Grh3, Grh3(t)	GREEN RICE LEAFHOPPER RESISTANCE 3	Green rice leafhopper resistance3, Green rice leafhopper resistance 3, Green rice leafhopper resistance-3			6	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060434			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
145	GSV	Gsv(Gs), Gs, Gsv	GRASSY STUNT RESISTANCE	Grassy stunt resistance				Resistant to the grassy stunt, a viral disease transmitted by brown planthopper. Infested plants become sterile. One of the most serious viral disease in the tropical Asia. PO:0009006; shoot.	 Tolerance and resistance - Disease resistance			GR:0060436			GO:0009615 - response to virus	TO:0000127 - rice grassy stunt virus-1 resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	PO:0009006 - shoot system 
146	GT	Gt(t)*, Gt	HIGH GELATINIZATION TEMPERATURE	High gelatinization temperature				PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Taste			GR:0060437			GO:0016051 - carbohydrate biosynthetic process	TO:0000462 - gelatinization temperature	PO:0009089 - endosperm 
147	H(T)*	H(t)*, Hcr	HARDNESS OF COOKED RICE	Hardness of cooked rice				PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Taste			GR:0060438			GO:0016051 - carbohydrate biosynthetic process	TO:0000587 - endosperm quality, TO:0000489 - carbohydrate composition related trait	PO:0009089 - endosperm 
148	HCA1	hca1	HYBRID CHLOROSIS-A	hybrid chlorosis-a		hca1-1, Hca1-2	12	complementary. hybrid chlorosis. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060440			GO:0048544 - recognition of pollen, GO:0015995 - chlorophyll biosynthetic process	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
149	HCA2	hca2	HYBRID CHLOROSIS-A	hybrid chlorosis-a		hca2-1, Hca2-2	11	hybrid chlorosis. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060441			GO:0009873 - ethylene mediated signaling pathway, GO:0015995 - chlorophyll biosynthetic process	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
150	HE	He	HELMINTHOSPORIUM ORYZAE RESISTANCE	Helminthosporium oryzae resistance				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Disease resistance			GR:0060445			GO:0009620 - response to fungus	TO:0000356 - brown spot disease resistance, TO:0000323 - stem rot disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
151	HLB	Hlb, Hl2	HAIRY LEAF-B	Hairy leaf-b, Hairy leaf-2				Complementary with Hla. Thick and long hairs on leaves. Pleiotropic effects on hair length of panicle branches but no remarkable effect in pubescence of floral glumes. [299] PO:0020039; leaf lamina.	 Vegetative organ - Leaf			GR:0060448			GO:0030154 - cell differentiation	TO:0000055 - leaf lamina pubescence	PO:0020039 - leaf lamina 
152	HPR1	hpr1	HYDROXYPROLINE RESISTANCE1	hydroxyproline resistance1, hydroxyproline resistance 1, hydroxyproline resistance-1				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060450			GO:0009628 - response to abiotic stimulus	TO:0000482 - chemical stress sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
153	HPR2(T)	hpr2(t), hpr2	HYDROXYPROLINE RESISTANCE2	hydroxyproline resistance2, hydroxyproline resistance 2, hydroxyproline resistance-2				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060451			GO:0009628 - response to abiotic stimulus	TO:0000482 - chemical stress sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
154	HPR3(T)	hpr3(t), hpr3	HYDROXYPROLINE RESISTANCE3	hydroxyproline resistance3, hydroxyproline resistance 3, hydroxyproline resistance-3				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060452			GO:0009628 - response to abiotic stimulus	TO:0000482 - chemical stress sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
155	HWA1	Hwa1(L1a), L-1-a(La), L1a, Hwa1	HYBRID WEAKNESS A1	Hybrid weakness a1, Hybrid weakness (lethal)-a1		HWA1-1, hwa1-2	11	This gene causes hybrid lethal complementarily with Hwa2. PO:0009046; flower. Germplasm:P.T.B.10, HWA1 gene is mapped between RM27051 and RM27068.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060455		90.0	GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
156	HWA2	Hwa2(L1b), L-1-b(Lb), L1b, Hwa2	HYBRID WEAKNESS A2	Hybrid weakness a2, Hybrid weakness (lethal)-a2		HWA2-1, hwa2-2	11	This gene causes hybrid lethal complementarily with Hwa1. PO:0009046; flower. Germplasm:P.T.B.7, HWA2 gene is mapped between RM27051 and RM27068.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060456		90.0	GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
157	HWB1	hwb1(w'a), w'a, hwb1	HYBRID WEAKNESS B1	hybrid weakness b1, f2 weakness-b1				This gene causes F1 weakness complementarily with hwb2. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060457			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000355 - heterosis, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
158	HWB2	hwb2(w'b), w'b, hwb2	HYBRID WEAKNESS B2	hybrid weakness b2, f2 weakness-b2				This gene causes F1 weakness complementarily with hwb1. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060458			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000355 - heterosis, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
159	HWC1	Hwc1(L2a), L-2-a, Lr1, Hwc-1, L2a	HYBRID WEAKNESS C1	Hybrid weakness c1, Hybrid weakness (lethal)-c1		Hwc1-1, hwc1-2	1	This gene causes hybrid lethal complementarily with Hwc2. PO:0009046; flower.So far, Jamaica has been the only cultivar carrying the Hwc1-1 allele. 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060459			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
160	HWC2	Hwc2(L2b), L-2-b, Lr2, Hwc-2, L2b, Hwc2	HYBRID WEAKNESS C2	Hybrid weakness c2, Hybrid weakness (lethal)-c2		Hwc2-1, hwc2-2	4	This gene causes hybrid lethal complementarily with Hwc1. PO:0009046; flower.Many Japanese cultivars carry Hwc2-1 allele. 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060460			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
161	IANA	IAna*	SUPPRESSOR FOR AWN A	Suppressor for awn, Suppressor for awn-a				PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060464			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
162	IANB	IAnb*	SUPPRESSOR FOR AWN B	Suppressor for awn, Suppressor for awn-b				PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060465			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
163	IBPH1	IBph1	INHIBITOR FOR BPH 1	Inhibitor for Bph1				PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060467			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
164	IC	ic*, Ic	IRON DEFICIENCY CHLOROSIS	iron deficiency chlorosis, Iron deficiency chlorosis tolerance				Susceptible to iron deficiency, showing chlorosis. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060468			GO:0009628 - response to abiotic stimulus	TO:0000224 - iron sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
165	IFR	Ifr, Rf16, Ifr1	INDUCTION OF FERTILITY	Induction of fertility restoration, Pollen fertility restore-16, instability of fertility restoration 1				Fertile revertant for [cms-bo] cytoplasm. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060470			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait, TO:0000498 - female fertility restoration trait	PO:0009066 - anther 
166	IPL3	IPl3	INHIBITOR FOR PURPLE LEAF 3	Inhibitor for purple leaf3, Inhibitor for purple leaf 3, Inhibitor for purple leaf-3				Anthocyanin pigmentation on leaf blade and sheath by Plw is inhibited by IPl3 in a duplicate or triplicate action with IPl1 or IPl2. PO:0020104; leaf sheath ; PO:0006012; leaf collar ; PO:0005005; shoot internode.	 Coloration - Anthocyanin			GR:0060476			GO:0009812 - flavonoid metabolic process	TO:0000364 - leaf collar color, TO:0000299 - leaf lamina color, TO:0000426 - internode color, TO:0000367 - basal leaf sheath color	PO:0005005 - shoot internode , PO:0006012 - leaf collar , PO:0020104 - leaf sheath 
167	IPL5	IPl5	INHIBITOR FOR PURPLE PERICARP 5	Inhibitor for purple pericarp-5				Anthocyanin pigmentation on caryopsis by Plw is inhibited by IPl5 in duplicate action with IPl4. Inhibitor for purple pericarp. PO:0009010; seed.	 Coloration - Anthocyanin			GR:0060478			GO:0009812 - flavonoid metabolic process	TO:0000487 - endosperm color, TO:0000190 - seed coat color	PO:0009010 - seed 
168	IPL6	IPl6	INHIBITOR FOR PURPLE LEAF 6	Inhibitor for purple leaf (Pl-i), Inhibitor for purple leaf (Pl.2(Pl-i)), Inhibitor for purple leaf-6				Anthocyanin pigmentation on leaf blade and sheath by Pli is inhibited strongly by IPl6. PO:0009025; leaf.	 Coloration - Anthocyanin			GR:0060479			GO:0009812 - flavonoid metabolic process	TO:0000326 - leaf color, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
169	IPS1	IPs1*, IPs1	INHIBITOR FOR PURPLE STIGMA 1	Inhibitor for purple stigma (Ps1), Inhibitor for purple stigma-1				Inhibitor for purple stigma (Ps1). PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060480			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
170	IPS3	IPs3*, IPs2	INHIBITOR FOR PURPLE STIGMA 3	Inhibitor for purple stigma (Ps3), Inhibitor for purple stigma-2				Inhibitor for purple stigma (Ps3). PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060481			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
171	IPSA	IPsa(IPs1), IPsa, IPs1, Ips3	INHIBITOR FOR PURPLE STIGMA A	Inhibitor for purple stigma-a (Psa), Inhibitor for purple stigma-a, Inhibitor for purple stigma-3				Inhibitor for purple stigma. complementary with IPsb. PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060482			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
172	ISE1	iSe1, i-Se-1	RECESSIVE INHIBITOR FOR PHOTOSENSITIVITY (SE1)	recessive inhibitor for photosensitivity (Se1)				PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060484			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000469 - days to maturity, TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
173	ISPR1	ISpr1*, ISpr1	INHIBITOR FOR SPREADING PANICLE 1	Inhibitor for spreading panicle1, Inhibitor for spreading panicle 1, Inhibitor for spreading panicle-1				duplicate gene with ISpr2. Inhibitor for spreading panicle gene Spr-a or Spr-b. [292] PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060485			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
174	ISPR2	ISpr2*, ISpr2	INHIBITOR FOR SPREADING PANICLE 2	Inhibitor for spreading panicle2, Inhibitor for spreading panicle 2, Inhibitor for spreading panicle-2				Duplicate gene with ISpr1. Inhibitor for spreading panicle gene Spr-a or Spr-b. [292] PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060486			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
175	KR1	Kr1*, Kr1	SHORT GRAIN	Short grain				PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060488			GO:0007275 - multicellular organismal development	TO:0000391 - seed size, TO:0000146 - seed length	PO:0009010 - seed 
176	KR2	Kr2*, Kr2	LONG GRAIN	Long grain				PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060489			GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000391 - seed size	PO:0009010 - seed 
177	LGP	lgp*, lgp	LIGHT GREEN PANICLE AND LEAF	light green panicle and leaf				Light green panicles and leaves. PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060498			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000264 - lemma and palea color	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
178	LHD	lhd	LEAFY HEAD	leafy head				Seed stock and clone has been lost. PO:0020122; inflorescence axis. GRO:0007140; B-reproductive stage ; GRO:0007189; panicle stage PA1.	 Reproductive organ - Inflorescence			GR:0060501			GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0010229 - inflorescence development, GO:0010228 - vegetative to reproductive phase transition	TO:0000207 - plant height, TO:0000089 - panicle type, TO:0000621 - inflorescence development trait, TO:0000735 - plastochron	PO:0020122 - inflorescence axis 
179	LKG	Lk g	LONG KERNEL GIMBOUZU	'Gimbozu mutant' long grain				20% longer in grain length compared with the normal type. [163]	 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development	TO:0000146 - seed length	
180	LKI2	lki2	 LONG KERNEL IRAT13 2	IRAT 13' long grain2, IRAT 13' long grain 2, 'IRAT 13' long grain-2				One of the duplicate genes interacting with lki1. [RGN9:3] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060507			GO:0007275 - multicellular organismal development	TO:0000146 - seed length	PO:0009010 - seed 
181	LK1	lk1(t), lkna, lk1	NAGAYAMA 77402A LONG GRAIN 1	Nagayama 77402a long grain1, 'Nagayama 77402a (N179)' long grain, long kernel-1				Long grain with low seed setting and reduced spikelet number. [781] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060503			GO:0007275 - multicellular organismal development	TO:0000146 - seed length	PO:0009010 - seed 
182	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4	LIPOXYGENASE 3	Lipoxygenase3, Lipoxygenase 3, Lipoxygenase-3, Putative lipoxygenase 3, Lipoxygenase 4	LIPOXYGENASE 3		3	recessive gene lox3 causes deficiency of enzyme lipoxygenase-3. Lipoxygenase produces stale flavor during the storage of grain making reduce grain quality seriously. Thai rice cultivar Daw Dam lacks LOX-3 in its seeds. PO:0009010; seed. Q7G794. OsLOX4 in Marla and Singh 2012. FJ660623, FJ660624. AB571658 (LOX3 pseudogene of cultivar Daw Dam).	 Seed - Physiological traits - Taste	Os03g0700400	LOC_Os03g49350.1	GR:0060509			GO:0005506 - iron ion binding, GO:0016165 - lipoxygenase activity, GO:0055114 - oxidation reduction, GO:0031408 - oxylipin biosynthetic process	TO:0000488 - seed composition based quality trait	PO:0009010 - seed 
183	LP2	lp2	LONG PALEA 2	long palea2, long palea 2, long palea-2				duplicate gene with lp1. The palea outgrows the lemma. [543] PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060511			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea 
184	LR	lr(t)*, lr	LEAF ROLLING UNDER DROUGHT STRESS	leaf rolling under drought stress				Leaf rolling occurs under drought condition. PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060512			GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0000003 - whole plant 
185	MAL3	Mal3(t)), Mal3	MALATE DEHYDROGENASE(NADP) 3	Malate dehydrogenase(NADP)3	MALATE DEHYDROGENASE(NADP) 3	Mal3-1(t), Mal3-2(t)		Monomers. The band migrates slower than that of Mal1. Active in germinating seed. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060517			GO:0016615 - malate dehydrogenase activity		
186	MAL4	Mal4(t)*, Mal4	MALATE DEHYDROGENASE(NADP) 4	Malate dehydrogenase(NADP)4	MALATE DEHYDROGENASE(NADP) 4	Mal4-0(t), Mal4-1(t), Mal4-2(t), Mal4-3(t)		Monomers. Found in sprouting see. S(PAGE-TC).	 Biochemical character			GR:0060518			GO:0016615 - malate dehydrogenase activity		
187	MDH1	Mdh1	MALATE DEHYDROGENASE(NAD) 1	Malate dehydrogenase(NAD)1, Malate dehydrogenase (NAD) 1, Malate dehydrogenase (NAD)-1	MALATE DEHYDROGENASE(NAD) 1			Dimer. P(ST-H). Interlocus hybrid bands occur. Variant is known lnly in wild taxa. Thermomorphs are known.	 Biochemical character			GR:0060520			GO:0016615 - malate dehydrogenase activity, GO:0030060 - L-malate dehydrogenase activity		
188	MDH2	Mdh2(t)*, Mdh2(t), Mdh2	MALATE DEHYDROGENASE(NAD) 2	Malate dehydrogenase(NAD)2, Malate dehydrogenase (NAD) 2, Malate dehydrogenase (NAD)-2	MALATE DEHYDROGENASE(NAD) 2			P(ST-H). Interlocus hybrid bands occur. Variant is known only in wild taxa.	 Biochemical character			GR:0060521			GO:0016615 - malate dehydrogenase activity		
189	MLS1	mls1	MALFORMED LEMMA 1	malformed lemma1, malformed lemma 1, malformed lemma-1				This gene causes morphological abnormality in lemma, accompanied by low pollen fertility and seed setting. Duplicate gene with mls2. [499] PO:0009051; spikelet ; PO:0009038; palea ; PO:0020091; male gametophyte ; PO:0009037; lemma.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn			GR:0060527			GO:0007275 - multicellular organismal development	TO:0000436 - spikelet sterility, TO:0000053 - pollen sterility, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea , PO:0009051 - spikelet , PO:0020091 - obsolete microgametophyte 
190	MLS2	mls2	MALFORMED LEMMA 2	malformed lemma2, malformed lemma 2, malformed lemma-2				This gene causes morphological abnormality in lemma, accompanied by low pollen fertility and seed setting. Duplicate gene with mls1. [499] PO:0009051; spikelet ; PO:0009038; palea ; PO:0020091; male gametophyte ; PO:0009037; lemma.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn			GR:0060528			GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000436 - spikelet sterility, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea , PO:0009051 - spikelet , PO:0020091 - obsolete microgametophyte 
191	MS IR36(T)*	ms IR36(t)*), msIR36, ms66, MS IR36	MALE STERILE(IR36MS)	male sterile(IR36ms), male sterile (IR36ms or Milyang 54ms), male sterile-66, MALE STERILE (IR36MS)				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060557			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
192	MS M54(T)*	ms m54(t)*	MALE STERILE(MILYANG 54MS)	male sterile(Milyang 54ms)					 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development	TO:0000437 - male sterility	
193	MS M55(T)*	ms m55(t)*, MS M55, msm55(t)*, ms67, ms55	MALE STERILE(MILYANG 55MS)	male sterile(Milyang 55ms), male sterile (Milyang 55ms), MALE STERILE (MILYANG 55MS), male sterile-67				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060558			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
195	MS11	ms11	MALE STERILE 11	male sterile11, male sterile 11, male sterile-11				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060548			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
196	MS12	ms12	MALE STERILE 12	male sterile12, male sterile 12, male sterile-12				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060549			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
197	MS13	ms13	MALE STERILE 13	male sterile13, male sterile 13, male sterile-13				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060550			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
198	MS15	ms15	MALE STERILE 15	male sterile15, male sterile 15, male sterile-15				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060552			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
199	MS16	ms16	MALE STERILE 16	male sterile16, male sterile 16, male sterile-16				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060553			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
200	MS17	ms17	MALE STERILE 17	male sterile17, male sterile 17, male sterile-17				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060554			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
201	MS18	ms18(t)*, ms18(t), ms18	MALE STERILE 18	male sterile18, male sterile 18, male sterile-18				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060555			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
202	MS19	ms19(t)*, ms19(t), ms19	MALE STERILE 19	male sterile19, male sterile 19, male sterile-19				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061193			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
203	MS2	ms2 (msd), ms2(t)*, ms65, ms2, msd	MALE STERILE 2	male sterile2, male sterile 2, male sterile-65, male sterile-2				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060539			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
205	MS20	ms20(t)*, ms20(t), ms20	MALE STERILE 20	male sterile20, male sterile 20, male sterile-20				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061194			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
206	MS21	ms21(t)*, ms21(t), ms21	MALE STERILE 21	male sterile21, male sterile 21, male sterile-21				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061195			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
207	MS22	ms22(t)*, ms22(t), ms22	MALE STERILE 22	male sterile22, male sterile 22, male sterile-22				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061196			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
208	MS23	ms23(t)*, ms23(t), ms23	MALE STERILE 23	male sterile23, male sterile 23, male sterile-23				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061197			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
209	MS24	ms24(t)* (=ms29), ms24(t), ms24	MALE STERILE 24	male sterile24, male sterile 24, male sterile-24				identical to ms29. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061203			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
210	MS25	ms25(t)*, ms25(t), ms25	MALE STERILE 25	male sterile25, male sterile 25, male sterile-25				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061199			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
211	MS26	ms26(t)*, ms26(t), ms26	MALE STERILE 26	male sterile26, male sterile 26, male sterile-26				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061200			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
212	MS27	ms27(t)*, ms27(t), ms27	MALE STERILE 27	male sterile27, male sterile 27, male sterile-27				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061201			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
213	MS28	ms28(t)*, ms28(t), ms28	MALE STERILE 28	male sterile28, male sterile 28, male sterile-28				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061202			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
214	MS3	ms3(ms1), ms1, ms3	MALE STERILE 3	male sterile3, male sterile 3, male sterile-3				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060540			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
215	MS30	ms30(t)*, ms30	MALE STERILE 30	male sterile30, male sterile 30, male sterile-30				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061204			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
216	MS31	ms31(t)*, ms31	MALE STERILE 31	male sterile31, male sterile 31, male sterile-31				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061205			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
217	MS32	ms32(t)*, ms32	MALE STERILE 32	male sterile32, male sterile 32, male sterile-32				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061206			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
218	MS33	ms33(t)*, ms33	MALE STERILE 33	male sterile33, male sterile 33, male sterile-33				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061207			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
219	MS34	ms34(t)*, ms34	MALE STERILE 34	male sterile34, male sterile 34, male sterile-34				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061208			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
220	MS35	ms35(t)*, ms35	MALE STERILE 35	male sterile35, male sterile 35, male sterile-35				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061209			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
221	MS36	ms36(t)*, ms36	MALE STERILE 36	male sterile36, male sterile 36, male sterile-36				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061210			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
222	MS37	ms37(t)*, ms37	MALE STERILE 37	male sterile37, male sterile 37, male sterile-37				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061211			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
223	MS38	ms38(t)*, ms38	MALE STERILE 38	male sterile38, male sterile 38, male sterile-38				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061212			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
224	MS39	ms39(t)*, ms39	MALE STERILE 39	male sterile39, male sterile 39, male sterile-39				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061213			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
225	MS4	ms4(ms2), ms2, ms4	MALE STERILE 4	male sterile4, male sterile 4, male sterile-4				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060541			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
226	MS40	ms40(t)*, ms40	MALE STERILE 40	male sterile40, male sterile 40, male sterile-40				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061214			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
227	MS41	ms41(t)*, ms41	MALE STERILE 41	male sterile41, male sterile 41, male sterile-41				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061215			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
228	MS42	ms42(t)*, ms42	MALE STERILE 42	male sterile42, male sterile 42, male sterile-42				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061216			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
229	MS43	ms43(t)*, ms43	MALE STERILE 43	male sterile43, male sterile 43, male sterile-43				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061217			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
230	MS44	ms44(t)*, ms44	MALE STERILE 44	male sterile44, male sterile 44, male sterile-44				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061218			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
231	MS45	ms45(t)*, ms45	MALE STERILE 45	male sterile45, male sterile 45, male sterile-45				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061219			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
232	MS46	ms46(t)*, ms46	MALE STERILE 46	male sterile46, male sterile 46, male sterile-46, male sterile-47				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060556			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
233	MS47	ms47(t)*, ms47	MALE STERILE 47	male sterile47, male sterile 47, male sterile-47				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061220			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
234	MS48	ms48(t)*, ms48	MALE STERILE 48	male sterile48, male sterile 48, male sterile-48				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061221			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
235	MS49	ms49(t)*, ms49	MALE STERILE 49	male sterile49, male sterile 49, male sterile-49				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061222			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
236	MS5	ms5(ms3), ms3, ms5	MALE STERILE 5	male sterile5, male sterile 5, male sterile-5				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060542			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
237	MS50	ms50(t)*, ms50	MALE STERILE 50	male sterile50, male sterile 50, male sterile-50				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061223			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
238	MS51	ms51(t)*, ms51	MALE STERILE 51	male sterile51, male sterile 51, male sterile-51				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061224			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
239	MS52	ms52(t)*, ms52	MALE STERILE 52	male sterile52, male sterile 52, male sterile-52				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061225			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
240	MS53	ms53(t)*, ms53, male sterile-53	MALE STERILE 53	male sterile53, male sterile 53, male sterile-53				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061226			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
241	MS54	ms54(t)*, ms54	MALE STERILE 54	male sterile54, male sterile 54, male sterile-54				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061227			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
242	MS55	ms55(t)*, ms55	MALE STERILE 55	male sterile55, male sterile 55, male sterile-55				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061228			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
243	MS56	ms56(t)*, ms56	MALE STERILE 56	male sterile56, male sterile 56, male sterile-56				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061229			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
244	MS57	ms57(t)*, ms57, male sterile-57	MALE STERILE 57	male sterile57, male sterile 57, male sterile-57				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061230			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
245	MS58	ms58(t)*, ms58	MALE STERILE 58	male sterile58, male sterile 58, male sterile-58				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061231			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
246	MS59	ms59(t)*, ms59	MALE STERILE 59	male sterile59, male sterile 59, male sterile-59				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061232			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
247	MS6	ms6(ms4), ms6, ms4	MALE STERILE 6	male sterile6, male sterile 6, male sterile-6				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060543			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
248	MS60	ms60(t)*, ms60	MALE STERILE 60	male sterile60, male sterile 60, male sterile-61, male sterile-60				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061233			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
249	MS61	ms61(t)*, ms61	MALE STERILE 61	male sterile61, male sterile 61, male sterile-62, male sterile-61				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061234			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
250	MS62	ms62(t)*, ms62	MALE STERILE 62	male sterile62, male sterile 62, male sterile-63, male sterile-62				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061235			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
251	MS63	ms63(t)*, oms, ms63	MALE STERILE 63	male sterile63, male sterile 63, open hull male sterile, male sterile-63				PO:0009039; glume ; PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061236			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility, TO:0000474 - glume opening	PO:0009039 - glume , PO:0009066 - anther 
252	ND	Nd*, Nd	EARLY NODAL DIFFERENTIATION	Early nodal differentiation				Early differentiation of stem nodes was found when 30 day old seedlings werw transplanted in the water-logged fields. PO:0005001; basal axillary shoot ; PO:0000003; whole plant.	 Vegetative organ - Culm			GR:0060571			GO:0007275 - multicellular organismal development	TO:0000285 - nodal tillering, TO:0000103 - deepwater stress	PO:0000003 - whole plant , PO:0005001 - basal axillary shoot system 
253	NP	np*, np	NUDE PANICLE	nude panicle				PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060575			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
254	NR1	Nr1*, Nr1	NODAL ROOTING 1	Nodal rooting1, Nodal rooting 1, Nodal rooting-1				Complementary with Nr2. Nodal rooting is considered to be related with floating babit. [552] PO:0003005; nodal root ; PO:0000003; whole plant.	 Vegetative organ - Culm			GR:0060576			GO:0007275 - multicellular organismal development	TO:0000404 - nodal rooting, TO:0000103 - deepwater stress	PO:0000003 - whole plant , PO:0003005 - nodal root 
255	NR2	Nr2*, Nr2	NODAL ROOTING 2	Nodal rooting2, Nodal rooting 2, Nodal rooting-2				Complementary with Nr1. Nodal rooting is considered to be related with floating habit. [552] 003005; nodal root ; PO:0000003; whole plant.	 Vegetative organ - Culm			GR:0060577			GO:0007275 - multicellular organismal development	TO:0000103 - deepwater stress, TO:0000404 - nodal rooting	PO:0000003 - whole plant 
256	OMS	oms	OPEN HULL MALE STERILE	open hull male sterile				Unmatched size of palea and lemma causes an open hull. The anthers are small and white, without viable pollen. Sterile. Even the seed obtained by the pollination with normal plant is small. PO:0009039; glume ; PO:0006318; floret (sensu Poaceae) ; PO:0009025; leaf ; PO:0009010; seed. GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060581			GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development	TO:0000474 - glume opening, TO:0000326 - leaf color, TO:0000199 - genic male sterility, TO:0000437 - male sterility, TO:0000392 - sterility or fertility trait	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009039 - glume 
257	ORL1	orl1	ORGANLESS 1	organless1, organless 1, organless embryo-1				Despite of embryo enlargement, no differentitation occurs in shoot and radicule. Defferentiation in scutellum is normal. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060586			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
259	PAP1	pap1	PANICLE PHYTOMER 1	panicle phytomer1, panicle phytomer 1, panicle phytomer-1		pap1-1, pap1-2, pap1-3		Rachis phytomers are strongly affected, especially a severe reduction of rachis internode length and an increase in rachis internode number. Rudimentary and empty glumes are elongated. Expression becomes stronger in the order of pap1-1, pap1-2 and pap1-3. PO:0006321; second order inflorescence branch ; PO:0009038; palea ; PO:0009049; inflorescence ; PO:0009037; lemma.	 Reproductive organ - Inflorescence			GR:0060594			GO:0007275 - multicellular organismal development	TO:0000052 - primary branching of inflorescence, TO:0000040 - panicle length, TO:0000089 - panicle type, TO:0000240 - sterile lemma length, TO:0000152 - panicle number, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0006321 - primary inflorescence branch , PO:0009037 - lemma , PO:0009038 - palea , PO:0009049 - inflorescence 
261	PC	Pc	PURPLE COLEOPTILE	Purple coleoptile				Make coleoptile purple. PO:0020104; leaf sheath.	 Coloration - Anthocyanin			GR:0060597			GO:0009812 - flavonoid metabolic process	TO:0000367 - basal leaf sheath color	PO:0020104 - leaf sheath 
262	PCS	pcs	PENTACHLOROBENZYL ALCOHOL SUSCEPTIBILITY	pentachlorobenzyl alcohol susceptibility				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060598			GO:0009628 - response to abiotic stimulus	TO:0000058 - herbicide sensitivity, TO:0000482 - chemical stress sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
263	PD	Pd, Pd(a), Pd(b)	PENDANT PANICLE	Pendant panicle				The pendant nature of panicle is controlled by three complementary genes (Rao and Misro 1968).	 Reproductive organ - Inflorescence			GR:0060599			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
264	PGI3	Pgi3	PHOSPHOGLUCOISOMERASE 3	Phosphoglucoisomerase3, Phosphoglucoisomerase 3, Phosphoglucoisomerase-3	PHOSPHOGLUCOISOMERASE 3	Pgi3-0, Pgi3-1		P(ST-H,PAGE-TC). Double band. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060604			GO:0004347 - glucose-6-phosphate isomerase activity		
265	PII	Pi i, Pii, Pi-i, Pii(t)	PYRICULARIA ORYZAE RESISTANCE-I	Pyricularia oryzae resistance-i, Magnaporthe grisea resistance-I Blast resistance I			9	Resistant to rice blast disease. Varieties 'Ishikari-shiroge' and 'Fujisaka 5' have this gene. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance			GR:0060615			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000510 - penetrated to total root ratio	PO:0020141 - stem node , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
266	PIIS2	Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5	PYRICULARIA ORYZAE RESISTANCE-IS-2	PPyricularia oryzae resistance-is-2, Magnaporthe grisea resistance-is2, Blast resistance is2				PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Imochi shirazu (Japonica).	 Tolerance and resistance - Disease resistance			GR:0060618			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000512 - Plant survival percentage under submergence	PO:0009025 - vascular leaf 
267	PISE2	Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2	PYRICULARIA ORYZAE RESISTANCE-SE-2	Pyricularia oryzae resistance-se-2, Magnaporthe grisea resistance-se2, Blast resistance se2				Original line is Sensho (Japonica). The independent genes Rb1, Rb2 and Rb3 acted additively to control resistance to blast fungus (Goto 1970). PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060623			GO:0009620 - response to fungus	TO:0000517 - relative shoot elongation under submergence, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
268	PISE3	Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3	PYRICULARIA ORYZAE RESISTANCE-SE-3	Pyricularia oryzae resistance-se-3, Magnaporthe grisea resistance-se3, Blast resistance se3				Original line is Sensho (Japonica). The independent genes Rb1, Rb2 and Rb3 acted additively to control resistance to blast fungus (Goto 1970). PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060624			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000518 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
269	PISH	Pi sh, Pish, Pi-sh, Pish(t)	PYRICULARIA ORYZAE RESISTANCE SH	Pyricularia oryzae resistance-sh, Magnaporthe grisea resistance-sh, Blast resistance sh			1	PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling. Original lines are Shin 2, Norin 22 and Nihonbare (Japonica). Map position (148.7-154.8 cM). LOC_Os01g57340. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os01g0782100	LOC_Os01g57340.1	GR:0060625			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000519 - rooting depth, TO:0000468 - leaf blast disease resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
270	PI15	Pi15(t), Pi15, RMg34.	PYRICULARIA ORYZAE RESISTANCE 15	Pyricularia oryzae resistance 15, Magnaporthe grisea resistance-15, Blast resistance 15			9	Resistant  to several races of Pyricularia grisea. [RGN13:18]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is GA25 (Japonica). Map position (31.3-34.9 cM).	 Tolerance and resistance - Disease resistance			GR:0060644			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000490 - protein composition related trait, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
271	PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2	PYRICULARIA ORYZAE RESISTANCE 3	Pyricularia oryzae resistance 3, Magnaporthe grisea resistance-3, Blast resistance 3			9	resistant to several races of Pyricularia grisea. [RGN13:15]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Pi3(t) and Pi5(t) are the same resistance gene. Original line is Pai-Kan-Tao (Japonica). The two NB-LRR genes Pi5-1 and Pi5-2 are required for rice Pi5-mediated resistance to M. oryzae (Lee et al. 2009). EU869185(LOC_Os09g15840=Os09g0327600) = Pi5-1, EU869186(LOC_Os09g15850=Os09g0327800) = Pi5-2	 Tolerance and resistance - Disease resistance	Os09g0327600/Os09g0327800		GR:0060631			GO:0009620 - response to fungus, GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000500 - leaf blast disease resistance	PO:0009025 - vascular leaf 
272	PI67	Pi67(t)*, Pi67, Pi67(t)	PYRICULARIA ORYZAE RESISTANCE 67	Pyricularia oryzae resistance from Tsuyuake, Magnaporthe grisea resistance from Tsuyuake, Magnaporthe grisea resistance-67, Blast resistance 67				Pyricularia oryzae resistance from Tsuyuake. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060656			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000478 - abscisic acid concentration	PO:0009025 - vascular leaf 
273	PIB1	Pib1*, pib1*t, Pib1	PYRICULARIA ORYZAE RESISTANCE B 1	Pyricularia oryzae resistance from Lemont, Magnaporthe grisea resistance from Lemont, Magnaporthe grisea resistance-b1				PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060658			GO:0009620 - response to fungus	TO:0000472 - vascular bundle number, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
274	PIB2	Pib2*, Pilm2, Pib2	PYRICULARIA ORYZAE RESISTANCE B 2	Pyricularia oryzae resistance from Lemont, Magnaporthe grisea resistance from Lemont, Magnaporthe grisea resistance-b2				PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060659			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000473 - grain shattering, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
275	PIQ1	Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1	PYRICULARIA ORYZAE RESISTANCE Q 1	Pyricularia oryzae resistance from Teqing, Magnaporthe grisea resistance from Teqing, Magnaporthe grisea resistance-tq1, Blast resistance tq1			6	Pyricularia oryzae resistance from Teqing.  Original line is Tequing/Teqing (Indica). Map position (103.0-124.4 cM). PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060660			GO:0009620 - response to fungus	TO:0000474 - glume opening, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
276	PIQ2	Piq2*, Pitq2*, Pitq2	PYRICULARIA ORYZAE RESISTANCE Q 2	Pyricularia oryzae resistance from Teqing, Magnaporthe grisea resistance from Teqing, Magnaporthe grisea resistance-tq2, Blast resistance tq2				Pyricularia oryzae resistance from Teqing. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060661			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000475 - adventitious root thickness, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
277	PIQ3	Piq3*, Pitq3*, Pitq3	PYRICULARIA ORYZAE RESISTANCE Q 3	Pyricularia oryzae resistance from Teqing, Magnaporthe grisea resistance from Teqing, Magnaporthe grisea resistance-tq3, Blast resistance tq3				Pyricularia oryzae resistance from Teqing. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060662			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000476 - growth hormone content, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
278	PIQ4	Piq4*, Pitq4*, Pitq4	PYRICULARIA ORYZAE RESISTANCE Q 4	Pyricularia oryzae resistance from Teqing, Magnaporthe grisea resistance from Teqing, Magnaporthe grisea resistance-tq4, Blast resistance tq4				Pyricularia oryzae resistance from Teqing. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060663			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
279	PJ	Pj	PURPLE JUNCTURA	Purple junctura				Make junctura (leaf collar) purple. PO:0006012; leaf collar.	 Coloration - Anthocyanin			GR:0060667			GO:0009812 - flavonoid metabolic process	TO:0000364 - leaf collar color	PO:0006012 - leaf collar 
280	PJB	Pjb	PURPLE JUNCTURA BACK	Purple junctura back				Make junctura (leaf collar) back purple. PO:0006012; leaf collar.	 Coloration - Anthocyanin			GR:0060668			GO:0009812 - flavonoid metabolic process	TO:0000364 - leaf collar color	PO:0006012 - leaf collar 
282	PLA1	pla1, OsPLA1, plt1, CYP78A11	PLASTOCHRON 1	plastochron1, plastochron 1, plastochron-1, Cytochrome P450 78A11, Protein PLASTOCHRON1	CYTOCHROME P450 78A11	pla1-1, pla1-2, pla1-3, pla1-4, pla1/cyp78a11, pla1	10	Leaves differentiate 2 times faster in vegetative phase. In reproductive phase, the primordia of primary rachis change into shoots, showing heterochrony mutation in which the program in vegetative phase expressed in reproductive phase continuously. Similar to leafy head (lhd), but no allelism information due to the loss of original lhd stock. EC=1.14.-.-  Q7Y1V5. PO:0020148; shoot apical meristem ; PO:0020122; inflorescence axis. GRO:0007140; B-reproductive stage ; GRO:0007189; panicle stage PA1 ; GRO:0007139; A-vegetative stage.	 Vegetative organ - Leaf,  Reproductive organ - panicle,  Heterochrony,  Coloration - Anthocyanin	Os10g0403000	LOC_Os10g26340.1	GR:0061116			GO:0009055 - electron carrier activity, GO:0004497 - monooxygenase activity, GO:0051781 - positive regulation of cell division, GO:0055114 - oxidation reduction, GO:0007275 - multicellular organismal development, GO:0009739 - response to gibberellin stimulus, GO:0009740 - gibberellic acid mediated signaling, GO:0048366 - leaf development, GO:0020037 - heme binding, GO:0010229 - inflorescence development	TO:0000166 - gibberellic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0000369 - vegetative growth time, TO:0000730 - mitotic cell cycle trait, TO:0000659 - phyllochron, TO:0002638 - shoot meristem development, TO:0000050 - inflorescence branching	PO:0001083 - inflorescence development stage , PO:0020122 - inflorescence axis , PO:0020148 - shoot apical meristem 
284	PLG	Plg	PURPLE LIGULE	Purple ligule				Make ligule purple. PO:0020105; ligule.	 Coloration - Anthocyanin			GR:0060675			GO:0009812 - flavonoid metabolic process	TO:0000197 - ligule color	PO:0020105 - ligule 
285	PLM	Plm(Pla), Pla, Plm	PURPLE LEAF MARGIN	Purple leaf margin, Purple leaf apex				Make leaf margin purple. PO:0020039; leaf lamina.	 Coloration - Anthocyanin			GR:0060676			GO:0009812 - flavonoid metabolic process	TO:0000299 - leaf lamina color	PO:0020039 - leaf lamina 
286	PM	Pm(Sp), Sp, Pm	PURPLE SEPTUM	Purple septum				Make septum purple. PO:0020141; stem node ; PO:0005005; shoot internode.	 Coloration - Anthocyanin			GR:0060677			GO:0009812 - flavonoid metabolic process	TO:0000059 - node color, TO:0000426 - internode color	PO:0005005 - shoot internode , PO:0020141 - stem node 
287	PMR	Pmr(Plm), Plm, Pmr	PURPLE MIDRIB	Purple midrib				Make midrib purple. PO:0020039; leaf lamina.	 Coloration - Anthocyanin			GR:0061117			GO:0009812 - flavonoid metabolic process	TO:0000299 - leaf lamina color	PO:0020039 - leaf lamina 
288	PMS	pms(t)*	PHOTOPERIOD SENSITIVE MALE STERILITY	photoperiod-sensitive male sterility					 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0009648 - photoperiodism, GO:0007275 - multicellular organismal development	TO:0000009 - genic male sterility-photoperiod sensitive	
289	PNR	Pnr	PURPLE NODAL RING	Purple nodal ring				Make nodal ring purple. PO:0020141; stem node.	 Coloration - Anthocyanin			GR:0060684			GO:0009812 - flavonoid metabolic process	TO:0000059 - node color	PO:0020141 - stem node 
290	PROL	Prol*, Pro6	PROLAMIN	Prolamin, Prolamin-6	PROLAMIN			PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060697			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
291	PRS	prs	PROPANIL SUSCEPTIBILITY	propanil susceptibility				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060700			GO:0009628 - response to abiotic stimulus	TO:0000058 - herbicide sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
292	PS3	Ps3(Ps2), Ps2, Ps3	PURPLE STIGMA 3	Purple stigma3, Purple stigma 3, Purple stigma-3				Make stigma purple. PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060705			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
293	PSH	Psh	PURPLE LEAF SHEATH	Purple leaf sheath				Make leaf sheath purple. PO:0020104; leaf sheath.	 Coloration - Anthocyanin			GR:0060707			GO:0009812 - flavonoid metabolic process	TO:0000367 - basal leaf sheath color	PO:0020104 - leaf sheath 
294	PU	Pu	PURPLE PULVINUS	Purple pulvinus				Make pulvinus purple. PO:0020141; stem node.	 Coloration - Anthocyanin			GR:0060709			GO:0009812 - flavonoid metabolic process	TO:0000059 - node color	PO:0020141 - stem node 
295	PX	Px	PURPLE LEAF AXIL	Purple leaf axil				Make leaf axil purple. PO:0020039; leaf lamina.	 Coloration - Anthocyanin			GR:0060710			GO:0009812 - flavonoid metabolic process	TO:0000299 - leaf lamina color, TO:0000059 - node color	PO:0020039 - leaf lamina 
296	R1*	R1*	FERTILITY RESTORATION1	Fertility restoration1				nuclear gene for 'WA' cytoplasm	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration						GO:0009566 - fertilization	TO:0000308 - male fertility restoration trait, TO:0000498 - female fertility restoration trait	
297	R2*	R2*	FERTILITY RESTORATION2	Fertility restoration1				additive action	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration						GO:0009566 - fertilization	TO:0000308 - male fertility restoration trait, TO:0000498 - female fertility restoration trait	
298	R5MT	R5MT*	RESISTANCE TO 5METHYLTRYPTOPHAN	Resistance to 5methyltryptophan, Resistance to 5 methyltryptophan				Dominant gene. Seedling and callus is resistant to 5-methyltryprophan. Resistant plants contain higher level of free amino acids in their seed, seedling and callus than those of susceptible plants. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060711			GO:0009628 - response to abiotic stimulus	TO:0000482 - chemical stress sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
299	RAL1	ral1*, ral1	RADICLELESS 1	radicleless1, radicleless 1, radicleless-1		ral1-1. ral-1-2		This mutant fails to develop radicle. PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Root			GR:0060722			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait, TO:0000257 - root branching	PO:0009009 - plant embryo , PO:0009089 - endosperm 
300	RCN3	rcn3	REDUCED CULM NUMBER 3	reduced culm number-3				Few tillers under low temperature conditions.  Panicle number is extremely low, and plant height is reduced to 50% of that of the original strain, AC-15.  [256] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060728			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000432 - temperature response trait, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000152 - panicle number	PO:0009047 - stem 
301	RCN4	rcn4	REDUCED CULM NUMBER 4	reduced culm number-4				Few tillers under low temperature conditions. Panicle number is highly reduced, and plant height is about 70% of that of the original strain, AC-34. PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060729			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000152 - panicle number, TO:0000346 - tiller number, TO:0000576 - stem length, TO:0000432 - temperature response trait, TO:0000207 - plant height	PO:0009047 - stem 
302	RCN6	rcn6	REDUCED CULM NUMBER 6	reduced culm number-6				Few tillers. [RGN13:14] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060731			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000346 - tiller number, TO:0000576 - stem length	PO:0009047 - stem 
303	RCP	Rcp	RECEPTOR GENE FOR PEROXIDASE	Receptor gene for peroxidase	RECEPTOR GENE FOR PEROXIDASE	Rcp-2A, Rcp-4A			 Biochemical character			GR:0060732			GO:0004601 - peroxidase activity		
305	RE1	re1	REDUCED EMBRYO 1	reduced embryo-1, REDUCED EMBRYO1		re1, re1-1, re1-2		Significant development of endosperm results in the restriction of space for embryo development, embryo size being reduced to 35-45% of that of the wild type. Size of every organ in embryo is reduced. This gene controls the development of endosperm. [708] PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. GO:2000014: regulation of endosperm development. RE1 and RE2 act upstream of GE in embryo-facing endosperm and are epistatic to GE in endosperm, but non-epistatic in embryo. They have opposite roles to GE in embryo/endosperm size balance (Nagasawa et al. 2013).	 Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm			GR:0060734			GO:0009887 - organ morphogenesis, GO:0009960 - endosperm development, GO:0009888 - tissue development	TO:0000587 - endosperm quality, TO:0000575 - endosperm related trait, TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0009089 - endosperm 
306	RE2	re2	REDUCED EMBRYO 2	reduced embryo2, reduced embryo 2, reduced embryo-2		re2, re2-1	10	Significant development of endosperm results in the restriction of space for embryo development, embryo size being reduced to 35-45% of that of the wild type. Size of every organ in embryo is reduced. This gene controls the development of endosperm, being located on the short arm of chromosome 10 flanked by CAPS markers C10 7.7 (2.6cM) and C10 11.5 (2.6cM). PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. RE1 and RE2 act upstream of GE in embryo-facing endosperm and are epistatic to GE in endosperm, but non-epistatic in embryo. They have opposite roles to GE in embryo/endosperm size balance (Nagasawa et al. 2013).	 Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm			GR:0060735			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis, GO:0009960 - endosperm development	TO:0000064 - embryo related trait, TO:0000575 - endosperm related trait, TO:0000587 - endosperm quality	PO:0009009 - plant embryo , PO:0009089 - endosperm 
308	RE3	re3	REDUCED EMBRYO 3	reduced embryo3, reduced embryo 3, reduced embryo-3		re3		Extensive development os endosperm results in the restriction of space for embryo development, embryo size being reduced to 35-45% of that of the wild type. Size of every organ in embryo is reduced. This gene controls the development of endosperm. [708] PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm			GR:0060736			GO:0009960 - endosperm development, GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000587 - endosperm quality, TO:0000575 - endosperm related trait, TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0009089 - endosperm 
310	REG1-2A	Reg1-2A, Reg1	REGULATOR GENE FOR PEROXIDASE1	Regulator gene for peroxidase1, Regulator gene for peroxidase 1, Regulator gene for peroxidase-1, Regulator-1	REGULATOR GENE FOR PEROXIDASE1				 Biochemical character			GR:0060737			GO:0030234 - enzyme regulator activity, GO:0004601 - peroxidase activity		
311	REG2-4A	Reg2-4A, Reg2	REGULATOR GENE FOR PEROXIDASE2	Regulator gene for peroxidase2, Regulator gene for peroxidase 2, Regulator gene for peroxidase-2, Regulator-2	REGULATOR GENE FOR PEROXIDASE2				 Biochemical character			GR:0060738			GO:0004601 - peroxidase activity, GO:0030234 - enzyme regulator activity		
312	RF AK(RFJ)	Rf ak(Rfj), Rf7, Rfak, Rfj	POLLEN FERTILITY RESTORATION-AK	Pollen fertility restoration-ak, Pollen fertility restoration-7				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060739			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
315	RHZ	Rhz(t), Rhz1	RHIZOME GENE	Rhizomatous from O. longistaminata, Rhizomatous from O. longistaminata-1				Rhizomes appears at the lower nodes. Introduced from O. longistaminata. PO:0009005; root.	 Vegetative organ - Root			GR:0060755			GO:0007275 - multicellular organismal development	TO:0000257 - root branching	PO:0009005 - root 
316	RLB-4C	RLB-4C, Reg3	REGULATOR GENE FOR PEROXIDASE	Regulator gene for peroxidase, Regulator gene for peroxydase (leaf blade), Regulator-3					 Biochemical character			GR:0061125			GO:0004601 - peroxidase activity, GO:0030234 - enzyme regulator activity		
317	RLS-4C	RLS-4C, Reg4	REGULATOR GENE FOR PEROXIDASE	Regulator gene for peroxidase, Regulator gene for peroxydase (leaf blade), Regulator-4					 Biochemical character			GR:0061126			GO:0004601 - peroxidase activity, GO:0030234 - enzyme regulator activity		
318	RP	rp(t)(rpt), rtp, rp	RETARDED PANICLE DEVELOPMENT	retarded panicle development				Inhibition of panicle development under low temperature condition.  Even under higher temperature, panicle length is reduced and spikelets is deformed showing low seed setting. PO:0009049; inflorescence ; PO:0009046; flower.	 Reproductive organ - Inflorescence			GR:0060782			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower , PO:0009049 - inflorescence 
319	RT	rt	ROOT GROWTH INHIBITION	root growth inhibition				Induced from a dwarf mutant line, Fukei 71 treated with 0.3% solution of ethylene imine for 2 hrs. at 30C.  Inhibit root elongation and root number.  Plant height is not affected, remaining almost the same as that of the normal in early stage. (Futsuhara & Kitano, 1985) PO:0009005; root.	 Vegetative organ - Root			GR:0060784			GO:0007275 - multicellular organismal development	TO:0000227 - root length, TO:0000084 - root number	PO:0009005 - root 
320	SA	S A(t)*, S-A(t)	HYBRID STERILITY DUE TO ANTHER INDEHISCENCE-A	Hybrid sterility due to anther indehiscence-A	HYBRID STERILITY DUE TO ANTHER INDEHISCENCE-A			complementary. Hybrid sterility due to anther indehiscence. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060785			GO:0007275 - multicellular organismal development	TO:0000499 - flower anatomy and morphology trait, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
321	SA2	S A2(A2), S A2, A2	HYBRID STERILITY A 2	Hybrid sterility-A-2, Sporophytic F2 sterility				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060787			GO:0007275 - multicellular organismal development	TO:0000046 - f2-generation sterility, TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009046 - flower 
322	S A2(S2)	s a2(s2), x2, s2, s a2	HYBRID STERILITY-A-2	hybrid sterility-a-2, hybrid sterility-a2				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060799			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
323	SB	S B(t)*, S-B(t)	HYBRID STERILITY DUE TO ANTHER INDEHISCENCE-B	Hybrid sterility due to anther indehiscence-B				Hybrid sterility due to anther indehiscence. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060788			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower 
324	SB1	S B1(B1), B1, S B1	HYBRID STERILITY B 1	Hybrid sterility-B, Sporophytic F2 sterility B				sporophytic F2 sterility. duplicate. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060789			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000046 - f2-generation sterility, TO:0000437 - male sterility	PO:0009046 - flower 
325	SC	S C(t)*	HYBRID STERILITY DUE TO ANTHER INDEHISCENCE-C	Hybrid sterility due to anther indehiscence-C				Hybrid sterility due to anther indehiscence. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060791			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower 
326	SD2	s d2	HYBRID STERILITY D 2	hybrid sterility-d-2, hybrid sterility-d2				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060803			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009046 - flower 
327	S	s Kr*, skr	SUPPRESSOR FOR GRAIN SIZE	suppressor for grain size (Kr1, Kr2)				PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060807				TO:0000391 - seed size	PO:0009010 - seed 
328	S12	S12(t)	HYBRID STERILITY 12	Hybrid sterility12, Hybrid sterility 12, Hybrid sterility-12				Pollen killer.  Pollen killing due to allelic interaction. [RGN12:20] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060819			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
329	S14	S14(t)	HYBRID STERILITY 14	Hybrid sterility14, Hybrid sterility 14, Hybrid sterility-14				Pollen killer.  Pollen killing due to allelic interaction. [RGN12:21] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060821			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
330	S2		HYBRID STERILITY 2	Hybrid sterility2, Hybrid sterility 2, Hybrid sterility-2		S2-a .		Sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060809			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0009046 - flower 
331	S4		HYBRID STERILITY 4	Hybrid sterility4, Hybrid sterility 4, Hybrid sterility-4		S4-a .		Sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060811			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
332	SA	Sa*, Hst16	F1 POLLEN STERILITY A	F1 pollen sterility-a, Hybrid sterility-16				One-locus sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060792			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
333	SB	Sb, TRP1	STEM BORER RESISTANCE	Stem borer resistance				Stem borer resistance  (Dutt et al. 1980, Kaneda 1988) PO:0009047; stem ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060837			GO:0009625 - response to insect	TO:0000454 - stem borer resistance	PO:0000003 - whole plant , PO:0009047 - stem 
334	SB	Sb*, Hst17, S24, F5-Du	F1 POLLEN STERILITY B	F1 pollen sterility-b, Hybrid sterility-17			5	one-locus sporogametophytic interaction. 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060793			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
335	SC1	Sc1, RRs1	SCLEROTIUM ORYZAE RESISTANCE 1	Sclerotium oryzae resistance1, Sclerotium oryzae resistance 1, Rhizoctonia solani (sheath blight) resistance-1, Sclerotia disease resistance-1				duplicate. PO:0020104; leaf sheath.	 Tolerance and resistance - Disease resistance			GR:0061127			GO:0009620 - response to fungus	TO:0000255 - sheath blight disease resistance, TO:0000323 - stem rot disease resistance	PO:0020104 - leaf sheath 
336	SC2	Sc2, RRs2	SCLEROTIUM ORYZAE RESISTANCE 2	Sclerotium oryzae resistance2, Sclerotium oryzae resistance 2, Rhizoctonia solani (sheath blight) resistance-2, Sclerotia disease resistance-2				PO:0020104; leaf sheath.	 Tolerance and resistance - Disease resistance			GR:0061128			GO:0009620 - response to fungus	TO:0000323 - stem rot disease resistance, TO:0000255 - sheath blight disease resistance	PO:0020104 - leaf sheath 
338	SD	Sd*, Hst19	F1 POLLEN STERILITY D	F1 pollen sterility-d, Hybrid sterility-19				one-locus sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060795			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
340	SD2	sd2	SEMIDWARF 2	semidwarf2 (CI11033), semidwarf 2, semidwarf-2				PO:0009047; stem.	 Vegetative organ - Culm			GR:0060843			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
341	SD3	sd3	SEMIDWARF 3	semidwarf3 (CI9858), semidwarf 3, semidwarf-3				PO:0009047; stem.	 Vegetative organ - Culm			GR:0060844			GO:0009826 - unidimensional cell growth	TO:0000207 - plant height, TO:0000576 - stem length	PO:0009047 - stem 
342	SD4	sd4	SEMIDWARF 4	semidwarf4 (CI11034), semidwarf 4, semidwarf-4				Semidwarf. Pleiotropic effect of small seed size and slightly earlier maturity. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060845			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000391 - seed size, TO:0000469 - days to maturity	PO:0009047 - stem 
343	SD5	sd5	SEMIDWARF 5	semidwarf5 (Short Labelle), semidwarf 5, semidwarf-5				Semidwarf gene. Obtained from the X2 generation of radiation treatment on the long grain variety 'Labelle' in 1978. Plant height is 20cm shorter than the original variety. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060846			GO:0009826 - unidimensional cell growth	TO:0000146 - seed length, TO:0000207 - plant height, TO:0000576 - stem length	PO:0009047 - stem 
344	SD6	sd6(t), sd6	SEMIDWARF 6	semidwarf6 (R34), semidwarf-6(R34), semidwarf-6, semidwarf 6				This semidwarf gene shows an open-stemmed plant type and a larger number of spikelets per panicle. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060847			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000068 - lodging incidence, TO:0000139 - grains per panicle, TO:0000207 - plant height	PO:0009047 - stem 
345	SD8	sd8(t), sd8	SEMIDWARF 8	semidwarf8 (AB60e'3), semidwarf-8(AB-60e'-3), semidwarf-8, semidwarf 8				15 to 19 cm shorter than T65.  [RGN12:23] PO:0009047; stem.	 Vegetative organ - Culm			GR:0060849			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
346	SDRA	Sdra (Sd), Sdra, Sdua, Sdr6	SEED DORMANCY A	Seed dormancy-a, Seed dormancy-6				Controls seed dormancy. Active in the A phase of three water intake patterns in the germination process. Complementary with Sdrb. [501] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Dormancy			GR:0060856			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
347	SDRB	Sdrb, Sdub, Sdr7	SEED DORMANCY B	Seed dormancy-b, Seed dormancy-7				Controls seed dormancy. Active in the A phase of three water intake patterns in the germination process. Complementary with Sdra. [501] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Dormancy			GR:0060857			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
348	SE	Se*, Hst20	F1 POLLEN STERILITY E	F1 pollen sterility-e, Hybrid sterility-20				one-locus sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060796			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
349	SE4	Se4(t)	PHOTOSENSITIVITY 4	Photosensitivity4, Photosensitivity 4, Photoperiod-sensitivity-4				"Weak response to photoperiod in \"Nanjing 11\". [RGN10:8] PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage."	 Reproductive organ - Heading date			GR:0060863			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading, TO:0000469 - days to maturity	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
350	SE6	se6(t)	PHOTOSENSITIVITY 6	photosensitivity6 (W1623), photosensitivity6, photosensitivity 6, photosensitivity-6				Suppressed by Ef1.  Recessive gene. [RGN12:23] PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060865			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
351	SE7	se7(t)	PHOTOSENSITIVITY 7	photosensitivity7 (W593), photosensitivity 7, photoperiod-sensitivity-7(W593), photoperiod-sensitivity-7, photosensitivity7				Suppressed by Ef1.  Recessive gene. [RGN12:23] PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060866			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
352	SF	Sf*, Hst21	F1 POLLEN STERILITY F	F1 pollen sterility-f, Hybrid sterility-21				one-locus sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060797			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
353	SG	Sg	PERMEABILITY OF TESTA TO WATER	Permeability of testa to water				Controls seed dormancy. Active in B phase of three water intake patterns in the germination process. [501] PO:0009010; seed.	 Seed - Physiological traits - Dormancy			GR:0060872			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
354	SHD	Shd(t)*, Shd	SHOOT DIFFERENTIATION FROM SEED-CALLUS	Shoot differentiation from seed-callus, Shoot differentiation from seed callus				PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Shoot apical meristem(SAM)			GR:0060878			GO:0009790 - embryonic development	TO:0000243 - invitro regeneration ability	PO:0000003 - whole plant , PO:0009011 - plant structure 
361	SPO1	spo1*, shp1, spt1	SHOOT POSITION 1	shoot position1, shoot position 1, shoot position-1				PO:0009009; embryo ; PO:0020144; apical meristem ; PO:0020031; radicle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060890			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0020031 - radicle , PO:0020144 - apical meristem 
362	SHP2	shp2	SHEATHED PANICLE 2	sheathed panicle2, sheathed panicle 2, sheathed panicle-2				Though this is almost the same as Shp-1, the panicle base is discernible.  Recessive. [256] PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060886			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000145 - internode length, TO:0000089 - panicle type, TO:0000165 - panicle exsertion	PO:0009049 - inflorescence , PO:0020142 - stem internode 
363	SK1	Sk1, Fgr	SCENTED KERNEL 1	Scented kernel1, Scented kernel 1, Scented kernel-1				PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009010; seed.	 Seed - Physiological traits - Taste			GR:0060893			GO:0009698 - phenylpropanoid metabolic process	TO:0000087 - aroma	PO:0000003 - whole plant , PO:0009010 - seed , PO:0009011 - plant structure 
364	SM	Sm	STEM MAGGOT RESISTANCE	Stem maggot resistance				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060898			GO:0009625 - response to insect	TO:0000332 - rice whorl maggot resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
365	SPL11	spl11, spl11*, OsPUB11, PUB11	SPOTTED LEAF 11	spotted leaf11, spotted leaf-11, Protein spotted leaf 11, Cell death-related protein SPL11, plant U-box-containing protein 11, U-box protein 11	CELL DEATH-RELATED PROTEIN SPL11	spl11	12	Rust colored spots which start appearing at maximum tillering stage and continue until maturity. The spots are distributed throughout the leaf blade with maximum concentration along the midrib. EC=6.3.2.- A2ZLU6(indica). Q0IMG9(japonica). PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. AY652589, AY652590. a U-Box/Armadillo Repeat Protein.  LOC_Os12g38210. class II PUB protein (U-box + ARM/HEAT). EST: CB680406, BF430451, CF305067, AT003699, AT003719, AA749599, AU173870, AU197209, BI812454. KC611075-KC611087 (O. sativa and wild rice species, partial cds). U-box domain and ARM repeat domain protein.	 Reproductive organ - Heading date,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os12g0570000	LOC_Os12g38210.1	GR:0060912			GO:0009614 - disease resistance, GO:0031347 - regulation of defense response, GO:0042742 - defense response to bacterium, GO:0019941 - modification-dependent protein catabolic process, GO:0016567 - protein ubiquitination, GO:0005488 - binding, GO:0050832 - defense response to fungus, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0043067 - regulation of programmed cell death, GO:2000028 - regulation of photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0045824 - negative regulation of innate immune response, GO:0043066 - negative regulation of apoptosis	TO:0000063 - mimic response, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
366	SPR2	Spr2	SPREADING PANICLE 2	Spreading panicle2, Spreading panicle-2				PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060914			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
367	SPRA	Spra*	SPREADING PANICLE A	Spreading panicle-a				Complementary with Spr2. Primary panicle branches extend obliquely outward so that the panicles appear spreding and lax.[292] Spreading panicle. PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060918			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
368	SPRB	Sprb*	SPREADING PANICLE B	Spreading panicle-b				Primary panicle branches extend obiquely outward so that the panicles appear spreading and lax. Complementary with Spr1.[292] Spreading panicle. PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060919			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
370	SRT1	srt1*, srt1	SHORT ROOT 1	short root1, short root 1, short root-1				Root length of 5 days after emergence is 1.8cm in comparison with 9.5cm of its wild type. PO:0009005; root.	 Vegetative organ - Root			GR:0060920			GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
371	SRT2	srt2*, srt2	SHORT ROOT 2	short root2, short root 2, short root-2				Root length of 5 days after emergence is 3.4cm in comparison with 8.5 cm of wild type. PO:0009005; root.	 Vegetative organ - Root			GR:0060921			GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
372	SRT3	srt3*, srt3	SHORT ROOT 3	short root3, short root 3, short root-3				Growth of seminal root is suppressed and stops growing by the 2nd day after germination. PO:0009005; root.	 Vegetative organ - Root			GR:0060922			GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
373	SRT4	srt4*, srt4	SHORT ROOT 4	short root4, short root 4, short root-4				"Growth of seminal root is suppressed immediately after germination. This mutant was obtained from the M2 of variety \"Oochikara\". PO:0009005; root."	 Vegetative organ - Root			GR:0060923			GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
374	SUG1	Su g1	SUPPRESSOR FOR LONG STERILE LEMMAS G 1	Suppressor for long sterile lemmas (g1), SUPPRESSOR FOR LONG STERILE LEMMAS G1				This gene suppresses the long length of empty glume of the lemma side, when it co-exists with g1 for long empty glumes. [299] PO:0009037; lemma.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn			GR:0060941			GO:0007275 - multicellular organismal development	TO:0000240 - sterile lemma length	PO:0009037 - lemma 
375	SUSE1	SuSe1(t)*, Su Se1(t)*	SUPPRESSOR FOR PHOTOSENSITIVITY SE 1	Suppressor for photosensitivity (Se1), Suppressor for photoperiod-sensitivity (Se1)				PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060942			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
376	SUCIF	SuCinf*, SUCINF, Su-Cif, Su Cinf	SUPPRESSOR FOR CROSS-INCOMPATIBILITY CINF	Suppressor for cross-incompatibility (Cif), Suppressor for cross-incompatibility (Cinf)				PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060940			GO:0009856 - pollination, GO:0009566 - fertilization	TO:0000035 - incompatibility trait	PO:0009082 - spikelet floret 
377	SUD1	Sud1(t)*, Sud1(t), Sud1	SUCCINATE DEHYDROGENASE 1	Succinate dehydrogenase1, Succinate dehydrogenase 1, Succinate dehydrogenase-1	SUCCINATE DEHYDROGENASE 1	Sud1-1(t), Sud1-2(t), Sud1-3(t)			 Biochemical character			GR:0060944			GO:0000104 - succinate dehydrogenase activity		
378	SUD2	Sud2(t)*, Sud2(t), Sud2	SUCCINATE DEHYDROGENASE 2	Succinate dehydrogenase2, Succinate dehydrogenase 2, Succinate dehydrogenase-2	SUCCINATE DEHYDROGENASE 2				 Biochemical character			GR:0060945			GO:0000104 - succinate dehydrogenase activity		
379	SUD3	Sud3(t)*, Sud3(t), Sud3	SUCCINATE DEHYDROGENASE 3	Succinate dehydrogenase3, Succinate dehydrogenase 3, Succinate dehydrogenase-3	SUCCINATE DEHYDROGENASE 3	Sud3-0(t), Sud3-1(t)			 Biochemical character			GR:0060946			GO:0000104 - succinate dehydrogenase activity		
380	TH	Th	HARD THRESHABILITY	Hard threshability				PO:0009049; inflorescence. GRO:0007045; 09-mature grain stag.	 Seed - Physiological traits - Shattering			GR:0061143			GO:0009838 - abscission	TO:0000406 - panicle threshability	PO:0009049 - inflorescence 
381	TMS	tms(t)*, ms83	THERMOSENSITIVE MALE STERILITY	thermosensitive male sterility, male sterile-83				26 Zhaizao S. PO:0009073; stigma ; PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060958			GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus	TO:0000067 - genic male sterility-thermo sensitive, TO:0000044 - stigma exsertion	PO:0009046 - flower , PO:0009066 - anther , PO:0009073 - stigma 
382	TMS2	tms2, ms81, tms-2	THERMOSENSITIVE MALE STERILITY 2	thermosensitive male sterility2, thermosensitive male sterility-2, thermosensitive male sterility 2, male sterile-81				Male sterile under higher temperatures. PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060956			GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus	TO:0000437 - male sterility, TO:0000067 - genic male sterility-thermo sensitive	PO:0009046 - flower , PO:0009066 - anther 
383	TPIL(T)*	Tpil(t)*, Tpi1(t), Tpi1	TRIOSEPHOSPHATE ISOMERASE1	Triosephosphate isomerase1, Triosephosphate isomerase 1, Triosephosphate isomerase-1	TRIOSEPHOSPHATE ISOMERASE1	Tpi1-1(t), Tpi1-2(t)			 Biochemical character			GR:0060964			GO:0004807 - triose-phosphate isomerase activity		
384	TSB	tsb, ts2	TWISTED STEM-B	twisted stem-b, twisted stem-2				Complementary with tsa. Twisted growing habit of stem. [81]	 Vegetative organ - Culm			GR:0060968			GO:0007275 - multicellular organismal development		
385	TSV2	tsv2	RICE TUNGRO SPHERICAL VIRUS RESISTANCE 2	rice tungro spherical virus resistance2, rice tungro spherical virus resistance 2, rice tungro spherical virus resistance-2				Resistance to rice tungro spherical virus.	 Tolerance and resistance - Disease resistance			GR:0060971			GO:0009615 - response to virus	TO:0000413 - rice tungro virus resistance	
386	TUVA	Tuva, Tuv3	TUNGRO RESISTANCE A	Tungro resistance-a, Tungro resistance-3				complementary	 Tolerance and resistance - Disease resistance			GR:0060973			GO:0009814 - defense response, incompatible interaction, GO:0051607 - defense response to virus	TO:0000413 - rice tungro virus resistance	
387	TUVB	Tuvb, Tuv4	TUNGRO RESISTANCE B	Tungro resistance-b, Tungro resistance-4					 Tolerance and resistance - Disease resistance			GR:0060974			GO:0051607 - defense response to virus, GO:0009814 - defense response, incompatible interaction	TO:0000413 - rice tungro virus resistance	
388	V(KL1111)	v(KL1111)	VIRESCENT-KL 1111	virescent-(KL1111)				virescent-(KL1111)	 Coloration - Chlorophyll						GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	
389	V(KL406)	v(KL406)	VIRESCENT-KL 406	virescent-(KL406)				virescent-(KL406)	 Coloration - Chlorophyll						GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	
390	VEP1	vep1*, vep1	VARIABLE EMBRYO PHENOTYPES 1	variable embryo phenotypes1, variable embryo phenotypes 1, variable embryo phenotypes-1				PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060992			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
391	VEP2	vep2*, vep2	VARIABLE EMBRYO PHENOTYPES 2	variable embryo phenotypes2, variable embryo phenotypes 2, variable embryo phenotypes-2				PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060993			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
392	VEP3	vep3*, vep3	VARIABLE EMBRYO PHENOTYPES 3	variable embryo phenotypes3, variable embryo phenotypes 3, variable embryo phenotypes-3				PO:0009009; embryo ; PO:0020031; radicle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060994			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0020031 - radicle 
393	WEF1	wEfl	WEAKENING EARLY HEADING OF EF 1	weakening early heading of Ef1, weakening effect for Fl21.2			10	When wEf1 was combined with Ef1, plants headed a few days later than Ef1 alone. Closely linked with Ef1 on choromosome 10. PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060999			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0009049 - inflorescence 
394	WBPH2	Wph2	WHITEBACKED PLANTHOPPER RESISTANCE 2	Whitebacked planthopper resistance2, Whitebacked planthopper resistance 2, Whitebacked planthopper resistance-2					 Tolerance and resistance - Insect resistance			GR:0061005			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
395	WBPH3	Wph3	WHITEBACKED PLANTHOPPER RESISTANCE 3	Whitebacked planthopper resistance3, Whitebacked planthopper resistance 3, Whitebacked planthopper resistance-3					 Tolerance and resistance - Insect resistance			GR:0061006			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
396	WBPH4	wph4	WHITEBACKED PLANTHOPPER RESISTANCE 4	whitebacked planthopper resistance4, whitebacked planthopper resistance 4, whitebacked planthopper resistance-4					 Tolerance and resistance - Insect resistance			GR:0061007			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
397	WBPH5	Wph5	WHITEBACKED PLANTHOPPER RESISTANCE 5	Whitebacked planthopper resistance5, Whitebacked planthopper resistance 5, Whitebacked planthopper resistance-5					 Tolerance and resistance - Insect resistance			GR:0061008			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
398	WPH6(T)*	Wph6(t)*, Wph6(t), Wph6	WHITEBACKED PLANTHOPPER RESISTANCE6	Whitebacked planthopper resistance6, Whitebacked planthopper resistance 6, Whitebacked planthopper resistance-6					 Tolerance and resistance - Insect resistance			GR:0061009			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
399	XA NM(T)*	xa nm(t)*	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE NM	Xanthomonas oryzae pv. oryzae resistance-nm					 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
400	XA11	Xa11(Xa pt), Xa11, Xapt	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 11	Xanthomonas oryzae pv. oryzae resistance 11, Xanthomonas campestris pv. oryzae resistance-11, Xanthomonas oryzae pv. oryzae resistance-11			3	Xa11 was located between RM347 and KUX11 at genetic distances of 2.0 and 1.0 cM, respectively. (Goto et al. 2009)	 Tolerance and resistance - Disease resistance			GR:0061019			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
401	XA16	Xa16	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 16	Xanthomonas oryzae pv. oryzae resistance 16, Xanthomonas campestris pv. oryzae resistance-16, Xanthomonas oryzae pv. oryzae resistance-16				Dominant resistant gene to Japanese isolates J8581 and H8584, but susceptible to all other Japanese isolates.[RGN6:3]	 Tolerance and resistance - Disease resistance			GR:0061024			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
402	XA17	Xa17	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 17	Xanthomonas oryzae pv. oryzae resistance 17, Xanthomonas campestris pv. oryzae resistance-17, Xanthomonas oryzae pv. oryzae resistance-17				Dominant resistant gene to Japanese isolates J8513. [RGN6:3]	 Tolerance and resistance - Disease resistance			GR:0061025			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
403	XA18	Xa18	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 18	Xanthomonas oryzae pv. oryzae resistance 18, Xanthomonas campestris pv. oryzae resistance-18, Xanthomonas oryzae pv. oryzae resistance-18				Dominant resistant gene to Burmese isolates BM8417 and BM8429. [RGN6:4]	 Tolerance and resistance - Disease resistance			GR:0061026			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
404	XA19	xa19	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 19	Xanthomonas oryzae pv. oryzae resistance 19, Xanthomonas campestris pv. oryzae resistance-19, Xanthomonas oryzae pv. oryzae resistance-19				Recessive resistant gene to Philippine isolates 1, 2, 3, 4, 5 and 6.  Mutant induced by N-methyl-N-nitrosourea.  [RGN7:17] .	 Tolerance and resistance - Disease resistance			GR:0061027			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
405	XA20	xa20	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 20	Xanthomonas oryzae pv. oryzae resistance 20, Xanthomonas campestris pv. oryzae resistance-20, Xanthomonas oryzae pv. oryzae resistance-20				Recessive resistant gene to Philippine isolates 1, 2, 3, 4, 5 and 6.  Mutant induced by N-methyl-N-nitrosourea.  [RGN7:17] .	 Tolerance and resistance - Disease resistance			GR:0061028			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
406	XA8	xa8	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 8	Xanthomonas oryzae pv. oryzae resistance 8, Xanthomonas campestris pv. oryzae resistance-8, Xanthomonas oryzae pv. oryzae resistance-8			7	Resistant to bacterial blight disease.	 Tolerance and resistance - Disease resistance			GR:0061017			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
407	XDH1	Xdh1(t)*, Xdh1(t), Xdh1	XANTHINE DEHYDROGENASE 1	xanthine dehydrogenase, Xanthine dehydrogenase-1	XANTHINE DEHYDROGENASE 1	Xdh1-1(t), Xdh1-2(t)		P(PAGE-TC).	 Biochemical character			GR:0061038			GO:0004854 - xanthine dehydrogenase activity		
408	YDV	Ydv	YELLOW DWARF DISEASE RESISTANCE	Yellow dwarf disease resistance					 Tolerance and resistance - Disease resistance			GR:0061040			GO:0006952 - defense response	TO:0000292 - yellow dwarf disease resistance	
409	YL	yl*	CHLOROPHYLL MUTANT	chlorophyll mutant (unstable gamete)				From the 1st leaf and above, they become  yellowish white. Most seedlings die at the second leaf stage. For the survived ones, though the new leaf is yellowish white, later chlorophyll is recovered  and becomes green.	 Coloration - Chlorophyll						GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	
410	YP	yp*, gh4	YELLOW PANICLE	yellow panicle, gold hull and internode-4				Yellow-green hulls and leaves. They are visible until maturity at which time they become indistiguishable from normal straw color hulls. This gene has a pleiotropic effect for early maturity. PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0061045			GO:0009648 - photoperiodism, GO:0015995 - chlorophyll biosynthetic process, GO:0003700 - transcription factor activity	TO:0000077 - shoot anatomy and morphology trait, TO:0000264 - lemma and palea color, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000137 - days to heading	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
411	YSL	ysl	YELLOW LEAF SPOT	yellow leaf spot				This mutant shows yellow spots in the leaves. [499] PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Leaf			GR:0061046			GO:0015996 - chlorophyll catabolic process	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0000003 - whole plant , PO:0009011 - plant structure 
412	Z(KL1207)	z(KL1207)	ZEBRA	zebra(KL1207)					 Coloration - Chlorophyll						GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf	
413	ZLH1	Zlh1	ZIGZAG LEAFHOPPER RESISTANCE 1	Zigzag leafhopper resistance1, Zigzag leafhopper resistance 1, Zigzag leafhopper resistance-1					 Tolerance and resistance - Insect resistance			GR:0061061			GO:0002213 - defense response to insect	TO:0000082 - zigzag leafhopper resistance	
414	ZLH2	Zlh2	ZIGZAG LEAFHOPPER RESISTANCE 2	Zigzag leafhopper resistance2, Zigzag leafhopper resistance 2, Zigzag leafhopper resistance-2					 Tolerance and resistance - Insect resistance			GR:0061062			GO:0002213 - defense response to insect	TO:0000082 - zigzag leafhopper resistance	
415	ZLH3	Zlh3	ZIGZAG LEAFHOPPER RESISTANCE 3	Zigzag leafhopper resistance3, Zigzag leafhopper resistance 3, Zigzag leafhopper resistance-3					 Tolerance and resistance - Insect resistance			GR:0061063			GO:0002213 - defense response to insect	TO:0000082 - zigzag leafhopper resistance	
416	AL8	al8, alK8	ALBINO 8	albino8, albino 8, albino-8			1	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060027			GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
417	ALD2	Ald2*(ald2), Ald2, ald2	ALDOLASE 2	Aldolase2, Aldolase 2, Aldolase-2	ALDOLASE 2		1		 Biochemical character			GR:0060032			GO:0016832 - aldehyde-lyase activity		
418	AMY1B	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c	ALPHA-AMYLASE 1B	Alpha-amylase1B, Alpha-amylase isozyme C, Alpha-amylase isozyme 1B, Alpha-amylase-1B, Amylase-2, ALPHA-AMYLASE 1-3, alpha-amylase c, high PI alpha amylase	ALPHA-AMYLASE 1B		1	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. A2WPU3(indica). Q0JMV4(japonica). M59350. X52240. D10417 (partial cds).	 Biochemical character	Os01g0357400	LOC_Os01g25510.1	GR:0060044			GO:0005509 - calcium ion binding, GO:0004556 - alpha-amylase activity, GO:0005975 - carbohydrate metabolic process		
419	ARF2	Arf2*, Arf2, ARF-2	ADP RIBOSYLATION FACTOR 2	ADP ribosylation factor(ARF)2, ADP ribosylation factor (ARF)-2, ADP ribosylation factor-2, ADP ribosylation factor 2	ADP RIBOSYLATION FACTOR 2		1		 Biochemical character			GR:0060061			GO:0006886 - intracellular protein transport, GO:0006471 - protein amino acid ADP-ribosylation		
420	CHL5	chl5	CHLORINA 5	chlorina5, chlorina 5, chlorina-5			1	PO:0009025; leaf ; PO:0006343; axillary shoot. GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0060122			GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000496 - carotenoid content, TO:0000346 - tiller number, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0006343 - axillary shoot system , PO:0009025 - vascular leaf 
421	D18	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1	DWARF 18	hosetsu-waisei(d18-h), Akibare waisei(d18-AD), Waito-D(d18-dy), Kotaketamanishiki(d18-k), GA 3beta-hydroxylase2, GA 3beta-hydroxylase 2, GA 3-oxidase 2, Gibberellin(GA)-3 beta-hydroxylase-2	GIBBERELLIN 3BETA-HYDROXYLASE 2	d18-h, d18-AD, d18-dy, d18-k	1	LOC_Os01g08220. One of the alleles of d18. Plant is about 15cm high with stout dark green leaves but haing nearly normal grains. Significant response to gibberellin. Mutant at OsGA3ox2 locus. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.This gene controls some steps of gibberelline synthesis. The defect of this process causes dwarfism of rice. This gene corresponds to the location of D18 gene, at the distal end of short arm of Chromosome 1. Loss of function of this gene induces d18 dwarf. GA 3beta-hydroxylase, Putative 3b-hydroxylase. PO:0000003; whole plant ; PO:0009046; flower.  EU179398-EU179402 (wild rice species). GA3ox1 in Zhao et al. 2016.	 Biochemical character,  Vegetative organ - Culm	Os01g0177400	LOC_Os01g08220.1	GR:0020076,GR0061382			GO:0009628 - response to abiotic stimulus, GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development, GO:0009741 - response to brassinosteroid stimulus, GO:0009686 - gibberellin biosynthetic process, GO:0042446 - hormone biosynthetic process, GO:0016707 - gibberellin 3-beta-dioxygenase activity, GO:0009685 - gibberellin metabolic process, GO:0009742 - brassinosteroid mediated signaling	TO:0000401 - plant growth hormone sensitivity, TO:0000492 - leaf shape, TO:0002675 - gibberellic acid content, TO:0000299 - leaf lamina color, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000499 - flower anatomy and morphology trait, TO:0000576 - stem length	PO:0009025 - vascular leaf , PO:0009046 - flower , PO:0000003 - whole plant , PO:0009047 - stem , PO:0009049 - inflorescence 
423	D2	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11	DWARF EBISU	ebisu dwarf, dwarf-2, cytochrome P450 CYP90D2, Ebisu dwarf/Dwarf2, Dwarf2, SMALL GRAIN 11	C-23 HYDROXYLASE	d2, d2-1, d2-2, d2-3, smg11	1	LOC_Os01g10040. AP003244. Q94IW5. The shape of stem and leaf resembles to d1 but the shape of spikelet is almost normal. TO:0000847: panicle anatomy and morphology trait.  GO:0030307: positive regulation of cell growth.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os01g0197100	LOC_Os01g10040.2, LOC_Os01g10040.1	GR:0060185			GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0016132 - brassinosteroid biosynthetic process, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid, GO:0007275 - multicellular organismal development, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009742 - brassinosteroid mediated signaling, GO:0005506 - iron ion binding	TO:0000262 - panicle shape, TO:0000397 - grain size, TO:0000132 - basal internode diameter, TO:0000567 - tiller angle, TO:0000382 - 1000-seed weight, TO:0006032 - panicle size, TO:0000040 - panicle length, TO:0000391 - seed size, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000135 - leaf length, TO:0000299 - leaf lamina color, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0002759 - grain number	
424	D26	d26, dwf22	DWARF 7237	7237 dwarf, dwarf-26			1	Plant height is about two thirds of normal type. PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060205			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
425	D54	d54(d K5), dK5, d54, dwf35	DWARF KYUSHU 5	dwarf Kyushu5, dwarf Kyushu 5, dwarf Kyushu-5, dwarf-54			1	"Dwarf induced by chemical mutagen on \"Kinmaze\" variety. PO:0009047; stem ; PO:0009010; seed."	 Vegetative organ - Culm			GR:0060219			GO:0007275 - multicellular organismal development	TO:0000391 - seed size, TO:0000207 - plant height, TO:0000576 - stem length	PO:0009010 - seed , PO:0009047 - stem 
426	D55	d55(d K6), dK6, dwf36, d55	DWARF KYUSHU 6	dwarf Kyushu6, dwarf Kyushu-6, dwarf Kyushu 6, dwarf-55			1	"Dwarf induced by chemical mutagen on \"Kinmaze\" variety. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf ; PO:0009010; seed."	 Vegetative organ - Culm			GR:0060220			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000391 - seed size, TO:0000370 - leaf width, TO:0000089 - panicle type, TO:0000576 - stem length	PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
427	DM-1*	Dm-1*	SHORT CULM SHOWING DM-TYPE	Short culm showing dm-type			1	incomplete dominance. [391]	 Vegetative organ - Culm							TO:0000207 - plant height	
428	EST10	Est10	ESTERASE 10	Esterase10, Esterase 10, Esterase-10	ESTERASE 10	Est10-0, Est10-1, Est10-2, Est10-3, Est10-4, Est10-5	1	Monomers. S(PAGE-TC). The band migrates slower than that of Est5. Active in seed, and faint in leaves showing some modification. Est10-4 is specifically found in wild rice, O. rufipogon.	 Biochemical character			GR:0060314			GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016787 - hydrolase activity		
429	EST5	Est5	ESTERASE 5	Esterase5, Esterase 5, Esterase-5	ESTERASE 5	Est5-0, Est5-1, Est5-2.	1	Monomer. S & P(PAGE-TC,Page-TBE, single band), P & C(ST-H, alpha-NAc-specific double black band).	 Biochemical character			GR:0060309			GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016787 - hydrolase activity		
430	GA9	ga9	GAMETOPHYTE GENE 9	gametophyte gene9, gametophyte gene 9, gametophyte gene-9			1		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060351			GO:0019953 - sexual reproduction		
431	GF2	gf2	GOLD FURROWS OF HULL 2	gold furrows of hull2, gold furrows of hull 2, gold furrows of hull-2			1	From panicle exsertion up to maturity, the lemma and palea of this mutant have golden furrows that are very intense, thus giving the hulls golden color. [399] PO:0009088; seed coat. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0060364			GO:0009812 - flavonoid metabolic process	TO:0000484 - seed shape, TO:0000264 - lemma and palea color	PO:0009088 - seed coat 
432	GLU1	Glu1(Srp1, Gt2), Srp, Gt2, Glu1	GLUTELIN 1	Rice glutelin1, Rice glutelin 1, Rice glutelin-1	GLUTELIN 1	Glu1-1, Glu1-2	1	This gene controls rice seed protein glutelin alpha-5a and alpha-5b subunits. [313] PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060394			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
433	GLU1	Glu1t*(Glu1), Glu1t*, Glu1t, Glu1, Glu12	GLUTELIN 1	Glutelin subunit1, Glutelin subunit 1, Glutelin subunit-1, Rice glutelin-12	GLUTELIN 1		1	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060401			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
434	GLU2	Glu2t*(Glu2), Glu2t*, Glu2t, Glu2, Glu13	GLUTELIN 2	Glutelin subunit2, Glutelin subunit 2, Glutelin subunit-2, Rice glutelin-13	GLUTELIN 2		1	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060402			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
435	GLU3	glu3(t)*, glu10, LGLU3	GLUTELIN 3	lack of glutelin subunit3, lack of glutelin subunit 3, lack of glutelin subunit-3, rice glutelin-10	GLUTELIN 3		1	The acidic subunits of glutelin appear as several sopts in two-dimentional electrophoresis. glu3 is deficient in spot 3a. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060392			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
436	GLU3	Glu3t*(Glu3), Glu3t*, Glu3t, Glu3, Glu14	GLUTELIN 3	Glutelin subunit3, Glutelin subunit 3, Glutelin subunit-3, Rice glutelin-14	GLUTELIN 3		1	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060403			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
437	GOT1	Got1, Aat1, OsAAT, GOT-A	GLUTAMATE OXALOACETATE TRANSAMINASE 1	Aspartate aminotransferase1, Aspartate aminotransferase 1, Aspartate aminotransferase-1	GLUTAMATE OXALOACETATE TRANSAMINASE 1	Got1-1, Got1-2, Got1-3	1	Dimer.	 Biochemical character			GR:0060427			GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity		
438	ICD1	Icd1	ISOCITRATE DEHYDROGENASE 1	Isocitrate dehydrogenase1, Isocitrate dehydrogenase 1, Isocitrate dehydrogenase-1	ISOCITRATE DEHYDROGENASE 1	Icd1-1, Icd1-2, Icd1-3 (Idh-A)	1	Dimer. P(ST-H).	 Biochemical character			GR:0060469			GO:0004448 - isocitrate dehydrogenase activity, GO:0004449 - isocitrate dehydrogenase (NAD+) activity		
439	ILB	Ilb*, Ilb	INHIBITOR OF LEAF BLADE COLOR	Inhibitor of leaf blade color, Inhibitor for purple leaf blade			1	Inhibitor for purple leaf blade. This inhibitory activity is unique in strictly leaf blade-specific. PO:0020104; leaf sheath.	 Coloration - Anthocyanin			GR:0060471			GO:0009812 - flavonoid metabolic process	TO:0000367 - basal leaf sheath color, TO:0000299 - leaf lamina color	PO:0020104 - leaf sheath 
440	IPSB	IPsb(IPs2), IPsb, IPs2, Ips4	INHIBITOR FOR PURPLE STIGMA B	Inhibitor for purple stigma-b (Psb), Inhibitor for purple stigma-b, Inhibitor for purple stigma-4			1	Inhibitor for purple stigma. Complementary with IPsa. PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060483			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
441	LGT	lgt	LONG TWISTED GRAIN	long twisted grain			1	PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060499			GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000484 - seed shape	PO:0009010 - seed 
442	MP1	mp1	MULTIPLE PISTIL 1	multiple pistil1, multiple pistil 1, multiple pistil-1			1	florets of this mutant have two or more functional pistils, and two kernels are enclosed within one lemma and palea. [228] PO:0009046; flower.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060531			GO:0009887 - organ morphogenesis	TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower 
443	MS M77(T)*	ms m77(t)*, ms69, msm77(t)*, MS M77, msm77	MALE STERILE(MILYANG 77MS)	male sterile(Milyang 77ms), male sterile (Milyang 77ms), male sterile-69			1	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060560			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
444	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1	ORYZACYSTATIN 1	Oryzacystatin1, Oryzacystatin-1, Oryzacystatin I, Oryzacystatin-I, Cysteine proteinase inhibitor 1, cystatin-I, oryzacystatin	ORYZACYSTATIN 1		1	P09229. J03469. M29259. U54702. AU055940, AU055941. D29717.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0803200	LOC_Os01g58890.4, LOC_Os01g58890.3, LOC_Os01g58890.2, LOC_Os01g58890.1	GR:0060578			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0006952 - defense response, GO:0030414 - peptidase inhibitor activity, GO:0005576 - extracellular region, GO:0004869 - cysteine-type endopeptidase inhibitor activity	TO:0000432 - temperature response trait, TO:0000054 - animal damage resistance	
445	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59	PYRICULARIA ORYZAE RESISTANCE T	Pyricularia oryzae resistance-t, Magnaporthe grisea resistance-t, Blast resistance 5		PitNpb, PitK59, PitNip, PitTakanari, PitKoshihikari, PitNipponbare, PitSenshou	1	PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. Original line is Tjahaja and K59 (Indica). AB379817, AB379815, AB379816, AB379822. KF741792-KF741826.	 Tolerance and resistance - Disease resistance	Os01g0149600	LOC_Os01g05630.1	GR:0060626		12.2	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000520 - stomatal closure rate	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
446	PRPA	Prpa(Pp), Pp, Prpa, Prp1	PURPLE PERICARP-A	Purple pericarp-a, Purple pericarp, Purple pericarp-1			1	Make pericarp purple in complementary action with Prp-b.[84] PO:0009088; seed coat. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060698			GO:0009812 - flavonoid metabolic process	TO:0000190 - seed coat color	PO:0009088 - seed coat 
447	RF3	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3	RESTORATION OF FERTILITY 3	Pollen fertility restoration-3			1	additive.  Fertility restoration (WA cytoplasm).  duplicate. Fertility restoration for WA cytoplasm, Pollen fertility restoration for WA cytoplasm. PO:0009066; anther. Four genes viz. mitochondrial-processing peptidase subunit alpha (Os01g0191500), pollen-specific protein (Os01g0192600), and two pentatricopeptide (PPR) genes, (Os01g0197450; Os01g0205200) were considered as candidate genes in the Rf3 locus (Suresh et al. 2012).	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060742			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
449	S13		HYBRID STERILITY 13	Hybrid sterility13, Hybrid sterility 13, Hybrid sterility-13			1	Pollen killer.  Pollen killing due to allelic interaction. [RGN12:20] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060820			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
450	S16		HYBRID STERILITY 16	Hybrid sterility16, Hybrid sterility 16, Hybrid sterility-16		S16-j, S16-n, S16-kn	1	Semi-sterility expressed as an allelic interaction such as S15-i/S15-du.  Segregation distortion in B1F1 due to the abortion of female gametes having S15-i. [RGN12:21] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060823			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
451	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1	SALT PROTEIN	salt tolerance, Salt tolerance-1, Salt stress-induced protein, Salt protein, Protein lectin-like, Protein mannose-binding lectin, 15 kda organ-specific salt-induced protein, Orysata, jacalin-related mannose-binding lectin, Mannose-Binding Lectin 1	SALT PROTEIN	osmbl1-3, osmbl1-14	1	Tolerance to salt stress and drought. A2WPN7(indica). Q0JMY8(japonica). PO:0009011; plant structure ; PO:0000003; whole plant. S45168. Z25811. AF285163. AU063562, AU172350, AU066156, AU161751. BF889486. a jacalin-related lectin. CB632549.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0348900	LOC_Os01g24710.1, LOC_Os01g24710.2, LOC_Os01g24710.3, LOC_Os01g24710.4	GR:0060835			GO:0010200 - response to chitin, GO:0002237 - response to molecule of bacterial origin, GO:0002238 - response to molecule of fungal origin, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0002213 - defense response to insect	TO:0000276 - drought tolerance, TO:0000429 - salt sensitivity, TO:0000432 - temperature response trait, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000261 - insect damage resistance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000608 - sodium content	PO:0000003 - whole plant , PO:0009011 - plant structure 
452	SH2	sh2	SHATTERING 2	shattering2, shattering 2, shattering-2		sh2	1	Expressed from the early stage of grain development, the gene forms the abscission layer at the base of steril lemma.  Dominant for abscission layer formation, but incompletely dominant or incompletely recessive for shattering. PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0060874				TO:0000473 - grain shattering	PO:0009010 - seed 
453	SSI1	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1	SHORT SECOND INTERNODE 1	Short second internode1 (dm-type), Short second internode 1, Short second internode-1(dm-type), Short second internode-1			1	No elongation of the second internode, i.e. dm-type of internode length ratio. Incomplete dominance. [391] PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060924			GO:0009826 - unidimensional cell growth	TO:0000145 - internode length, TO:0000207 - plant height	PO:0005005 - shoot internode 
454	SSI2	ssi2*, ssi2	SHORT SECOND INTERNODE 2	Short second internode2 (dm-type), Short second internode 2, short second internode-2(dm-type), short second internode-2			1	PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060925			GO:0009826 - unidimensional cell growth	TO:0000145 - internode length, TO:0000207 - plant height	PO:0005005 - shoot internode 
455	TOS1	Tos1*, Tos1, Osr14, Tos4	RETROTRANSPOSON 1	Retrotransposon1, Retrotransposon 1, Retrotransposon-1, LTR retrotransposon Osr14			1	AC069324: 8821-17191 (chromosome 10). X66521 (Tos1-1), X66522 (Tos1-2).	 Biochemical character			GR:0060961			GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
456	TPI	tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2	TRIOSEPHOSPHATE ISOMERASE	triosephosphate isomerase (cloned gene), triosephosphate isomerase, Triosephosphate isomerase, cytosolic, Triose-phosphate isomerase, triosephosphate isomerase-2, Cytosolic Triosephosphate lsomerase, Triose-phosphate isomerase	TRIOSEPHOSPHATE ISOMERASE		1	EC=5.3.1.1 P48494. L04967. M87064. D17766. D15092. MG756651. LOC_Os01g05490. OsTPI1.1 (LOC_Os01g05490.1), OsTPI1.2 (LOC_Os01g05490.2).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0147900	LOC_Os01g05490.2, LOC_Os01g05490.1	GR:0060963			GO:0006633 - fatty acid biosynthetic process, GO:0006094 - gluconeogenesis, GO:0006096 - glycolysis, GO:0004807 - triose-phosphate isomerase activity, GO:0006098 - pentose-phosphate shunt, GO:0005737 - cytoplasm		
457	TRYP	TRYP*(tin), TRYP*, tin, Tryp	TRYPSIN INHIBITOR	Trypsin-inhibitor	TRYPSIN INHIBITOR		1		 Biochemical character			GR:0060966			GO:0030304 - trypsin inhibitor activity		
458	TSA	tsa, ts1	TWISTED STEM-A	twisted stem-a, twisted stem-1			1	complementary with tsb. Twisted growing habit of stem. [81]	 Vegetative organ - Culm			GR:0060967			GO:0007275 - multicellular organismal development		
459	Z8	z8	ZEBRA 8	zebra8, zebra 8, zebra-8			1	This mutant shows distinct yellow bands on leaf blades at 35-60 days after seeding. The bands disappear at later growth stages. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0061054		72.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
460	FS2	fs2	FINE STRIPE 2	fine stripe2, fine stripe 2, fine stripe-2			1	White and fine speckles in leaves, caused by a chlorophyll deficiency. Unlike fs1 gene, the expression of this mutant is constant, giving stable expressivity and high penetrance. [499] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060337			GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
462	PAU	Pau	PURPLE AURICLE	Purple auricle			1	Make auricle purple. PO:0020106; auricle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060595		26.0	GO:0009812 - flavonoid metabolic process	TO:0000294 - auricle color, TO:0000077 - shoot anatomy and morphology trait	PO:0020106 - leaf sheath auricle 
463	PN	Pn	PURPLE NODE	Purple node			1	Connected with the distribution of color in leaf apex, leaf margin and the entire surface of stem node, collar, auricle and ligule. Among them, stem node is colored most strikingly. [298] PO:0020105; ligule ; PO:0020141; stem node ; PO:0020106; auricle ; PO:0006012; leaf collar ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060683		35.0	GO:0009812 - flavonoid metabolic process	TO:0000197 - ligule color, TO:0000294 - auricle color, TO:0000299 - leaf lamina color, TO:0000364 - leaf collar color, TO:0000059 - node color	PO:0006012 - leaf collar , PO:0009025 - vascular leaf , PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0020141 - stem node 
464	RL4	rl4(rl2), rl2, rl4, cul11	ROLLED LEAF 4	rolled leaf4, rolled leaf 4, rolled leaf-4, curl leaf-11			1	semi-rolled leaf. [132] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Vegetative organ - Leaf			GR:0060767		45.0	GO:0030154 - cell differentiation	TO:0000370 - leaf width, TO:0000085 - leaf rolling, TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
465	SHP1(EX)	Shp1(Ex), Ex, Shp1	SHEATHED PANICLE1	Sheathed panicle1, Sheathed panicle 1, Sheathed panicle-1			1	Caused by non-elongated first and second internodes.  Panicle is enclosed by the sheaths of the flag leaf and first leaf.  The lengths of the internodes except the first and second, are normal. A panicle base is not recognizable.  Dominant. [256] PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060885		63.0	GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000089 - panicle type, TO:0000145 - internode length, TO:0000165 - panicle exsertion	PO:0009049 - inflorescence , PO:0020142 - stem internode 
466	SHR1	shr1, sh1, shr	SHRUNKEN ENDOSPERM 1	shrunken endosperm1, shrunken endosperm 1, shrunken eudosperm-1, shrunken		shr1-s, shr1-a, shr	1	Endosperm is wrinkled, opaque and brittle [597]. The endosperm is stained blue-black by I-KI solution [440] PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. The starch mutant shrunken contains reduced activities of cytosolic ADP-glucose pyrophosphorylase (Kawagoe et al. 2005).	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances			GR:0060891		64.0	GO:0009568 - amyloplast starch grain	TO:0000587 - endosperm quality, TO:0000100 - shrunken endosperm, TO:0000266 - chalky endosperm, TO:0002655 - starch grain size, TO:0002658 - starch grain synthesis	PO:0009089 - endosperm 
467	RD	Rd, DFR, OsDFR, OS-DFR	RED PERICARP AND SEED COAT	Red pericarp and seed coat, dihydroflavonol 4-reductase, dihydroflavonol-4-reductase	DIHYDROFLAVONOL-4-REDUCTASE	Rd1, Rd2	1	Responsible for spreading the color of Rc, when Rc co-exists, giving a dark red pericarp and seed coat, or red rice.  Rd itself does not produce any pigment. [298] PO:0009088; seed coat ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. Y07956. AB003495, AB003496, AB010744, AB010745. LOC_Os01g44260.	 Biochemical character,  Coloration - Anthocyanin,  Coloration - Others,  Seed,  Tolerance and resistance - Stress tolerance	Os01g0633500	LOC_Os01g44260.1	GR:0060733		65.0	GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0009416 - response to light stimulus, GO:0044237 - cellular metabolic process, GO:0051555 - flavonol biosynthetic process, GO:0009812 - flavonoid metabolic process, GO:0009813 - flavonoid biosynthetic process, GO:0010023 - proanthocyanidin biosynthetic process	TO:0000190 - seed coat color, TO:0000487 - endosperm color, TO:0000707 - pericarp color, TO:0000075 - light sensitivity, TO:0000486 - seed color	PO:0009088 - seed coat , PO:0009089 - endosperm 
468	A	A(Sp), Sp, Ap	ANTHOCYANIN ACTIVATOR, RED PERICARP AND SEED COAT 	Anthocyanin activator, ANTHOCYANIN ACTIVATOR, Activator for anthocyanin pigmentation	DIHYDROFLAVONOL-4-REDUCTASE	A-S, A-E, A-d, A-m	1	Convert the precursor substance to anthocyanin. Complementary with C. PO:0006033; paleal apiculus. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060001		66.0	GO:0009812 - flavonoid metabolic process	TO:0000140 - apiculus color	PO:0006033 - paleal apiculus 
469	EST	Est I2*, EstI2*, Est15, ESTL2	ESTERASE 1	Esterase14, Esterase-I2, Esterase-15	ESTERASE 1	EstI2-aa, EstI2-bb, EstI2-nn	1	P(PAGE-TBE). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060319		72.0	GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
470	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1, SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2	SEMIDWARF 1	dee-geo-woo-gen dwarf(sd1-d), green revolution gene, semidwarf-1, GA C20oxidase2, semidwarf-1, reimei dwarf(sd1-r), Calrose76(sd1-3), Jikkoku(sd1-2). rice GA 20-oxidase2, GA 20-oxidase 2, Gibberellin 20 oxidase 2, Gibberellin C-20 oxidase 2, GA 20-oxidase 2, Protein semidwarf-1, semi-dwarf1	GIBBERELLIN 20 OXIDASE 2	sd1-a, sd1-2, sd1-c (=sd1-3), sd1-d(=sd1-1), sd1-r (=sd1-4), SD1-in, SD1-ja, SD1-EQ, SD1-GR, SD1C9285	1	"sd1-d is a dwarf gene of Taiwanese cultivar \"Dee-geo-woo-gen\". Dwarfness is due to low amount of active gibbelleric acid caused by mutation of GA20ox-2 gene. Most of the useful semi-dwarfs of practical value in rice breeding have allelic dwarfing genes at this locus irrespective of their source of origin. When introduced to Fujiminori background, culm length reduced by 18.4cm while sd1-r 12.1cm((Murai and Yamamoto, 2001, Murai et al. 2003). sd1-a (Plant height is shorter by 12 cm than original strain T65). sd1-c(Dwarfing gene obtained from Calrose treated by gamma-ray. Effect of dwarfness is equal to or less than sd1-d).AB077025, AF465255, AF465256, AY114310, U50333. AB213460-AB213479. GA20 oxidase, Gibberellin-20 oxidase, Putative gibberelin 20-oxidase. PO:0009047; stem. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AB538268(SD1-in), AB538265(SD1-ja). SD1-in and SD1-ja were published in Murai et al. (2011, online-published in 2010).This gene catalyzes successive oxidations at the C-20 site of GAs (gibberellic acids), and produces substrates for GA 3-oxidase. This gene is located on chromosome 1 at 149.1cM. Loss of function induces sd1. EC=1.14.11.- P0C5H5(indica), Q0JH50(japonica). AB633592-AB633625 (Asano et al. 2011). EU179376-EU179380 (wild rice species). AB633581-AB633625 (O. sativa and other wild rice species). JN541407-JN542382 (O. sativa and other wild rice species).  AB469066-AB469082 (O. sativa and other wild rice species). LOC_Os01g66100. AB669899 (indica)."	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os01g0883800	LOC_Os01g66100.1	GR:0060842		73.0	GO:0080006 - internode patterning, GO:0030912 - response to deep water, GO:0005506 - iron ion binding, GO:0009628 - response to abiotic stimulus, GO:0009685 - gibberellin metabolic process, GO:0009826 - unidimensional cell growth, GO:0016491 - oxidoreductase activity, GO:0045544 - gibberellin 20-oxidase activity, GO:0009686 - gibberellin biosynthetic process, GO:0055114 - oxidation reduction	TO:0000599 - enzyme activity, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000401 - plant growth hormone sensitivity, TO:0000576 - stem length, TO:0000524 - submergence tolerance, TO:0002675 - gibberellic acid content	PO:0009047 - stem , PO:0020142 - stem internode 
471	GA7	ga7	GAMETOPHYTE GENE 7	gametophyte gene7, gametophyte gene 7, gametophyte gene-7			1		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060349		77.0	GO:0019953 - sexual reproduction		
472	CHL6	chl6	CHLORINA 6	chlorina6, chlorina 6, chlorina-6			1	PO:0009025; leaf. GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0060123		84.0	GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000299 - leaf lamina color, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
473	D10	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10	DWARF 'KIKEIBANSHINRIKI OR TOYOHIKARIBUNWAI TILLERING	kikeibanshinriki or toyohikaribunwai tillering dwarf, dwarf-10, carotenoid cleavage dioxygenase 8, DWARF 10, DWARF10, carotenoid cleavage dioxygenase 8b	CATOTENOID DIOXYGENASE 8	ccd8, d10, dwarf10-2, d10-1, d10-2	1	"Similar to \"bunketsu-waito\". Low plant height and very many tillering. Grain shape is normal. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007043; 01-germination. GO:1901601: strigolactone biosynthetic process. ortholog of MAX4/RMS1/DAD1. Q8LIY8. one of MAX4 orthologues. LOC_Os01g54270. GO:1901698: response to nitrogen compound.  GO:1901601: strigolactone biosynthetic process.  GO:0090548: response to nitrate starvation."	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0746400	LOC_Os01g54270.1	GR:0060192		96.0	GO:0009926 - auxin polar transport, GO:0009733 - response to auxin stimulus, GO:0009965 - leaf morphogenesis, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0046872 - metal ion binding, GO:0010223 - secondary shoot formation, GO:0016124 - xanthophyll catabolic process, GO:0030154 - cell differentiation, GO:0009570 - chloroplast stroma, GO:0009507 - chloroplast, GO:0009826 - unidimensional cell growth, GO:0016121 - carotene catabolic process, GO:0009735 - response to cytokinin stimulus	TO:0000346 - tiller number, TO:0000145 - internode length, TO:0000476 - growth hormone content, TO:0000576 - stem length, TO:0000339 - stem thickness, TO:0000152 - panicle number, TO:0000586 - seminal root length, TO:0000167 - cytokinin sensitivity, TO:0001013 - lateral root number, TO:0000011 - nitrogen sensitivity, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000163 - auxin sensitivity	PO:0006343 - axillary shoot system , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020142 - stem internode 
474	AL4	al4, alK4	ALBINO 4	albino4, albino 4, albino-4			1	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060023		106.0	GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
475	RL1	rl1, cul8	ROLLED LEAF 1	rolled leaf1, rolled leaf 1, rolled leaf-1, curl leaf-8			1	Leaf blade is narrow and rolled cylindrically. [301] PO:0009051; spikelet ; PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060764		107.0	GO:0030154 - cell differentiation	TO:0000370 - leaf width, TO:0000492 - leaf shape, TO:0000085 - leaf rolling, TO:0000180 - spikelet fertility	PO:0009025 - vascular leaf , PO:0009051 - spikelet 
476	MS M67(T)*(MS18)	ms m67(t)*(ms18), ms68, msm67(t)*, ms18	MALE STERILE(MILYANG 67MS)	male sterile(Milyang 67ms)			1	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060559		118.0	GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
477	LAX1	lax, lax(lx), LAX1, lx, OsbHLH123	LAX PANICLE 1	lax panicle, Transcription factor LAX PANICLE, lax panicle1, basic helix-loop-helix protein 123, LAX PANICLE1	TRANSCRIPTION FACTOR LAX PANICLE 1	lax-1, lax-2, lax-3, lax-4, lax-5, lax1, lax1-1, lax1-6	1	lax-1: all lateral spikelets are absent, but fertile terminal spikelets are produced. lax-2: formation of panicle branches and spikekelets is severely reduced. Lateral spilelets are occasionally produced in lax-4 and lax-5. LAX locus is located on chromosome 1 in the region of 82 kb stradding marker C191A. Q7XAQ6. Basic helix-loop-helix (bHLH) transcription factor. PO:0009051; spikelet ; PO:0009049; inflorescence. AB115668, Axillary meristem formation. orthologue of maize BARRENSTALK1 (BA1). LOC_Os01g61480.	 Reproductive organ - Inflorescence,  Character as QTL - Yield and productivity	Os01g0831000	LOC_Os01g61480.1	GR:0060493		119.0	GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0030528 - transcription regulator activity, GO:0003677 - DNA binding	TO:0000501 - spikelet weight, TO:0002759 - grain number, TO:0000590 - grain weight, TO:0000152 - panicle number, TO:0000089 - panicle type, TO:0000050 - inflorescence branching, TO:0000436 - spikelet sterility	PO:0009049 - inflorescence , PO:0009051 - spikelet 
478	SPL6	spl6	SPOTTED LEAF 6	spotted leaf6, spotted leaf 6, spotted leaf-6			1	Relatively large reddish brown spots appear on leaves and they are similar to spl4. [137] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060907		125.0	GO:0006952 - defense response	TO:0000069 - variegated leaf, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
479	GA8	ga8	GAMETOPHYTE GENE 8	gametophyte gene8, gametophyte gene 8, gametophyte gene-8			1		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060350		132.0	GO:0019953 - sexual reproduction		
480	EG1	eg1, GY1	EXTRA GLUME 1	extra glume-1, extra glume 1, extra glume1, gaoyao1	PUTATIVE TRIACYLGLYCEROL LIPASE 1	eg1, eg1-1, eg1-2, eg1-3, eg1-4, eg1-5, eg1-6, gy1	1	LOC_Os01g67430. An extra glume between palea and lemma. PO:0009039; glume ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. EG1 is expressed strongly in inflorescence primordia and weakly in developing floral primordia.(2009) Q8S1D9. GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity. GO:0052739: phosphatidylserine 1-acylhydrolase activity. A High Temperature-Dependent Mitochondrial Lipase.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0900400	LOC_Os01g67430.1	GR:0060287		132.0	GO:0016042 - lipid catabolic process, GO:0048437 - floral organ development, GO:0008970 - phospholipase A1 activity, GO:0009873 - ethylene mediated signaling pathway, GO:0009507 - chloroplast, GO:0009723 - response to ethylene stimulus, GO:0009695 - jasmonic acid biosynthetic process, GO:0009408 - response to heat, GO:0030154 - cell differentiation	TO:0001007 - coleoptile length, TO:0006022 - floral organ development trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000657 - spikelet anatomy and morphology trait, TO:0002668 - jasmonic acid content, TO:0000544 - mesocotyl length, TO:0000173 - ethylene sensitivity	PO:0009010 - seed , PO:0009082 - spikelet floret , PO:0009039 - glume 
481	V6	v6	VIRESCENT 6	virescent6, virescent 6, virescent-6			1	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060985		149.0	GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000495 - chlorophyll content, TO:0000432 - temperature response trait, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
482	AE3	ae3(t)*, ae3	AMYLOSE EXTENDER 3	amylose extender3, amylose extender 3, amylose extender-3			2	High amylose mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060018			GO:0007275 - multicellular organismal development, GO:0000271 - polysaccharide biosynthetic process	TO:0000487 - endosperm color, TO:0000196 - amylose content, TO:0000098 - glutinous endosperm, TO:0000587 - endosperm quality	PO:0009089 - endosperm 
483	AMP1	Amp1(Lap1,LapF), LapF, Lap1, Amp1	AMINOPEPTIDASE 1	Aminopeptidase1, Aminopeptidase 1, Aminopeptidase-1	AMINOPEPTIDASE 1	Amp1-0, Amp1-1, Amp1-2, Amp1-3, Amp1-4, Amp1-5, Amp1-6	2	Monomer. S(PAGE-TC), P(PAGE-TC, ST-H). 2 bands appear in L & C(ST-H).	 Biochemical character			GR:0060036			GO:0004177 - aminopeptidase activity		
485	ANT	ant, ricANC1, ANC1	ADENOSINE NUCLEOTIDE TRANSLOCATOR	"adenine nucleotide translocator, \"ADP, ATP carrier protein, mitochondrial precursor\", \"ADP, ATP carrier protein, mitochondrial\", ADP/ATP translocase, ATP/ADP translocator"	ADENOSINE NUCLEOTIDE TRANSLOCATOR		2	LOC_Os02g48720. P31691. D12637. D10430 (partial cds). D22519, D23045.	 Biochemical character	Os02g0718900	LOC_Os02g48720.2, LOC_Os02g48720.1	GR:0060055			GO:0016020 - membrane, GO:0006810 - transport, GO:0005215 - transporter activity, GO:0005743 - mitochondrial inner membrane, GO:0000295 - adenine nucleotide transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015616 - DNA translocase activity, GO:0005488 - binding, GO:0055085 - transmembrane transport		
486	BC5	bc5, bn, bc-5	BRITTLE CULM 5	brittle node, brittle culm-5			2	The tillers break at the node when gently pulled.  The leaf blades break from leaf sheaths at the junctura upon gentle pulling. In contrast with the other brittle culm mutants, other plant parts are not brittle. [401] PO:0009047; stem ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Vegetative organ - Culm			GR:0060072			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009808 - lignin metabolic process, GO:0009531 - secondary cell wall, GO:0031225 - anchored to membrane, GO:0009834 - secondary cell wall biogenesis, GO:0005886 - plasma membrane	TO:0000108 - leaf shattering, TO:0000061 - node shattering, TO:0000051 - stem strength	PO:0009025 - vascular leaf , PO:0009047 - stem 
487	LRT2	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti	LATERAL ROOTLESS2	cyclophilin2, cyclophilin 2, cyclophilin-2, cyclophilin 19-2, LATERAL ROOTLESS 2, lateral-rootless 2, REDUCED GROWTH OF LATERAL ROOTS, reduced growth of lateral roots, lateral root-2, Peptidyl-prolyl cis-trans isomerase	CYCLOPHILIN 2	cyp2, cyp2-1, cyp2-2, lrt2, lrt2/oscyp2	2	AAA57046. BAF07631. L29469, L29470. D16134. D29701. EF576508. OsCYP-2 in Trivedi et al. 2013. Peptidylprolyl isomerase (cyclophilin). OsCYP19-1 in Kumari et al. 2014. GO:0072593: reactive oxygen species metabolic process. GO:2000023: regulation of lateral root development.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0121300	LOC_Os02g02890.1	GR:0060181,GR:0060514			GO:0050801 - ion homeostasis, GO:0006457 - protein folding, GO:0004600 - cyclophilin, GO:0048046 - apoplast, GO:0009734 - auxin mediated signaling pathway, GO:0007275 - multicellular organismal development, GO:0009629 - response to gravity, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0016018 - cyclosporin A binding, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0015994 - chlorophyll metabolic process, GO:0042743 - hydrogen peroxide metabolic process, GO:0048527 - lateral root development, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0009408 - response to heat, GO:0009733 - response to auxin stimulus	TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000495 - chlorophyll content, TO:0002693 - gravity response trait, TO:0000227 - root length, TO:0001013 - lateral root number	PO:0009005 - root , PO:0007520 - root development stage 
488	D1	D1*, Da, Dhl1	DWARF DAIKOKU 	Dominant lethal1 from O. longistaminata, Dominant hybrid lethal-1			2	Dominant lethal gene obtained from O. longistaminata.  complementary. PO:0009009; embryo ; PO:0006457; ovule (sensu Poaceae) ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060182			GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development, GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0020003 - plant ovule , PO:0009009 - plant embryo , PO:0009089 - endosperm 
489	EFX	Efx(t)*, Efx, Ef5(t)*	EARLINESS X	Earliness-x			2	complementary with Efy. PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060282			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000469 - days to maturity, TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
491	GLU10	Glu10t*	GLUTELIN 10	Glutelin subunit10	GLUTELIN 10		2		 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
492	GLU4	Glu4t*(Glu4), Glu4, Glu4t, Glu4t*, Glu15	GLUTELIN 4	Glutelin subunit4, Glutelin subunit 4, Glutelin subunit-4, Rice glutelin-15	GLUTELIN 4		2	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060404			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
493	GLU5	Glu5t*(Glu5), Glu5, Glu5t, Glu5t*	GLUTELIN 5	Glutelin subunit5, Glutelin subunit 5, Glutelin subunit-5, Rice glutelin-16	GLUTELIN 5		2	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060405			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
494	GLU6	Glu6t*(Glu6,GluB,C,E), GluE, GluB, Glu6t*, GluC, Glu6t, Glu6, Glu17	GLUTELIN 6	Glutelin subunit6, Glutelin subunit 6, Glutelin subunit-6, Rice glutelin-17	GLUTELIN 6		2	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060406			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
495	GLU7	Glu7t*(Glu7,GluA), GluA, Glu7t, Glu7, Glu18	GLUTELIN 7	Glutelin subunit7, Glutelin subunit 7, Glutelin subunit-7, Rice glutelin-18	GLUTELIN 7		2	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060407			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
496	GLU8	Glu8t*(GluE)	GLUTELIN 8	Glutelin subunit8	GLUTELIN 8		2		 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
497	GLU9	Glu9t*	GLUTELIN 9	Glutelin subunit9	GLUTELIN 9		2		 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
498	GOT3	Got3, Aat3	ASPARTATE AMINOTRANSFERASE 3	Aspartate aminotransferase3, Aspartate aminotransferase 3, Aspartate aminotransferase-3	ASPARTATE AMINOTRANSFERASE 3	Got3-1, Got3-2	2	Dimer. P(ST-C, PAGE).	 Biochemical character			GR:0060429			GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity		
499	GPD1	gpd1*, gpd1	GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 1	glyceraldehydephosphate dehydrogenase1, glyceraldehydephosphate dehydrogenase 1, glyceraldehyde-3-phosphate dehydrogenase-1	GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 1		2		 Biochemical character			GR:0060430			GO:0008943 - glyceraldehyde-3-phosphate dehydrogenase activity, GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity		
500	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy	PYRICULARIA ORYZAE RESISTANCE B	Pyricularia oryzae resistance-b, Magnaporthe grisea resistance-b, Blast resistance b			2	AB013448, AB013449. AB026839. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. Original line is Tohoku IL9 (Japonica).  EF642422-EF642443 (O. sativa, O. rufipogon, O. nivara).	 Tolerance and resistance - Disease resistance			GR:0060613		154.1	GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000508 - penetrated root length, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
501	PI14	Pi14(t), Pi14(t)*, Pi14	PYRICULARIA ORYZAE RESISTANCE 14	Pyricularia oryzae resistance 14, Magnaporthe grisea resistance-14, Blast resistance 14			2	One of the two resistant genes found in Maowangu.  Another one is Pi13(t). Resistant  to several races of Pyricularia grisea. [RGN13:17]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060643			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
502	PI16	Pi16(t), Pi16, Pi-16(t)	PYRICULARIA ORYZAE RESISTANCE 16	Pyricularia oryzae resistance 16, Magnaporthe grisea resistance-16, Blast resistance 16			2	One of the two resitant genes found in GA20.  Another one is Pi-k. Resistant  to several races of Pyricularia grisea. [RGN13:18]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is AUS373.	 Tolerance and resistance - Disease resistance			GR:0060645			GO:0009620 - response to fungus	TO:0000491 - fat and essential oil composition related trait, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
503	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb	STARCH BRANCHING ENZYME 3	starch branching enzyme3, starch branching enzyme 3, Starch branching enzyme III, Starch branching enzyme-3, starch branching enzyme IIb, branching enzyme-3, Q-enzyme IIa, starch Branching enzyme isoform Type B, Branching enzyme isoform Type B, BE isoform type B	STARCH BRANCHING ENZYME 3	sbe3-rs, be2b	2	LOC_Os02g32660. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. D16201, E08183. HQ712141, HQ712140, HQ712139, HQ712138, HQ712137, HQ712136, HQ712135, HQ712134. HQ679079-HQ679246 (O. sativa and other wild rice species).  JQ937272 (SBE3-rs; resistant starch mutant).	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os02g0528200	LOC_Os02g32660.2, LOC_Os02g32660.1	GR:0060839			GO:0009501 - amyloplast, GO:0005976 - polysaccharide metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005982 - starch metabolic process, GO:0019252 - starch biosynthetic process, GO:0003844 - 1,4-alpha-glucan branching enzyme activity, GO:0009568 - amyloplast starch grain	TO:0000097 - amylopectin content, TO:0000489 - carbohydrate composition related trait	PO:0009089 - endosperm 
504	Z11	z11	ZEBRA 11	zebra11, zebra 11, zebra-11			2	This mutant shows irregular yellow bands on leaf blades throughout the growth duration. The phenotype is very similar to that of z10. This mutant has yellowish white panicles. Mature grains have normal straw color. PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0061057		42.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000264 - lemma and palea color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
505	Z12	z12	ZEBRA 12	zebra12, zebra 12, zebra-12			2	This mutant shows irregular yellow bands on leaf blades until early tillering stage. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061058		41.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
506	SPL2	spl2(bl3), spl2, bl3	SPOTTED LEAF 2	spotted leaf2, spotted leaf 2, spotted leaf-2			2	Partial discoloration of leaves and stems appears from the seedling stage, but it is not so obvious in this stage and becomes more distinct in the tillering stage. Somewhat poor viabiity. [137] PO:0009047; stem ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Lesion mimic			GR:0060903			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf , PO:0009047 - stem 
507	GH2	gh2, CAD2, CAD, OsCAD2, GH2	GOLD HULL AND INTERNODE 2	gold hull and internode2, gold hull and internode-2, Cinnamyl alcohol dehydrogenase 2, Sinapyl alcohol dehydrogenase, Protein GOLD HULL AND INTERNODE 2, Cinnamyl alcohol dehydrogenase	CINNAMYL ALCOHOL DEHYDROGENASE 2	gh2, gh2-1	2	This mutant exhibits brownish green lemma and palea at panicle exsertion and deep golden yellow at maturity. This mutant also shows golden-colored internode (Yellow pigment is accumulated at cell wall). LOC_Os02g09490. Q6ZHS4. GRO:0007142; 1-4 leaf stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. GO:1901698: response to nitrogen compound. PO:0030123: panicle inflorescence.	 Biochemical character,  Vegetative organ - Culm,  Coloration - Others,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0187800	LOC_Os02g09490.1	GR:0060366		20.0	GO:0009642 - response to light intensity, GO:0009411 - response to UV, GO:0042742 - defense response to bacterium, GO:0055114 - oxidation reduction, GO:0009834 - secondary cell wall biogenesis, GO:0008270 - zinc ion binding, GO:0009055 - electron carrier activity, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0022900 - electron transport chain, GO:0020037 - heme binding, GO:0009809 - lignin biosynthetic process, GO:0009808 - lignin metabolic process	"TO:0000160 - UV light sensitivity, TO:0000733 - lignin biosynthesis trait, TO:0000051 - stem strength, TO:0000011 - nitrogen sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000732 - lignin monomer content, TO:0000426 - internode color, TO:0000190_TO:0000426 - \"seed coat color\" or \"internode color\", TO:0000460 - light intensity sensitivity, TO:0000264 - lemma and palea color"	PO:0009047 - stem , PO:0000036 - leaf vascular system , PO:0000039 - shoot axis vascular system , PO:0003011 - root vascular system , PO:0009005 - root , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0020142 - stem internode 
508	D30	d30(d W), dW, dwf26, d30	DWARF WAISEISHIRASASA	waiseishirasasa dwarf, dwarf-30			2	Dwarf. Slightly thick culm. Twisted flag leaf at the base of leaf blade with small and short round grains. PO:0009047; stem ; PO:0009025; leaf ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060209		62.0	GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000391 - seed size, TO:0000492 - leaf shape, TO:0000484 - seed shape, TO:0000473 - grain shattering, TO:0000576 - stem length, TO:0000207 - plant height, TO:0000339 - stem thickness	PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem 
509	RF2	Rf2 (Rfx), Rfx, Rf2	RESTORATION OF FERTILITY 2	Pollen fertility restoration2, Pollen fertility restoration 2, Pollen fertility restoration-2			2	PO:0009066; anther. fertility restorer gene for Lead Rice-type cytoplasmic male sterility. AB583698, AB583699, AB583700.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os02g0274000	LOC_Os02g17380.1	GR:0060741		65.0	GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
510	D32	d32(d K4,d12), d12, dwf28, dK4, d32	DWARF KYUSHU 4	dwarf Kyushu4, dwarf Kyushu 4, dwarf Kyushu-4, dwarf-32			2	Dwarf. Weakly spreading tillers with nearly normal grains. PO:0009047; stem ; PO:0009010; seed ; PO:0006343; axillary shoot. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060211		81.0	GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000427 - culm angle, TO:0000207 - plant height, TO:0000484 - seed shape	PO:0006343 - axillary shoot system , PO:0009010 - seed , PO:0009047 - stem 
511	GH3	gh3	GOLD HULL AND INTERNODE 3	gold hull and internode3, gold hull and internode 3, gold hull and internode-3			2	Make glume and internode gold at maturity. [132] PO:0020142; stem internode ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0060367		127.0		"TO:0000426 - internode color, TO:0000190_TO:0000426 - \"seed coat color\" or \"internode color\", TO:0000264 - lemma and palea color"	PO:0009010 - seed , PO:0020142 - stem internode 
512	D5	d5, dwf5	DWARF BUNKETSUWAITO TILLERING	bunketsuwaito tillering dwarf, dwarf-5			2	Dwarf. Profuse tillering with slender leaves.[10003] PO:0009047; stem ; PO:0006343; axillary shoot ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060188		137.0	GO:0007275 - multicellular organismal development	TO:0000370 - leaf width, TO:0000576 - stem length, TO:0000346 - tiller number, TO:0000207 - plant height	PO:0006343 - axillary shoot system , PO:0009025 - vascular leaf , PO:0009047 - stem 
513	CHL10	chl10	CHLORINA 10	chlorina10, chlorina 10, chlorina-10			2	This recessive mutant shows yellowish leaves throughout the growing period.  This was obtained by treating fertilized egg cell with N-methyl-N-nitrosourea (MNU). PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0060127		142.0	GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
514	BL1	bl1	BROWN LEAF SPOT 1	brown leaf spot1, brown leaf spot 1, brown leaf spot-1			2	Brown spots appear on leaves shortly after panicle emergence resembling fungus lesions. Then spread even into panicles.[298] PO:0009047; stem ; PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060082		163.0	GO:0015996 - chlorophyll catabolic process	TO:0000069 - variegated leaf, TO:0000221 - glume color, TO:0000326 - leaf color, TO:0000063 - mimic response, TO:0000056 - stem color	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009088 - seed coat 
515	BC3	bc3, bc-3, OsDRP2B, DRP2B	BRITTLE CULM 3	brittle culm3, brittle culm 3, brittle culm-3, dynamin-related protein 2B	DYNAMIN-RELATED PROTEIN 2B		2	A brittle or soft culm. Rather short height and imperfect emergence of panicles. The brittleness of culm and panicle axis of this mutant is not so distinct as that of bc1 and bc2. [132] PO:0009047; stem ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Vegetative organ - Culm	Os02g0738900	LOC_Os02g50550.1	GR:0060070		172.0	GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0009834 - secondary cell wall biogenesis, GO:0009808 - lignin metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0003924 - GTPase activity, GO:0031225 - anchored to membrane, GO:0009531 - secondary cell wall	TO:0000061 - node shattering, TO:0000207 - plant height, TO:0000051 - stem strength	PO:0009047 - stem , PO:0009049 - inflorescence 
516	TRI	tri	TRIANGULAR HULL	triangular hull			2	The spikelet appears triangular because its shape under the lemma. [296] PO:0009038; palea ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Grain shape			GR:0060965		185.0	GO:0007275 - multicellular organismal development	TO:0000484 - seed shape, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009037 - lemma , PO:0009038 - palea 
517	D29	d29(d K1), dwf25, dK1, d29	DWARF SHORT UPPERMOST INTERNODE	short uppermost internode dwarf, dwarf-29			2	Noticeable shortening of uppermost internodes results in the imperfect panicle emergence.  The shape and length of panicle is normal. PO:0009047; stem ; PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Vegetative organ - Culm			GR:0060208		197.0	GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000145 - internode length, TO:0000576 - stem length, TO:0000165 - panicle exsertion	PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020142 - stem internode 
518	ACS1	ACC1*, OsACS1, Os-ACS1, ACC1	ACC SYNTHASE 1	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1, 1-aminocyclopropane-1-carboxylate synthase 1, ACC synthase-1, S-adenosyl-L-methionine methylthioadenosine-lyase 1	ACC SYNTHASE 1		3	LOC_Os03g51740. EC=4.4.1.14 A2XLL2(indica). Q10DK7(japonica). M96672, M96673. KC609230-KC609242 (O. sativa and wild rice species, partial cds).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0727600	LOC_Os03g51740.1	GR:0060004			GO:0009733 - response to auxin stimulus, GO:0009058 - biosynthetic process, GO:0009693 - ethylene biosynthetic process, GO:0010446 - response to alkalinity, GO:0005737 - cytoplasm, GO:0046689 - response to mercury ion, GO:0030170 - pyridoxal phosphate binding, GO:0046687 - response to chromate, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0016769 - transferase activity, transferring nitrogenous groups, GO:0009835 - ripening, GO:0008483 - transaminase activity	TO:0000034 - chromium sensitivity, TO:0000163 - auxin sensitivity, TO:0000481 - alkali sensitivity	PO:0009005 - root 
519	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1	ACTIN 1	Actin1, Actin-1, Actin1*(act1), actin 1, Actin 11	ACTIN 1		3	A2XLF2(indica). Q10DV7(japonica). ACT11 in the journal article (Jain et.al. BBRC, 2006) might be ACT1. S44221 (promoter sequence). X63830. X16280. X15865. LOC_Os03g50885.	 Biochemical character	Os03g0718100	LOC_Os03g50885.1	GR:0060010			GO:0005515 - protein binding, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005856 - cytoskeleton, GO:0003774 - motor activity, GO:0015629 - actin cytoskeleton		
520	BL4	bl4	BROWN LEAF SPOT 4	brown leaf spot4, brown leaf spot 4, brown leaf spot-4			3	Relatively large brown spots appear on leaves. [499] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060085			GO:0015996 - chlorophyll catabolic process	TO:0000063 - mimic response, TO:0000069 - variegated leaf, TO:0000326 - leaf color	PO:0009025 - vascular leaf 
522	CDC	cdc*, cdc	CDC2A PROTEIN	CDC2a protein	CDC2A PROTEIN		3		 Biochemical character			GR:0060111			GO:0000279 - M phase, GO:0004693 - cyclin-dependent protein kinase activity		
523	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4	DWARF KAMIKAWABUNWAI TILLERING	kamikawabunwai tillering dwarf, dwarf-14, DWARF14, dwarf 14, Dwarf 88, HIGH-TILLERING DWARF 2, Primary panicle branch number 3, high-tillering dwarf 4		d14, d14-1, d88, htd4htd4	3	"similar to \"bunketsu-waito\". PO:0009047; stem ; PO:0006343; axillary shoot. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. Q10QA5. GQ406388. GO:1901601:strigolactone biosynthetic process. alpha/beta-fold hydrolase. PDB code: 4IH9. LOC_Os03g10620. a probable candidate SL receptor. GO:1902347: response to strigolactone."	 Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os03g0203200	LOC_Os03g10620.3, LOC_Os03g10620.2, LOC_Os03g10620.1	GR:0060196			GO:0007275 - multicellular organismal development, GO:0016787 - hydrolase activity, GO:0010223 - secondary shoot formation	TO:0000339 - stem thickness, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000152 - panicle number, TO:0000077 - shoot anatomy and morphology trait, TO:0000401 - plant growth hormone sensitivity, TO:0002639 - shoot branching, TO:0000576 - stem length	PO:0006343 - axillary shoot system , PO:0009047 - stem 
524	E3		HEADING DATE 3	Heading date3, Heading date 3, Heading date-3			3	HD6 is likely to be E3. PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060277			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000469 - days to maturity, TO:0000137 - days to heading	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
525	GA14	ga14	GAMETOPHYTE GENE 14	gametophyte gene14, gametophyte gene 14, gametophyte gene-14		ga14-i, ga14-j, ga14-n	3	Gamete abortion expressed as an allelic interaction such as ga14-i/ga14-j. Segregation distortion in the F2 lines from three way cross suggests that gamete carrying ga14-j is aborted.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060356			GO:0019953 - sexual reproduction		
526	GA2	ga2	GAMETOPHYTE GENE 2	gametophyete gene2, gametophyete gene 2, gametophyte gene-2		Ga-A, Ga-B, Ga-C, ga	3		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060344			GO:0019953 - sexual reproduction		
527	GA3	ga3	GAMETOPHYTE GENE 3	gametophyte gene3, gametophyte gene 3, gametophyte gene-3			3		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060345			GO:0019953 - sexual reproduction		
528	GRHA	Grha(t)*, Grha, Grh2	GREEN RICE LEAFHOPPER RESISTANCE A	Green rice leafhopper resistance A, Green rice leafhopper resistance-2			3	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060433			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
529	HD6	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha	HEADING DATE 6	Heading date (QTL)-6(t), Heading date-6, Heading date6, casein kinase II alpha subunit, CK2alpha subunit 1, Casein Kinase 2alpha	ALPHA SUBUNIT OF PROTEIN KINASE CK2		3	Under long day (13.5hr) treatment, this QTL  introduced from Kasalath to Nipponbare increased the days to heading. Hd6 has an epistatic effect with Hd2. This is homoeologous to wheat vernalization gene vrn-A1 on chromosome 5A. AB036785, AB036786, AB036787, AB036788. HD6 is likely to be E3. PO:0000230; inflorescence meristem ; PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. LOC_Os03g55389.	 Reproductive organ - Heading date	Os03g0762000	LOC_Os03g55389.1	GR:0060444			GO:0004674 - protein serine/threonine kinase activity, GO:0003700 - transcription factor activity, GO:0010229 - inflorescence development, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0004713 - protein tyrosine kinase activity, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0009648 - photoperiodism, GO:0005524 - ATP binding	TO:0000229 - photoperiod sensitivity, TO:0000469 - days to maturity, TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0000230 - inflorescence meristem , PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
530	L	L*	LETHAL FACTOR	Lethal factor			3		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0009566 - fertilization		
531	PHYA	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA	PHYTOCHROME A	PhytochromeA, Phytochrome A, Phytochrome-A	PHYTOCHROME A	phyA-2, phyA-4	3	A2XLG5 (indica). Q10DU0 (japonica). AB109891 (japonica). X14172. a rice ortholog of Arabidopsis gene for circadian clock component.	 Biochemical character	Os03g0719800	LOC_Os03g51030.3, LOC_Os03g51030.2, LOC_Os03g51030.1	GR:0060611			GO:0045449 - regulation of transcription, GO:0000155 - two-component sensor activity, GO:0005739 - mitochondrion, GO:0007623 - circadian rhythm, GO:0042803 - protein homodimerization activity, GO:0008020 - G-protein coupled photoreceptor activity, GO:0007600 - sensory perception, GO:0006350 - transcription, GO:0007165 - signal transduction, GO:0004871 - signal transducer activity, GO:0009585 - red, far-red light phototransduction, GO:0018106 - peptidyl-histidine phosphorylation, GO:0017006 - protein-tetrapyrrole linkage, GO:0018298 - protein-chromophore linkage, GO:0004673 - protein histidine kinase activity, GO:0016020 - membrane, GO:0007602 - phototransduction, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005524 - ATP binding		
532	PMS2	pms2*(Pms2,pgms,ms2P), Pms2, ms2-P, pms2*, ms74	PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 2	photoperiod sensitive genic male sterile2, photoperiod sensitive genic male sterile 2, photoperiod-sensitive male sterility-2, male sterile-74			3	Male sterile under long-day conditions and fertile under short-day conditions. pgms. PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060679			GO:0007275 - multicellular organismal development, GO:0009649 - entrainment of circadian clock	TO:0000009 - genic male sterility-photoperiod sensitive	PO:0009046 - flower , PO:0009066 - anther 
533	POXCA	Pox cA*, Pox6	PEROXIDASE CA	Peroxidase cA (cloned gene), Peroxidase-cA(cloned gene), Peroxidase-cA, Peroxidase-6	PEROXIDASE CA		3	Peroxidase-CA (cloned DNA) ( Kishimoto et al. 1994a)	 Biochemical character			GR:0060690			GO:0004601 - peroxidase activity		
534	RCH10	RCH10*, Cht13, Cht12, Rcht2	BASIC CHITINASE 10	Rice basic chitinase 10, Chitinase-13, Chitinase12, Basic endochitinase 2 precursor, Basic endochitinase 2, Chitinase 12, Pathogenesis related (PR)-3 chitinase 12, Chitinase-12, Class II chitinase homologues	BASIC CHITINASE 10		3	Rice basic chitinase, Rice basic chitinase (class I). EC=3.2.1.14 PR-3 chitinase, pathogenesis related 3 chitinase. P25765.	 Biochemical character	Os03g0418000	LOC_Os03g30470.1	GR:0060725			GO:0008061 - chitin binding, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process, GO:0051707 - response to other organism, GO:0004568 - chitinase activity, GO:0006040 - amino sugar metabolic process, GO:0016231 - beta-N-acetylglucosaminidase activity, GO:0008843 - endochitinase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0050832 - defense response to fungus		
535	RL5	rl5(rl3), rl5, rl3, cul12	ROLLED LEAF 5	rolled leaf5, rolled leaf 5, rolled leaf-5, curl leaf-12			3	Leaf width is nearly normal, but rolled inside. Pale green between veins, showing stripes on a leaf blade. PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060768			GO:0030154 - cell differentiation	TO:0000085 - leaf rolling, TO:0000370 - leaf width, TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
536	S E1	s e1	HYBRID STERILITY-E-1	hybrid sterility-e-1, hybrid sterility-e1			3	gametophytic F1 sterility. duplicate. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060804			GO:0000049 - tRNA binding, GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
537	SC	Sc*, Hst18	F1 POLLEN STERILITY C	F1 pollen sterility-c, Hybrid sterility-18			3	one-locus sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060794			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
538	SH4	sh4, sh4(t)*(sh3), sh3, sh4	SHATTERING 4	shattering4, shattering 4, shattering-4, SHATTERING		Sh4	3	PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0060876				TO:0000473 - grain shattering	PO:0009010 - seed 
539	SHP4	Shp4(Gb), Gb, Shp4	SHEATHED PANICLE 4	Sheathed panicle4, Sheathed panicle 4, Sheathed panicle-4			3	PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060888			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000165 - panicle exsertion, TO:0000145 - internode length, TO:0000089 - panicle type	PO:0009049 - inflorescence , PO:0020142 - stem internode 
540	SOD	sod*, sod	SUPEROXIDE DISMUTASE	superoxide dismutase	SUPEROXIDE DISMUTASE		3		 Biochemical character			GR:0060899			GO:0004784 - superoxide dismutase activity		
541	ST3	st3(stl), stl, st, st3	STRIPE 3	stripe3, stripe 3, stripe-3			3	PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060930			GO:0007275 - multicellular organismal development, GO:0015995 - chlorophyll biosynthetic process	TO:0000492 - leaf shape, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
542	V5	v5	VIRESCENT 5	virescent5, virescent 5, virescent-5			3	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060984			GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
543	V7	v7	VIRESCENT 7	virescent7, virescent 7, virescent-7			3	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060986			GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
544	Z9	z9	ZEBRA 9	zebra9, zebra 9, zebra-9			3	This mutant shows distinct yellow bands on leaf blades at 35-60 days after seeding. The bands disappear at later growth stages. The phenotype is very similar to that of z8. It is nonallelic to both z7 and z8. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0061055		189.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
545	D20	d20, dwf17	DWARF HAYAYUKI	hayayuki dwarf, dwarf-20			3	open tillers and sinuous culm and rachis. PO:0009047; stem ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Culm			GR:0060200			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem , PO:0009049 - inflorescence 
546	HG	Hg, Fg	HAIRY GLUME	Hairy glume			3	This gene conditions longer trichomes on the glumes, leaf margins, panicle branches and auricles.  The mutant trait is best expressed after flowering. [228],[299] PO:0020106; auricle ; PO:0009039; glume ; PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060446		29.0	GO:0007275 - multicellular organismal development	TO:0000417 - lemma and palea pubescence, TO:0000419 - leaf anatomy and morphology trait, TO:0000055 - leaf lamina pubescence	PO:0009025 - vascular leaf , PO:0009039 - glume , PO:0009088 - seed coat , PO:0020106 - leaf sheath auricle 
547	D52	d52(d K2), dK2, dwf33, d52	DWARF KYUSHU 2	dwarf Kyushu2, dwarf Kyushu 2, dwarf Kyushu-2, dwarf-52			3	"Dwarf originated from \"Kinmaze\" variety. Grain shape is nearly normal."	 Vegetative organ - Culm			GR:0060217		33.0	GO:0007275 - multicellular organismal development	TO:0000207 - plant height	
548	Z3	z3	ZEBRA 3	zebra3, zebra 3, zebra-3			3	PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061049		33.0	GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development	TO:0000339 - stem thickness, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf , PO:0009047 - stem 
549	DRP3	drp3	DRIPPING-WET LEAF 3	dripping-wet leaf3, dripping-wet leaf 3, dripping-wet leaf-3			3	Leaf surface appears wet. Water shedding area appears in tranversal patches on a leaf. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060243		33.0	GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
550	SPL3	spl3(bl4), spl3, bl4	SPOTTED LEAF 3	spotted leaf3, spotted leaf 3, spotted leaf-3			3	Relatively small reddish brown spots scattering over the whole surface of leaves. They appear from tillering stage to heading time.  The phenotypes of spl3, spl5 and spl7 are similar, being difficult to distinguish each other. [137] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060904		33.0	GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
551	DRP4	drp4	DRIPPING-WET LEAF 4	dripping-wet leaf4, dripping-wet leaf 4, dripping-wet leaf-4			3	Leaf surface appears wet. Water shedding area appears in longitudinal stripes. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060244		43.0	GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
554	D56	d56(d K7), dwf37, dK7, d56	DWARF KYUSHU 7	dwarf Kyushu7, dwarf Kyushu-7, dwarf Kyushu 7, dwarf-56			3	"Leaf shape is similar to \"daikoku dwarf\", but plant type is not elect as it is. Grain shape is almost round but not so small as \"daikoku dwarf\". PO:0009047; stem."	 Vegetative organ - Culm			GR:0060221		57.0	GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000135 - leaf length, TO:0000576 - stem length	PO:0009047 - stem 
555	ST6	st6(t), st6	STRIPE 6	stripe6, stripe 6, stripe-6			3	This mutant exhibits fine yellow stripes on leaf blade and sheath through growing period and these stripes are also expressed on glumes. PO:0020104; leaf sheath ; PO:0009037; lemma ; PO:0009038; palea ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060933		66.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000264 - lemma and palea color, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf , PO:0009037 - lemma , PO:0009038 - palea , PO:0020104 - leaf sheath 
556	AL10	al10	ALBINO 10	albino10, albino 10, albino-10			3	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060029		73.0	GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
557	AN3	An3	AWN 3	Awn3, Awn 3, Awn-3			3	Triplicate gene. PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060050		76.0	GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
559	CHL2	chl2	CHLORINA 2	chlorina2, chlorina 2, chlorina-2			3	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060119		77.0	GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000496 - carotenoid content, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
560	LKF	Lk f, Lkf	LONG KERNEL FUSAYOSHI	'Fusayoshi' long grain			3	incomplete dominance. This gene increases the length of grain to 1.3-1.4 times of the normal, the weight to 1.4-1.5 times. Almost no effect on the width and the thickness of grain. PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060505		87.0	GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000181 - seed weight	PO:0009010 - seed 
561	MS7	ms7	MALE STERILE 7	male sterile7, male sterile 7, male sterile-7			3	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060544		108.0	GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
562	BC1	bc1, bc-1, OsBC1, CWA1, FP1	BRITTLE CULM 1	brittle culm1, BRITTLE CULM1, brittle culm-1, COBRA-like protein 5, Protein BRITTLE CULM1, Cell Wall Architecture 1, fragile plant 1	COBRA-LIKE PROTEIN 5	bc1-2, bc1-1, cwa1, fp1, bc1-101	3	Culms and leaves are brittle and easy to be broken by bending. Os03g0416200. LOC_Os03g30250. D47139, AY328909, AY328910. A2XHZ9(indica). Q10JL1(japonica). PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0000077; sclerenchyma cell ; PO:0009049; inflorescence ; PO:0009015; vascular tissue ; PO:0020039; leaf lamina ; PO:0009005; root ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Culm	Os03g0416200	LOC_Os03g30250.1	GR:0060068		108.0	GO:0009834 - secondary cell wall biogenesis, GO:0005886 - plasma membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009808 - lignin metabolic process, GO:0031225 - anchored to membrane, GO:0009531 - secondary cell wall	TO:0000061 - node shattering, TO:0000108 - leaf shattering, TO:0000051 - stem strength	PO:0000077 - sclerenchyma cell , PO:0009005 - root , PO:0009015 - portion of vascular tissue , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020039 - leaf lamina , PO:0020104 - leaf sheath 
564	MI	Mii, Mi1	MINUTE GRAIN	Minute grain, Minute grain-1			3	This gene reduces the length of grain to 70-80% and the weight to 60-70% of that of normal but almost no effect on the width and thickness.  Due to the extreme imbalance between the shortening in glume and ovary, the notch in grain is frequently found. N PO:0009049; inflorescence ; PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060525		128.0	GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000181 - seed weight, TO:0000089 - panicle type	PO:0009010 - seed , PO:0009049 - inflorescence 
565	FC1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1	FINE CULM 1	fine culm1, fine culm 1, fine culm-1, lateral branching-1(t), teosinte-branching 1, Fine culm 1, teosinte branched1 protein, teosinte branched 1 protein, transcription factor OsTB1, teosinte branched1, FINE CULM1	TEOSINTE BRANCHED1 PROTEIN 	fc1, fc1-1, fc1-2	3	Many tillers with fine culm and normal height. [132]  This gene controls lateral branching of shoot system. OsTB1 is a countrpart of maize TB1 (TEOSINTE BRANCHED 1), being located on chromosome 3 closely linked with RFLP marker C944. Negatively regulate the lateral branching. transcription factor TCP family. a negative regulator of tiller bud outgrowth. AB088343.  AF322143, AY043215, AY286002. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage. LOC_Os03g49880. GO:1901698: response to nitrogen compound.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os03g0706500 	LOC_Os03g49880.1	GR:0060322,GR:0080012		146.0	GO:0009735 - response to cytokinin stimulus, GO:0005634 - nucleus, GO:0009725 - response to hormone stimulus, GO:0007049 - cell cycle, GO:0007275 - multicellular organismal development, GO:0048831 - regulation of shoot development, GO:0009733 - response to auxin stimulus, GO:0030528 - transcription regulator activity	TO:0000401 - plant growth hormone sensitivity, TO:0002639 - shoot branching, TO:0000163 - auxin sensitivity, TO:0000027 - culm number, TO:0000339 - stem thickness, TO:0000346 - tiller number, TO:0000167 - cytokinin sensitivity, TO:0000152 - panicle number, TO:0000661 - tiller bud dormancy, TO:0000011 - nitrogen sensitivity	PO:0009047 - stem , PO:0020148 - shoot apical meristem , PO:0007041 - inflorescence emergence stage , PO:0004709 - axillary bud , PO:0006343 - axillary shoot system 
566	CHL3	chl3	CHLORINA 3	chlorina3, chlorina 3, chlorina-3			3	PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060120		168.0	GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
567	PGI1	Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a	PHOSPHOGLUCOISOMERASE 1	Phosphoglucoisomerase1, Phosphoglucoisomerase 1, Phosphoglucoisomerase-1, Glucose-6-phosphate isomerase, cytosolic A, Phosphoglucose isomerase A, Phosphohexose isomerase A	PHOSPHOGLUCOISOMERASE 1	Pgi1-0, Pgi1-1, Pgi1-2, Pgi1-3	3	Dimer. P(ST-H, PAGE-TC), L&C(ST-H). Interlocus hybrid bands occur. Differential allele frequencies between Indica and Japonica types. Thermomorphs are known. EC=5.3.1.9 P42862. D10411. D15816. D45217.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0776000	LOC_Os03g56460.3, LOC_Os03g56460.2, LOC_Os03g56460.1	GR:0060602		176.0	GO:0004347 - glucose-6-phosphate isomerase activity, GO:0006094 - gluconeogenesis, GO:0005829 - cytosol, GO:0006096 - glycolysis		
568	NAL6	Nal6, Cul6	NARROW LEAF 6	Narrow leaf6, Narrow leaf 6, Narrow leaf-6, Curl leaf-6			3	Dominant narrow leaf. Induced by MNU treatment on the variety 'Kinmaze'. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Leaf			GR:0060570		184.0	GO:0007275 - multicellular organismal development	TO:0000492 - leaf shape, TO:0000370 - leaf width	PO:0009025 - vascular leaf 
569	GDH1	Gdh1	GLUTAMATE DEHYDROGENASE 1	Glutamate dehydrogenase1, Glutamate dehydrogenase 1, Glutamate dehydrogenase-1	GLUTAMATE DEHYDROGENASE 1	Gdh1-1, Gdh1-2	3	Hexamer. Homozygous genotypes are shown as one tight band, and heterozygous genotype as a broad band, respectively (trimeric form). Expressed in young root, plumule and slightly in mature leaf.	 Biochemical character			GR:0060361		184.0	GO:0004352 - glutamate dehydrogenase activity		
570	CHL1	chl1, chl1(ch1), ch1	CHLORINA 1	chlorina1, chlorina 1, chlorina-1			3	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060118		188.0	GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000299 - leaf lamina color, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
571	AL5	al5, alK5	ALBINO 5	albino5, albino 5, albino-5			4	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060024			GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
572	AL7	al7(t), alK7, al7	ALBINO 7	albino7, albino 7, albino-7			4	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060026			GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
573	AN1	An1	AWN 1	Awn1, Awn 1, Awn-1			4	Triplicate gene. PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060048			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
574	AUL	aul	AURICLELESS	auricleless			4	This mutant lacks auricles, and the ligule is rudimentary.[228] PO:0020106; auricle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Leaf			GR:0060065			GO:0007275 - multicellular organismal development	TO:0000226 - auricleless, TO:0000335 - ligule shape, TO:0000024 - ligule length	PO:0020106 - leaf sheath auricle 
576	BPH2	bph2	BROWN PLANTHOPPER RESISTANCE 2	brown planthopper resistance 2, brown planthopper resistance-2			12	bph2 is resistant to brown plant hopper, being located on the short arm of chromosome 12 flanked by markers Kam3 and Kam4. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060090			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
577	DRP1	drp1	DRIPPING-WET LEAF 1	dripping-wet leaf1, dripping-wet leaf 1, dripping-wet leaf-1			4	Leaves appear wet due to the failure of wax layer formation on the leaf surface. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060241			GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
578	DRP8	drp8	DRIPPING-WET LEAF 8	dripping-wet leaf8, dripping-wet leaf 8, dripping-wet leaf-8			4	Leaf surface appears wet. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060248			GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
579	FLO	flo(t)*, flo3	FLOURY ENDOSPERM	floury endosperm, floury endosperm 3, floury endosperm-3			4	low allergenic protein. pleiotropy or tight linkage. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060332			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000104 - floury endosperm, TO:0000266 - chalky endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
580	GA10	ga10(t), ga10	GAMETOPHYTE GENE 10	gametophyte gene10, gametophyte gene 10, gametophyte gene-10			4		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060352			GO:0019953 - sexual reproduction		
581	GA12	ga12	GAMETOPHYTE GENE 12	gametophyte gene12, gametophyte gene 12, gametophyte gene-12			4	Distorted segregation due to selective fertilization caused by ga12.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060354			GO:0019953 - sexual reproduction		
582	GLH	Glh(t)*, Glh, Glh14	GREEN LEAFHOPPER RESISTANCE	Green leafhopper resistance, Green leafhopper resistance-14			4	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060389			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
583	GLUP3	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3	GLUTELIN PRECURSOR 3	glutelin precursor3, glutelin precursor 3, glutelin precursor-3, vacuolar processing enzyme 1, legumain 3	CYSTEIN PROTEASE	Osvpe1	4	PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. The vacuolar processing enzyme OsVPE1 is required for efficient glutelin processing in rice. AB109637. BAC76418. BAF15342. a seed-related legumain.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os04g0537900	LOC_Os04g45470.1	GR:0060413			GO:0000327 - lytic vacuole within protein storage vacuole, GO:0045735 - nutrient reservoir activity, GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity	TO:0000109 - endosperm storage protein-2 content, TO:0000615 - abscisic acid sensitivity, TO:0000490 - protein composition related trait, TO:0000164 - stress trait, TO:0000429 - salt sensitivity	PO:0009089 - endosperm 
584	GM2	Gm2, Gm-2, GM-2	GALL MIDGE RESISTANCE 2	Gall midge resistance2, Gall midge resistance 2, Gall midge resistance-2			4	Resistant to biotype 1 and 2 of gall midge. PO:0009011; plant structure ; PO:0000003; whole plant. Gm2 is mapped within 0.66 Mb region on chromosome 4 between the SSR markers RM17473 and RM17503 (Yasala et al. 2012).	 Tolerance and resistance - Insect resistance			GR:0060418			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
585	GPD2	gpd2*, gpd2	GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 2	glyceraldehydephosphate dehydrogenase2, glyceraldehydephosphate dehydrogenase 2, glyceraldehyde-3-phosphate dehydrogenase-2	GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 2		4		 Biochemical character			GR:0060431			GO:0008943 - glyceraldehyde-3-phosphate dehydrogenase activity, GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity		
586	HPG1*	hpg1*, hpg1	HIGH PREPROGLUTELIN1	high preproglutelin1, high preproglutelin 1, high preproglutelin-1			4	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060449			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
587	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4	NARROW LEAF 1	narrow leaf1, narrow leaf 1, narrow leaf-1, curl leaf-1, Green for photosysthesis, SPIKELET NUMBER		SPIKE, LSCHL4, NAL1- japonica, NAL1-indica, NAL1-Takanari	4	duplicate or triplicate. Some narrow leaf strain is controlled by triplicate genes, nal1, nal2 and nal3. EU093963. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage. TO:0000820: leaf vein anatomy and morphology trait. TO:0000832: flag leaf anatomy and morphology trait. LOC_Os04g52479.	 Vegetative organ - Leaf,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0615000	LOC_Os04g52479.3, LOC_Os04g52479.2, LOC_Os04g52479.1	GR:0060565			GO:0003824 - catalytic activity, GO:0008152 - metabolic process, GO:0009651 - response to salt stress, GO:0007275 - multicellular organismal development	TO:0006032 - panicle size, TO:0000495 - chlorophyll content, TO:0000262 - panicle shape, TO:0000492 - leaf shape, TO:0000396 - grain yield, TO:0000089 - panicle type, TO:0000370 - leaf width, TO:0000152 - panicle number, TO:0000456 - spikelet number, TO:0006001 - salt tolerance	PO:0009025 - vascular leaf , PO:0020103 - flag leaf 
588	NAL5	nal5(nal1), nal5, nal1, cul5	NARROW LEAF 5	narrow leaf5, narrow leaf 5, narrow leaf-5, curl leaf-5			4	Semi-dwarf with narrow and dark green leaves. [132] PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060569			GO:0007275 - multicellular organismal development, GO:0015995 - chlorophyll biosynthetic process, GO:0009826 - unidimensional cell growth	TO:0000492 - leaf shape, TO:0000299 - leaf lamina color, TO:0000370 - leaf width, TO:0000576 - stem length, TO:0000207 - plant height	PO:0009025 - vascular leaf , PO:0009047 - stem 
589	OCP	ocp*, ocp	ORYZAIN ALPHA CHAIN	oryzain alpha chain, Oryzain alpha chain precursor, oryzain alpha, Oryzain alpha-A	ORYZAIN ALPHA CHAIN		4	EC=3.4.22.- D90406. P25776. DQ222400. D16051.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0650000	LOC_Os04g55650.2, LOC_Os04g55650.1	GR:0060580			GO:0009845 - seed germination, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0004623 - phospholipase A2 activity, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0006508 - proteolysis, GO:0010039 - response to iron ion, GO:0009411 - response to UV, GO:0004197 - cysteine-type endopeptidase activity	TO:0000074 - blast disease, TO:0000160 - UV light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000224 - iron sensitivity	PO:0007057 - 0 seed germination stage 
590	PIN1	Pin1	PURPLE INTERNODE 1	Purple internode1, Purple internode 1, Purple internode-1			4	Make internode, leaf sheath, auricle and a part of leaf collar purpple. PO:0020104; leaf sheath ; PO:0020141; stem node ; PO:0020106; auricle ; PO:0020142; stem internode ; PO:0006012; leaf collar. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060666			GO:0009812 - flavonoid metabolic process	TO:0000364 - leaf collar color, TO:0000059 - node color, TO:0000426 - internode color, TO:0000367 - basal leaf sheath color, TO:0000294 - auricle color	PO:0006012 - leaf collar , PO:0020104 - leaf sheath , PO:0020106 - leaf sheath auricle , PO:0020141 - stem node , PO:0020142 - stem internode 
591	PL2	pl2(t), pl2	PURPLE LEAF 2	purple leaf2, purple leaf 2, purple leaf-2			4	All plant parts, except the lemma and palea, are purple. Leaf blades and leaf sheaths are fully purple from seedling to maturity.  Recessive gene. [399] PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060672			GO:0009812 - flavonoid metabolic process	TO:0000056 - stem color, TO:0000071 - anthocyanin content, TO:0000264 - lemma and palea color, TO:0000326 - leaf color, TO:0000299 - leaf lamina color, TO:0000367 - basal leaf sheath color	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
592	R45S4	R45s4*, R45s4	45S RIBOSOMAL DNA 4	45s ribosomal DNA4, 45s ribosomal DNA 4, 45S ribosomal DNA-4			4		 Biochemical character			GR:0060718			GO:0005840 - ribosome, GO:0000182 - rDNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
593	RK1	rk1	ROUND KERNEL 1	round kernel1, round kernel-1			4	Shorter and wider kernels compared with normal ones, showing the length-width ratio being 1.4. [131] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060761				TO:0000149 - seed width, TO:0000287 - brown rice shape, TO:0000391 - seed size	PO:0009010 - seed 
594	RL2	rl2, cul9	ROLLED LEAF 2	rolled leaf2, rolled leaf 2, rolled leaf-2, curl leaf-9			4	Leaf blade is rolled cylindrically. [282] PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060765			GO:0030154 - cell differentiation	TO:0000085 - leaf rolling, TO:0000492 - leaf shape, TO:0000370 - leaf width	PO:0009025 - vascular leaf 
595	SC2	s c2	HYBRID STERILITY-C-2	hybrid sterility-c-2, hybrid sterility-c2			4	PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060801			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0009046 - flower 
596	S E2	s e2	HYBRID STERILITY-E-2	hybrid sterility-e-2, hybrid sterility-e2			4	PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060805			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
597	SHO1	sho1, DCL4, OsDCL4, Os DCL4, Dcl4	SHOOT ORGANIZATION 1	shoot organization 1, shoot organization-1, shoot organization1, Endoribonuclease Dicer homolog 4, Dicer-like protein 4, Protein SHOOT ORGANIZATION 1, Oryza sativa dicer-like4, Oryza sativa dicer-like 4, Dicer like 4	DICER-LIKE PROTEIN 4	sho1-1, sho1-2, sho1-3, sho1-4, sho1-5, sho1-6, sho1-7, sho1-8, Osdcl4-1	4	Dicer-like protein, DICER. EC=3.1.26.-A7LFZ6. PO:0009009; embryo ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. an Ortholog of Arabidopsis DCL4. AB353922. EU009924. LOC_Os04g43050. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Vegetative organ - Shoot apical meristem(SAM),  Seed - Morphological traits - Embryo,  Tolerance and resistance - Disease resistance	Os04g0509300	LOC_Os04g43050.4, LOC_Os04g43050.1	GR:0060883,GR:0101252			GO:0050832 - defense response to fungus, GO:0030145 - manganese ion binding, GO:0009887 - organ morphogenesis, GO:0010267 - production of ta-siRNAs involved in RNA interference, GO:0010492 - maintenance of shoot apical meristem identity, GO:0009888 - tissue development, GO:0009944 - polarity specification of adaxial/abaxial axis, GO:0008026 - ATP-dependent helicase activity, GO:0048608 - reproductive structure development, GO:0005524 - ATP binding, GO:0004525 - ribonuclease III activity, GO:0003725 - double-stranded RNA binding, GO:0000287 - magnesium ion binding, GO:0005634 - nucleus, GO:0004252 - serine-type endopeptidase activity, GO:0007275 - multicellular organismal development	TO:0000064 - embryo related trait, TO:0000074 - blast disease, TO:0000492 - leaf shape	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
598	SHP5	shp5(t), shp5	SHEATHED PANICLE 5	sheathed panicle5, sheathed panicle 5, sheathed panicle-5			4	Panicle does not exsert.  Reduced number of tillers, round shape of spikelet and hairy glumes are accompanied with sheathed panicle. [RGN10:7] PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060889			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000145 - internode length, TO:0000165 - panicle exsertion, TO:0000089 - panicle type	PO:0009049 - inflorescence , PO:0020142 - stem internode 
599	SPR1	spr1	SPREADING PANICLE 1	spreading panicle1, spreading panicle-1			4	Primary panicle branches extend obliquely outward so that the panicles appear spreading. PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060913			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
600	SSK	ssk(sk), sk, ssk	SPIKELET SEMI-STERILE	malformed semisterile			4	PO:0009038; palea ; PO:0009062; gynoecium ; PO:0009037; lemma.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060926			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000358 - female sterility	PO:0009037 - lemma , PO:0009038 - palea , PO:0009062 - gynoecium 
601	ST7	st7	STRIPE 7	stripe7, stripe 7, stripe-7			4	This recessive mutant shows white stripes on leaves at germination.The stripes become more prominent at tillering stage and persist up to maturity. PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0060934			GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
602	TSV1	tsv1(RTSV), RTSV, tsv1	RICE TUNGRO SPHERICAL VIRUS RESISTANCE 1	rice tungro spherical virus resistance1, rice tungro spherical virus resistance 1, rice tungro spherical virus resistance-1			4	Resistance to rice tungro spherical virus.	 Tolerance and resistance - Disease resistance			GR:0060970			GO:0009615 - response to virus	TO:0000413 - rice tungro virus resistance	
603	WH	Wh, Hw	WHITE HULL	White hull			4	Hull color is dull chalky white. PO:0009038; palea ; PO:0009088; seed coat ; PO:0009037; lemma. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0061001			GO:0043473 - pigmentation	TO:0000190 - seed coat color, TO:0000264 - lemma and palea color	PO:0009037 - lemma , PO:0009038 - palea , PO:0009088 - seed coat 
604	XA14	Xa14	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 14	Xanthomonas oryzae pv. oryzae resistance 14, Xanthomonas campestris pv. oryzae resistance-14, Xanthomonas oryzae pv. oryzae resistance-14			4	Resistant to Philippine  race 5, but susceptible to races 1, 2, 3, 4, and 6. [RGN5:5]	 Tolerance and resistance - Disease resistance			GR:0061022			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
605	YLM	ylm	YELLOW LEAF MARGIN	yellow leaf margin			4	Yellowish leaf margin manifested at the heading stage. [132] PO:0009025; leaf. GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0061044			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
606	Z5	z5	ZEBRA 5	zebra5, zebra 5, zebra-5			4	A heavy chlorosis occurs at the seeding stage and turns to the zebra bands around the fourth leaf stage. Though the green color recovers at the progressing stage, spikelets and anthers turn to whitish in the heading stage [184] PO:0006318; floret (sensu Poaceae) ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0061051			GO:0015995 - chlorophyll biosynthetic process	TO:0000264 - lemma and palea color, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009082 - spikelet floret , PO:0009025 - vascular leaf 
607	LKI1	lk i1, lki1, lk-i-1	LONG KERNEL IRAT13 1	IRAT 13' long grain1, IRAT 13' long grain 1, 'IRAT 13' long grain-1			4	duplicate. Longer grain than that of Fusayoshi (Lk-f) and expressed as a recessive character. [RGN4:3]. The homozygote for lk-i-1 shows a grain length increase of more than 20% over that of Fusayoshi. [253] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060506			GO:0007275 - multicellular organismal development	TO:0000146 - seed length	PO:0009010 - seed 
608	D11	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4	DWARF SHINKANEAIKOKU OR NOHRIN 28	shinkaneaikoku or nohrin 28 dwarf, DWARF SHINKANEAIKOKU OR NOHRIN 28, OsDWARF11, dwarf-11, Cytochrome P450 724B1, Dwarf protein 11, cytochrome P450 CYP724B1, DWARF11, grain number and size on chromosome 4, Panicle Morphology Mutant 1, Notched Belly Grain 4	CYTOCHROME P450 724B1	m107, d11-1, d11-2, gns4, pmm1, pmm1-1, pmm1-2, pmm1-3, nbg4	4	LOC_Os04g39430. Q6F4F5. AB158759. Slightly dwarf.  Small and round grain.  Sparse grain setting on a panicle. EC=1.14.-.- GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.TO 0000847: panicle inflorescence morphology trait. TO:0000845: collective phyllome structure morphology trait. TO:0000847: panicle inflorescence morphology trait.  TO:0000970: panicle density.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Inflorescence,  Seed - Morphological traits,  Seed - Physiological traits - Taste,  Character as QTL - Yield and productivity	Os04g0469800	LOC_Os04g39430.2, LOC_Os04g39430.1	GR:0060193		10.0	GO:0010029 - regulation of seed germination, GO:0016020 - membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016132 - brassinosteroid biosynthetic process, GO:0006879 - cellular iron ion homeostasis, GO:0007275 - multicellular organismal development, GO:0008199 - ferric iron binding, GO:0009647 - skotomorphogenesis, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0006826 - iron ion transport, GO:0055114 - oxidation reduction, GO:0009741 - response to brassinosteroid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0022900 - electron transport chain, GO:0051512 - positive regulation of unidimensional cell growth	TO:0000040 - panicle length, TO:0000391 - seed size, TO:0000145 - internode length, TO:0000484 - seed shape, TO:0000207 - plant height, TO:0000576 - stem length, TO:0000397 - grain size, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000139 - grains per panicle, TO:0002759 - grain number, TO:0000371 - yield trait, TO:0006032 - panicle size, TO:0000396 - grain yield, TO:0000592 - 1000-dehulled grain weight, TO:0000206 - leaf angle, TO:0000547 - primary branch number, TO:0000052 - primary branching of inflorescence, TO:0002730 - grain shape	PO:0006321 - primary inflorescence branch , PO:0009010 - seed , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020122 - inflorescence axis , PO:0020142 - stem internode 
609	DRP5	drp5	DRIPPING-WET LEAF 5	dripping-wet leaf5, dripping-wet leaf 5, dripping-wet leaf-5			4	Leaf surface appears wet. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060245		10.0	GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
610	RCN2	rcn2	REDUCED CULM NUMBER 2	reduced culm number2, reduced culm number 2, reduced culm number-2			4	Few tillers in both low and high temperature conditions. [RGN4:4]. Panicle number is usually reduced to 50% of that of the original variety, Shiokari,  and plant height is slightly reduced.  The character shows no respone to temperature. [256] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060727		14.0	GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000152 - panicle number	PO:0009047 - stem 
611	MLS3	mls3	MALFORMED LEMMA 3	malformed spikelet3 (lemma3 ?), malformed spikelet 3, malformed spikelet-3			4	Abnormality of lemma and palea caused by low temperature. PO:0009051; spikelet ; PO:0000003; whole plant ; PO:0009037; lemma ; PO:0009038; palea.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn			GR:0060529		28.0	GO:0007275 - multicellular organismal development	TO:0000436 - spikelet sterility, TO:0000432 - temperature response trait, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0000003 - whole plant , PO:0009037 - lemma , PO:0009038 - palea , PO:0009051 - spikelet 
612	P	P(Pa,Pb,Pc), A, Pa	COLORED APICULUS	Colored apiculus		P-K, P-C	4	Activates C and A at apiculus. As a result, anthocyanin pigmentation occurs at apiculus. PO:0006033; paleal apiculus. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060592		37.0	GO:0009812 - flavonoid metabolic process	TO:0000140 - apiculus color	PO:0006033 - paleal apiculus 
613	PS2	Ps2(Ps1), Ps1, Ps2	PURPLE STIGMA 2	Purple stigma2, Purple stigma 2, Purple stigma-2			4	Make stigma purple. PO:0006497; stigma epidermis (sensu Poaceae). GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060704		46.0	GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0006061 - stigma epidermis 
614	PR	Pr(Rp), Rp, Pr	PURPLE HULL	Purple hull			4	Responsible for distributing color over the entire surface of floral glumes, ie. lemma and palea, and in some cases the rachilla. [298] PO:0009038; palea ; PO:0009088; seed coat ; PO:0009037; lemma. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060691		50.0	GO:0009812 - flavonoid metabolic process	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color	PO:0009037 - lemma , PO:0009038 - palea , PO:0009088 - seed coat 
615	D31	d31, dwf27	DWARF TAICHUNG 155 IRRADIATED	taichung 155 irradiated dwarf, taichung-155-irradiated dwarf, dwarf-31			4	Plant height is about 70 cm with narrow and dark green leaves. PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060210		56.0	GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth, GO:0015995 - chlorophyll biosynthetic process	TO:0000576 - stem length, TO:0000299 - leaf lamina color, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000370 - leaf width	PO:0009025 - vascular leaf , PO:0009047 - stem 
616	NAL4	nal4(nal), nal4, nal, cul4	NARROW LEAF 4	narrow leaf4, narrow leaf 4, narrow leaf-4, curl leaf-4			4	PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Leaf			GR:0060568		63.0	GO:0007275 - multicellular organismal development	TO:0000370 - leaf width, TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
617	XA2	Xa2	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 2	Xanthomonas oryzae pv. oryzae resistance 2, Xanthomonas campestris pv. oryzae resistance-2, Xanthomonas oryzae pv. oryzae resistance-2			4	Resistant to the Japanese Isolate Group II.	 Tolerance and resistance - Disease resistance			GR:0061012		64.0	GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
618	XA12	Xa12(Xa kg), Xakg, Xa12	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 12	Xanthomonas oryzae pv. oryzae resistance 12, Xanthomonas campestris pv. oryzae resistance-12, Xanthomonas oryzae pv. oryzae resistance-12		Xa12-h (Xa kg-h)	4		 Tolerance and resistance - Disease resistance			GR:0061020		66.0	GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
619	XA1	Xa1(Xe), Xe, Xa1, Xa-1	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 1	Xanthomonas oryzae pv. oryzae resistance 1, Xanthomonas campestris pv. oryzae resistance-1, Xanthomonas oryzae pv. oryzae resistance-1		Xa1-h.	4	LOC_Os04g53120. Resistant to the Japanese Isolate Group I. [368]. AB002266. PO:0009025; leaf. Xa1 is a member of the NBS-LRR class of plant diseaseresistance genes (Yoshimura et al. 1998). Os04g0622600 (in Rap3 (build5)).	 Tolerance and resistance - Disease resistance			GR:0061011		68.0	GO:0006915 - apoptosis, GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0003677 - DNA binding	TO:0000175 - bacterial blight disease resistance	PO:0009025 - vascular leaf 
620	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1	BLACK HULL C	Phenol staining, polyphenol oxidase, PPO enzyme, BLACK HULL1	POLYPHENOL OXIDASE	phr1	4	Color of glume and caryopsis becomes dark brown with 1% Phenol solution.  Black ripening color of floral glumes. Complementary action of three genes, Bha, Bhb, and Bhc. PO:0009088; seed coat ; PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.MH63 (DQ532375), Nipponbare (DQ532376), CJ06 (DQ532377), Jl506 (DQ532378), Jnxn (DQ532379), Qfn (DQ532380), R4 (DQ532381), Saon (DQ532382), Sun (DQ532383), Tx3 (DQ532384), Tx36 (DQ532385), Tzn (DQ532386), w11 (DQ532387), Zh11(DQ532388), Zhen5125 (DQ532389), dl (DQ532390), 93-11 (DQ532391), GLA (DQ532392), k2406d (DQ532393), k2406f (DQ532394), Tx7 (DQ532395), Tx9 (DQ532396), A3 (DQ532397), A8 (DQ532398), G01037 (DQ532399), G01049 (DQ532400), G01054 (DQ532401), G01060 (DQ532402), G01067 (DQ532403), G01084 (DQ532404), G02016 (DQ532405), G02068 (DQ532406), G02104 (DQ532407), G02115 (DQ532408), G02177 (DQ532409), G12 (DQ532410), G25 (DQ532411), G30 (DQ532412), G40 (DQ532413), G52030 (DQ532414), G7113 (DQ532415), G7134 (DQ532416), G7232 (DQ532417), G7251 (DQ532418), G9014 (DQ532419), w0009 (DQ532420), w0154d (DQ532421), w0154f (DQ532422), w0509 (DQ532423), w0634d (DQ532424), w0634f (DQ532425), w1 (DQ532426), w1125 (DQ532427), w1727 (DQ532428), w1862 (DQ532429), w6 (DQ532430), yaoyong (DQ532431), and G7 (DQ532432). LOC_Os04g53300.	 Coloration - Others	Os04g0624500	LOC_Os04g53300.1	GR:0060081		74.0	GO:0016051 - carbohydrate biosynthetic process, GO:0043473 - pigmentation	TO:0000706 - hull color, TO:0000264 - lemma and palea color, TO:0000190 - seed coat color, TO:0000062 - phenol reaction	PO:0009088 - seed coat , PO:0009089 - endosperm 
621	SH3	Sh3	SHATTERING 3	Shattering3, Shattering 3, Shattering-3		Sh3	4	Seed shed when matured similarly as a wild rice. PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0060875		80.0		TO:0000473 - grain shattering	PO:0009010 - seed 
622	SPR3	Spr3(t), Spr3	SPREADING PANICLE 3	Spreading panicle3, Spreading panicle-3			4	Primary branches spread after flowering. [RGN7:18] PO:0009049; inflorescence. Spr3 may serve as a gene encoding microRNA, controlling rice inflorescence development. (Luo et al. 2008)  EU365774 (Oryza glaberrima cultivar CG14). Ishii et al. localized the SPR3 locus to a 9.3-kb genomic region, and their complementation tests suggest that this region regulates the liguleless gene (OsLG1).	 Reproductive organ - Inflorescence,  Character as QTL - Yield and productivity			GR:0060915		82.0	GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
623	D42	d42, dwf31	DWARF LIGULELESS	liguleless dwarf, dwarf-42			4	Liguleless and plant height is about 25 cm with narrow and dark green leaves. PO:0020105; ligule ; PO:0009047; stem ; PO:0009010; seed ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060214		85.0	GO:0007275 - multicellular organismal development	TO:0000024 - ligule length, TO:0000299 - leaf lamina color, TO:0000235 - liguleless, TO:0000370 - leaf width, TO:0000207 - plant height, TO:0000576 - stem length, TO:0000391 - seed size	PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0020105 - ligule 
624	PIKUR1	Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1	PYRICULARIA ORYZAE RESISTANCE-KUR-1	Pyricularia oryzae resistance-kur-1, Magnaporthe grisea resistance-kur1, Blast resistance kur1			4	Field resistance gene to rice blast found in cv. 'Kuroka'.  Additive with Pi Kur2. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance			GR:0060620		86.0	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000514 - potassium uptake, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
625	PS1	Ps1	PURPLE STIGMA 1 (GAISENMOCHI)	Purple stigma1 (Gaisenmochi), Purple stigma 1, Purple stigma-1(Gaisenmochi)1, Purple stigma-1			4	Make stigma purple. Expressed without P.[347] PO:0006497; stigma epidermis (sensu Poaceae). GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060703		89.0	GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0006061 - stigma epidermis 
626	ST4	st4(ws2), ws2, st4	STRIPE 4	stripe4, stripe 4, stripe-4			4	This mutant exhibits white leaf tip at the seedling stage and white stripes on leaf with white midrib during growth. White stripes also appear on panicle. PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060931		90.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
627	GA6	ga6	GAMETOPHYTE GENE 6	gametophyte gene6, gametophyte gene 6, gametophyte gene-6			4		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060348		91.0	GO:0019953 - sexual reproduction		
628	LG	lg	LIGULELESS	liguleless		lg-a	4	Ligule, auricle and leaf collar are absent. [298] . Allele lg-a has very short ligules, underdeveloped auricles, narrow leaf collars, and erect stature.  Similar to but different from the gene aul.  Order of dominancy is lg+ > lg-a > lg. [247] PO:0020105; ligule ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Leaf			GR:0060496		95.0	GO:0007275 - multicellular organismal development	TO:0000024 - ligule length, TO:0000335 - ligule shape	PO:0009025 - vascular leaf , PO:0020105 - ligule 
629	FLO2	flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2	FLOURY ENDOSPERM 2	floury endosperm2, floury endosperm 2, floury endosperm-2, Floury 2		flo2, flo2(CNY8-1), flo2(CNY8-2), flo2(CNY8-3)	4	Endosperm is floury white. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. LOC_Os04g55230.	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os04g0645100	LOC_Os04g55230.1	GR:0060331		105.0	GO:0005829 - cytosol, GO:0005976 - polysaccharide metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009568 - amyloplast starch grain, GO:0009085 - lysine biosynthetic process	TO:0000266 - chalky endosperm, TO:0000615 - abscisic acid sensitivity, TO:0002661 - seed maturation, TO:0000490 - protein composition related trait, TO:0000104 - floury endosperm, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000105 - dull endosperm, TO:0000196 - amylose content, TO:0000162 - seed quality	PO:0009089 - endosperm 
630	PI5	Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2	PYRICULARIA ORYZAE RESISTANCE 5	Pyricularia oryzae resistance 5, Magnaporthe grisea resistance-5, Blast resistance 5			9	resistant to several races of Pyricularia grisea. [RGN12:19]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Pi5 locus was previously reported to be linked to the RG788 on chromosome 4. Pi3(t) and Pi5(t) are the same resistance gene. Original line is Moroberekan (Japonica).  The two NB-LRR genes Pi5-1 and Pi5-2 are required for rice Pi5-mediated resistance to M. oryzae (Lee et al. 2009). EU869185(LOC_Os09g15840=Os09g0327600) = Pi5-1, EU869186(LOC_Os09g15850=Os09g0327800) = Pi5-2	 Tolerance and resistance - Disease resistance	Os09g0327600	LOC_Os09g15840.1	GR:0060632		122.0	GO:0009620 - response to fungus	TO:0000502 - potassium chlorate resistance, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
631	PRPB	Prpb(Pb), Pb, Prpb, Prp2	PURPLE PERICARP-B	Purple pericarp-b, Purple pericarp-2			4	Make pericarp purple in complementary action with Prp-a. If Prp-b alone, pericarp is colored brown. [84] Purple pericarp. PO:0009088; seed coat. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060699		127.0	GO:0009812 - flavonoid metabolic process	TO:0000190 - seed coat color	PO:0009088 - seed coat 
632	PL	Pl, Pl1	PURPLE LEAF	Purple leaf, Purple leaf-1		Pl-w, Pl-i, Pl-j	4	Make leaf blade, leaf sheath, leaf collar, auricles, ligule, node and internode purple.  Pl-w and Pl-i are alleles at Pl locus. Pl-w makes leaf blade, leaf sheath, auricles, ligule,  and pericarp purple. Pl-i makes leaf blade, leaf sheath, ligule and internode colored. PO:0020106; auricle ; PO:0020142; stem internode ; PO:0006012; leaf collar ; PO:0009025; leaf ; PO:0020105; ligule ; PO:0020104; leaf sheath ; PO:0020141; stem node. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. OSB1 (Os04g0557800) and OSB2 (Os04g0557500) are the major components of the Plw allele (Sakamoto et al. 2001).	 Coloration - Anthocyanin	Os04g0557800/Os04g0557500		GR:0060671		127.0	GO:0009812 - flavonoid metabolic process	TO:0000364 - leaf collar color, TO:0000426 - internode color, TO:0000299 - leaf lamina color, TO:0000059 - node color, TO:0000197 - ligule color, TO:0000294 - auricle color, TO:0000367 - basal leaf sheath color	PO:0006012 - leaf collar , PO:0009025 - vascular leaf , PO:0020104 - leaf sheath , PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0020141 - stem node , PO:0020142 - stem internode 
633	ST5	st5	STRIPE 5	stripe5, stripe 5, stripe-5			4	This mutant exhibits fine stripes on leaf blade and sheath through growing period and these stripes are also expressed in glumes. PO:0009037; lemma ; PO:0009038; palea ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060932		165.0	GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content, TO:0000264 - lemma and palea color	PO:0009025 - vascular leaf , PO:0009037 - lemma , PO:0009038 - palea 
634	D3	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3	DWARF BUNKETSUWAITO TILLERING	bunketsuwaito tillering dwarf, dwarf-3, F-box/LRR-repeat MAX2 homolog, F-box and leucine-rich repeat MAX2 homolog, DWARF 3, DWARF-3, suppressor of lazy1, DWARF3, ORESARA 9, MAX2 ortholog	F-BOX/LRR-REPEAT MAX2 HOMOLOG	d3, d3-1, d3-2, sol1, sol1-1, sol1-2, d3 300097, gsor300097	6	Profuse tillering with slender leaves. Duplicate or triplicate. Q5VMP0. PO:0009047; stem ; PO:0006343; axillary shoot ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.  F-box protein. LOC_Os06g06050. a rice homolog of Arabidopsis ORESARA 1. LOC_Os06g06050. an F-box component of the Skp-Cullin-F-box (SCF) E3 ubiquitin ligase complex.  GO:0090548: response to nitrate starvation.	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os06g0154200	LOC_Os06g06050.1	GR:0060186		168.0	GO:0005634 - nucleus, GO:0009416 - response to light stimulus, GO:0009851 - auxin biosynthetic process, GO:0009959 - negative gravitropism, GO:0010150 - leaf senescence, GO:0007275 - multicellular organismal development, GO:0009926 - auxin polar transport, GO:0009934 - regulation of meristem structural organization, GO:0010016 - shoot morphogenesis, GO:0010223 - secondary shoot formation, GO:0009414 - response to water deprivation, GO:0009755 - hormone-mediated signaling, GO:0009651 - response to salt stress	TO:0000370 - leaf width, TO:0000207 - plant height, TO:0000567 - tiller angle, TO:0002693 - gravity response trait, TO:0002672 - auxin content, TO:0002639 - shoot branching, TO:0000249 - leaf senescence, TO:0000576 - stem length, TO:0000346 - tiller number, TO:0000152 - panicle number, TO:0000077 - shoot anatomy and morphology trait, TO:0000401 - plant growth hormone sensitivity, TO:0000011 - nitrogen sensitivity, TO:0001013 - lateral root number, TO:0000586 - seminal root length, TO:0006001 - salt tolerance, TO:0000544 - mesocotyl length	PO:0009047 - stem , PO:0009025 - vascular leaf , PO:0006343 - axillary shoot system 
635	ACS3	ACC3*, ACC3, OsACS3, OS-ACS3	ACC SYNTHASE 3	ACC synthase 3, ACC synthase-3, 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 3	ACC SYNTHASE 3		5	U65702.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0196600	LOC_Os05g10780.1	GR:0060005			GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity		
636	ALD1	Ald1*, Ald1	ALDOLASE 1	Aldolase1, Aldolase 1, Aldolase-1	ALDOLASE 1		5		 Biochemical character			GR:0060031			GO:0016832 - aldehyde-lyase activity		
637	AN2	An2	AWN 2	Awn2, Awn 2, Awn-2			5	triplicate gene. PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060049			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
638	ARF1	Arf1*, Arf1, ARF-1	ADP RIBOSYLATION FACTOR 1	ADP ribosylation factor(ARF)1, ADP ribosylation factor (ARF)-1, ADP ribosylation factor-1, ribosylation factor 1	ADP RIBOSYLATION FACTOR 1		5		 Biochemical character			GR:0060060			GO:0006886 - intracellular protein transport, GO:0006471 - protein amino acid ADP-ribosylation		
639	ATP	ATP*(atp1), ATPX, atp1	ATPASE SUBUNIT 1	ATPase	ATPASE SUBUNIT 1		5		 Biochemical character			GR:0060063			GO:0016887 - ATPase activity		
640	BC2	bc2, bc-2	BRITTLE CULM 2	brittle culm2, brittle culm 2, brittle culm-2			5	The culms and leaves of this recessive mutant break very easily.  The mutant character is expressed at all stages of growth. PO:0009047; stem ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060069		87.0	GO:0009808 - lignin metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0031225 - anchored to membrane, GO:0005886 - plasma membrane, GO:0009531 - secondary cell wall, GO:0009834 - secondary cell wall biogenesis	TO:0000108 - leaf shattering, TO:0000061 - node shattering, TO:0000051 - stem strength	PO:0009025 - vascular leaf , PO:0009047 - stem 
641	BD1	bd1	BEAKED LEMMA 1	beaked lemma1, beaked lemma 1, beaked lemma-1			5	The tip of lemma bends as beak shape. Duplicate gene with bd-2. PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060074			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea 
642	CALA	CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1	CALMODULIN A	Calmodulin-1, Calmodulin-a, Calmodulin-2, calmodulin 2	CALMODULIN A		5	Q6F332(japonica), A2Y609(indica). C73257. D10434 (partial cds). D15295. AF441190. OsCaM1 in Li et al. 2006.	 Biochemical character	Os05g0491100	LOC_Os05g41210.1	GR:0060107			GO:0009612 - response to mechanical stimulus, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding, GO:0005634 - nucleus		
643	CHT2	Cht2*, Cht2, RC7, OsChia1b, Chia1b	CHITINASE 2	Chitinase 2, Pathogenesis related (PR)-3 chitinase 2 ; Class I chitinase b, Chitinase-2(class I)	CHITINASE 2		5	EC=3.2.1.14 PR-3 chitinase. pathogenesis related 3 chitinase. Os05g0399300. LOC_Os05g33130. Q7DNA1.	 Biochemical character	Os05g0399300	LOC_Os05g33130.1	GR:0060134			GO:0051707 - response to other organism, GO:0008843 - endochitinase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008061 - chitin binding, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process, GO:0050832 - defense response to fungus, GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
644	EM	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1	ABA REGULATED GENE	ABA regulated gene, ABA-regulated gene, Embryonic abundant protein 1, Em protein, Early methionine labelled polypeptide, Abscisic acid induced protein, Embryogenic protein, late embryogenesis abundant protein 21	EMBRYONIC ABUNDANT PROTEIN 1		5	expressed late in embryogenesis. P46520. OSEM is one of rice LEA genes and is activated by OSVP1 and ABA. U22102. X63126. OSU22102. a group I LEA protein. GO:2000070: regulation of response to water deprivation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0349800	LOC_Os05g28210.1	GR:0060291			GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0048700 - acquisition of desiccation tolerance, GO:0009737 - response to abscisic acid stimulus, GO:0009688 - abscisic acid biosynthetic process, GO:0047484 - regulation of response to osmotic stress	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	
645	ER	er(o), o, er	ERECT GROWTH HABIT	erect growth habit			5	PO:0009047; stem.	 Vegetative organ - Culm			GR:0060298			GO:0040007 - growth	TO:0000427 - culm angle	PO:0009047 - stem 
646	EST13	Est13	ESTERASE 13	Esterase13, Esterase 13, Esterase-13	ESTERASE 13	Est13-1, Est13-2	5	Monomers. P(PAGE-TC). The band migrates slower than that of Est10, expressed as a beta-NAc-specific red double band.	 Biochemical character			GR:0060317			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
647	EUI1	eui1, GA16, 17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI	ELONGATED UPPERMOST INTERNODE 1	elongated uppermost internode, elongated uppermost internode-1, Elongation of Upper most Internode, ELONGATED UPPERMOST INTERNODE1, dwarf Eui1	CYTOCHROME CYP714D1	eui1, qui, dEui1	5	LOC_Os05g40384. This character is manifested only at flowering.  The uppermost node is elongated. [228]  GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.AY987039, AY987040. Eui gene encodes a previously uncharacterized cytochrome P450 monooxygenase, CYP714D1.  TO: 0000870: leaf yield trait.  TO:0006049: iron concentration.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os05g0482400	LOC_Os05g40384.1	GR:0060320		125.0	GO:0009685 - gibberellin metabolic process, GO:0032940 - secretion by cell, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009826 - unidimensional cell growth, GO:0022900 - electron transport chain, GO:0045487 - gibberellin catabolic process, GO:0004497 - monooxygenase activity, GO:0010229 - inflorescence development, GO:0007275 - multicellular organismal development, GO:0010106 - cellular response to iron ion starvation	TO:0000576 - stem length, TO:0000145 - internode length, TO:0000224 - iron sensitivity, TO:0001002 - inflorescence exsertion, TO:0000207 - plant height, TO:0000621 - inflorescence development trait, TO:0000040 - panicle length, TO:0002675 - gibberellic acid content	PO:0001083 - inflorescence development stage , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020142 - stem internode , PO:0007089 - stem elongation stage , PO:0007112 - 1 main shoot growth stage 
648	GH1	gh1, hg	GOLD HULL AND INTERNODE 1	gold hull and internode1, gold hull and internode 1, gold hull and internode-1			5	Make glume and internode gold. PO:0020142; stem internode ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0060365				"TO:0000190_TO:0000426 - \"seed coat color\" or \"internode color\", TO:0000264 - lemma and palea color, TO:0000426 - internode color"	PO:0009010 - seed , PO:0020142 - stem internode 
649	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3	GLABROUS LEAF AND HULL 1	glabrous leaf and hull1, glabrous leaf and hull 1, glabrous leaf and hull-1, WUSCHEL-related homeobox 3B		gl1-1, gl1-2, gl1-3, gl1-4	5	LOC_Os05g02730. duplicate gene. Glabrous leaf and floral glumes with no pubescence. [298] PO:0009038; palea ; PO:0020039; leaf lamina ; PO:0009037; lemma. The gl1 gene is located between SSR markers RM1200/RM17786 and RM2010/RM17801 on chromosome 5. OsWOX2 in Dai et al. 2007. OsWOX3B in Zhang et al. 2012, Sun et al. 2017.  OsWOX3 in Ohmoriet al. 2013, Bakshi et al. 2017. Q5W7C3, A2XZR3. AM490244. GO:2000039: regulation of trichome morphogenesis. TO:0000748: leaf morphology trait.	 Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0118700	LOC_Os05g02730.1	GR:0060368			GO:0007275 - multicellular organismal development, GO:0030154 - cell differentiation, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0010090 - trichome morphogenesis, GO:0006351 - transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding	TO:0000055 - leaf lamina pubescence, TO:0000417 - lemma and palea pubescence,  - palea pubescence	PO:0009037 - lemma , PO:0009038 - palea , PO:0020039 - leaf lamina 
650	GLH6	Glh6	GREEN LEAFHOPPER RESISTANCE 6	Green leafhopper resistance6, Green leafhopper resistance 6, Green leafhopper resistance-6			5	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060381			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
651	GLUP4	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a	GLUTELIN PRECURSOR 4	glutelin precursor4, glutelin precursor 4, glutelin precursor-4, small GTP-binding protein OsRab5B2, small GTP-binding protein OsRab5a, glutelin precursor mutant4, glutelin precursor accumulation 1	GLUTELIN PRECURSOR 4	gpa1, glup4/rab5a, glup4	12	High content of 57kDa polypeptide (glutelin precursor polypeptide) with low content of 40kDa and 20kDa polypeptides. This gene is located on chromosome 12 in 5.9cM interval between PCR markers L714 and C901. PO:0009010; seed. AY029301. LOC_Os12g43550.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os12g0631100	LOC_Os12g43550.2, LOC_Os12g43550.1	GR:0060414			GO:0016482 - cytoplasmic transport, GO:0045735 - nutrient reservoir activity, GO:0015031 - protein transport, GO:0006970 - response to osmotic stress, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0005768 - endosome, GO:0007264 - small GTPase mediated signal transduction, GO:0009651 - response to salt stress	TO:0000490 - protein composition related trait, TO:0006001 - salt tolerance, TO:0000109 - endosperm storage protein-2 content, TO:0000095 - osmotic response sensitivity	PO:0009010 - seed 
652	GRH1	Grh1	GREEN RICE LEAFHOPPER RESISTANCE 1	Green rice leafhopper resistance1, Green rice leafhopper resistance 1, Green rice leafhopper resistance-1			5	duplicate or complementary. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060432			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
653	IPL1	IPl1	INHIBITOR FOR PURPLE LEAF 1	Inhibitor for Purple leaf 1, Inhibitor for purple leaf-1			5	Inhibitor for Pl or Plw. Plw is inhibited by IPl1 together with IPl2 or IPl3 in duplicate or triplicate action. PO:0020106; auricle ; PO:0020142; stem internode ; PO:0006012; leaf collar ; PO:0009025; leaf ; PO:0020105; ligule ; PO:0020141; stem node. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060474			GO:0009812 - flavonoid metabolic process	TO:0000299 - leaf lamina color, TO:0000059 - node color, TO:0000364 - leaf collar color, TO:0000197 - ligule color, TO:0000294 - auricle color, TO:0000426 - internode color	PO:0006012 - leaf collar , PO:0009025 - vascular leaf , PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0020141 - stem node , PO:0020142 - stem internode 
654	MPOX1	M Pox1(M px1), MPx1, MPox1, Pox7	MODIFIER FOR PEROXIDASE POX 1	Modifier for peroxidase Pox1, Modifier for peroxidase (Pox1), Peroxidase-7	MODIFIER FOR PEROXIDASE POX 1	M Pox1-0, M Pox1-1	5	Modifier to peroxidase Pox1.	 Biochemical character			GR:0061118			GO:0016693 - secretory plant peroxidase activity, GO:0004601 - peroxidase activity		
655	MDH3	Mdh3*, Mdh3	MALATE DEHYDROGENASE(NAD) 3	Malate dehydrogenase(NAD)3, Malate dehydrogenase (NAD) 3, Malate dehydrogenase (NAD)-3	MALATE DEHYDROGENASE(NAD) 3		5	Dimer. P(ST-H). Variant is known only in wild taxa.	 Biochemical character			GR:0060522			GO:0016615 - malate dehydrogenase activity		
656	MS14	ms14	MALE STERILE 14	male sterile14, male sterile 14, male sterile-14			5	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060551			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
657	OC2	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2	ORYZACYSTATIN 2	Oryzacystatin2, Cysteine proteinase inhibitor 2, Oryzacystatin-2, Oryzacystatin II, Oryzacystatin-II, Oryzacystatin-III	ORYZACYSTATIN 2		5	P20907. J05595. X57658. AB125972, AB125973. OC-III in Ohtsubo et al. 2005. a member of phytocystatin.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os05g0494200	LOC_Os05g41460.2, LOC_Os05g41460.1	GR:0060579			GO:0030414 - peptidase inhibitor activity, GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0006952 - defense response, GO:0009536 - plastid	TO:0000054 - animal damage resistance	
658	PI10	Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t)	PYRICULARIA ORYZAE RESISTANCE 10	Pyricularia oryzae resistance 10, Magnaporthe grisea resistance 10, Blast resistance 10			5	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Map position (88.5-102.8 cM). Original line is Tongil (Indica).	 Tolerance and resistance - Disease resistance			GR:0060637			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000483 - germinability at low temperature, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
659	POX1	Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74	PEROXIDASE 1	Peroxidase1, Peroxidase 1 precursor, Peroxidase 1, Peroxidase-1, class III peroxidase 74	PEROXIDASE 1	Pox1-0, Pox1-1 (Pox1-2A), Pox1-2 (Pox1-0C)	5	Dimer. L(ST). Monomorphic in cultivars. Pox1-2 is specific to perennial type of O. rufipogon. EC=1.11.1.7 P37834. BN000603.	 Biochemical character	Os05g0499300	LOC_Os05g41990.1	GR:0060685			GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding, GO:0005576 - extracellular region, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0020037 - heme binding, GO:0042744 - hydrogen peroxide catabolic process, GO:0055114 - oxidation reduction		
660	PRO2	Pro2*, Pro2	PROLAMIN 2	Prolamin2, Prolamin 2, Prolamin-2	PROLAMIN 2		5	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060693			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
661	PRO3	Pro3*, Pro3	PROLAMIN 3	Prolamin3, Prolamin 3, Prolamin-3	PROLAMIN 3		5	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060694			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
662	PRO5	Pro5*, Pro5	PROLAMIN 5	Prolamin5, Prolamin 5, Prolamin-5	PROLAMIN 5		5	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060696			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
663	RK3	Rk3	ROUND KERNEL 3	Round kernel3, Round kernel 3, Round kernel-3			5	This dominant mutant can be distiguished from the normal by its small and round kernels. [401] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060763		89.0		TO:0000149 - seed width, TO:0000287 - brown rice shape, TO:0000391 - seed size	PO:0009010 - seed 
664	SD7	sd7, sd7(t)	SEMIDWARF 7	semidwarf7 (D5631), semidwarf-7(D65-31), semidwarf-7, semidwarf 7			5	Reduction in length of the 2nd to 5th internodes from the top. [RGN6:6] PO:0009047; stem.	 Vegetative organ - Culm			GR:0060848			GO:0009826 - unidimensional cell growth	TO:0000207 - plant height, TO:0000145 - internode length, TO:0000576 - stem length	PO:0009047 - stem 
665	SDG	sdg*, sd11	SEMIDWARF(BRGPC)	semidwarf (BRGPC), semidwarf(BRGPC), semidwarf-11, SEMIDWARF			5	PO:0009047; stem.	 Vegetative organ - Culm			GR:0060852			GO:0009826 - unidimensional cell growth	TO:0000207 - plant height, TO:0000576 - stem length	PO:0009047 - stem 
666	SHP3	Shp3(Ga), Ga, Shp3	SHEATHED PANICLE 3	Sheathed panicle3, Sheathed panicle 3, Sheathed panicle-3			5	complementary. PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060887			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000089 - panicle type, TO:0000165 - panicle exsertion, TO:0000145 - internode length	PO:0009049 - inflorescence , PO:0020142 - stem internode 
667	WGL	wgl(t)*, wgl	SPIKELET WIDTH	spikelet width		wgl-n(t)	5	This gene widens the width of spikelet.[157] PO:0009039; glume ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061000			GO:0007275 - multicellular organismal development	TO:0000149 - seed width	PO:0009082 - spikelet floret , PO:0009039 - glume 
668	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 5	Xanthomonas oryzae pv. oryzae resistance 5, Xanthomonas campestris pv. oryzae resistance-5, Xanthomonas oryzae pv. oryzae resistance-5, Transcription initiation factor IIA subunit 2, General transcription factor IIA subunit 2, Transcription initiation factor IIA gamma chain, TFIIA-gamma, gamma subunit of transcription factor IIA, basal transcription factor IIA gamma subunit  5	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	OsTFIIAgamma5V39E, OsTFIIAgamma5V39D, OsTFIIAgamma5V39A, OsTFIIAgamma5V39L, OsTFIIAgamma5V39Q	5	Resistant to the all six Philippine isolates.This gene is located on chromosome 5 flanked by markers RS7 and RM611. A2XZI2(indica). Q0DLD3(japonica). PO:0009025; leaf. GRO:0007146; vegetative lag phase. AY643717, AF532975, AY643716. 	 Tolerance and resistance - Disease resistance	Os05g0107700	LOC_Os05g01710.3, LOC_Os05g01710.2, LOC_Os05g01710.1	GR:0061015			GO:0005672 - transcription factor TFIIA complex, GO:0042742 - defense response to bacterium, GO:0006367 - transcription initiation from RNA polymerase II promoter, GO:0003702 - RNA polymerase II transcription factor activity, GO:0003743 - translation initiation factor activity, GO:0045449 - regulation of transcription, GO:0006952 - defense response, GO:0006412 - translation	TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance	PO:0009025 - vascular leaf 
669	YLB	ylb, z14	YELLOW BANDED LEAF BLADE	yellow banded leaf blade, zebra-14			5	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0061043			GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000165 - panicle exsertion	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
670	Z7	z7	ZEBRA 7	zebra7, zebra 7, zebra-7			5	Seedlings show distinct yellow bands from emergence to 20days after seeding.The chlorotic bands appear again at early tillering but do not persist at later growth stage. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061053		163.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
671	_	OsPAL04, PAL04, PAL, OsPAL7, PAL7	PHENYLALANINE AMMONIA-LYASE	Phenylalanine ammonia lyase	PHENYLALANINE AMMONIA-LYASE		5	LOC_Os05g35290. OsPAL7 in Tonnessen et al. 2014,  Zhou et al. 2018, Xu et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0427400	LOC_Os05g35290.1	GR:0061060			GO:0006559 - L-phenylalanine catabolic process, GO:0009058 - biosynthetic process, GO:0016211 - ammonia ligase activity, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0009620 - response to fungus, GO:0016841 - ammonia-lyase activity	TO:0000074 - blast disease, TO:0000432 - temperature response trait	
672	NL2	nl2	NECK LEAF 2	neck leaf2, neck leaf 2, neck leaf-2			5	PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060574		6.0	GO:0030154 - cell differentiation	TO:0000089 - panicle type	PO:0009049 - inflorescence 
673	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89	DAIKOKU DWARF	daikoku dwarf, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 7, dwarf-1, Guanine nucleotide-binding protein alpha-1 subunit, GP-alpha-1, Protein Dwarf1, G-protein alpha subunit, GP-alpha-1, G-protein alpha subunit 1, dwarf69, dwarf 69, GTP binding protein alpha-subunit, dwarf 89, rice G protein a subunit 1, G protein a subunit 1	GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT	d1, d89, d1-5, rga1, d1-c	5	One third of normal height, having short thick leaves of dark green color. Internodes are thick and sometimes the second internode does not elongate. Grain is small and round. D38232. L35844. A2Y3B5(indica). Q0DJ33(japonica). PO:0009047; stem ; PO:0000003; whole plant ; PO:0009049; inflorescence ; PO:0009010; seed ; PO:0020039; leaf lamina ; PO:0020142; stem internode ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. L35844, AY792541-AY792546 (O. sativa and other wild rice species). AY299684, AY188586, AY188587, AY188596, AY188597 (wild rice species).  L28001. DQ223335-DQ223343, DQ223368-DQ223382, DQ223400, DQ223401, DQ223409-DQ223413, DQ911247 (wild rice species). LOC_Os05g26890. HQ634688.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os05g0333200	LOC_Os05g26890.1	GR:0060184		30.0	GO:0009408 - response to heat, GO:0006471 - protein amino acid ADP-ribosylation, GO:0009737 - response to abscisic acid stimulus, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0007275 - multicellular organismal development, GO:0009740 - gibberellic acid mediated signaling, GO:0009755 - hormone-mediated signaling, GO:0005525 - GTP binding, GO:0004871 - signal transducer activity, GO:0010038 - response to metal ion, GO:0003924 - GTPase activity, GO:0005834 - heterotrimeric G-protein complex	TO:0000484 - seed shape, TO:0000576 - stem length, TO:0000135 - leaf length, TO:0000397 - grain size, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000080 - micronutrient sensitivity, TO:0000326 - leaf color, TO:0000299 - leaf lamina color, TO:0000145 - internode length, TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000492 - leaf shape, TO:0000391 - seed size, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000370 - leaf width, TO:0000401 - plant growth hormone sensitivity, TO:0002730 - grain shape, TO:0000089 - panicle type, TO:0000158 - red light sensitivity, TO:0000303 - cold tolerance, TO:0000132 - basal internode diameter	PO:0009049 - inflorescence , PO:0020039 - leaf lamina , PO:0020142 - stem internode , PO:0000003 - whole plant , PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem 
674	ST2	st2(gw), gw, st2	STRIPE 2	stripe2, stripe 2, stripe-2			5	White streakes appear not only in leaf blade but also in leaf sheath, stem and even in spikelet through the whole green stage. [298] PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060929		49.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000056 - stem color, TO:0000190 - seed coat color, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009088 - seed coat , PO:0020104 - leaf sheath 
675	AL3	al3, alK3	ALBINO 3	albino3, albino 3, albino-3			5	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060022		51.0	GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
676	SPL8	spl8(bl8), spl8, bl8	SPOTTED LEAF 8	spotted leaf8, spotted leaf-8			5	Fine striped spots of reddish brown appear on whole surface of leaves after tillering stage. [137] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060909		51.0	GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
677	AL6	al6(t), al6, alK6	ALBINO 6	albino6, albino 6, albino-6			5	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060025		56.0	GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
678	FLO1	flo1, flo1-1, o	FLOURY ENDOSPERM 1	floury endosperm1, floury endosperm 1, opaque, floury endosperm-1			5	Endosperm is floury white. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060330		63.0	GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000266 - chalky endosperm, TO:0000104 - floury endosperm	PO:0009089 - endosperm 
679	OPS	ops	OPEN HULL STERILE	open hull sterile			5	Due to an abnormal shape of palea and lemma, they are open before anthesis. After anthesis, there are many spikelets  incompletely closed causing sterility. PO:0009038; palea ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Other sterilities			GR:0060585		69.0	GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000180 - spikelet fertility, TO:0000437 - male sterility, TO:0000474 - glume opening	PO:0009082 - spikelet floret , PO:0009037 - lemma , PO:0009038 - palea 
680	V10	v10	VIRESCENT 10	virescent10, virescent 10, virescent-10			5	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060989		77.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
681	BGL	bgl, OsRopGEF10, Os RopGEF10, RopGEF10	BRIGHT GREEN LEAF	bright green leaf, guanine nucleotide exchange factor for Rop 10, GEF for ROP 10, Rop-specific GEF10, Rop-specific guanine nucleotide exchange factor 10			5	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll	Os05g0454200	LOC_Os05g38000.2, LOC_Os05g38000.1	GR:0060078		82.0	GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process, GO:0005089 - Rho guanyl-nucleotide exchange factor activity	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
682	RI	ri	VERTICILLATE RACHIS	verticillate rachis			5	PO:0006321; second order inflorescence branch ; PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060756		85.0	GO:0007275 - multicellular organismal development	TO:0000052 - primary branching of inflorescence, TO:0000089 - panicle type	PO:0006321 - primary inflorescence branch , PO:0009049 - inflorescence 
683	SPL7	spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1	SPOTTED LEAF 7	spotted leaf7, spotted leaf-7, Heat stress transcription factor Spl7, Heat stress transcription factor A-4d, Heat stress transcription factor 15, Heat stress transcription factor 10, Protein SPOTTED LEAF 7, HEAT STRESS TRANSCRIPTION FACTOR A4d, spontaneous lesion 7	HEAT STRESS TRANSCRIPTION FACTOR A-4D	spl7	5	LOC_Os05g45410. Relatively small reddish brown spots scattering over the whole surface of leaves.  They appear from tillering stage to heading time. The phenotypes of spl3, spl5 and spl7 are similar, being difficult to distinguish each other. [137] Q93VB5. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage. AC111015. KC610831-KC610843 (O. sativa and wild rice species, partial cds). AY885947-AY885975 and DQ374857-DQ374884  (O. sativa and other wild rice species, partial cds).	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Stress tolerance	Os05g0530400	LOC_Os05g45410.1	GR:0060908		100.0	GO:0006350 - transcription, GO:0006950 - response to stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0045449 - regulation of transcription, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000069 - variegated leaf, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
684	NL1	nl1, OsGATA15, GATA15	NECK LEAF 1	neck leaf1, neck leaf 1, neck leaf-1, NECK LEAF1, GATA transcription factor 15, GATA factor 15	GATA TYPE TRANSCRIPTION FACTOR	nl1-1, nl1-2, nl1-3	5	LOC_Os05g50270. A neck leaf is an extra leaf grown from the basal node of panicle. Usually most part of panicle is not covered by this neck leaf, but the panicle of NL1 mutant is covered by the neck leaf. If this is longer than a panicle, the spikelet does not appear from the leaf sheath when matured. PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. DQ784546. C2C2-GATA (GATA C2C2 zinc finger transcription factor). a paralog of Arabidopsis HAN.	 Reproductive organ - Inflorescence	Os05g0578900	LOC_Os05g50270.1	GR:0060573		110.0	GO:0030154 - cell differentiation	TO:0000089 - panicle type	PO:0009049 - inflorescence 
685	AL2	al2, alK2	ALBINO 2	albino2, albino 2, albino-2			5	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060021		111.0	GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
686	AL1	al1(alK1), alK1, al1	ALBINO 1	albino1, albino 1, albino-1			6	Chlorophyl is not developed from germination. Albino plant dies at seedling. PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060020			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
687	AL9	al9(t), al9	ALBINO 9	albino9, albino 9, albino-9			6	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060028			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
688	AMP5	Amp5	AMINOPEPTIDASE 5	Aminopeptidase5, Aminopeptidase 5, Aminopeptidase-5	AMINOPEPTIDASE 5	Amp5-0, Amp5-1, Amp5-2, Amp5-3, Amp5-4, Amp5-5, Amp5-10	6	Monomers. S(PAGE-ST). The band migrates faster than taht of Amp1. Active in seed and stained by Leu-NAm substrate. Differential allele frequencies between India & Japonica types.	 Biochemical character			GR:0060040			GO:0004177 - aminopeptidase activity		
689	AMY2A	Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A	ALPHA-AMYLASE 2A	Alpha-amylase2A, Alpha-amylase isozyme 2A, Alpha-amylase isozyme C2, Alpha-amylase-2A, Amylase-4	ALPHA-AMYLASE 2A		6	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. LOC_Os06g49970. Q0D9J1(japonica), A2YGY2(indica).	 Biochemical character	Os06g0713800	LOC_Os06g49970.2	GR:0060045			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0004556 - alpha-amylase activity, GO:0005509 - calcium ion binding, GO:0005975 - carbohydrate metabolic process, GO:0005983 - starch catabolic process, GO:0005987 - sucrose catabolic process, GO:0032940 - secretion by cell		
690	APH	aph	APICULUS HAIRS	apiculus hairs			6	PO:0006033; paleal apiculus ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060059			GO:0007275 - multicellular organismal development	 - palea pubescence, TO:0000417 - lemma and palea pubescence	PO:0006033 - paleal apiculus , PO:0009088 - seed coat 
691	BC4	bc4, bc-4	BRITTLE CULM 4	brittle culm4, brittle culm 4, brittle culm-4			6	This mutant has a brittle culm and leaves that break very easily.  The mutant trait is expressed at all growth stages. PO:0009047; stem ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060071		9.0	GO:0009531 - secondary cell wall, GO:0009808 - lignin metabolic process, GO:0031225 - anchored to membrane, GO:0009834 - secondary cell wall biogenesis, GO:0005886 - plasma membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000061 - node shattering, TO:0000051 - stem strength, TO:0000108 - leaf shattering	PO:0009025 - vascular leaf , PO:0009047 - stem 
692	CAT1	Cat1, Cat_1	CATALASE 1	Catalase1, Catalase 1, Catalase-1	CATALASE 1	Cat1-1, Cat1-2, Cat1-3, Cat1-0	6	Tetramer. S,P&C(PAGE-TC), P & PO(ST-H). Differential allele frequencies. between Indica and Japonica types. Thermomorphs are known.	 Biochemical character			GR:0060110			GO:0004096 - catalase activity		
693	CHL7	chl7	CHLORINA 7	chlorina7, chlorina 7, chlorina-7			6	This chlorophyll mutant has distinct yellowish leaves and is early maturing.  The character is expressed from seedling to maturity. [228] PO:0009010; seed ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0060124			GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000469 - days to maturity, TO:0000496 - carotenoid content	PO:0009010 - seed , PO:0009025 - vascular leaf 
694	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1	CHITINASE 1	Chitinase1, Chitinase 1, Pathogenesis related (PR)-3 chitinase 1, Class I chitinase a, Chitinase-1(class I)	CHITINASE 1		6	"LOC_Os06g51060. EC=3.2.1.14 PR-3 chitinase, pathogenesis related 3 chitinase, POLY-BETA-GLUCOSAMINIDASE, CHITODEXTRINASE, \"1,4-BETA- POLY-N-ACETYLGLUCOSAMINIDASE\". Q42993. D16221. X87109. Z29961. D10423 (partial cds). X56063."	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0726200	LOC_Os06g51060.1	GR:0060133			GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin, GO:0016998 - cell wall macromolecule catabolic process, GO:0050832 - defense response to fungus, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009751 - response to salicylic acid stimulus, GO:0008843 - endochitinase activity, GO:0008061 - chitin binding, GO:0006032 - chitin catabolic process, GO:0051707 - response to other organism, GO:0009723 - response to ethylene stimulus, GO:0004568 - chitinase activity, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000401 - plant growth hormone sensitivity, TO:0000315 - bacterial disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000173 - ethylene sensitivity, TO:0000439 - fungal disease resistance, TO:0000074 - blast disease	
695	CHT3	Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11	CHITINASE 3	Chitinase3, Basic endochitinase 1 precursor, Basic endochitinase 1, Chitinase 3, Pathogenesis related (PR)-3 chitinase 3, Class I chitinase c, Chitinase-3(class I), CHITINASE7	CHITINASE 3		6	LOC_Os06g51050.EC=3.2.1.14 PR-3 chitinase. pathogenesis related 3 chitinase. P24626. Z29962. X54367. CHI7 in Khong et al. 2015. OsCHI11 in Karmakar et al. 2016 and 2017. HC733649.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0726100	LOC_Os06g51050.1	GR:0060135			GO:0051707 - response to other organism, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0004568 - chitinase activity, GO:0006032 - chitin catabolic process, GO:0006040 - amino sugar metabolic process, GO:0008061 - chitin binding, GO:0008843 - endochitinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0050832 - defense response to fungus, GO:0016231 - beta-N-acetylglucosaminidase activity	TO:0000255 - sheath blight disease resistance	
696	CIF1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf	CROSS-INCOMPATIBILITY IN THE FEMALE REACTION 1	Cross-incompatibility in the female reaction		41.0	6	Low crossabiity when this gene exists in a female parent.  Reciprocal cross shows normal seed setting. Genetic symbol Lcr was changed to Cinf in Kobayashi & Sano, 1996. PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060139			GO:0009856 - pollination, GO:0009566 - fertilization	TO:0000035 - incompatibility trait	PO:0009082 - spikelet floret 
697	D21	d21, dwf18	DWARF AOMORIMOCHI-14	aomorimochi-14 dwarf, dwarf-21			6	short culm and panicles  with narrow leaves. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060201			GO:0007275 - multicellular organismal development	TO:0000484 - seed shape, TO:0000576 - stem length, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000370 - leaf width	PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
698	DRP6	drp6	DRIPPING-WET LEAF 6	dripping-wet leaf6, dripping-wet leaf 6, dripping-wet leaf-6			6	Leaf surface appears wet. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060246			GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
699	DU2035	du2035*, du9, du2035	DULL ENDOSPERM 2035	dull endosperm(2035), dull endoaperm (2035), dull endosperm-9			6	PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060269			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000105 - dull endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
700	DUEM47	duEM47*, du11, duEM47	DULL ENDOAPERM EM 47	dull endoaperm(EM47), dull endoaperm (EM47), dull endosperm-11			6	PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060271			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000105 - dull endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
701	DW1	dw1(fh1), fh1, dw1	DEEP WATER TOLERANCE 1	deep water tolerance1, deep water tolerance 1, deep water tolerance-1			6	duplicate. PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance			GR:0060272			GO:0009413 - response to flooding	TO:0000103 - deepwater stress, TO:0000170 - elongation ability	PO:0000003 - whole plant 
702	EFY	Efy(t)*, Ef6(t)*, Efy	EARLINESS Y	Earliness-y			6	complementary  with Efx  (Sato et al. 1992) PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060283			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000469 - days to maturity, TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
703	ENP1	Enp1*, Enp1	ENDOPEPTIDASE 1	Endopeptidase1, Endopeptidase 1, Endopeptidase-1	ENDOPEPTIDASE 1	Enp1-0, Enp1-1	6	Monomer. P(ST). A null allele was identified.	 Biochemical character			GR:0060296			GO:0004175 - endopeptidase activity		
704	FC2	fc2	FINE CULM 2	fine culm2, fine culm 2, fine culm-2			6	PO:0009047; stem.	 Vegetative organ - Culm			GR:0060323			GO:0007275 - multicellular organismal development	TO:0000339 - stem thickness, TO:0000346 - tiller number	PO:0009047 - stem 
705	GA4	ga4(gaA), gaA, ga4	GAMETOPHYTE GENE 4	gametophyte gene4, gametophyte gene 4, gametophyte gene-4			6		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060346			GO:0019953 - sexual reproduction		
706	GA5	ga5(gaB), gaB, ga5	GAMETOPHYTE GENE 5	gametophyte gene5, gametophyte gene 5, gametophyte gene-5			6		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060347			GO:0019953 - sexual reproduction		
707	GLUP6	glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF	GLUTELIN PRECURSOR 6	glutelin precursor6, glutelin precursor 6, Glutelin precursor-6, GLUTELIN PRECURSOR ACCUMULATION2, glutelin precursor accumulation 2, Vacuolar sorting protein9 domain-containing protein, Rab5-GEF, glutelin precursor mutant6, Rab5a-guanine exchange factor	GLUTELIN PRECURSOR 6	gpa2, glup6/gef, glup6	3	glup6 gene is located on chromosome 3 within 10.4cM region between PCR markers, R10784 and R216. PO:0009010; seed.  ABF95105. LOC_Os03g15650.	 Seed - Physiological traits - Storage substances	Os03g0262900		GR:0060416			GO:0045735 - nutrient reservoir activity, GO:0000919 - cell plate formation, GO:0048528 - post-embryonic root development, GO:0016482 - cytoplasmic transport, GO:0042546 - cell wall biogenesis, GO:0016020 - membrane, GO:0009790 - embryonic development, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0015031 - protein transport	TO:0000490 - protein composition related trait	PO:0009010 - seed 
708	GOT2	Got2, Aat2	ASPARTATE AMINOTRANSFERASE 2	Aspartate aminotranspherase2, Aspartate aminotranspherase 2, Aspartate aminotransferase-2	ASPARTATE AMINOTRANSFERASE 2	Got2-1, Got2-2	6	Dimer. P(ST-C, PAGE).	 Biochemical character			GR:0060428			GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity		
711	IPL2	IPl2	INHIBITOR FOR PURPLE LEAF 2	Inhibitor for purple leaf2, Inhibitor for purple leaf 2, Inhibitor for purple leaf-2			6	Anthocyanin pigmentation on leaf blade and sheath is inhibited by IPl2 in duplicate or triplicate action with IPl1 or IPl3. PO:0020106; auricle ; PO:0020142; stem internode ; PO:0006012; leaf collar ; PO:0009025; leaf ; PO:0020105; ligule ; PO:0020104; leaf sheath ; PO:0020141; stem node. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. 	 Coloration - Anthocyanin			GR:0060475			GO:0009812 - flavonoid metabolic process	TO:0000367 - basal leaf sheath color, TO:0000364 - leaf collar color, TO:0000197 - ligule color, TO:0000294 - auricle color, TO:0000059 - node color, TO:0000426 - internode color, TO:0000299 - leaf lamina color	PO:0006012 - leaf collar , PO:0009025 - vascular leaf , PO:0020104 - leaf sheath , PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0020141 - stem node , PO:0020142 - stem internode 
712	LDH*	Ldh*, Ldh1	LACTATE DEHYDROGENASE 1	Lactate dehydrogenase, Lactate dehydrogenase-1	LACTATE DEHYDROGENASE 1	Ldh1-1, Ldh1-2, Ldh1-3, Ldh1-0	6		 Biochemical character			GR:0060494			GO:0004457 - lactate dehydrogenase activity		
713	MP2	mp2	MULTIPLE PISTIL 2	multiple pistil2, multiple pistil 2, multiple pistil-2			6	florets of this mutant have two or more functional pistils, and two kernels are enclosed within one lemma and palea. [228] PO:0006384; gynoecium (sensu Poaceae) ; PO:0006455; carpel (sensu Poaceae) ; PO:0006441; stamen (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060532			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009062 - gynoecium , PO:0009029 - stamen , PO:0009030 - carpel 
714	PI13	Pi13(t), Pi13(t)*, Pi13	PYRICULARIA ORYZAE RESISTANCE 13	Pyricularia oryzae resistance 13, Magnaporthe grisea resistance 13 (Maowangu), Blast resistance 13			6	One of the two resistant genes found in Maowangu.  Another one is Pi14(t). Resistant  to several races of Pyricularia grisea. [RGN13:17]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060641			GO:0009620 - response to fungus	TO:0000486 - seed color, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
716	PI8	Pi8, Pi-8	PYRICULARIA ORYZAE RESISTANCE 8	Pyricularia oryzae resistance 8, Magnaporthe grisea resistance-8, Blast resistance 8			6	(Pan et al. 1996 Phytopathol. 86). One of the two resistant genes found in Kasalath. Another one is Pi z-t. Resistant  to several races of Pyricularia grisea. [RGN13:16]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060635		98.0	GO:0009620 - response to fungus	TO:0000505 - leaf weight, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
717	PI9	Pi9(t), Pi9(t)*, Pi9, Pi-9(t)	PYRICULARIA ORYZAE RESISTANCE 9	Pyricularia oryzae resistance 9, Magnaporthe grisea resistance-9, Blast resistance 9	NUCLEOTIDE-BINDING SITE LEUCINE-RICH REPEAT PROTEIN		6	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. DQ285630, Original line is O. minuta 75-1-127.	 Tolerance and resistance - Disease resistance	Os06g0146100	LOC_Os06g05359.1	GR:0060636		58.7	GO:0009620 - response to fungus, GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000506 - nitrogen recycling	PO:0009025 - vascular leaf 
718	POX5	Pox5	PEROXIDASE 5	Peroxidase5, Peroxidase 5, Peroxidase-5	PEROXIDASE 5	Pox5-1, Pox5-2	6	Monomer. L(ST-HCL), P(ST-C). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060689			GO:0004601 - peroxidase activity		
719	PS	PS*	PHOTOPERIOD SENSITIVITY	Photoperiod sensitivity			6	PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060702			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
720	RCN5	rcn5	REDUCED CULM NUMBER 5	reduced culm number-5			6	Few tillers under low temperature conditions. [RGN11:10] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060730			GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus, GO:0009826 - unidimensional cell growth	TO:0000346 - tiller number, TO:0000576 - stem length, TO:0000432 - temperature response trait	PO:0009047 - stem 
721	SA1	S A1(A1), A1, S A1	HYBRID STERILITY A 1	Hybrid sterility-A, Sporophytic F2 sterility A			6	duplicate. sporophytic F2 sterility. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060786			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
722	S A1(S1,X1)	s a1(s1,x1), s1, s a1, x1	HYBRID STERILITY A 1	hybrid sterility-a-1			6	duplicate. gametophytic F1 sterility. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060798			GO:0000049 - tRNA binding, GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
723	SB2	S B2(B2), S B2, B2	HYBRID STERILITY B 2	Hybrid sterility-B-2, Sporophytic F2 sterility B			6	PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060790			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
724	SC1	s c1	HYBRID STERILITY C 1	hybrid sterility-c, hybrid sterility-c1			6	gametophytic F1 sterility.  duplicate gene. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060800			GO:0000049 - tRNA binding, GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
725	S D1	s d1	HYBRID STERILITY-D-1	hybrid sterility-d-1, hybrid sterility-d1			6	gametophytic F1 sterility. duplicate. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060802			GO:0007275 - multicellular organismal development, GO:0000049 - tRNA binding	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
726	S1		HYBRID STERILITY 1	Hybrid sterility1, Hybrid sterility 1, Hybrid sterility-1		S1-a, S1g, S1s, S1-g, S1-s	6	Sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060808			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
727	S10		HYBRID STERILITY 10	Hybrid sterility10, Hybrid sterility 10, Hybrid sterility-10		S10-a	6	Gamete eliminator.  Gametic elimination due to an allelic interaction such as S10/S10-a. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060817			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
728	S8		HYBRID STERILITY 8	Hybrid sterility8, Hybrid sterility 8, Hybrid sterility-8		S8-n, S8-i, S8-kn, S8-yp	6	Semi-sterility is expressed as an allelic interactin such as S8-yp/S8-kn. [RGN10:9] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060815			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
729	SAL2	sal2*, sal3	SALT PROTEIN	salT protein, salt protein, salt tolerance-3	SALT PROTEIN		6	PO:0009011; plant structure ; PO:0000003; whole plant.	 Biochemical character,  Tolerance and resistance - Stress tolerance			GR:0060834			GO:0009651 - response to salt stress	TO:0000429 - salt sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
730	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1	STARCH BRANCHING ENZYME 1	"starch branching enzyme1 (Q enzyme1), starch branching enzyme1, Q enzyme1, starch branching enzyme 1, Q-enzyme 1, \"1, 4-alpha-glucan branching enzyme, chloroplast precursor\", \"1, 4-alpha-glucan branching enzyme, chloroplast\", \"1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic\", Q-enzyme 1, starch branching enzyme 1, starch branching enzyme-1, branching enzyme-I, Q-Enzyme I, starch Branching enzyme isoform Type A, Branching enzyme isoform Type A, BE isoform type A, branching enzyme 1"	STARCH BRANCHING ENZYME 1	be1	6	EC=2.4.1.18 Q01401. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. D11082, AF136268, D10838, D10752, AY302112, E07175. HQ712133, HQ712132, HQ712131, HQ712130, HQ712129, HQ712128, HQ712127, HQ712126. AY427568 (promoter). AY886060-AY886090 and DQ374885-DQ374912  (O. sativa and other wild rice species, partial cds).	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os06g0726400	LOC_Os06g51084.8, LOC_Os06g51084.7, LOC_Os06g51084.6, LOC_Os06g51084.5, LOC_Os06g51084.4, LOC_Os06g51084.3, LOC_Os06g51084.2, LOC_Os06g51084.1	GR:0060838			GO:0019252 - starch biosynthetic process, GO:0043169 - cation binding, GO:0009501 - amyloplast, GO:0005976 - polysaccharide metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0003844 - 1,4-alpha-glucan branching enzyme activity, GO:0005982 - starch metabolic process, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0009568 - amyloplast starch grain	TO:0000097 - amylopectin content, TO:0000489 - carbohydrate composition related trait	PO:0009089 - endosperm 
731	SE3	Se3(t), Se3	PHOTOSENSITIVITY 3	Photosensitivity3, Photosensitivity 3, Photoperiod-sensitivity-3			6	PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060862			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000469 - days to maturity, TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
732	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1	PHOTOSENSITIVITY 5	Photosensitivity5, Photosensitivity 5, Photoperiod-sensitivity-5, heme oxygenase 1, heme oxygenase-1, haem oxygenase-1, photoperiod sensitivity5, PHOTOPERIOD SENSITIVITY 5, YELLOW-GREEN LEAF2, YELLOW GREEN LEAF 2	HEME OXYGENASE 1 	se5, ygl2	6	LOC_Os06g40080. Q69XJ4. EU781632. C28969. ACE98543. Earliness due to the loss of photoperiod sensitivity.  Earlier by 46 days than the original cultivar Norin 8 under natural long-day. [RGN10:9] GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. a rice homologue of Arabidopsis HY1. 	 Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os06g0603000	LOC_Os06g40080.1	GR:0060864			GO:0006979 - response to oxidative stress, GO:0009648 - photoperiodism, GO:0006788 - heme oxidation, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0015979 - photosynthesis, GO:0010019 - chloroplast-nucleus signaling pathway, GO:0010024 - phytochromobilin biosynthetic process, GO:0020037 - heme binding, GO:0048573 - photoperiodism, flowering, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0004392 - heme oxygenase (decyclizing) activity, GO:0009536 - plastid, GO:0010075 - regulation of meristem growth, GO:0009585 - red, far-red light phototransduction, GO:0009507 - chloroplast, GO:0060359 - response to ammonium ion	TO:0000326 - leaf color, TO:0000429 - salt sensitivity, TO:0000496 - carotenoid content, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0000469 - days to maturity, TO:0000303 - cold tolerance, TO:0000229 - photoperiod sensitivity, TO:0000432 - temperature response trait, TO:0002715 - chloroplast development trait, TO:0000298 - chlorophyll ratio, TO:0002616 - flowering time, TO:0000495 - chlorophyll content	PO:0009049 - inflorescence , PO:0020033 - coleoptile , PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0020148 - shoot apical meristem , PO:0020103 - flag leaf , PO:0025034 - leaf 
734	SPL4	spl4(bl5), spl4, bl5	SPOTTED LEAF 4	spotted leaf4, spotted leaf 4, spotted leaf-4			6	Relatively large reddish brown spots scattering on leaves, but not so much spots as spl3, spl5 and spl7. [137] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060905			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
735	STVA	Stva(St1), St1, Stva, Stv1	STRIPE DISEASE RESISTANCE A	Stripe disease resistance, Stripe disease resistance-a, Stripe disease resistance-1, STRIPE DISEASE RESISTANCE			6	complementary. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Disease resistance			GR:0060938			GO:0009615 - response to virus	TO:0000148 - viral disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
736	TMS3	tms3(t)*, ms82	THERMOSENSITIVE MALE STERILITY 3	thermosensitive male sterility3, thermosensitive male sterility 3, thermosensitive male sterility-3, male sterile-82			6	PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060957			GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus	TO:0000437 - male sterility, TO:0000067 - genic male sterility-thermo sensitive	PO:0009046 - flower , PO:0009066 - anther 
737	UNA	Una, Un1	UNEVEN GRAIN A	Uneven grain, Uneven grain-a, Uneven grain-1, UNEVEN GRAIN			6	complementary with Unb. The tip of the palea side of the kernel out-grows the tip of the lemma side. uneven kernel. PO:0009038; palea ; PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060976			GO:0007275 - multicellular organismal development	TO:0000287 - brown rice shape	PO:0009010 - seed , PO:0009038 - palea 
738	WC	Wc*(S5-n,S-n), Wc1	WIDE COMPATIBILITY	Wide compatibility, Wide compatibility-1			6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060998			GO:0009856 - pollination, GO:0009566 - fertilization	TO:0000035 - incompatibility trait	
739	XA7	Xa7	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 7	Xanthomonas oryzae pv. oryzae resistance 7, Xanthomonas campestris pv. oryzae resistance-7, Xanthomonas oryzae pv. oryzae resistance-7			6	This gene conveys resistance to race 1 at booting stage.	 Tolerance and resistance - Disease resistance			GR:0061016			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
740	Z13	z13	ZEBRA 13	zebra13, zebra 13, zebra-13			6	This mutant shows irregularly shaped horizontal white bands on the leaves throughout the growth duration. Because of this coalition of white bands, leaves of mature seedling leaves appear dry. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061059			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
741	ZN	zn	ZEBRA NECROSIS	zebra necrosis			6	Necrotic zebra bands of yellow or reddish color appear on the leaf blade with spacing of 3 to 4 mm in distance. [184] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Leaf			GR:0061064			GO:0015995 - chlorophyll biosynthetic process	TO:0000063 - mimic response, TO:0000070 - variegated leaf necrosis, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
742	D4	d4, dwf4	DWARF BUNKETSUWAITO TILLERING	bunketsuwaito tillering dwarf, dwarf-4			6	Dwarf. Profuse tillering with slender leaves. [10003] PO:0009047; stem ; PO:0006343; axillary shoot ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060187			GO:0007275 - multicellular organismal development	TO:0000346 - tiller number, TO:0000576 - stem length, TO:0000207 - plant height, TO:0000370 - leaf width	PO:0006343 - axillary shoot system , PO:0009025 - vascular leaf , PO:0009047 - stem 
743	IPL4	IPl4	INHIBITOR FOR PURPLE PERICARP 4	Inhibitor for purple pericarp-4			6	Anthocyanin pigmentation on caryopsis by Plw is inhibited by IPl4 in duplicate action with IPl5. Inhibitor for purple pericarp. PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage..	 Coloration - Anthocyanin			GR:0060477		9.0	GO:0009812 - flavonoid metabolic process	TO:0000487 - endosperm color, TO:0000190 - seed coat color, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf , PO:0009088 - seed coat 
744	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS, OsWx	GLUTINOUS ENDOSPERM	"glutinous endosperm, waxy, Waxy, WAXY, \"Granule-bound starch synthase 1, chloroplastic/amyloplastic\", Granule-bound starch synthase I, UDP-glycogen synthase, \"Granule-bound starch synthase, chloroplast precursor\", glycogen [starch] synthase, Granule-bound glycogen synthase, UDPG-glycogen transglucosylase, uridine diphosphoglucose-glycogen glucosyltransferase, glycogen [starch] synthetase, Granule-bound glycogen [starch] synthase, UDPG-glycogen synthetase, granule bound starch synthase I, granule-bound starch synthase 1, granule-bound starch synthase I"	GRANULE-BOUND STARCH SYNTHASE I	wx-op, Wx-in, Wx-a(Wx), Wx-b(wx), Wx-mq, Wx-hp, Wx1-1(Wx-oz: Hokkai287), Wx-I, Wx-II, Wx-III, Wxa, Web, GBSSIL	6	White and non-translucent endosperm. Brown to the iodine staining. LOC_Os06g04200. EC=2.4.1.242 X58228. A2Y8X2(indica). P0C585. Q0DEV5(japonica). PO:0009089; endosperm. EU871049(Wx-hp:haopi), AB535524(Wx-oz:Hokkai287), AB008794(Wx-b:Taichung65), AB008795(Wx-a:Patpaku). X53694, AF515480, AF515481, AF515482, AF515483, AF031162, AP002542, AF141954, AF141955, X65183, X64108, AB066093, X62134, AF488413. HQ712158-HQ712165. AY136767-AY136784.  AF092443, AF092444. AB281428-AB281462. DQ280600-DQ280604, DQ280606-DQ280609, DQ280611-DQ280623, DQ280625-DQ280632, DQ280634-DQ280637, DQ280640-DQ280646, DQ280648-DQ280671, DQ280672-DQ280675, AB066094, DQ415640. GU727213-GU727295 (O.sativa and other wild rice species).  FJ811412-FJ811452 (Oryza glaberrima, Oryza barthii, Oryza nivara).  EF600036 (O. australiensis), EF600037 (O. rufipogon).  DQ901803-DQ901832 (wild rice species). EF069974-EF070045 (O. sativa and wild rice species). JQ415868-JQ415911 (wild rice species). X86325 (indica, 5' upstream). KJ871342-KJ871345 (indica, includes exon 1 and intron 1). HQ712163.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os06g0133000	LOC_Os06g04200.4, LOC_Os06g04200.3, LOC_Os06g04200.2, LOC_Os06g04200.1	GR:0061010		22.0	GO:0009011 - starch synthase activity, GO:0009536 - plastid, GO:0009415 - response to water, GO:0009651 - response to salt stress, GO:0009501 - amyloplast, GO:0005982 - starch metabolic process, GO:0004373 - glycogen (starch) synthase activity, GO:0009568 - amyloplast starch grain, GO:0019252 - starch biosynthetic process, GO:0048316 - seed development, GO:0033840 - NDP-glucose-starch glucosyltransferase activity, GO:0009845 - seed germination, GO:0009507 - chloroplast	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000237 - water stress trait, TO:0000162 - seed quality, TO:0000196 - amylose content, TO:0000098 - glutinous endosperm	PO:0009010 - seed , PO:0007057 - 0 seed germination stage , PO:0009089 - endosperm , PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
745	DP1	dp1, pa, DP1/PAL1, PAL1	DEPRESSED PALEA 1	depressed palea1, depressed palea 1, depressed palea-1, DEPRESSED PALEA1, PALEALESS1		dp1-1, dp1-2, dp1-3	6	The palea is undergrown and hence the spikelet becomes crescent shape and kernel shape and size also abnormal. [294] PO:0009038; palea ; PO:0009009; embryo ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0136900	LOC_Os06g04540.1	GR:0060238		24.0	GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000484 - seed shape, TO:0000449 - grain yield per plant	PO:0009082 - spikelet floret , PO:0009009 - plant embryo , PO:0009038 - palea 
746	MS1	ms1(sf), ms1(t)*, ms64, ms1, sf	MALE STERILE 1	male sterile1, male sterile 1, male sterile-64, male sterile-1			6	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060538		27.0	GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
747	ENSE1	En Se1, EnSe1(t), EnSe1	ENHANCER FOR PHOTOSENSITIVITY	Enhancer for photosensitivity (Se1), Enhancer for photoperiod-sensitivity (Se1)			6	Enhancer to Se1. Enhancement of photoperiod sensitivity of Se1. Strong sensitivity to photoperiod. PO:0000229; floral meristem ; PO:0006318; floret (sensu Poaceae). GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Heading date			GR:0060294		28.0	GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity, TO:0000344 - days to flower	PO:0000229 - flower meristem , PO:0009082 - spikelet floret 
748	PGD2	Pgd2	PHOSPHOGLUCONATE DEHYDROGENASE 2	Phosphogluconate dehydrogenase2, Phosphogluconate dehydrogenase 2, Phosphogluconate dehydrogenase-2	PHOSPHOGLUCONATE DEHYDROGENASE 2	Pgd2-1, Pgd2-2	6	Dimer. P(PAGE-TC, ST-C).	 Biochemical character			GR:0060601		29.0	GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity		
749	V3	v3, RNRL1, rnrl1, RNR1, RNRL	VIRESCENT 3	virescent3, virescent 3, virescent-3, ribonucleotide reductase large subunit 1, RIBONUCLEOTIDE REDUCTASE 1	RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1		6	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. EU602344. LOC_Os06g07210. APC regulator. APC regulatory subunit.	 Coloration - Chlorophyll	Os06g0168600	LOC_Os06g07210.1	GR:0060982		30.0	GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
750	GA1	ga1	GAMETOPHYTE GENE 1	gametophyte gene1, gametophyte gene 1, gametophyte gene-1			6		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060343		36.0	GO:0019953 - sexual reproduction		
752	C	C, Cp, OsC1, Os-C1, OsMyb6, Myb6	CHROMOGEN FOR ANTHOCYANIN	Chromogen for anthocyanin, Chromogen, Rice C1 anthocyanin regulatory gene, myb transcription factor 6, transcription factor MYB6, Oryza saliva C1, rice homolog of maize C1		C-Bs, C-B, C-Bp, C-Bt, C-Br, C-Bd, C-Bk, C-Bc, C-Bm	6	Produce the precursor substance of pigment (chromogen) such as flabon and catechin. Complementary with A. Os-C1 is a candidate for the C. PO:0020104; leaf sheath ; PO:0006033; paleal apiculus ; PO:0009037; lemma ; PO:0009010; seed ; PO:0006032; awn ; PO:0005005; shoot internode ; PO:0009038; palea ; PO:0006012; leaf collar ; PO:0009025; leaf. R2R3-MYB. Y15219. AB111867-AB111875:Oryza sativa C1, AB111876-AB111883:Oryza rufipogon C1, AB111884:Oryza glaberrima C1, AB111884:Oryza glumipatula C1. a Colorless1/Purple leaf (C1/Pl) like regulatory gene. HQ379701-HQ379705. LOC_Os06g10350. metabolite: Cyanidin 3-O-glucoside.	 Reproductive organ - Inflorescence,  Coloration - Anthocyanin,  Seed - Morphological traits,  Other	Os06g0205100	LOC_Os06g10350.1	GR:0061106		44.0	GO:0009812 - flavonoid metabolic process, GO:0009718 - anthocyanin biosynthetic process, GO:0003677 - DNA binding, GO:0031540 - regulation of anthocyanin biosynthetic process	TO:0000400 - sterile lemma color, TO:0000364 - leaf collar color, TO:0000326 - leaf color, TO:0000426 - internode color, TO:0000367 - basal leaf sheath color, TO:0000140 - apiculus color, TO:0000141 - awn color, TO:0000190 - seed coat color, TO:0000071 - anthocyanin content, TO:0000264 - lemma and palea color	PO:0007632 - seed maturation stage , PO:0020104 - leaf sheath , PO:0009038 - palea , PO:0005005 - shoot internode , PO:0009025 - vascular leaf , PO:0009010 - seed , PO:0006012 - leaf collar , PO:0006032 - lemma awn , PO:0006033 - paleal apiculus , PO:0009037 - lemma 
753	S5	S5-3, S5-4	HYBRID STERILITY 5	Hybrid sterility5, Hybrid sterility 5, Hybrid sterility-5		S5-n, S5-j, S5-i, S5-p, S5i, S5j, S5n	6	wide compatibility. EU889293 (S5-n), EU889294 (S5-j), EU889295 (S5-i). PO:0006465; integument (sensu Poaceae) ; PO:0006464; megaspore (sensu Poaceae) ; PO:0006462; nucellus (sensu Poaceae) ; PO:0006457; ovule (sensu Poaceae) ; PO:0006015; female archesporial cell ; PO:0006463; megasporocyte (sensu Poaceae) ; PO:0009046; flower. GRO:0007019; 4.02-embryo sac development. A killer-protector system at the S5 locus encoded by three tightly linked genes [Open Reading Frame 3 (ORF3) to ORF5] regulates fertility in indica-japonica hybrids (Yang et al. 2012). S5-4: JX138502, JX138503, JX138504, JX138505, S5-3: JX138498, JX138499, JX138500, JX138501. HQ846206 to HQ846327 (from O.sativa, O. rufipogon and O. nirvara), JF298922 (from O. barthii). KF892971-KF893059.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os06g0213100	LOC_Os06g11010.1	GR:0060812		49.0	GO:0004190 - aspartic-type endopeptidase activity, GO:0005618 - cell wall, GO:0005739 - mitochondrion, GO:0009554 - megasporogenesis, GO:0005737 - cytoplasm, GO:0009553 - embryo sac development, GO:0007275 - multicellular organismal development, GO:0006508 - proteolysis	TO:0000416 - embryosac abortion, TO:0000180 - spikelet fertility, TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0006015 - female archesporial cell , PO:0020003 - plant ovule , PO:0020020 - nucellus , PO:0020021 - integument , PO:0009046 - flower , PO:0020019 - megaspore , PO:0000431 - megasporocyte 
754	AMP3	Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1	AMINOPEPTIDASE 3	Aminopeptidase3, Aminopeptidase 3, Aminopeptidase-3	AMINOPEPTIDASE 3	Amp3-0, Amp3-1, Amp3-2, Amp3-3, Amp3-4, Amp3-5, Amp3-8	6	P(ST-H). 3 bands appear in L & C(ST-H).	 Biochemical character			GR:0060038		53.0	GO:0004177 - aminopeptidase activity		
755	EST2	Est2, Est_2	ESTERASE 2	Esterase2, Esterase 2, Esterase-2	ESTERASE 2	Est2-0, Est2-1 (Est2-S), Est2-2 (Est2-F)	6	Monomer. alpha- and beta-NAc-specific brown band. P(PAGE-TC, PAGE-TBE, ST-H), L(AG, ST-H), C(ST-H). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060306		47.0	GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016787 - hydrolase activity		
756	BL3	bl3	BROWN LEAF SPOT 3	brown leaf spot3, brown leaf spot 3, brown leaf spot-3			6	Brown spots appear after panicle emergence, first on the leaves and then by maturity extend into the surface of glumes. [499] PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060084		55.0	GO:0015996 - chlorophyll catabolic process	TO:0000221 - glume color, TO:0000069 - variegated leaf, TO:0000326 - leaf color, TO:0000063 - mimic response	PO:0009025 - vascular leaf , PO:0009088 - seed coat 
757	ALK	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a	ALKALI DEGENERATION	"alkali degeneration, ALKALI DEGENERATION, \"Soluble starch synthase 2-3, chloroplast precursor\", \"Soluble starch synthase 2-3, chloroplast\", \"Soluble starch synthase 2-3, chloroplastic/amyloplastic\", Soluble starch synthase II-3, Starch synthase IIa, soluble starch synthase IIa, Starch synthase-IIa, Starch synthase IIa"	SOLUBLE STARCH SYNTHASE 2-3, CHLOROPLAST	SSII-3-I, SSII-3-II, ss2a	6	This gene causes the disintegration of endosperm starch granules in alkali solution. This gene is located on chromosome 6 flanked by RFLP markers R2147 and C1478 and to the same location with gel(t), acl(t) and SSIIa. This trait is used for identification. EC=2.4.1.21 P0C586(indica). Q0DDE3(japonica). AY423717, AF419099. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.  HQ712150, HQ712151, HQ712152, HQ712153, HQ712154, HQ7121525, HQ712156, HQ712157.  HQ679416-HQ679573 (O. sativa and other wild rice species).	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os06g0229800	LOC_Os06g12450.1	GR:0060034,GR:0061112		56.0	GO:0009501 - amyloplast, GO:0009011 - starch synthase activity, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0019252 - starch biosynthetic process	TO:0000488 - seed composition based quality trait, TO:0000134 - alkali digestion	PO:0009089 - endosperm 
758	ST1	st1(ws1), ws1, st1, RNRS1, rnrs1, RNRS, SDL/RNRS1, SDL	STRIPE 1	stripe1, stripe 1, stripe-1, ribonucleotide reductase small subunit 1, stripe and drooping leaf	RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 1	sdl	6	LOC_Os06g14620. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. EU602345. homologous to Arabidopsis TSO2. GO:0099402: plant organ development. GO:0090391: granum assembly.	 Coloration - Chlorophyll	Os06g0257450	LOC_Os06g14620.1	GR:0060928		65.0	GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process, GO:0033305 - chlorophyll a biosynthetic process, GO:0009658 - chloroplast organization	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf, TO:0000326 - leaf color	PO:0009025 - vascular leaf 
759	PGI2	Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b	PHOSPHOGLUCOISOMERASE 2	Phosphoglucoisomerase2, Phosphoglucoisomerase 2, Phosphoglucoisomerase-2, Glucose-6-phosphate isomerase, cytosolic B, Phosphoglucose isomerase B, Phosphohexose isomerase B	PHOSPHOGLUCOISOMERASE 2	Pgi2-1, Pgi2-2, Pgi2-3, Pgi2-4	6	Dimer. P(ST-H,PAGE-TC),L&C(ST-H). Interlocus hybrid bands occur. Differential allele frequencies between Indica and Japonica types. Thermomorphs are known. EC=5.3.1.9 P42863. D45218.	 Biochemical character	Os06g0256500	LOC_Os06g14510.3, LOC_Os06g14510.2, LOC_Os06g14510.1	GR:0060603		67.0	GO:0005829 - cytosol, GO:0006094 - gluconeogenesis, GO:0006096 - glycolysis, GO:0004347 - glucose-6-phosphate isomerase activity		
760	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21	PHOTOSENSITIVITY 1	Photosensitivity1, Photosensitivity 1, Photoperiod sensitivity 1, Heading date, Photoperiod-sensitivity-1, HEADING DATE 1, Arabidopsis CONSTANS(CO) gene ortholog, ortholog of Arabidopsis CONSTANS, B-box-containing protein 18, CCT domain-containing gene 21, CCT (CO, CO-LIKE and TOC1) domain protein 21, CCT domain protein 21	HD1 PROTEIN 	Se1-e, Se1-n, Se1-t, Se1-s, Se1-u, hd1, Hd1EH, Hd1NB, Hd1Vol	6	Earliness gene through controlling photoperiod response. Q9FDX8. AB041837, AB041838, AB041839, AB041840, AB041841, AB041842, AP003044. AB375859.  JN594404-JN594499 (O.sativa and other wild rice species). AB474759-AB474785 (O.sativa and other wild rice species). JN402205-JN402280 (O.sativa and other wild rice species). PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. FJ581043-FJ581047, GQ407104-GQ407107 (indica and other wild rice species). AP005813, AP003044. LOC_Os06g16370. a rice ortholog of Arabidopsis gene for circadian clock component. KM063441-KM063573 (134 sequences out of these, O.sativa and other wild rice species).an Arabidopsis CONSTANS ortholog.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os06g0275000	LOC_Os06g16370.1	GR:0060860		67.0	GO:0006351 - transcription, DNA-dependent, GO:0009908 - flower development, GO:0030154 - cell differentiation, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0007623 - circadian rhythm, GO:0008270 - zinc ion binding, GO:0009648 - photoperiodism, GO:0009909 - regulation of flower development, GO:0010229 - inflorescence development, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0048571 - long-day photoperiodism, GO:0048572 - short-day photoperiodism, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0006032 - panicle size, TO:0002759 - grain number, TO:0000137 - days to heading, TO:0000469 - days to maturity, TO:0000229 - photoperiod sensitivity, TO:0000371 - yield trait, TO:0000050 - inflorescence branching, TO:0000448 - filled grain percentage	PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009082 - spikelet floret , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009013 - portion of meristem tissue , PO:0009010 - seed 
761	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2	PYRICULARIA ORYZAE RESISTANCE Z	Pyricularia oryzae resistance-z, Magnaporthe grisea resistance-z, Blast resistance z, Pyricularia oryzae resistance-2, Magnaporthe grisea resistance-2, Blast resistance 2		Pi z-t (Pi-zt, Piz-t, Pi-z(t)), Pi z-5 (Pi-z5, Piz-5), Pi2-1	6	Resistant to rice blast disease. Variety 'Fukunishiki' and its parental cultivar Zenith have this gene. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. DQ352040(Piz-t), DQ352453(Nbs4-Pi=Pi2), Pi2-1 (Tianjingyeshengdao). The Pi2 gene encodes a protein with a nucleotide-binding site and leucine-rich repeat (LRR) domain. Pi2(t) was renamed Pi-z5. Because Pi-2(t) was allelic to Pi-z, Pi-z is used for showing the locus and the first letter of the donor variety 5173 is given as a superscript as Pi-z5 (Kinoshita et al. 1994). The resistance gene in Toride 1 was allelic to Pi-z and designated as Pi-zt (Yokoo & Kiyosawa 1970). Piz-t gene is a Pi2 allele in the rice cultivar Toride 1 (Zhou et al. 2006). GQ280265-GQ280269 (the genomic sequences of the Pi2/9 locus in four wild Oryza species: O. nivara, O. punctata, O. officinalis and O. minuta)	 Tolerance and resistance - Disease resistance	Os06g0286700	LOC_Os06g17900.1	GR:0060628		69.0	GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000522 - stomatal conductance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
762	S6		HYBRID STERILITY 6	Hybrid sterility6, Hybrid sterility 6, Hybrid sterility-6		S6-a, S6a, S6n	6	Sporogametophytic interaction. Semi-sterility in heterozygotes S6/S6-a  due to elimination of gametes with S6-a. [RGN6:6] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060813		74.0	GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009046 - flower 
763	D9	d9, dwf8	DWARF CHINESE	Chinese dwarf, dwarf-9			6	Semi-dwarf with normal grains. PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060191		76.0	GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
764	RCN1	rcn1	REDUCED CULM NUMBER 1	reduced culm number1, reduced culm number-1			6	Number of panicles is extremely reduced, and plant height is about 50% of that of the original variety, A-5 Akamuro.  The character reverts to normal under high temperature. [256] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060726		77.0	GO:0009266 - response to temperature stimulus, GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000346 - tiller number, TO:0000432 - temperature response trait, TO:0000576 - stem length, TO:0000152 - panicle number, TO:0000207 - plant height	PO:0009047 - stem 
765	GF1	gf1	GOLD FURROWS OF HULL 1	gold furrows of hull1, gold furrows of hull 1, gold furrows of hull-1			6	PO:0009038; palea ; PO:0009088; seed coat ; PO:0009037; lemma. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0060363		80.0	GO:0009812 - flavonoid metabolic process	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color, TO:0000484 - seed shape	PO:0009037 - lemma , PO:0009038 - palea , PO:0009088 - seed coat 
766	CHL4	chl4	CHLORINA 4	chlorina4, chlorina 4, chlorina-4			6	PO:0009006; shoot ; PO:0009025; leaf ; PO:0006343; axillary shoot. GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0060121		82.0	GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000496 - carotenoid content, TO:0000296 - vegetative vigor, TO:0000346 - tiller number, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0006343 - axillary shoot system , PO:0009006 - shoot system , PO:0009025 - vascular leaf 
767	BL2	bl2(blm), blm, bl2	BROWN LEAF SPOT 2	brown leaf spot2, brown leaf spot 2, brown leaf spot-2			6	Black spots appear on the leaves after the middle stage of growth and spread along the growth of plant.[301] PO:0009047; stem ; PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060083		83.0	GO:0015996 - chlorophyll catabolic process	TO:0000326 - leaf color, TO:0000069 - variegated leaf, TO:0000221 - glume color, TO:0000063 - mimic response, TO:0000056 - stem color	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009088 - seed coat 
768	FS1	fs1	FINE STRIPE 1	fine stripe1, fine stripe 1, fine stripe-1			6	Minute white flecks or fine white stripes at the tip and margin of leaf blade in young plants.  The expression of fs is dependent upon the environmental conditions, showing no difference from fs+ under higher temperature. [298] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060336		95.0	GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
769	CL	Cl	CLUSTERED SPIKELETS	Clustered spikelets			6	Internode of upper half of rachilla being shortened, spikelets appear grown together from tha same place. [301] PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060141		96.0	GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000089 - panicle type, TO:0000180 - spikelet fertility	PO:0009049 - inflorescence 
770	MS9	ms9	MALE STERILE 9	male sterile9, male sterile 9, male sterile-9			6	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060546		100.0	GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
771	HLA	Hla, Hl1	HAIRY LEAF-A	Hairy leaf-a, Hairy leaf-1			6	Complementary with Hlb. Thick and long hairs on leaves. Pleiotripic effects on hair length of panicle branches but no remarkable effect in pubescence of floral glumes. [299] PO:0020039; leaf lamina.	 Vegetative organ - Leaf			GR:0060447		118.0	GO:0030154 - cell differentiation	TO:0000055 - leaf lamina pubescence	PO:0020039 - leaf lamina 
772	UR1	Ur1	UNDULATE RACHIS 1	Undulate rachis1, Undulate rachis 1, Undulate rachis-1			6	Incomplete dominant gene produces undulation of primary and secondary rachis branches.This gene increases spikelet number per panicle owing to increase of secondary branches.	 Vegetative organ - Shoot apical meristem(SAM)			GR:0060978		125.0	GO:0007275 - multicellular organismal development	TO:0000342 - panicle axis angle	
773	D58	d58, dwf39	DWARF SMALL GRAINED	small grained dwarf, dwarf-58			6	PO:0009047; stem.	 Vegetative organ - Culm			GR:0060223		139.0	GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000576 - stem length, TO:0000391 - seed size	PO:0009047 - stem 
774	BAMY1	betaAmy1, BetaAmy1, Amy10	BETA AMYLASE 1	Beta Amylase isozyme1, Beta Amylase isozyme 1, Beta Amylase 1, Beta amylase isozyme-1, Amylase(Beta)-10, Amylase-10	BETA AMYLASE 1 	beta-Amy1-0, beta-Amy1-1, beta-Amy1-2, beta-Amy1-3	7	beta-amylase activity in germinating seeds.S(PAGE).	 Biochemical character			GR:0060076			GO:0016161 - beta-amylase activity, GO:0004556 - alpha-amylase activity		
775	CALB	CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2	CALMODULIN B	Calmodulin-2, Calmodulin-b, Calmodulin-1, Calmodulin 1-2	CALMODULIN B		7	Calmodulin. Q0JNS6 (japonica), A2WN93 (indica). D15079.	 Biochemical character	Os07g0687200	LOC_Os07g48780.2, LOC_Os07g48780.1	GR:0060108			GO:0005886 - plasma membrane, GO:0010099 - regulation of photomorphogenesis, GO:0005509 - calcium ion binding, GO:0005516 - calmodulin binding, GO:0005773 - vacuole, GO:0009846 - pollen germination, GO:0019722 - calcium-mediated signaling		
776	D60	d60 (sd(t)), sd(t), dwf41, d60	DWARF HOKURIKU 100	dwarf (Hokuriku 100), dwarf-60			7	30% shorter in plant height compared with the original variety. Lodging tolerance. PO:0009047; stem ; PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060225			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000576 - stem length, TO:0000145 - internode length, TO:0000069 - variegated leaf	PO:0005005 - shoot internode , PO:0009047 - stem 
777	D7	d7, dwf7	DWARF HEIEIDAIKOKU OR CLEISTOGAMOUS	heieidaikoku or cleistogamous dwarf, dwarf-7			7	"Similar to \"Daikoku\", but slightly taller height and cleistogamous glumes.[10003] PO:0009047; stem ; PO:0009039; glume ; PO:0009049; inflorescence ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae) ; PO:0009038; palea. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage."	 Vegetative organ - Culm			GR:0060190			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000576 - stem length, TO:0000089 - panicle type, TO:0000499 - flower anatomy and morphology trait, TO:0000474 - glume opening, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009037 - lemma , PO:0009038 - palea , PO:0009039 - glume , PO:0009047 - stem , PO:0009049 - inflorescence 
778	DS3	ds3(t), ds3	DESYNAPSIS 3	desynapsis3, desynapsis 3, desynapsis-3			7		 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060251			GO:0007135 - meiosis II		
779	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b	HEADING DATE 1	Heading date1, Heading date 1, Heading date-1, modifier for Ef1, Heading time 1		e1	7	modifier for Ef1.  (m Ef1-a, m Ef1-b) PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060275		57.0	GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading, TO:0000469 - days to maturity	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
780	ELF2	elf2*, elf2	ELONGATION FACTOR 1 BETA CHAIN 2	elongation factor 1 beta chain2, elongation factor 1 beta chain 2, elongation factor 1 beta chain-2	ELONGATION FACTOR 1 BETA CHAIN 2		7		 Biochemical character			GR:0060290			GO:0006412 - translation, GO:0003746 - translation elongation factor activity		
781	EST1	Est1	ESTERASE 1	Esterase1, Esterase 1, Esterase-1	ESTERASE 1	Est1-0, Est1-1 (Est1-S)	7	Monomer. beta-NAc-specific red band. P(PAGE-TBE, ST-H), L(AG).	 Biochemical character			GR:0060305			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
782	EST7	Est7	ESTERASE 7	Esterase7, Esterase 7, Esterase-7	ESTERASE 7	Est7-0, Est7-1.	7	P(ST).	 Biochemical character			GR:0060311			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
783	EST9	Est9 (Est c1), Est8, Estcl, Est c1, Est_9	ESTERASE 9	Esterase9, Esterase 9, Esterase-9	ESTERASE 9	Est9-1, Est9-2.	7	Dimer. Cathodal side, beta-NAc-specific red band. P(ST-H).	 Biochemical character			GR:0060313		99.0	GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
784	GA11	ga11	GAMETOPHYTE GENE 11	gametophyte gene11, gametophyte gene 11, gametophyte gene-11		ga11-a	7	Distorted segregation due to selective fertiization caused by ga11 and ga11-a.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060353		124.0	GO:0019953 - sexual reproduction		
786	HWD2	hwd2	HYBRID WEAKNESS D2	hybrid weakness d2, hybrid weakness-d2			7	Weakness occurs in F2 from varietal crosses having complementary gene hwd1. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060462			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000355 - heterosis, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
787	LP1	lp1	LONG PALEA 1	long palea1, long palea 1, long palea-1			7	duplicate gene with dp2. The palea outgrows the lemma.[543] PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060510			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea 
788	MAL1	Mal1, Mal I, Mal-I, Mal-1	MALATE DEHYDROGENASE(NADP) 1	Malate dehydrogenase(NADP)1, NADP-malic enzyme 1, NADP-dependent malate dehydrogenase 1, malic enzyme-1	MALATE DEHYDROGENASE(NADP) 1	Mal1-1, Mal1-2	1	P(PAGE-TC, ST-C). Mal differs from Mdh in that it needs NADP as coenzyme in the substrate, while Mdh needs NAD. Mal-1 is active in the green part of the plumule. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060515			GO:0016615 - malate dehydrogenase activity, GO:0030060 - L-malate dehydrogenase activity		
789	MAL2	Mal2	MALATE DEHYDROGENASE(NADP) 2	Malate dehydrogenase(NADP)2	MALATE DEHYDROGENASE(NADP) 2	Mal2-1, Mal2-2	7	Monomers. The band migrates faster than that of Mal1. Active in the green part of the plumule. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060516			GO:0016615 - malate dehydrogenase activity		
790	MS8	ms8	MALE STERILE 8	male sterile8, male sterile 8, male sterile-8			7	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060545			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
791	PI17	Pi17(t), Pi17, Pi-17(t)	PYRICULARIA ORYZAE RESISTANCE 17	Pyricularia oryzae resistance 17, Magnaporthe grisea resistance-17, Blast resistance 17			7	Resistant  to several races of Pyricularia grisea. [RGN13:18]. PO:0009025; lea. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Map position (94.0-104.0 cM). Original line is DJ123 (Indica).	 Tolerance and resistance - Disease resistance			GR:0060646			GO:0009620 - response to fungus	TO:0000492 - leaf shape, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
792	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)	PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 1	photoperiod sensitive genic male sterile1, photoperiod sensitive genic male sterile 1, photoperiod-sensitive male sterility-1			7	dupliclate gene. Male sterile under longday conditions and fertile under short day conditions. pgms. PO:0009066; anther ; PO:0009046; flower. The LOC_Os07g12130 locus is the most likely candidate gene for pms1(t).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060681			GO:0007275 - multicellular organismal development, GO:0009648 - photoperiodism, GO:0009650 - UV protection	TO:0000009 - genic male sterility-photoperiod sensitive	PO:0009046 - flower , PO:0009066 - anther 
793	POX3	Pox3	PEROXIDASE 3	Peroxidase3, Peroxidase 3, Peroxidase-3	PEROXIDASE 3	Pox3-1 (Pox3-3C), Pox3-2 (Pox3-5C)	7	P(ST).	 Biochemical character			GR:0060687			GO:0004601 - peroxidase activity		
794	POX4	Pox4	PEROXIDASE 4	Peroxidase4, Peroxidase 4, Peroxidase-4	PEROXIDASE 4	Pox4-1, Pox4-2	7	P(ST).	 Biochemical character			GR:0060688			GO:0004601 - peroxidase activity		
795	PRO4	Pro4*, Pro4	PROLAMIN 4	Prolamin4, Prolamin 4, Prolamin-4	PROLAMIN 4		7	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060695			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
796	R5S2	R5s2*, R5s2	5S RIBOSOMAL DNA 2	5S ribosomal DNA2, 5S ribosomal DNA 2, 5S ribosomal DNA-2			7		 Biochemical character			GR:0060713			GO:0000182 - rDNA binding, GO:0005840 - ribosome, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
797	RF4	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4	RESTORATION OF FERTILITY 4	Pollen fertility restoration1, Pollen fertility restoration 1, Fertility restoration1 for 'WA' cytoplasm, Pollen fertility restoration-4			7	duplicate.  Fertility restoration (WA cytoplasm), Fertility restoration for WA cytoplasm. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060743			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
798	RL6	rl6(t), cul13	ROLLED LEAF 6	rolled leaf6, rolled leaf 6, rolled leaf-6, curl leaf-13			7	PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060769			GO:0030154 - cell differentiation	TO:0000492 - leaf shape, TO:0000085 - leaf rolling, TO:0000370 - leaf width	PO:0009025 - vascular leaf 
799	S7	S7	HYBRID STERILITY 7	Hybrid sterility7, Hybrid sterility 7, Hybrid sterility-7		S7-n, S7-kn, S7-ai, S7-cp, S7cp, S7i, S7ai, S7n	7	Semi-sterility is expressed as an allelic interactin such as S7-ai/S7-cp. [RGN9:3] PO:0009046; flower. LOC_Os07g27180. a tetratricopeptide repeat domain containing protein.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os07g0455100	LOC_Os07g27180.1	GR:0060814		74.0	GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
800	S9		HYBRID STERILITY 9	Hybrid sterility9, Hybrid sterility 9, Hybrid sterility-9		S9-i, S9-kn	7	Semi-sterility is expressed as an allelic interactin such as S9-i/S9-kn. [RGN10:9] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060816			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009046 - flower 
801	SE2	se2	PHOTOSENSITIVITY 2	photosensitivity2, photosensitivity 2, photoperiod-sensitivity-2			7	PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060861			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
802	SE8	Se8(t)*	PHOTOSENSITIVITY 8	Photosensitivity8, Photosensitivity 8, Photoperiod-sensitivity-8			7	PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060867			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000469 - days to maturity, TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
803	SPL9	spl9	SPOTTED LEAF 9	spotted leaf9, spotted leaf 9, spotted leaf-9			7	Small blackish brown spots on leaves and culms but not thick, appear only after heading or flowering time.  Induced by irradiation on Norin 8. [137] PO:0009047; stem ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060910			GO:0006952 - defense response	TO:0000069 - variegated leaf, TO:0000063 - mimic response	PO:0009025 - vascular leaf , PO:0009047 - stem 
804	ST8	st8	STRIPE 8	stripe8, stripe 8, stripe-8			7	This mutant exhibits white stripes on olderleaves at the seedling stage. PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060935			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
805	UNB	Unb, Un2	UNEVEN GRAIN B	Uneven grain B, Uneven grain-b, Uneven grain-2			7	Complimentary with Una. The tip of the palea side of the kernel out-grows the tip of the lemma side. PO:0009038; palea ; PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060977			GO:0007275 - multicellular organismal development	TO:0000287 - brown rice shape	PO:0009010 - seed , PO:0009038 - palea 
806	WP1	wp1	WHITE PANICLE 1	white panicle1, white panicle 1, white panicle-1			7	The panicles of this recessive mutant are white instead of green from the time of exsertion to early grain filling.  Grains are normal straw colored at maturity. [399] PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0061002		32.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000077 - shoot anatomy and morphology trait, TO:0000495 - chlorophyll content, TO:0000264 - lemma and palea color	PO:0009049 - inflorescence 
807	WBPH1	Wph1(Wbph), Wbph1, Wph1	WHITEBACKED PLANTHOPPER RESISTANCE 1	Whitebacked planthopper resistance1, Whitebacked planthopper resistance 1, Whitebacked planthopper resistance-1			7		 Tolerance and resistance - Insect resistance			GR:0061004			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
808	XA K*	xa k*, XAK, xak*, xak	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE K	Xanthomonas oryzae pv. oryzae resistance-k, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE K, Xanthomonas campestris pv. oryzae resistance-k			7		 Tolerance and resistance - Disease resistance			GR:0061036			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
809	Z10	z10	ZEBRA 10	zebra10, zebra 10, zebra-10			7	This mutant shows irregular yellow bands on leaf blades until 40 days after germination. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061056			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
810	D6	d6(d34), d34, dwf6	DWARF EBISUMOCHI DWARF OR TANKANSHIRAZASA	ebisumochi dwarf or tankanshirazasa dwarf, dwarf-6			7	Dwarf. Sinuous panicle neck and leaves with lopped blades. The second and further internodes are extremely short. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060189			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000492 - leaf shape, TO:0000089 - panicle type	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
811	G1	g1 (lng), lng, g1, ELE, OsG1, G1/ELE	LONG STERILE LEMMAS 1	long sterile lemmas1, long sterile lemmas 1, long sterile lemmas-1, elongated empty glume, long sterile lemma/glume1		g1-1, g1-2, g1-3, g1-4, ele, g1, g1-ele, g1-6, osg1-1, osg1-2, osg1-3, osg1-4, osg1-5, osg1-6	7	Steril lemmas grow long as same as lemma. Q8GVZ6. PO:0009039; glume ; PO:0009038; palea ; PO:0009037; lemma. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.G1 is a member of a plant-specific gene family that encodes proteins with ALOG domain. AB512480(OsG1), AB512486(OgG1-1,W0613), AB512487(OgG1-2, W0613), AB512488(OgG1-1, W1194), AB512489(OgG1-2, W1194). FJ502130. DUF640 domain protein. TO:0000869: glume anatomy and morphology trait. GO:0090698: post-embryonic plant morphogenesis. PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0139300	LOC_Os07g04670.1	GR:0060340		6.0	GO:0009908 - flower development, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009299 - mRNA transcription, GO:0009416 - response to light stimulus, GO:0048449 - floral organ formation, GO:0009909 - regulation of flower development	TO:0000240 - sterile lemma length, TO:0002726 - sterile lemma shape, TO:0000622 - flower development trait, TO:0020033 - glume length, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea , PO:0009039 - glume , PO:0007615 - flower development stage 
812	SPL5	spl5(bl6,spl5-1), bl6, spl5, SF3b3	SPOTTED LEAF 5	spotted leaf5, spotted leaf 5, spotted leaf-5, splicing factor 3b subunit 3		spl5-2, spl5	7	Relatively small reddish brown spots scattering over the whole surface of leaves.  They appear from tillering stage to heading time. The phenotypes of spl3, spl5 and spl7 are similar, being difficult to distingush each other. Hypersensitivity to pathogens brings in resistance to rice blast and bacterial blight. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage. KC128660.	 Tolerance and resistance - Lesion mimic	Os07g0203700	LOC_Os07g10390.1	GR:0060906		31.0	GO:0006952 - defense response, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding	TO:0000069 - variegated leaf, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
813	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C	BROWN PERICARP AND SEED COAT	Brown pericarp and seed coat, basic/helix-loop-helix 17, basic helix loop helix 17, GLABRA3C, GLABRA 3C	bHLH TRANSCRIPTION FACTOR 17	Rc-s, Rc-g, rc, rc-g1, SD7-1D, SD7-1d	7	Responsible for the production of the pigment in the so-called brown rice, which has dark-brown irregular speckles on a reddish brown background. [298] Basic Helix-Loop-Helix protein, bHLH TRANSCRIPTION FACTOR. LOC_Os07g11020. AB247503, AB250059.  DQ204735, DQ204736 (Plant Cell 18 (2), 283-294 (2006)). PO:0009088; seed coat ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. DQ885795-DQ885823 and DQ902346-DQ902352. GU261543-GU261673 (Oryza sativa and wild rice species). HM749735-HM749743 (Oryza barthii and Oryza glaberrima). JF303048-JF303056, JF303060-JF303062. O. rufipogon and O. glaberrima: JF303057-JF303059. LOC_Os07g11020. a homologue of Arabidopsis transcription factor GL3.	 Coloration - Others,  Seed - Physiological traits - Dormancy	Os07g0211500	LOC_Os07g11020.1	GR:0060724		52.0	GO:0009812 - flavonoid metabolic process, GO:0010023 - proanthocyanidin biosynthetic process, GO:0046283 - anthocyanin metabolic process	TO:0000487 - endosperm color, TO:0000707 - pericarp color, TO:0000190 - seed coat color	PO:0009088 - seed coat , PO:0009089 - endosperm 
814	V11	v11	VIRESCENT 11	virescent11, virescent 11, virescent-11			7	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060990		53.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
815	Z6	z6	ZEBRA 6	zebra6, zebra 6, zebra-6			7	Irregularly spaced yellowish crossbands are kept on leaf blade and sheath through growing period. PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0061052		55.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
816	RFS	rfs, cul7, OsRFS	ROLLED FINE STRIPED LEAF	rolled fine striped leaf, curl leaf-7, Rolled Fine Striped		rfs-1, rfs-2	7	LOC_Os07g31450. a CHR4/Mi-2-Like Chromatin Remodeling Factor. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. GO:0072593: reactive oxygen species metabolic process. GO:1904821: chloroplast disassembly. TO:0006060: leaf chlorosis. GO:0036123: histone H3-K9 dimethylation.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os07g0497000		GR:0060753		66.0	GO:0009658 - chloroplast organization, GO:0007275 - multicellular organismal development, GO:0009555 - pollen development, GO:0048364 - root development, GO:0016570 - histone modification, GO:0015995 - chlorophyll biosynthetic process, GO:0005524 - ATP binding, GO:0048366 - leaf development, GO:0040029 - regulation of gene expression, epigenetic	TO:0000326 - leaf color, TO:0000085 - leaf rolling, TO:0000605 - hydrogen peroxide content, TO:0000492 - leaf shape, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000656 - root development trait, TO:0000069 - variegated leaf, TO:0002715 - chloroplast development trait	PO:0005020 - vascular bundle , PO:0004006 - mesophyll cell , PO:0009015 - portion of vascular tissue , PO:0025424 - vascular tissue development stage , PO:0007520 - root development stage , PO:0001007 - pollen development stage , PO:0001050 - leaf development stage , PO:0009025 - vascular leaf 
817	SLG	slg, Rurm1, Urm1	SLENDER GLUME	slender glume, slender-glume, rice ubiquitin-related modifier-1, ubiquitin-related modifier-1		Rurm1m, Rurm1+	7	LOC_Os07g28280. mutator.  Slender glume frequently mutates toward wild type and frequently induces mutations in other loci. [RGN11:9] PO:0009047; stem ; PO:0009039; glume ; PO:0020142; stem internode. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. AB072932, AB072933. D23858, C74027, AU101270, AU164540. Q0D6M1. slg is the same locus as Rurm1, and the reversion of slender glume to its wild type results from the precise excision of mPing from the Rurm1m allele (Nakazaki et al. 2003).	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0466300	LOC_Os07g28280.1	GR:0060896		72.0	GO:0034227 - tRNA thio-modification, GO:0009826 - unidimensional cell growth, GO:0005737 - cytoplasm	TO:0000304 - seed thickness, TO:0000149 - seed width, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009039 - glume , PO:0009047 - stem , PO:0020142 - stem internode 
818	GE1	ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES	GIANT EMBRYO 1	giant embryo1, giant embryo 1, giant embryo, big grain2, Cytochrome P450 78A13, GIANT EMBRYO, super-giant embryo	CYTOCHROME P450 78A13 	ge1-1, ge1-2, ge1-3, ge1-4, ge1-5, ge1-6, ge1-s, bg2-D, ge, ge-1, ge-2, ge-3, ge-4, ge-5, ge-6, ge-7, ge-8, ge-9, ge-10, ge, ges	7	Induced by chemical mutagen treatment. Embyro size is 2-3 times as large as that of the original variety [440]. In the mature seed, the endosperm is degenerate and a giant embryo is produced due to the enlarged scutellum [708]. PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. LOC_Os07g41240.  GO:2000014: regulation of endosperm development. AB780362.	 Biochemical character,  Reproductive organ - panicle,  Seed - Morphological traits - Embryo,  Character as QTL - Yield and productivity	Os07g0603700	LOC_Os07g41240.1	GR:0060362		93.0	GO:0010229 - inflorescence development, GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis, GO:0080113 - regulation of seed growth, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009960 - endosperm development, GO:0004497 - monooxygenase activity	TO:0000064 - embryo related trait, TO:0000113 - giant embryo, TO:0000575 - endosperm related trait, TO:0000391 - seed size, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000621 - inflorescence development trait, TO:0000193 - embryo shape	PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0001083 - inflorescence development stage 
819	ESP1	esp1(rsp1), rsp1, esp1	ENDOSPERM STORAGE PROTEIN 1	endosperm storage protein1, endosperm storage protein 1, endosperm storage protein-1	ENDOSPERM STORAGE PROTEIN 1		7	The intensity of 13kD-b polypeptide in seed storage protein is lower than that for the original cultivar. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060301		88.0	GO:0045735 - nutrient reservoir activity	TO:0000107 - endosperm storage protein-1 content, TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
820	AMP4	Amp4	AMINOPEPTIDASE 4	Aminopeptidase4, Aminopeptidase 4, Aminopeptidase-4	AMINOPEPTIDASE 4	Amp4-0, Amp4-1, Amp4-2, Amp4-3, Amp4-4, Amp4-5, Amp4-9	8	Monomers. The allozymes do not have the same concentration or the same activity and heterozygous Amp4 individuals display two bands with the faster one being more intense.P(ST-H).	 Biochemical character			GR:0060039			GO:0004177 - aminopeptidase activity		
822	AN4	An4	AWN 4	Awn4, Awn 4, Awn-4			8	Incomplete dominance for number of awned spikelets per panicle and awn length. PO:0009049; inflorescence ; PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060051			GO:0007275 - multicellular organismal development	TO:0000142 - secondary branching of inflorescence, TO:0000072 - awn length, TO:0000052 - primary branching of inflorescence	PO:0006032 - lemma awn , PO:0009049 - inflorescence 
823	CHL8	chl8	CHLORINA 8	chlorina8, chlorina 8, chlorina-8			8	The mutant exhibits yellowish green leaves from seedling stage to maturity. [172] PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0060125			GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000496 - carotenoid content, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
824	CHL9	chl9	CHLORINA 9	chlorina9, chlorina 9, chlorina-9			8	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060126			GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000496 - carotenoid content	PO:0009025 - vascular leaf 
825	D51	d51(d K8), dwf32, dK8, d51	DWARF KYUSHU 8	dwarf Kyushu8, dwarf Kyushu 8, dwarf Kyushu-8, dwarf-51			8	PO:0009047; stem ; PO:0009049; inflorescence ; PO:0006343; axillary shoot. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060216			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000165 - panicle exsertion, TO:0000346 - tiller number	PO:0006343 - axillary shoot system , PO:0009047 - stem , PO:0009049 - inflorescence 
826	GAX	gax*, gax, ga-x, ga15	GAMETOPHYTE GENE X	gametophyte gene-x, gametophyte gene x, gametophyte gene-15, gametophyte gene 15			8		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060357			GO:0019953 - sexual reproduction		
827	PKC2	pkc2*, pkc2	PROTEIN KINASE C HOMOLOGY 2	protein kinase C homology2, protein kinase C homology 2, protein kinase C homology-2	PROTEIN KINASE C HOMOLOG 2		8		 Biochemical character			GR:0060670			GO:0004712 - protein serine/threonine/tyrosine kinase activity, GO:0004697 - protein kinase C activity		
828	SHR2	shr2, sh2	SHRUNKEN ENDOSPERM 2	shrunken endosperm2, shrunken endosperm 2, shrunken endosperm-2			8	Endosperm is wrinkled. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060892			GO:0009568 - amyloplast starch grain	TO:0000100 - shrunken endosperm, TO:0000266 - chalky endosperm, TO:0000587 - endosperm quality	PO:0009089 - endosperm 
829	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8	SCENTED KERNEL 2	scented kernel2, scented kernel 2, fragrance, betaine-aldehyde dehydrogenase 2, betaine aldehyde dehydrogenase 2, scented kernel-2, betaine aldehyde dehydrogenase-2, Aldehyde dehydrogenase 10A8	BETAINE-ALDEHYDE DEHYDROGENASE 2	badh2-E2, badh2-E7, badh2.1	8	Scent expressed in the tissue of leaf and kernel. It is located at the end of linkage group of chromosome 8, near the RFLP marker RG28. AB096083. EU770319-EU770324. FJ697177-FJ705056. JQ345686-JQ345690. JN599158, JN599159, JN599152, JN599151. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009010; seed.	 Biochemical character,  Seed - Physiological traits - Taste,  Tolerance and resistance - Stress tolerance	Os08g0424500	LOC_Os08g32870.1	GR:0060894			GO:0006950 - response to stress, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0009413 - response to flooding, GO:0008802 - betaine-aldehyde dehydrogenase activity, GO:0009698 - phenylpropanoid metabolic process, GO:0031456 - glycine betaine biosynthetic process, GO:0005777 - peroxisome	TO:0000286 - submergence sensitivity, TO:0000087 - aroma	PO:0000003 - whole plant , PO:0009010 - seed , PO:0009011 - plant structure 
830	TELSM1	Telsm1*, Telsm1	TELOMERES 1	Telomeres1, Telomere 1, Telomere-1			8		 Biochemical character			GR:0060953			GO:0005696 - telomere		
831	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)	THERMOSENSITIVE MALE STERILITY 1	thermosensitive male sterility1, thermosensitive male sterility 1, thermosensitive male sterility-1, male sterile-80			8	Male sterile, as a recessive character, under temperatures higher than 26.5C in the meiosis stage, but male-fertile under lower temperature. (23-25C). PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060955			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000067 - genic male sterility-thermo sensitive	PO:0009046 - flower , PO:0009066 - anther 
832	UR2	ur2	UNDULATE RACHIS 2	undulate rachis2, undulate rachis 2, undulate rachis-2			8		 Vegetative organ - Shoot apical meristem(SAM)			GR:0060979			GO:0007275 - multicellular organismal development	TO:0000342 - panicle axis angle	
833	XA	xa(t)*, Xa(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE	Xanthomonas oryzae pv. oryzae resistance, Xanthomonas campestris pv. oryzae resistance			8	Rice bacterial blight resistance.	 Tolerance and resistance - Disease resistance			GR:0061035			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
834	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 13	Xanthomonas oryzae pv. oryzae resistance 13, Xanthomonas campestris pv. oryzae resistance-13, Xanthomonas oryzae pv. oryzae resistance-13	SUGAR TRANSPORTER SWEET11		8	LOC_Os08g42350. Q6YZF3. DQ421394, DQ421395, DQ421396. Recessive resistant gene to Philippine isolate 6 but susceptible to isolates 1, 2, 3, 4, and 5. [RGN5:5]. a member of the NODULIN3 (N3) gene family.  host disease-susceptibility gene for bacterial blight. MtN3 gene family. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0535200	LOC_Os08g42350.1	GR:0061021			GO:0002237 - response to molecule of bacterial origin, GO:0005886 - plasma membrane, GO:0005515 - protein binding, GO:0006825 - copper ion transport, GO:0006952 - defense response, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0009617 - response to bacterium, GO:0016021 - integral to membrane, GO:0008515 - sucrose transmembrane transporter activity, GO:0010150 - leaf senescence, GO:0015770 - sucrose transport, GO:0034219 - carbohydrate transmembrane transport, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress	TO:0000540 - leaf area, TO:0000371 - yield trait, TO:0000175 - bacterial blight disease resistance, TO:0000060 - aborted uni-nucleate stage, TO:0000180 - spikelet fertility, TO:0000249 - leaf senescence, TO:0006001 - salt tolerance	PO:0020128 - leaf margin , PO:0020137 - leaf apex , PO:0001054 - 4 leaf senescence stage 
835	Z4	z4	ZEBRA 4	zebra4, zebra 4, zebra-4			8	PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0061050			GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development	TO:0000069 - variegated leaf, TO:0000339 - stem thickness, TO:0000495 - chlorophyll content, TO:0000061 - node shattering	PO:0009025 - vascular leaf , PO:0009047 - stem 
836	AMP2	Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2	AMINOPEPTIDASE 2	Aminopeptidase2, Aminopeptidase 2, Aminopeptidase-2	AMINOPEPTIDASE 2	Amp2-0, Amp2-1, Amp2-2, Amp2-3, Amp2-4, Amp2-5, Amp2-7	8	Monomer. S(PAGE-TC), P(ST-H). 3 bands appear in L & C(ST-H). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060037			GO:0004177 - aminopeptidase activity		
837	PI11	Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11	PYRICULARIA ORYZAE RESISTANCE 11	Pyricularia oryzae resistance 11, Magnaporthe grisea resistance zh, Blast resistance 11			8	"PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Zhai-Ya-Quing8 (Indica). According to \"RGN no.11, p16\", Pi-zh was renamed Pi-11(t) ."	 Tolerance and resistance - Disease resistance			GR:0060638		30.0	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000484 - seed shape, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
838	V8	v8	VIRESCENT 8	virescent8, virescent 8, virescent-8			8	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060987	1		GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000373 - inflorescence anatomy and morphology trait	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
839	SUG	sug(su), su, sug1, su1, su-1	SUGARY ENDOSPERM	sugary endosperm, sugary endosperm-1, sugary-1, sugary		sugary-1	8	Endosperm is wrinkled but translucent and hard [597]. The inner part of starch layer is not stained by I-KI solution, but the outer part is stained weakly [440]. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. sugary in Nakamura et al. 1992. The starch mutant sugary contains reduced activities of isoamylase1 (ISA1) (Kawagoe et al. 2005).	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances			GR:0060948	1	115.0	GO:0009568 - amyloplast starch grain	TO:0000099 - sugary endosperm, TO:0002658 - starch grain synthesis, TO:0000587 - endosperm quality, TO:0000196 - amylose content	PO:0009089 - endosperm 
840	ADH2	Adh2*, Adh2	ALCOHOL DEHYDROGENASE 2	Alcohol dehydrogenase2, Alcohol dehydrogenase 2, Alcohol dehydrogenase-2	ALCOHOL DEHYDROGENASE 2		11	Dimer. P & C(ST-H). EC=1.1.1.1 Q4R1E8(indica). Q0ITW7(japonica). AF148602-AF148632 (O.stiva and other wild rice species). M36469. X16297. AB208516-AB208542 (Oryza rufipogon and other rice species). AY169483-AY169492 (wild rice species). FJ266019-FJ266028 (indica and other wild rice species).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0210500	LOC_Os11g10510.2, LOC_Os11g10510.1	GR:0060012			GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0018468 - alcohol dehydrogenase (acceptor) activity, GO:0055114 - oxidation reduction, GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding, GO:0001666 - response to hypoxia		
842	ATUB	atub*, atub	ALPHA TUBULIN	Alpha tubulin, alpha tubulin	ALPHA TUBULIN		9		 Biochemical character			GR:0060064			GO:0006457 - protein folding, GO:0045298 - tubulin complex		
843	BPH	Bph(t)*, Bph11	BROWN PLANTHOPPER RESISTANCE	brown planthopper resistance, Brown planthopper resistance, Brown planthopper resistance-11			9	PO:0009005; root.	 Tolerance and resistance - Insect resistance			GR:0060099			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
844	CHS1	chs1(t)*, chs1	CHLOROSIS CAUSED BY LOW TEMPERATURE 1	chlorosis caused by low temperature1, chlorosis caused by low temperature 1, chlorosis caused by low temperature-1		chs1-A, chs1-B, chs1-C	9	chlorosis caused by low temperature (17C). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060129			GO:0009409 - response to cold, GO:0015995 - chlorophyll biosynthetic process, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000432 - temperature response trait	PO:0009025 - vascular leaf 
845	CYC1	cyc1*, cyc1	CYCLOPHILIN 1	cyclophilin1, cyclophilin 1, cyclophilin-1	CYCLOPHILIN 1		9		 Biochemical character			GR:0060180			GO:0016018 - cyclosporin A binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0004600 - cyclophilin		
846	D57	d57[d(x)], dwf38, d(x), d57	DWARF	dwarf, dwarf-57			9	PO:0009047; stem ; PO:0000003; whole plant ; PO:0009010; seed ; PO:0005005; shoot internode. 	 Vegetative organ - Culm			GR:0060222			GO:0007275 - multicellular organismal development	TO:0000391 - seed size, TO:0000576 - stem length, TO:0000132 - basal internode diameter, TO:0000207 - plant height, TO:0000432 - temperature response trait	PO:0000003 - whole plant , PO:0005005 - shoot internode , PO:0009010 - seed , PO:0009047 - stem 
847	DP	dp(t)*, dp3, dp	DEPRESSED PALEA	depressed palea, depressed palea-3			9	PO:0009038; palea ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060240			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000484 - seed shape, TO:0000436 - spikelet sterility	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009038 - palea 
848	DU2120	du2120*, du10, du2120	DULL ENDOSPERM 2120	dull endosperm(2120), dull endoaperm (2120), dull endosperm-10			9	PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060270			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
849	EST12	Est12	ESTERASE 12	Esterase12, Esterase 12, Esterase-12	ESTERASE 12	Est12-0, Est12-1	9	Monomers. S & P(PAGE-TBE). The band migrates faster than that of Est11 and slower than that of Est3. Active in the yellow part of the plumule. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060316			GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016787 - hydrolase activity		
850	EST3	Est3	ESTERASE 3	Esterase3, Esterase 3, Esterase-3	ESTERASE 3	Est3-1 (Est3-S), Est3-2 (Est3-F)	9	Monomer. Red band. L(PAGE-TBE,AG). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060307			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
851	GLUP1	Glup1(Esp5, Gup1), Gup1, Esp5, Glup1	GLUTELIN PRECURSOR 1	Glutelin precursor1, Glutelin precursor 1, Glutelin precursor-1	GLUTELIN PRECURSOR 1		9	High content of 57kDa polypeptide (glutelin precursor polypeptide) with low content of 40kDa and 20kDa polypeptides. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060411			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait, TO:0000109 - endosperm storage protein-2 content	PO:0009089 - endosperm 
852	GLUP2	glup2(esp6, gup2), esp6, gup2, glup2	GLUTELIN PRECURSOR 2	glutelin precursor2, glutelin precursor 2, glutelin precursor-2	GLUTELIN PRECURSOR 2		9	High content of 57kDa polypeptide (glutelin precursor polypeptide) with low content of 40kDa and 20k polypeptides. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060412			GO:0045735 - nutrient reservoir activity	TO:0000109 - endosperm storage protein-2 content, TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
853	GLUP5	Glup5(t)*, Glup5(t), Glup5	GLUTELIN PRECURSOR 5	Glutelin precursor5, Glutelin precursor 5, Glutelin precursor-5	GLUTELIN PRECURSOR 5		9	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060415			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
854	GM	gm1, gm2(pd), pd, gm13	GALL MIDGE RESISTANCE 	gall midge resistance, gall midge resistance-13			9	duplicate. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060424			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
855	HSP2*	hsp2*, hsp2	HEAT SHOCK PROTEIN2	heat shock protein2, heat shock protein 2, heat shock protein-2	HEAT SHOCK PROTEIN2		9	PO:0009011; plant structure ; PO:0000003; whole plant.	 Biochemical character,  Tolerance and resistance - Stress tolerance			GR:0060453			GO:0042026 - protein refolding, GO:0003773 - heat shock protein activity	TO:0000432 - temperature response trait, TO:0000259 - heat tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
856	HSP4*	hsp4*, hsp4	HEAT SHOCK PROTEIN4	heat shock protein4, heat shock protein 4, heat shock protein-4	HEAT SHOCK PROTEIN4		9	PO:0009011; plant structure ; PO:0000003; whole plant.	 Biochemical character,  Tolerance and resistance - Stress tolerance			GR:0060454			GO:0003773 - heat shock protein activity, GO:0042026 - protein refolding	TO:0000432 - temperature response trait, TO:0000259 - heat tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
857	MAN	Man	MANNAN IN ENDOSPERM CELL WALL	Mannan in endosperm cell wall			9	Accumulation of mannan (glucomannan) in endosperm cell wall. PO:0009011; plant structure ; PO:0000003; whole plant.	 Seed - Physiological traits - Storage substances			GR:0060519			GO:0006080 - substituted mannan metabolic process	TO:0000489 - carbohydrate composition related trait	PO:0000003 - whole plant , PO:0009011 - plant structure 
858	MS10	ms10	MALE STERILE 10	male sterile10, male sterile 10, male sterile-10			9	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060547			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
859	PKC1	pkc1*, pkc1	PROTEIN KINASE C HOMOLOGY 1	protein kinase C homology1, protein kinase C homology 1, protein kinase C homology-1	PROTEIN KINASE C HOMOLOG 1		9		 Biochemical character			GR:0060669			GO:0004697 - protein kinase C activity, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
860	R45S1	R45s1*(rDNA1), rDNA1, r45s, R45s1	45S RIBOSOMAL DNA 1	45S ribosomal DNA1, 45S ribosomal DNA 1, 45S ribosomal DNA-1			9		 Biochemical character			GR:0060715			GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0000182 - rDNA binding, GO:0006412 - translation		
861	R5S3	R5s3*, R5s3	5S RIBOSOMAL DNA 3	5S ribosomal DNA3, 5S ribosomal DNA 3, 5S ribosomal DNA-3			9		 Biochemical character			GR:0060714			GO:0005840 - ribosome, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0000182 - rDNA binding		
862	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9	SPREADING STUB	Spreading stub, Tiller angle control 1		spk(t), tac1	9	AB365455. AP005682.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os09g0529300 	LOC_Os09g35980.2, LOC_Os09g35980.1	GR:0060901			GO:0007275 - multicellular organismal development	TO:0000346 - tiller number, TO:0000567 - tiller angle, TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0000427 - culm angle	PO:0009047 - stem 
863	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1	SUBMERGENCE TOLERANCE 1	Submergence tolerance1, Submergence tolerance 1, Submergence tolerance-1			9	Tolerance to submergence for 10-20 days.[797] DQ011598, DQ011604, DQ011607. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060943			GO:0009413 - response to flooding, GO:0003677 - DNA binding	TO:0000207 - plant height, TO:0000103 - deepwater stress, TO:0000286 - submergence sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
864	TELSA1	Telsa1*, Telsa1	TELOMERES	Telomeres, Telomere			9		 Biochemical character			GR:0060952			GO:0005696 - telomere		
865	IBF	IBf	INHIBITOR FOR BROWN FURROWS	Inhibitor for brown furrows			9	This inhibits the expression of Bf, glumes becoming usual straw color. PO:0009047; stem ; PO:0009039; glume ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Coloration - Others			GR:0060466				TO:0000264 - lemma and palea color, TO:0000056 - stem color	PO:0009039 - glume , PO:0009047 - stem , PO:0009088 - seed coat 
866	LAM	lam(t), lam	LOW AMYLOSE ENDOSPERM	low amylose endosperm, low allergenic protein			9	Low amylose content in translucent grain. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060492			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000196 - amylose content, TO:0000098 - glutinous endosperm, TO:0000266 - chalky endosperm	PO:0009089 - endosperm 
867	DN1	Dn1	DENSE PANICLE 1	Dense panicle1, Dense panicle 1, Dense panicle-1			9	PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060235		45.0	GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000089 - panicle type, TO:0000142 - secondary branching of inflorescence	PO:0009049 - inflorescence 
868	DP2	dp2	DEPRESSED PALEA 2	depressed palea2, depressed palea 2, depressed palea-2			9	The palea is undergrown so that the spikelet becomes crescent shape and the kernel shape and size also abnormal.[129] PO:0009038; palea ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060239		45.0	GO:0007275 - multicellular organismal development	TO:0000484 - seed shape, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000499 - flower anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009038 - palea 
869	DRP2	drp2	DRIPPING-WET LEAF 2	dripping-wet leaf2, dripping-wet leaf 2, dripping-wet leaf-2			9	Entire leaf surface appears wet as it is quite hydrophile and does not shed water. This mutant has poor viability. [129] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060242		51.0	GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
870	BP	Bp	BURLUSH-LIKE PANICLE	Burlush-like panicle			9	Dense panicle due to short and undulate lachis and depressed palea. PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060088		63.0	GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000089 - panicle type	PO:0009049 - inflorescence 
871	BPH3	Bph3	BROWN PLANTHOPPER RESISTANCE 3	brown planthopper resistance 3, Brown planthopper resistance-3			6	PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. The Bph3 locus was localized to approximately 190 kb interval flanked by markers RM19291 and RM8072 (Jairin et al. 2007).	 Tolerance and resistance - Insect resistance			GR:0060091			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
872	BPH4	bph4	BROWN PLANTHOPPER RESISTANCE 4	brown planthopper resistance 4, brown planthopper resistance-4			6	PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060092			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
873	DU1	du1	DULL ENDOSPERM 1	dull endosperm1, dull endosperm 1, dull endosperm-1		du-1	10	Endosperm is inbetween waxy and translucent. Unlike the floury character, the dull character is expressed only when the grains are completely dry.[20356] Lowers the amylose content in endosperm. I-KI reaction is dark blue. low amylose content mutant. PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0020039; leaf lamina ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009089; endosperm. GRO:0007151; 6.1-flowering stage ; GRO:0007045; 09-mature grain stage.  a pre-mRNA processing (Prp1) family protein.	 Seed - Physiological traits - Storage substances	Os10g0498600	LOC_Os10g35550.1	GR:0060261			GO:0006396 - RNA processing, GO:0009568 - amyloplast starch grain, GO:0005622 - intracellular, GO:0005976 - polysaccharide metabolic process, GO:0019252 - starch biosynthetic process	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009005 - root , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009089 - endosperm , PO:0020039 - leaf lamina , PO:0020104 - leaf sheath 
874	EF	Ef(t)*, ef(t)*, Ef, ef	EARLINESS INTRODUCED FROM ORYZA AUSTRALIENSIS	Earliness introduced from Oryza australiensis, earliness introduced from Oryza australiensis or O. glaberrima			10	PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060284			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading, TO:0000469 - days to maturity	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
875	GCW2	gcw2*, gcw2	GLYCIN-RICH CELL WALL STRUCTUAL PROTEIN 2	glycin-rich cell wall structual protein2, glycin-rich cell wall structual protein 2, glycin-rich cell wall structual protein-2	GLYCIN-RICH CELL WALL STRUCTUAL PROTEIN 2		10		 Biochemical character			GR:0060359			GO:0005199 - structural constituent of cell wall		
876	GCW4	gcw4*	GLYCIN-RICH CELL WALL STRUCTUAL PROTEIN 4	glycin-rich cell wall structual protein4, glycin-rich cell wall structual protein 4, glycin-rich cell wall structual protein-4	GLYCIN-RICH CELL WALL STRUCTUAL PROTEIN 4		10		 Biochemical character			GR:0060360			GO:0005199 - structural constituent of cell wall		
877	GLH3	Glh3	GREEN LEAFHOPPER RESISTANCE 3	Green leafhopper resistance3, Green leafhopper resistance 3, Green leafhopper resistance-3			10	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060378			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
878	GLU2	glu2(t)*, glu9, LGLU2	GLUTELIN 2	lack of glutelin subunit2, lack of glutelin subunit 2, lack of glutelin subunit-2, rice glutelin-9	GLUTELIN 2		10	The asidic subunits of glutelin appear as several sopts in two-dimensional electrophoresis. glu2 is deficient in spot 2a. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060391			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
879	HWD1	hwd1	HYBRID WEAKNESS D1	hybrid weakness d1, hybrid weakness-d1			10	Weakness occurs in F2 from varietal crosses having complementary gene hwd2. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060461			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000355 - heterosis, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
880	R45S2	R45s2*(rDNA2), rDNA2, R45s2	45S RIBOSOMAL DNA 2	45s ribosomal DNA2, 45s ribosomal DNA 2, 45S ribosomal DNA-2			10		 Biochemical character			GR:0060716			GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0000182 - rDNA binding, GO:0005840 - ribosome		
881	RK2	rk2	ROUND KERNEL 2	round kernel2, round kernel 2, round kernel-2			10	Shorter and wider kernels compared with normal ones.[132] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060762		36.0		TO:0000287 - brown rice shape, TO:0000149 - seed width, TO:0000391 - seed size	PO:0009010 - seed 
882	YGL	ygl*, ygl	YELLOW GREEN LEAF	yellow green leaf			10	This chlorophyll mutant exhibits yellow-green leaves at all stages of growth. [228] PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stag.	 Coloration - Chlorophyll			GR:0061041			GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
883	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22	EARLINESS 1	Earliness1, Earliness 1, Earliness-1, EARLY HEADING DATE 1, Early heading date1	TWO-COMPONENT RESPONSE REGULATOR EHD1 	Ef1-a, Ef1-b, Ef1-gamma, Ef1-x, Ef1-n, ef1-h, ehd1, Ehd1-Nip, Ehd1-gla, ehd1-11	10	This gene controls basic vegetative growth period. Ef1-n which is one of the multiple alleles at Ef1 locus accelerates the heading day by 20 days earlier than the original line T65. AB092506 Dominant alleles of Ehd1 confer short-day promotion of heading. Taichung 65, a Japonica variety, possesses a recessive allele. Ehd1 encodes a B-type response regulator. Dominant allele from O. glaberrima (IRGC104038) causes early heading. O. glaberrima(IRGC104038). Ehd1 occupies the same locus as Ef1. B-type RR. B-TYPE RR. Q7Y0W5. PO:0009049; inflorescence. Ehd1 occupies the same locus as EF1. PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. JN594327-JN594403 (O.sativa and other wild rice species). JN402157-JN402177 (O.sativa and other wild rice species). KC609243-KC610817 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os10g0463400	LOC_Os10g32600.1	GR:0060278			GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009908 - flower development, GO:0000156 - two-component response regulator activity, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:2000028 - regulation of photoperiodism, flowering, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009648 - photoperiodism, GO:0048576 - positive regulation of short-day photoperiodism, flowering	TO:0006032 - panicle size, TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity, TO:0000371 - yield trait, TO:0000469 - days to maturity, TO:0002759 - grain number, TO:0000050 - inflorescence branching	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
884	FGL	fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB	FADED GREEN LEAF	faded green leaf, NADPH: protochlorophyllide oxidoreductase B, NADPH-dependent protochlorophyllide oxidoreductase A		fgl, osporB, fgl/osporB	10	Q8W3D9 . Whitish yellow margin of leaves in the seedling stage and faded green leaves after the tillering stage. [131] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. PoPA in Chen et al. 2013, Deng et al. 2014, Qiu et al. 2018. PORB in Inagaki et al. 2015, Yang et al. 2015  and Kong et al. 2016.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os10g0496900	LOC_Os10g35370.2, LOC_Os10g35370.1	GR:0060329		16.0	GO:0000166 - nucleotide binding, GO:0007623 - circadian rhythm, GO:0009416 - response to light stimulus, GO:0009658 - chloroplast organization, GO:0015979 - photosynthesis, GO:0016630 - protochlorophyllide reductase activity, GO:0048366 - leaf development, GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process	TO:0000063 - mimic response, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000496 - carotenoid content, TO:0000326 - leaf color, TO:0000075 - light sensitivity, TO:0000298 - chlorophyll ratio, TO:0000655 - leaf development trait, TO:0002715 - chloroplast development trait	PO:0001050 - leaf development stage , PO:0009025 - vascular leaf 
885	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6	RESTORATION OF FERTILITY 1	"Pollen fertility restoration1, Pollen fertility restoration-1, \"Rf1 protein, mitochondrial precursor\", \"Rf1 protein, mitochondrial\", \"Protein Rf1, mitochondrial\", fertility restorer 5, Pentatricopeptide Repeat Protein RF5, pentatricopeptide repeat protein 791, Fertile revertant from II-32A, Pollen fertility restoration-5, RESTORATION OF FERTILITY 5, RESTORATION OF FERTILITY 1A, pentatricopeptide repeat motif containing gene 6, PPR motif-containing gene 6"	RF1 PROTEIN	Rf1-a, Rf1-b, Rf1-c, Rf1-d, Rf1-e, rf-1	10	Pollen fertility restoration gene of BT-type cytoplasmic male sterility, being located on chromosome 10 between RFLP markers fL601 and C1361. AB179840. AB110443, AB110444. Q76C99. AB470406, AB470408. PO:0009066; anther. a 791-aa protein containing 16 PPR motifs. WA type CMS. Rf5 is identical to Rf1 (Rf1a) in BTCMS rice (Hu et al. 2012). LOC_Os10g35440. DQ311052, DQ311053. (Os10g0497450 in Ncbi and UniProt). a subunit of the restoration of fertility complex (RFC).	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration,  Tolerance and resistance - Stress tolerance	Os10g0497432 	LOC_Os10g35440.1	GR:0060740,GR:0060744		16.5	GO:0005739 - mitochondrion, GO:0007275 - multicellular organismal development, GO:0046688 - response to copper ion	TO:0000308 - male fertility restoration trait, TO:0000498 - female fertility restoration trait, TO:0000021 - copper sensitivity	PO:0009066 - anther 
886	SPL10	spl10	SPOTTED LEAF 10	spotted leaf10, spotted leaf 10, spotted leaf-10			10	Yellow or brown spots on leaves. [RGN10:8] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060911		20.5	GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
887	PGL	pgl	PALE GREEN LEAF	pale green leaf			10	Pale green leaves appear much clearly in the stage from transplanting to heading. [131] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. 	 Coloration - Chlorophyll			GR:0060605		28.5	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
889	CHS	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26	CHALCONE SYNTHASE	Chalcone synthase, Naregenin-chalcone synthase, chalcone synthase, chalcone synthase 1, polyketide synthase 26	CHALCONE SYNTHASE		11	EC=2.3.1.74 A2ZEX7(indica). Q2R3A1(japonica). AB000801. X89859. D29697. OsCHS1 in Hayashi et al. 2014 and Oikawa et al. 2015, Chen et al. 2018.	 Biochemical character,  Coloration - Anthocyanin,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0530600	LOC_Os11g32650.1	GR:0060128			GO:0016210 - naringenin-chalcone synthase activity, GO:0008415 - acyltransferase activity, GO:0009813 - flavonoid biosynthetic process, GO:0009411 - response to UV, GO:0042742 - defense response to bacterium, GO:0051553 - flavone biosynthetic process, GO:0010332 - response to gamma radiation, GO:0051555 - flavonol biosynthetic process	TO:0000290 - flavonoid content, TO:0000175 - bacterial blight disease resistance, TO:0000160 - UV light sensitivity, TO:0000707 - pericarp color	PO:0009047 - stem 
890	D2	D2*, Db, Dhl2	DOMINANT LETHAL2 FROM O. SATIVA	Dominant lethal2 from O. sativa, Dominant hybrid lethal-2			11	Dominant lethat gene obtained from O. sativa. PO:0009009; embryo ; PO:0006457; ovule (sensu Poaceae) ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060183			GO:0007275 - multicellular organismal development, GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis	TO:0000355 - heterosis, TO:0000042 - f1-hybrid incompatibility	PO:0020003 - plant ovule , PO:0009009 - plant embryo , PO:0009089 - endosperm 
891	DSE	Dse*, Dse	DIAMETER OF SEMINAL ROOT	Diameter of seminal root			11	This gene controls the thickness of seminal root, the thickness being dominant over the slenderness. PO:0009005; root.	 Vegetative organ - Root			GR:0060260			GO:0007275 - multicellular organismal development	TO:0000306 - root thickness	PO:0009005 - root 
892	ESP3	esp3(rsp3), rsp3, esp3	ENDOSPERM STORAGE PROTEIN 3	endosperm storage protein3, endosperm storage protein 3, endosperm storage protein-3	ENDOSPERM STORAGE PROTEIN 3		11	The intensities of 10kD and 13a polypeptide in seed storage protein are lower that those for the original cultivar. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060303			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
893	FDP1	Fdp1*, Fdp1	FRUCTOSE1,6-DIPHOSPHATASE 1	"\"Fructose1, 6-diphosphatase1\", \"Fructose1, 6-diphosphatase 1\", \"Fructose-1, 6-diphosphatase-1\""	FRUCTOSE1,6-DIPHOSPHATASE 1	Fdp1-0, Fdp1-1, Fdp1-2	11	Dimer. P(ST,PAGE-TC).	 Biochemical character			GR:0060324			GO:0006000 - fructose metabolic process, GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity		
894	GAL	gal(lt), It-m, lt, gal	GAMETIC LETHAL	gametic lethal			11	Lethality both for male and female gametes in coexistence with d60. [RGN9:3]	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060358			GO:0007275 - multicellular organismal development		
895	GRHB	Grhb(t)*, Grhb, Grh4	GREEN RICE LEAFHOPPER RESISTANCE B	Green rice leafhopper resistance B, Green rice leafhopper resistance-4			11	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060435			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
896	LK2	Lk2(t) (Lknb), Lknb, Lk2	NAGAYAMA 77402B LONG GRAIN 2	Nagayama 77402b long grain2, 'Nagayama 77402b (N182)' long grain, Long kernel-2			11	Long grain with low seed setting and reduced spikelet number. [781] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060504			GO:0007275 - multicellular organismal development	TO:0000146 - seed length	PO:0009010 - seed 
897	MIK	mi k, mik, mi2	MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT	'Kitaake mutant' minute grain, minute grain-2			11	Small grain and late heading. [RGN11:11] PO:0009049; inflorescence ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. RO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Grain shape			GR:0060526			GO:0032196 - transposition, GO:0003700 - transcription factor activity	TO:0000089 - panicle type, TO:0000137 - days to heading, TO:0000146 - seed length, TO:0000436 - spikelet sterility, TO:0000181 - seed weight, TO:0000391 - seed size	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009049 - inflorescence 
898	MPI	MPi z(Rb6), Rb6, MPiz	MODIFIER FOR BLAST RESISTANCE	Modifier for blast resistance gene Pi z, Modifier for blast resistance (Piz)			11	Modifier for blast resistance gene Pi z. PO:0009025; leaf. Original line is Zenith (Japonica).	 Tolerance and resistance - Disease resistance			GR:0060533			GO:0009620 - response to fungus	TO:0000074 - blast disease, TO:0000522 - stomatal conductance, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
899	NAL2	nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS	NARROW LEAF 2	narrow leaf2, narrow leaf 2, narrow leaf-2, curl leaf-2, WUSCHEL related homeobox 3A, WUSCHEL-related homeobox 3A	WUSCHEL-LIKE HOMEOBOX 3A 	nal2, oswox3a	11	Forming duplicate or triplicate genes with nl1 and/or nl3, this gene expresses a narrow leaf. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage. NAL2 on chromosomes 11 and NAL3 on chromosome 12 encode an identical OsWOX3A/OsNS protein that is homologous to NS of maize and PRS of Arabidopsis (Cho et al. 2013). Q33DK1, A2ZH47. AM490243. AM234748. OsWOX3 in Dai et al. 2007. OsNS1/OsNS2 and OsWOX3 (corredponding to Os11g0102100/Os12g0101600) in Cheng et al. 2014. TO:0000784: inflorescence branch anatomy and morphology trait. AB218893.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Panicle, Mode of branching	Os11g0102100	LOC_Os11g01130.2, LOC_Os11g01130.1	GR:0060566			GO:0043565 - sequence-specific DNA binding, GO:0010336 - gibberellic acid homeostasis, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0048364 - root development, GO:0009740 - gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000492 - leaf shape, TO:0000370 - leaf width, TO:0000207 - plant height, TO:0002675 - gibberellic acid content, TO:0001013 - lateral root number, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0000402 - grain width, TO:0000166 - gibberellic acid sensitivity, TO:0000657 - spikelet anatomy and morphology trait, TO:0000346 - tiller number	PO:0009025 - vascular leaf , PO:0007520 - root development stage 
900	PBR*	PBR*	PANICLE BLAST RESISTANCE	Panicle blast resistance			11	Resistant to the panicle blast disease. Original line is St No.1 (Japonica/Indica). Map position (80.5-120.3 cM).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000477 - panicle blast disease resistance	
901	PBST*	Pbst*	PANICLE BLAST RESISTANCE	Panicle blast resistance			11		 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000477 - panicle blast disease resistance	
902	PIF	Pi f, PIF, Pif, RMg3, Pi-f	PYRICULARIA ORYZAE RESISTANCE-F	Pyricularia oryzae resistance-f, Magnaporthe grisea resistance-f, Blast resistance f			11	PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. Original line is Chugoku 31-1 (St. No.1) (J).	 Tolerance and resistance - Disease resistance			GR:0060614			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000509 - leaf blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
903	PIIS1	Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1	PYRICULARIA ORYZAE RESISTANCE IS-1	Pyricularia oryzae resistance-is-1, Magnaporthe grisea resistance-is1, Blast resistance is1			11	cumulative. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Imochi shirazu (Japonica).	 Tolerance and resistance - Disease resistance			GR:0060617			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000511 - phosphorus uptake, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
904	PIKUR2	Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2	PYRICULARIA ORYZAE RESISTANCE-KUR-2	Pyricularia oryzae resistance-kur-2, Magnaporthe grisea resistance-kur2, Blast resistance kur2			11	Field resistant gene to rice blast found in cv. 'Kuroka'. Additive with Pi kur1. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance			GR:0060621			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000515 - relative growth rate, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
905	PISE1	Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1	PYRICULARIA ORYZAE RESISTANCE SE 1	Pyricularia oryzae resistance-se-1, Magnaporthe grisea resistance-se1, Blast resistance se1			11	additive. The independent genes Rb1, Rb2 and Rb3 acted additively to control resistance to blast fungus (Goto 1970). PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060622			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000516 - relative root length, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
906	PI30	Pi-30(t), Pi30(t)	PYRICULARIA ORYZAE RESISTANCE 30	Magnaporthe grisea resistance 30, Blast resistance 30			11	Original line is IR64(Indica). Map position (59.4-60.4). Pi-30(t) may correspond to the Pi-a (Sallaud et al. 2003).	 Tolerance and resistance - Disease resistance			GR:0060630			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000482 - chemical stress sensitivity, TO:0000477 - panicle blast disease resistance	
907	PI18	Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18	PYRICULARIA ORYZAE RESISTANCE 18	Pyricularia oryzae resistance 18, Magnaporthe grisea resistance-18, Blast resistance 18			11	Resistant to the race KI-313 of Pyricularia grisea isolated in Korea. [RGN14:10]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Suweon365 (Japonica).	 Tolerance and resistance - Disease resistance			GR:0060647		117.9	GO:0009620 - response to fungus	TO:0000493 - leaf composition trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
908	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C	PYRICULARIA ORYZAE RESISTANCE 1	Pyricularia oryzae resistance 1, Magnaporthe grisea resistance-1, Blast resistance 1		pi1-1, pi1-2	11	resistant to several races of Pyricularia grisea. [RGN12:19]. PO:0009025; leaf. GRO:0007047; 02-seedling. Original line is LAC23 (Japonica). Map position (112.1-117.9 cM).  Pi1 is an allele at the Pik locus. Like other alleles at this locus, Pi1 consists of two genes: Pi1-5C and Pi1-6C (Hua et al. 2012). HQ606329.	 Tolerance and resistance - Disease resistance			GR:0060634			GO:0009620 - response to fungus, GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0005524 - ATP binding, GO:0017111 - nucleoside-triphosphatase activity	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000504 - leaf temperature	PO:0009025 - vascular leaf 
909	R45S3	R45s3*, R45s3	45S RIBOSOMAL DNA 3	45s ribosomal DNA3, 45s ribosomal DNA 3, 45S ribosomal DNA-3			11		 Biochemical character			GR:0060717			GO:0000182 - rDNA binding, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
910	R5S1	R5s1*, r5s, R5s1	5S RIBOSOMAL DNA 1	5S ribosomal DNA1 (5S rRNA-1), 5S ribosomal DNA-1(5S rRNA-1), 5S ribosomal DNA-1, 5S rRNA-1, 5S ribosomal RNA, 5S rRNA, 5S rDNA			11	D26370. M18171. Z11475. Z11411-Z11414, Z11469-Z11474 (wild rice species). EF197121-EF197133, EU439271-EU439291 (indica and other wild rice species).	 Biochemical character			GR:0060712			GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0000182 - rDNA binding, GO:0006412 - translation		
911	S11	S11(t)	HYBRID STERILITY 11	Hybrid sterility11, Hybrid sterility 11, Hybrid sterility-11			11	Gametic eliminator due to an allelic interaction.  Original line: PTB10, indica type variety. [RGN11:8] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060818			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
912	S3		HYBRID STERILITY 3	Hybrid sterility3, Hybrid sterility 3, Hybrid sterility-3		S3-a .	11	Sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060810			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
913	STVB	Stvb(St2), St2, Stvb, Stv2	STRIPE DISEASE RESISTANCE B	Stripe disease resistance, Stripe disease resistance-b, Stripe disease resistance-2, STRIPE DISEASE RESISTANCE		Stvb-i	11	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Disease resistance			GR:0060939			GO:0009615 - response to virus	TO:0000148 - viral disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
914	TELSM3	Telsm3*, Telsm3	TELOMERES 3	Telomeres3, Telomere 3, Telomere-3			11		 Biochemical character			GR:0060954			GO:0005696 - telomere		
915	XA A*	Xa a*, XAA, Xaa*, Xaa	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE A	Xanthomonas oryzae pv. oryzae resistance-a, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE A, Xanthomonas campestris pv. oryzae resistance-a			11		 Tolerance and resistance - Disease resistance			GR:0061032			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
916	XA H*	Xa h*, XAH, Xah*, Xah	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE H	Xanthomonas oryzae pv. oryzae resistance-h, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE H, Xanthomonas campestris pv. oryzae resistance-h			11		 Tolerance and resistance - Disease resistance			GR:0061034			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
917	XA	xa(t)*	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE	Xanthomonas oryzae pv. oryzae resistance			11	Rice bacterial blight resistance.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
918	XA10	Xa10, Xa-10	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 10	Xanthomonas oryzae pv. oryzae resistance 10, Xanthomonas campestris pv. oryzae resistance-10, Xanthomonas oryzae pv. oryzae resistance-10			11	JX025645 (Indica Xa10 gene).	 Tolerance and resistance - Disease resistance			GR:0061018			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
919	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 3	Xanthomonas oryzae pv. oryzae resistance 3, Xanthomonas campestris pv. oryzae resistance-3, Xanthomonas oryzae pv. oryzae resistance-3, Xanthomonas oryzae pv. oryzae resistance 26			11	Resistant to the all Japanese Isolate groups in adult only. [366]. This gene is located on chromosome 11 and tightly linked with Xa4. PO:0009011; plant structure ; PO:0000003; whole plant. AY364476 (replaced by DQ355952). DQ355952, DQ355953. DQ426645, DQ426646, DQ426647. OoRKb1 (O. officinalis), OmRKb1 (O. minuta).  wild rice orthologs: OoRKb1 (Xa3/Xa26-2) in O. officinalis (HQ148674), OmRKb1 (Xa3/Xa26-3) in O. minuta (HQ148675). leucine-rich repeat (LRR) receptor kinase-like protein. 	 Tolerance and resistance - Disease resistance			GR:0061013,GR:0061358			GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane	TO:0000175 - bacterial blight disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
920	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 4	Xanthomonas oryzae pv. oryzae resistance 4, Xanthomonas campestris pv. oryzae resistance-4, Xanthomonas oryzae pv. oryzae resistance-4			11	Resistant to the Philippine isolate Pxo25.  [368]. a cell wall-associated kinase.  KU761305 (Xa4 in rice line IRBB4), KU761306 (xa4 in rice variety IR24), KU761307 (Xa4 in rice variety IR64), KU761308 (Xa4 in rice variety Teqing), KU761309 (xa4 in rice variety Minghui 63), KU761310 (xa4 in rice variety Zhenshan 97), KU761311 (xa4 in rice variety Mudanjinag 8), KU761312 (xa4 in rice variety Zhonghua 11), and KU761313 (xa4 in rice variety Nipponbare). GO:2001008: positive regulation of cellulose biosynthetic process.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance			GR:0061014			GO:0052324 - cell wall cellulose biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009828 - plant-type cell wall loosening, GO:0009689 - induction of phytoalexin biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000175 - bacterial blight disease resistance, TO:0000207 - plant height, TO:0000051 - stem strength, TO:0002668 - jasmonic acid content	
921	D53	D53(D K3), DK3, Dwf34, SMXL6/7/8	DWARF KYUSHU 3	Dwarf Kyushu3, Dwarf Kyushu 3, Dwarf Kyushu-3, dwarf-53, DWARF 53, DWARF53, SUPPRESSOR OF MAX2-LIKE6/7/8	SUBSTRATE OF SCF-D3 UBIQUITINATION COMPLEX	d53, d53-1D	11	Dominant dwarf gene with many tillers. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf. LOC_Os11g01330.  a repressor of strigolactone signalling. a substrate of the SCFD3 ubiquitination complex.	 Vegetative organ - Culm	Os11g0104300	LOC_Os11g01330.1	GR:0060218			GO:0007275 - multicellular organismal development, GO:0009755 - hormone-mediated signaling	TO:0000089 - panicle type, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000326 - leaf color, TO:0000135 - leaf length, TO:0000576 - stem length, TO:0000077 - shoot anatomy and morphology trait, TO:0000401 - plant growth hormone sensitivity	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
922	Z1	z1	ZEBRA 1	zebra1, zebra 1, zebra-1			11	Zebra bands manifest clearly on leaves during the tillering stage. [131] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061047		9.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
923	ESP2	esp2(rsp2), rsp2, esp2, PDIL1-1	ENDOSPERM STORAGE PROTEIN 2	endosperm storage protein2, endosperm storage protein 2, endosperm storage protein-2, endosperm storage protein mutant2, protein disulfide isomerase-like 1-1	ENDOSPERM STORAGE PROTEIN 2		11	The intensity of 57kD polypeptide in seed storage protein is higher than that for the original cultivar. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060302		17.0	GO:0045735 - nutrient reservoir activity	TO:0000109 - endosperm storage protein-2 content, TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
924	V9	v9	VIRESCENT 9	virescent9, virescent 9, virescent-9			11	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060988		23.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
925	SH1	sh1	SHATTERING 1	shattering1, shattering 1, shattering-1		sh1	11	Shattering habit. PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0060873		33.0		TO:0000473 - grain shattering	PO:0009010 - seed 
926	PIA	Pi a, Pia, Pi-a, Pia-1, Pia-2	PYRICULARIA ORYZAE RESISTANCE A	Pyricularia oryzae resistance-a, Magnaporthe grisea resistance-a, Blast resistance a			11	Resistant to rice blast disease.  Variety 'Aichiasahi' has this gene. Pia is composed of two adjacent genes SasRGA4 (Sasanishiki allele of Os11gRGA4) and SasRGA5. Os11gRGA4: AB604621-AB604625, Os11gRGA5: AB604626-AB604630. (Okuyama et al. 2011) Among the four candidate genes (Os11g0224900, Os11g0225000, Os11g0225100 and Os11g0225300), Os11g0225100 was identified as the most promising candidate for Pia (Zeng et al. 2011). PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. LOC_Os11g11790 (=Os11g0225100) as Pia in Yu et al. 2018.	 Tolerance and resistance - Disease resistance			GR:0060612		36.0	GO:0006952 - defense response	TO:0000468 - leaf blast disease resistance, TO:0000507 - osmotic adjustment capacity, TO:0000477 - panicle blast disease resistance	PO:0020141 - stem node , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
927	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1	ALCOHOL DEHYDROGENASE 1	Alcohol dehydrogenase1, Alcohol dehydrogenase 1, Alcohol dehydrogenase-1, reduced adh activity, Alcohol dehydrogenase I	ALCOHOL DEHYDROGENASE 1	Adh1-0, Adh1-1, Adh1-2, Adh1-3, rad	11	Dimer. P & C(ST-H). EC=1.1.1.1 Q75ZX4(indica). Q2R8Z5(japonica). X16296. AF148568-AF148598 (O.sativa and other wild rice species). AY749209-AY749246 (O.sativa and other wild rice species). D10412. FJ810879-FJ810918 (Oryza glaberrima, Oryza barthii, Oryza nivara). AB469048-AB469065 (O.sativa and other wild rice species). AY169473-AY169482 (wild rice species).  DQ223326-DQ223334, DQ223352-DQ223399, DQ223404-DQ223408, DQ911245, DQ911246 (wild rice species). EF069438-EF069504 (O.sativa and other wild rice species). FJ266019-FJ266028 (indica and other wild rice species). GQ203296-GQ203303 (wild rice species). JQ414289-JQ414355 (wild rice species). D15646, D15540.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0210300	LOC_Os11g10480.4, LOC_Os11g10480.2, LOC_Os11g10480.1	GR:0060011		37.0	GO:0008270 - zinc ion binding, GO:0018468 - alcohol dehydrogenase (acceptor) activity, GO:0055114 - oxidation reduction, GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0005737 - cytoplasm		
928	SP1	sp, SP, OsNPF4.1, NPF4.1	SHORT PANICLE 1	short panicle, SHORT PANICLE, short panicle1, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 4.1	PEPTIDE TRANSPORTER FAMILY TRANSPORTER 1	sp1-1, sp1-2	11	LOC_Os11g12740.1 SP1 encodes a putative PTR family transporter. PO:0009049; inflorescence. Proton oligopeptide transporter (POT).	 Reproductive organ - Inflorescence,  Character as QTL - Yield and productivity	Os11g0235200	LOC_Os11g12740.1	GR:0060900		38.0	GO:0007275 - multicellular organismal development	TO:0000050 - inflorescence branching, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000089 - panicle type	PO:0009049 - inflorescence 
929	D28	d28(d C), dwf24, dC, d28	DWARF CHOKEIDAIKOKU OR LONG STEMMED	chokeidaikoku or long stemmed dwarf, dwarf-28			11	"Similar to \"Daikoku\" , but long culms.[10003] PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed ; PO:0020142; stem internode ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage."	 Vegetative organ - Culm			GR:0060207		46.0	GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development	TO:0000299 - leaf lamina color, TO:0000576 - stem length, TO:0000391 - seed size, TO:0000089 - panicle type, TO:0000145 - internode length, TO:0000492 - leaf shape, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000484 - seed shape	PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020142 - stem internode 
930	PGD1	Pgd1, 6Pgd1	PHOSPHOGLUCONATE DEHYDROGENASE	Phosphogluconate dehydrogenase1, Phosphogluconate dehydrogenase 1, Phosphogluconate dehydrogenase-1	PHOSPHOGLUCONATE DEHYDROGENASE	Pgd1-1, Pgd1-2, Pgd1-3	11	Dimer. P(PAGE-TC,ST-C), C(ST-C). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060600		56.0	GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity		
931	V4	v4	VIRESCENT 4	virescent4, virescent 4, virescent-4			11	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060983		61.0	GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000373 - inflorescence anatomy and morphology trait	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
932	LA	la	LAZY GROWTH HABIT	lazy growth habit			11	Tillers grow as spreading horizontally. [499] This gene is located on chromosome 11 flanked by markers R728 (1.0cM) and C549B (0.4cM). PO:0009047; stem ; PO:0000003; whole plant.	 Vegetative organ - Culm			GR:0060491		72.0	GO:0007275 - multicellular organismal development	TO:0000401 - plant growth hormone sensitivity, TO:0000427 - culm angle	PO:0000003 - whole plant , PO:0009047 - stem 
933	DRP7	drp7, OsHSD1, LGF1, HSD1	DRIPPING-WET LEAF 7	dripping-wet leaf7, dripping-wet leaf 7, dripping-wet leaf-7, hydroxysteroid dehydrogenase 1, Leaf Gas Film 1, dripping wet leaf 7		oshsd1, drp7	11	Leaf surface appears wet. LOC_Os11g30560. LC363889, LC363890. GO:1902930: regulation of alcohol biosynthetic process. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os11g0499600	LOC_Os11g30560.1	GR:0060247		77.0	GO:0042335 - cuticle development, GO:0009741 - response to brassinosteroid stimulus, GO:0016491 - oxidoreductase activity, GO:0055088 - lipid homeostasis, GO:0034309 - monohydric alcohol biosynthetic process, GO:0009413 - response to flooding, GO:0006633 - fatty acid biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0010166 - wax metabolic process, GO:0009651 - response to salt stress, GO:0006629 - lipid metabolic process, GO:0010025 - wax biosynthetic process	TO:0000145 - internode length, TO:0000602 - total fat content, TO:0000114 - flooding related trait, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height, TO:0000493 - leaf composition trait	PO:0020104 - leaf sheath , PO:0009025 - vascular leaf 
934	Z2	z2	ZEBRA 2	zebra2, zebra 2, zebra-2			11	Yellowish pale green zebra bands appear on leaves. [132] PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061048		95.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000339 - stem thickness, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf , PO:0009047 - stem 
935	XA21	Xa21*, Xa21, OsXA21	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 21	Xanthomonas oryzae pv. oryzae resistance 21, Xanthomonas campestris pv. oryzae resistance-21, Xanthomonas oryzae pv. oryzae resistance-21, Xanthomonas resistance 21			11	Xa21 confers resistance to diverse races of Xanthomonas oryzae pv. oryzae and encodes a receptor-like kinase with leucine-rich repeats in the extra-cellular domain.(20627) U72723, U72724, U72725, U72726, U72727, U72728, U72729, U82168.	 Tolerance and resistance - Disease resistance	Os11g0559200	LOC_Os11g35500.1	GR:0061029		104.0	GO:0005515 - protein binding, GO:0004672 - protein kinase activity, GO:0032940 - secretion by cell, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0006468 - protein amino acid phosphorylation, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016567 - protein ubiquitination, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance	
936	D27	d27(d t), dt, dwf23, d27, OsD27	DWARF BUNKETSUTO TILLERING	bunketsuto tillering dwarf, dwarf-27, DWARF27, DWARF 27, iron-binding protein D27, OsDWARF27	ION CONATINING PROTEIN		11	"Similar to \"bunketsu-waito\". Profuse tillering with slender leaves.[10003]  GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. FJ641055, C7AU21. GO:1901601: strigolactone biosynthetic process. GO:1901698: response to nitrogen compound.  GO:1901601: strigolactone biosynthetic process. GO:0090548: response to nitrate starvation. GO:1901601: strigolactone biosynthetic process. beta-carotene isomerase."	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os11g0587000		GR:0060206		109.0	GO:0007275 - multicellular organismal development, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0010223 - secondary shoot formation, GO:0016859 - cis-trans isomerase activity	TO:0000167 - cytokinin sensitivity, TO:0000576 - stem length, TO:0000346 - tiller number, TO:0001013 - lateral root number, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000370 - leaf width, TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity, TO:0000586 - seminal root length	PO:0006343 - axillary shoot system , PO:0009025 - vascular leaf , PO:0009047 - stem 
937	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4	PYRICULARIA ORYZAE RESISTANCE K	Pyricularia oryzae resistance-k, Magnaporthe grisea resistance-k, Blast resistance k		Pi k-s(Pi-s, Pik-s), Pi k-p(Pik-p), Pi k-m(Pi m, Pik-p), Pi k-h(Pik-h), Pi k-g(Pik-g), Pi1, Pik1-KA, Pik1-KU, Pik2-KA, Pik2-KU	11	Resistant to rice blast disease. Varieties 'Kanto 51' and 'Kusabue' have this gene. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. HM048900. AY914077.  AB462256(Pikm1-TS, Pikm2-TS), AB462324(Pikm1-TS), AB462325(Pikm2-TS). Pikm-specific resistance is conferred by cooperation of Pikm1-TS and Pikm2-TS (Ashikawa et al. 2008). HM048900 (Pik-2, Pik-1). A combination of Pik-1 and Pik-2 is required for the expression of Pik resistance (Zhai et al. 2011).  HM035360 (Pikp-1, Pikp-2). Both Pikp-1 and Pikp-2 are required for Pik-p function (Yuan et al. 2011). The original lines of each allele are as follows: Pi-kp from Pusur (the West Pakistani rice variety), Pi-kh from HR-22 (an Indian variety), Pi-ks in Shinriki, Pi-km in Minehikari and Pi-kg(t) in GA20. Pi-kh was renamed Pi54, because Pi-kh is ~2.5Mbp away from the Pik Locus (Sharma et al. 2010). Pi1 is an allele at the Pik locus. Like other alleles at this locus, Pi1 consists of two genes: Pi1-5C and Pi1-6C (HQ606329) (Hua et al. 2012). AB616658 (Pik1-KA), AB616659 (Pik2-KA, Pik1-KA).  Pik-H4 is an allele of the major resistance (R) gene Pi-k which consists of two adjacent nucleotide-binding domain and leucine- rich repeat (NLR) genes, Pik1 -H4 and Pik2 -H4 (Liu et al. 2017).	 Tolerance and resistance - Disease resistance	Os11g0689000/Os11g0689100		GR:0060619		141.0	GO:0006952 - defense response, GO:0017111 - nucleoside-triphosphatase activity, GO:0043531 - ADP binding, GO:0009620 - response to fungus, GO:0005524 - ATP binding	TO:0000477 - panicle blast disease resistance, TO:0000513 - potassium concentration, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
938	ALD3	Ald3*(ald1), Ald3, ald1	ALDOLASE 3	Aldolase3, Aldolase 3, Aldolase-3	ALDOLASE 3		12		 Biochemical character			GR:0060033			GO:0016832 - aldehyde-lyase activity		
939	BPH1	Bph1	BROWN PLANTHOPPER RESISTANCE 1	brown planthopper resistance 1, Brown planthopper resistance-1			12	Closely linked with bph-2. [223] PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. KX681949 (Indica).	 Tolerance and resistance - Insect resistance			GR:0060089			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
940	BPH10	Bph10(t)*, Bph10	BROWN PLANTHOPPER RESISTANCE 10	brown planthopper resistance 10*, Brown planthopper resistance-10			12	Brown planthopper resistance  introduced from Oryza australiensis. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling. KX681950 (Indica).	 Tolerance and resistance - Insect resistance			GR:0060098			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
941	DU4	du4	DULL ENDOSPERM 4	dull endosperm4, dull endosperm 4, dull endosperm-4			12	dull endosperm, low amylose content. low amylose content mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060264			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
942	GA13	ga13	GAMETOPHYTE GENE 13	gametophyte gene13, gametophyte gene 13, gametophyte gene-13			12	Distorted segregation due to gametic selection.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060355			GO:0019953 - sexual reproduction		
943	HBV	Hbv	HOJA BLANCA RESISTANCE	Hoja blanca resistance			12	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Disease resistance			GR:0060439			GO:0009615 - response to virus	TO:0000147 - rice hoja blanca disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
944	IPI	IPi(t)*, IPi. Rmg56	PYRICULARIA ORYZAE RESISTANCE	Pyricularia oryzae resistance, Magnaporthe grisea resistance, Blast resistance			12	PO:0009025; leaf. Map position (47.6-58.3 cM).	 Tolerance and resistance - Disease resistance			GR:0060472			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
945	IPI3	IPi3(t)*, IPi3, Rmg57	PYRICULARIA ORYZAE RESISTANCE	Pyricularia oryzae resistance, Magnaporthe grisea resistance, Blast resistance			12	PO:0009025; leaf. Map position (47.6-58.3 cM).	 Tolerance and resistance - Disease resistance			GR:0060473			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000469 - days to maturity, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
946	LEC	Lec*, Lec	LECTIN	Lectin	LECTIN		12		 Biochemical character			GR:0060495			GO:0005530 - lectin, GO:0005529 - sugar binding		
947	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30	PYRICULARIA ORYZAE RESISTANCE TA	Pyricularia oryzae resistance-ta, Magnaporthe grisea resistance-ta, Blast resistance ta, Thioredoxin H-type 6, H-type Thioredoxin 6, Thioredoxin 30		Pi ta-2, Pi ta-n, Pi4a(t), Pi4b(t), Pi-4a(t), Pi-4b(t), Pita Tadukan, Pita Konibora, Pita Bizor, Pita Olatifolia, Pita lati	12	Original line (Pita) is Taducan (Indica).  Original line (Pita2) is Shimokita (Japonica). AF207842, AY196754. EU770205-EU770220: Oryza sativa, O. glaberrima, O. rufipogon, O. nivara, and O. barthii, and  O. officinalis. EU346955-EU347006: Oryza rufipogon. AL772419, AB364239-AB364242, AB364479-AB364497: Oryza rufipogon and its related species. GQ918334-GQ918489 and GQ984160. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. GQ918334-GQ918489 (O.sativa and other wild rice species). GU269201-GU269204. KF891315, JN564634 (O. latifolia).  AY885738-AY885768 and DQ374698-DQ374725  (O. sativa and other wild rice species, partial cds).  LOC_Os12g18360. R Gene present in both Nipponbare and 9311. EF533785-EF533786 (partial cds).	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0281300	LOC_Os12g18360.2, LOC_Os12g18360.1	GR:0060627		50.4	GO:0015035 - protein disulfide oxidoreductase activity, GO:0005524 - ATP binding, GO:0009536 - plastid, GO:0006915 - apoptosis, GO:0045454 - cell redox homeostasis, GO:0043531 - ADP binding, GO:0009620 - response to fungus, GO:0009055 - electron carrier activity, GO:0022900 - electron transport chain, GO:0006662 - glycerol ether metabolic process, GO:0006952 - defense response	TO:0000521 - stomatal closure time, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
948	PI12	Pi12(t), Pi12(t)*, Pi12, Pi-12(t)	PYRICULARIA ORYZAE RESISTANCE 12	Magnaporthe grisea resistance-12, Blast resistance 12			12	Resistant  to several races of Pyricularia grisea. [RGN13:16]. PO:0009025; leaf. RIL10(Moroberekan (Japonica)):Map position (42.8-53 cM). 	 Tolerance and resistance - Disease resistance			GR:0060639			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000485 - sterility related trait, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
951	PI157	Pi157*, Pi157(t)*, Pi-157, Pi157	PYRICULARIA ORYZAE RESISTANCE 157	Pyricularia oryzae resistance in Moroberekan, Magnaporthe grisea resistance from Moroberekan, Blast resistance			12	Pyricularia oryzae resistance in Moroberekan.  Complete resistance to an Indian isolate, B157 of the blast fungus. PO:0009025; leaf. Original line is Moroberecan (Japonica). Map position (49.5-622.2 cM).	 Tolerance and resistance - Disease resistance			GR:0060657			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000480 - nutrient sensitivity, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
953	PI19	Pi19(t), Pi14, Pi19	PYRICULARIA ORYZAE RESISTANCE 19	Pyricularia oryzae resistance 19, Magnaporthe grisea resistance-19, Blast resistance 19			12	(Hayashi et al. 1997 Phytopathology).  Resistant to the race CHNO58-3-1 of Pyricularia grisea. [RGN14:11]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.Original line is Aichi Asahi (Japonica). Pi19(t) was mapped in the centromeric region on chromosome 12 with simple sequence repeat markers RM27937 and RM1337 (Koide et al. 2011).	 Tolerance and resistance - Disease resistance			GR:0060648			GO:0009620 - response to fungus	TO:0000494 - pigment content, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
954	PI20	Pi20, Pi20(t)	PYRICULARIA ORYZAE RESISTANCE 20	Pyricularia oryzae resistance 20, Magnaporthe grisea resistance-20, Blast resistance 20			12	(Imbe et al. 1997. RGN14:60). Resistant  to several races of Pyricularia grisea. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is RI24 (Indica). Map position (51.5-51.8 cM).	 Tolerance and resistance - Disease resistance			GR:0060649			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000495 - chlorophyll content, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
955	PI6	Pi6(t)*, Pi6, Pi-6(t), pi6(t)	PYRICULARIA ORYZAE RESISTANCE 6	Pyricularia oryzae resistance 6, Magnaporthe grisea resistance-6, Blast resistance 6			12	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Apura (Indic). Map position (32.6-63.2 cM). Pi-6(t) is lcated at about 15.3 cM from RG869 and about 18.4 cM from the isozyme marker, Sdh1.	 Tolerance and resistance - Disease resistance			GR:0060633			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000503 - leaf rolling time	PO:0009025 - vascular leaf 
956	PI62	Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t)	PYRICULARIA ORYZAE RESISTANCE 62	Pyricularia oryzae resistance from Yashiro-mochi, Magnaporthe grisea resistance from Yashiro-mochi, Magnaporthe grisea resistance-62, Blast resistance 62			12	Pyricularia oryzae resistance from Yashiro-mochi(Japonica). PO:0009025; leaf. Map position (12.2-26.0 cM). Mapping results suggest that Pi62(t) may correspond to the previously identified resistance gene Pi-ta (Wu et al. 1996).	 Tolerance and resistance - Disease resistance			GR:0060655			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000479 - acid sensitivity, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
957	PRO1	Pro1*, Pro1	PROLAMIN 1	Prolamin1, Prolamin 1, Prolamin-1			12	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060692			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
958	S15	S15(S10), S10	HYBRID STERILITY 15	Hybrid sterility15, Hybrid sterility 15, Hybrid sterility-15		S15-n, S15-du, S15-i	12	Semi-sterility expressed as an allelic interaction such as S15i/S15du. Segregation distortion in B1F1 due to the abortion of female gametes having S15i. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060822		51.0	GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
959	SDH1	Sdh1, Skd	SHIKIMATE DEHYDROGENASE 1	Shikimate dehydrogenase1, Shikimate dehydrogenase 1, Shikimate dehydrogenase-1	SHIKIMATE DEHYDROGENASE 1	Sdh1-1, Sdh1-2, Sdh1-3, Sdh1-4	12	Monomer. P(PAGE-TC,ST-H), L&C(ST-H).	 Biochemical character			GR:0060855		17.0	GO:0004764 - shikimate 5-dehydrogenase activity		
960	SPL1	Spl1, spl1(sl,bl2), sl, bl2, spl1	SPOTTED LEAF 1	spotted leaf1, spotted leaf 1, spotted leaf-1			12	Relatively large spots of red brown color appear on leaves from seedling stage and continue to heading time. [137] PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Lesion mimic			GR:0060902		21.0	GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
961	RL3	rl3(rl1), rl1, rl3, cul10	ROLLED LEAF 3	rolled leaf3, rolled leaf 3, rolled leaf-3, curl leaf-10			12	Leaf blade is rolled inside. Pale green in the area between veins, forming longitudinal stripes.[140] PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060766		30.0	GO:0030154 - cell differentiation	TO:0000492 - leaf shape, TO:0000085 - leaf rolling, TO:0000370 - leaf width	PO:0009025 - vascular leaf 
962	D33	d33(d B), dB, dwf29, d33	DWARF BONSAITO	bonsaito dwarf, dwarf-33			12	Dwarf. Many tillers with narrow and rolled leaves. PO:0009047; stem ; PO:0009025; leaf ; PO:0006343; axillary shoot. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060212		32.0	GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000346 - tiller number, TO:0000085 - leaf rolling, TO:0000207 - plant height, TO:0000370 - leaf width, TO:0000576 - stem length	PO:0006343 - axillary shoot system , PO:0009025 - vascular leaf , PO:0009047 - stem 
963	NAL3	nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS	NARROW LEAF 3	narrow leaf3, narrow leaf 3, narrow leaf-3, curl leaf-3, WUSCHEL related homeobox 3A, WUSCHEL-related homeobox 3, WUSCHEL-related homeobox 3A	WUSCHEL-LIKE HOMEOBOX 3A	nal3	12	Narrow leaves and grains. [131] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage. NAL2 on chromosomes 11 and NAL3 on chromosome 12 encode an identical OsWOX3A/OsNS protein that is homologous to NS of maize and PRS of Arabidopsis (Cho et al. 2013). Q33DK1. A2ZH47. OsNS1/OsNS2 and OsWOX3 (corredponding to Os11g0102100/Os12g0101600) in Cheng et al. 2014.  TO:0000784: inflorescence branch anatomy and morphology trait. AB218893.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Panicle, Mode of branching	Os12g0101600	LOC_Os12g01120.1	GR:0060567		37.0	GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009739 - response to gibberellin stimulus, GO:0010336 - gibberellic acid homeostasis, GO:0009651 - response to salt stress, GO:0048366 - leaf development, GO:0009414 - response to water deprivation	TO:0000655 - leaf development trait, TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000657 - spikelet anatomy and morphology trait, TO:0000402 - grain width, TO:0000346 - tiller number, TO:0000492 - leaf shape, TO:0000149 - seed width, TO:0001013 - lateral root number, TO:0002675 - gibberellic acid content, TO:0000166 - gibberellic acid sensitivity, TO:0000370 - leaf width	PO:0009025 - vascular leaf , PO:0001050 - leaf development stage 
964	POX2	Pox2	PEROXIDASE 2	Peroxidase2, Peroxidase 2, Peroxidase-2	PEROXIDASE 2	Pox2-0, Pox2-1 (Pox2-4C)	12	P&L(ST). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060686		40.0	GO:0004601 - peroxidase activity		
965	ACP2	Acp2	ACID PHOSPHATASE 2	Acid phosphatase2, Acid phosphatase 2, Acid phosphatase-2	ACID PHOSPHATASE 2	Acp2-0, Acp2-1 (Acp2-Fa)	12	P(PAGE-TC, ST-C), L(ST). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060007		73.0	GO:0003993 - acid phosphatase activity		
966	ACP1	Acp1	ACID PHOSPHATASE 1	Acid phosphatase1, Acid phosphatase 1, Acid phosphatase-1	ACID PHOSPHATASE 1	Acp1-0, Acp1-1 (Acp1--4), Acp1-2 (Acp1-+9), Acp1-3 (Acp1-+4)	12	Dimer. P(PAGE-TC, ST-C). 3 mijor and 3 minor bands appear in L & C (ST-C). Differential allele frequencies between indica and Japonica types.	 Biochemical character			GR:0060006		67.0	GO:0003993 - acid phosphatase activity		
967	AMP6	Amp6(t)*, Amp6	AMINOPEPTIDASE 6	Aminopeptidase6, Aminopeptidase 6, Aminopeptidase-6	AMINOPEPTIDASE 6				 Biochemical character			GR:0060041			GO:0004177 - aminopeptidase activity		
969	ACP4	Acp4	ACID PHOSPHATASE 4	Acid phosphatase4, Acid phosphatase 4, Acid phosphatase-4	ACID PHOSPHATASE 4	Acp4-1, Acp4-2	7	Monomer. P(ST-C).	 Biochemical character			GR:0060009		116.0	GO:0003993 - acid phosphatase activity		
970	SSV	Ssv*, Dwf44, Ssv	SHORT STATURE ONLY IN THE VEGETATIVE PHASE	short stature only in the vegetative phase, Short stature (vegetative type)			7	Short stature(vegetative type). PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage.	 Vegetative organ - Culm			GR:0060927		23.0	GO:0007275 - multicellular organismal development	TO:0000576 - stem length	PO:0009047 - stem 
971	S17	S17(t)*	HYBRID STERILITY 17	Hybrid sterility17, Hybrid sterility 17, Hybrid sterility-17			12	S17 causes female gamete abortion. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060824			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009046 - flower 
972	MS1P	ms1P*	PHOTOPERIOD-SENSITIVE MALE STERILITY 1	photoperiod-sensitive male sterility1					 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development, GO:0009648 - photoperiodism	TO:0000009 - genic male sterility-photoperiod sensitive	
973	MS2P	ms2P*	PHOTOPERIOD-SENSITIVE MALE STERILITY 2	photoperiod-sensitive male sterility2					 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development, GO:0009648 - photoperiodism	TO:0000009 - genic male sterility-photoperiod sensitive	
974	PI	Pi(t)*, Pi(t)	PYRICULARIA ORYZAE RESISTANCE	Pyricularia oryzae resistance, Magnaporthe grisea resistance, Blast resistance			4	PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. Original line is P167 (Indica).	 Tolerance and resistance - Disease resistance			GR:0060629			GO:0009620 - response to fungus	TO:0000470 - vascular tissue related trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
975	SHL1	shl1, sh1	SHOOTLESS 1	shootless 1, shootless-1		shl1-1, shl1-2, shl1-3	12	In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Scutellum and radicle are normal. Modifies the expression domain of homeobox gene OSH1. Phenotypes of the two alleles are the same. PO:0009009; embryo ; PO:0020144; apical meristem. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060879			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0020144 - apical meristem 
976	SHL2	shl2, SHL2, sh2, OsRDR6, RDR6	SHOOTLESS 2	shootless 2, shootless-2, Probable RNA-dependent RNA polymerase SHL2, Protein SHOOTLESS 2, SHOOTLESS2, RNA-dependent RNA polymerase 6, rod-like lemma	PROBABLE RNA-DEPENDENT RNA POLYMERASE SHL2	shl2-1, shl2-2, shl2-3, shl2-4, shl2-5, shl2-6, shl2-7, shl2-8, shl2-9, shl2-10, shl2-11, shl2-12, shl2-rol, rol, rdr6, rdr6-11, osrdr6-1, osrdr6	1	In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Scutellum and radicle are normal. Extremely reduce the expression domain of homeobox gene OSH1. EC=2.7.7.48 RNA-dependent RNA polymerase. AB353923. Q8LHH9. PO:0009009; embryo ; PO:0020144; apical meristem. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. LOC_Os01g34350. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Vegetative organ - Shoot apical meristem(SAM),  Seed - Morphological traits - Embryo,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0527600	LOC_Os01g34350.1	GR:0060880			GO:0006950 - response to stress, GO:0003968 - RNA-directed RNA polymerase activity, GO:0031047 - gene silencing by RNA, GO:0003723 - RNA binding, GO:0009266 - response to temperature stimulus, GO:0016246 - RNA interference, GO:0009888 - tissue development, GO:0005739 - mitochondrion, GO:0010492 - maintenance of shoot apical meristem identity, GO:0009737 - response to abscisic acid stimulus, GO:0051607 - defense response to virus, GO:0009887 - organ morphogenesis, GO:0030422 - production of siRNA involved in RNA interference	TO:0000432 - temperature response trait, TO:0000164 - stress trait, TO:0000615 - abscisic acid sensitivity, TO:0002718 - awn anatomy and morphology trait, TO:0000274 - floret anatomy and morphology trait, TO:0000064 - embryo related trait, TO:0000148 - viral disease resistance	PO:0009009 - plant embryo , PO:0020144 - apical meristem 
977	SHL3	shl3, sh3	SHOOTLESS 3	shootless 3, shootless-3				In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Radicle is differentiated but rooting is expressed only in seed maturity process and becomes necrotic. Expression of homeobox gene, OSH1 is normal. PO:0009009; embryo ; PO:0020144; apical meristem ; PO:0020031; radicle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060881			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0020031 - radicle , PO:0020144 - apical meristem 
978	SHL4	shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2	SHOOTLESS 4	shootless 4, shootless-4, Protein argonaute 7, Protein SHOOTLESS 4, Protein SHOOT ORGANIZATION 2, SHOOT ORGANIZATION2, ARGONAUTE 7, Argonaute 7	ARGONAUTE 7	shl4-1, shl4-2, sho2	3	LOC_Os03g33650. EF486281. AB353924. Q75HC2. In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Scutellum and radicle are normal. Expression of homeobox gene, OSH1 is normal. Morphology of embryo of the mutant is the same as shl1 or shl2. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. a predicted lethal-phenotype gene in Lloyd et al. 2015. TO:0006064: rolled leaf.	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Leaf,  Seed - Morphological traits - Embryo	Os03g0449200	LOC_Os03g33650.1	GR:0060882			GO:0010492 - maintenance of shoot apical meristem identity, GO:0009887 - organ morphogenesis, GO:0009888 - tissue development, GO:0003676 - nucleic acid binding, GO:0016246 - RNA interference	TO:0000064 - embryo related trait, TO:0002681 - leaf curling, TO:0000206 - leaf angle	PO:0009009 - plant embryo , PO:0020144 - apical meristem 
2000	V12	v12(t)	VIRESCENT 12	virescent12, virescent 12, virescent-12				This mutant exhibits fine white stripes during seedling stage. At flowering, the white stripes appear again on the leaf sheaths of flagleaf and the uppermost internode shows milky white color. PO:0020142; stem internode ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060991			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000426 - internode color, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf , PO:0020142 - stem internode 
2001	GLU4	glu4-c(t), glu4(t)*, glu11	GLUTELIN 4	lack of glutelin subunit(alpha-2)-4, rice glutelin-11	GLUTELIN 4		1	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060393		107.0	GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
2002	COL	col	COLLARLESS	collarless			4	This mutant lacks the collar of leaf. PO:0020105; ligule.	 Vegetative organ - Leaf			GR:0060173		91.0	GO:0007275 - multicellular organismal development	TO:0000335 - ligule shape	PO:0020105 - ligule 
2004	ALV	al-v(t)*, yl, al11	VARIEGATED ALBINO	variegated albino, albino-11, albino11, albino 11			4	Might be caused by a mutation at tha locus al5 or al7 on the same chromosome 4. PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060030			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
2005	AN5	An5(t), an5, An5(t)*	AWN 5	Awn-5, awn-5			3	An5(t) might be the same lucus as An3. PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061159			GO:0030154 - cell differentiation, GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2006	BA*	Ba*, B(a)	_	Beaded grain arrangement a				complementary genes. PO:0006322; third order inflorescence branch ; PO:0009049; inflorescence. 	 Reproductive organ - Inflorescence			GR:0060066			GO:0007275 - multicellular organismal development	TO:0000142 - secondary branching of inflorescence, TO:0000089 - panicle type	PO:0006322 - second order inflorescence branch , PO:0009049 - inflorescence 
2007	BUC	Buc*, Buc	BIG UPPERMOST CULM	Big uppermost culm			8	Incompletely dominant gene, makes larger diameter of the uppermost culm. PO:0009047; stem ; PO:0020142; stem internode. GRO:0007048; 04-stem elongation stage.	 Vegetative organ - Culm			GR:0060104			GO:0009825 - multidimensional cell growth	TO:0000132 - basal internode diameter, TO:0000339 - stem thickness	PO:0009047 - stem , PO:0020142 - stem internode 
2008	CHT	Cht(t)*	CLASS III CHITINASE HOMOLOGUES	Class III chitinase homologues (seven cDNAs)	CLASS III CHITINASE HOMOLOGUES		1		 Biochemical character						GO:0004568 - chitinase activity		
2009	CI	CI*	CI ANTHOCYANIN REGULATORY GENE	rice CI anthocyanin regulatory gene					 Biochemical character						GO:0009718 - anthocyanin biosynthetic process		
2010	[CMS-DRW21018]	[cms-DRW21018]*, [cms-DRW21018]	CYTOPLASMIC MALE STERILITY DRW21018	'DRW21018' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060148			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
2011	[CMS-DRW21030]	[cms-DRW21030]*, [cms-DRW21030]	CYTOPLASMIC MALE STERILITY DRW21030	'DRW21030' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060149			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
2012	[CMS-DRW21039]	[cms-DRW21039]*, [cms-DRW21039]	CYTOPLASMIC MALE STERILITY DRW21039	'DRW21039' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060150			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
2013	[CMS-RPW21111]	[cms-RPW21111]*, [cms-DPW21111], [cms-RPW21111]	CYTOPLASMIC MALE STERILITY RPW21111	'RPW21111' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060157			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
2014	[CMS-VN1]	[cms-VN1]*, [cms-VN1]	CYTOPLASMIC MALE STERILITY VN 1	'VN1' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060165			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
2016	CRL1	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1	CROWN ROOTLESS 1	crown rootless-1, CROWN ROOTLESS1, Crown rootless1, ADVENTITIOUS ROOTLESS1, ADVENTITIOUS ROOTLESS 1, lateral organ boundaries domain 3-2	LATERAL ORGAN BOUNDARIES (LOB) CLASS I	arl1, crl1	3	Mapped on the short arm of chromosome 3. Lack a crown root when rooting of a seed.CRL1 encodes a member of the plant-specific ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES protein family.The recessive mutant, crl1, is defective in crown root formation.MNU induced mutant from Taichung 65. LOB domain protein. PO:0009005; root. GRO:0007047; 02-seedling. AB200234. AY736375. ARL1 is an auxin responsive factor involved in auxin-mediated dedifferentiation. KC609184-KC609196 (O. sativa and wild rice species, partial cds). GO:1990110: callus formation. ortholog of Arabidopsis LBD17/LBD29.	 Vegetative organ - Root	Os03g0149100	LOC_Os03g05510.1	GR:0060175			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000428 - callus induction, TO:0000084 - root number, TO:0000227 - root length	PO:0009005 - root 
2017	CRL2	crl2*, crl2	CROWN ROOTLESS 2	crown rootless-2, CROWN ROOTLESS2			1	Both the initiation of and subsequent growth of crown root primordia are impaired. This mutant shows many abnormal morphological characters besides the defect in the formation of crown roots. crl2 is located within 0.8cM between C2690-2 and C2134-2. PO:0009005; root. GRO:0007047; 02-seedling.	 Vegetative organ - Root			GR:0060176			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000084 - root number, TO:0000227 - root length	PO:0009005 - root 
2018	D61	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1	DWARF 61	dm-type dwarf, dwarf-61, DWARF61, BRASSINOSTEROID INSENSITIVE 1, BR receptor BRASSINOSTEROID INSENSITIVE1, BRASSINOSTEROID-INSENSITIVE1, brassinosteroid insensitive 1		d61-1, d61-2, d61-3, d61-4, d61-5, d61-6, d61-7, d61-8, d61-9, d61-10, Osbri1, bri1, d61-1N	1	LOC_Os01g52050. BAB68053. GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007059; 2.01-first leaf through coleoptile. This gene functions in various growth and developmental processes in rice, including internode elongation, bending of the lamina joint, and skotomorphogenesis. Complementing to d61 dwarf gene, wild type of OsBRI1 recovers normal phenotype. extra sporogenous cells-like.  brassinosteroid receptor. a rice ortholog of Arabidopsis BRI1/SR160.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os01g0718300	LOC_Os01g52050.1	GR:0060226			GO:0006468 - protein amino acid phosphorylation, GO:0009647 - skotomorphogenesis, GO:0004674 - protein serine/threonine kinase activity, GO:0004903 - growth hormone receptor activity, GO:0005886 - plasma membrane, GO:0009729 - detection of brassinosteroid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0001578 - microtubule bundle formation, GO:0005524 - ATP binding, GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid, GO:0009742 - brassinosteroid mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0016049 - cell growth	TO:0002688 - leaf lamina joint bending, TO:0002677 - brassinosteroid sensitivity, TO:0000085 - leaf rolling, TO:0000040 - panicle length, TO:0000172 - jasmonic acid sensitivity, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0000206 - leaf angle, TO:0000576 - stem length, TO:0000145 - internode length, TO:0000397 - grain size	PO:0006347 - stem intercalary meristem , PO:0009047 - stem , PO:0020142 - stem internode , PO:0020104 - leaf sheath , PO:0020033 - coleoptile 
2019	DH	D-h(t)*, Dwf43, D-h	DOMINANT DWARF	Dominant dwarf		d-h	1	Dominant gene. All internodes and panicle are reduced in length to about 70%. The grain become smaller and rounder. PO:0009047; stem. The 63-bp deletion identified in the LOC_Os01g10460 gene was responsible for the dwarf phenotype of the HD1 (Pia et al. 2014). LOC_Os01g10460. 	 Vegetative organ - Culm,  Seed - Morphological traits	Os01g0201275 	LOC_Os01g10460.1	GR:0060227			GO:0009740 - gibberellic acid mediated signaling, GO:0007275 - multicellular organismal development	TO:0002730 - grain shape, TO:0000397 - grain size, TO:0000166 - gibberellic acid sensitivity, TO:0000287 - brown rice shape, TO:0000391 - seed size, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000576 - stem length	PO:0009047 - stem , PO:0009049 - inflorescence 
2020	DEC	dec*, dec	DECUSSATE	decussate (phyllotactic abnormality), decussate				PO:0020105; ligule.	 Vegetative organ - Leaf			GR:0060230			GO:0007275 - multicellular organismal development	TO:0000335 - ligule shape	PO:0020105 - ligule 
2022	DU6A	du6a(t)*, du6, du6a	DULL ENDOSPERM 6A	dull endosperm-6a, dull endosperm-6				duplicate. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060266			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000105 - dull endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
2023	DU6B	du6b(t)*, du6b, du7	DULL ENDOSPERM 6B	dull endosperm-6b, dull endosperm-7				PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060267			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
2024	DU7	Du7(t)*, Du7, Du8	DULL ENDOSPERM 7	Dull endosperm-7, Dull endosperm-8				PO:0020091; male gametophyte ; PO:0009089; endosperm. GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060268			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000105 - dull endosperm, TO:0000053 - pollen sterility, TO:0000196 - amylose content	PO:0009089 - endosperm , PO:0020091 - obsolete microgametophyte 
2025	EML2	eml2*, eml2	EMBRYOLESS 2	embryoless2, embryoless 2, embryoless-2				PO:0009009; embryo.	 Seed - Morphological traits - Embryo			GR:0060293			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis, GO:0009266 - response to temperature stimulus	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
2026	ES1	Es1(t)*, Es1	EXTRUDING STIGMA 1	Extruding stigma-1			6	PO:0006318; floret (sensu Poaceae) ; PO:0006497; stigma epidermis (sensu Poaceae). GRO:0007044; 06-heading stage.	 Seed - Physiological traits - Storage substances			GR:0061066			GO:0007275 - multicellular organismal development, GO:0030154 - cell differentiation	TO:0000044 - stigma exsertion	PO:0009082 - spikelet floret , PO:0006061 - stigma epidermis 
2027	FES4	fes4*, fes4	PHOTOPERIOD AND TEMPERATURE SENSITIVE FEMALE STERILITY	photoperiod and temperature sensitive female sterility, female sterile 4, female sterile-4				PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009062; gynoecium.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060328			GO:0007275 - multicellular organismal development	TO:0000229 - photoperiod sensitivity, TO:0000358 - female sterility, TO:0000432 - temperature response trait	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009062 - gynoecium 
2028	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77	LACK OF ALPHA-GLOBULIN	lack of alpha-globulin, alpha-globulin, 26 kDa globulin, 19 kDa globulin, 19kD globulin, endosperm-specific gene 77, Globulin23	ALPHA-GLOBULIN		5	Lacks alpha-globulin in a seed protein. PO:0009010; seed. D50643. P29835. AY427575(promoter region). X63990. L12252. LOC_Os05g41970. Globulin23 in Huang et al. 2016.	 Seed - Morphological traits - Embryo,  Seed - Physiological traits - Storage substances	Os05g0499100	LOC_Os05g41970.1	GR:0060370			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait, TO:0002661 - seed maturation	PO:0009010 - seed 
2029	GLE4	gle4*, gle4	GLOBULAR EMBRYO 4	globular embryo4, globular embryo 4, globular embryo-4		gle4-1, gle4-2		This mutant does not differentiate any embryonic organs, but stays in globular morphology even fully matured. PO:0009009; embryo.	 Seed - Morphological traits - Embryo			GR:0060375			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
2030	GLH9	Glh9(t)*, Glh9	GREEN LEAFHOPPER RESISTANCE 9	Green leafhopper resistance-9(t), Green leafhopper resistance-9, Green leafhopper resistance 9				Resistant to green leafhopper. PO:0009011; plant structure ; PO:0000003; whole plant.  the dominant gene for resistance to green leafhopper in IR28.	 Tolerance and resistance - Insect resistance			GR:0060384			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2031	GM5	Gm5*, Gm5	GALL MIDGE RESISTANCE 5	Gall midge resistance5, Gall midge resistance 5, Gall midge resistance-5			12	PO:0009011; plant structure ; PO:0000003; whole plant. Gm5 is mapped within 13.2 Mb region on chromosome 12 between  RM101 and RM309 (Dubey et al. 2010).	 Tolerance and resistance - Insect resistance			GR:0060421			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2032	GM6	Gm6(t), Gm6	GALL MIDGE RESISTANCE 6	Gall midge resistance6, Gall midge resistance 6, Gall midge resistance-6			4	Resistant to Chinese GM biotypes 1,2,3,and 4 but susceptible to Indian GM biotype 1,2,3, and 4. This gene is located on the chromosome 4 flanked by markers RG214 and RG476. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060422			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2033	GM7	Gm7*, Gm7	GALL MIDGE RESISTANCE 7	Gall midge resistance-7			4	Resistant to biotype 1,2 and 4 of gall midge (Orseolia oryzae). Gm7 is located on chromosome 4 and tightly linked with Gm2. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0061087			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2034	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8, qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H	Heading date (QTL)-5(t)	"Heading date (QTL)-5(t), Heading date 5, HAP3H SUBUNIT OF CCAAT-BOX BINDING COMPLEX, days to heading8, days to heading on chromosome 8, NUCLEAR FACTOR-Y subunit B11, NUCLEAR FACTOR-Y subunit NF-YB11, rice heterosis 8, \"GRAIN YIELD, PLANT HEIGHT AND HEADING DATE 8\", Carbon Assimilation Rate 8, NF-YB subunit 11, NF-YB family 11"	OsHAP3 SUBUNIT OF A CCAAT-BOX BINDING PROTEIN	ghd8, dth8	8	AB693200-AB693204. AB288039. HM775396, HM775397. Os08g0174500 which encodes a histone-like CCAAT-box binding transcription factor suggested that the ORF would be tentatively referred to as the first strong candidate gene for qHY-8, a pleiotropic QTL for heading date and yield-related traits. Also this ORF was annotated in RiceGAAS as the candidate gene of Hd5, a gene controlling heading date in rice.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Other	Os08g0174500	LOC_Os08g07740.1				GO:0050832 - defense response to fungus, GO:0015979 - photosynthesis, GO:0010119 - regulation of stomatal movement, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009648 - photoperiodism, GO:0043565 - sequence-specific DNA binding, GO:0048573 - photoperiodism, flowering, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:2000028 - regulation of photoperiodism, flowering	TO:0000439 - fungal disease resistance, TO:0000543 - leaf nitrogen content, TO:0000522 - stomatal conductance, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0002759 - grain number, TO:0000050 - inflorescence branching, TO:0002616 - flowering time, TO:0000396 - grain yield	
2035	HSA2	hsa2(t)*, hsa2(t), hst50	F2 STERILITY-2(T)	F2 sterility-2(t), hybrid sterility-50		hsa2-AS	8	This gene causes, complementarily with hsa1(t) , F2 sterility in the japonica and india cross. This gene is located on chromosome 8 in the vicinity of RFLP marker G104. f2 sterility in Japonica. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060806			GO:0007275 - multicellular organismal development	TO:0000046 - f2-generation sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2036	HWE1	hwe1(t)*, hwe1	HYBRID WEAKNESS E1	hybrid weakness e1, hybrid weakness-e1			12	This gene causes hybrid weakness complementarily with hwe2. The hwe1 gene is located on chromosome 12  flanked by RFLP markers R1869 and S1437. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060463			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000355 - heterosis, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
2037	ITH	Ith*, Ith	INHIBITOR FOR DIFFICULT	Inhibitor for difficult threshing (easy threshing)				PO:0009049; inflorescence. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Shattering			GR:0060487			GO:0009838 - abscission	TO:0000406 - panicle threshability	PO:0009049 - inflorescence 
2038	LH	Lh(t)*, lh(t)	LATE HEADING	Late heading			7	PO:0009049; inflorescence ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060500		65.0	GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000469 - days to maturity, TO:0000137 - days to heading	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009049 - inflorescence 
2039	LMX	lmx*, lmx	LONG LEMMA	long lemma				PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060508			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea 
2040	LRT1	Lrt1*, Lrt1, Lrt 1	DEFICIENCY OF LATERAL ROOTS	Deficiency of lateral roots, Lateral root-1, LATERAL ROOT LESS1				No lateral root on the roots of young plant. Dominant gene. PO:0009005; root.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance			GR:0060513			GO:0007275 - multicellular organismal development, GO:0010311 - lateral root formation, GO:0009629 - response to gravity, GO:0051301 - cell division, GO:0009958 - positive gravitropism, GO:0009501 - amyloplast	TO:0002693 - gravity response trait, TO:0000257 - root branching, TO:0000227 - root length	PO:0009005 - root 
2043	MR1	mr1*, mr1	MULTIPLE RADICLE 1	multiple radicle-1				PO:0009006; shoot ; PO:0000003; whole plant.	 Seed - Morphological traits - Embryo			GR:0060535			GO:0009790 - embryonic development	TO:0000250 - vigor related trait, TO:0000019 - seedling height	PO:0000003 - whole plant , PO:0009006 - shoot system 
2044	MS-H(T)*	ms-h(t)*, MS-H, ms-h, ms70	MALE STERILE-H	male sterile-h, male sterile-70			9	PO:0009066; anther ; PO:0009046; flower ; PO:0009089; endosperm.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060561			GO:0007275 - multicellular organismal development	TO:0000067 - genic male sterility-thermo sensitive, TO:0000266 - chalky endosperm, TO:0000437 - male sterility	PO:0009046 - flower , PO:0009066 - anther , PO:0009089 - endosperm 
2048	DIM*	OsDIM*, OsDIM, DIM, dim, OSDIM	RICE DIM PROTEIN	Rice DIM protein, rice diminuto	RICE DIM PROTEIN		10		 Vegetative organ - Culm			GR:0060587			GO:0004499 - flavin-containing monooxygenase activity		
2049	FAD3	OsFAD3*, OsFAD3	OMEGA-3 FATTY ACID DESATURASE 3	w-3 fatty acid desaturase-3	OMEGA-3 FATTY ACID DESATURASE 3		11		 Biochemical character			GR:0060588			GO:0004768 - stearoyl-CoA 9-desaturase activity		
2050	FADX	OsFADX*, OsFADX	OMEGA-3 FATTY ACID DESATURASE X	w-3 fatty acid desaturase-X	OMEGA-3 FATTY ACID DESATURASE X		12		 Biochemical character			GR:0060589			GO:0004768 - stearoyl-CoA 9-desaturase activity		
2051	FADY	OsFADY*, OsFADY	OMEGA-3 FATTY ACID DESATURASE Y	w-3 fatty acid desaturase-Y	OMEGA-3 FATTY ACID DESATURASE Y		11		 Biochemical character			GR:0060590			GO:0004768 - stearoyl-CoA 9-desaturase activity		
2054	PDC1	pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2	PYRUVATE DECARBOXYLASE 1	pyruvate decarboxylase-1, Pyruvate decarboxylase isozyme 1, Pyruvate Decarboxylase 1	PYRUVATE DECARBOXYLASE 1		5	This gene is located between two RFLP markers, BCD454A and RZ67 on chromosome 5. EC=4.1.1.1 Q0DHF6(japonica). A2Y5L9(indica). U07339. AB040742, U26660. D10413. D22926. a Jasmonic acid (JA)-responsive gene.	 Biochemical character,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os05g0469600	LOC_Os05g39310.1	GR:0060607			GO:0010229 - inflorescence development, GO:0030976 - thiamin pyrophosphate binding, GO:0009536 - plastid, GO:0000287 - magnesium ion binding, GO:0004737 - pyruvate decarboxylase activity	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
2055	PDC2	pdc2*, pdc2	PYRUVATE DECARBOXYLASE 2	pyruvate decarboxylase-2, Pyruvate decarboxylase isozyme 2	PYRUVATE DECARBOXYLASE 2		3	This gene encodes the first enzyme of anaerobic fermentation pathway, which plays an important role under flooding conditions. This is located between two RFLP markers, RZ329 and RZ313 on chromosome 3. EC=4.1.1.1 A2XFI3(indica). Q10MW3(japonica). U27350. LOC_Os03g18220.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0293500	LOC_Os03g18220.2, LOC_Os03g18220.1	GR:0060608			GO:0000287 - magnesium ion binding, GO:0030976 - thiamin pyrophosphate binding, GO:0046688 - response to copper ion, GO:0004737 - pyruvate decarboxylase activity	TO:0000021 - copper sensitivity	
2056	PDC3	pdc3*, pdc3, OsPDC3, OsSTA202	PYRUVATE DECARBOXYLASE 3	pyruvate decarboxylase-3, pyruvate decarboxylase 3, Pyruvate decarboxylase isozyme 3	PYRUVATE DECARBOXYLASE 3		7	This gene is located to the bottom of chromosome 7 distal to RFLP marker RG351. EC=4.1.1.1 A2YQ76(indica). Q0D3D2(japonica). U07338.  LOC_Os07g49250. a mature anther-preferentially expressed gene. AB111050.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0693100	LOC_Os07g49250.1	GR:0060609			GO:0006066 - alcohol metabolic process, GO:0004737 - pyruvate decarboxylase activity, GO:0000287 - magnesium ion binding, GO:0030976 - thiamin pyrophosphate binding		PO:0009066 - anther , PO:0025281 - pollen , PO:0009049 - inflorescence 
2057	PI21	pi21, rMg40	PYRICULARIA ORYZAE RESISTANCE 21	Pyricularia oryzae resistance-21 (field resistance), Pyricularia oryzae resistance-21, Magnaporthe grisea resistance-21 (field resistance), Magnaporthe grisea resistance-21.		pi21, Pi21	4	Field resistance to rice blast in testing nursery under natural conditions. One of QTLs controlling field resistance against rice blast of Japanese upland rice was mapped between RFLP markers G271 and G317 of chromosome 4. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.AB430852, AB430853, and AB430854. Original line is Owarihatamochi (Japonica). pi21 is a recessive gene. LOC_Os04g32850.	 Tolerance and resistance - Disease resistance	Os04g0401000	LOC_Os04g32850.3, LOC_Os04g32850.2, LOC_Os04g32850.1	GR:0060650			GO:0009620 - response to fungus	TO:0000497 - fertility restoration trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
2058	PI21	Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t)	PYRICULARIA ORYZAE RESISTANCE 21	Pyricularia oryzae resistance-21, Magnaporthe grisea resistance-21, Blast resistance 21			12	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Sweon365 (Japonica). Map position (43.4-59.6 cM).	 Tolerance and resistance - Disease resistance			GR:0060651			GO:0009620 - response to fungus	TO:0000496 - carotenoid content, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
2059	PI22	Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t)	PYRICULARIA ORYZAE RESISTANCE 22	Pyricularia oryzae resistance-22, Magnaporthe grisea resistance-22, Blast resistance 22			6	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Suweon365 /Sweon (Japonica). Map position (38.7-41.9 cM).	 Tolerance and resistance - Disease resistance			GR:0060652			GO:0009620 - response to fungus	TO:0000498 - female fertility restoration trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
2060	PI23	Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t)	PYRICULARIA ORYZAE RESISTANCE 23	Pyricularia oryzae resistance-23, Magnaporthe grisea resistance-23, Blast resistance 23			5	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Suweon365/Sweon365 (Japonica). Map position (59.3-99.5 cM).	 Tolerance and resistance - Disease resistance			GR:0060653			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000499 - flower anatomy and morphology trait, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
2061	PI44	Pi44(t)*, Pi44(t), Pi44, Pi-44(t)	PYRICULARIA ORYZAE RESISTANCE 44	Pyricularia oryzae resistance-44, Magnaporthe grisea resistance-44, Blast resistance 44			11	PO:0009025; leaf. Original line is RIL29 (Moroberekan(Japonica)). Map position (91.4-117.9 cM).	 Tolerance and resistance - Disease resistance			GR:0060654			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000501 - spikelet weight	PO:0009025 - vascular leaf 
2062	PRT	Prt*, Prt	PURPLE ROOT	Purple root				Purple red colored root. This gene distributes the anthocyanin produced by complimentary genes A and C over the root. Corresponding to P gene for the top part of a plant. PO:0009005; root.	 Coloration - Anthocyanin			GR:0060701			GO:0009812 - flavonoid metabolic process	TO:0000065 - root color	PO:0009005 - root 
2063	RA	Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2	TRANSCRIPTIONAL ACTIVATOR A	Rice R gene (Anthocyanin biosynthesis) : a, basic helix loop helix 13, Rice R gene (Anthocyanin biosynthesis)-a, GLABRA3A, GLABRA 3A	TRANSCRIPTIONAL ACTIVATOR A		4	U39860 (Genetics. 1996 Mar;142)3):1021-31.). AB021079. PO:0009088: seed coat, PO:0009089: endosperm. GRO:0007044; 06-heading stage ; GRO:0007042: 08-dough stage ; GRO:0007045: 09-mature grain stage ; GRO:0007046: 07-milk stage. an R/B-type regulatory gene. OSB1 is an allele of the functional rice Ra1 gene previously reported by Hu et al. (1996) (Shih et al. 2008). OSB1 (Os04g0557800) and OSB2 (Os04g0557500) are the major components of the Plw allele (Sakamoto et al. 2001). LOC_Os04g47080. a homologue of Arabidopsis transcription factor GL3. OsB2 in Kim et al. 2018,	 Coloration - Anthocyanin,  Seed - Morphological traits	Os04g0557800	LOC_Os04g47080.1	GR:0060719			GO:0031542 - positive regulation of anthocyanin biosynthetic process, GO:0005739 - mitochondrion, GO:0009536 - plastid, GO:0009812 - flavonoid metabolic process	TO:0000071 - anthocyanin content, TO:0000487 - endosperm color, TO:0000190 - seed coat color	PO:0007632 - seed maturation stage , PO:0009088 - seed coat , PO:0009089 - endosperm 
2064	RB	Rb, Rb*, bhlh165, OsbHLH165	TRANSCRIPTIONAL ACTIVATOR B	Rice R gene : b R gene family, Rice R gene-b, basic/helix-loop-helix 165, basic helix loop helix 165	TRANSCRIPTIONAL ACTIVATOR B		1	U39866 (Genetics. 1996 Mar;142(3):1021-31.). PO:0009088; seed coat ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin	Os01g0577300	LOC_Os01g39580.1	GR:0060720			GO:0045449 - regulation of transcription, GO:0009812 - flavonoid metabolic process, GO:0005634 - nucleus, GO:0005739 - mitochondrion, GO:0030528 - transcription regulator activity	TO:0000190 - seed coat color, TO:0000487 - endosperm color	PO:0009088 - seed coat , PO:0009089 - endosperm 
2065	RAD	rad, rad*, OsRAD, GEN1, OsGEN-L, OsGEN1	REDUCED ADH ACTIVITY	reduced ADH activity, Flap endonuclease GEN-like 1, Protein OsGEN-like, OsGEN-like	FLAP ENDONUCLEASE GEN-LIKE 1	osgen1	9	EC=3.1.-.- Q64MA3. AB158320, AB194139. PO:0009011; plant structure ; PO:0000003; whole plant. PO:0006452; microspore (sensu Poaceae) ; PO:0009005; root ; PO:0009025; leaf. GRO:0007018; 4.01-pollen development. LOC_Os09g35000. Yen1/GEN1 ortholog in rice.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os09g0521900	LOC_Os09g35000.1	GR:0080026			GO:0009556 - microsporogenesis, GO:0006330 - single-stranded DNA binding, GO:0006281 - DNA repair, GO:0005634 - nucleus, GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0048256 - flap endonuclease activity, GO:0009555 - pollen development, GO:0000287 - magnesium ion binding, GO:0007130 - synaptonemal complex assembly, GO:0007126 - meiosis, GO:0006302 - double-strand break repair, GO:0006260 - DNA replication, GO:0000724 - double-strand break repair via homologous recombination, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0003690 - double-stranded DNA binding, GO:0003697 - single-stranded DNA binding	TO:0000053 - pollen sterility, TO:0000060 - aborted uni-nucleate stage, TO:0000437 - male sterility	PO:0000003 - whole plant , PO:0020048 - microspore , PO:0009005 - root , PO:0009011 - plant structure , PO:0009025 - vascular leaf 
2066	RAL2	ral2*, ral2	RADICLELESS 2	radicleless2, radicleless 2, radicleless-2				This mutant fails to develop a radicle. PO:0009009; embryo ; PO:0009005; root.	 Vegetative organ - Root			GR:0060723			GO:0009790 - embryonic development	TO:0000064 - embryo related trait, TO:0000257 - root branching	PO:0009005 - root , PO:0009009 - plant embryo 
2067	RF6	Rf6(t), Rf6(t)*, Rf5, Rf6	RESTORATION OF FERTILITY 6	Pollen fertility restoration-6			10	Pollen fertility restoration for WA cytoplasm, Pollen fertility restoration for WA and HL cytoplasms. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060745			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
2068	RFWA2	RfWA2(Rf(u)), RfWA2*, Rf(u), Rf8	SMALL GTP-BINDING PROTEIN 1	Pollen fertility restoration-8	SMALL GTP-BINDING PROTEIN 1		10	Pollen fertility restoration for WA cytoplasm. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060746			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
2069	RFA1	rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1	ELONGATION FACTOR 1A1	rice elongation factor 1A (eEFIA)-1, rice elongation factor 1A-1, ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha, eukaryotic translation elongation factor 1A	ELONGATION FACTOR 1A		3	LOC_Os03g08010.1. AF030517. O64937. D29703. Elongation factor Tu.	 Biochemical character	Os03g0177400	LOC_Os03g08010.1	GR:0060749			GO:0006414 - translational elongation, GO:0003746 - translation elongation factor activity, GO:0003924 - GTPase activity, GO:0005737 - cytoplasm, GO:0005525 - GTP binding		
2070	RFA2	rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna	ELONGATION FACTOR 1A2	rice elongation factor 1A (eEFIA)-2, rice elongation factor 1A-2, ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha	ELONGATION FACTOR 1A		3	O64937. D15973.	 Biochemical character	Os03g0178000		GR:0060750			GO:0005737 - cytoplasm, GO:0003746 - translation elongation factor activity, GO:0003924 - GTPase activity, GO:0006414 - translational elongation, GO:0005525 - GTP binding		
2071	RFA3	rfa3*, REFA3, refa3	ELONGATION FACTOR 1A3	rice elongation factor 1A (eEFIA)-3, rice elongation factor 1A-3, ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha	ELONGATION FACTOR 1A		3	O64937.	 Biochemical character	Os03g0177900	LOC_Os03g08050.1	GR:0060751			GO:0005737 - cytoplasm, GO:0005525 - GTP binding, GO:0003746 - translation elongation factor activity, GO:0003924 - GTPase activity, GO:0006414 - translational elongation		
2072	RFA4	rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha	ELONGATION FACTOR 1A4	rice elongation factor 1A (eEFIA)-4, rice elongation factor 1A-4, ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha, Eukaryotic elongation factor 1-alpha, elongation factor 1 alpha	ELONGATION FACTOR 1A		3	O64937. GQ848073.	 Biochemical character	Os03g0177500	LOC_Os03g08020.1	GR:0060752			GO:0006413 - translational initiation, GO:0005737 - cytoplasm, GO:0003746 - translation elongation factor activity, GO:0006414 - translational elongation, GO:0003924 - GTPase activity, GO:0005525 - GTP binding		
2073	RHW	Rhw*, Rhw	HYBRID WEAKNESS RESTORATION	Hybrid weakness restoration				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060754			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
2074	LIM15	RiLIM15*, RiLIM15	LIM 15	Rice LIM15 (Meiosis specific gene), Rice LIM15	LIM 15				 Biochemical character			GR:0060757			GO:0007126 - meiosis		
2075	RIV1	riv1*	RICE VIVIPARY 1	rice vivipary-1		riv1-1, riv1-2		Germination of the seed on the standing panicles before harvest.	 Seed - Physiological traits - Dormancy						GO:0009845 - seed germination		
2076	RIV2	riv2*	RICE VIVIPARY 2	rice vivipary-2				Germination of the seed on the standing panicles before harvest.	 Seed - Physiological traits - Dormancy						GO:0009845 - seed germination		
2077	RMU1	Rmu1*, RMu1	MUTATOR 1	Mutator-like transposon					 Biochemical character			GR:0060779			GO:0032196 - transposition, GO:0004803 - transposase activity, GO:0006280 - mutagenesis, GO:0006313 - transposition, DNA-mediated		
2078	RMU1-IR36*	RMu1-IR36*, RMu1-IR36	MUTATOR 1	Rice Mutator 1-IR36				transposon RMu1, transposon:RMu1. AB006808.	 Biochemical character			GR:0060772			GO:0032196 - transposition, GO:0006280 - mutagenesis		
2079	RMU1-A23*	RMu1-A23*, RMu1-A23	MUTATOR 1	Rice Mutator 1-A23				rice mutator element RMu1-A23, transposon:RMu1-A23. AB023047.	 Biochemical character			GR:0060773			GO:0032196 - transposition, GO:0006280 - mutagenesis		
2080	RMU2-IR36*	RMu2-IR36*, RMu2-IR36	MUTATOR 2	Rice Mutator 2-IR36				tranposable elemet RMu2-IR36, transposon:RMu2-IR36. AB017542.	 Biochemical character			GR:0060774			GO:0006280 - mutagenesis, GO:0032196 - transposition		
2081	RMU2-A1*	RMu2-A1*, RMu2-A1	MUTATOR 2	Rice Mutator 2-A1				transposable element RMu2-A1, transposon:RMu2-A1. AB017543.	 Biochemical character			GR:0060775			GO:0006280 - mutagenesis, GO:0032196 - transposition		
2082	RPR1	RPR1*, Rpr1-1, Rpr1	RICE PROBENAZOL RESPONSIBLE 1	rice probenazol responsible 1	RPR1 PROTEIN		11	PROBENAZOL RESPONSIBLE GENE, Rice probenazol responsible gene, Rice pathogenesis-related protein. E17367(Patent: JP 1998262682-A 1 06-OCT-1998;). AB019186	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0229500	LOC_Os11g12340.2, LOC_Os11g12340.1	GR:0060780			GO:0009410 - response to xenobiotic stimulus, GO:0043531 - ADP binding, GO:0009405 - pathogenesis, GO:0006952 - defense response		
2084	S18	S18*, Hst39	F1 POLLEN STERILITY 18	F1 pollen sterility 18, Hybrid sterility-39			10	F1 pollen sterility. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060825			GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2085	S19		F2 POLLEN SEMI-STERILITY 19	F2 pollen semi-sterility found in the progeny of Oryza sativa and O. glaberrima			3	This gene causes pollen semi-sterility in the cross between O. sativa and O. glaberrima. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility	PO:0009046 - flower 
2086	S20	S20*, Hst43	F2 POLLEN SEMI-STERILITY 20	F1 pollen semi-sterility-20, Hybrid sterility-43			7	Pollen semi-sterility gene found in the cross between O. sativa and O. glaberrima. F2 pollen semi-sterility found in the progeny of Oryza sativa and O. glaberrima. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060829			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0009046 - flower 
2087	S21	S21*, Hst44	F2 POLLEN SEMI-STERILITY 21	F1 pollen semi-sterility-21, Hybrid sterility-44			7	Pollen semi-sterility found in the cross between O. sativa and O. glaberrima. F2 pollen semi-sterility found in the progeny of Oryza sativa and O. glaberrima. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060830			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0009046 - flower 
2088	SALT2	SalT2*(P), P, SalT2*, Sal2	SALT TOLERANCE 2	Salt tolerance-2			7	incomplete dominance. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060836			GO:0009651 - response to salt stress	TO:0000429 - salt sensitivity, TO:0000276 - drought tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2089	SD9	sd9(t), sd9, sd(t)*	SEMIDWARF 9	Ginbozu, Gimbozu, semidwarf-9		sd9(t), sd9-n(t)		Reducing culm length by 20% without any negative effects on other proctically important characters.[533] PO:0009047; stem.	 Vegetative organ - Culm			GR:0060850			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
2090	SD10	sd10(t)*, sd10(t), sd10	SEMIDWARF 10	semidwarf-10(Kinmaze), semidwarf-10				PO:0009047; stem.	 Vegetative organ - Culm			GR:0060851			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
2091	SDR1	Sdr1*, Sdr1	SEED DORMANCY 1	Seed dormancy-1			3	PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Dormancy			GR:0060858			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
2092	SDR2	Sdr2*, Sdr2	SEED DORMANCY 2	Seed dormancy-2			5	PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Dormancy			GR:0060859			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
2093	SE9	Se9	PHOTOSENSITIVITY 9	Photoperiod-sensitivity-9, Photoperiod-sensitivity 9, Photosensitivity-9				Dominant gene for photoperiod sensitivity. Its recessive allele se9 inhibits the expression of photoperiod sensitivity genes at other loci. The segregation of this locus can be observed only under extremely long daylength, presumably more than 17 hours. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060868			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
2095	SH	Sh(t)*, Sh6	SHATTERING	Shattering, Seed shattering, Shattering-6			4	This gene obtained from O. glumaepatula and located on the chromosome 4. May be an allele of Sh3(t). PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0061141				TO:0000473 - grain shattering	PO:0009010 - seed 
2096	SL	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL	SEKIGUCHI LESION	Sekiguchi lesion, Cytochrome P450 71P1, tryptamine 5-hydroxylase, large lesion mimic 1	TRYPTAMINE 5-HYDROXYLASE	cyp71a1, llm1, sl	12	LOC_Os12g16720. Sekiguchi lesion (sl) mutation induces large orange to orang-brown lesions (Sekiguchi lesion) that eventurally occupy the entire surface area of leaves. First found in cv. Asahi by Sekiguchi & Furuta, and demonstrated by Kiyosawa that is controlled by a single recessive gene, sl. This is a hypersensitive reaction of plant cells to pathogen resulting the resistance to blast infection. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009025; leaf. CYP71A1 in Lu et al. 2018.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os12g0268000	LOC_Os12g16720.1	GR:0060895			GO:0002213 - defense response to insect, GO:0042427 - serotonin biosynthetic process, GO:0006913 - nucleocytoplasmic transport, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding	TO:0000482 - chemical stress sensitivity, TO:0000063 - mimic response, TO:0000075 - light sensitivity, TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance, TO:0000468 - leaf blast disease resistance, TO:0000454 - stem borer resistance	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009025 - vascular leaf 
2097	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18	SLENDER RICE1	slender rice1-1, slender rice, Giberellin-insensitive gene homolog, DELLA protein SLR1, Protein SLENDER RICE1, Gibberellic acid-insensitive mutant protein, Slender Rice 1, SLENDER 1, SLENDER1, GRAS protein 18	DELLA PROTEIN SLR1	slr1-1, Slr1-d1, Slr1-d3, slr1, slr1-6	3	A constitutive GA-responsive mutant which shows a slender phenotype with elongated stem, leaf sheath, and blade similar to that of rice plants treated exogenously with GA3.This gene is the loss-of-function mutant in the SLR1 gene, which is an ortholog of GAI and RGA in Arabidopsis, RHT in wheat, and D8 in maize. DELLA PROTEIN. Q7G7J6.  AB262980. AB030956. PO:0009006; shoot ; PO:0020142; stem internode ; PO:0009005; root ; PO:0000003; whole plant ; PO:0009025; leaf. GRO:0007047; 02-seedling. AY781175. OsRGA1 in Zhou et al. 2014. LOC_Os03g49990. KC611066-KC611074 (O. sativa and wild rice species, partial cds). GO:2001006: regulation of cellulose biosynthetic process. GO:0072488: ammonium transmembrane transport. 	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0707600	LOC_Os03g49990.1	GR:0061384			GO:0051171 - regulation of nitrogen compound metabolic process, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009651 - response to salt stress, GO:0009740 - gibberellic acid mediated signaling, GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0010468 - regulation of gene expression, GO:0045449 - regulation of transcription, GO:0045926 - negative regulation of growth, GO:0009413 - response to flooding	TO:0006001 - salt tolerance, TO:0000576 - stem length, TO:0000401 - plant growth hormone sensitivity, TO:0000227 - root length, TO:0000145 - internode length, TO:0000492 - leaf shape, TO:0000207 - plant height, TO:0000084 - root number, TO:0000112 - disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000017 - anatomy and morphology related trait, TO:0000286 - submergence sensitivity	PO:0000003 - whole plant , PO:0009005 - root , PO:0009006 - shoot system , PO:0009025 - vascular leaf , PO:0020142 - stem internode 
2098	SPR4	Spr4(t)*, Spr4(t)	SPREADING PANICLE 4	Spreading panicle4, Spreading panicle 4, Spreading panicle-4				PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060917			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
2099	STRN1	S-trn1(t)*, Strn-l(t)*, Strn, S-trn-l	S-TYPE SELF-INCOMPATIBILITY, THIOREDOXIN HOMOLOGY	S-type self-incompatibility, thioredoxin homology, S-type thioredoxin homology, S-thioredoxin-like gene, self-incompatibility(S) thioredoxin like gene, S-type thioredoxin-like gene, S-type thioredoxin	S-TYPE THIOREDOXIN		1	AB024702. similar to Phalaris coelurescens S-type thioredoxin.	 Biochemical character			GR:0060937			GO:0000008 - thioredoxin, GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity		
2100	SV	SV(t)*	SEED VIABILITY	Seed viability				PO:0009010; seed.	 Vegetative organ - Culm			GR:0060949			GO:0009845 - seed germination	TO:0000345 - seed viability	PO:0009010 - seed 
2101	TA1	Ta1*, Ta1	TILLER AND LEAF ANGLES 1	Tiller and leaf angles-1, Tiller and leaf angles			9	This gene increases tiller, leaf and flag leaf angles. Located between two markers, RZ228 and RG667 on the chromosome 9.	 Vegetative organ - Culm			GR:0060950			GO:0007275 - multicellular organismal development	TO:0000206 - leaf angle	
2102	TS3(T)*	ts3(t)*, ts3	TWISTED STEM-3	twisted stem-3			1	PO:0009047; stem. GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Culm			GR:0060969			GO:0007275 - multicellular organismal development	TO:0000427 - culm angle	PO:0009047 - stem 
2103	TW	tw(t)*(tl), tl, tw	TWISTED LEAF	twisted leaf				In the 3-4 upper leaves including boot leaf, the failure in development of mid-rib causes unbalanced development of leaf blades in the two sides of mid-rib and results in the twisted and drooping leaf.   ,	 Vegetative organ - Leaf			GR:0060975			GO:0007275 - multicellular organismal development	TO:0000085 - leaf rolling	
2104	VP1	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1	VIVIPAROUS 1	Viviparous-1, Protein viviparous homolog, B3 domain-containing protein VP1, Transcription activator VP1-rice, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 4	B3 DOMAIN-CONTAINING PROTEIN VP1	Osvp1, Osvp1-1, Osvp1-2	1	Vp1 encodes a seed-specific regulatory transcription factor. a global regulator of seed maturation. D16640. P37398. PO:0009010; seed. GRO:0007045; 09-mature grain stage. LOC_Os01g68370. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os01g0911700	LOC_Os01g68370.4, LOC_Os01g68370.3, LOC_Os01g68370.2, LOC_Os01g68370.1	GR:0060995			GO:0017163 - basal transcription repressor activity, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0009790 - embryonic development, GO:0009738 - abscisic acid mediated signaling, GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0009414 - response to water deprivation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0000619 - vivipary, TO:0000253 - seed dormancy, TO:0000276 - drought tolerance	PO:0009010 - seed 
2105	W1	W1*, Hwg1	DOMINANT F1 WEAKNESS	Dominant F1 weakness, Hybrid weakness-g1				complementary. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness			GR:0060996			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
2106	W2	W2*, Hwg2	DOMINANT F1 WEAKNESS	Dominant F1 weakness, hybrid weakness-g2				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness			GR:0060997			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000355 - heterosis, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2107	WP2	wp2*, wp2	WHITE PANICLE 2	white panicle-2				PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0061003			GO:0015995 - chlorophyll biosynthetic process	TO:0000077 - shoot anatomy and morphology trait, TO:0000264 - lemma and palea color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
2108	XA15	xa15(t)*(xanm), xanm, xa15	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 15	Xanthomonas oryzae pv. oryzae resistance 15, Xanthomonas campestris pv. oryzae resistance-15, Xanthomonas oryzae pv. oryzae resistance-15					 Tolerance and resistance - Disease resistance			GR:0061023			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
2109	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 23	Xanthomonas oryzae pv. oryzae resistance 23, Xanthomonas campestris pv. oryzae resistance-23, Xanthomonas oryzae pv. oryzae resistance-23		xa23	11	Resistant to Philippine races P1 to P10, Chinese pathotypes C1 to C7 and Japanese races T1 to T3 at tillering stage. KP123634, KP123635. LOC_Os11g37620. an executor R gene family. The Xa23 locus, originally from a wild rice (O. rufipogon), confers completely dominant and broad-spectrum resistance against bacterial blight of rice (Zhang et al., 2001). a Xa10-like TAL effector-dependent executor R gene. TO:0006047: calcium concentration.	 Tolerance and resistance - Disease resistance	Os11g0586701	LOC_Os11g37620.1	GR:0061031			GO:0010942 - positive regulation of cell death, GO:0005783 - endoplasmic reticulum, GO:0042742 - defense response to bacterium, GO:0051924 - regulation of calcium ion transport, GO:0009626 - plant-type hypersensitive response	TO:0000175 - bacterial blight disease resistance	
2110	XA24	xa24(t)*, xa24	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 24	Xanthomonas oryzae pv. oryzae resistance 24, Xanthomonas campestris pv. oryzae resistance-24, Xanthomonas oryzae pv. oryzae resistance-24				Resistant to race 6.	 Tolerance and resistance - Disease resistance			GR:0061033			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
2111	XGRPEPC	XgrPepc*, XgrPepc	PHOSPHOENOLPYRUVATE CARBOXYLASE	Phosphoenolpyruvate carboxylase, Phosphoeno/pyruvate carboxylase, PEPCase, C4 PEPCase, Phosphoenol pyruvate carboxylase (C4 type)	PHOSPHOENOLPYRUVATE CARBOXYLASE		1		 Biochemical character			GR:0061039			GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity		
2113	TMS2	tms2	THERMOSENSITIVE MALE STERILITY 2	thermosensitive male sterility2			7	Male sterility responding to temperature above 28C at pollen mother cell formation stage. This mutation was induced by gamma ray irradiation from the variety Reimei.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000067 - genic male sterility-thermo sensitive	
2114	RIV1	riv1	RICE VIVIPARY 1	rice vivipary 1, rice vivipary-1		riv1-1, riv1-2		PO:0009010; seed.	 Seed - Morphological traits - Embryo			GR:0060759			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
2115	RIV2	riv2	RICE VIVIPARY 2	rice vivipary 2, rice vivipary-2				PO:0009010; seed.	 Seed - Morphological traits - Embryo			GR:0060760			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
2116	SHO2	sho2	SHOOT ORGANIZATION 2	shoot organization 2, shoot organization-2, shoot organization2		sho2-1		PO:0009009; embryo ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. an Ortholog of Arabidopsis AGO7.	 Seed - Morphological traits - Embryo			GR:0060884			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development, GO:0007275 - multicellular organismal development	TO:0000064 - embryo related trait, TO:0000492 - leaf shape	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2117	SHO3	sho3	SHOOT ORGANIZATION 3	shoot organization 3, shoot organization-3		sho3-1		PO:0009009; embryo ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0061065			GO:0009888 - tissue development, GO:0007275 - multicellular organismal development, GO:0009887 - organ morphogenesis	TO:0000492 - leaf shape, TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2118	PB1	Pb1, Pbst, RMG58.	PANICLE BLAST RESISTANCE 1	Panicle blast resistance-1, Panicle blast resistance, Panicle blast 1			11	Resistance to panicle blast in testing fields under disease-conducive environments. PO:0009049; inflorescence. Original line is Modan(Indica). Map position (85.7-91.4 cM). AB570370, AB570371. a coiled-coil-nucleotide-binding site-leucine-rich repeat (CC-NB-LRR) protein.	 Tolerance and resistance - Disease resistance			GR:0060596			GO:0050832 - defense response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009049 - inflorescence 
2119	MORI1	mori1	MORI 1	mori1		mori1-1, mori1-2, mori1-3, mori1-4, mori1-5	3	mori1 plants are characterized by the rapid production of small leaves and short branches. All the characteristics of mori1 plants, such as plastochron, leaf structure, stem structure, size and cell division activity of shoot meristem and photosynthetic activity remain at the 2nd-leaf stage of the wild type and the plants do not enter into a reproductive phase. juvenile-adult phase change. PO:0009047; stem ; PO:0006318; floret (sensu Poaceae) ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Heterochrony			GR:0060530			GO:0007275 - multicellular organismal development	TO:0000492 - leaf shape, TO:0000207 - plant height, TO:0000137 - days to heading	PO:0009082 - spikelet floret , PO:0009025 - vascular leaf , PO:0009047 - stem 
2120	SE11	se11, se11(t)*	PHOTOSENSITIVITY 11	photosensitivity11, photosensitivity 11, photoperiod-sensitivity-11				Recessive gene for photosensitivity. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060870			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
2121	SE12	Se12	PHOTOSENSITIVITY 12	Photosensitivity12, Photosensitivity 12, Photoperiod-sensitivity-12				Dominant gene for photosensitivity. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060871			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
2122	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB	STAMENLESS 1	stamenless1, stamenless 1, stamenless-1, open break, pistilloid-stamen	C2H2 ZINC FINGER PROTEIN	opb-1, opb-2	1	Lemma and palea are degenerated, so that they fail to enclose the stamens and pistil. Male sterile due to abnormal stamens. Stamens are transformed into pistils, so that one or two naked seeds can be formed in a single floret when fertilized by normal po... PO:0009038; palea ; PO:0006455; carpel (sensu Poaceae) ; PO:0020091; male gametophyte ; PO:0009037; lemma ; PO:0006441; stamen (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage. AB297789, EU443151,  A floral organ mutant of rice, ps, has flowers with degenerated lemma and palea.	 Reproductive organ - Pollination, fertilization, fertility - Other sterilities,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0129200	LOC_Os01g03840.1	GR:0060936			GO:0048444 - floral organ morphogenesis, GO:0007275 - multicellular organismal development, GO:0048437 - floral organ development	TO:0000499 - flower anatomy and morphology trait, TO:0000437 - male sterility, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009029 - stamen , PO:0009030 - carpel , PO:0009037 - lemma , PO:0009038 - palea , PO:0020091 - obsolete microgametophyte 
2123	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393	ABERRANT PANICLE ORGANIZATION 1	aberrant panicle organization 1, aberrant panicle organization-1, STRONG CULM 2, STRONG CULM2, F-box protein 321	FOX-BOX PROTEIN	apo1-1, apo1-2, apo1-3, SCM2-Habataki, SCM2-ST6	6	This gene temporally regulates the conversion of meristem identity in the reproductive phase. AB292777. PO:0009049; inflorescence ; PO:0006318; floret (sensu Poaceae). GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage. Transcriptional cofactor. Enhance inflorescence branching phenotype.  LOC_Os06g45460. TO:0020083: stem diameter.	 Vegetative organ - Culm,  Reproductive organ - Inflorescence,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os06g0665400	LOC_Os06g45460.1	GR:0060058			GO:0030154 - cell differentiation	TO:0000456 - spikelet number, TO:0000089 - panicle type, TO:0000499 - flower anatomy and morphology trait, TO:0000068 - lodging incidence, TO:0002639 - shoot branching, TO:0000339 - stem thickness, TO:0002759 - grain number, TO:0000051 - stem strength, TO:0000371 - yield trait, TO:0000052 - primary branching of inflorescence, TO:0000050 - inflorescence branching	PO:0009082 - spikelet floret , PO:0009049 - inflorescence 
2124	SE10	se10, se10(t)*	PHOTOSENSITIVITY 10	photosensitivity10, photosensitivity 10, photoperiod-sensitivity-10				Ressessive gen for photosensitivity. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060869			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
2125	SPW1	SPW1, spw1, MADS16, OsMADS16	SUPERWOMAN 1	SUPERWOMAN1/OsMADS16, SUPERWOMAN1, superwoman-1, MADS-box transcription factor 16, Protein SUPERWOMAN1, Protein APETALA3-like	MADS BOX PROTEIN 16	spw1-1, spw1-2	6	SPW1 gene regulates the identiies of stamens and lodicules. Loss-of-function mutation of SPW1 results in the homeotic conversion of stamens and lodicules to pistils and glumes, respectively. Os06g0712700. LOC_Os06g49840. Q944S9. a rice AP3 orthologue. AF077760.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0712700	LOC_Os06g49840.2, LOC_Os06g49840.1	GR:0061142			GO:0003700 - transcription factor activity, GO:0005739 - mitochondrion, GO:0009908 - flower development, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0006350 - transcription	TO:0000622 - flower development trait	PO:0007615 - flower development stage 
2126	DL	DL, dl(lop), lop, dl, dl1	DROOPING LEAF	drooping leaf, drooping leaf-1, DL protein, Protein DROOPING LEAF, Protein CRABS CLAW homolog, Protein CRC homolog	DL PROTEIN	dl-1, dl-2, dl-5, dl-superman1, dl-superman2, dl-sup1, dl-sup2, dl-sup5, dl-sup6	3	In leaves, DL gene regulates the development of midrib.  In flowers, DL function as a homeotic gene regulating the identity of carpel.  Loss-of-function mutation of DL results in drooping leaves and homeotic conversion of carpel to stamens. Os03g0215200. LOC_Os03g11600. Q76EJ0. PO:0000019; gynoecium primordium ; PO:0006318; floret (sensu Poaceae) ; PO:0009009; embryo ; PO:0000229; floral meristem ; PO:0009025; leaf ; PO:0006455; carpel (sensu Poaceae) ; PO:0006441; stamen (sensu Poaceae). GRO:0007163; leaf stage P2 ; GRO:0007151; 6.1-flowering stage ; GRO:0007044; 06-heading stage ; GRO:0007208; spikelet stage SP7 ; GRO:0007162; leaf stage P4 ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007164; leaf stage P1. orthlog of Arabidopsis CRC (CRAB CLAW). KC609207-KC609216 (O. sativa and wild rice species, partial ads). TO:20109: vascular bundle development trait.	 Vegetative organ - Leaf,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0215200	LOC_Os03g11600.2, LOC_Os03g11600.1	GR:0060233		50.0	GO:0030154 - cell differentiation, GO:0003677 - DNA binding, GO:0048440 - carpel development, GO:0048366 - leaf development, GO:0008270 - zinc ion binding, GO:0010022 - meristem determinacy, GO:0010073 - meristem maintenance, GO:0005634 - nucleus	TO:0000499 - flower anatomy and morphology trait, TO:0000472 - vascular bundle number, TO:0002718 - awn anatomy and morphology trait, TO:0000655 - leaf development trait, TO:0006017 - meristem identity, TO:0000206 - leaf angle, TO:0000124 - flag leaf angle	PO:0000019 - gynoecium primordium , PO:0000229 - flower meristem , PO:0009082 - spikelet floret , PO:0009029 - stamen , PO:0009030 - carpel , PO:0009037 - lemma , PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2127	GRH4	Grh4	GREEN RICE LEAFHOPPER RESISTANCE 4	Green rice leafhopper resistance 4			3	Resistant to green rice leafhopper and complementary with Grh2 located on chromosome 11. The two complementary genes convey higher level of resistance.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect		
2129	BPH11	bph11	BROWN PLANT HOPPER RESISTANCE 11	brown planthopper resistance 11			3	Resistant to brown plant hopper. The gene was introgressed and mapped near RFLP marker G1318 on chromosome 3. PO:0009005; root.	 Tolerance and resistance - Insect resistance			GR:0060100			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
2130	BPH12	bph12	BROWN PLANT HOPPER RESISTANT 12	brown planthopper resistance 12			4	A gene for resistant to brown plant hopper introgressed from O. officinalis was mapped between RFLP markers G271 and R93 on chromosome 4. PO:0009005; root.	 Tolerance and resistance - Insect resistance			GR:0061163			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
2131	EUI2	eui2	ELONGATED UPPERMOST INTERNODE 2	elongated uppermost internode 2, elongated uppermost internode-2			10	Recessive gene for elongation of the uppermost internode, non-allelic to eui1. PO:0009047; stem ; PO:0020142; stem internode. GRO:0007048; 04-stem elongation stage.	 Vegetative organ - Culm			GR:0060321			GO:0009826 - unidimensional cell growth	TO:0000145 - internode length	PO:0009047 - stem , PO:0020142 - stem internode 
2132	FIB	fib, OsTAR2, TAR2	FISH BONE	fish bone, Trp aminotransferase 2	TRYPTOPHAN AMINOTRANSFERASE 2 	fib, fib-1, fib-2	1	This gene shows pleiotropic abnormalities in root, shoot and flower development.  a tryptophan aminotransferase. LOC_Os01g07500. orthologous to TAA1/TAR1/TAR2 of Arabidopsis and VT2/VT2-like of maize.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root	Os01g0169800 	LOC_Os01g07500.1	GR:0061164			GO:0016021 - integral to membrane, GO:0010087 - phloem or xylem histogenesis, GO:0009926 - auxin polar transport, GO:0009630 - gravitropism, GO:0016846 - carbon-sulfur lyase activity, GO:0009684 - indoleacetic acid biosynthetic process, GO:0009851 - auxin biosynthetic process, GO:0048364 - root development, GO:0080022 - primary root development, GO:0009734 - auxin mediated signaling pathway, GO:0048825 - cotyledon development, GO:0048467 - gynoecium development, GO:0030170 - pyridoxal phosphate binding, GO:0010588 - cotyledon vascular tissue pattern formation, GO:0010078 - maintenance of root meristem identity, GO:0048449 - floral organ formation, GO:0009958 - positive gravitropism, GO:0009723 - response to ethylene stimulus	TO:0000206 - leaf angle, TO:0006032 - panicle size, TO:0000492 - leaf shape, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000436 - spikelet sterility, TO:0000346 - tiller number, TO:0000656 - root development trait, TO:0000576 - stem length, TO:0000207 - plant height, TO:0000163 - auxin sensitivity, TO:0002672 - auxin content, TO:0002637 - leaf size, TO:0000257 - root branching	PO:0005001 - basal axillary shoot system , PO:0009005 - root , PO:0009006 - shoot system , PO:0009025 - vascular leaf , PO:0009037 - lemma , PO:0009038 - palea , PO:0009047 - stem , PO:0009051 - spikelet , PO:0025424 - vascular tissue development stage , PO:0007520 - root development stage 
2133	PLA2	pla2, pla2(pla2-1, pla2-2), plt2, LHD2	PLASTOCHRON 2	plastochron2, PLASTOCHRON2, LEAFY HEAD2, Protein terminal ear1 homolog, Protein PLASTOCHRON2, Protein LEAFY HEAD2	PROTEIN PLASTOCHRON2	pla2-1, pla2-2, pla2	1	Plastochrones are shortened and primary rachis branches are converted into vegetative shoots, i.e. rapid leaf emergence and abnormal panicle.Two recessive alleles, pla2-1 and pla2-2, were identified from M2 population mutagenized with N-methyl-N-nitrosourea.PLA2 encodes MEI2-like RNA-binding protein.Recessive alleles, pla2-1 and pla2-2, exhibit short plastochron and conversion of primary rachis branch primordia to vegetative shoot.  AB244276, DQ393277. A2WY46(indica). Q0JGS5(japonica). PO:0009047; stem ; PO:0020122; inflorescence axis ; PO:0000037; shoot apex ; PO:0009034; floral bract ; PO:0020148; shoot apical meristem ; PO:0020031; radicle ; PO:0020142; stem internode ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007140; B-reproductive stage ; GRO:0007189; panicle stage PA1 ; GRO:0007139; A-vegetative stage ; GRO:0007138; leaf development.	 Vegetative organ - Leaf,  Heterochrony	Os01g0907900	LOC_Os01g68000.1	GR:0061182			GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0003676 - nucleic acid binding, GO:0048366 - leaf development, GO:0009740 - gibberellic acid mediated signaling, GO:0051781 - positive regulation of cell division, GO:0007275 - multicellular organismal development, GO:0010229 - inflorescence development, GO:0009739 - response to gibberellin stimulus	TO:0000346 - tiller number, TO:0000135 - leaf length, TO:0002638 - shoot meristem development, TO:0000369 - vegetative growth time, TO:0000166 - gibberellic acid sensitivity, TO:0000655 - leaf development trait, TO:0000730 - mitotic cell cycle trait, TO:0000492 - leaf shape, TO:0000735 - plastochron, TO:0000370 - leaf width, TO:0000361 - stem anatomy and morphology trait	PO:0020148 - shoot apical meristem , PO:0020142 - stem internode , PO:0000037 - shoot apex , PO:0009025 - vascular leaf , PO:0009034 - flower bract , PO:0009047 - stem , PO:0020031 - radicle , PO:0020122 - inflorescence axis 
2134	GEM	gem	GYPSY EMBRYO	gypsy embryo				Embryo position on a seed is shifted to more apical region of a seed. PO:0009009; embryo.	 Seed - Morphological traits - Embryo			GR:0061168			GO:0048316 - seed development, GO:0080060 - integument development, GO:0048481 - ovule development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
2135	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1	LONG KERNEL 3	long kernel 3, long kernel-3, grain size, grain length and weight protein, GRAIN SIZE 3, G gamma subunit GS3, Heterotrimeric G Protein gamma3 Subunit		GS3-1, GS3-2, GS3-3, GS3-4, gs3, GS3-A, GS3-B, GS3-C	3	lk3(t) might be the same locus as Lkf. PO:0009010; seed.  putative transmembrane protein; functions as a negative regulator for grain size. DQ355996. AB488664. OsGW3 in Xia et al. 2015.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os03g0407400		GR:0061175			GO:0005886 - plasma membrane, GO:0007275 - multicellular organismal development, GO:0004871 - signal transducer activity, GO:0005834 - heterotrimeric G-protein complex, GO:0007186 - G-protein coupled receptor protein signaling pathway	TO:0000146 - seed length, TO:0000397 - grain size, TO:0000402 - grain width, TO:0000590 - grain weight, TO:0000391 - seed size, TO:0002730 - grain shape, TO:0000162 - seed quality, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0002731 - grain length to width ratio, TO:0000382 - 1000-seed weight	PO:0009010 - seed 
2136	AN7	An7(t), An7(t)*	AWN 7	Awn 7(t), Awn-7		An7-glum	5	Dominant gene for awnness, obtained from Australian wild rice Oryza meridionalis. This gene is located on chromosome 5 flanked by RFLP markers Y1060 (1.0cM) and C249 (5.8cM). PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061160			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2137	AN8	An8(t), An8(t)*, An8	AWN 8	Awn8(t), Awn-8		An8-glum	4	Dominant gene for awnness, obtained from Australian wild rice Oryza meridionalis. This gene is located on chromosome 4 flanked by RFLP markers XNpb237 (1.0cM) and C891 (5.3cM). PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061161			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2138	ARE1	are1	ABERRANT REGIONALIZATION OF EMBRYO	aberrant regionalization of embryo, aberrant regionalization of embryo-1			9	are1 embryo develops two shoots during embryogenesis. PO:0009009; embryo.	 Seed - Morphological traits - Embryo			GR:0061162				TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
2139	RHZ2	Rhz2	RHIZOME GENE 2	Rice rhizome gene 2, Rhizomatous from O. longistaminata-2			3	Dominant complementary gene with Rhz3, which develops a rhyzome. Originally the gene existed in O. longistaminata. This gene was located on chromosome 3 flanked by SSR markers, OSR16(1.3cM) and OSR13(8.1cM). PO:0009005; root.	 Vegetative organ - Root			GR:0061183			GO:0007275 - multicellular organismal development	TO:0000257 - root branching	PO:0009005 - root 
2140	RHZ3	Rhz3	RHIZOME GENE 3	Rice rhizome gene 3, Rhizomatous from O. longistaminata-3			4	Dominant complementary gene with Rhz2, which develops a rhizome. Originally the gene exists in Oryza longistaminata. This gene was located on chromosome 4 flanked by SSR markers, RM119 (2.2cM) and RM273 (7.4cM). PO:0009005; root.	 Vegetative organ - Root			GR:0061184			GO:0007275 - multicellular organismal development	TO:0000257 - root branching	PO:0009005 - root 
2141	S26	S26(t), S26(t)*	HYBRID STERILITY 26	Hybrid sterility 26, F1 sterility-26			6	F1 sterility gene in japonica/indica cross. There is a possibility that S26(t) is allelic to S5. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0061172			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2142	S25	S25(t), S25(t)*	HYBRID STERILITY 25	Hybrid sterility 25, F1 pollen semi-sterility-25			12	This gene causes F1 pollen sterility in japonica/indica cross. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0061171			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2143	SPL12	spl12(t), spl12(t)*	SPOTTED LEAF 12	spotted leaf 12, spotted leaf-12			2	This gene shows spotted, drooping and somewhat yellowish green leaves at seedling stage. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Lesion mimic			GR:0061176			GO:0015996 - chlorophyll catabolic process, GO:0006952 - defense response	TO:0000063 - mimic response	PO:0000003 - whole plant , PO:0009011 - plant structure 
2145	qLHD3(t)	qlhd3(t)	late heading (QTL)-3(t)	late heading (QTL)-3(t)			2	Recessive late heading gene from O. glumaepatula, significantly delays the days to heading by 12 days under natural daylength conditions. This QTL is located between two RFLP markers, C560 and R759 on the chromosome 2.	 Reproductive organ - Heading date	GR:0061166					GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism		
2146	S27	S27(t), S27(t)*	HYBRID STERILITY 27	Hybrid sterility 27, Pollen semi-sterility-27, F1 pollen sterility 27			8	This gene from O. glumaepatula causes pollen semi-sterility in heterozygotes. Spikelet fertility is normal. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0061173			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2147	HWF1	hwf1(t), hwf1(t)*, hwf1	HYBRID WEAKNESS F1	hybrid weakness f1, hybrid weakness-f1			4	A complementary gene causes hybrid weakness. Another complementing gene is not yet identified. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0061174			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000046 - f2-generation sterility	PO:0009046 - flower 
2148	XA25	Xa25(t), Xa25*, Xa25, Xa-25(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 25	Xanthomonas oryzae pv. oryzae resistance 25, Xanthomonas oryzae pv. oryzae resistance-25, Xanthomonas campestris pv. oryzae resistance-25				Resistant to bacterial blight disease. a bacterial blight resistance gene in HX-3. Xa-25(t) gene was located between the markers with 5.3 cM and 23.7 cM to S1269 and S1327, respectively (Gao et al. 2001).	 Tolerance and resistance - Disease resistance			GR:0061188			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
2149	PI24	Pi24, Pi24(t)	PYRICULARIA ORYZAE RESISTANCE 24	Pyricularia oryzae resistance 24, Magnaporthe grisea resistance-24, Blast resistance 24			12	Leaf blast resistance. PO:0009025; leaf. Resistant to blast isolate 92-183 (race ZC15) at the vegetative stage only. Original line is Zhong 156.	 Tolerance and resistance - Disease resistance			GR:0061185		10.3	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
2150	PI25	Pi25, Pi25(t)	PYRICULARIA ORYZAE RESISTANCE 25	Pyricularia oryzae resistance 25, Magnaporthe grisea resistance-25, Blast resistance 25			6	Leaf and neck blast resistance. PO:0009025; leaf. Original line is Gumei 2. Resistant to blast isolate 92-183 (race ZC15) at both the vegetative and reproductive stages. Original line is Gumei2 (Indica). Map position (63.2-64.6 cM).	 Tolerance and resistance - Disease resistance			GR:0061186		63.2	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
2151	OVL	ovl	OVULELESS	ovuleless				About 85% of matured pistils have no ovule and cause seed sterility (ca 87%) though the stamens are normal. Regarded as a female sterility. PO:0009062; gynoecium.	 Reproductive organ - Pollination, fertilization, fertility - Other sterilities			GR:0061318			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility	PO:0009062 - gynoecium 
2152	ADS	ads	ADAXIAL SNOWY LEAF	adaxial snowy leaf		ads		Adaxial surface of leaf blade is whitish, but the abaxial surface is normal green. PO:0009025; leaf.	 Coloration - Chlorophyll			GR:0061295			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
2153	NK2	nk2(t), nk2	NOTCHED KERNEL 2	notched kernel-2(t), notched kernel 2			5	These kernels are wrinkled, brownish and white-cored, and notched at the belly. Originally introduced from O. glumaepatula. The gene nk2 was mapped between RFLP markers G1103 and R521 on the long arm of chromosome 5, with map distances of 3.5 cM and 3.6 cM, respectively.	 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development		
2154	NK	Nk	NOTCHED KERNEL	Notched kernel			5	PO:0009010; seed.	 Seed - Morphological traits - Grain shape			GR:0061309			GO:0007275 - multicellular organismal development	TO:0000287 - brown rice shape	PO:0009010 - seed 
2155	ISH3	iSh3, iSh3(t)	INHIBITOR FOR SH3-GLA	inhibitor for Sh3-gla			4	Recessive inhibitor gene for seed shattering gene of O. glaberrima, Sh3-gla.	 Seed - Physiological traits - Shattering								
2156	SH5-GLUM	Sh5-glum	SHATTERING	Shattering 5-glu			5	Seed shattering gene found in Oryza glumaepatula. Dominant gene.	 Seed - Physiological traits - Shattering								
2157	SH6-MER	Sh6-mer	SHATTERING	Shattering 6-mer			5	Seed shattering gene found in Oryza meridionalis. Dominant gene.	 Seed - Physiological traits - Shattering								
2158	S28	S28(t)	POLLEN SEMI-STERILITY 28	Pollen semi-sterility 28(t)			4	Pollen semi-sterility gene found in the hybrid between O. sativa and O. glumaepatula.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
2159	S22	S22(t)	F1 POLLEN SEMI-STERILITY 22	F1 pollen semi-sterility 22(t)			2	Pollen semi-sterility found in the hybrid between O. glumaepatula and O. sativa.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
2160	S23	S23(t)	F1 POLLEN SEMI-STERILITY 23	F1 pollen semi-sterility 23(t)			7	Pollen semi-sterility found in the hybrid between O. sativa and O. glumaepatula.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
2161	S24	S24(t), S24(t)*, Sb, F5-Du	F1 POLLEN STERILITY 24	F1 pollen sterility 24(t), F1 pollen sterility-24, Hybride male sterility 24		S24-j, S24-i, S24-as, S24-ir	5	F1 pollen sterility found in the japonica and indica hybrid. S24 was located between R830 and R3166 with a distance of 1.4 and 2.8 cM, respectively. S35 gene might function as a modifier of S24. S24, f5-Du, Sb mapped to the same region.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060833			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2162	GM8	Gm8(t), Gm8	GALL MIDGE RESISTANCE 8	Gall midge resistance 8(t), Gall midge resistance 8, Gall midge resistance-8			8	Gall midge resistance gene, being located on chromosome 8 between AFLP markers AR257 and AS168. PO:0009011; plant structure ; PO:0000003; whole plant. The gene Gm8 was mapped to chromosome 8 within a 400-kbp region, and the SSR markers RM22685 and RM22709 flank the gene closely.	 Tolerance and resistance - Insect resistance			GR:0061088			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2163	qBPH-12	qBPH-12	QTL of brown planthopper resistance-12	brown planthopper resistance (QTL)-12			12	QTL for brown planthopper resistance.	 Tolerance and resistance - Insect resistance								
2164	qGRH-2	qGRH-2	Green rice leafhopper resistance (QTL)-2	Green rice leafhopper resistance (QTL)-2			2	QTL for green rice leafhopper resistance, located between two markers, C621 and C601 on the chromosome 2.	 Tolerance and resistance - Insect resistance								
2165	qGRH-4	qGRH-4	Green rice leafhopper resistance (QTL)-4	Green rice leafhopper resistance (QTL)-4			4	QTL for green rice leafhopper resistance, located between two markers, R288 and XNpb311 on the chromosome 4. It is also located near the resistance gene for green leafhopper.	 Tolerance and resistance - Insect resistance								
2166	qGRH-5	qGRH-5	Green rice leafhopper resistance (QTL)-5	Green rice leafhopper resistance (QTL)-5			5	QTL for green rice leafhopper resistance, located between two markers, C569 and C309 on the chromosome 5. This appears to coincide with gene Grh1.	 Tolerance and resistance - Insect resistance								
2167	qGRH-6	qGRH-6	Green rice leafhopper resistance (QTL)-6	Green rice leafhopper resistance (QTL)-6			6	QTL for green rice leafhopper resistance, located between two markers, XNpb386 and Ky11 on the chromosome 6.  This appears to coincide with gene Grh3.	 Tolerance and resistance - Insect resistance								
2168	qGRH-11	qGRH-11	Green rice leafhopper resistance (QTL)-11	Green rice leafhopper resistance (QTL)-11			11	QTL for green rice leafhopper resistance, located between two markers, C1172 and C1465 on the chromosome 11. This appears to coincide with gene Grh2.	 Tolerance and resistance - Insect resistance								
2169	qGRH-3	qGRH-3	Green rice leafhopper resistance (QTL)-3	Green rice leafhopper resistance (QTL)-3			3	QTL for green rice leafhopper resistance, located between two markers, XNpb144 and C1351 on the chromosome 3. This appears to coincide with gene Grh4.	 Tolerance and resistance - Insect resistance								
2170	HSA1A	hsa1(t), s(t), hst49	F2 STERILITY-1	F2 sterility-1(t)	DUF1618 DOMAIN PROTEIN	hsa1-IR	12	This gene causes F2 sterility complementarily with hsa2(t) in the cross between japonica and indica cross. hsa1 locus contains two interacting genes, HSA1a and HSA1b, within a 30-kb region (Kubo et al. 2016). LC066597(cDNA accession, IR24, indica).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os12g0589400	LOC_Os12g39880.1	GR:0061092			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
2171	qSH-1-1(t) (QSh1)	qSH-1-1(t) (QSh1)	Shattering (QTL)-1-1(t)	Shattering (QTL)-1-1(t)			1	Seed shattering QTL gene, located between two markers, C131 and RG472 on the chromosome 1.	 Seed - Physiological traits - Shattering								
2172	qSH-2-1(t) (QSh2)	qSH-2-1(t) (QSh2)	Shattering (QTL)-2-1(t)	Shattering (QTL)-2-1(t)			2	Seed shattering QTL gene, located between two markers, KG139 and C624x on the chromosome 2.	 Seed - Physiological traits - Shattering								
2173	qSH-3-1(t) (QSh3)	qSH-3-1(t) (QSh3)	Shattering (QTL)-3-1(t)	Shattering (QTL)-3-1(t)			3	Seed shattering QTL gene, located in the neighbor of the marker RG418 on the chromosome 3.	 Seed - Physiological traits - Shattering								
2174	qSH-4-1(t) (QSh4)	qSH-4-1(t) (QSh4)	Shattering (QTL)-4-1(t)	Shattering (QTL)-4-1(t)			4	Seed shattering QTL gene, located between two markers, RG449 and RZ69 on the chromosome 4.	 Seed - Physiological traits - Shattering								
2175	qSH-5-1(t) (QSh5)	qSH-5-1(t) (QSh5)	Shattering (QTL)-5-1(t)	Shattering (QTL)-5-1(t)			5	Seed shattering QTL gene, located between two markers, Y1049 and R569a on the chromosome 5.	 Seed - Physiological traits - Shattering								
2177	qSH-9-1(t) (QSh9)	qSH-9-1(t) (QSh9)	Shattering (QTL)-9-1(t)	Shattering (QTL)-9-1(t)			9	Seed shattering QTL gene, located between two markers, RG451 and RZ404 on the chromosome 9.	 Seed - Physiological traits - Shattering								
2178	qRF-1(t)	qRf-1(t)	Fertility restoration (QTL)-1(t)	Fertility restoration (QTL)-1(t)			1	Fertility restorer QTL, located between two markers, RG532 and RG472 on the chromosome 1.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
2179	qRF-7(t)	qRf-7(t)	Fertility restoration (QTL)-7(t)	Fertility restoration (QTL)-7(t)			7	Fertility restorer QTL, located between two markers, RZ395 and RZ989  on the chromosome 7.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
2180	qRF-10(t)	qRf-10(t)	Fertility restoration (QTL)-10(t)	Fertility restoration (QTL)-10(t)			10	Fertility restorer QTL, located between two markers, RZ811 and RG561 on the chromosome 10.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
2181	qRF-11(t)	qRf-11(t)	Fertility restoration (QTL)-11(t)	Fertility restoration (QTL)-11(t)			11	Fertility restorer QTL, located between two markers, RG118 and RG167 on the chromosome 11.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
2182	qOVA1-3	qOVA1-3, qOVA-1-3(t)	Whitebacked planthopper resistance (QTL)-1-3(t)　ovicidal response to the WBPH by watery lesion	Whitebacked planthopper resistance (QTL)-1-3(t)　ovicidal response to the WBPH by watery lesion			1	Whitebacked planthoppder resistant QTL on the chromosome 1 due to egg killing effect.	 Tolerance and resistance - Insect resistance								
2183	qOVA5-1	qOVA5-1, qOVA-5-1(t)	Whitebacked planthopper resistance (QTL)-5-1(t)ovicidal response to the WBPH by watery lesion	Whitebacked planthopper resistance (QTL)-5-1(t)ovicidal response to the WBPH by watery lesion			5	Whitebacked planthopper resistant QTL on the chromosome 5 due to egg killing effect.	 Tolerance and resistance - Insect resistance								
2184	qOVA-5-2(t)	qOVA-5-2(t)	Whitebacked planthopper resistance (QTL)-5-2(t)	Whitebacked planthopper resistance (QTL)-5-2(t)			5	Whitebacked planthopper resistant QTL on the chromosome 5 due to egg killing effect.	 Tolerance and resistance - Insect resistance								
2185	RPR1-1	Rpr1-1(t)	PR-1 PROTEIN 1	PR-1 protein-1(t)	PR-1 PROTEIN 1		1	PR-1 is one of the pathogenesis-related proteins in plants.	 Biochemical character						GO:0009405 - pathogenesis		
2186	RPR1-2	Rpr1-2(t), Rpr1-2	PR-1 PROTEIN 2	PR-1 protein-2(t)	PR-1 PROTEIN 2		5	PR-1 is one of the pathogenesis-related proteins in plants. Rice pathogenesis-related protein.	 Biochemical character			GR:0060781			GO:0009405 - pathogenesis		
2187	TSC1	tsc1(t), tsc-1, TSC-1	THERMO-SENSITIVE SEEDLING COLOR 1	thermo-sensitive seedling color-1(t), thermo-sensitive seedling-colour 1			11	Seedling color is white to light green under low temperature but becomes normal green with the progress of growth. PO:0000003; whole plant ; PO:0009025; leaf.	 Coloration - Chlorophyll			GR:0061078			GO:0009409 - response to cold, GO:0015975 - energy derivation by oxidation of reduced inorganic compounds, GO:0015994 - chlorophyll metabolic process, GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000326 - leaf color	PO:0000003 - whole plant , PO:0009025 - vascular leaf 
2188	RRL1	rrl1(t), rrl1	REDUCED ROOT LENGTH 1	reduced root length1(t), reduced root length 1, reduced root length-1				Seminal root length is significantly shorter than that of the wild type. Both shoot growth and rooting ability of the lateral roots are poorer and lower. PO:0009005; root. GRO:0007047; 02-seedling.	 Vegetative organ - Root			GR:0061068			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
2189	RRL2	rrl2(t), rrl2	REDUCED ROOT LENGTH 2	reduced root length2(t), reduced root length 2, reduced root length-2		rrl2-1, rrl2-2, rrl2-3		Seminal root length is significantly shorter than that of the wild type. Seminal roots are thinner and branching density of the lateral roots higher than those of the wild type. PO:0020144; apical meristem ; PO:0009005; root. GRO:0007047; 02-seedling.	 Vegetative organ - Root			GR:0061069			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000227 - root length	PO:0009005 - root , PO:0020144 - apical meristem 
2190	qBFR4-1(t)	qBFR4-1(t)	Blast field resistance(QTL)4-1(t)	Blast field resistance(QTL)4-1(t)			4	Blast field resistance QTL on the chromosome 4.	 Tolerance and resistance - Disease resistance								
2191	qBFR4-2(t)	qBFR4-2(t)	Blast field resistance(QTL)4-2(t)	Blast field resistance(QTL)4-2(t)			4	Blast field resistance QTL on the chromosome 4.	 Tolerance and resistance - Disease resistance								
2193	qLTG-2-1(t)	qLTG-2-1(t)	Low temperature germinability (QTL)-2(t)	Low temperature germinability (QTL)-2(t)			2	Low temperature germinability QTL on the chromosome 2, nearest marker being G1327.	 Tolerance and resistance - Stress tolerance								
2194	qLTG-4-1(t)	qLTG-4-1(t)	Low temperature germinability (QTL)-4-1(t)	Low temperature germinability (QTL)-4-1(t)			4	Low temperature germinability QTL on the chromosome 4.	 Tolerance and resistance - Stress tolerance								
2195	qLTG-4-2(t)	qLTG-4-2(t)	Low temperature germinability (QTL)-4-2(t)	Low temperature germinability (QTL)-4-2(t)			4	Low temperature germinability QTL on the chromosome 4.	 Tolerance and resistance - Stress tolerance								
2196	qLTG-5(t)	qLTG-5(t)	Low temperature germinability (QTL)-5(t)	Low temperature germinability (QTL)-5(t)			5	Low temperature germinability QTL on the chromosome 5.	 Tolerance and resistance - Stress tolerance								
2197	qLTG-11(t)	qLTG-11(t)	Low temperature germinability (QTL)-11(t)	Low temperature germinability (QTL)-11(t)			11	Low temperature germinability QTL on the chromosome 11 in the vicinity of marker G1465, or flanked by markers XNpb389and XNpb181.	 Tolerance and resistance - Stress tolerance								
2198	RSUS1	sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2	SUCROSE SYNTHASE 1	sucrose synthase1, Sucrose synthase 1, Sucrose synthase 2, Sucrose-UDP glucosyltransferase 1, Sucrose synthase-2, rice SuSy gene 2, sucrose-UDP glucosyltransferase isozyme 2	SUCROSE SYNTHASE 1		3	EC=2.4.1.13 P31924. X59046. D10418 (partial cds). D29733. HQ895719.	 Biochemical character	Os03g0401300	LOC_Os03g28330.5, LOC_Os03g28330.4, LOC_Os03g28330.3, LOC_Os03g28330.2, LOC_Os03g28330.1	GR:0061130			GO:0016157 - sucrose synthase activity, GO:0046686 - response to cadmium ion, GO:0009058 - biosynthetic process, GO:0010037 - response to carbon dioxide, GO:0009413 - response to flooding, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0005985 - sucrose metabolic process, GO:0005886 - plasma membrane, GO:0005773 - vacuole		
2199	RSUS2	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1	SUCROSE SYNTHASE 2	sucrose synthase2, Sucrose synthase 2, Sucrose synthase 1, Sucrose-UDP glucosyltransferase 2, Sucrose synthase-1, rice SuSy gene 1, sucrose-UDP glucosyltransferase isozyme 1, sucrose synthase l, rice sucrose synthase-1	SUCROSE SYNTHASE 2		6	LOC_Os06g09450. EC=2.4.1.13 P30298. X64770, Z15028. L39940. JQ733914 (promoter sequence). D39365, AU163158, AU174192. D29732.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0194900	LOC_Os06g09450.8, LOC_Os06g09450.7, LOC_Os06g09450.6, LOC_Os06g09450.5, LOC_Os06g09450.4, LOC_Os06g09450.3, LOC_Os06g09450.2, LOC_Os06g09450.1	GR:0061129			GO:0009555 - pollen development, GO:0005985 - sucrose metabolic process, GO:0016157 - sucrose synthase activity, GO:0005773 - vacuole, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0009058 - biosynthetic process, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion	TO:0000432 - temperature response trait	PO:0001007 - pollen development stage 
2200	RSUS3	RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111	SUCROSE SYNTHASE 3	Rice sucrose synthase-3(t), Sucrose synthase 3, Sucrose-UDP glucosyltransferase 3, Sucrose synthase-3, rice SuSy gene 3, endosperm-specific gene 111	SUCROSE SYNTHASE 3		7	EC=2.4.1.13 Q43009. L03366. LOC_Os07g42490. GO:2001006: regulation of cellulose biosynthetic process. GO:0140013: meiotic nuclear division.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os07g0616800	LOC_Os07g42490.2, LOC_Os07g42490.1	GR:0061131			GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0046686 - response to cadmium ion, GO:0030244 - cellulose biosynthetic process, GO:0051321 - meiotic cell cycle, GO:0010410 - hemicellulose metabolic process, GO:0009555 - pollen development, GO:0005985 - sucrose metabolic process, GO:0016157 - sucrose synthase activity, GO:0009058 - biosynthetic process, GO:0005886 - plasma membrane, GO:0005773 - vacuole	TO:0000457 - total biomass yield, TO:0000068 - lodging incidence	PO:0001007 - pollen development stage 
2202	TF1	OSTF1(t), OsTF1	TRANSCRIPTION FACTOR 1	Oryza sativa transcription factor 1(t), Homeobox-leucine zipper protein TF1, Homeodomain transcription factor TF1, HD-ZIP protein TF1, Protein TRANSCRIPTION FACTOR 1	TRANSCRIPTION FACTOR 1		1	This gene encodes a homeodomain protein in rice. Q5ZAY0.	 Seed - Morphological traits - Embryo	Os01g0788800	LOC_Os01g57890.2, LOC_Os01g57890.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
2203	qAL-1(t)	qAl-1(t)	Aluminum tolerance (QTL)-1(t)	Aluminum tolerance (QTL)-1(t)			1	Aluminum tolerance QTL, located between two markers, C86 and R2625 on the chromosome 1.	 Tolerance and resistance - Stress tolerance								
2204	qAL-2(t)	qAl-2(t)	Aluminum tolerance (QTL)-2(t)	Aluminum tolerance (QTL)-2(t)			2	Aluminum tolerance QTL, located between two markers, R2510 and R2460 on the chromosome 2.	 Tolerance and resistance - Stress tolerance								
2205	qAL-6(t)	qAl-6(t)	Alminum tolerance (QTL)-6(t)	Alminum tolerance (QTL)-6(t)			6	Aluminum tolerance QTL, located between two markers, S1520 and G200 on the chromosome 6.	 Tolerance and resistance - Stress tolerance								
2206	RPP16	Rpp16(t), ERG3, OsERG3	PHLOEM PROTEIN 16	Elicitor-responsive protein 3, 16 kDa phloem protein	PHLOEM PROTEIN 16		4	Rpp16 is predominantly expressed in phloem tissues and is likely to be involved in phloem development and/or function. rice phloem protein. Q0JBH9(japonica), Q25AG5(indica). AF090698.	 Biochemical character	Os04g0531100	LOC_Os04g44870.1				GO:0010088 - phloem development		
2207	RPP17	Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b	PHLOEM PROTEIN 17	Elicitor-responsive protein 1, Fungal elicitor immediate early-responsive gene 1 protein, 17 kDa phloem protein	PHLOEM PROTEIN 17		1	Rpp17 is predominantly expressed in the phloem tissues as Rpp16. rice phloem protein. A2WWV5(indica), Q0JHU5(japonica). U95135, U95136, AF512505. up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0841700	LOC_Os01g62430.3, LOC_Os01g62430.2, LOC_Os01g62430.1				GO:0005737 - cytoplasm, GO:0005544 - calcium-dependent phospholipid binding, GO:0005886 - plasma membrane, GO:0009790 - embryonic development, GO:0005509 - calcium ion binding, GO:0010088 - phloem development		
2208	SUT2	OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5	SUCROSE TRANSPORTER 2	sucrose transporter2(t), Sucrose transport protein 2, Sucrose permease 2 ; Sucrose-proton symporter 2, Sucrose transporter 2, Sucrose transporter-2, SUC4-like protein, sucrose transporter 2M	SUCROSE TRANSPORTER 2		12	AB091672. A2ZN77(indica). Q0ILJ3(japonica). PO:0000003; whole plant. DQ072592. HQ540307. OsSUT5 in Lu et al. 2017.	 Biochemical character,  Vegetative organ - Culm	Os12g0641400	LOC_Os12g44380.3, LOC_Os12g44380.2, LOC_Os12g44380.1	GR:0061316			GO:0008515 - sucrose transmembrane transporter activity, GO:0015293 - symporter activity, GO:0005887 - integral to plasma membrane, GO:0055085 - transmembrane transport, GO:0008519 - ammonium transmembrane transporter activity, GO:0015770 - sucrose transport, GO:0016020 - membrane	TO:0000401 - plant growth hormone sensitivity, TO:0000207 - plant height, TO:0000333 - sugar content	PO:0000003 - whole plant 
2209	SUT3	OsSUT3(t), OsSUT3, SUC3, OsSUT2	SUCROSE TRANSPORTER 3	sucrose transporter3(t)	SUCROSE TRANSPORTER 3		10	AB071809, AF419298. Q948L0. Q944W2. Sequence alignment of OsSUT2 is identical to that of OsSUT3 (accession no. AB071809 by Hirose et al) (Ngampanya et al. 2002). OsSUT2 in Ngampanya et al. 2002.	 Biochemical character	Os10g0404500	LOC_Os10g26470.1				GO:0015293 - symporter activity, GO:0016021 - integral to membrane, GO:0015770 - sucrose transport, GO:0008643 - carbohydrate transport, GO:0005985 - sucrose metabolic process, GO:0005886 - plasma membrane, GO:0008515 - sucrose transmembrane transporter activity		
2210	SUT4	OsSUT4(t), OsSUT4	SUCROSE TRANSPORTER 4	sucrose transporter4(t)	SUCROSE TRANSPORTER 4		2	AB091673. Q6YK44.	 Biochemical character	Os02g0827200	LOC_Os02g58080.1				GO:0005985 - sucrose metabolic process, GO:0016021 - integral to membrane, GO:0008643 - carbohydrate transport, GO:0008515 - sucrose transmembrane transporter activity, GO:0009611 - response to wounding, GO:0005886 - plasma membrane, GO:0015770 - sucrose transport, GO:0015293 - symporter activity	TO:0000432 - temperature response trait	
2211	SUT5	OsSUT5(t), OsSUT5Z, OsSUT5	SUCROSE TRANSPORTER 5	sucrose transporter5(t), sucrose transporter 5Z	SUCROSE TRANSPORTER 5		2	AB091674. DQ072593. Q69JW3.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0576600	LOC_Os02g36700.1				GO:0009555 - pollen development, GO:0015770 - sucrose transport, GO:0008515 - sucrose transmembrane transporter activity, GO:0005364 - maltose:hydrogen symporter activity, GO:0042950 - salicin transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0008506 - sucrose:hydrogen symporter activity, GO:0042951 - arbutin transmembrane transporter activity	TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
2213	CPM1	cpm1(t)	LONG COLEOPTILE 1	long coleoptile1(t)				A long coleoptile under white light.	 Vegetative organ - Leaf						GO:0009640 - photomorphogenesis		
2215	ALDP	Aldo, OsALDO, ALDO	CHLOROPLAST ALDOLASE	"chloroplast aldolase, \"Fructose-bisphosphate aldolase, chloroplastic\""	CHLOROPLAST ALDOLASE		11	LOC_Os11g07020. This codes for chloroplast aldolase. Expression of this gene is mesophyll cell-specific and is under the control of leaf cell differentiation. Q40677. D13513.	 Biochemical character	Os11g0171300	LOC_Os11g07020.7, LOC_Os11g07020.6, LOC_Os11g07020.5, LOC_Os11g07020.4, LOC_Os11g07020.1				GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0006096 - glycolysis, GO:0004332 - fructose-bisphosphate aldolase activity, GO:0016832 - aldehyde-lyase activity		
2216	ALDCA	AldC-a	CYTOPLAST ALDOLASE A	cytoplast aldolase-a, aldolase isozyme C-a, aldolase C-a, cytoplasmic aldolase C-a	CYTOPLAST ALDOLASE A			This codes cytoplasmic aldolase. D13512.	 Biochemical character						GO:0016832 - aldehyde-lyase activity		
2217	ALDC1	AldC-1	CYTOPLAST ALDOLASE 1	cytoplast aldolase-1, aldolase isozyme C-1, aldolase C-1, cytoplasmic aldolase C-1	CYTOPLAST ALDOLASE 1		1	This codes cytoplasmic aldolase. D50301, D50307. D16040, D15610. LOC_Os01g67860. Fructose-bisphosphate aldolase. GO:0080167: response to larrikin. The gene (LOC_Os01g67860) appears to be a strong candidate for grain yield under drought underlying QTL qDTY1.1. (Torah et al. 2017).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0905800	LOC_Os01g67860.1				GO:0046686 - response to cadmium ion, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0005740 - mitochondrial envelope, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0016832 - aldehyde-lyase activity, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0006096 - glycolysis, GO:0004332 - fructose-bisphosphate aldolase activity		
2218	ALDC2	AldC-2	CYTOPLAST ALDOLASE 2	cytoplast aldolase-2	CYTOPLAST ALDOLASE 2			This codes cytoplasmic adolase.	 Biochemical character								
2219	ADL1	adl1	ADAXIALIZED LEAF 1	adaxialized leaf-1, ADAXIALIZED LEAF1, shootless 3, Dek1-calpain-like protein		adl1, adl1-1 to adl1-3, adl1-s1, adl1-s2, adl1-g1, and adl1-g2, shl3, shl3-1, shl3-2, odm 63, odm 78	2	LOC_Os02g47970. AB477099. AY062272. It is dwarf and its leaves are rolled in reverse direction (abaxial side becomes indide) and frequently twisted. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. a plant-specific calpain-like cysteine proteinase orthologous to maize DEFECTIVE KERNEL1. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character,  Vegetative organ - Leaf	Os02g0709400	LOC_Os02g47970.1	GR:0060014			GO:0007275 - multicellular organismal development, GO:0005886 - plasma membrane, GO:0006508 - proteolysis, GO:0001708 - cell fate specification, GO:0005622 - intracellular, GO:0004198 - calcium-dependent cysteine-type endopeptidase activity, GO:0009955 - adaxial/abaxial pattern formation	TO:0000085 - leaf rolling, TO:0000576 - stem length, TO:0000492 - leaf shape	PO:0009025 - vascular leaf , PO:0009047 - stem 
2220	EG2	eg2(t), eg2	EXTRA GLUME 2	extra glume-2				The extra palea looks like a single long empty glume. PO:0009039; glume ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060288			GO:0030154 - cell differentiation	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009039 - glume 
2221	qDTH-1-1	qDTH-1-1	Days to heading (QTL)-1-1	Days to heading (QTL)-1-1			1	QTL which controls days to heading,<br>located between two markers, G393 and CDO345 on Chromosome 1.	 Reproductive organ - Heading date								
2222	qDTH-2-1	qDTH-2-1	Days to heading (QTL)-2-1	Days to heading (QTL)-2-1			2	QTL which controls days to heading, located between two markers, G45 and BCD880 on the chromosome 2.	 Reproductive organ - Heading date								
2223	qDTH-2-2	qDTH-2-2	Days to heading (QTL)-2-2	Days to heading (QTL)-2-2			2	QTL which controls days to heading, located between two markers, C424 and G39 on the chromosome 2.	 Reproductive organ - Heading date								
2224	qDTH-3-1	qDTH-3-1	Days to heading (QTL)-3-1	Days to heading (QTL)-3-1			3	QTL which controls days to heading, located between two markers, C12 and Pgi1 on the chromosome 3.	 Reproductive organ - Heading date								
2225	qDTH-4-1	qDTH-4-1	Days to heading (QTL)-4-1	Days to heading (QTL)-4-1			4	QTL which controls days to heading, located between two markers, G271 and C174 on the chromosome 4.	 Reproductive organ - Heading date								
2226	qDTH-4-2	qDTH-4-2	Days to heading (QTL)-4-2	Days to heading (QTL)-4-2			4	QTL which controls days to heading, located between two markers, R1427 and RG214 on the chromosome 4.	 Reproductive organ - Heading date								
2227	qDTH-5-1	qDTH-5-1	Days to heading (QTL)-5-1	Days to heading (QTL)-5-1			5	QTL which controls days to heading, located between two markers, RG480 and C246 on the chromosome 5.	 Reproductive organ - Heading date								
2228	qDTH-5-2	qDTH-5-2	Days to heading (QTL)-5-2	Days to heading (QTL)-5-2			5	QTL which controls days to heading, located between two markers, BCD1823 and Bh2 on the chromosome 5.	 Reproductive organ - Heading date								
2229	qDTH-6-1	qDTH-6-1	Days to heading (QTL)-6-1	Days to heading (QTL)-6-1			6	QTL which controls days to heading, located between two markers, Est2 and Pgi2 on the chromosome 6.	 Reproductive organ - Heading date								
2230	qDTH-6-2	qDTH-6-2	Days to heading (QTL)-6-2	Days to heading (QTL)-6-2			6	QTL which controls days to heading, located between two markers, Cat1 and Amp7 on the chromosome 6.	 Reproductive organ - Heading date								
2231	qDTH-8	qDTH-8	Days to heading (QTL)-8	Days to heading (QTL)-8			8	QTL which controls days to heading, located between two markers, G2132 and G187 on the chromosome 8.	 Reproductive organ - Heading date								
2232	qDTH-9-1	qDTH-9-1	Days to heading (QTL)-9-1	Days to heading (QTL)-9-1			9	QTL which controls days to heading, located between two markers, Awn and Est12 on the chromosome 9.	 Reproductive organ - Heading date								
2233	qDTH-9-2	qDTH-9-2	Days to heading (QTL)-9-2	Days to heading (QTL)-9-2			9	QTL which controls days to heading, located in the neighbor of the marker G385 on the chromosome 9.	 Reproductive organ - Heading date								
2234	qDTH-11-1	qDTH-11-1	Days to heading (QTL)-11-1	Days to heading (QTL)-11-1			11	QTL which controls days to heading, located between two markers, RZ141 and Acid2 on the chromosome 11.	 Reproductive organ - Heading date								
2235	qDTH-11-2	qDTH-11-2	Days to heading (QTL)-11-2	Days to heading (QTL)-11-2			11	QTL which controls days to heading, located in the neighbor of marker CDO365 on the chromosome 11.	 Reproductive organ - Heading date								
2236	qDTH-12	qDTH-12	Days to heading (QTL)-12	Days to heading (QTL)-12			12	QTL which controls days to heading, located between two markers, G1112 and RZ257 on the chromosome 12.	 Reproductive organ - Heading date								
2237	qBVP-1	qBVP-1	Basic vegetative phase (QTL)-1	Basic vegetative phase (QTL)-1			1	QTL which controls the basic vegetative phase, located between wo markers, RG345 and G393 on the chromosome 1.	 Reproductive organ - Heading date								
2238	qBVP-3-1	qBVP-3-1	Basic vegetative phase (QTL)-3-1	Basic vegetative phase (QTL)-3-1			3	QTL which controls the basic vegetative phase, located between two markers, C746 and BCD454 on the chromosome 3.	 Reproductive organ - Heading date								
2239	qBVP-3-2	qBVP-3-2	Basic vegetative phase (QTL)-3-2	Basic vegetative phase (QTL)-3-2			3	QTL which controls the basic vegetative phase, located between two markers, G232 and Pgi1 on the chromosome 3.	 Reproductive organ - Heading date								
2240	qBVP-4	qBVP-4	Basic vegetative phase (QTL)-4	Basic vegetative phase (QTL)-4			4	QTL which controls the basic vegetative phase, located in the neighor of the marker G271 on the chromosome 4.	 Reproductive organ - Heading date								
2241	qBVP-5-1	qBVP-5-1	Basic vegetative phase (QTL)-5-1	Basic vegetative phase (QTL)-5-1			5	QTL which controls the basic vegetative phase, located between two markers, BCD738 and Est13 on the chromosome 5.	 Reproductive organ - Heading date								
2242	qBVP-5-2	qBVP-5-2	Basic vegetative phase (QTL)-5-2	Basic vegetative phase (QTL)-5-2			5	QTL which controls the basic vegetative phase, located between two markers, APAGE1 and RG480 on the chromosome 5.	 Reproductive organ - Heading date								
2243	qBVP-8	qBVP-8	Basic vegetative phase (QTL)-8	Basic vegetative phase (QTL)-8			8	QTL which controls the basic vegetative phase, located between two markers, G2132 and G187 on the chromosome 8.	 Reproductive organ - Heading date								
2244	qBVP-11	qBVP-11	Basic vegetative phase (QTL)-11	Basic vegetative phase (QTL)-11			11	QTL which controls the basic vegetative phase, located between two markers, RZ141 and Acid2 on the chromosome 11.	 Reproductive organ - Heading date								
2245	qPSP-1	qPSP-1	Photoperiod sensitive phase (QTL)-1	Photoperiod sensitive phase (QTL)-1			1	QTL which controls the photoperiod sensitive phase, located between two markers, RG345 and RAPDB1-1 on the chromosome 1.	 Reproductive organ - Heading date								
2246	qPSP-6(Se1?)	qPSP-6(Se1?)	Photoperiod sensitive phase (QTL)-6	Photoperiod sensitive phase (QTL)-6			6	QTL which controls the photoperiod sensitive phase, located between two markers, R2171 and RZ144 on the chromosome 6. It is needed to confirm if this QTL might be the same as Se1.	 Reproductive organ - Heading date								
2247	qPSP-11	qPSP-11	Photoperiod sensitive phase (QTL)-11	Photoperiod sensitive phase (QTL)-11			11	QTL which controls the photoperiod sensitive phase, located in the neighbor of the marker C6a on the chromosome 11.	 Reproductive organ - Heading date								
2248	qTA-2	qTA-2	tiller angle (QTL)-2	tiller angle (QTL)-2			2	QTL which controls tiller angle, located between two markers, RG171 and RG437 on the chromosome 2.	 Vegetative organ - Culm								
2249	qTA-1	qTA-1	tiller angle (QTL)-1	tiller angle (QTL)-1			1	QTL which controls tiller angle, located between two markers, RG173 and RG532 on the chromosome 1.	 Vegetative organ - Culm								
2250	qTA-5	qTA-5	tiller angle (QTL)-5	tiller angle (QTL)-5			5	QTL which controls tiller angle, located between two markers, gl-1 and RG403 on the chromosome 5.	 Vegetative organ - Culm								
2251	qTA-8	qTA-8	tiller angle (QTL)-8	tiller angle (QTL)-8			8	QTL which controls tiller angle, located between two markers, RG20 and RG1034 on the chromosome 8.	 Vegetative organ - Culm								
2252	qLA-1	qLA-1	leaf angle (QTL)-1	leaf angle (QTL)-1			1	QTL which controls leaf angle, located between two markers, RG173 and RG532 on the chromosome 1.	 Vegetative organ - Leaf								
2253	qLA-3	qLA-3	leaf angle (QTL)-3	leaf angle (QTL)-3			3	QTL which controls leaf angle, located between two markers, RG104 and RG348 on the chromosome 3.	 Vegetative organ - Leaf								
2254	qFLA-2	qFLA-2	leaf and flag leaf angles (QTL)-2	leaf and flag leaf angles (QTL)-2			2	QTL which controls leaf and flag leaf angles, located between two markers, RZ206 and RG598b on the chromosome 2.	 Vegetative organ - Leaf								
2255	qFLA-5	qFLA-5	leaf and flag leaf angles (QTL)-5	leaf and flag leaf angles (QTL)-5			5	QTL which controls leaf and flag leaf angles, located between two markers, RG470 and RG346 on the chromosome 5,	 Vegetative organ - Leaf								
2256	qFLA-6	qFLA-6	leaf and flag leaf angles (QTL)-6	leaf and flag leaf angles (QTL)-6			6	QTL which controls leaf and flag leaf angles, located between two markers, C and RG424 on the chromosome 6.	 Vegetative organ - Leaf								
2257	qFLA-7	qFLA-7	leaf and flag leaf angles (QTL)-7	leaf and flag leaf angles (QTL)-7			7	QTL which controls leaf and flag leaf angles, located between two markers, RG711 and RZ687 on the chromosome 7.	 Vegetative organ - Leaf								
2258	qFLA-9	qFLA-9	leaf and flag leaf angles (QTL)-9	leaf and flag leaf angles (QTL)-9			9	QTL which controls leaf and flag leaf angles, located between two markers, RG757 and RG463 on the chromosome 9.	 Vegetative organ - Leaf								
2259	qPSP-8	qPSP-8	Photoperiod sensitive phase (QTL)-8	Photoperiod sensitive phase (QTL)-8			8	QTL which controls photoperiod sensitive phase, located between two markers G2132 and G187 on the chromosome 8.	 Reproductive organ - Heading date								
2260	NAC3	OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067	NAC DOMAIN-CONTAINING PROTEIN 3	OsNAC gene-3, ONNAC GENE 3, NAC domain-containing protein 67	NAC DOMAIN-CONTAINING PROTEIN 3		7	This gene controls the formation of shoot apical mristem, organ separation and flower morphogenesis.  AB028182. Q7EZT1. LOC_Os07g12340.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Stress tolerance	Os07g0225300	LOC_Os07g12340.1	GR:0060582			GO:0009409 - response to cold, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding	TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity	
2261	NAC5	OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009	NAC DOMAIN-CONTAINING PROTEIN 5	NAC 5, NAC domain-containing protein 71, ONNAC GENE 5, OsNAC gene-5, NAC domain-containing protein 9, NAC domain-containing protein 20, OnNAC gene-5	NAC DOMAIN-CONTAINING PROTEIN 5		11	This gene controls the formation of shoot apical meristem, organ separation and flower morphogenesis. AB028184. Q53NF7. LOC_Os11g08210. JA-responsive SNAC (stress-responsive NAC) factor.  a  senescence-associated ABA-dependent NAC transcription factor.  GO:1901001: negative regulation of response to salt stress.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Stress tolerance	Os11g0184900	LOC_Os11g08210.1	GR:0060584			GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010150 - leaf senescence, GO:0009737 - response to abscisic acid stimulus, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002661 - seed maturation, TO:0000249 - leaf senescence, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0001054 - 4 leaf senescence stage 
2262	NAC4	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068	NAC DOMAIN-CONTAINING PROTEIN 4	NAC 4, NAC domain-containing protein 68, ONNAC GENE 4, OsNAC gene-4, OnNAC gene-4	NAC DOMAIN-CONTAINING PROTEIN 4		1	This gene controls the formation of shoot apical meristem, organ separation and flower morphogenesis. AB028183. Q52QH4. Overexpression of OsNAC4 leads to hypersensitive response cell death (Kaneda et al. 2009). GO:1902183: regulation of shoot apical meristem development.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0816100	LOC_Os01g60020.1	GR:0060583			GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0003677 - DNA binding, GO:0048439 - flower morphogenesis, GO:0034052 - positive regulation of plant-type hypersensitive response, GO:0010446 - response to alkalinity	TO:0000172 - jasmonic acid sensitivity, TO:0000315 - bacterial disease resistance, TO:0000112 - disease resistance, TO:0006020 - shoot apical meristem development, TO:0000622 - flower development trait, TO:0000481 - alkali sensitivity	PO:0007615 - flower development stage 
2263	NAC6	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2	NAC DOMAIN-CONTAINING PROTEIN 6	NAC 6, OsNac gene-6, O. sativa gene with the NAC domain 6, OsNAC6 protein, NAC domain-containing protein 48, stress-responsive NAC transcription factor SNAC2, stress-responsive NAC transcription factor 2	NAC DOMAIN-CONTAINING PROTEIN 6		1	LOC_Os01g66120. AB028185. AU162697, AU056522. BF889475. Q7F2L3. This gene controls the formation of shoot apical meristem, organ separation and flower morphogenesis. GO:2000280: regulation of root development.	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0884300	LOC_Os01g66120.3, LOC_Os01g66120.1	GR:0061485			GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0009611 - response to wounding, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0048364 - root development, GO:0030418 - nicotianamine biosynthetic process, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0045449 - regulation of transcription, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0009751 - response to salicylic acid stimulus, GO:0009609 - response to symbiotic bacterium, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000112 - disease resistance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000227 - root length, TO:0000084 - root number, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000043 - root anatomy and morphology trait, TO:0000656 - root development trait, TO:0000276 - drought tolerance	PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage 
2264	LHD1	Lhd1(t)	LATE HEADING 1	Late heading1(t)			6	Late heading gene introduced from O. glumaepatula, located in the neighbor of RFLP marker XNpb27 on the chromosome 6.	 Reproductive organ - Heading date						GO:0009648 - photoperiodism		
2265	LHD2	Lhd2(t)	LATE HEADING 2	Late heading2(t)			7	Late heading gene introduced from O. glumaepatula, located between two RFLP markers, C383 and C145  on the chromosome 7.	 Reproductive organ - Heading date						GO:0009648 - photoperiodism		
2266	SK1	sk1(t)**, slk1, sk1*	SLENDER KERNEL 1	slender kernel1(t)**, slender kernel-1			2	slender kernel gene introduced from O. glumaepatula. PO:0009010; seed.	 Seed - Morphological traits - Grain shape			GR:0061469			GO:0007275 - multicellular organismal development	TO:0000149 - seed width, TO:0000287 - brown rice shape	PO:0009010 - seed 
2267	SK2	Sk2(t)**, Slk2, Sk2*	SLENDER  KERNEL 2	Slender kernel2(t), Slender kernel-2			5	slender kernel gene introduced from O. glumaepatula. Dominant gene. PO:0009010; seed.	 Seed - Morphological traits - Grain shape			GR:0061470			GO:0007275 - multicellular organismal development	TO:0000149 - seed width, TO:0000287 - brown rice shape	PO:0009010 - seed 
2268	AMT1;1	"OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, \"OsAMT1, 1\", OsAMT1.1, AMT1.1, FCO12"	AMMONIUM TRANSPORTER-1;1	"ammonium transporter-1;1, ammonium transporter 1;1, Ammonium transporter 1 member 1, Ammonium transporter-1, ammonium transporter 1-1, \"NH4+ transporter 1, 1\", NH4+ transporter 1, Functioning in Cesium Over-transport 12"	AMMONIUM TRANSPORTER-1;1		4	LOC_Os04g43070. Q7XQ12. AF289477, AF001505. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0509600	LOC_Os04g43070.1	GR:0061104			GO:0015696 - ammonium transport, GO:0008519 - ammonium transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0042594 - response to starvation, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0016020 - membrane, GO:0009267 - cellular response to starvation		
2269	AMT1;2	"OsAMT1;2, AMT1-2, Osamt1-3, \"OsAMT1, 3\", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2"	AMMONIUM TRANSPORTER-1; 2	"ammonium transporter-1;2, ammonium transporter 1;2, Ammonium transporter 1 member 2, ammonium transporter 1-3, \"NH4+ transporter 1, 3\""	AMMONIUM TRANSPORTER-1; 2		2	LOC_Os02g40730. ammonium transporter. Q6K9G1. AF289479, AU032209. GO:0080167:response to karrikin. OsAMT1.3 in Fan et al. 2014, Yang et al. 2014, Zhao et al. 2014, Sun et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0620600	LOC_Os02g40730.1				GO:0008519 - ammonium transmembrane transporter activity, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0015398 - high affinity secondary active ammonium transmembrane transporter activity, GO:0009737 - response to abscisic acid stimulus, GO:0015696 - ammonium transport, GO:0015843 - methylammonium transport, GO:0051258 - protein polymerization, GO:0009624 - response to nematode, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009267 - cellular response to starvation		
2270	AMT1;3	"OsAMT1;3, AMT1-3, Osamt1-2, \"OsAMT1, 2\", OsAMT1;2, OsAMT1.3, AMT1.2"	AMMONIUM TRANSPORTER-1; 3	"ammonium transporter-1;3, ammonium transporter 1;3, Ammonium transporter 1 member 3, ammonium transporter 1-2, \"NH4+ transporter 1, 2\""	AMMONIUM TRANSPORTER-1; 3		2	ammonium transporter. Q6K9G3. AF289478. GO:0080167: response to karrikin. OsAMT1.2 in Fan et al. 2014, Zhao et al. 2014, Huang et al. 2018, Sun et al. 2018.	 Biochemical character	Os02g0620500	LOC_Os02g40710.1				GO:0008519 - ammonium transmembrane transporter activity, GO:0015696 - ammonium transport, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0009624 - response to nematode, GO:0009737 - response to abscisic acid stimulus, GO:0015843 - methylammonium transport, GO:0051258 - protein polymerization, GO:0015398 - high affinity secondary active ammonium transmembrane transporter activity		
2271	HD9	Hd9(t), qHD9(t)	Heading date (QTL)-9(t)	Heading date (QTL)-9(t)			3	Hd9 introduced into 'Nipponbare' delayed by 7 days compared with the heading of 'Nipponbare' under long day conditions, and 4 days under natural daylength. Under short day conditions, there was no difference.	 Reproductive organ - Heading date								
2272	HD7	Hd7(t), qHD7(t)	Heading date (QTL)-7(t)	Heading date (QTL)-7(t)			2		 Reproductive organ - Heading date								
2274	HD2	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2	Heading date 2	"Heading date (QTL)-2(t), Heading date 2, PSEUDO-RESPONSE REGULATOR 37, PSEUDO RESPONSE REGULATOR 37, pseudo-response regulator 4, Days to heading 7, Days to heading on chromosome 7, CCT domain-containing gene 28, CCT (CO, CO-LIKE and TOC1) domain protein 28, CCT domain protein 28, \"grain number, plant height and heading date 7.1\", Early heading7-2, Heading date 7.2"		prr37, PRR37-2a, PRR37(H143), PRR37(M23), PRR37-1, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2, PRR37-2a	7	LOC_Os07g49460. KF977867, KF977868, KF977869, KF815740. AB189039, AB189042. Q0D3B6, A2YQ93. GO:0035556: intracellular signal transduction. a rice ortholog of Arabidopsis gene for circadian clock component. a true ortholog of Arabidopsis PRR7. Our data showed that HD7.2 (from Oryza rufipogon) is likely a novel OsPRR37 allele (Jing et al. 2018).	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os07g0695100	LOC_Os07g49460.4, LOC_Os07g49460.3, LOC_Os07g49460.2, LOC_Os07g49460.1				GO:0048511 - rhythmic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0000156 - two-component response regulator activity	TO:0002616 - flowering time, TO:0000040 - panicle length, TO:0000396 - grain yield, TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	
2275	HD4	Hd4(t), qHD4(t), qHD4	HEADING DATE 4	Heading date (QTL)-4(t)			7	E1 might be allelic with Hd4.	 Reproductive organ - Heading date						GO:0009648 - photoperiodism		
2278	GA3OX1	OsGA3ox1, GA3ox1, OsGA3OX1	GIBBERELLIN 3BETA-HYDROXYLASE 1	GA 3beta-hydroxylase1, GA 3beta-hydroxylase 1, Gibberellin(GA)-3 beta-hydroxylase-1	GIBBERELLIN 3BETA-HYDROXYLASE 1		5	LOC_Os05g08540. This gene controls some steps of gibberellin synthesis. The defect on this process causes dwarfism of rice. This gene is located on chromosome 5 at 33.6cM. AC144738. rice ortholog of Arabidopsis GA4.	 Biochemical character	Os05g0178100	LOC_Os05g08540.1	GR:0061381			GO:0009686 - gibberellin biosynthetic process, GO:0042446 - hormone biosynthetic process, GO:0017000 - antibiotic biosynthetic process, GO:0016216 - isopenicillin-N synthase activity, GO:0016707 - gibberellin 3-beta-dioxygenase activity, GO:0009685 - gibberellin metabolic process, GO:0009536 - plastid, GO:0005506 - iron ion binding		
2280	RA	RA(t)	ALLERGEN	Rice Allergen(t)	ALLERGEN				 Biochemical character								
2281	RPL12-1	rpl12-1	RIBOSOMAL PROTEIN L 12	ribosomal protein L12-1	RIBOSOMAL PROTEIN L 12			This gene codes the chloroplast ribosomal protein L12.	 Biochemical character						GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
2282	RPL12-2	rpl12-2, CL12, OsRPL12-2	RIBOSOMAL PROTEIN L12-2	"ribosomal protein L12-2, \"50S ribosomal protein L12, chloroplastic\", chloroplast ribosomal protein L12"	RIBOSOMAL PROTEIN L12-2		1	This gene codes the chloroplast protein L12. RIBOSOMAL PROTEIN L 12. O22386. AB022674.	 Biochemical character	Os01g0662300	LOC_Os01g47330.1				GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
2283	SEPAT	se-pat(t), sepat(t)*(se), sepat(t)*	PHOTOSENSITIVITY PAT	photosensitivity-pat(t), photoperiod-sensitivity from Patpaku			6	se-pat is loosely linked with Se-1 on chromosome 6 and the two genes act additively. However, response to short-day treatment of se-pat is age dependent, that is, the treatment started at the age of 7 weeks old is effective but that at germination stage. PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0061082			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000469 - days to maturity, TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
2284	RGP1	rgp1, OsRab11E2	SMALL GTP-BINDING PROTEIN 1	ras -related GPT-binding protein1, Ras-related protein RGP1, GTP-binding regulatory protein RGP1, small GTP-binding protein OsRab11E2	SMALL GTP-BINDING PROTEIN 1		9	This gene encodes a small GTP-binding protein. Being introduced into rice, this gene causes dwarfisim, early flowering, and high grain yield. P25766. GO:0090404:pollen tube tip.	 Biochemical character	Os09g0281700	LOC_Os09g10940.1				GO:0005525 - GTP binding, GO:0070382 - exocytic vesicle, GO:0045177 - apical part of cell, GO:0007264 - small GTPase mediated signal transduction, GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0080092 - regulation of pollen tube growth, GO:0009860 - pollen tube growth		
2285	qPHO-12(t) (PHO(t))	qPHO-12(t) (PHO(t))	phosphorous deficiency tolerance (QTL)-12(t)	phosphorous deficiency tolerance (QTL)-12(t)			12	This phosphorous deficiency tolerance QTL is located between RFLP markers, RG9 and RG241 on chromosome 12.	 Tolerance and resistance - Stress tolerance								
2286	PMS3	pms3, LDMAR	PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3	photoperiod-sensitive genic male sterility3, long-day-specific male-fertility-associated RNA			12	Male sterile under long-day conditions and fertile under short-day conditions. Located between RFLP markers R2708 and C751/RZ261 on chromosome 12. JQ317784, JQ317784.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os12g0545900	LOC_Os12g36030.3, LOC_Os12g36030.2, LOC_Os12g36030.1				GO:0007275 - multicellular organismal development, GO:0009648 - photoperiodism		
2287	qAC-5-1(t) (qAC-5)	qAC-5-1(t) (qAC-5)	amylose content (QTL)-5-1(t)	amylose content (QTL)-5-1(t)			5	This QTL controls amylose content, located between RFLP markers RG573 and C624 on chromosome 5.	 Seed - Physiological traits - Storage substances								
2288	qGC-2-1(t) (qGC-2)	qGC-2-1(t) (qGC-2)	gel consistency (QTL)-2-1(t)	gel consistency (QTL)-2-1(t)			2	This QTL controls gel consistency, located between two RFLP markers, RG171 and G243A on chromosome 2.	 Seed - Physiological traits - Taste								
2289	qGC-7	qGC-7	gel consistency (QTL)-7	gel consistency (QTL)-7				This QTL controls gel consistency, located between two RFLP markers, TCT122 and RG769 on chromosome 7.	 Seed - Physiological traits - Taste								
2290	qASS-6-1(t)	qASS-6-1(t)	alkali spreading score (QTL)-6-1(t)	alkali spreading score (QTL)-6-1(t)			6	This QTL controls alkali spreading score of rice grain, located between two RFLP markers, CT201 and RZ450.	 Seed - Physiological traits - Taste								
2291	qPGWC-8	qPGWC-8	white core grain percentage (QTL)-8	white core grain percentage (QTL)-8				This QTL controls the percentage of grain with a white core, located between two RFLP markers, G187 and RZ66 on chromosome 8.	 Seed - Physiological traits - Taste								
2292	qPGWC-12	qPGWC-12	white core grain percentage (QTL)-12	white core grain percentage (QTL)-12				This QTL controls the percentage of grain with a white core, located between two RFLP markers, CT462 and RG574 on chromosome 12.	 Seed - Physiological traits - Taste								
2293	qSWC-3	qSWC-3	square of white core (QTL)-3	square of white core (QTL)-3				This QTL controls the square of the white core, the ratio of the wquare of the white core to the square of the white-core kernel. Located between two RFLP markers, CT211A and G1318 on chromosome 3.	 Seed - Physiological traits - Taste								
2294	PDC4	pdc4	PYRUVATE DECARBOXYLASE 4	pyruvate decarboxylase4	PYRUVATE DECARBOXYLASE 4			This gene is located in close proximity to pdc1.	 Biochemical character						GO:0004737 - pyruvate decarboxylase activity, GO:0042867 - pyruvate catabolic process, GO:0045254 - pyruvate dehydrogenase complex		
2295	qPKV-2	qPKV-2	peak viscosity (QTL)-2	peak viscosity (QTL)-2				This QTL controls peak viscosity of pasting curve, located between RFLP markers, GA120 and G357 on chromosome 2.	 Seed - Physiological traits - Taste								
2296	qPKV-12	qPKV-12	peak viscosity (QTL)-12	peak viscosity (QTL)-12				This QTL controls peak viscosity of paste curve measurement, located between RFLP markers, RG413 and G2140 on chromosome 12.	 Seed - Physiological traits - Taste								
2297	qHPV-6-1	qHPV-6-1	hot paste viscosity (QTL)-6-1	hot paste viscosity (QTL)-6-1				This QTL controls hot paste viscosity of paste curve measurement. It is located in the same position of wx on chromosome 6.	 Seed - Physiological traits - Taste								
2298	qHPV-6-2	qHPV-6-2	hot paste viscosity (QTL)-6-2	hot paste viscosity (QTL)-6-2				This QTL controls hot paste viscosity of paste curve measurement. It is located at the same position of alk (alkali degeneration) gene on chromosome 6.	 Seed - Physiological traits - Taste								
2299	qCPV-6-1	qCPV-6-1	cold paste viscosity (QTL)-6-1	cold paste viscosity (QTL)-6-1				This QTL controls cold paste viscosity of paste curve measurement. It is located in the same interval of wx gene on chromosome 6.	 Seed - Physiological traits - Taste								
2300	qCPV-6-2	qCPV-6-2	cold paste viscosity (QTL)-6-2	cold paste viscosity (QTL)-6-2				This QTL controls cold paste viscosity of paste curve measurement.  It is located in the same interval of alk (alkali degeneration) gene on chromosome 6.	 Seed - Physiological traits - Taste								
2301	qCPV-1	qCPV-1	cold paste viscosity (QTL)-1	cold paste viscosity (QTL)-1				This QTL controls cold paste viscosity of paste curve measurement.  Itis located between RFLP markers, C979 and C385 on chromosome 1.	 Seed - Physiological traits - Taste								
2302	qBDV-7	qBDV-7	breakdown viscosity (QTL)-7	breakdown viscosity (QTL)-7				Breakdown viscosity (BDV) is derived from [PKV](Peak viscosity)-[HPV](Hot paste viscosity). This QTL is located between RFLP markers, RG769 and RG528 on chromosome 7.	 Seed - Physiological traits - Taste								
2303	qBDV-1	qBDV-1	breakdown viscosity (QTL)-1	breakdown viscosity (QTL)-1				Breakdown viscosity (BDV) is derived from [PKV](peak viscosity) - [HPV](hot paste viscosity). This QTL is located between RFLP markers, RG612 and C131 on chromosome 1.	 Seed - Physiological traits - Taste								
2304	qBDV-5	qBDV-5	breakdown viscosity (QTL)-5	breakdown viscosity (QTL)-5				Breakdown viscosity is derived from [PKV](peak viscosity) - [HPV](hot paste viscosity). This QTL is located between RFLP markers, RG573 and C624 on chromosome 5.	 Seed - Physiological traits - Taste								
2305	qBDV-6	qBDV-6	breakdwon viscosity (QTL)-6	breakdwon viscosity (QTL)-6				Breakdown viscosity (BDV) is derived from [PKV](peak viscosity) - [HPV](hot paste viscosity). This QTL is located at the same position of Wx gene on chromosome 6.	 Seed - Physiological traits - Taste								
2306	qBDV-12	qBDV-12	breakdown viscosity (QTL)-12	breakdown viscosity (QTL)-12				Breakdown viscosity (BDV) is derived from [PKV](peak viscosity) - [HPV](hot paste viscosity). This QTL is located between RFLP markers, ATT42A and G196 on chromosome 12.	 Seed - Physiological traits - Taste								
2307	qCSV-1	qCSV-1	consistency viscosity (QTL)-1	consistency viscosity (QTL)-1				Consistency viscosity (CSV) is derived from  [CPV](cold paste viscosity) - [HPV](hot paste viscosity).  This QTL is located between RFLP markers, C949 and C385 on chromosome 1.	 Seed - Physiological traits - Taste								
2308	qCSV-6-2	qCSV-6-2	consistency viscosity (QTL)-6-2	consistency viscosity (QTL)-6-2				Consistency viscosity is derived from [CPV](cold paste viscosity) - [HPV](hot paste viscosity). This QTL is located between RFLP markers, CT506 and C235 on chromosome 6.	 Seed - Physiological traits - Taste								
2309	qCSV-6-1	qCSV-6-1	consistency viscosity (QTL)-6-1	consistency viscosity (QTL)-6-1				Consistency viscosity is derived from [CPV](cold paste viscosity) - [HPV](hot paste viscosity).  This QTL is located at the same position of Wx gene on chromosome 6.	 Seed - Physiological traits - Taste								
2310	qCSV-7	qCSV-7	consistency viscosity (QTL)-7	consistency viscosity (QTL)-7				Consistency viscosity is derived from [CPV] (cold paste viscosity) - [HPV] (hot paste viscosity). This QTL is located between RFLP markers, TCT122 and RG769 on chromosome 7.	 Seed - Physiological traits - Taste								
2311	qSBV-1	qSBV-1	setback viscosity (QTL)-1	setback viscosity (QTL)-1				Setback viscosity is derived from [CPV] (cold paste viscosity) - [PKV] (peak viscosity).  This QTL is located between RFLP markers, RG612 and C131 on chromosome 1.	 Seed - Physiological traits - Taste								
2312	qSBV-5-1	qSBV-5-1	setback viscosity (QTL)-5-1	setback viscosity (QTL)-5-1				Setback viscosity is derived from [CPV] (cold paste viscosity) - [PKV] (peak viscosity). This QTL is located between RFLP markers, C624 and G81 on chromosome 5.	 Seed - Physiological traits - Taste								
2313	qSBV-5-2	qSBV-5-2	setback viscosity (QTL)-5-2	setback viscosity (QTL)-5-2				Setback viscosity is derived from [CPV] (cold paste viscosity) - [PKV] (peak viscosity).  This QTL is located between RFLP markers, RG470 and GA41 on chromosome 5.	 Seed - Physiological traits - Taste								
2314	qSBV-6	qSBV-6	setback viscosity (QTL)-6	setback viscosity (QTL)-6				Setback viscosity is derived from [CPV] (cold paste viscosity) - [PKV] (peak viscosity).  This QTL is locate at the same position of Wx gene on chromosome 6.	 Seed - Physiological traits - Taste								
2315	TMS4	tms4(t), ms84, tms4(t)*, tgms-vn1	THERMOSENSITIVE MALE STERILITY 4	thermosensitive male sterility4(t), male sterile-84, thermosensitive male sterility-4			2	This gene is located in the vicinity of AFLP marker E5/M12-600 on chromosome 2. PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061098			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000067 - genic male sterility-thermo sensitive	PO:0009046 - flower , PO:0009066 - anther 
2316	qSH-1-2(t) (qSHT-1)	qSH-1-2(t) (qSHT-1)	shattering (QTL)-1-2(t)	shattering (QTL)-1-2(t)			1	This QTL controls seed shattering, being located between markers, G393 and OP on chromosome 1.	 Seed - Physiological traits - Shattering								
2317	qSH-4-2(t) (qSHT-4)	qSH-4-2(t) (qSHT-4)	seed shattering (QTL)-4-2(t)	seed shattering (QTL)-4-2(t)			4	This QTL controls seed shattering, being located between markers, CDO244 and RG214 on chromosome 4.	 Seed - Physiological traits - Shattering								
2318	qSH-8-1(t) (qSHT-8)	qSH-8-1(t) (qSHT-8)	shattering (QTL)-8-1(t)	shattering (QTL)-8-1(t)			8	This QTL controls seed shattering, being located between markers, G187 and Amp2 on chromosome 8.	 Seed - Physiological traits - Shattering								
2319	qSH-11-1(t) (qSHT-11)	qSH-11-1(t) (qSHT-11)	shattering (QTL)-11-1(t)	shattering (QTL)-11-1(t)			11	This QTL controls seed shattering, being located between markers, G24 and APAGE2 on chromosome 11.	 Seed - Physiological traits - Shattering								
2320	qDOR-2	qDOR-2	seed dormancy (QTL)-2	seed dormancy (QTL)-2				This QTL controls seed dormancy, being located between markers, Amp1 and RZ476 on chromosome 2.	 Seed - Physiological traits - Dormancy								
2321	qDOR-3-1	qDOR-3-1	seed dormancy (QTL)-3-1	seed dormancy (QTL)-3-1				This QTL controls seed dormancy, being located between markers, G144 and BCD454 on chromosome 3.	 Seed - Physiological traits - Dormancy								
2322	qDOR-3-2	qDOR-3-2	seed dormancy (QTL)-3-2	seed dormancy (QTL)-3-2				This QTL controls seed dormancy, being located between markers, C12 and Pgi1 on chromosome 3.	 Seed - Physiological traits - Dormancy								
2323	qDOR-3-3	qDOR-3-3	seed dormancy (QTL)-3-3	seed dormancy (QTL)-3-3				This QTL controls seed dormancy, being located between markers, R1927 and CDO122 on chromosome 3.	 Seed - Physiological traits - Dormancy								
2324	qDOR-5-1	qDOR-5-1	seed dormancy (QTL)-5-1	seed dormancy (QTL)-5-1				This QTL controls seed dormancy, being located between markers, RZ296 and BCD1072 on chromosome 5.	 Seed - Physiological traits - Dormancy								
2325	qDOR-5-2	qDOR-5-2	seed dormancy (QTL)-5-2	seed dormancy (QTL)-5-2				This QTL controls seed dormancy, being located between markers, Bh2 and R521 on chromosome 5.	 Seed - Physiological traits - Dormancy								
2326	qDOR-6-1	qDOR-6-1	seed dormancy (QTL)-6-1	seed dormancy (QTL)-6-1				This QTL controls seed dormancy, being located between Pgi2 and Amp3 on chromosome 6.	 Seed - Physiological traits - Dormancy								
2327	qDOR-6-2	qDOR-6-2	seed dormancy (QTL)-6-2	seed dormancy (QTL)-6-2				This QTL controls seed dormancy, being located between markers, R2171 and RZ144 on chromosome 6.	 Seed - Physiological traits - Dormancy								
2328	qDOR-8	qDOR-8	seed dormancy (QTL)-8	seed dormancy (QTL)-8				This QTL controls seed dormancy, being located between markers, RG181 and Amp2 on chromosome 8.	 Seed - Physiological traits - Dormancy								
2329	qDOR-9-1	qDOR-9-1	seed dormancy (QTL)-9-1	seed dormancy (QTL)-9-1				This QTL controls seed dormancy, being located between markers Awn and Est12 on chromosome 9.	 Seed - Physiological traits - Dormancy								
2330	qDOR-9-2	qDOR-9-2	seed dormancy (QTL)-9-2	seed dormancy (QTL)-9-2				This QTL controls seed dormancy, being located between markers RZ972 and C506 on chromosome 9.	 Seed - Physiological traits - Dormancy								
2331	qDOR-11-1	qDOR-11-1	seed dormancy (QTL)-11-1	seed dormancy (QTL)-11-1				This QTL controls seed dormancy, being located between markers G24 and RZ141 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2333	qDOR-11-2	qDOR-11-2	seed dormancy (QTL)-11-2	seed dormancy (QTL)-11-2				This QTL controls seed dormancy, being located between markers RZ141 and APAGE2 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2334	qDOR-11-3	qDOR-11-3	seed dormancy (QTL)-11-3	seed dormancy (QTL)-11-3				This QTL controls seed dormancy, being located between markers G257 and CDO365 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2335	qDOR-11-4	qDOR-11-4	seed dormancy (QTL)-11-4	seed dormancy (QTL)-11-4				This QTL controls seed dormancy, being located between markers CDO365 and C6a on chromosome 11.	 Seed - Physiological traits - Dormancy								
2336	qDOR-11-5	qDOR-11-5	seed dormancy (QTL)-11-5	seed dormancy (QTL)-11-5				This QTL controls seed dormancy, being located between markers R1465 and RG1109 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2337	qDOR-11-6	qDOR-11-6	seed dormancy (QTL)-11-6	seed dormancy (QTL)-11-6				This QTL controls seed dormancy, being located between markers RG1109 and RZ536 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2338	qCMS-1-1(t) (QCMS1.1)	qCMS-1-1(t) (QCMS1.1)	cell membrane stability (QTL)-1-1(t)	cell membrane stability (QTL)-1-1(t)			1	Cell membrane stability is one of the mojor selection indices of drought torelance in cereals. This QTL is located between markers CDO345 and ME10-14 on chromosome 1.	 Tolerance and resistance - Stress tolerance								
2339	qCMS-3-1(t) (QCMS3.1)	qCMS-3-1(t) (QCMS3.1)	cell membrane stability (QTL)-3-1(t)	cell membrane stability (QTL)-3-1(t)			3	Cell membrane stability is one of the mojor selection indices of drought tolerance in cereals. This QTL is located between markers EM11-2 and RZ403 on chromosome 3.	 Tolerance and resistance - Stress tolerance								
2340	qCMS-7-1(t) (QCMS7.1)	qCMS-7-1(t) (QCMS7.1)	cell membrane stability (QTL)-7-1(t)	cell membrane stability (QTL)-7-1(t)			7	Cell membrane stability is one of the major selection indices of drought tolerance in celeals. This QTL is located between markers EM17-3 and ME2-15 on chromosome 7.	 Tolerance and resistance - Stress tolerance								
2341	qCMS-8-1(t) (QCMS8.1)	qCMS-8-1(t) (QCMS8.1)	cell membrane stability (QTL)-8-1(t)	cell membrane stability (QTL)-8-1(t)			8	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers G2132 and R1394A on chromosome 8.	 Tolerance and resistance - Stress tolerance								
2342	qCMS-8-2(t) (QCMS8.2)	qCMS-8-2(t) (QCMS8.2)	cell membrane stability (QTL)-8-2(t)	cell membrane stability (QTL)-8-2(t)			8	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers EM18-5 and RG598 on chromosome 8.	 Tolerance and resistance - Stress tolerance								
2343	qCMS-9-1(t) (QCMS9.1)	qCMS-9-1(t) (QCMS9.1)	cell membrane stability (QTL)-9-1(t)	cell membrane stability (QTL)-9-1(t)			9	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers RZ698 and RM219.	 Tolerance and resistance - Stress tolerance								
2344	qCMS-9-2(t) (QCMS9.2)	qCMS-9-2(t) (QCMS9.2)	cell membrane stability (QTL)-9-2(t)	cell membrane stability (QTL)-9-2(t)			9	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers ME9-6 and K985 ib chromosome 9.	 Tolerance and resistance - Stress tolerance								
2345	qCMS-11-1(t) (QCMS11.1)	qCMS-11-1(t) (QCMS11.1)	cell membrane stability (QTL)-11-1(t)	cell membrane stability (QTL)-11-1(t)			11	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers CDO365 and ME6-7 on chromosome 11.	 Tolerance and resistance - Stress tolerance								
2346	qCMS-12-1(t) (QCMS12.1)	qCMS-12-1(t) (QCMS12.1)	cell membrane stability (QTL)-12-1(t)	cell membrane stability (QTL)-12-1(t)			12	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers EM19-5 and RG901 on chromosome 12.	 Tolerance and resistance - Stress tolerance								
2347	qYD-7-1 (yd7a)	qYD-7-1 (yd7a)	yield (QTL)-7-1	yield (QTL)-7-1			7	This QTL controls grain yield, being located between markers C1023 and RG128 in 1994 and R1440 and C1023 in 1995 on chromosome 7.	 Character as QTL - Yield and productivity								
2348	qYD-8 (yd8)	qYD-8 (yd8)	yield (QTL)-8	yield (QTL)-8			8	This QTL controls grain yield, being located between markers C483 and C347 on chromosome 8.	 Character as QTL - Yield and productivity								
2349	qYD-6 (yd6)	qYD-6 (yd6)	yield (QTL)-6	yield (QTL)-6			6	This QTL controls grain yield, being located between markers R2147 and RG424 on chromosome 6.	 Character as QTL - Yield and productivity								
2350	qYD-7-2 (yd7b)	qYD-7-2 (yd7b)	yield (QTL)-7-2	yield (QTL)-7-2			7	This QTL controls grain yield, being located between markers R1789 and RM18 on chromosome 7.	 Character as QTL - Yield and productivity								
2351	qTP-1 (tp1)	qTP-1 (tp1)	tillers per plant (QTL)-1	tillers per plant (QTL)-1			1	This QTL controls number of tillers per plant, being located between markers G359 and RG532 on chromosome 1.	 Character as QTL - Yield and productivity								
2352	qTP-7-1 (tp7a)	qTP-7-1 (tp7a)	tillers per plant (QTL)-7-1	tillers per plant (QTL)-7-1			7	This QTL controls number of tillers per plant, being located between R1789 and RM18 on chromosome 7.	 Character as QTL - Yield and productivity								
2353	qTP-7-2 (tp7b)	qTP-7-2 (tp7b)	tillers per plant (QTL)-7-2	tillers per plant (QTL)-7-2			7	This QTL controls number of tillers per plant, being located between markers C1023 and RG128 on chromosome 7.	 Character as QTL - Yield and productivity								
2354	qGP-3 (gp3)	qGP-3 (gp3)	grains per panicle (QTL)-3	grains per panicle (QTL)-3			3	This QTL controls grain number per panicle, being located between markers C269 and C1087 on chromosome 3.	 Character as QTL - Yield and productivity								
2355	qGP-5-1 (gp5a)	qGP-5-1 (gp5a)	grains per panicle (QTL)-5-1	grains per panicle (QTL)-5-1			5	This QTL controls grain number per panicle, being located between markers RG360 and C734 on chromosome 5.	 Character as QTL - Yield and productivity								
2356	qGP-7-1 (gp7a)	qGP-7-1 (gp7a)	grains per panicle (QTL)-7-1	grains per panicle (QTL)-7-1			7	This QTL controls grain number per panicle, being located between markers C1023 and RG128 (in 1994) and between R1440 and C1023 (in 1995) on chromosome 7.	 Character as QTL - Yield and productivity								
2357	qGP-1 (gp1)	qGP-1 (gp1)	grains per panicle (QTL)-1	grains per panicle (QTL)-1			1	This QTL controls grain number per panicle, being located between markers RG532 and RG173 on chromosome 1.	 Character as QTL - Yield and productivity								
2358	qGP-5-2 (gp5b)	qGP-5-2 (gp5b)	grains per panicle (QTL)-5-2	grains per panicle (QTL)-5-2			5	This QTL controls grain number per panicle, being located between markers C624 and C246a on chromosome 5.	 Character as QTL - Yield and productivity								
2359	qGP-6 (gp6)	qGP-6 (gp6)	grains per panicle (QTL)-6	grains per panicle (QTL)-6			6	This QTL controls grain number per panicle, being located between markers G200 and R1014 on chromosome 6.	 Character as QTL - Yield and productivity								
2360	qGP-7-2 (gp7b)	qGP-7-2 (gp7b)	grains per panicle (QTL)-7-2	grains per panicle (QTL)-7-2			7	This QTL controls grain number per panicle, being located between markers R1789 and RM18 on chromosome 7.	 Character as QTL - Yield and productivity								
2361	qGW-3-1(t) (gw3)	qGW-3-1(t) (gw3)	grain weight (QTL)-3-1(t)	grain weight (QTL)-3-1(t)			3	This QTL controls grain weight, being located between markers C1087 and R1966 on chromosome 3.	 Character as QTL - Yield and productivity								
2362	qGW-5-1(t) (gw5a)	qGW-5-1(t) (gw5a)	grain weight (QTL)-5-1(t)	grain weight (QTL)-5-1(t)			5	This QTL controls grain weight, being located between markers RG360 and R1674 on chromosome 5.	 Character as QTL - Yield and productivity								
2363	qGW-5-2(t) (gw5b)	qGW-5-2(t) (gw5b)	grain weight (QTL)-5-2(t)	grain weight (QTL)-5-2(t)			5	This QTL controls grain weight, being located between markers C246a and RG528 on chromosome 5.	 Character as QTL - Yield and productivity								
2365	qGW-7-1(t) (gw7)	qGW-7-1(t) (gw7)	grain weight (QTL)-7-1(t)	grain weight (QTL)-7-1(t)			7	This QTL controls grain weight, being located between markers C1023 and RG128 on chromosome 7.	 Character as QTL - Yield and productivity								
2366	qGW-11-1(t) (gw11)	qGW-11-1(t) (gw11)	grain weight (QTL)-11-1(t)	grain weight (QTL)-11-1(t)			11	This QTL controls grain weight, being located between markers RM4 and RG98 on chromosome 11.	 Character as QTL - Yield and productivity								
2367	qBLSR-1 (qBlsr1)	qBLSR-1 (qBlsr1)	bacterial leaf streak resistance (QTL)-1	bacterial leaf streak resistance (QTL)-1			1	This QTL controls bacterial leaf streak resistance, being located on chromosome 1.	 Tolerance and resistance - Disease resistance								
2368	qBLSR-2 (qBlsr2)	qBLSR-2 (qBlsr2)	bacterial leaf streak resistance (QTL)-2	bacterial leaf streak resistance (QTL)-2			2	This QTL controls bacterial leaf streak resistance, being located on chromosome 2.	 Tolerance and resistance - Disease resistance								
2369	qBLSR-3-1 (qBlsr3a)	qBLSR-3-1 (qBlsr3a)	bacterial leaf streak resistance (QTL)-3-1	bacterial leaf streak resistance (QTL)-3-1			3	This QTL controls bacterial leaf streak resistance, being located on chromosome 3.	 Tolerance and resistance - Disease resistance								
2370	qBLSR-3-2 (qBlsr3b)	qBLSR-3-2 (qBlsr3b)	bacterial leaf streak resistance (QTL)-3-2	bacterial leaf streak resistance (QTL)-3-2			3	This QTL controls bacterial leaf streak resistance, being located on chromosome 3.	 Tolerance and resistance - Disease resistance								
2371	qBLSR-3-3 (qBlsr3c)	qBLSR-3-3 (qBlsr3c)	bacterial leaf streak resistance (QTL)-3-3	bacterial leaf streak resistance (QTL)-3-3			3	This QTL controls bacterial leaf streak resistance, being located on chromosome 3.	 Tolerance and resistance - Disease resistance								
2372	qBLSR-3-4 (qBlsr3d)	qBLSR-3-4 (qBlsr3d)	bacterial leaf streak resistance (QTL)-3-4	bacterial leaf streak resistance (QTL)-3-4			3	This QTL controls bacterial leaf streak resistance, being located on chromosome 3.	 Tolerance and resistance - Disease resistance								
2373	qBLSR-4-1 (qBlsr4a)	qBLSR-4-1 (qBlsr4a)	bacterial leaf streak resistance (QTL)-4-1	bacterial leaf streak resistance (QTL)-4-1			4	This QTL controls bacterial leaf streak resistance, being located on chromosome 4.	 Tolerance and resistance - Disease resistance								
2374	qBLSR-4-2 (qBlsr4b)	qBLSR-4-2 (qBlsr4b)	bacterial leaf streak resistance (QTL)-4-2	bacterial leaf streak resistance (QTL)-4-2			4	This QTL controls bacterial leaf streak resistance, being located on chromosome 4.	 Tolerance and resistance - Disease resistance								
2375	qBLSR-5-1 (qBlsr5a)	qBLSR-5-1 (qBlsr5a)	bacterial leaf streak resistance (QTL)-5-1	bacterial leaf streak resistance (QTL)-5-1			5	This QTL controls bacterial leaf streak resistance, being located on chromosome 5.	 Tolerance and resistance - Disease resistance								
2376	qBLSR-5-2 (qBlsr5b)	qBLSR-5-2 (qBlsr5b)	bacterial leaf streak resistance (QTL)-5-2	bacterial leaf streak resistance (QTL)-5-2			5	This QTL controls bacterial leaf streak resistance, being located on chromosome 5.	 Tolerance and resistance - Disease resistance								
2377	qBLSR-11 (qBlsr11)	qBLSR-11 (qBlsr11)	bacterial leaf streak resistance (QTL)-11	bacterial leaf streak resistance (QTL)-11			11	This QTL controls bacterial leaf streak resistance, being located on chromosome 11.	 Tolerance and resistance - Disease resistance								
2378	qSB-2	qSB-2	sheath blight resistance (QTL)-2	sheath blight resistance (QTL)-2			2	This QTL controls sheath blight resistance, being located between markers G243 and RM29 (in 1997) and between RM29 and RG171 (in 1998) on chromosome 2.	 Tolerance and resistance - Disease resistance								
2379	qSB-3	qSB-3	sheath blight resistance (QTL)-3	sheath blight resistance (QTL)-3			3	This QTL controls sheath blight resistance, being located between markers R250 and C746 on chromosome 3.	 Tolerance and resistance - Disease resistance								
2380	qSB-7	qSB-7	sheath blight resistance (QTL)-7	sheath blight resistance (QTL)-7			7	This QTL controls sheath blight resistance, being located between markers RG30 and RG477 on chromosome 7.	 Tolerance and resistance - Disease resistance								
2381	qSB-11	qSB-11	sheath blight resistance (QTL)-11	sheath blight resistance (QTL)-11			11	This QTL cotrols sheath blight resistance, being located between markers G44 and RG118 on chromosome 11.	 Tolerance and resistance - Disease resistance								
2382	qSB-9-1	qSB-9-1	sheath blight resistance (QTL)-9-1	sheath blight resistance (QTL)-9-1			9	This QTL controls sheath blight resistance, being located between markers C397 and G103 on chromosome 9.	 Tolerance and resistance - Disease resistance								
2383	qSB-9-2	qSB-9-2	sheath blight resistance (QTL)-9-2	sheath blight resistance (QTL)-9-2			9	This QTL controls sheath blight resistance, being located between markers RG570 and C356 on chromosome 9.	 Tolerance and resistance - Disease resistance								
2384	qHD-2(t)(qHD-2)	qHD-2(t)(qHD-2)	heading date (QTL)-2(t)	heading date (QTL)-2(t)			2	This QTL controls heading date, being located between markers RM263 and C424 on chromosome 2.	 Reproductive organ - Heading date								
2385	qHD-3-1	qHD-3-1, qHD-3-1(t)(qHD-3)	heading date (QTL)-3-1	heading date (QTL)-3-1			3	This QTL controls heading date, being located between markers G164 and RM227 on chromosome 3.	 Reproductive organ - Heading date								
2386	qHD-5(t)(qHD-5)	qHD-5(t)(qHD-5)	heading date (QTL)-5(t)	heading date (QTL)-5(t)			5	This QTL controls heading date, being located between markers C624 and RG13 on chromosome 5.	 Reproductive organ - Heading date								
2387	qHD-7-4(t)(qHD-7)	qHD-7-4(t)(qHD-7)	heading date (QTL)-7-4(t)	heading date (QTL)-7-4(t)			7	This QTL controls heading date, being located between markers RG30 and RG477 on chromosome 7.	 Reproductive organ - Heading date								
2388	qPH-3-1(t)	qPH-3-1(t)	plant height (QTL)-3-1(t)	plant height (QTL)-3-1(t)			3	This QTL controls plant height, being located between markers G164 and RM227 on chromosome 3.	 Vegetative organ - Culm								
2389	qPH-4-1(t)	qPH-4-1(t)	plant height (QTL)-4-1(t)	plant height (QTL)-4-1(t)			4	This QTL controls plant height, being located between markers R738 and C513 on chromosome 4.	 Vegetative organ - Culm								
2390	qPH-11-1(t)	qPH-11-1(t)	plant height (QTL)-11-1(t)	plant height (QTL)-11-1(t)			11	This QTL controls plant height, being located between markers RZ628 and G1112 on chromosome 11.	 Vegetative organ - Culm								
2391	qINE-1(QIne1)	qINE-1(QIne1)	internode elongation (QTL)-1	internode elongation (QTL)-1			1	This QTL afects internode elongation under flooding conditions, being locacted near sd1 gene on chromosome 1.	 Vegetative organ - Culm								
2392	qINE-4(QIne4)	qINE-4(QIne4)	internode elongation (QTL)-4	internode elongation (QTL)-4			4	This QTL affects internode elongation under flooding conditions, being located between RFLP markers P3M1-5 and P3M5-1 on chromosome 4.	 Vegetative organ - Culm								
2395	qESA-6 (esa-1)	qESA-6 (esa-1)	embryo-sac abortion (QTL)-6	embryo-sac abortion (QTL)-6			6	This QTL causes embryo-sac abortion, being located between markers G200 and C235 on chromosome 6.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility								
2396	qESA-12-1 (esa-2)	qESA-12-1 (esa-2)	embryo-sac abortion (QTL)-12-1	embryo-sac abortion (QTL)-12-1			12	This QTL causes embryo-sac abortion, being located between markers RG181 and G1106 on chromosome 12.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility								
2397	qESA-12-2 (esa-3)	qESA-12-2 (esa-3)	embryo-sac abortion (QTL)-12-2	embryo-sac abortion (QTL)-12-2			12	This QTL causes embryo-sac abortion, being located between markers RG323 and RG463 on chromosome 12.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility								
2398	qOA-1-1 (oa1.1)	qOA-1-1 (oa1.1)	osmotic adjustment (QTL)-1-1	osmotic adjustment (QTL)-1-1			1	This QTL controls osmotic adjustment of rice as an index of drought tolerance, being located on chromosome 1 flanked by DNA markers ME2-12 and RG140.	 Tolerance and resistance - Stress tolerance								
2399	qOA-2-1 (oa2.1)	qOA-2-1 (oa2.1)	osmotic adjustment (QTL)-2-1	osmotic adjustment (QTL)-2-1			2	This QTL controls osmotic adjustment as an index of drought tolerance, located on chromosome 2 flanked by DNA markers RM263 and R3393.	 Tolerance and resistance - Stress tolerance								
2400	qOA-3-1 (oa3.1)	qOA-3-1 (oa3.1)	osmotic adjustment (QTL)-3-1	osmotic adjustment (QTL)-3-1			3	This QTL controls osmotic adjustment as an index of drought tolerance, being located on chromosome 3 flanked by DNA markers EM17-1 and C63.	 Tolerance and resistance - Stress tolerance								
2401	qOA-8-1 (oa8.1)	qOA-8-1 (oa8.1)	osmotic adjustment (QTL)-8-1	osmotic adjustment (QTL)-8-1			8	This QTL controls osmotic adjustment as an index of drought tolerance, being located on chromosome 8 flanked by DNA markers G2132 and R1394A.	 Tolerance and resistance - Stress tolerance								
2402	qOA-9-1 (oa9.1)	qOA-9-1 (oa9.1)	osmotic adjustment (QTL)-9-1	osmotic adjustment (QTL)-9-1			9	This QTL controls osmotic adjustment as an index of drought tolerance, being located on chromosome 9 flanked by DNA markers EM14-6 and ME4-13.	 Tolerance and resistance - Stress tolerance								
2403	qRPI-3-1(rpi3.1)	qRPI-3-1(rpi3.1)	root penetration index (QTL)-3-1	root penetration index (QTL)-3-1			3	This QTL controls root penetration index in relation to drought tolerance, being located on chromosome 3 flanked by DNA markers EM19-4 and EM13-1.	 Vegetative organ - Root								
2404	qRPI-4-1(rpi4.1)	qRPI-4-1(rpi4.1)	root penetration index (QTL)-4-1	root penetration index (QTL)-4-1			4	This QTL controls root penetration index in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers EM14-5 and ME2-13.	 Vegetative organ - Root								
2405	qRPI-4-2(rpi4.2)	qRPI-4-2(rpi4.2)	root penetration index (QTL)-4-2	root penetration index (QTL)-4-2			4	This QTL controls root penetration index in relation to drought tolerance, being located on chromosome 4, flanked by DNA markers RG939 and RG476.	 Vegetative organ - Root								
2406	qRPI-12-1(rpi12.1)	qRPI-12-1(rpi12.1)	root penetration index (QTL)-12-1	root penetration index (QTL)-12-1			12	This QTL controls root penetration index in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers ME6-12 and RG9.	 Vegetative organ - Root								
2407	qBRT-2-1(brt2.1)	qBRT-2-1(brt2.1)	basal root thickness (QTL)-2-1	basal root thickness (QTL)-2-1			2	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 2 flanked by DNA markers TGMSP2 and ME9-7.	 Vegetative organ - Root								
2408	qBRT-3-1(brt3.1)	qBRT-3-1(brt3.1)	basal root thickness (QTL)-3-1	basal root thickness (QTL)-3-1			3	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 3 flanked by DNA markers EM19-11 and RZ474.	 Vegetative organ - Root								
2409	qBRT-4-1(brt4.1)	qBRT-4-1(brt4.1)	basal root thickness (QTL)-4-1	basal root thickness (QTL)-4-1			4	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 4 flanked DNA markers RG939 and RG476.	 Vegetative organ - Root								
2410	qBRT-8-1(brt8.1)	qBRT-8-1(brt8.1)	basal root thickness (QTL)-8-1	basal root thickness (QTL)-8-1			8	This QTL controls basal root thickness in relation to dought tolerance, being located on chromosome 8 flanked by DNA markers RZ997 and EM14-1.	 Vegetative organ - Root								
2411	qBRT-9-1(brt9.1)	qBRT-9-1(brt9.1)	basal root thickness (QTL)-9-1	basal root thickness (QTL)-9-1			9	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 9 flanked by DNA markers ME2-17 and C711.	 Vegetative organ - Root								
2412	qBRT-12-1(brt12.1)	qBRT-12-1(brt12.1)	basal root thickness (QTL)-12-1	basal root thickness (QTL)-12-1			12	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers ME10-3 and ME6-6.	 Vegetative organ - Root								
2413	qPRT-1-1(prt1.1)	qPRT-1-1(prt1.1)	penetrated root thickness (QTL)-1-1	penetrated root thickness (QTL)-1-1			1	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 1 flanked by DNA markers ME6-4 and EM18-10.	 Vegetative organ - Root								
2414	qPRT-1-2(prt1.2)	qPRT-1-2(prt1.2)	penetrated root thickness (QTL)-1-2	penetrated root thickness (QTL)-1-2			1	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 1 flanked by DNA markers RG957 and RG345.	 Vegetative organ - Root								
2415	qPRT-2-1(prt2.1)	qPRT-2-1(prt2.1)	penetrated root thickness (QTL)-2-1	penetrated root thickness (QTL)-2-1			2	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 2 flanked by DNA markers ME2-7 and EMP2-7.	 Vegetative organ - Root								
2416	qPRT-2-2(prt2.2)	qPRT-2-2(prt2.2)	penetrated root thickness (QTL)-2-2	penetrated root thickness (QTL)-2-2			2	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 2 flanked by DNA markers ME9-7 and K706.	 Vegetative organ - Root								
2417	qPRT-4-1(prt4.1)	qPRT-4-1(prt4.1)	penetrated root thickness (QTL)-4-1	penetrated root thickness (QTL)-4-1			4	This QTL controls penetrated root thichness in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers RG939 and RG476.	 Vegetative organ - Root								
2418	qPRT-6-1(prt6.1)	qPRT-6-1(prt6.1)	penetrated root thickness (QTL)-6-1	penetrated root thickness (QTL)-6-1			6	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers R2549 and RG716.	 Vegetative organ - Root								
2419	qPRT-7-1(prt7.1)	qPRT-7-1(prt7.1)	penetrated root thickness (QTL)-7-1	penetrated root thickness (QTL)-7-1			7	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 7 flanked by DNA markers RG417 and EM17-3.	 Vegetative organ - Root								
2420	qPRT-9-1(prt9.1)	qPRT-9-1(prt9.1)	penetrated root thickness (QTL)-9-1	penetrated root thickness (QTL)-9-1			9	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 9 flanked by DNA markers RG553 and EM14-6.	 Vegetative organ - Root								
2421	qPRT-9-2(prt9.2)	qPRT-9-2(prt9.2)	penetrated root thickness (QTL)-9-2	penetrated root thickness (QTL)-9-2			9	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 9 flanked by DNA markers ME9-6 and K985.	 Vegetative organ - Root								
2422	qPRT-12-1(prt12.1)	qPRT-12-1(prt12.1)	penetrated root thickness (QTL)-12-1	penetrated root thickness (QTL)-12-1			12	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers RG9 and ME10-1.	 Vegetative organ - Root								
2423	qPRT-12-2(prt12.2)	qPRT-12-2(prt12.2)	penetrated root thickness (QTL)-12-2	penetrated root thickness (QTL)-12-2			12	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers ME4-5 and ME10-8.	 Vegetative organ - Root								
2424	qRPF-2-1(rpf2.1)	qRPF-2-1(rpf2.1)	root pulling force (QTL)-2-1	root pulling force (QTL)-2-1			2	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 2 flanked DNA markers ME13-3 and RG158.	 Vegetative organ - Root								
2425	qRPF-3-1(rpf3.1)	qRPF-3-1(rpf3.1)	root pulling force (QTL)-3-1	root pulling force (QTL)-3-1			3	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 3 flanked by DNA markers EM11-9 and CDO20.	 Vegetative organ - Root								
2426	qRPF-3-2(rpf3.2)	qRPF-3-2(rpf3.2)	root pulling force (QTL)-3-2	root pulling force (QTL)-3-2			3	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 3 flanked by DNA markers EM13-1 and R2170.	 Vegetative organ - Root								
2427	qRPF-4-1(rpf4.1)	qRPF-4-1(rpf4.1)	root pulling force (QTL)-4-1	root pulling force (QTL)-4-1			4	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers RG214 and RG620.	 Vegetative organ - Root								
2428	qRPF-5-1(rpf5.1)	qRPF-5-1(rpf5.1)	root pulling force (QTL)-5-1	root pulling force (QTL)-5-1			5	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 5 flanked by RM164 and EM15-5.	 Vegetative organ - Root								
2429	qRPF-11-1(rpf11.1)	qRPF-11-1(rpf11.1)	root pulling force (QTL) -11-1	root pulling force (QTL) -11-1			11	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 11 flanked by DNA markers ME2-6 and RM21.	 Vegetative organ - Root								
2430	qTRDW-1-1(trdw1.1)	qTRDW-1-1(trdw1.1)	total root dry weight (QTL)-1-1	total root dry weight (QTL)-1-1			1	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 1 flanked by DNA markers RG109 and EM11-11.	 Vegetative organ - Root								
2431	qTRDW-2-1(trdw2.1)	qTRDW-2-1(trdw2.1)	total root dry weight (QTL)-2-1	total root dry weight (QTL)-2-1			2	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 2 flanked by DNA markers ME2-7 and EMP2-7.	 Vegetative organ - Root								
2432	qTRDW-4-1(trdw4.1)	qTRDW-4-1(trdw4.1)	total root dry weight (QTL)-4-1	total root dry weight (QTL)-4-1			4	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers RG190 and EM15-3.	 Vegetative organ - Root								
2433	qTRDW-6-1(trdw6.1)	qTRDW-6-1(trdw6.1)	total root dry weight (QTL)-6-1	total root dry weight (QTL)-6-1			6	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 6 flanked by DNA markers ME4-11 and ME7-5.	 Vegetative organ - Root								
2434	qTRDW-10-1(trdw10.1)	qTRDW-10-1(trdw10.1)	total root dry weight (QTL)-10-1	total root dry weight (QTL)-10-1			10	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 10 flanked by DNA markers RG257 and ME5-16.	 Vegetative organ - Root								
2435	qPRDW-4-1(prdw4.1)	qPRDW-4-1(prdw4.1)	penetrated root dry weight (QTL)-4-1	penetrated root dry weight (QTL)-4-1			4	This QTL controls penetrated root dry weight in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers RG939 and RG476.	 Vegetative organ - Root								
2436	qPRDW-9-1(prdw9.1)	qPRDW-9-1(prdw9.1)	penetrated root dry weight (QTL)-9-1	penetrated root dry weight (QTL)-9-1			9	This QTL controls penetrated root dry weight in relation to drought tolerance, being located on chromosome 9 flanked by DNA markers R41 and ME2-10.	 Vegetative organ - Root								
2438	qPRDW-12-1(prdw12.1)	qPRDW-12-1(prdw12.1)	penetrated root dry weight (QTL)-12-1	penetrated root dry weight (QTL)-12-1			12	This QTL controls penetrated root dry weight in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers RG9 and ME10-1.	 Vegetative organ - Root								
2439	qPRL-11-1(prl11.1)	qPRL-11-1(prl11.1)	penetrated root length (QTL)-11-1	penetrated root length (QTL)-11-1			11	This QTL controls penetrated root length in relation to drought tolerance, being located on chromosome 11 flanke by DNA markers G1465 and C950.	 Vegetative organ - Root								
2440	qPH-1-1(t) (ph1)	qPH-1-1(t) (ph1)	plant height (QTL)-1-1(t)	plant height (QTL)-1-1(t)			1	This QTL controls plant height, being located on chromosome 1 flanked by DNA markers RG236 and C547.	 Vegetative organ - Culm								
2441	qPH-3-2(t) (ph3)	qPH-3-2(t) (ph3)	plant height (QTL)-3-2(t)	plant height (QTL)-3-2(t)			3	This QTL controls plant height, being located on chromosome 3 flanked by DNA markers R1966 and G144.	 Vegetative organ - Culm								
2442	qPH-5-1(t) (ph5a)	qPH-5-1(t) (ph5a)	plant height (QTL)-5-1(t)	plant height (QTL)-5-1(t)			5	This QTL controls plant height, being located on chromosome 5 flanked by DNA markers RM163 and C624.	 Vegetative organ - Culm								
2443	qPH-5-2(t) (ph5b)	qPH-5-2(t) (ph5b)	plant height (QTL)-5-2(t)	plant height (QTL)-5-2(t)			5	This QTL controls plant height, being located on chromosome 5 flanked by DNA markers RZ649 and RM163.	 Vegetative organ - Culm								
2444	qPH-7-1(t) (ph7)	qPH-7-1(t) (ph7)	plant height (QTL)-7-1(t)	plant height (QTL)-7-1(t)			7	This QTL controls plant height, being located on chromosome 7 flanked by DNA markers RG128 and C1023 or C1023 and R1440.	 Vegetative organ - Culm								
2445	qHD-3-2	qHD-3-2, qHD-3-2(t)(hd3)	heading date (QTL)-3-2	heading date (QTL)-3-2			3	This QTL controls heading date, being located on chromosome 3 flanked by DNA markers G144 and RG393.	 Reproductive organ - Heading date								
2446	qHD-6	qHD-6, qHD-6(t)(hd6)	heading date (QTL)-6	heading date (QTL)-6			6	This QTL controls heading date, being located on chromosome 6 flanked by DNA markers R1952 and C226.	 Reproductive organ - Heading date								
2447	qHD-7-1(t)(hd7a)	qHD-7-1(t)(hd7a)	heading date (QTL)-7-1(t)	heading date (QTL)-7-1(t)			7	This QTL controls heading date, being located on chromosome 7 flanked by DNA markers RM18 and R1789.	 Reproductive organ - Heading date								
2448	qHD-7-2(t)(hd7b)	qHD-7-2(t)(hd7b)	heading date (QTL)-7-2(t)	heading date (QTL)-7-2(t)			7	This QTL controls heading date, being located on chromosome 7 flanked by DNA markers MX2 and RM18.	 Reproductive organ - Heading date								
2449	qHD-7-3(t)(hd7c)	qHD-7-3(t)(hd7c)	heading date (QTL)-7-3(t)	heading date (QTL)-7-3(t)			7	This QTL controls heading date, being located on chromosome 7 flanked by DNA markers C1023 and R1440.	 Reproductive organ - Heading date								
2450	qHD-11-1(t)(hd11)	qHD-11-1(t)(hd11)	heading date (QTL)-11-1(t)	heading date (QTL)-11-1(t)			11	This QTL controls heading date, being located on chromosome 11 flanked by DNA markers C950 and G389b.	 Reproductive organ - Heading date								
2451	RTMS1	rtms1, rtms1*	REVERSE THERMO-SENSITIVE GENIC MALE-STERILE 1	reverse thermo-sensitive genic male-sterile1, reverse thermosensitive male sterility 1			10	Completely sterile when the temperature is lower than 31C. This gene is located on chromosome 10 closely linked with marker Rev1 and flanked by RM239 and RG257. PO:0009066; anther ; PO:0009046; flower. AF255611 (Rev1).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061102			GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus	TO:0000067 - genic male sterility-thermo sensitive	PO:0009046 - flower , PO:0009066 - anther 
2452	qCTB-4-1(t) (Ctb-1, Ctb1)	qCTB-4-1(t) (Ctb-1, Ctb1)	cold tolerance (QTL)-4-1	cold tolerance (QTL)-4-1			4	This QTL controls cold tolerance and affects anther length (large anther), being located on the long arm of chromosome 4 flanked by R2737 and XNpb102.	 Tolerance and resistance - Stress tolerance								
2453	qCTB-4-2(t) (Ctb-2)	qCTB-4-2(t) (Ctb-2)	cold tolerance (QTL)-4-2	cold tolerance (QTL)-4-2			4	This QTL controls cold tolerance and affects anthr length (large anther), being located on the long arm of chromosome 4 flanked by SCAB11 and R740.	 Tolerance and resistance - Stress tolerance								
2454	GEL	gel(t), gel	GELATINISATION	gelatinisation (t), gelatinisation, gelatinization-behavior			6	This gene causes gelatinisation of endosperm starch granules in a 4 M urea solution. This gene is located on chromosome 6 flanked by RFLP markers R2147 and C1478 and to the same location with alk, acl(t), and SSIIa. This trait is used for identification. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0061086			GO:0016051 - carbohydrate biosynthetic process	TO:0000462 - gelatinization temperature	PO:0009010 - seed 
2455	ACL	acl (t), acl(t), acl	AMYLOPECTIN CHAIN-LENGTH	amylopectin chain-length (t), amylopectin chain-length, amylopectin chain length			6	This gene controls amylopectin chain-length distribution in endosperm starch-grains. This trait is used for identification of japonica-type and indica-type starch grains of their endosperm. Most probably acl(t), alk, gel(t) and SSIIa are the same gene as ... PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0061070			GO:0019252 - starch biosynthetic process	TO:0000488 - seed composition based quality trait	PO:0009010 - seed 
2457	qBPHR-1 (QBphr1)	qBPHR-1 (QBphr1)	brown planthopper resistance (QTL)-1	brown planthopper resistance (QTL)-1			1	This QTL controls brown planthopper resistance, being located on chromosome 1 flanked by RFLP markers R210 and RZ382.	 Tolerance and resistance - Insect resistance								
2458	qBPHR-3 (QBphr3)	qBPHR-3 (QBphr3)	brown planthopper resistance (QTL)-3	brown planthopper resistance (QTL)-3			3	This QTL controls brown planthopper resistance, being located on chromosome 3 flanked by RFLP markers G249 and RG418b.	 Tolerance and resistance - Insect resistance								
2459	qBPHR-5-1 (QBphr5a)	qBPHR-5-1 (QBphr5a)	brown planthopper resistance (QTL)-5-1	brown planthopper resistance (QTL)-5-1			5	This QTL controls brown planthopper resistance, being located on chromosome 5 flanked by major gene gl1 (leaf and stem pubescence) and RFLP marker Y1049.	 Tolerance and resistance - Insect resistance								
2460	qBPHR-5-2 (QBphr5b)	qBPHR-5-2 (QBphr5b)	brown planthopper resistance (QTL)-5-2	brown planthopper resistance (QTL)-5-2			5	This QTL controls brown planthopper resistance, being located on chromosome 5 flanked by RFLP markers Y1049 and R569a.	 Tolerance and resistance - Insect resistance								
2461	qBPHR-8 (QBphr8)	qBPHR-8 (QBphr8)	brown planthopper resistance (QTL)-8	brown planthopper resistance (QTL)-8			8	This QTL controls brown planthopper resistance, being located on chromosome 8 flanked by RFLP markers C1073a and G187.	 Tolerance and resistance - Insect resistance								
2462	qBPHR-11-1 (QBphr11a)	qBPHR-11-1 (QBphr11a)	brown planthopper resistance (QTL)-11-1	brown planthopper resistance (QTL)-11-1			11	This QTL controls brown planthopper resistance, being located on chromosome 11 flanked by RFLP markers RZ53 and RZ781.	 Tolerance and resistance - Insect resistance								
2463	qBPHR-11-2 (QBphr11b)	qBPHR-11-2 (QBphr11b)	brown planthopper resistance (QTL)-11-2	brown planthopper resistance (QTL)-11-2			11	This QTL controls brown planthopper resistance, being located on chromosome 11 flanked by RFLP markers RG1022 and RZ525a.	 Tolerance and resistance - Insect resistance								
2464	SGR	sgr(t), sgr, OsSGR, OsSgr	STAY GREEN LEAF	stay green leaf (t), stay green, staying green during senescence, Stay-Green	CHL-DEGRADING PATHWAY REGULATOR		9	LOC_Os09g36200 . Leaves of the mutant remain green while senescence. The gene is located on the long arm of chromosome 9 flanked by RFLP markers RG662 and C985. AAW82954. PO:0009025; leaf. GRO:0007140; B-reproductive stage.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os09g0532000	LOC_Os09g36200.1	GR:0061191			GO:0010150 - leaf senescence, GO:0009413 - response to flooding, GO:0015996 - chlorophyll catabolic process, GO:0009536 - plastid, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0009646 - response to absence of light	TO:0002712 - stay green trait, TO:0000524 - submergence tolerance, TO:0000326 - leaf color, TO:0000298 - chlorophyll ratio, TO:0000249 - leaf senescence, TO:0000075 - light sensitivity	PO:0009025 - vascular leaf , PO:0001054 - 4 leaf senescence stage 
2465	qSD-1	qSD-1	seed dormancy (QTL)-1	seed dormancy (QTL)-1			1	This QTL controls seed dormancy, being located on chromosome 1 in the vicinity of RFLP marker R1613.	 Seed - Physiological traits - Dormancy								
2466	qSD-3	qSD-3	seed dormancy (QTL)-3	seed dormancy (QTL)-3			3	This QTL controls seed dormancy, being located on chromosome 3 in the vicinity of RFLP marker C25.	 Seed - Physiological traits - Dormancy								
2467	qSD-5	qSD-5	seed dormancy (QTL)-5	seed dormancy (QTL)-5			5	This QTL controls seed dormancy, being located on chromosome 5 in the vicinity of RFLP marker R1838.	 Seed - Physiological traits - Dormancy								
2468	qSD-7-1	qSD-7-1	seed dormancy (QTL)-7-1	seed dormancy (QTL)-7-1			7	This QTL controls seed dormancy, being located on chromosome 7 in the vicinity of RFLP marker R1357.	 Seed - Physiological traits - Dormancy								
2469	qSD-11	qSD-11	seed dormancy (QTL)-11	seed dormancy (QTL)-11			11	This QTL controls seed dormancy, being located on chromosome 11 in the vicinity of RFLP marker C189.	 Seed - Physiological traits - Dormancy								
2470	qLG-2	qLG-2	seed longevity (QTL)-2	seed longevity (QTL)-2			2	This QTL controls seed longevity, being located on chromosome 2 in the vicinity of RFLP marker C1470.	 Seed - Physiological traits - Longevity								
2471	qLG-4	qLG-4	seed longevity (QTL)-4	seed longevity (QTL)-4			4	This QTL controls seed longevity, being located on chromosome 4 in the vicinity of RFLP marker R514.	 Seed - Physiological traits - Longevity								
2472	qLG-9	qLG-9	seed longevity (QTL)-9	seed longevity (QTL)-9			9	This QTL controls seed longevity, being located on chromosome 9 in the vicinity of RFLP marker R79.	 Seed - Physiological traits - Longevity								
2473	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6	BENTAZON LETHAL	bentazon sensitive, BENTAZON SENSITIVITY, bentazon susceptible lethality, BENTAZON AND SULFONYLUREA RESISTANT PROTEIN, cytochrome P450 81A6	CYTOCHROME P450 MONOOXYGENASE	cyp81a6	3	Hervicide bentazon and sulfonylurea kill this mutant. This recessive gene is located on chromosome 3 in the vicinity of marker RM168. DQ341412. AU070733. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os03g0760200	LOC_Os03g55240.1				GO:0009566 - fertilization, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009635 - response to herbicide	TO:0000432 - temperature response trait, TO:0000058 - herbicide sensitivity	
2474	GAPDH(T)	OsGAPDH(t)	SUBMERGENCE TOLERANCE	submergence tolerance			8	This mutant is tolerant to submergence. It is located on chromosome 8.	 Tolerance and resistance - Stress tolerance						GO:0009413 - response to flooding		
2475	qGR-3-1 (qGR3-1)	qGR-3-1 (qGR3-1)	Germination rate (QTL)-3-1	Germination rate (QTL)-3-1			3	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C944 and R321.	 Character as QTL - Germination								
2476	qGR-3-2 (qGR3-2)	qGR-3-2 (qGR3-2)	germination rate (QTL)-3-2	germination rate (QTL)-3-2			3	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers RG393 and C1087.	 Character as QTL - Germination								
2477	qGR-3-3 (qGR3-3)	qGR-3-3 (qGR3-3)	germination rate (QTL)-3-3	germination rate (QTL)-3-3			3	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C63 and RM232.	 Character as QTL - Germination								
2478	qGR-5-1 (qGR5-1)	qGR-5-1 (qGR5-1)	germination rate (QTL)-5-1	germination rate (QTL)-5-1			5	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers C246 and RM26.	 Character as QTL - Germination								
2479	qGR-5-2 (qGR5-2)	qGR-5-2 (qGR5-2)	germination rate (QTL)-5-2	germination rate (QTL)-5-2			5	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers RG360 and C734b.	 Character as QTL - Germination								
2480	qGR-6-1 (qGR6-1)	qGR-6-1 (qGR6-1)	germination rate (QTL)-6-1	germination rate (QTL)-6-1			6	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers RZ667 and RG424.	 Character as QTL - Germination								
2481	qGR-6-2 (qGR6-2)	qGR-6-2 (qGR6-2)	germination rate (QTL)-6-2	germination rate (QTL)-6-2			6	This QTL controls germination rate in relation to seedling vogor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Germination								
2482	qGR-7-1 (qGR7-1)	qGR-7-1 (qGR7-1)	germination rate (QTL)-7-1	germination rate (QTL)-7-1			7	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 7 flanked by molecular markers RG128 and C1023.	 Character as QTL - Germination								
2483	qTDW-1-1 (qTDW1-1)	qTDW-1-1 (qTDW1-1)	total seedling dry weight (QTL)-1-1	total seedling dry weight (QTL)-1-1			1	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers RG236 and C112.	 Character as QTL - Plant growth activity								
2484	qTDW-1-2 (qTDW1-2)	qTDW-1-2 (qTDW1-2)	total seedling dry weight (QTL)-1-2	total seedling dry weight (QTL)-1-2			1	This QTL controls total seedling dry weight in relaton to seedling vigor, being located on chromosome 1 flanked by molecular markers G359 and RG532.	 Character as QTL - Plant growth activity								
2485	qTDW-3-1 (qTDW3-1)	qTDW-3-1 (qTDW3-1)	total seedling dry weight (QTL)-3-1	total seedling dry weight (QTL)-3-1			3	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers RG393 and C1087.	 Character as QTL - Plant growth activity								
2486	qTDW-5-1 (qTDW5-1)	qTDW-5-1 (qTDW5-1)	total seedling dry weight (QTL)-5-1	total seedling dry weight (QTL)-5-1			5	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers RM26 and C1447.	 Character as QTL - Plant growth activity								
2487	qTDW-5-2 (qTDW5-2)	qTDW-5-2 (qTDW5-2)	total seedling dry weight (QTL)-5-2	total seedling dry weight (QTL)-5-2			5	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R3166 and RG360.	 Character as QTL - Plant growth activity								
2488	qTDW-6-1 (qTDW6-1)	qTDW-6-1 (qTDW6-1)	total seedling dry weight (QTL)-6-1	total seedling dry weight (QTL)-6-1			5	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers R2549 and C962.	 Character as QTL - Plant growth activity								
2489	qTDW-6-2 (qTDW6-2)	qTDW-6-2 (qTDW6-2)	total seedling dry weight (QTL)-6-2	total seedling dry weight (QTL)-6-2			5	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Plant growth activity								
2490	qTDW-9-1 (qTDW9-1)	qTDW-9-1 (qTDW9-1)	total seedling dry weight (QTL)-9-1	total seedling dry weight (QTL)-9-1			9	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 9 flanked by molecular markers C734 and R1164.	 Character as QTL - Plant growth activity								
2491	qSDW-1-1 (qSDW1-1)	qSDW-1-1 (qSDW1-1)	shoot dry weight (QTL)-1-1	shoot dry weight (QTL)-1-1			1	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers RG236 and C112.	 Character as QTL - Plant growth activity								
2492	qSDW-3-1 (qSDW3-1)	qSDW-3-1 (qSDW3-1)	shoot dry weight (QTL)-3-1	shoot dry weight (QTL)-3-1			3	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers RG393 and C1087.	 Character as QTL - Plant growth activity								
2493	qSDW-5-1 (qSDW5-1)	qSDW-5-1 (qSDW5-1)	shoot dry weight (QTL)-5-1	shoot dry weight (QTL)-5-1			5	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers RM26 and C1447.	 Character as QTL - Plant growth activity								
2494	qSDW-5-2 (qSDW5-2)	qSDW-5-2 (qSDW5-2)	shoot dry weight (QTL)-5-2	shoot dry weight (QTL)-5-2			5	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R360 and C734b.	 Character as QTL - Plant growth activity								
2495	qSDW-6-1 (qSDW6-1)	qSDW-6-1 (qSDW6-1)	shoot dry weight (QTL)-6-1	shoot dry weight (QTL)-6-1			6	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers R2549 and C962.	 Character as QTL - Plant growth activity								
2496	qSDW-6-2(qSDW6-2)	qSDW-6-2(qSDW6-2)	shoot dry weight (QTL)-6-2	shoot dry weight (QTL)-6-2			6	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Plant growth activity								
2497	qSDW-9-1 (qSDW9-1)	qSDW-9-1 (qSDW9-1)	shoot dry weight (QTL)-9-1	shoot dry weight (QTL)-9-1			9	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 9 flanked by molecular markers C734 and R1164.	 Character as QTL - Plant growth activity								
2498	qRDW-1-1 (qRDW1-1)	qRDW-1-1 (qRDW1-1)	root dry weight (QTL)-1-1	root dry weight (QTL)-1-1			1	This QTL controls root dry weight of seedling in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers G359 and RG532.	 Character as QTL - Root activity								
2499	qRDW-5-1 (qRDW5-1)	qRDW-5-1 (qRDW5-1)	root dry weight (QTL)-5-1	root dry weight (QTL)-5-1			5	This QTL controls root dry weight of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers C246 and RM26.	 Character as QTL - Root activity								
2500	qRDW-5-2 (qRDW5-2)	qRDW-5-2 (qRDW5-2)	root dry weight (QTL)-5-2	root dry weight (QTL)-5-2			5	This QTL controls root dry weight of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R3166 and RG360.	 Character as QTL - Root activity								
2501	qRDW-10-1 (qRDW10-1)	qRDW-10-1 (qRDW10-1)	root dry weight (QTL)-10-1	root dry weight (QTL)-10-1			10	This QTL controls root dry weight of seedling in relation to seedling vigor, being located on chromosome 10 flanked by molecular markers C677 and RM258.	 Character as QTL - Root activity								
2502	qMRL-1-1 (qMRL1-1)	qMRL-1-1 (qMRL1-1)	maximum root length (QTL)-1-1	maximum root length (QTL)-1-1			1	This QTL controls maximum root length of seedling in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers C2340 and C86.	 Character as QTL - Root activity								
2503	qMRL-1-2 (qMRL1-2)	qMRL-1-2 (qMRL1-2)	maximum root length (QTL)-1-2	maximum root length (QTL)-1-2			1	This QTL controls maximum root length of seedling in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers G359 and RG532.	 Character as QTL - Root activity								
2504	qMRL-5-1 (qMRL5-1)	qMRL-5-1 (qMRL5-1)	maximum root length (QTL)-5-1	maximum root length (QTL)-5-1			5	This QTL controls maximum root length of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers RM26 and C1447.	 Character as QTL - Root activity								
2505	qMRL-6-1 (qMRL6-1)	qMRL-6-1 (qMRL6-1)	maximum root length (QTL)-6-1	maximum root length (QTL)-6-1			6	This QTL controls maximum root length of seedling in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers C952 and Waxy.	 Character as QTL - Root activity								
2506	qTAA-3-1 (qTAA3-1)	qTAA-3-1 (qTAA3-1)	total amylase activity (QTL)-3-1	total amylase activity (QTL)-3-1			3	This QTL controls total amylase activity in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C316 and C63.	 Character as QTL - Grain quality								
2507	qTAA-5-1 (qTAA5-1)	qTAA-5-1 (qTAA5-1)	total amylase activity (QTL)-5-1	total amylase activity (QTL)-5-1			5	This QTL controls total amylase activity in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R830 and R3166.	 Character as QTL - Grain quality								
2508	qTAA-6-1 (qTAA6-1)	qTAA-6-1 (qTAA6-1)	total amylase activity (QTL)-6-1	total amylase activity (QTL)-6-1			6	This QTL controls total amylase activity in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Grain quality								
2509	qAAA-6-1(qAAA6-1)	qAAA-6-1 (qAAA6-1)	alpha-amylase activity (QTL)-6-1	alpha-amylase activity (QTL)-6-1			6	This QTL controls alpha-amylase activity in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers RG653 and G342.	 Character as QTL - Grain quality								
2510	qAAA-6-2 (qAAA6-2)	qAAA-6-2 (qAAA6-2)	alpha-amylase activity (QTL)-6-2	alpha-amylase activity (QTL)-6-2			6	This QTL controls alpha-amylase activity in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Grain quality								
2511	qRS-3-1 (qRS3-1)	qRS-3-1 (qRS3-1)	reducing sugar content (QTL)-3-1	reducing sugar content (QTL)-3-1			3	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers RG393 and C1087.	 Character as QTL - Plant growth activity								
2512	qRS-5-1 (qRS5-1)	qRS-5-1 (qRS5-1)	reducing sugar content (QTL)-5-1	reducing sugar content (QTL)-5-1			5	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R3166 and RG360.	 Character as QTL - Plant growth activity								
2513	qRS-6-1 (qRS6-1)	qRS-6-1 (qRS6-1)	reducing sugar content (QTL)-6-1	reducing sugar content (QTL)-6-1			6	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers RZ667 and RG424.	 Character as QTL - Plant growth activity								
2514	qRS-6-2 (qRS6-2)	qRS-6-2 (qRS6-2)	reducing sugar content (QTL)-6-2	reducing sugar content (QTL)-6-2			6	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Plant growth activity								
2515	qRS-10-1 (qRS10-1)	qRS-10-1 (qRS10-1)	reducing sugar content (QTL)-10-1	reducing sugar content (QTL)-10-1			10	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 10 flanked by molecular markers C1633 and C667.	 Character as QTL - Plant growth activity								
2516	qRS-11-1 (qRS11-1)	qRS-11-1 (qRS11-1)	reducing sugar content (QTL)-11-1	reducing sugar content (QTL)-11-1			11	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 11 flanked by molecular markers RM254 and Clone4.	 Character as QTL - Plant growth activity								
2517	qRA-5-1 (qRA5-1)	qRA-5-1 (qRA5-1)	root activity (QTL)-5-1	root activity (QTL)-5-1			5	This QTL controls root activity in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers C246 and RM26.	 Character as QTL - Root activity								
2518	qRA-5-2 (qRA5-2)	qRA-5-2 (qRA5-2)	root activity (QTL)-5-2	root activity (QTL)-5-2			5	This QTL controls root activity in relaton to seedling vigor, being located on chromosome 5 flanked by molecular markers R830 and R3166.	 Character as QTL - Root activity								
2519	qRA-9-1 (qRA9-1)	qRA-9-1 (qRA9-1)	root activity (QTL)-9-1	root activity (QTL)-9-1			9	This QTL controls root activity in relation to seedling vigor, being located on chromosome 9 flanked by molecular markers RM257 and RM242.	 Character as QTL - Root activity								
2520	qSW-1-1 (qSW1-1)	qSW-1-1 (qSW1-1)	seed weight (QTL)-1-1	seed weight (QTL)-1-1			1	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers RG236 and C112.	 Character as QTL - Grain quality								
2521	qSW-1-2 (qSW1-2)	qSW-1-2 (qSW1-2)	seed weight (QTL)-1-2	seed weight (QTL)-1-2			1	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers C2340 and C86.	 Character as QTL - Grain quality								
2522	qSW-1-3 (qSW1-3)	qSW-1-3 (qSW1-3)	seed weight (QTL)-1-3	seed weight (QTL)-1-3			1	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers G359 and RG532.	 Character as QTL - Grain quality								
2523	qSW-3-1 (qSW3-1)	qSW-3-1 (qSW3-1)	seed weight (QTL)-3-1	seed weight (QTL)-3-1			3	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C746 and C944.	 Character as QTL - Grain quality								
2524	qSW-3-2 (qSW3-2)	qSW-3-2 (qSW3-2)	seed weight (QTL)-3-2	seed weight (QTL)-3-2			3	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C1087 and RZ403.	 Character as QTL - Grain quality								
2525	qSW-5-1 (qSW5-1)	qSW-5-1 (qSW5-1)	seed weight (QTL)-5-1	seed weight (QTL)-5-1			5	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R3166 and RG360.	 Character as QTL - Grain quality								
2526	qSW-8-1 (qSW8-1)	qSW-8-1 (qSW8-1)	seed weight (QTL)-8-1	seed weight (QTL)-8-1			8	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 8 flanked by molecular markers R1394 and G2132.	 Character as QTL - Grain quality								
2527	qSW-9-1 (qSW9-1)	qSW-9-1 (qSW9-1)	seed weight (QTL)-9-1	seed weight (QTL)-9-1			9	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 9 flanked by molecular markers RM257 and RM242.	 Character as QTL - Grain quality								
2528	qSW-11-1 (qSW11-1)	qSW-11-1 (qSW11-1)	seed weight (QTL)-11-1	seed weight (QTL)-11-1			11	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 11 flanked by molecular markers G44 and G257.	 Character as QTL - Grain quality								
2529	HWE2	hwe2	HYBRID WEAKNESS E2	hybrid weakness e2			1	This gene causes hybrid weakness complementarily with hwe1 gene. The hwe2 gene is located on chromosome 1 flanked by RFLP markers R3192 and C1211.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development		
2530	qGYD-1-1	qGYD-1-1	grain yield per plant (QTL)-1-1	grain yield per plant (QTL)-1-1			1	This QTL controls grain yield per plant, being located on chromosome 1 flanked by DNA markers RG532 and RM81A.	 Character as QTL - Yield and productivity								
2531	qGYD-1-2	qGYD-1-2	grain yield per plant (QTL)-1-2	grain yield per plant (QTL)-1-2			1	This QTL controls grain yield per plant, being located on chromosome 1 flanked by DNA markers RZ538 and RG381.	 Character as QTL - Yield and productivity								
2532	qGYD-6-1	qGYD-6-1	grain yield per plant (QTL)-6-1	grain yield per plant (QTL)-6-1			6	This QTL controls grain yield per plant, being located on chromosome 6 flanked by RZ398 and RM204.	 Character as QTL - Yield and productivity								
2533	qGYD-7-1	qGYD-7-1	grain yield per plant (QTL)-7-1	grain yield per plant (QTL)-7-1			7	This QTL controls grain yield per plant, being located on chromosome 7 flanked by RZ471 and RZ753.	 Character as QTL - Yield and productivity								
2534	qGYD-7-2	qGYD-7-2	grain yield per plant (QTL)-7-2	grain yield per plant (QTL)-7-2			7	This QTL controls grain yield per plant, being located on chromosome 7 flanked by DNA markers RZ753 and RZ264.	 Character as QTL - Yield and productivity								
2535	qGYD-10	qGYD-10	grain yield per plant (QTL)-10	grain yield per plant (QTL)-10			10	This QTL controls grain yield per plant, being located on chromosome 10 flanked by DNA markers RM228 and RM18A.	 Character as QTL - Yield and productivity								
2536	qNP-6-1 (NP-6)	qNP-6-1 (NP-6)	number of panicles per plant (QTL)-6-1	number of panicles per plant (QTL)-6-1			6	This QTL controls number of panicles per plant, being located on chromosome 6 flanked by DNA markers RZ450 and RZ588.	 Character as QTL - Yield and productivity								
2537	qNFGP-1-1	qNFGP-1-1	number of filled grains per panicle (QTL)-1-1	number of filled grains per panicle (QTL)-1-1			1	This QTL controls number of filled grains per panicle, being located on chromosome 1 flanked by DNA markers RM1 and RG532.	 Character as QTL - Yield and productivity								
2538	qNFGP-1-2	qNFGP-1-2	number of filled grains per panicle (QTL)-1-2	number of filled grains per panicle (QTL)-1-2			1	This QTL controls number of filled grains per panicle, being located on chromosome 1 flanke by DNA markers RZ538 and RG381.	 Character as QTL - Yield and productivity								
2539	qNFGP-3-1	qNFGP-3-1	number of filled grains per panicle (QTL)-3-1	number of filled grains per panicle (QTL)-3-1			3	This QTL controls number of filled grains per panicle, being located on chromosome 3 flanked by DNA markers RZ696 and RZ22.	 Character as QTL - Yield and productivity								
2540	qNFGP-5-1	qNFGP-5-1	number of filled grains per panicle (QTL)-5-1	number of filled grains per panicle (QTL)-5-1			5	This QTL controls number of filled grains per panicle, being located on chromosome 5 flanked by DNA markers RG13 and RM164.	 Character as QTL - Yield and productivity								
2541	qNFGP-5-2	qNFGP-5-2	number of filled grains per panicle (QTL)-5-2	number of filled grains per panicle (QTL)-5-2			5	This QTL controls number of filled grains per panicle, being located on chromosome 5 flanked by DNA markers RG470 and RZ70.	 Character as QTL - Yield and productivity								
2542	qNFGP-6	qNFGP-6	number of filled grains per panicle (QTL)-6	number of filled grains per panicle (QTL)-6			6	This QTL controls number of filled grains per panicle, being located on chromosome 6 flanked by DNA markers RZ516 and RM217.	 Character as QTL - Yield and productivity								
2543	qNFGP-7-1	qNFGP-7-1	number of filled grains per panicle (QTL)-7-1	number of filled grains per panicle (QTL)-7-1			7	This QTL controls number of filled grains per panicle, being located on chromosome 7 flanked by DNA markers RZ471 and RZ753.	 Character as QTL - Yield and productivity								
2544	qNFGP-7-2	qNFGP-7-2	number of filled grains per panicle (QTL)-7-2	number of filled grains per panicle (QTL)-7-2			7	This QTL controls number of filled grains per panicle, being located on chromosome 7 flanked by DNA markers RZ264 and RZ626.	 Character as QTL - Yield and productivity								
2545	qTNSP-1-1	qTNSP-1-1	total number of spikelets per panicle (QTL)-1-1	total number of spikelets per panicle (QTL)-1-1			1	This QTL controls total number of spikelets per panicle, being located on chromosome 1 flanked by DNA markers RM1 and RG532.	 Character as QTL - Yield and productivity								
2546	qTNSP-2-2	qTNSP-2-2	total number of spikelets per panicle (QTL)-2-2	total number of spikelets per panicle (QTL)-2-2			2	This QTL controls total number of spikelets per panicle, being located on chromosome 2 flanked by DNA markers RM263 and RM240.	 Character as QTL - Yield and productivity								
2547	qTNSP-5	qTNSP-5	total number of spikelets per panicle (QTL)-5	total number of spikelets per panicle (QTL)-5			5	This QTL controls total number of spikelets per panicle, being located on chromosome 5 flanked by DNA markers RG13 and RM164.	 Character as QTL - Yield and productivity								
2548	qTNSP-6	qTNSP-6	total number of spikelets per panicle (QTL)-6	total number of spikelets per panicle (QTL)-6			6	This QTL controls total number of spikelets per panicle, being located on chromosome 6 flanked by DNA markers RG138 and RM253.	 Character as QTL - Yield and productivity								
2549	qTNSP-7	qTNSP-7	total number of spikelets per panicle (QTL)-7	total number of spikelets per panicle (QTL)-7			7	This QTL controls total number of spikelets per panicle, being located on chromosome 7 flanked by DNA markers RZ471 and RZ753.	 Character as QTL - Yield and productivity								
2550	qTNSP-9	qTNSP-9	total number of spikelets per panicle (QTL)-9	total number of spikelets per panicle (QTL)-9			9	This QTL controls total number of spikelets per panicle, being located on chromosome 9 flanked by DNA markers RM201 and RG662.	 Character as QTL - Yield and productivity								
2551	qSF-1(t)	qSF-1(t)	spikelet fertility (QTL)-1(t)	spikelet fertility (QTL)-1(t)			1	This QTL controls spikelet fertility, being located on chrosmosome 1 flanked by DNA markers RZ730 and RZ538.	 Character as QTL - Seed sterility								
2552	qSF-10-1(t)	qSF-10-1(t)	spikelet fertility (QTL)-10-1(t)	spikelet fertility (QTL)-10-1(t)			10	This QTL controls spikelet fertility, being located on chromosome 10 flanked by DNA markers RM258 and RZ811.	 Character as QTL - Seed sterility								
2553	qTGWT-1-1	qTGWT-1-1	1000-grain weight (QTL)-1-1	1000-grain weight (QTL)-1-1			1	This QTL controls 1000-grain weight, being located on chromosome 1 flanked by DNA markers RG532 and RM81A.	 Character as QTL - Yield and productivity								
2554	qTGWT-2-2(t)	qTGWT-2-2(t)	1000-grain weight (QTL)-2-2(t)	1000-grain weight (QTL)-2-2(t)			2	This QTL controls 1000-grain weight, being located on chromosome 2 flanked by DNA markers RM240 and RZ123.	 Character as QTL - Yield and productivity								
2555	qTGWT-3-1(t)	qTGWT-3-1(t)	1000-grain weight (QTL)-3-1(t)	1000-grain weight (QTL)-3-1(t)			3	This QTL controls 1000-grain weight, being located on chromosome 3 flanked by DNA markers RM232 and RM218.	 Character as QTL - Yield and productivity								
2556	qTGWT-3-2(t)	qTGWT-3-2(t)	1000-grain weight (QTL)-3-2(t)	1000-grain weight (QTL)-3-2(t)			3	This QTL controls 1000-grain weight, being located on chromosome 3 flanked by DNA markers RM168 and RZ448.	 Character as QTL - Yield and productivity								
2557	qTGWT-4-1(t) (qTGWT-4)	qTGWT-4-1(t) (qTGWT-4)	1000-grain weight (QTL)-4-1(t)	1000-grain weight (QTL)-4-1(t)			4	This QTL controls 1000-grain weight, being located on chromosome 4 flanked by DNA markers RZ86 and RG454.	 Character as QTL - Yield and productivity								
2558	qTGWT-5-1(t) (qTGWT-5)	qTGWT-5-1(t) (qTGWT-5)	1000-grain weight (QTL)-5-1(t)	1000-grain weight (QTL)-5-1(t)			5	This QTL controls 1000-grain weight, being located on chromosome 5 flanked by DNA markers RG573 and RG470.	 Character as QTL - Yield and productivity								
2559	qTGWT-6-1(t) (qTGWT-6)	qTGWT-6-1(t) (qTGWT-6)	1000-grain weight (QTL)-6-1(t)	1000-grain weight (QTL)-6-1(t)			6	This QTL controls 1000-grain weight, being located on chromosome 6 flanked by DNA markers RZ667 and B10.	 Character as QTL - Yield and productivity								
2560	qTGWT-10-1(t) (qTGWT-10)	qTGWT-10-1(t) (qTGWT-10)	1000-grain weight (QTL)-10-1(t)	1000-grain weight (QTL)-10-1(t)			10	This QTL controls 1000-grain weight, being located on chromosome 10 flanked by DNA markers RG561 and RM228.	 Character as QTL - Yield and productivity								
2561	qGYD-2 (GYD-2)	qGYD-2 (GYD-2)	grain yield per plant (QTL)-2	grain yield per plant (QTL)-2			2	This QTL controls grain yield per plant, being located on chromosome 2 flanked by DNA markers RZ123 and RM208. This QTL shows additive-by additive interaction with qGYD-7-3.	 Character as QTL - Yield and productivity								
2562	qGYD-6-2 (GDY-6-2)	qGYD-6-2 (GDY-6-2)	grain yield per plant (QTL)-6-2	grain yield per plant (QTL)-6-2			6	This QTL controls grain yield per plant, being located on chromosome 6 flanked by DNA markers RZ828 and RG653. This QTL shows additive-by-additive interaction with qGYD-1-2.	 Character as QTL - Yield and productivity								
2563	qGYD-7-3 (GYD-7-3)	qGYD-7-3 (GYD-7-3)	grain yield per plant (QTL)-7-3	grain yield per plant (QTL)-7-3			7	This QTL controls grain yield per plant, being located on chromosome 7 flanked by DNA markers RZ989 and RM248. This QTL shows additive-by-additive interaction with qGYD-2.	 Character as QTL - Yield and productivity								
2564	qNP-1-1 (NP-1)	qNP-1-1 (NP-1)	number of panicles per plant (QTL)-1-1	number of panicles per plant (QTL)-1-1			1	This QTL controls number of panicles per plant, being located on chromosome 1 flanked by DNA markers RG381 and RG236.	 Character as QTL - Yield and productivity								
2565	qNP-2-1 (NP-2-1)	qNP-2-1 (NP-2-1)	number of panicles per plant (QTL)-2-1	number of panicles per plant (QTL)-2-1			2	This QTL controls number of panicles per plant, being located on chromosome 2 flanked by DNA markers RG555 and RZ915.	 Character as QTL - Yield and productivity								
2566	qNP-2-2 (NP-2-2)	qNP-2-2 (NP-2-2)	number of panicles per plant (QTL)-2-2	number of panicles per plant (QTL)-2-2			2	This QTL controls number of panicles per plant, being located on chromosome 2 flanked by DNA markers  RM262 and RZ717.	 Character as QTL - Yield and productivity								
2567	qNP-3-1 (NP-3-1)	qNP-3-1 (NP-3-1)	number of panicles per plant (QTL)-3-1	number of panicles per plant (QTL)-3-1			3	This QTL controls number of panicles per plant, being located on chromosome 3 flanked by DNA markers RM232 and RM218.	 Character as QTL - Yield and productivity								
2568	qNP-3-2 (NP-3-2)	qNP-3-2 (NP-3-2)	number of panicles per plant (QTL)-3-2	number of panicles per plant (QTL)-3-2			3	This QTL controls number of panicles per plant, being located on chromosome 3 flanked by DNA markers RZ328 and RZ575.	 Character as QTL - Yield and productivity								
2569	qNP-5-1 (NP-5)	qNP-5-1 (NP-5)	number of panicles per plant (QTL)-5-1	number of panicles per plant (QTL)-5-1			5	This QTL controls number of panicles per plant, being located on chromosome 5 flanked by DNA markers RZ296 and RG13.	 Character as QTL - Yield and productivity								
2570	qNFGP-3-2 (NFGP-3-2)	qNFGP-3-2 (NFGP-3-2)	number of filled grains per panicle (QTL)-3-2	number of filled grains per panicle (QTL)-3-2			3	This QTL controls number of filled grains per panicle, being located on chromosome 3 flanked by DNA markers RZ613 and RG418A. This QTL shows additivi-by-additive interaction with qNFGP-7-2.	 Character as QTL - Yield and productivity								
2571	qNFGP-4 (NFGP-4)	qNFGP-4 (NFGP-4)	number of filled grains per panicle (QTL)-4	number of filled grains per panicle (QTL)-4			4	This QTL controls number of filled grains per panicle, being located on chromosome 4 flanked by DNA markers RG214 and RG620. This QTL shows additive-by-additive interaction with qNFGP-6.	 Character as QTL - Yield and productivity								
2572	qTNSP-1-2 (TNSP-1-2)	qTNSP-1-2 (TNSP-1-2)	total number of spikelets per panicle (QTL)-1-2	total number of spikelets per panicle (QTL)-1-2			1	This QTL controls total number of spikelets per panicle, being located on chromosome 1 flanked by DNA markers RG146 and RZ154. It shows additive-by-additive epistasis interaction with qTNSP-7.	 Character as QTL - Yield and productivity								
2573	qTNSP-2-1 (TNSP-2-1)	qTNSP-2-1 (TNSP-2-1)	total number of spikelets per panicle (QTL)-2-1	total number of spikelets per panicle (QTL)-2-1			2	This QTL controls total number of spikelets per panicle, being located on chromosome 2 flanked by DNA markers RM71 and RZ324. It shows additive-by-additive epistatic interaction with qTNSP-6.	 Character as QTL - Yield and productivity								
2574	qTGWT-1-2 (TGWT-1-2)	qTGWT-1-2 (TGWT-1-2)	1000-grain weight (QTL)-1-2	1000-grain weight (QTL)-1-2			1	This QTL controls 1000-grain weight, being located on chromosome 2 flanked by DNA markers RG146 and RZ154. It shows additive-by-accitive epistatic interaction with qTGWT-1-3.	 Character as QTL - Yield and productivity								
2575	qTGWT-2-1(t) (TGWT-2-1)	qTGWT-2-1(t) (TGWT-2-1)	1000-grain weight (QTL)-2-1(t)	1000-grain weight (QTL)-2-1(t)			2	This QTL controls 1000-grain weight, being located on chromosome 2 flanked by DNA markers RZ401 and RZ318. It shows additive-by-additive epistatic interaction with qTGWT-5.	 Character as QTL - Yield and productivity								
2576	qTGWT-1-3 (TGWT-1-3)	qTGWT-1-3 (TGWT-1-3)	1000-grain weight (QTL)-1-3	1000-grain weight (QTL)-1-3			1	This QTL controls 1000-grain weight, being located on chromosome 1 flanked by DNA markers RZ730 and RZ538. It shows additive-by-additive epistatic interactions with qTGWT-1-1 and qTGWT-1-2.	 Character as QTL - Yield and productivity								
2577	RSB1	Rsb1, Rsb1*, RRS3	SHEATH BLIGHT RESISTANCE 1	rice sheath blight resistance1, rice sheath blight resistance 1, Rhizoctonia solani (sheath blight) resistance-3, Sheath blight resistance-3			5	This dominant gene is resistant to rice sheath blight (Rhizoctonia solani Kuhn). It is mapped on chromosome 5. PO:0020104; leaf sheath.	 Tolerance and resistance - Disease resistance			GR:0061321			GO:0009620 - response to fungus	TO:0000255 - sheath blight disease resistance	PO:0020104 - leaf sheath 
2578	qALCR-12-1 (QAlCr12.1)	qALCR-12-1 (QAlCr12.1)	control root length (QTL)-12-1	control root length (QTL)-12-1			12	This QTL controls root length under the non-stress Al condition in relation to aluminum tolerance, being located on chromosome 12 flanked by RFLP markers RG341 and RZ397.	 Tolerance and resistance - Stress tolerance								
2579	qALSR-2-1 (QAlSr2.1)	qALSR-2-1 (QAlSr2.1)	stress root length (QTL)-2-1	stress root length (QTL)-2-1			2	This QTL controls root length under Al stress conditions in relation to aluminum tolerance, being located on chromosome 2 flanked by RFLP markers RG139 and RG324.	 Tolerance and resistance - Stress tolerance								
2580	qALSR-3-1 (QAlSr3.1)	qALSR-3-1 (QAlSr3.1)	stress root length (QTL)-3-1	stress root length (QTL)-3-1			3	This QTL controls root length under Al stress conditions in relation to aluminum tolerance, being located on chromosome 3 flanked by RFLP markers CDO1395 and RG391.	 Tolerance and resistance - Stress tolerance								
2581	qALSR-8-1 (QAlSr8.1)	qALSR-8-1 (QAlSr8.1)	stress root length (QTL)-8-1	stress root length (QTL)-8-1			8	This QTL controls root length under Al stress conditions in relation to aluminum tolerance, being located on chromosome 8 flanked by RFLP markers RG28 and RM223.	 Tolerance and resistance - Stress tolerance								
2582	qALRR-1-1 (QAlRr1.1)	qALRR-1-1 (QAlRr1.1)	relative root length (QTL)-1-1	relative root length (QTL)-1-1			1	This QTL controls relative root length (ratio of root length under stress over non-stress conditions)  in relation to aluminum tolerance, being located on chromosome 1 flanked by RFLP markers RG406 and RZ252.	 Tolerance and resistance - Stress tolerance								
2583	qALRR-3-1 (QAlRr3.1)	qALRR-3-1 (QAlRr3.1)	relative root length (QTL)-3-1	relative root length (QTL)-3-1			3	This QTL controls relative root length (ratio of root length under Al stress over non-stress conditions) in relation to aluminum tolerance, being located on chromosome 3 flanked by RFLP markers CDO1 95 and RG391.	 Tolerance and resistance - Stress tolerance								
2584	qALRR-7-1 (QAlRr7.1)	qALRR-7-1 (QAlRr7.1)	relative root length (QTL)-7-1	relative root length (QTL)-7-1			7	This QTL controls relative root length (ratio of root length under Al stress over non-stress conditions) in relation to aluminum tolerance, being located on chromosome 7 flanked by RFLP markers RZ629 and RG650.	 Tolerance and resistance - Stress tolerance								
2585	qALRR-8-1 (QAlRr8.1)	qALRR-8-1 (QAlRr8.1)	relative root length (QTL)-8-1	relative root length (QTL)-8-1			8	This QTL controls relative root length (ratio of root length under Al stress over non-stress conditions) in relation to aluminum tolerance, being located on chromosome 8 flanked by RG26 and RM223.	 Tolerance and resistance - Stress tolerance								
2586	qALRR-9-1 (QAlRr9.1)	qALRR-9-1 (QAlRr9.1)	relative root length (QTL)-9-1	relative root length (QTL)-9-1			9	This QTL controls relative root length (ratio of root length under Al stress over non-stress conditions) in relation to aluminum tolerance, being located on chromosome 9 flanked by RFLP markers RM201 and WALI7.	 Tolerance and resistance - Stress tolerance								
2587	PI24	Pi24(t), Pi-24(t), Pi-24, Pi24	PYRICULARIA ORYZAE RESISTANCE 24	Pyricularia oryzae resistance-24(t), Magnaporthe grisea resistance 24(t), Blast resistance 24(t)			1	Dominant gene for blast resistance. It is located on chromosome 1 closely linked with marker K5. Original line is Azucena.	 Tolerance and resistance - Disease resistance					64.4	GO:0009620 - response to fungus		
2588	PI25	Pi25(t), Pi-25(t)	PYRICULARIA ORYZAE RESISTANCE 25	Pyricularia oryzae resistance-25(t), Blast resistance 25, Blast resistance 25			2	Dominant gene for blast resistance. It is located on chromosome 2, being closely linked with marker RG520. This gene may be the same as Pi-tq5. Original line is IR64 (Indica). Map position (157.9 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
2589	PI27	Pi27(t), Pi-27(t)	PYRICULARIA ORYZAE RESISTANCE 27	Pyricularia oryzae resistance-27(t), Magnaporthe grisea resistance 27, Blast resistance 27			6	Dominant gene for blast resistance. It is located on chromosome 6, being closely linked with a marker EST-2. Original line is IR64 (Indica).	 Tolerance and resistance - Disease resistance					51.9	GO:0009620 - response to fungus		
2590	PI26	Pi26(t), Pi-26(t)	PYRICULARIA ORYZAE RESISTANCE 26	Pyricularia oryzae resistance 26, Magnaporthe grisea resistance 26, Blast resistance 26			5	Dominant gene for blast resistance. It is located on chromosome 5, being closely linked with marker RG313. Map position (22.5-24.7 cM). Original line is Azucena (Japonica).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
2591	PI28	Pi28(t), Pi-28(t)	PYRICULARIA ORYZAE RESISTANCE 28	Pyricularia oryzae resistance-28(t), Magnaporthe grisea resistance 28, Blast resistance 28			10	Dominant gene for blast resistance. It is located on chromosome 10, being closely linked with marker RZ500. Original line is IR64 (Indica) x Azucena (Japonica).	 Tolerance and resistance - Disease resistance					114.7	GO:0009620 - response to fungus		
2592	qCTB-2-1(t) (qCTB2a)	qCTB-2-1(t) (qCTB2a)	cold resistance (QTL)-2-1	cold resistance (QTL)-2-1			2	This QTL controls cold resistance at booting stage measured by spilelet fertility. It is located on chromosome 2 flanked by markers RM324 and RM301.	 Tolerance and resistance - Stress tolerance								
2593	qCTB-9(t) (qCTB9)	qCTB-9(t) (qCTB9)	cold resistance (QTL)-9	cold resistance (QTL)-9			9	This QTL controls cold resistance at booting stage measured by spilelet fertility, being located on chromosome 9 flanked by markers RM257 and RM242.	 Tolerance and resistance - Stress tolerance								
2594	qCTB-1(t)  (qCTB1)	qCTB-1(t)  (qCTB1)	cold resistance (QTL)-1	cold resistance (QTL)-1			1	This QTL controls cold resistance at booting stage measured by spikelet fertility, being located on chromosome 1 flanked by markers RM151 and RM259.	 Tolerance and resistance - Stress tolerance								
2595	qCTB-2-2(t) (qCTB2b)	qCTB-2-2(t) (qCTB2b)	cold resitance (QTL)-2-2	cold resitance (QTL)-2-2			2	This QTL controls cold resistance at the booting stage measured by spikelet fertility, being located on chromosome 2 flanked by RM324 and RM301.	 Tolerance and resistance - Stress tolerance								
2596	qCTB-3(t) (qCTB3)	qCTB-3(t) (qCTB3)	cold resistance (QTL)-3(t)	cold resistance (QTL)-3(t)			3	This QTL controls cold resistance at the booting stage measured by spikelet fertility, being located on chromosome 3 flanked by markers RM156 and RM214.	 Tolerance and resistance - Stress tolerance								
2597	qCTB-5(t) (qCTB5)	qCTB-5(t) (qCTB5)	cold resistance (QTL)-5(t)	cold resistance (QTL)-5(t)			5	This QTL controls cold resistance at the booting stage, being located on chromosome 5 flanked by markers RM26 and RM334.	 Tolerance and resistance - Stress tolerance								
2598	qCTB-6 (t) (qCTL6)	qCTB-6 (t) (qCTL6)	cold resistance (QTL)-6(t)	cold resistance (QTL)-6(t)			6	This QTL controls cold resistance at the booting stage, being located on chromosome 6 flanked by markers RM50 and RM173.	 Tolerance and resistance - Stress tolerance								
2599	qCTB-7(t) (qCTB7)	qCTB-7(t) (qCTB7)	cold resistance (QTL)-7(t)	cold resistance (QTL)-7(t)			7	This QTL controls cold resistance at the booting stage, being located on chromosome 7 flanked by markers RM129 and RM81b.	 Tolerance and resistance - Stress tolerance								
2600	qCTB-12(t) (qCTB12)	qCTB-12(t) (qCTB12)	cold resistance (QTL)-12(t)	cold resistance (QTL)-12(t)			12	This QTL controls cold resistance at the booting stage, being located on chromosome 12 flanked by markers RM292 and RM260.	 Tolerance and resistance - Stress tolerance								
2602	GLU4	glu4a	GLUTELIN 4	rice glutelin-4a	GLUTELIN 4		1	This is the allele for glu4 (GluA-1) gene. This allele encodes polypeptide pI6.50/α-1 with deletion of pI6.71/α-2.	 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
2603	qHD-3-3(t) (QHd3)	qHD-3-3(t) (QHd3)	heading date (QTL)-3-3(t)	heading date (QTL)-3-3(t)			3	This QTL controls heading date, being located on chromosome 3 flanked by RFLP markers C515 and RG348a.	 Reproductive organ - Heading date								
2604	qHD-4(t)(QHd4)	qHD-4(t)(QHd4)	heading date (QTL)-4(t)	heading date (QTL)-4(t)			4	This QTL controls heading date, being located on chromosome 4 flanked by RFLP markers RZ590b and RG214.	 Reproductive organ - Heading date								
2605	qHD-7-5(t)(QHd7)	qHD-7-5(t)(QHd7)	heading date (QTL)-7-5(t)	heading date (QTL)-7-5(t)			7	This QTL controls heading date, being located on chromosome 7 flanked by RFLP markers C586 and CDO405.	 Reproductive organ - Heading date								
2606	qHD-8-1(t) (QHd8)	qHD-8-1(t) (QHd8)	heading date (QTL)-8-1(t)	heading date (QTL)-8-1(t)			8	This QTL controls heading date, being located on chromosome 8 flanked by RFLP markers G104 and G1314a.	 Reproductive organ - Heading date								
2607	qHD-11-2(t)(QHd11)	qHD-11-2(t)(QHd11)	heading date (QTL)-11-2(t)	heading date (QTL)-11-2(t)			11	This QTL controls heading date, being located on chromosome 11 flanked by RFLP markers RZ537b and RG16.	 Reproductive organ - Heading date								
2608	qHD-12-1(t)(QHd12)	qHD-12-1(t)(QHd12)	heading date (QTL)-12-1(t)	heading date (QTL)-12-1(t)			12	This QTL controls heading date, being located on chromosome 12 flanked by RFLP markers RG901a and G402.	 Reproductive organ - Heading date								
2609	qPH-3-3(t) (QPh3a)	qPH-3-3(t) (QPh3a)	plant height (QTL)-3-3(t)	plant height (QTL)-3-3(t)			3	This QTL controls plant height, being located on chromosome 3 flanked by RFLP markers RG104 and C515.	 Vegetative organ - Culm								
2610	qPH-3-4(t) (QPh3b, QPh3a)	qPH-3-4(t) (QPh3b, QPh3a)	plant height (QTL)-3-4(t)	plant height (QTL)-3-4(t)			3	This QTL controls plant height, being located on chromosome 3 flanked be RFLP markers RZ284 and RZ403b.	 Vegetative organ - Culm								
2611	qPH-4-2(t) (QPh4)	qPH-4-2(t) (QPh4)	plant height (QTL)-4-2(t)	plant height (QTL)-4-2(t)			4	This QTL controls plant height, being located on chromosome 4 flanked by Ph (Phenol staining) locus and RFLP marker G379.	 Vegetative organ - Culm								
2612	qPH-6-1(t) (QPh6)	qPH-6-1(t) (QPh6)	plant height (QTL)-6-1(t)	plant height (QTL)-6-1(t)			6	This QTL controls plant height, being located on chromosome 6 flanked by RFLP markers HHU37 and RZ682.	 Vegetative organ - Culm								
2613	qPH-8-1(t) (QPh8)	qPH-8-1(t) (QPh8)	plant height (QTL)-8-1(t)	plant height (QTL)-8-1(t)			8	This QTL controls plant height, being located on chromosome 8 flanked by RFLP markers CSU754 and G104.	 Vegetative organ - Culm								
2614	qFLL-2-1(t) (QFll2)	qFLL-2-1(t) (QFll2)	flag leaf length (QTL)-2-1(t)	flag leaf length (QTL)-2-1(t)			2	This QTL controls flag leaf length, being located on chromosome 2 flanked by RFLP markers RG520 and RZ446b.	 Character as QTL - Plant growth activity								
2615	qFLL-3-1(t) (QFll3)	qFLL-3-1(t) (QFll3)	flag leaf length (QTL)-3-1(t)	flag leaf length (QTL)-3-1(t)			3	This QTL controls flag leaf length, being located on chromosome 3 flanked by RFLP markers G249 and RG418.	 Character as QTL - Plant growth activity								
2616	qFLW-1-1(t) (QFlw1)	qFLW-1-1(t) (QFlw1)	flag leaf width (QTL)-1-1(t)	flag leaf width (QTL)-1-1(t)			1	This QTL controls flag leaf width, being located on chromosome 1 flanked by RFLP markers C131 and RG472.	 Vegetative organ - Leaf								
2617	qFLW-4-1(t) (QFlw4)	qFLW-4-1(t) (QFlw4)	flag leaf width (QTL)-4-1(t)	flag leaf width (QTL)-4-1(t)			4	This QTL controls flag leaf width, being located on chromosome 4 flanked by Ph (Phenol staining) locus and RFLP marker G379.	 Vegetative organ - Leaf								
2618	qFLW-6-1(t) (QFlw6)	qFLW-6-1(t) (QFlw6)	flag leaf width (QTL)-6-1(t)	flag leaf width (QTL)-6-1(t)			6	This QTL controls flag leaf width, being located on chromosome 6 flanked by RFLP markers RZ682 and C236.	 Vegetative organ - Leaf								
2619	qFLW-8-1(t) (QFlw8)	qFLW-8-1(t) (QFlw8)	flag leaf width (QTL)-8-1(t)	flag leaf width (QTL)-8-1(t)			8	This QTL controls flag leaf width, being located on chromosome 8 flanked by RFLP markers G56a and R662a.	 Vegetative organ - Leaf								
2620	qFLW-12-1(t) (QFlw12)	qFLW-12-1(t) (QFlw12)	flag leaf width (QTL)-12-1(t)	flag leaf width (QTL)-12-1(t)			12	This QTL controls flag leaf width, being located on chromosome 12 flanked by RFLP markers RG341a and RG869.	 Vegetative organ - Leaf								
2621	qPL-2-1(t) (QPl2)	qPL-2-1(t) (QPl2)	panicle length (QTL)-2-1(t)	panicle length (QTL)-2-1(t)			2	This QTL controls panicle length, being located on chromosome 2 flanked by RFLP markers RG520 and RZ446b.	 Reproductive organ - Inflorescence								
2622	qPL-8-1(t) (QPl8)	qPL-8-1(t) (QPl8)	panicle length (QTL)-8-1(t)	panicle length (QTL)-8-1(t)			8	This QTL controls panicle length, being located on chromosome 8 flanked by RFLP markers CSU754 and G104.	 Reproductive organ - Inflorescence								
2623	qPL-10-1(t) (QPl10)	qPL-10-1(t) (QPl10)	panicle length (QTL)-10-1(t)	panicle length (QTL)-10-1(t)			10	This QTL controls panicle length, being located on chromosome 10 flanked by RFLP markers CDO98 and RG752.	 Reproductive organ - Inflorescence								
2624	qSN-1-1(t) (QSn1)	qSN-1-1(t) (QSn1)	spikelet number per panicle (QTL)-1-1(t)	spikelet number per panicle (QTL)-1-1(t)			1	This QTL controls spikelet number per panicle, being located on chromosome 1 flanked by RFLP markers RG236 and RZ801.	 Reproductive organ - Inflorescence								
2625	qSN-3-1(t) (QSn3)	qSN-3-1(t) (QSn3)	spikelet number per panicle (QTL)-3-1(t)	spikelet number per panicle (QTL)-3-1(t)			3	This QTL controls spikelet number per panicle, being located on chromosome 3 flanked by RFLP markers G249 and RG418.	 Reproductive organ - Inflorescence								
2626	qSN-6-1(t) (QSn6)	qSN-6-1(t) (QSn6)	spikelet number per panicle (QTL)-6-1(t)	spikelet number per panicle (QTL)-6-1(t)			6	This QTL controls spikelet number per panicle, being located on chromosome 6 flanked by RFLP markers RG653 and RZ508.	 Reproductive organ - Inflorescence								
2627	qSN-11-1(t) (QSn11)	qSN-11-1(t) (QSn11)	spikelet number per panicle (QTL)-11-1(t)	spikelet number per panicle (QTL)-11-1(t)			11	This QTL controls spikelet number per panicle, being located on chromosome 11 flanked by RFLP markers RZ900 and G44.	 Reproductive organ - Inflorescence								
2628	qSF-3-1(t) (QSf3)	qSF-3-1(t) (QSf3)	spikelet fertility (QTL)-3-1(t)	spikelet fertility (QTL)-3-1(t)			3	This QTL controls spikelet fertility, being located on chromosome 3 flanked by RFLP markers RG348a and C636x.	 Character as QTL - Yield and productivity								
2629	qSF-5-1(t) (QSf5)	qSF-5-1(t) (QSf5)	spikelet fertility (QTL)-5-1(t)	spikelet fertility (QTL)-5-1(t)			5	This QTL controls spikelet fertility, being located on chromosome 5 flanked by RFLP markers Y1049 and R569a.	 Character as QTL - Yield and productivity								
2630	qSF-6-1(t) (QSf6)	qSF-6-1(t) (QSf6)	spikelet fertility (QTL)-6(t)	spikelet fertility (QTL)-6(t)			6	This QTL controls spikelet fertility, being located on chromosome 6 flanked by RFLP marker RZ2 and C (Chromogen of anthocyanin) locus.	 Character as QTL - Yield and productivity								
2631	qSF-7-1(t) (QSf7)	qSF-7-1(t) (QSf7)	spikelet fertility (QTL)-7-1(t)	spikelet fertility (QTL)-7-1(t)			7	This QTL controls spikelet fertility, being located on chromosome 7 flanked by RFLP markers RG30 and RG29.	 Character as QTL - Yield and productivity								
2632	qSF-8-1(t) (QSf8)	qSF-8-1(t) (QSf8)	spikelet fertility (QTL)-8-1(t)	spikelet fertility (QTL)-8-1(t)			8	This QTL controls spikelet fertility, being located on chromosome 8 flanked by RFLP markers G2140 and RZ323a.	 Character as QTL - Yield and productivity								
2633	qSF-10-2(t) (QSf10)	qSF-10-2(t) (QSf10)	spikelet fertility (QTL)-10-2(t)	spikelet fertility (QTL)-10-2(t)			10	This QTL controls spikelet fertility, being located on chromosome 10 flanked by RFLP markers RG561 and C223.	 Character as QTL - Yield and productivity								
2634	qSF-11-1(t) (QSf11)	qSF-11-1(t) (QSf11)	spikelet fertility (QTL)-11-1(t)	spikelet fertility (QTL)-11-1(t)			11	This QTL controls spikelet fertility, being located on chromosome 11 flanked by RFLP markers RZ797b and RG1049d.	 Character as QTL - Yield and productivity								
2635	IM1	OsIM1, OsIM1a, OsIM2, OsIM, PTOX1	OSIMASE	OsIMase, plastid terminal oxidase 1	OSIMASE	ptox1, ptox1-1, ptox1-2	4	AOX homologous gene. AF085174 (OsIM1). AF288401 (OsIM2). A pseudo-transcript (OsIM2), which probably resulted from the abnormal splicing of the OsIM1 pre-mRNA, was also identified. OsIM1a is the same as OsIM1 except that its 3'-UTR lacked a 26-bp nucleotide sequence. GO:1901172: phytoene metabolic process. GO:1901601: strigolactone biosynthetic process. GO:2000032: regulation of secondary shoot formation. the rice ortholog of Arabidopsis thaliana IMMUTANS (IM)/Solanum lycopersicum GHOST.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os04g0668900	LOC_Os04g57320.2, LOC_Os04g57320.1	GR:0061337			GO:0046872 - metal ion binding, GO:0070469 - respiratory chain, GO:0009579 - thylakoid, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0022900 - electron transport chain, GO:0016117 - carotenoid biosynthetic process, GO:0016021 - integral to membrane, GO:0009657 - plastid organization, GO:0009507 - chloroplast, GO:0009916 - alternative oxidase activity, GO:0009688 - abscisic acid biosynthetic process, GO:0007585 - respiratory gaseous exchange	TO:0000069 - variegated leaf, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0002639 - shoot branching, TO:0000329 - tillering ability, TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0000478 - abscisic acid concentration, TO:0002672 - auxin content	
2636	qDTH-1-2(t)(dth1.1)	qDTH-1-2(t)(dth1.1)	days to heading (QTL)-1-2(t)	days to heading (QTL)-1-2(t)			1	This QTL controls days to heading, being located on chromosome 1 flanked by markers RZ288 and RM140.	 Reproductive organ - Heading date								
2637	qDTH-1-3(t)(dth1.2)	qDTH-1-3(t)(dth1.2)	days to heading (QTL)-1-3(t)	days to heading (QTL)-1-3(t)			1	This QTL controls days to heading, being located on chromosome 1 flanked by markers RZ730 and RZ801.	 Reproductive organ - Heading date								
2638	qDTH-2-3(t)(dth2.1)	qDTH-2-3(t)(dth2.1)	days to heading (QTL)-2-3(t)	days to heading (QTL)-2-3(t)			2	This QTL controls days to heading, being located on chromosome 2 flanked by markers RM106 and RM221.	 Reproductive organ - Heading date								
2639	qDTH-3-2(t)(dth3.1)	qDTH-3-2(t)(dth3.1)	days to heading (QTL)-3-2(t)	days to heading (QTL)-3-2(t)			3	This QTL controls days to heading, being located on chromosome 3 flanked by markers RM60 and RM231.	 Reproductive organ - Heading date								
2640	qDTH-3-3(t)(dth3.2)	qDTH-3-3(t)(dth3.2)	days to heading (QTL)-3-3(t)	days to heading (QTL)-3-3(t)			3	This QTL controls days to heading, being located on chromosome 3 flanked by markers RM7 and RM282.	 Reproductive organ - Heading date								
2641	qDTH-3-4(t)(dth3.3)	qDTH-3-4(t)(dth3.3)	days to heading (QTL)-3-4(t)	days to heading (QTL)-3-4(t)			3	This QTL controls days to heading, being located on chromosome 3 flanked by markers RM16 and RZ448.	 Reproductive organ - Heading date								
2642	qDTH-3-5(t)(dth3.4)	qDTH-3-5(t)(dth3.4)	days to heading (QTL)-3-5(t)	days to heading (QTL)-3-5(t)			3	This QTL controls days to heading, being located on chromosome 3 closely linked with marker RM130.	 Reproductive organ - Heading date								
2643	qDTH-4-3(t)(dth4.1)	qDTH-4-3(t)(dth4.1)	days to heading (QTL)-4-3(t)	days to heading (QTL)-4-3(t)			4	This QTL controls days to heading, being located on chromosome 4 closely linked with marker RM307.	 Reproductive organ - Heading date								
2644	qDTH-4-4(t)(dth4.2)	qDTH-4-4(t)(dth4.2)	days to heading (QTL)-4-4(t)	days to heading (QTL)-4-4(t)			4	This QTL controls days to heading, being located on chromosome 4 flanked by markers RZ740 and RM303.	 Reproductive organ - Heading date								
2645	qDTH-7-1	qDTH-7-1, qDTH-7-1(t)(dth7.1)	days to heading (QTL)-7-1	days to heading (QTL)-7-1			7	This QTL controls days to heading, being located on chromosome 7 flanked by markers RM125 and RM336.	 Reproductive organ - Heading date								
2646	qDTH-10-1(t)(dth10.1)	qDTH-10-1(t)(dth10.1)	days to heading (QTL)-10-1(t)	days to heading (QTL)-10-1(t)			10	This QTL controls days to heading, being located on chromosome 10 flanked by markers RM184 and RM271.	 Reproductive organ - Heading date								
2647	qGPP-1-1(t) (gpp1,1)	qGPP-1-1(t) (gpp1,1)	grains per panicle (QTL)-1-1(t)	grains per panicle (QTL)-1-1(t)			1	This QTL controls grain number per panicle as a yield component, being located on chromosome 1 flanked by markers RM283 and RM259.	 Character as QTL - Yield and productivity								
2648	qGPP-1-2(t) (gpp1.2)	qGPP-1-2(t) (gpp1.2)	grains per panicle (QTL)-1-2(t)	grains per panicle (QTL)-1-2(t)			1	This QTL controls grain numer per panicle as a yield component, being located on chromosome 1 flanked by markers RM5 and RM237.	 Character as QTL - Yield and productivity								
2649	qGPP-2-1(t) (gpp2.1)	qGPP-2-1(t) (gpp2.1)	grains per panicle (QTL)-2-1(t)	grains per panicle (QTL)-2-1(t)			2	This QTL controls grain number per panicle, being located on chromosome 2 closely linked with marker CDO718.	 Character as QTL - Yield and productivity								
2650	qGPP-3-1(t) (gpp3.1)	qGPP-3-1(t) (gpp3.1)	grains per panicle (QTL)-3-1(t)	grains per panicle (QTL)-3-1(t)			3	This QTL controls grain number per panicle as a yield component, being located on chromosome 3 flanked by markers RM130 and RG1356.	 Character as QTL - Yield and productivity								
2651	qGPP-4-1(t) (gpp4.1)	qGPP-4-1(t) (gpp4.1)	grains per panicle (QTL)-4-1(t)	grains per panicle (QTL)-4-1(t)			4	This QTL controls grain number per panicle as a yield component, being located on chromosome 4 flanked by markers RZ740 and RZ590.	 Character as QTL - Yield and productivity								
2652	qGPP-8-1(t) (gpp8.1)	qGPP-8-1(t) (gpp8.1)	grains per panicle (QTL)-8-1(t)	grains per panicle (QTL)-8-1(t)			8	This QTL controls grain number per panicle as a yield component, being located on chromosome 8 closely linked with marker RM210.	 Character as QTL - Yield and productivity								
2653	qGPP-9-1(t) (gpp9.1)	qGPP-9-1(t) (gpp9.1)	grains per panicle (QTL)-9-1(t)	grains per panicle (QTL)-9-1(t)			9	This QTL controls grain number per panicle as a yield component, being located on chromosome 9 closely linked with marker RM215.	 Character as QTL - Yield and productivity								
2654	qGPP-11-1(t) (gpp11.1)	qGPP-11-1(t) (gpp11.1)	grains per panicle (QTL)-11-1(t)	grains per panicle (QTL)-11-1(t)			11	This QTL controls grain number per panicle as a yield component, being located on chromosome 11 closely linked with marker RM254.	 Character as QTL - Yield and productivity								
2655	qGPP-12-1(t) (gpp12.1)	qGPP-12-1(t) (gpp12.1)	grains per panicle (QTL)-12-1(t)	grains per panicle (QTL)-12-1(t)			12	This QTL controls grain number per panicle as a yield component, being located on chromosome 12 closely linked with marker CDO1338.	 Character as QTL - Yield and productivity								
2656	qGPP-12-2(t) (gpp12.2)	qGPP-12-2(t) (gpp12.2)	grains per panicle (QTL)-12-2(t)	grains per panicle (QTL)-12-2(t)			12	This QTL controls grain number per panicle as a yield component, being located on chromosome 12 closely linked with marker RG869.	 Character as QTL - Yield and productivity								
2657	qSPP-1-1(t)(spp1.1)	qSPP-1-1(t)(spp1.1)	spikelets per panicle (QTL)-1-1(t)	spikelets per panicle (QTL)-1-1(t)			1	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 1 flanked by markers RM283 and RM259.	 Reproductive organ - Inflorescence								
2658	qSPP-1-2(t)(spp1.2)	qSPP-1-2(t)(spp1.2)	spikelets per panicle (QTL)-1-2(t)	spikelets per panicle (QTL)-1-2(t)			1	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 1 flanked by markers RM237 and RM128.	 Reproductive organ - Inflorescence								
2659	qSPP-2-1(t)(spp2.1)	qSPP-2-1(t)(spp2.1)	spikelets per panicle (QTL)-2-1(t)	spikelets per panicle (QTL)-2-1(t)			2	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 2 closely linked with marker CDO718.	 Reproductive organ - Inflorescence								
2660	qSPP-3-1(t)(spp3.1)	qSPP-3-1(t)(spp3.1)	spikelets per panicle (QTL)-3-1(t)	spikelets per panicle (QTL)-3-1(t)			3	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 3 flanked by markers RM130 and RG1356.	 Reproductive organ - Inflorescence								
2661	qSPP-9-1(t)(spp9.1)	qSPP-9-1(t)(spp9.1)	spikelets per panicle (QTL)-9-1(t)	spikelets per panicle (QTL)-9-1(t)			9	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 9 closely linked with marker RM215.	 Reproductive organ - Inflorescence								
2662	qSPP-12-1(t)(spp12.1)	qSPP-12-1(t)(spp12.1)	spikelets per panicle (QTL)-12-1(t)	spikelets per panicle (QTL)-12-1(t)			12	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 12 closely linked with marker RG869.	 Reproductive organ - Inflorescence								
2663	qPL-1-1(t) (pl1.1)	qPL-1-1(t) (pl1.1)	panicle length (QTL)-1-1(t)	panicle length (QTL)-1-1(t)			1	This QTL controls panicle length as a yield component, being located on chromosome 1 flanked by RZ730 and RZ801.	 Reproductive organ - Inflorescence								
2664	qPL-2-2(t) (pl2.1)	qPL-2-2(t) (pl2.1)	panicle length (QTL)-2-2(t)	panicle length (QTL)-2-2(t)			2	This QTL controls panicle length as a yield component, being flanked by markers RM221 and RM250.	 Reproductive organ - Inflorescence								
2665	qPL-4-1(t) (pl4.1)	qPL-4-1(t) (pl4.1)	panicle length (QTL)-4-1(t)	panicle length (QTL)-4-1(t)			4	This QTL controls panicle length as a yield component, being located on chromosome 4 flanked by markers RM307 and RM185.	 Reproductive organ - Inflorescence								
2666	qPL-9-1(t) (pl9.1)	qPL-9-1(t) (pl9.1)	panicle length (QTL)-9-1(t)	panicle length (QTL)-9-1(t)			9	This QTL contols panicle length as a yield component, being located on chromosome 9 closely linked with marker RM215.	 Reproductive organ - Inflorescence								
2667	qPL-10-2(t) (pl10.1)	qPL-10-2(t) (pl10.1)	panicle length (QTL)-10-2(t)	panicle length (QTL)-10-2(t)			10	This QTL controls panicle length as a yield component, being located on chromosome 10 closely linked with marker RM311.	 Reproductive organ - Inflorescence								
2668	qPL-12-1(t) (pl12.1)	qPL-12-1(t) (pl12.1)	panicle length (QTL)-12-1(t)	panicle length (QTL)-12-1(t)			12	This QTL controls panicle length as a yield component, being located on chromosome 12 closely linked with marker RG901.	 Reproductive organ - Inflorescence								
2669	qPSS-1-1(t) (pss1.1)	qPSS-1-1(t) (pss1.1)	percent seed set (QTL)-1-1(t)	percent seed set (QTL)-1-1(t)			1	This QTL controls percent seed set as a yield component, being located on chromosome 1 flanked by markers RM265 and RM315.	 Character as QTL - Seed sterility								
2670	qPSS-3-1(t) (pss3.1)	qPSS-3-1(t) (pss3.1)	percent seed set (QTL)-3-1(t)	percent seed set (QTL)-3-1(t)			3	This QTL controls percent seed set as a yield component, being located on chromosome 3 closely linked with RM130.	 Character as QTL - Seed sterility								
2671	qPSS-4-1(t) (pss4.1)	qPSS-4-1(t) (pss4.1)	percent seed set (QTL)-4-1(t)	percent seed set (QTL)-4-1(t)			4	This QTL controls percent seed set as a yield component, being located on chromosome 4 flanked by markers RZ740 and RZ590.	 Character as QTL - Seed sterility								
2672	qPSS-5-1(t) (pss5.1)	qPSS-5-1(t) (pss5.1)	percent seed set (QTL)-5-1(t)	percent seed set (QTL)-5-1(t)			5	This QTL controls percent seed set as a yield component, being located on chromosome 5 closely linked with marker RM153.	 Character as QTL - Seed sterility								
2673	qPSS-5-2(t) (pss5.2)	qPSS-5-2(t) (pss5.2)	percent seed set (QTL)-5-2(t)	percent seed set (QTL)-5-2(t)			5	This QTL controls percent seed set as a yield component, being located on chromosome 5 flanked by markers RM173 and RM178.	 Character as QTL - Seed sterility								
2674	qPSS-6-1(t) (pss6.1)	qPSS-6-1(t) (pss6.1)	percent seed set (QTL)-6-1(t)	percent seed set (QTL)-6-1(t)			6	This QTL controls percent seed set as a yield component, being located on chromosome 6 flanked by markers RM276 and RM3.	 Character as QTL - Seed sterility								
2675	qPSS-10-1(t) (pss10.1)	qPSS-10-1(t) (pss10.1)	percent seed set (QTL)-10-1(t)	percent seed set (QTL)-10-1(t)			10	This QTL controls percent seed set as a yield component, being located on chromosome 10 flanked by markers CDO98 and RM333.	 Character as QTL - Seed sterility								
2676	qGW-1-1(t) (gw1.1)	qGW-1-1(t) (gw1.1)	grain weight (QTL)-1-1(t)	grain weight (QTL)-1-1(t)			1	This QTL controls grain weight as a yield component, being located on chromosome 1 flanked by markers RM104 and RG331.	 Character as QTL - Yield and productivity								
2677	qGW-2-1(t) (gw2.1)	qGW-2-1(t) (gw2.1)	grain weight (QTL)-2-1(t)	grain weight (QTL)-2-1(t)			2	This QTL controls grain weight as a yield component, being located on chromosome 2 flanked by markers RM240 and RM266.	 Character as QTL - Yield and productivity								
2678	qGW-3-2(t) (gw3.1)	qGW-3-2(t) (gw3.1)	grain weight (QTL)-3-2(t)	grain weight (QTL)-3-2(t)			3	This QTL controls grain weight as a yield component, being located on chromosome 3 flanked by markers RZ672 and RZ474.	 Character as QTL - Yield and productivity								
2679	qGW-3-3(t) (gw3.2)	qGW-3-3(t) (gw3.2)	grain weight (QTL)-3-3(t)	grain weight (QTL)-3-3(t)			3	This QTL controls grain weight as a yield component, being located on chromosome 3 flanked by markers RM130 and RG1356.	 Character as QTL - Yield and productivity								
2680	qGW-5-3(t) (gw5.1)	qGW-5-3(t) (gw5.1)	grain weight (QTL)-5-3(t)	grain weight (QTL)-5-3(t)			5	This QTL controls grain weight as a yield component, being located on chromosome 5 flanked by markers RM305 and RM173.	 Character as QTL - Yield and productivity								
2681	qGW-9-1(t) (gw9.1)	qGW-9-1(t) (gw9.1)	grain weight (QTL)-9-1(t)	grain weight (QTL)-9-1(t)			9	This QTL controls grain weight as a yield component, being located on chromosome 9 closely linked with marker RM242.	 Character as QTL - Yield and productivity								
2682	qGW-10-1(t) (gw10.1)	qGW-10-1(t) (gw10.1)	grain weight (QTL)-10-1(t)	grain weight (QTL)-10-1(t)			10	This QTL controls grain weight as a yield component, being located on chromosome 10 closely linked with marker RM311.	 Character as QTL - Yield and productivity								
2683	qGW-12-1(t) (gw12.1)	qGW-12-1(t) (gw12.1)	grain weight (QTL)-12-1(t)	grain weight (QTL)-12-1(t)			12	This QTL controls grain weight as a yield component, being located on chromosome 12 flanked by markers RG901 and RM17.	 Character as QTL - Yield and productivity								
2684	qPPL-3-1(t) (ppl3.1)	qPPL-3-1(t) (ppl3.1)	panicles per plant (QTL)-3-1(t)	panicles per plant (QTL)-3-1(t)			3	This QTL controls panicle number per plant as a yield component, being located on chromosome 3 flanked by markers RM156 and RM16.	 Character as QTL - Yield and productivity								
2685	qPPL-7-1(t) (ppl7.1)	qPPL-7-1(t) (ppl7.1)	panicles per plant (QTL)-7-1(t)	panicles per plant (QTL)-7-1(t)			7	This QTL controls panicle number per plant as a yield component, being located on chromosome 7 closely linked with marker RM234.	 Character as QTL - Yield and productivity								
2686	qYLD-2-1(t) (yld2.1)	qYLD-2-1(t) (yld2.1)	yield per plant (QTL)-2-1(t)	yield per plant (QTL)-2-1(t)			2	This QTL controls yield per plant, being located on chromosome 2 closely linked with marker CDO718.	 Character as QTL - Yield and productivity								
2687	qYLD-3-1(t) (yld3.1)	qYLD-3-1(t) (yld3.1)	yield per plant (QTL)-3-1(t)	yield per plant (QTL)-3-1(t)			3	This QTL controls yield per plant, being located on chromosome 3 flanked by markers RZ452 and RM16.	 Character as QTL - Yield and productivity								
2688	qYLD-3-2(t) (yld3.2)	qYLD-3-2(t) (yld3.2)	yield per plant (QTL)-3-2(t)	yield per plant (QTL)-3-2(t)			3	This QTL controls yield per plant, being located on chromosome 3 flanked by markers RM130 and RM16.	 Character as QTL - Yield and productivity								
2689	qYLD-6-1(t) (yld6.1)	qYLD-6-1(t) (yld6.1)	yield per plant (QTL)-6-1(t)	yield per plant (QTL)-6-1(t)			6	This QTL controls yield per plant, being locted on chromosome 6 closely linked with marker RM276.	 Character as QTL - Yield and productivity								
2690	qYLD-9-1(t) (yld9.1)	qYLD-9-1(t) (yld9.1)	yield per plant (QTL)-9-1(t)	yield per plant (QTL)-9-1(t)			9	This QTL controls yield per plant,being located on chromosome 9 closely linked with marker RM215.	 Character as QTL - Yield and productivity								
2691	qPH-1-2(t) (ph1.1)	qPH-1-2(t) (ph1.1)	plant height (QTL)-1-2(t)	plant height (QTL)-1-2(t)			1	This QTL controls plant height, being located on chromosome 1 closely linked with marker RG811.	 Vegetative organ - Culm								
2692	qPH-1-3(t) (ph1.2)	qPH-1-3(t) (ph1.2)	plant height (QTL)-1-3(t)	plant height (QTL)-1-3(t)			1	This QTL controls plant height, being located on chromosome 1 flanked by markers RZ730 and RZ331.	 Vegetative organ - Culm								
2693	qSH-1-3(t) (sh1.1)	qSH-1-3(t) (sh1.1)	shatterring (QTL)-1-3(t)	shatterring (QTL)-1-3(t)			1	This QTL controls seed shattering, being located on chromosome 1 flanked by markers RM315 and RG331.	 Seed - Physiological traits - Shattering								
2694	qSH-3-2(t) (sh3.1)	qSH-3-2(t) (sh3.1)	shattering (QTL)-3-2(t)	shattering (QTL)-3-2(t)			3	This QTL controls seed shattering, being located on chromosome 3 closely linked with marker RM60.	 Seed - Physiological traits - Shattering								
2695	qSH-4-3(t) (sh4.1)	qSH-4-3(t) (sh4.1)	shattering (QTL)-4-3(t)	shattering (QTL)-4-3(t)			4	This QTL controls seed shattering, being located on chromosome 4 flanked by markers RZ656 and RM185.	 Seed - Physiological traits - Shattering								
2696	qSH-3-3(t) (sh3.2)	qSH-3-3(t) (sh3.2)	shattering (QTL)-3-3(t)	shattering (QTL)-3-3(t)			3	This QTL controls seed shattering, being located on chromosome 3 closely linked with marker RM282.	 Seed - Physiological traits - Shattering								
2697	qSH-7-1(t) (sh7.1)	qSH-7-1(t) (sh7.1)	shattering (QTL)-7-1(t)	shattering (QTL)-7-1(t)			7	This QTL controls seed shattering, being located on chromosome 7 flanked by markers RG30 and RM214.	 Seed - Physiological traits - Shattering								
2698	qSH-8-2(t) (sh8.1)	qSH-8-2(t) (sh8.1)	shattering (QTL)-8-2(t)	shattering (QTL)-8-2(t)			8	This QTL controls seed shattering, being located on chromosome 8 flanked by markers RM44 and RM42.	 Seed - Physiological traits - Shattering								
2699	qGRM-1-1(t) (grm1.1)	qGRM-1-1(t) (grm1.1)	percent germination (QTL)-1-1(t)	percent germination (QTL)-1-1(t)			1	This QTL controls percent germination, being located on chromosome 1 flanked by markers RM5 and RM306.	 Character as QTL - Germination								
2700	qGRM-4-1(t) (grm4.1)	qGRM-4-1(t) (grm4.1)	percent germination (QTL)-4-1(t)	percent germination (QTL)-4-1(t)			4	This QTL controls percent germination, being located on chromosome 4 flanked by markers RM119 and RM303.	 Character as QTL - Germination								
2701	qGRM-6-1(t) (grm6.1)	qGRM-6-1(t) (grm6.1)	percent germination (QTL)-6-1(t)	percent germination (QTL)-6-1(t)			6	This QTL controls percent germination, being located on chromosome 6 flanked by markers RM170 and RM204.	 Character as QTL - Germination								
2702	qAWN-4-1(t) (awn4.1)	qAWN-4-1(t) (awn4.1)	awns (QTL)-4-1(t)	awns (QTL)-4-1(t)			4	This QTL controls awn length (rank), being located on chromosome 4 flanked by markers RM307 and RM185.	 Reproductive organ - Inflorescence								
2703	qAWN-8-1(t) (awn8.1)	qAWN-8-1(t) (awn8.1)	awns (QTL)-8-1(t)	awns (QTL)-8-1(t)			8	This QTL controls awn length (rank), being located on chromosome 8 closely linked with marker RM264.	 Reproductive organ - Inflorescence								
2704	qTT-2-1(t) (tt2.1)	qTT-2-1(t) (tt2.1)	tiller type (QTL)-2-1(t)	tiller type (QTL)-2-1(t)			2	This QTL controls tiller type, being located on chromosome 2 flanked by markers RM318 and RM250.	 Character as QTL - Plant growth activity								
2705	qTT-5-1(t) (tt5.1)	qTT-5-1(t) (tt5.1)	tiller type (QTL)-5-1(t)	tiller type (QTL)-5-1(t)			5	This QTL controls tiller type, being located on chromosome 5 closely linked with marker RM274.	 Character as QTL - Plant growth activity								
2706	qTT-9-1(t) (tt9.1)	qTT-9-1(t) (tt9.1)	tiller type (QTL)-9-1(t)	tiller type (QTL)-9-1(t)			9	This QTL controls tiller type, being located on chromosome 9 flanked by markers RZ422 and RM245.	 Character as QTL - Plant growth activity								
2707	qYLD-9-2(t) (qYLD9-1)	qYLD-9-2(t) (qYLD9-1)	yield per plant (QTL)-9-2(t)	yield per plant (QTL)-9-2(t)			9	This QTL controls grain yield per plant, being located on chromosome 9 flanked by markers RZ12 and RM201.	 Character as QTL - Yield and productivity								
2708	qYLD-4-1(t) (qYLD4-1)	qYLD-4-1(t) (qYLD4-1)	yield per plant (QTL)-4-1(t)	yield per plant (QTL)-4-1(t)			4	This QTL controls grain yield per plant, being located on chromosome 4 flanked by markers RG91 and RG449.	 Character as QTL - Yield and productivity								
2709	qYLD-10-1(t) (qYLD10-1)	qYLD-10-1(t) (qYLD10-1)	yield per plant (QTL)-10-1(t)	yield per plant (QTL)-10-1(t)			10	This QTL controls grain yield pr plant, being located on chromosome 10 flanked by markers RG257 and RG241.	 Character as QTL - Yield and productivity								
2710	qBMS-1-1(t) (qBMS1-1)	qBMS-1-1(t) (qBMS1-1)	biomass per plant (QTL)-1-1(t)	biomass per plant (QTL)-1-1(t)			1	This QTL controls biomass per plant, being located on chromosome 1 flanked be markers RG810 and RZ801.	 Character as QTL - Yield and productivity								
2711	qBMS-1-2(t) (qBMS1-2)	qBMS-1-2(t) (qBMS1-2)	biomass per plant (QTL)-1-2(t)	biomass per plant (QTL)-1-2(t)			1	This QTL controls biomass per plant, being located on chromosome 1 flanked by markers RZ801 and RG331.	 Character as QTL - Yield and productivity								
2712	qBMS-3-1(t) (qBMS3-1)	qBMS-3-1(t) (qBMS3-1)	biomass per plant (QTL)-3-1(t)	biomass per plant (QTL)-3-1(t)			3	This QTL controls biomass per plant, being located on chromosome 3 flanked by markers RZ284 and pRD10A.	 Character as QTL - Yield and productivity								
2713	qBMS-4-1(t) (qBMS4-1)	qBMS-4-1(t) (qBMS4-1)	biomass per plant (QTL)-4-1(t)	biomass per plant (QTL)-4-1(t)			4	This QTL controls biomass per plant, being located on chromosome 4 flanked by markers RG190 and RG908.	 Character as QTL - Yield and productivity								
2714	qBMS-7-1(t) (qBMS7-1)	qBMS-7-1(t) (qBMS7-1)	biomass per plant (QTL)-7-1(t)	biomass per plant (QTL)-7-1(t)			7	This QTL controls biomass per plant, being located on chromosome 7 flanked by markers RZ488 and RG477.	 Character as QTL - Yield and productivity								
2715	qBMS-7-2(t) (qBMS7-2)	qBMS-7-2(t) (qBMS7-2)	biomass per plant (QTL)-7-2(t)	biomass per plant (QTL)-7-2(t)			7	This QTL controls biomass per plant, being located on chromosome 7 flanked by markers RG477 and PGMS0.7.	 Character as QTL - Yield and productivity								
2716	qFRP-4-1(t) (qFRP4-1)	qFRP-4-1(t) (qFRP4-1)	fertility percentage (QTL)-4-1(t)	fertility percentage (QTL)-4-1(t)			4	This QTL controls fertility percentage, being located on chromosome 4 flanked by markers RG449 and RG788.	 Character as QTL - Seed sterility								
2717	qHDD-1-1(t)(qHDD1-1)	qHDD-1-1(t)(qHDD1-1)	heading date (QTL)-1-1(t)	heading date (QTL)-1-1(t)			1	This QTL controls heading date, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Reproductive organ - Heading date								
2718	qHDD-3-1(t)(qHDD3-1)	qHDD-3-1(t)(qHDD3-1)	heading date (QTL)-3-1(t)	heading date (QTL)-3-1(t)			3	This QTL controls heading date, being located on chromosome 3 flanked by markers RG104 and RG348.	 Reproductive organ - Heading date								
2719	qHDD-3-2(t)(qHDD3-2)	qHDD-3-2(t)(qHDD3-2)	heading date (QTL)-3-2(t)	heading date (QTL)-3-2(t)			3	This QTL controls heading date, being located on chromosome 3 flanked by markers RG348 and RM231.	 Reproductive organ - Heading date								
2720	qHDD-4-1(t)(qHDD4-1)	qHDD-4-1(t)(qHDD4-1)	heading date (QTL)-4-1(t)	heading date (QTL)-4-1(t)			4	This QTL controls heading date, being located on chromosome 4 flanked by markers RG190 and RG908.	 Reproductive organ - Heading date								
2721	qHDD-7-1(t)(qHDD7-1)	qHDD-7-1(t)(qHDD7-1)	heading date (QTL)-7-1(t)	heading date (QTL)-7-1(t)			7	This QTl controls heading date, being located on chromosome 7 flanked by markers RG477 and PGMS0.7.	 Reproductive organ - Heading date								
2722	qHDD-8-1(t)(qHDD8-1)	qHDD-8-1(t)(qHDD8-1)	heading date (QTL)-8-1(t)	heading date (QTL)-8-1(t)			8	This QTL controls heading date, being located on chromosome 8 flanked by markers AG8-Aro and A10K25.	 Reproductive organ - Heading date								
2723	qHDD-9-1(t)(qHDD9-1)	qHDD-9-1(t)(qHDD9-1)	heading date (QTL)-9-1(t)	heading date (QTL)-9-1(t)			9	This QTL controls heading date, being located on chromosome 9 flanked by markers RM257 and RZ228.	 Reproductive organ - Heading date								
2724	qHID-1-1(t) (qHID1-1)	qHID-1-1(t) (qHID1-1)	harvest index (QTL)-1-1(t)	harvest index (QTL)-1-1(t)			1	This QTL controls harvest index, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Character as QTL - Yield and productivity								
2725	qHID-1-2(t) (qHID1-2)	qHID-1-2(t) (qHID1-2)	harvest index (QTL)-1-2(t)	harvest index (QTL)-1-2(t)			1	This QTL controls harvest index, being located on chromosome 1 flanked by markers RZ801 and RG331.	 Character as QTL - Yield and productivity								
2726	qHID-3-1(t) (qHID3-1)	qHID-3-1(t) (qHID3-1)	harvest index (QTL)-3-1(t)	harvest index (QTL)-3-1(t)			3	This QTL controls harvest index, being located on chromosome 3 flanked by markers RZ574 and RZ284.	 Character as QTL - Yield and productivity								
2727	qHID-3-2(t) (qHID3-2)	qHID-3-2(t) (qHID3-2)	harvest index (QTL)-3-2(t)	harvest index (QTL)-3-2(t)			3	This QTL controls harvest index, being located on chromosome 3 flanked by markers RZ284 and pRD10A.	 Character as QTL - Yield and productivity								
2728	qHID-4-1(t) (qHID4-1)	qHID-4-1(t) (qHID4-1)	harvest index (QTL)-4-1(t)	harvest index (QTL)-4-1(t)			4	This QTL controls harvest index, being located on chromosome 4 flanked by markers RG190 and RG908.	 Character as QTL - Yield and productivity								
2729	qHID-4-2(t) (qHID4-2)	qHID-4-2(t) (qHID4-2)	harvest index (QTL)-4-2(t)	harvest index (QTL)-4-2(t)			4	This QTL controls harvest index, being located on chromosome 4 flanked by markers RG908 and RG91.	 Character as QTL - Yield and productivity								
2730	qHID-4-3(t) (qHID4-3)	qHID-4-3(t) (qHID4-3)	harvest index (QTL)-4-3(t)	harvest index (QTL)-4-3(t)			4	This QTL controls harvest index, being located on chromosome 4 flanked by markers RG91 and RG449.	 Character as QTL - Yield and productivity								
2731	qHID-7-1(t) (qHID7-1)	qHID-7-1(t) (qHID7-1)	harvest index (QTL)-7-1(t)	harvest index (QTL)-7-1(t)			7	This QTL controls harvest index, being located on chromosome 7 flanked by markers RG769 and RG511.	 Character as QTL - Yield and productivity								
2732	qHID-7-2(t) (qHID7-2)	qHID-7-2(t) (qHID7-2)	harvest index (QTL)-7-2(t)	harvest index (QTL)-7-2(t)			7	This QTL controls harvest index, being located on chromosome 7 flanked by markers PGMS0.7 and RM214.	 Character as QTL - Yield and productivity								
2733	qHID-8-1(t) (qHID8-1)	qHID-8-1(t) (qHID8-1)	harvest index (QTL)-8-1(t)	harvest index (QTL)-8-1(t)			8	This QTL controls harvest index, being located on chromosome 8 flanked by markers RG978 and RZ617.	 Character as QTL - Yield and productivity								
2734	qHID-8-2(t) (qHID8-2)	qHID-8-2(t) (qHID8-2)	harvest index (QTL)-8-2(t)	harvest index (QTL)-8-2(t)			8	This QTL controls harvest index, being located on chromosome 8 flanked by markers RZ617 and AG8-Aro.	 Character as QTL - Yield and productivity								
2735	qNOP-1-1(t) (qNOP1-1)	qNOP-1-1(t) (qNOP1-1)	number of panicles per plant (QTL)-1-1(t)	number of panicles per plant (QTL)-1-1(t)			1	This QTL controls number of panicles per plant, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Character as QTL - Yield and productivity								
2736	qNOP-3-1(t) (qNOP3-1)	qNOP-3-1(t) (qNOP3-1)	number of panicles per plant (QTL)-3-1(t)	number of panicles per plant (QTL)-3-1(t)			3	This QTL controls number of panicles per plant, being located on chromosome 3 flanked by markers CDO87 and RG910.	 Character as QTL - Yield and productivity								
2737	qNOP-4-1(t) (qNOP4-1)	qNOP-4-1(t) (qNOP4-1)	number of panicles per plant (QTL)-4-1(t)	number of panicles per plant (QTL)-4-1(t)			4	This QTL controls number of panicles per plant, being located on chromosome 4 flanked by markers RZ675 and RM241.	 Character as QTL - Yield and productivity								
2738	qNOP-4-2(t) (qNOP4-2)	qNOP-4-2(t) (qNOP4-2)	number of panicles per plant (QTL)-4-2(t)	number of panicles per plant (QTL)-4-2(t)			4	This QTL controls number of panicles per plant, being located on chromosome 4 flanked by markers RG163 and RG214.	 Character as QTL - Yield and productivity								
2739	qNOP-12-1(t) (qNOP12-1)	qNOP-12-1(t) (qNOP12-1)	number of panicles per plant (QTL)-12-1(t)	number of panicles per plant (QTL)-12-1(t)			12	This QTL controls number of panicles per plant, being located on chromosome 12 flanked by RG901 and RG958.	 Character as QTL - Yield and productivity								
2740	qNOP-12-2(t) (qNOP12-2)	qNOP-12-2(t) (qNOP12-2)	number of panicles per plant (QTL)-12-2(t)	number of panicles per plant (QTL)-12-2(t)			12	This QTL controls number of panicles per plant, being located on chromosome 12 flanked by markers RM235 and RG181.	 Character as QTL - Yield and productivity								
2741	qNOS-1-1(t)(qNOS1-1)	qNOS-1-1(t)(qNOS1-1)	number of spikelets per panicle (QTL)-1-1(t)	number of spikelets per panicle (QTL)-1-1(t)			1	This QTL controls number of spikelets per panicle, being located on chromosome 1 flanked by markers RM84 and RM220.	 Reproductive organ - Inflorescence								
2742	qNOS-4-1(t)(qNOS4-1)	qNOS-4-1(t)(qNOS4-1)	number of spikelets per panicle (QTL)-4-1(t)	number of spikelets per panicle (QTL)-4-1(t)			4	This QTL controls number of spikelets per panicle, being located on chromosome 4 flanked by markers RG449 and RG788.	 Reproductive organ - Inflorescence								
2743	qNOS-4-2(t)(qNOS4-2)	qNOS-4-2(t)(qNOS4-2)	number of spikelets per panicle (QTL)-4-2(t)	number of spikelets per panicle (QTL)-4-2(t)			4	This QTL controls number of spikelets per panicle, being located on chromosome 4 flanked by markers RG788 and RZ565.	 Reproductive organ - Inflorescence								
2744	qNOS-4-3(t)(qNOS4-3)	qNOS-4-3(t)(qNOS4-3)	number of spikelets per panicle (QTL)-4-3(t)	number of spikelets per panicle (QTL)-4-3(t)			4	This QTL controls number of spikelets per panicle, being located on chromosome 4 flanked by markers RG163 and RG214.	 Reproductive organ - Inflorescence								
2745	qNOS-4-4(t)(qNOS4-4)	qNOS-4-4(t)(qNOS4-4)	number of spikelets per panicle (QTL)-4-4(t)	number of spikelets per panicle (QTL)-4-4(t)			4	This QTL controls number of spikelets per panicle, being located on chromosome 4 flanked by markers RG214 and RZ590.	 Reproductive organ - Inflorescence								
2746	qNOS-7-1(t)(qNOS7-1)	qNOS-7-1(t)(qNOS7-1)	number of spikelets per panicle (QTL)-7-1(t)	number of spikelets per panicle (QTL)-7-1(t)			7	This QTL controls number of spikelets per panicle, being located on chromosome 7 flanked by markers RM70 and Est-9.	 Reproductive organ - Inflorescence								
2747	qPEN-1-1(t)(qPEN1-1)	qPEN-1-1(t)(qPEN1-1)	panicle exertion (QTL)-1-1(t)	panicle exertion (QTL)-1-1(t)			1	This QTL controls panicle exertion, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Reproductive organ - Inflorescence								
2748	qPEN-4-1(t)(qPEN4-1)	qPEN-4-1(t)(qPEN4-1)	panicle exertion (QTL)-4-1(t)	panicle exertion (QTL)-4-1(t)			4	This QTL controls panicle exertion, being located on chromosome 4 flanked by markers RG190 and RG908.	 Reproductive organ - Inflorescence								
2749	qPEN-8-1(t)(qPEN8-1)	qPEN-8-1(t)(qPEN8-1)	panicle exertion (QTL)-8-1(t)	panicle exertion (QTL)-8-1(t)			8	This QTL controls panicle exertion, being located on chromosome 8 flanked by markers CDO99 and Amp-2.	 Reproductive organ - Inflorescence								
2750	qPH-1-4(t) (qPHT1-1)	qPH-1-4(t) (qPHT1-1)	plant height (QTL)-1-4(t)	plant height (QTL)-1-4(t)			1	This QTL controls plant height, being located on chromosome 1 flanked by markers RZ730 and RG810. Same to sd-1?	 Character as QTL - Plant growth activity								
2751	qPH-3-5(t) (qPHT3-1)	qPH-3-5(t) (qPHT3-1)	plant height (QTL)-3-5(t)	plant height (QTL)-3-5(t)			3	This QTL controls plant height, being located on chromosome 3 flanked by markers RZ574 and RZ284.	 Character as QTL - Plant growth activity								
2752	qPH-3-6(t) (qPHT3-2)	qPH-3-6(t) (qPHT3-2)	plant height (QTL)-3-6(t)	plant height (QTL)-3-6(t)			3	This QTL controls plant height, being located on chromosome 3 flanked by markers RZ284 and pRD10A.	 Character as QTL - Plant growth activity								
2753	qPH-7-2(t) (qPHT7-1)	qPH-7-2(t) (qPHT7-1)	plant height (QTL)-7-2(t)	plant height (QTL)-7-2(t)			7	This QTl controls plant height, being located on chromosome 7 flanked by markers RG769 and RG511.	 Character as QTL - Plant growth activity								
2754	qPL-1-2(t) (qPLT1-1)	qPL-1-2(t) (qPLT1-1)	panicle length (QTL)-1-2(t)	panicle length (QTL)-1-2(t)			1	This QTL controls panicle length, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Reproductive organ - Inflorescence								
2755	qPL-3-1(t) (qPLT3-1)	qPL-3-1(t) (qPLT3-1)	panicle length (QTL)-3-1(t)	panicle length (QTL)-3-1(t)			3	This QTL controls panicle length, being located on chromosome 3 flanked by markers RM218 and RM232.	 Reproductive organ - Inflorescence								
2756	qPL-3-2(t) (qPLT3-2)	qPL-3-2(t) (qPLT3-2)	panicle length (QTL)-3-2(t)	panicle length (QTL)-3-2(t)			3	This QTL controls panicle length, being located on chromosome 3 flanked by markers RZ574 and RZ284.	 Reproductive organ - Inflorescence								
2757	qPL-3-3(t) (qPLT3-3)	qPL-3-3(t) (qPLT3-3)	panicle length (QTL)-3-3(t)	panicle length (QTL)-3-3(t)			3	This QTL controls panicle length, being located on chromosome 3 flanked by markers RG910 and RG418A.	 Reproductive organ - Inflorescence								
2758	qPL-4-2(t) (qPLT4-1)	qPL-4-2(t) (qPLT4-1)	panicle length (QTL)-4-2(t)	panicle length (QTL)-4-2(t)			4	This QTL controls panicle length, being located on chromosome 4 flanked by markers RG163 and RG214.	 Reproductive organ - Inflorescence								
2759	qPL-6-1(t) (qPLT6-1)	qPL-6-1(t) (qPLT6-1)	panicle length (QTL)-6-1(t)	panicle length (QTL)-6-1(t)			6	This QTL controls panicle length, being located on chromosome 6 flanked by markers RG433 and Cat-1.	 Reproductive organ - Inflorescence								
2760	qPL-7-1(t) (qPLT7-1)	qPL-7-1(t) (qPLT7-1)	panicle length (QTL)-7-1(t)	panicle length (QTL)-7-1(t)			7	This QTL controls panicle length, being located on chromosome 7 flanked by markers RG769 and RG511.	 Reproductive organ - Inflorescence								
2761	qPL-10-3(t) (qPLT10-1)	qPL-10-3(t) (qPLT10-1)	panicle length (QTL)-10-3(t)	panicle length (QTL)-10-3(t)			10	This QTL controls panicle length, being located on chromosome 10 flanked by markers RG257 and RG241.	 Reproductive organ - Inflorescence								
2762	qTGWT-1-4(t) (qTGW1-1)	qTGWT-1-4(t) (qTGW1-1)	1000 grain weight (QTL)-1-4(t)	1000 grain weight (QTL)-1-4(t)			1	This QTL controls 1000 grain weight, being located on chromosome 1 flanked by markers RG690 and RM212.	 Character as QTL - Yield and productivity								
2763	qTGWT-1-5(t) (qTGW1-2)	qTGWT-1-5(t) (qTGW1-2)	1000 grain weight (QTL)-1-5(t)	1000 grain weight (QTL)-1-5(t)			1	This QTL controls 1000 grain weight, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Character as QTL - Yield and productivity								
2764	qTGWT-1-6(t) (qTGW1-3)	qTGWT-1-6(t) (qTGW1-3)	1000 grain weight (QTL)-1-6(t)	1000 grain weight (QTL)-1-6(t)			1	This QTL controls 1000 grain weight, being located on chromosome 1 flanked by markers RZ801 and RG331.	 Character as QTL - Yield and productivity								
2765	qTGWT-3-3(t) (qTGW3-1)	qTGWT-3-3(t) (qTGW3-1)	1000 grain weight (QTL)-3-3(t)	1000 grain weight (QTL)-3-3(t)			3	This QTL controls 1000 grain weight, being located on chromosome 3 flanked by markers RZ574 and RZ284.	 Character as QTL - Yield and productivity								
2766	qTGWT-3-4(t) (qTGW3-2)	qTGWT-3-4(t) (qTGW3-2)	1000 grain weight (QTL)-3-4(t)	1000 grain weight (QTL)-3-4(t)			3	This QTL controls 1000 grain weight, being located on chromosome 3 flanked by markers RM55 and RM49.	 Character as QTL - Yield and productivity								
2767	qTGWT-3-5(t) (qTGW3-3)	qTGWT-3-5(t) (qTGW3-3)	1000 grain weight (QTL)-3-5(t)	1000 grain weight (QTL)-3-5(t)			3	This QTL controls 1000 grain weight, being located on chromosome 3 flanked by markers RM49 and CDO337.	 Character as QTL - Yield and productivity								
2768	qTGWT-6-2(t) (qTGW6-1)	qTGWT-6-2(t) (qTGW6-1)	1000 grain weight (QTL)-6-2(t)	1000 grain weight (QTL)-6-2(t)			6	This QTL controls 1000 grain weight, being located on chromosome 6 flanked by markers RG433 and Cat-1.	 Character as QTL - Yield and productivity								
2769	qTGWT-10-2(t) (qTGW10-1)	qTGWT-10-2(t) (qTGW10-1)	1000 grain weight (QTL)-10-2(t)	1000 grain weight (QTL)-10-2(t)			10	This QTL controls 1000 grain weight, being located on chromosome 10 flanked by markers RM258 and G2155.	 Character as QTL - Yield and productivity								
2770	qTGWT-10-3(t) (qTGW10-2)	qTGWT-10-3(t) (qTGW10-2)	1000 grain weight (QTL)-10-3(t)	1000 grain weight (QTL)-10-3(t)			10	This QTL controls 1000 grain weight, being located on chromosome 10 flanked by markers G2155 and RG134.	 Character as QTL - Yield and productivity								
2771	qTGWT-10-4(t) (qTGW10-3)	qTGWT-10-4(t) (qTGW10-3)	1000 grain weight (QTL)-10-4(t)	1000 grain weight (QTL)-10-4(t)			10	This QTL controls 1000 grain weight, being located on chromosome 10 flanked by markers RG134 and RZ500.	 Character as QTL - Yield and productivity								
2772	HSA-1_OG	Hsa-1_og, Hsa-1Og, Hsa-1(Og)	CYST NEMATODE (HETERODERA SACCHARI) RESISTANCE	cyst nematode (Heterodera sacchari) resistance			11	Resistant to nematode (Heterodera sacchari).It is located on chromosome 11 flanked by markers RM206 and RM254. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0061374				TO:0000384 - nematode damage resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2773	TMS5	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30	THERMOSENSITIVE MALE STERILITY 5	thermosensitive male sterility5, NAC domain-containing protein 18, NAC domain-containing protein 023, NAC domain-containing protein 23, endosperm-specific gene 30	NAC DOMAIN-CONTAINING PROTEIN 23		2	Thermo-sensitive genic male-sterility gene, being located on chromosome 2 flanked by STS marker C365-1 and CAPs marker G227-1. ONAC023, a member of the NAC (NAM-ATAFCUC-related) gene family, was identified as the candidate of the tms5 gene (Yang et al. 2007). LOC_Os02g12310.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Character as QTL - Yield and productivity,  Other	Os02g0214500	LOC_Os02g12310.1				GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus	TO:0000396 - grain yield, TO:0000455 - seed set percent, TO:0000449 - grain yield per plant, TO:0000207 - plant height, TO:0000067 - genic male sterility-thermo sensitive	
2774	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33	PYRICULARIA ORYZAE RESISTANCE 33	Pyricularia oryzae resistance-33(t), Magnaporthe grisea resistance 33, Blast resistance 33			8	Pi33 was located on chromosome 8 in a 1.6cM interval between markers RM72 and Y2643L (Bohnert et al. 2004). Original line is IR64, Bala (Indica). It was shown that, in the elite rice variety IR64, the resistance conferring allele of the rice blast resistance gene Pi33 was introgressed from the wild rice Oryza rufipogon (accession IRGC101508). The Pi33 locus was previously mapped to a 240 kb region between markers RMSPi33-53 and RM3507. In Nipponbare, nine candidate genes (three NBS-LRR and six LRR-kinase) were identified in this genomic region: (LOC_Os08g10250, LOC_Os08g10260, LOC_Os08g10290, LOC_Os08g10300, LOC_Os08g10310, LOC_Os08g10320, LOC_Os08g10330, LOC_Os08g10430 and LOC_Os08g10440) (Ballini et al. 2007). The Pi33 gene is located at a position of 3,306-3,309 Mbp inside the LOC_Os08g32600 (Os08g0421800) locus. (Utami et al. 2011).	 Tolerance and resistance - Disease resistance					45.4	GO:0009620 - response to fungus		
2775	qHD8(t)	Hd8(t)	heading date (QTL)-8(t)	heading date (QTL)-8(t)			3	Hd8 is located on chromosome 3 being tightly linked with seed dormancy gene Sdr1.	 Reproductive organ - Heading date			GR:0061442			GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading	
2776	qDTH-2-4(t)(dth2.1)	qDTH-2-4(t)(dth2.1)	days to heading (QTL)-2-4(t)	days to heading (QTL)-2-4(t)			2	This QTL controls days to heading, being located on chromosome 2 closely associated by a marker RM211.	 Reproductive organ - Heading date								
2777	qDTH-2-5(t)(dth2.2)	qDTH-2-5(t)(dth2.2)	days to heading (QTL)-2-5(t)	days to heading (QTL)-2-5(t)			2	This QTL controls days to heading, being located on chromosome 2 closely associated by marker RM266.	 Reproductive organ - Heading date								
2778	qDTH-7-2	qDTH-7-2, qDTH-7-2(t)(dth7.1)	days to heading (QTL)-7-2	days to heading (QTL)-7-2			7	This QTL controls days to heading, being located on chromosome 2 closely associated by marker RM125.	 Reproductive organ - Heading date								
2779	qDTH-7-3(t)(dth7.2)	qDTH-7-3(t)(dth7.2)	days to heading (QTL)-7-3(t)	days to heading (QTL)-7-3(t)			7	This QTL controls days to heading, being located on chromosome 7 closely associated by marker RM234.	 Reproductive organ - Heading date								
2780	qDTH-11-3(t)(dth11.1)	qDTH-11-3(t)(dth11.1)	days to heading (QTL)-11-3(t)	days to heading (QTL)-11-3(t)			11	This QTL controls days to heading, being located on chromosome 11 closely associated by marker RM202.	 Reproductive organ - Heading date								
2781	qDTH-12-2(t)(dth12.1)	qDTH-12-2(t)(dth12.1)	days to heading (QTL)-12-2(t)	days to heading (QTL)-12-2(t)			12	This QTL controls days to heading, being located on chromosome 12 closely associated by RM270.	 Reproductive organ - Heading date								
2782	qDTM-4-1(t) (dtm4.1)	qDTM-4-1(t) (dtm4.1)	days to maturity (QTL)-4-1(t)	days to maturity (QTL)-4-1(t)			4	This QTL controls days to maturity, being located on chromosome 4 closely associated by marker RM627.	 Character as QTL - Yield and productivity								
2783	qDTM-4-2(t) (dtm4.2)	qDTM-4-2(t) (dtm4.2)	days to maturity (QTL)-4-2(t)	days to maturity (QTL)-4-2(t)			4	This QTL controls days to maturity, being located on chromosome 4 closely associated by marker RG788.	 Character as QTL - Yield and productivity								
2784	qDTM-7-1(t) (dtm7.1)	qDTM-7-1(t) (dtm7.1)	days to maturity (QTL)-7-1(t)	days to maturity (QTL)-7-1(t)			7	This QTL controls days to maturity, being located on chromosome 7 closely associated by marker RM234.	 Character as QTL - Yield and productivity								
2785	qDTM-8-1(t) (dtm8.1)	qDTM-8-1(t) (dtm8.1)	days to maturity (QTL)-8-1(t)	days to maturity (QTL)-8-1(t)			8	This QTL controls days to maturity, being located on chromosome 8 closely associated by marker RG20.	 Character as QTL - Yield and productivity								
2786	qPH-4-3(t) (ph4.1)	qPH-4-3(t) (ph4.1)	plant height (QTL)-4-3(t)	plant height (QTL)-4-3(t)			4	This QTL controls plant height, being located on chromosome 4 flanked by markers RM307 and RM185.	 Vegetative organ - Culm								
2787	qPH-5-3(t) (ph5.1)	qPH-5-3(t) (ph5.1)	plant height (QTL)-5-3(t)	plant height (QTL)-5-3(t)			5	This QTL controls plant height, being located on chromosome 5 flanked by markers RM178 and RM334.	 Vegetative organ - Culm								
2788	qPH-8-2(t) (ph8.1)	qPH-8-2(t) (ph8.1)	plant height (QTL)-8-2(t)	plant height (QTL)-8-2(t)			8	This QTL controls plant height, being located on chromosome 8 flanked by markers RM210 and RM308.	 Vegetative organ - Culm								
2789	qPH-12-1(t) (ph12.1)	qPH-12-1(t) (ph12.1)	plant height (QTL)-12-1(t)	plant height (QTL)-12-1(t)			12	This QTL controls plant height, being located on chromosome 12 closely associated by marker RG901.	 Vegetative organ - Culm								
2790	qPH-1-5(t) (ph1.1)	qPH-1-5(t) (ph1.1)	plant height (QTL)-1-5(t)	plant height (QTL)-1-5(t)			1	This QTL controls plant height, being located on chromosome 1 closely associated by marker RM315.	 Vegetative organ - Culm								
2791	qPH-4-4(t) (ph4.1)	qPH-4-4(t) (ph4.1)	plant height (QTL)-4-4(t)	plant height (QTL)-4-4(t)			4	This QTL controls plant height, being located on chromosome 4 closely associated by marker RM518 or RM627.	 Vegetative organ - Culm								
2792	qPH-6-2(t) (ph6.1)	qPH-6-2(t) (ph6.1)	plant height (QTL)-6-2(t)	plant height (QTL)-6-2(t)			6	This QTL controls plant height, being located on chromosome 6 closely associated by marker RM540.	 Vegetative organ - Culm								
2793	qPH-10-1(t) (ph10.1)	qPH-10-1(t) (ph10.1)	plant height (QTL)-10-1(t)	plant height (QTL)-10-1(t)			10	This QTL controls plant height, being located on chromosome 10 closely associated by marker RM474.	 Vegetative organ - Culm								
2794	qPH-11-2(t) (ph11.1)	qPH-11-2(t) (ph11.1)	plant height (QTL)-11-2(t)	plant height (QTL)-11-2(t)			11	This QTL controls plant height, being located on chromosome 11 closely associated by RM286.	 Vegetative organ - Culm								
2795	qPL-1-3(t) (pl1.1)	qPL-1-3(t) (pl1.1)	panicle length (QTL)-1-3(t)	panicle length (QTL)-1-3(t)			1	This QTL controls panicle length, being located on chromosome 1 alosely associated by marker RM315 or RM265.	 Reproductive organ - Inflorescence								
2796	qPL-3-4(t) (pl3.1)	qPL-3-4(t) (pl3.1)	panicle length (QTL)-3-4(t)	panicle length (QTL)-3-4(t)			3	This QTL controls panicle length, being located on chromosome 3 closely associated by marker RZ672.	 Reproductive organ - Inflorescence								
2797	qPL-9-2(t) (pl9.1)	qPL-9-2(t) (pl9.1)	panicle length (QTL)-9-2(t)	panicle length (QTL)-9-2(t)			9	This QTL controls panicle length, being located on chromosome 9 closely associated by marker RM215.	 Reproductive organ - Inflorescence								
2798	qPL-10-4(t) (pl10.1)	qPL-10-4(t) (pl10.1)	panicle length (QTL)-10-4(t)	panicle length (QTL)-10-4(t)			10	This QTL controls panicle length, being located on chromosome 10 closely associated by marker RM474.	 Reproductive organ - Inflorescence								
2799	qPL-10-5(t) (pl10.2)	qPL-10-5(t) (pl10.2)	panicle length (QTL)-10-5(t)	panicle length (QTL)-10-5(t)			10	This QTL controls panicle length, being located on chromosome 10 closely associated by marker RM496.	 Reproductive organ - Inflorescence								
2800	qPPL-1-1(t) (ppl1.1)	qPPL-1-1(t) (ppl1.1)	panicles per plant (QTL)-1-1(t)	panicles per plant (QTL)-1-1(t)			1	This QTL cntrols panicle number per plant, being located on chromosome 1 closely associated by marker RM431 or RM315.	 Character as QTL - Yield and productivity								
2801	qPPL-1-2(t) (ppl1.2)	qPPL-1-2(t) (ppl1.2)	panicles per plant (QTL)-1-2(t)	panicles per plant (QTL)-1-2(t)			1	This QTL controls panicle number per plant, being located on chromosome 1 closely associated by marker RG331.	 Character as QTL - Yield and productivity								
2802	qPPL-2-1(t) (ppl2.1)	qPPL-2-1(t) (ppl2.1)	panicles per plant (QTL)-2-1(t)	panicles per plant (QTL)-2-1(t)			2	This QTL controls panicle number per plant, being located on chromosome 2 closely associated by marker RM424.	 Character as QTL - Yield and productivity								
2803	qPPL-11-1(t) (ppl11.1)	qPPL-11-1(t) (ppl11.1)	panicles per plant (QTL)-11-1(t)	panicles per plant (QTL)-11-1(t)			11	This QTL controls panicle number per plant, being located on chromosome 11 closely associated by marker RM202.	 Character as QTL - Yield and productivity								
2804	qPPL-11-2(t) (ppl11.2)	qPPL-11-2(t) (ppl11.2)	panicles per plant (QTL)-12-2(t)	panicles per plant (QTL)-12-2(t)			11	This QTL controls panicle number per plant, being located on chromosome 11 closely associated by marker RM254.	 Character as QTL - Yield and productivity								
2805	qGPP-2-2(t) (gpp2.1)	qGPP-2-2(t) (gpp2.1)	grains per panicle (QTL)-2-2(t)	grains per panicle (QTL)-2-2(t)			2	This QTL controls grain number per panicle, being located on chromosome 2 closely associated by marker RM202.	 Character as QTL - Yield and productivity								
2806	qGPP-3-2(t) (gpp3.1)	qGPP-3-2(t) (gpp3.1)	grains per panicle (QTL)-3-2(t)	grains per panicle (QTL)-3-2(t)			3	This QTL controls grain number per panicle, being located on chromosome 3 closely associated by marker RM282.	 Character as QTL - Yield and productivity								
2807	qSPP-3-2(t)(spp3.1)	qSPP-3-2(t)(spp3.1)	spikelets per panicle (QTL)-3-2(t)	spikelets per panicle (QTL)-3-2(t)			3	This QTL controls spikelet number per panicle, being located on chromosome 3 closely associated by marker RM282.	 Reproductive organ - Inflorescence								
2808	qPSS-1-2(t) (pss1.1)	qPSS-1-2(t) (pss1.1)	percent seed set (QTL)-1-2(t)	percent seed set (QTL)-1-2(t)			1	This QTL controls percent seed set, being located on chromosome 1 closely associated by marker RM212.	 Character as QTL - Seed sterility								
2809	qPSS-2-1(t) (pss2.1)	qPSS-2-1(t) (pss2.1)	percent seed set (QTL)-2-1(t)	percent seed set (QTL)-2-1(t)			2	This QTL controls percent seed set, being located on chromosome 2 closely associated by marker RM266.	 Character as QTL - Seed sterility								
2810	qPSS-11-1(t) (pss11.1)	qPSS-11-1(t) (pss11.1)	percent seed set (QTL)-11-1(t)	percent seed set (QTL)-11-1(t)			11	This QTL controls percent seed set, being located on chromosome 11 closely associated by marker RM286.	 Character as QTL - Seed sterility								
2811	qGPL-1-1(t) (gpl1.1)	qGPL-1-1(t) (gpl1.1)	grains per plant (QTL)-1-1(t)	grains per plant (QTL)-1-1(t)			1	This QTL controls grain number per plant, being located on chromosome 1 closely associated by marker RM220.	 Character as QTL - Yield and productivity								
2812	qGPL-2-1(t) (gpl2.1)	qGPL-2-1(t) (gpl2.1)	grains per plant (QTL)-2-1(t)	grains per plant (QTL)-2-1(t)			2	This QTL controls grain number per plant, being located on chromosome 2 closely associated by marker RM6.	 Character as QTL - Yield and productivity								
2813	qGPL-12-1(t) (gpl12.1)	qGPL-12-1(t) (gpl12.1)	grains per plant (QTL)-12-1(t)	grains per plant (QTL)-12-1(t)			12	This QTL controls grain number per plant, being located on chromosome 12 closely associated by marker RG901.	 Character as QTL - Yield and productivity								
2814	qGW-1-2(t) (gw1.1)	qGW-1-2(t) (gw1.1)	grain weight (QTL)-1-2(t)	grain weight (QTL)-1-2(t)			1	This QTL controls 1000-grain weight, being located on chromosome 1 closely associated by marker RM431 or RM104.	 Character as QTL - Yield and productivity								
2815	qGW-2-2(t) (gw2.1)	qGW-2-2(t) (gw2.1)	grain weight (QTL)-2-2(t)	grain weight (QTL)-2-2(t)			2	This QTL controls 1000-grain weight, being located on chromosome 2 closely associated by marker RM266.	 Character as QTL - Yield and productivity								
2816	qGW-3-4(t) (gw3.1)	qGW-3-4(t) (gw3.1)	grain weight (QTL)-3-4(t)	grain weight (QTL)-3-4(t)			3	This QTL controls 1000-grain weight, being located on chromosome 3 closely associated by marker RZ448.	 Character as QTL - Yield and productivity								
2817	qGW-3-5(t) (gw3.2)	qGW-3-5(t) (gw3.2)	grain weight (QTL)-3-5(t)	grain weight (QTL)-3-5(t)			3	This QTL controls 1000-grain weight, being located on chromosome 3 closely associated by marker RM571.	 Character as QTL - Yield and productivity								
2818	qGW-7-2(t) (gw7.1)	qGW-7-2(t) (gw7.1)	grain weight (QTL)-7-2(t)	grain weight (QTL)-7-2(t)			7	This QTL controls 1000-grain weight, being located on chromosome 7 closely associated by marker RM125.	 Character as QTL - Yield and productivity								
2819	qYLD-1-1(t) (yld1.1)	qYLD-1-1(t) (yld1.1)	yield per plant (QTL)-1-1(t)	yield per plant (QTL)-1-1(t)			1	This QTL controls grain yield per plant, being located on chromosome 1 closely associated by marker RM220.	 Character as QTL - Yield and productivity								
2820	qYLD-1-2(t) (yld1.2)	qYLD-1-2(t) (yld1.2)	yield per plant (QTL)-1-2(t)	yield per plant (QTL)-1-2(t)			1	This QTL controls grain yield per plant, being located on chromosome 1 closely associated by marker RM626.	 Character as QTL - Yield and productivity								
2821	qYLD-2-2(t) (yld2.1)	qYLD-2-2(t) (yld2.1)	yield per plant (QTL)-2-2(t)	yield per plant (QTL)-2-2(t)			2	This QTL controls grain yield per plant, being located on chromosome 2 closely associated by marker RM208 or RM250.	 Character as QTL - Yield and productivity								
2822	qFRR-8-1(t)	qFRR-8-1(t)	filled/total rough rice ratio (QTL)-8-1(t)	filled/total rough rice ratio (QTL)-8-1(t)			8	This QTL controls ratio of filled grain to total rough rice, being located on chromosome 8 closely associated by marker CDO99.	 Character as QTL - Seed sterility								
2823	qGD-4-1(t) (GD)	qGD-4-1(t) (GD)	grain density (QTL)-4-1(t)	grain density (QTL)-4-1(t)			4	This QTL controls grain density (the weight of rough rice grain per liter), being located on chromosome 4 closely associated by marker RM471.	 Character as QTL - Grain quality								
2824	qGD-8-1(t) (GD)	qGD-8-1(t) (GD)	grain density (QTL)-8-1(t)	grain density (QTL)-8-1(t)			8	This QTL controls grain density (the weight of rough grain per liter), being located on chromosome 8 closely associated by marker RM210.	 Character as QTL - Grain quality								
2825	qDR-10-1(t) (DR)	qDR-10-1(t) (DR)	dehusked grain ratio (QTL)-10-1(t)	dehusked grain ratio (QTL)-10-1(t)			10	This QTL controls percentage of dehusked grain weight compared to rough rice weight, being locaed on chromosome 10 closely associated by marker RM474.	 Character as QTL - Grain quality								
2826	qGG-7-1(t) (GG)	qGG-7-1(t) (GG)	green rice percentage (QTL)-7-1(t)	green rice percentage (QTL)-7-1(t)			7	This QTL controls green rice percentage, being located on chromosome 7 closely associated by marker RM445.	 Character as QTL - Yield and productivity								
2827	qGG-12-1(t) (GG)	qGG-12-1(t) (GG)	green rice percentage (QTL)-12-1(t)	green rice percentage (QTL)-12-1(t)			12	This QTL controls green rice weight compared to rough rice weight, being located on chromosome 12 closely associated by marker RM270.	 Character as QTL - Yield and productivity								
2828	qDYG-7-1(t) (DYG)	qDYG-7-1(t) (DYG)	damaged-yellow grain (QTL)-7-1(t)	damaged-yellow grain (QTL)-7-1(t)			7	This QTL controls percentage of damaged-yellow rice grain, being located on chromosome 7 closely associated by RM125.	 Character as QTL - Grain quality								
2829	qDYG-9-1(t) (DYG)	qDYG-9-1(t) (DYG)	damaged-yellow grain (QTL)-9-1(t)	damaged-yellow grain (QTL)-9-1(t)			9	This QTL controls damaged-yellow grain percentage, being located on chromosome 9 closely associated by RM358.	 Character as QTL - Grain quality								
2830	qDYG-10-1(t) (DYG)	qDYG-10-1(t)  (DYG)	damaged-yellow grain (QTL)-10-1(t)	damaged-yellow grain (QTL)-10-1(t)			10	This QTL controls damaged-yellow grain percentage, being located on chromosome 10 closely associated by marker RM474.	 Character as QTL - Grain quality								
2831	qRG-7-1(t) (RG)	qRG-7-1(t) (RG)	red grain (QTL)-7-1(t)	red grain (QTL)-7-1(t)			7	This QTL controls red grain percentage, being located on chromosome 7 closely associated by marker RM125.	 Character as QTL - Grain quality								
2832	qRG-12-1(t) (RG)	qRG-12-1(t) (RG)	red grain (QTL)-12-1(t)	red grain (QTL)-12-1(t)			12	This QTL controls red grain percentage, being located on chromosome 12 closely associated by marker RG869.	 Character as QTL - Grain quality								
2833	qMR-10-1(t) (MR)	qMR-10-1(t) (MR)	milled rice grain (QTL)-10-1(t)	milled rice grain (QTL)-10-1(t)			10	This QTL controls milled rice grain percentage, being located on chromosome 10 closely associated by marker RM474.	 Character as QTL - Grain quality								
2834	qHR-1-1(t) (HR)	qHR-1-1(t) (HR)	head rice grain (QTL)-1-1(t)	head rice grain (QTL)-1-1(t)			1	This QTL controls head rice grain percentage, being located on chromosome 1 closely associated by marker RM431.	 Character as QTL - Yield and productivity								
2835	qHR-2-1(t) (HR)	qHR-2-1(t) (HR)	head rice grain (QTL)-2-1(t)	head rice grain (QTL)-2-1(t)			3	This QTL controls head rice grain percentage, being located on chromosome 2 closely associated by marker RM263.	 Character as QTL - Yield and productivity								
2836	qHR-5-1(t) (HR)	qHR-5-1(t) (HR)	head rice grain (QTL)-5-1(t)	head rice grain (QTL)-5-1(t)			5	This QTL controls head rice grain percentage, being located on chromosome 5 closely associated by marker RM178.	 Character as QTL - Yield and productivity								
2837	qBR-1-1(t) (BR)	qBR-1-1(t) (BR)	broken rice grain (QTL)-1-1(t)	broken rice grain (QTL)-1-1(t)			1	This QTL controls broken rice grain percentage, being located on chromosome 1 closely associated by marker RM23.	 Character as QTL - Grain quality								
2838	qBR-1-2(t) (BR)	qBR-1-2(t) (BR)	broken rice grain (QTL)-1-2(t)	broken rice grain (QTL)-1-2(t)			1	This QTL controls broken rice grain percentage, being located on chromosome 1 closely associated by marker RM265.	 Character as QTL - Grain quality								
2839	qBR-2-1(t) (BR)	qBR-2-1(t) (BR)	broken rice grain (QTL)-2-1(t)	broken rice grain (QTL)-2-1(t)			2	This QTL controls broken rice grain percentage, being located on chromosome 2 closely associated by marker RM263.	 Character as QTL - Grain quality								
2840	qBR-5-1(t) (BR)	qBR-5-1(t) (BR)	broken rice grain (QTL)-5-1(t)	broken rice grain (QTL)-5-1(t)			5	This QTL controls broken rice grain percentage, being located on chromosome 5 closely associated by marker RM178.	 Character as QTL - Grain quality								
2841	qCR-2-1(t) (CR)	qCR-2-1(t) (CR)	crushed rice grain (QTL)-2-1(t)	crushed rice grain (QTL)-2-1(t)			2	This QTL controls crushed rice grain percentage, being located on chromosome 2 closely associated by marker RM263.	 Character as QTL - Grain quality								
2842	qCR-3-1(t) (CR)	qCR-3-1(t) (CR)	crushed rice grain (QTL)-3-1(t)	crushed rice grain (QTL)-3-1(t)			3	This QTL controls crushed rice grain percentage, being located on chromosome 3 closely associated by marker RM251.	 Character as QTL - Grain quality								
2843	qAC-6-1(t) (AC)	qAC-6-1(t) (AC)	amylose content (QTL)-6-1(t)	amylose content (QTL)-6-1(t)			6	This QTL controls amylose content of rice grain, being located on chromosome 6 closely associated by marker RM170.	 Character as QTL - Grain quality								
2844	qGC-6-1(t) (GC)	qGC-6-1(t) (GC)	gel consistency (QTL)-6-1(t)	gel consistency (QTL)-6-1(t)			6	This QTL controls gel consistency of rice grain, being located on chromosome 6 closely associated by marker RM50.	 Seed - Physiological traits - Taste								
2845	SPL5-2(T)	spl5-2(t), spl5-2	SPOTTED LEAF5-2(T)	spotted leaf5-2(t), spotted leaf 5-2		spl5-1(t)		Recessive gene. Semi-dwarf. An allele of spl5 (spl5-1). Semi-dwarf. Small reddish-brown spots appear on leaf blade until 60 days after sowing. Resistant to rice blast and bacterial blight due to hypersensitivity to pathogens.	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic			GR:0061346			GO:0006952 - defense response	TO:0000207 - plant height, TO:0000063 - mimic response	
2846	SPL12	Spl12(t), Spl12*, Spl12	SPOTTED LEAF 12	Spotted leaf12(t), Spotted leaf-12, spotted leaf 12				Dominant gene. Dwarf. Small (<3mm in diameter) lesions of reddish-brown color, visible after 3-4 weeks after sowing. Due to cell death caused by hypersensitivity, this mutant is resistant to rice blast and bacterial blight diseases. PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic			GR:0061342			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000207 - plant height	PO:0000003 - whole plant , PO:0009011 - plant structure 
2847	SPL13	spl13(t), spl13*, spl13	SPOTTED LEAF 13	spotted leaf13(t), spotted leaf-13, spotted leaf 13				Recessive gene. Semi-dwarf. Small (<3mm in diameter), discrete brown lesions appear on the surface of leaf blade 10 weeks after sowing. Due to cell death caused by hypersensitivity  , this mutant is resistant to rice blast and bacterial blight deseases. PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic			GR:0061343			GO:0006952 - defense response	TO:0000207 - plant height, TO:0000063 - mimic response	PO:0000003 - whole plant , PO:0009011 - plant structure 
2848	SPL14	spl14(t), spl14*, spl14	SPOTTED LEAF 14	spotted leaf14(t), spotted leaf-14, spotted leaf 14				Recessive gene. Semi-dwarf. Medium sized (5-10mm), discrete, dark-brown lesions appear 10 weeks after sowing. Due to cell death of hypersensitivity, this mutant is resistant to rice blast and bacterial blight diseases. PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic			GR:0061344			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000207 - plant height	PO:0000003 - whole plant , PO:0009011 - plant structure 
2849	SPL15	Spl15(t), Spl15*, Spl15	SPOTTED LEAF 15	Spotted leaf15(t), Spotted leaf-15, Spotted leaf 15				Dominant gene. Dwarf. Medium sized (5-10mm), discrete, light brown lesions appear 3-4 weeks after sowing. Due to cell death caused by hypersensitivity, this mutant is resistant to rice blast and bacterial blight diseases. PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic			GR:0061345			GO:0006952 - defense response	TO:0000207 - plant height, TO:0000063 - mimic response	PO:0000003 - whole plant , PO:0009011 - plant structure 
2850	qAC-3-1(t) (qAC-3)	qAC-3-1(t) (qAC-3)	amylose content (QTL)-3-1(t)	amylose content (QTL)-3-1(t)			3	This QTL controls amylose content of rice grain, being located on chromosome 3 flanked by markers R1927 and R3226.	 Seed - Physiological traits - Storage substances								
2851	qAC-4-1(t) (qAC-4)	qAC-4-1(t) (qAC-4)	amylose content (QTL)-4-1(t)	amylose content (QTL)-4-1(t)			4	This QTL controls amylose content of rice grain, being located on chromosome 4 flanked by markers C1100 and R1783.	 Seed - Physiological traits - Storage substances								
2852	qAC-5-2(t) (qAC-5)	qAC-5-2(t) (qAC-5)	amylose content (QTL)-5-2(t)	amylose content (QTL)-5-2(t)			5	This QTL controls amylose content of rice grain, being located on chromosome 5 flanked by markers C624 and C128.	 Seed - Physiological traits - Storage substances								
2853	qAC-6-2(t) (qAC-6)	qAC-6-2(t) (qAC-6)	amylose content (QTL)-6-2(t)	amylose content (QTL)-6-2(t)			6	This QTL controls amylose content of rice grain, being located on chromosome 6 flanked by markers R2869 and R1962.	 Seed - Physiological traits - Storage substances								
2854	qASS-3-1(t) (qASS-3)	qASS-3-1(t) (qASS-3)	alkali spreading score (QTL)-3-1(t)	alkali spreading score (QTL)-3-1(t)			3	This QTL controls alkali spreading score of rice grain, being located on chromosome 3 flanked by markers C25 and C515.	 Seed - Physiological traits - Taste								
2855	qASS-6-2(t) (qASS-6a)	qASS-6-2(t) (qASS-6a)	alkali spreading score (QTL)-6-2(t)	alkali spreading score (QTL)-6-2(t)			6	This QTL controls alkali spreading score of rice grain, being located on chromosome 6 flanked by markers G200 and C1478.	 Seed - Physiological traits - Taste								
2856	qASS-6-3(t) (qASS-6b)	qASS-6-3(t) (qASS-6b)	alkali spreading score (QTL)-6-3(t)	alkali spreading score (QTL)-6-3(t)			6	This QTL controls alkali spreading score of rice grain, being located on chromosome 6 flanked by markers R2869 and R1962.	 Seed - Physiological traits - Taste								
2857	qGC-1-1(t) (qGC-1)	qGC-1-1(t) (qGC-1)	gel consistency (QTL)-1-1(t)	gel consistency (QTL)-1-1(t)			1	This QTL controls gel consistency of rice grain, being located on chromosome 1 flanked by markers C122 and R886.	 Seed - Physiological traits - Taste								
2858	qGC-2-2(t) (qGC-2a)	qGC-2-2(t) (qGC-2a)	gel consistency (QTL)-2-2(t)	gel consistency (QTL)-2-2(t)			2	This QTL controls gel consistency of rice grain, being located on chromosome 2 flanked by markers R712 and G227.	 Seed - Physiological traits - Taste								
2859	qGC-2-3(t) (qGC-2b)	qGC-2-3(t) (qGC-2b)	gel consistency (QTL)-2-3(t)	gel consistency (QTL)-2-3(t)			2	This QTL controls gel consistency of rice grain, being located on chromosome 2 flanked by markers G1314B and G132.	 Seed - Physiological traits - Taste								
2860	qGC-6-2(t) (qGC-6a)	qGC-6-2(t) (qGC-6a)	gel consistency (QTL)-6-2(t)	gel consistency (QTL)-6-2(t)			6	This QTL controls gel consistency of rice grain, being located on chromosome 6 flanked by markers L688 and G200	 Seed - Physiological traits - Taste								
2861	qGC-6-3(t) (qGC-6b)	qGC-6-3(t) (qGC-6b)	gel consistency (QTL)-6-3(t)	gel consistency (QTL)-6-3(t)			6	This QTL controls gel consistency of rice grain, being located on chromosome 6 flanked by markers C556 and R2071.	 Seed - Physiological traits - Taste								
2862	ROC1	Roc1(t), GL2-1	RICE OUTMOST CELL-SPECIFIC GENE 1	Rice outmost cell-specific gene 1(t), Rice outermost cell-specific gene-1, Homeobox-leucine zipper protein ROC1, Homeodomain transcription factor ROC1, HD-ZIP protein ROC1, Protein RICE OUTERMOST CELL-SPECIFIC 1, GLABRA 2-like homeobox protein 1	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC1		8	GL2-type homeobox gene. This gene is located on chromosome 8 at 84.2 cM map position. This gene is specifically expressed in the L1 protoderm, and therefore is a suitable marker for the epidermal layer. GLABRA2(Gl2)-type homeobox. Q6ZAR0. an ortholog of an Arabidopsis L1-specific gene ATML1.	 Other	Os08g0187500	LOC_Os08g08820.2, LOC_Os08g08820.1	GR:0061416			GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000492 - leaf shape, TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2863	ROC2	Roc2(t), Roc2, GL2-2	RICE OUTMOST CELL-SPECIFIC GENE 2	Rice outmost cell-specific gene 2(t), Rice outermost cell-specific gene-2, Homeobox-leucine zipper protein ROC2, Homeodomain transcription factor ROC2, HD-ZIP protein ROC2, Protein RICE OUTERMOST CELL-SPECIFIC 2, GLABRA 2-like homeobox protein 2	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC2		4	GL2-type of homeobox gene. This gene is located on chromosome 4 at 19.8 cM of map position. Gl2-type homeobox. Q0J9X2. PO:0009009; embryo ; PO:0009025; leaf.	 Other	Os04g0627000	LOC_Os04g53540.4, LOC_Os04g53540.3, LOC_Os04g53540.2, LOC_Os04g53540.1	GR:0061417			GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000492 - leaf shape, TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2864	ROC3	Roc3(t), Roc3, GL2-3	RICE OUTMOST CELL-SPECIFIC GENE 3	Rice outmost cell-specific gene 3(t), Rice outermost cell-specific gene-3, Homeobox-leucine zipper protein ROC3, Homeodomain transcription factor ROC3, HD-ZIP protein ROC3, Protein RICE OUTERMOST CELL-SPECIFIC 3, GLABR 2-like homeobox protein 3	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC3		10	A GL2-type of homeobox gene. This gene is located on chromosome 10 at 86.1 cM of map position. Gl2-type homeobox. A2ZAI7(indica). Q336P2(japonica). PO:0009009; embryo ; PO:0009025; leaf.	 Other	Os10g0575600	LOC_Os10g42490.2, LOC_Os10g42490.1	GR:0061418			GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding	TO:0000064 - embryo related trait, TO:0000492 - leaf shape	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2865	ROC4	Roc4(t), Roc4, GL2-4	RICE OUTMOST CELL-SPECIFIC GENE 4	Rice outmost cell-specific gene 4(t), Rice outermost cell-specific gene-4, Homeobox-leucine zipper protein ROC4, Homeodomain transcription factor ROC4, HD-ZIP protein ROC4, Protein RICE OUTERMOST CELL-SPECIFIC 4, GLABRA 2-like homeobox protein 4	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC4	roc4	4	LOC_Os04g48070. A GL2-type of homeobox gene. This gene is located on chromosome 4 at 38.2 cM map position. Gl2-type homeobox. Q7Y0V9. GO:1904278: positive regulation of wax biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0569100	LOC_Os04g48070.3, LOC_Os04g48070.2, LOC_Os04g48070.1	GR:0061419			GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0010025 - wax biosynthetic process, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding	TO:0000064 - embryo related trait, TO:0000492 - leaf shape, TO:0000276 - drought tolerance	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2866	ROC5	Roc5(t), Roc5, GL2-5, OsROC5	RICE OUTMOST CELL-SPECIFIC GENE 5	Rice outmost cell-specific gene 5(t), Rice outermost cell-specific gene-5, Homeobox-leucine zipper protein ROC5, Homeodomain transcription factor ROC5, HD-ZIP protein ROC5, Protein RICE OUTERMOST CELL-SPECIFIC 5, GLABRA 2-like homeobox protein 5, outcurved leaf1, Rice ooutmost cell-specific gene5	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC5	oul1	2	A GL2-type of homeobox gene. This gene is located on chromosome 2 at 44.5 cM of map position. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. homeodomain leucine zipper class IV gene. Q6EPF0. PO:0009009; embryo ; PO:0009025; leaf. AB101648.	 Vegetative organ - Leaf,  Other	Os02g0674800	LOC_Os02g45250.1	GR:0061420			GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding	TO:0000276 - drought tolerance, TO:0000492 - leaf shape, TO:0000064 - embryo related trait, TO:0000085 - leaf rolling	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2867	ADL2	adl2	ADAXIALIZED LEAF 2	adaxialized leaf-2				This plant is dwarf, its leaves are rilled in reverse direction (abaxial side becomes inside) and frequently twisted. In many traits, adl2 shows more modified phenotypes than adl1. PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Leaf			GR:0060015			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000492 - leaf shape	PO:0009025 - vascular leaf , PO:0009047 - stem 
2868	qUVR-1(t)	qUVR-1(t)	ultraviolet-B resistance (QTL)-1(t)	ultraviolet-B resistance (QTL)-1(t)			1	This QTL is resistant to ultraviolet-B radiation, being located  on chromosome 1 closely linked with  the markers C1370 and C122.	 Tolerance and resistance - Stress tolerance								
2869	qUVR-3(t)	qUVR-3(t)	ultraviolet-B resistance (QTL)-3(t)	ultraviolet-B resistance (QTL)-3(t)			3	This QTL is resistant to ultraviolet-B radiation, being located on chromosome 3 closely linked with C746.	 Tolerance and resistance - Stress tolerance								
2870	qUVR-10(t)	qUVR-10(t)	ultraviolet-B resistance (QTL)-10(t)	ultraviolet-B resistance (QTL)-10(t)			10	This QTL is resistant to ultraviolet-B radiation, being located on chromosome 10 closely linked with the marker R2174.	 Tolerance and resistance - Stress tolerance								
2871	GSTZ1	OsGSTZ1, GSTZ-1	ZETA GLUTATHIONE S-TRANSFERASE 1	glutathine S-transferase1, glutathine S-transferase 1, Glutathione S-transferase (GSTZ)-1, Glutathione S-transferase-1	ZETA GLUTATHIONE S-TRANSFERASE 1		12	This gene encodes glutathine S-transferase, which is  the enzyme in the catabolic pathway of tyrosine and phenylalanine. Located on the short arm of chromosome 12, being arranged tandemly with and in the upsteam of OsGSTZ2.The expressions of OsGSTZ1 and OsGSTZ2 are regulated differently in the cultured rice cells. AF309381.  one of the qCTS12 (a major QTL for seedling cold tolerance) candidate genes.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0210200	LOC_Os12g10720.3, LOC_Os12g10720.2, LOC_Os12g10720.1	GR:0061493			GO:0009409 - response to cold, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0004364 - glutathione transferase activity	TO:0000303 - cold tolerance	
2872	GSTZ2	OsGSTZ2, GSTZ-2	ZETA GLUTATHIONE S-TRANSFERASE 2	glutathione S-transferase2, glutathione S-transferase 2, Glutathione S-transferase (GSTZ)-2, Glutathione S-transferase-2, glutathione transferase Z2	ZETA GLUTATHIONE S-TRANSFERASE 2		12	LOC_Os12g10730. This gene encodes glutathione S-transferase, which is the enzyme in the catabolic pathway of tyrosine and phenylalanine. OsGSTZ2 is located on the short arm of chromosome 12, being arranged tandemly with and in the downstream of OsGSTZ1. AF402792.  one of the qCTS12 (a major QTL for seedling cold tolerance) candidate genes.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0210300	LOC_Os12g10730.2, LOC_Os12g10730.1	GR:0061494			GO:0004364 - glutathione transferase activity, GO:0009409 - response to cold, GO:0016740 - transferase activity, GO:0009072 - aromatic amino acid family metabolic process, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0005737 - cytoplasm	TO:0000303 - cold tolerance	
2873	qSDS-1(t)	qSDS-1(t)	survival days of seedlings (Salt tolerance) (QTL)-1(t)	survival days of seedlings (Salt tolerance) (QTL)-1(t)			1	This QTL controls survival days of seedlings in relation to salt tolerance, being located on chromosome 1 between markers C813 and C86.	 Tolerance and resistance - Stress tolerance								
2874	qSDS-6(t)	qSDS-6(t)	survival days of seedlings (Salt tolerance) (QTL)-6(t)	survival days of seedlings (Salt tolerance) (QTL)-6(t)			6	This QTL controls survival days of seedlings in relation to salt tolerance, being located on chromosome 6 between markers C214 and R2549.	 Tolerance and resistance - Stress tolerance								
2875	qSDS-7(t)	qSDS-7(t)	survival days of seedlings (Salt tolerance) (QTL)-7(t)	survival days of seedlings (Salt tolerance) (QTL)-7(t)			7	This QTL controls survival days of seedlings in relation to salt tolerance, being located on chromosome 7 between markers R2401 and L538T7.	 Tolerance and resistance - Stress tolerance								
2876	qSNC-7(t)	qSNC-7(t)	shoot Na+ concentration (QTL)-7(t)	shoot Na+ concentration (QTL)-7(t)			7	This QTl cntrols shoot Na+ concentration in relation to salt tolerance, being located on chromosome 7 between markers C1057 and R2401.	 Tolerance and resistance - Stress tolerance								
2877	qSNTQ-7(t)	qSNTQ-7(t)	shoot Na+ total quantity (QTL)-7(t)	shoot Na+ total quantity (QTL)-7(t)			7	This QTL controls shoot Na+ total quantity in relation to salt tolerance, being located on chromosome 7 between markers C1057 and R2401.	 Tolerance and resistance - Stress tolerance								
2879	qRNC-9(t)	qRNC-9(t)	root Na+ concentration (QTL)-9(t)	root Na+ concentration (QTL)-9(t)			9	This QTL controls root Na+ concentration in relation to salt tolerance, being located on chromosome 9 between markers R1751 and R2638.	 Tolerance and resistance - Stress tolerance								
2880	qRNTQ-1(t)	qRNTQ-1(t)	root Na+ total quantity (QTL)-1(t)	root Na+ total quantity (QTL)-1(t)			1	This QTL controls root Na+ total quantity in relation to salt tolerance, being located on chromosome 1 between markers C813 and C86.	 Tolerance and resistance - Stress tolerance								
2881	qRKC-4(t)	qRKC-4(t)	root K+ concentration (QTL)-4(t)	root K+ concentration (QTL)-4(t)			4	This QTL controls root K+ concentration in relation to salt tolerance, being located on chromosome 4 between markers C891 tn C513.	 Tolerance and resistance - Stress tolerance								
2882	qRKC-7(t)	qRKC-7(t)	root K+ concentration (QTL)-7(t)	root K+ concentration (QTL)-7(t)			7	This QTL controls root K+ concentration in relation to salt tolerance, being located on chromosome 7 between markers C1057 and R2401.	 Tolerance and resistance - Stress tolerance								
2883	qRKTQ-7(t)	qRKTQ-7(t)	root K+ total quantity (QTL)-7(t)	root K+ total quantity (QTL)-7(t)			7	This QTL controls root K+ total quantity in relation to salt tolerance, being located on chromosome 7 between markers C1057 and R2401.	 Tolerance and resistance - Stress tolerance								
2884	qRDGF-2-1(t) (rdgf2a)	qRDGF-2-1(t) (rdgf2a)	retention degree of greenness of the flag leaf (QTL)-2-1(t)	retention degree of greenness of the flag leaf (QTL)-2-1(t)			2	"This QTL controls retention degree of greenness of the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 2 flanked by markers RM29 and RM341."	 Character as QTL - Plant growth activity								
2885	qRDGF-2-2(t) (rdgf2b)	qRDGF-2-2(t) (rdgf2b)	retention degree of greenness of the flag leaf (QTL)-2-2(t)	retention degree of greenness of the flag leaf (QTL)-2-2(t)			2	"This QTL controls retention degree of greenness of the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 2 flanked by markers RM263 and RM221."	 Character as QTL - Plant growth activity								
2886	qRDGF-2-3(t) (rdgf2c)	qRDGF-2-3(t) (rdgf2c)	retention degree of greenness of the flag leaf (QTL)-2-3(t)	retention degree of greenness of the flag leaf (QTL)-2-3(t)			2	"This QTL controls retention degree of greenness in the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 2 flanked by markers RM6 and RM240."	 Character as QTL - Plant growth activity								
2887	qRDGF-3(t) (rdgf3)	qRDGF-3(t) (rdgf3)	retention degree of greenness of the flag leaf (QTL)-3(t)	retention degree of greenness of the flag leaf (QTL)-3(t)			3	"This QTL controls retention degree of greenness of the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 3 flanked by markers RM293 and RM143."	 Character as QTL - Plant growth activity								
2888	qRDGF-4(t) (rdgf4)	qRDGF-4(t) (rdgf4)	retention degree of greenness of the flag leaf (QTL)-4(t)	retention degree of greenness of the flag leaf (QTL)-4(t)			4	"This QTL controls retention degree of greenness of the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 4 flanked by markers MRG5943 and RM261."	 Character as QTL - Plant growth activity								
2889	qRDGF-8-1(t) (rdgf8a)	qRDGF-8-1(t) (rdgf8a)	retention degree of greenness of the flag leaf (QTL)-8-1(t)	retention degree of greenness of the flag leaf (QTL)-8-1(t)			8	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 8 flanked by markers RM126 and RM310."	 Character as QTL - Plant growth activity								
2890	qRDGF-9(t) (rdgf9)	qRDGF-9(t) (rdgf9)	retention degree of greenness of the flag leaf (QTL)-9(t)	retention degree of greenness of the flag leaf (QTL)-9(t)			9	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 9 flanked by markers MRG2533 and RM257."	 Character as QTL - Plant growth activity								
2891	qRDGF-6(t) (rdgf6)	qRDGF-6(t) (rdgf6)	retention degree of greenness of the flag leaf (QTL)-6(t)	retention degree of greenness of the flag leaf (QTL)-6(t)			6	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 6 flanked by markers RM275 and RM30."	 Character as QTL - Plant growth activity								
2892	qRDGF-7(t) (rdgf7)	qRDGF-7(t) (rdgf7)	retention degree of greenness of the flag leaf (QTL)-7(t)	retention degree of greenness of the flag leaf (QTL)-7(t)			7	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 7 flanked by markers RM82 and RM125."	 Character as QTL - Plant growth activity								
2893	qRDGF-8-2(t) (rdgf8b)	qRDGF-8-2(t) (rdgf8b)	retention degree of greenness of the flag leaf (QTL)-8-2(t)	retention degree of greenness of the flag leaf (QTL)-8-2(t)			8	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 8 flanked by markers RM331 and RM342A."	 Character as QTL - Plant growth activity								
2894	qRDGF-10(t) (rdgf10)	qRDGF-10(t) (rdgf10)	retention degree of greenness of the flag leaf (QTL)-10(t)	retention degree of greenness of the flag leaf (QTL)-10(t)			10	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 10 flanked by markers RM269b and RM304."	 Character as QTL - Plant growth activity								
2895	qRRGF-2(t) (rrgf2)	qRRGF-2(t) (rrgf2)	relative retention of greenness of the flag leaf (QTL)-2(t)	relative retention of greenness of the flag leaf (QTL)-2(t)			2	This trait stands the relative retension of greenness of flag leaf at 30 days after heading against that at heading day. This QTL is located on chromosome 2 flanked by markers RM263 and RM221.	 Character as QTL - Plant growth activity								
2896	qRRGF-10(t) (rrgf10)	qRRGF-10(t) (rrgf10)	relative retention of greenness of the flag leaf (QTL)-10(t)	relative retention of greenness of the flag leaf (QTL)-10(t)			10	This trait stands for the relative retention of greenness of the flag leaf at 30 days after heading to that at heading date. This QTL is located on chromosome 10 flanked by markers RM304 and RM147.	 Character as QTL - Plant growth activity								
2897	qRRGF-7(t) (rrgf7)	qRRGF-7(t) (rrgf7)	relative retention of greenness of the flag leaf (QTL)-7(t)	relative retention of greenness of the flag leaf (QTL)-7(t)			7	This trait stands for the relative greenness retentin of flag leaf at 30 days after heading against that ot heading date. This QTL is located on chromosome 7 flanked by markers RM2 and RM11.	 Character as QTL - Plant growth activity								
2898	qRRGF-12(t) (rrgf12)	qRRGF-12(t) (rrgf12)	relative retention of greenness of the flag leaf (QTL)-12(t)	relative retention of greenness of the flag leaf (QTL)-12(t)			12	This trait stands for the relative greenness retention of flag leaf at 30 days after heading against that at heading date. This QTL is located on chromosome 12 flanked by markers RM277 and RM309.	 Character as QTL - Plant growth activity								
2899	qRDGS-2-1(t) (rdgs2a)	qRDGS-2-1(t) (rdgs2a)	retention degree of greenness of the second leaf (QTL)-2-1(t)	retention degree of greenness of the second leaf (QTL)-2-1(t)			2	"This QTL controls retention degree of greenness of the second leaf (greenness at 30 days after heading) in relation to \"stay-green\" trait, being located on chromosome 2 flanked by markers RM263 and RM233A."	 Character as QTL - Plant growth activity								
2900	qRDGS-2-2(t) (rdgs2b)	qRDGS-2-2(t) (rdgs2b)	retention degree of greenness of the second leaf (QTL)-2-2(t)	retention degree of greenness of the second leaf (QTL)-2-2(t)			2	"This QTL controls retention degree of greenness of the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 2 flanked by markers RM29 and RM341."	 Character as QTL - Plant growth activity								
2901	qRDGS-6(t) (rdgs6)	qRDGS-6(t) (rdgs6)	retention degree of greenness of the second leaf (QTL)-6(t)	retention degree of greenness of the second leaf (QTL)-6(t)			6	"This QTL controls greenness of the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 6 flanked by markers RM275 and RM30."	 Character as QTL - Plant growth activity								
2902	qRDGS-8-1(t) (rdgs8a)	qRDGS-8-1(t) (rdgs8a)	retention degree of greenness of the second leaf (QTL)-8-1(t)	retention degree of greenness of the second leaf (QTL)-8-1(t)			8	"This QTL controls retention degree of greenness of the second leaf (greenness at 30 days after heading) in relation to \"stay-green\" trait, being located on chromosome 8 flanked by markers RM331 and RM342A."	 Character as QTL - Plant growth activity								
2903	qRDGS-8-2(t) (rdgs8b)	qRDGS-8-2(t) (rdgs8b)	retention degree of greenness of the second leaf (QTL)-8-2(t)	retention degree of greenness of the second leaf (QTL)-8-2(t)			8	"This QTL controls retention degree of greenness of the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 8 flanked by markers RM25 and RM126."	 Character as QTL - Plant growth activity								
2904	qRDGS-3-1(t) (rdgs3a)	qRDGS-3-1(t) (rdgs3a)	retention degree of greenness of the second leaf (QTL)-3-1(t)	retention degree of greenness of the second leaf (QTL)-3-1(t)			3	"This QTL controls retention degree of greenness of the second leaf (greenness measured at 30 days after heading) in relation to \"stay-green\" trait, being located on chromosome 3 flanked by markers RM282 and RM473A."	 Character as QTL - Plant growth activity								
2905	qRDGS-3-2(t) (rdgs3b)	qRDGS-3-2(t) (rdgs3b)	retention degree of greenness of the second leaf (QTL)-3-2(t)	retention degree of greenness of the second leaf (QTL)-3-2(t)			3	"This QTL controls retention degree of greenness of the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 3 flanked by markers RM293 and RM143."	 Character as QTL - Plant growth activity								
2906	qRDGS-7(t) (rdgs7)	qRDGS-7(t) (rdgs7)	retention degree of greenness of the second leaf (QTL)-7(t)	retention degree of greenness of the second leaf (QTL)-7(t)			7	"This QTL controls retention degree of greenness o the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 7 flanked by markers RM118 and RM248."	 Character as QTL - Plant growth activity								
2907	qRDGS-10(t) (rdgs10)	qRDGS-10(t) (rdgs10)	retention degree of greenness of the second leaf (QTL)-10(t)	retention degree of greenness of the second leaf (QTL)-10(t)			10	"This QTL controls retention degree of greenness of the second leaf at 30 days after heading in relatio to \"stay-green\" trait, being located on chromosome 10 flanked by markers RM147 and RM228."	 Character as QTL - Plant growth activity								
2908	qRRGS-2(t) (rrgs2)	qRRGS-2(t) (rrgs2)	relative retention of greenness of the second leaf (QTL)-2(t)	relative retention of greenness of the second leaf (QTL)-2(t)			2	"This trait stands for the relative retention of greenness of the second leaf at 30 days after heading against that of heading date in relation to \"stay-green\" trait. This QTL is located on chromosome 2 flanked by markers RM263 and RM221."	 Character as QTL - Plant growth activity								
2909	qRRGS-3(t) (rrgs3)	qRRGS-3(t) (rrgs3)	relative retention of greenness of the second leaf (QTL)-3(t)	relative retention of greenness of the second leaf (QTL)-3(t)			3	"This trait stands for the relative retention of greenness of the second leaf at 30 days after heading against that ao heading date in relation to \"saty-green\" trait. This QTL is located on chromosome 3 flanked by markers RM175 and RM36."	 Character as QTL - Plant growth activity								
2910	qRRGS-10(t) (rrgs10)	qRRGS-10(t) (rrgs10)	relative retention of greenness of the second leaf (QTL)-10(t)	relative retention of greenness of the second leaf (QTL)-10(t)			9	"This trait stand for the relative retention of greenness of the second leaf at 30 days after heading against that at heading date in relation to \"stay-green\" trait. This QTL is located on chromosome 10 flanked by markers RM222 and RM216."	 Character as QTL - Plant growth activity								
2911	qRRGS-7(t) (rrgs7)	qRRGS-7(t) (rrgs7)	relative retention of greenness of the second leaf (QTL)-7(t)	relative retention of greenness of the second leaf (QTL)-7(t)			7	"This trait stands for the relative greenness of the second leaf at 30 days after heading against that at heading date in relation to \"stay-green\" trait. This QTL is located on chromosome 7 flanked by markers RM11 and RM346."	 Character as QTL - Plant growth activity								
2912	qRRGS-6(t) (rrgs6)	qRRGS-6(t) (rrgs6)	relative retention of greenness of the second leaf (QTL)-6(t)	relative retention of greenness of the second leaf (QTL)-6(t)			6	"This trait stands for the relative greenness of second leaf at 30 days after heading against that at heading date in relation to \"stay-green\" trait. This QTL is located on chromosome 6 flanked by markers RM510 and RM314."	 Character as QTL - Plant growth activity								
2913	qRGAF-2-1(t) (rgaf2a)	qRGAF-2-1(t) (rgaf2a)	retention of the green area of the flag leaf (QTL)-2-1(t)	retention of the green area of the flag leaf (QTL)-2-1(t)			2	This trait stands for visual ranking of retained green area in the flag leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 2 flanked by markers RM145 and RM322.	 Character as QTL - Plant growth activity								
2914	qRGAF-2-2(t) (rgaf2b)	qRGAF-2-2(t) (rgaf2b)	retention of the green area of the flag leaf (QTL)-2-2(t)	retention of the green area of the flag leaf (QTL)-2-2(t)			2	This trait stands for visual ranking of retained green area in the flag leaf at 30 days after heading (1: nearly complete death, to 5: nearly complete green). This QTL is located on chromosome 2 flanked by markers RM108b and RM266.	 Character as QTL - Plant growth activity								
2915	qRGAF-4-1(t) (rgaf4a)	qRGAF-4-1(t) (rgaf4a)	retention of the green area of the flag leaf (QTL)-4-1(t)	retention of the green area of the flag leaf (QTL)-4-1(t)			4	This trait stands for visual ranking of retained  green area in the flag leaf at 30 days after heading (1: nearly complete death, to 5: nearly complete green). This QTL is located on chromosome 4 flanked by markers MRG5943 and RM261.	 Character as QTL - Plant growth activity								
2916	qRGAF-6-1(t) (rgaf6a)	qRGAF-6-1(t) (rgaf6a)	retention of the green area of the flag leaf (QTL)-6-1(t)	retention of the green area of the flag leaf (QTL)-6-1(t)			6	This trait stands for visual ranking of retained green area of flag leaf at 30 days after heading (1: nearly complete death, to 5: nearly complete green). This QTL is located on chromosome 6 flanked by markers RM150 and RM3.	 Character as QTL - Plant growth activity								
2917	qRGAF-7(t) (rgaf7)	qRGAF-7(t) (rgaf7)	retention of the green area of the flag leaf (QTL)-7(t)	retention of the green area of the flag leaf (QTL)-7(t)			7	This trait stands for visual ranking of retained green area in the flag leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 7 flanked by markers RM11 and RM346.	 Character as QTL - Plant growth activity								
2918	qRGAF-3(t) (rgaf3)	qRGAF-3(t) (rgaf3)	retention of the green area of the flag leaf (QTL)-3(t)	retention of the green area of the flag leaf (QTL)-3(t)			3	This trait stands for visual ranking of retained green area in the flag leaf 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 3 flanked by markers RM293 and RM143.	 Character as QTL - Plant growth activity								
2919	qRGAF-10(t) (rgaf10)	qRGAF-10(t) (rgaf10)	retention of the green area of the flag leaf (QTL)-10(t)	retention of the green area of the flag leaf (QTL)-10(t)			10	This trait stands for visual ranking of retained green area in the flag leaf 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is locate on chromosome 10 flanked by markers RM269b and RM304.	 Character as QTL - Plant growth activity								
2920	qRGAF-4-2(t) (rgaf4b)	qRGAF-4-2(t) (rgaf4b)	retention of the green area in the flag leaf (QTL)-4-2(t)	retention of the green area in the flag leaf (QTL)-4-2(t)			4	This trait stands for visual ranking of retained green area in the flag leaf 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 4 flanked by markers RM131 and RM280.	 Character as QTL - Plant growth activity								
2921	qRGAF-6-2(t) (rgaf6b)	qRGAF-6-2(t) (rgaf6b)	retention of the green area of the flag leaf (QTL)-6-2(t)	retention of the green area of the flag leaf (QTL)-6-2(t)			6	This trait stands for visual ranking of retained green area of flag leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 6 flanked by markers RM275 and RM30.	 Character as QTL - Plant growth activity								
2922	qRGAF-8(t) (rgaf8)	qRGAF-8(t) (rgaf8)	retention of the green area of the flag leaf (QTL)-8(t)	retention of the green area of the flag leaf (QTL)-8(t)			8	This trait stands for visual ranking of retained green area in the flag leaf 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 8 flanked by markers RM25 and RM126.	 Character as QTL - Plant growth activity								
2923	qRGAS-6-1(t) (rgas6a)	qRGAS-6-1(t) (rgas6a)	retention of the green area of the 2nd leaf (QTL)-6-1(t)	retention of the green area of the 2nd leaf (QTL)-6-1(t)			6	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 6 flanked by markers RM150 and RM3.	 Character as QTL - Plant growth activity								
2924	qRGAS-3(t) (rgas3)	qRGAS-3(t) (rgas3)	retention of the green area of the 2nd leaf (QTL)-3(t)	retention of the green area of the 2nd leaf (QTL)-3(t)			3	This trait stands for visual ranking of retained green area in the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 3 flanked by markers RM570 and RM85.	 Character as QTL - Plant growth activity								
2925	qRGAS-7-1(t) (rgas7a)	qRGAS-7-1(t) (rgas7a)	retention of the green area of the 2nd leaf (QTL)-7-1(t)	retention of the green area of the 2nd leaf (QTL)-7-1(t)			7	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 7 flanked by markers RM118 and RM248.	 Character as QTL - Plant growth activity								
2926	qRGAS-7-2(t) (rgas7b)	qRGAS-7-2(t) (rgas7b)	retention of the green area of the 2nd leaf (QTL)-7-2(t)	retention of the green area of the 2nd leaf (QTL)-7-2(t)			7	This trait stands for visual ranking of retaind green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 7 flanked by markers RM298 and RM82.	 Character as QTL - Plant growth activity								
2927	qRGAS-6-2(t) (rgas6b)	qRGAS-6-2(t) (rgas6b)	retention of the green area of the 2nd leaf (QTL)-6-2(t)	retention of the green area of the 2nd leaf (QTL)-6-2(t)			6	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 6 flanked by markers RM275 and RM30.	 Character as QTL - Plant growth activity								
2928	qRGAS-10(t) (rgas10)	qRGAS-10(t) (rgas10)	retention of the green area of the 2nd leaf (QTL)-10(t)	retention of the green area of the 2nd leaf (QTL)-10(t)			10	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 10 flanked by marker RM271 and RM269b.	 Character as QTL - Plant growth activity								
2929	qRGAS-11(t) (rgas11)	qRGAS-11(t) (rgas11)	retention of the green area of the 2nd leaf (QTL)-11(t)	retention of the green area of the 2nd leaf (QTL)-11(t)			11	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 11 flanked by markers RM286 and RM20B.	 Character as QTL - Plant growth activity								
2930	qLTG-3-1(t)	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5	low-temperature germianability (QTL)-3-1(t)	low-temperature germianability (QTL)-3-1(t), hybrid proline- or glycine-rich protein 5			3	This QTL controls low-temperature germinability, being located on chromosome 3 flanked by markers GBR3001 and GBR3002. AB369214, AB369215. AB510406, AB510407.  AB433790-AB433805 (O.sativa and other wild rice species). LOC_Os03g01320.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os03g0103300	LOC_Os03g01320.2, LOC_Os03g01320.1				GO:0009409 - response to cold, GO:0009845 - seed germination, GO:0050832 - defense response to fungus, GO:0009627 - systemic acquired resistance, GO:0009738 - abscisic acid mediated signaling	TO:0000303 - cold tolerance, TO:0000253 - seed dormancy, TO:0000615 - abscisic acid sensitivity	
2931	qLTG-3-2(t)	qLTG-3-2(t)	low-temperature germinability (QTL)-3-2(t)	low-temperature germinability (QTL)-3-2(t)			3	This QTL controls low-temperature germinability, being located on chromosome 3 flanked by markers RM3436 and RM2593.	 Tolerance and resistance - Stress tolerance								
2932	qLTG-4-3(t)	qLTG-4-3(t)	low-temperature germinability (QTL)-4-3(t)	low-temperature germinability (QTL)-4-3(t)			4	This QTL controls low-temperature germinability, being located on the distal end of short arm of chromosome 4 flanked by markers R1854 and G1184.	 Tolerance and resistance - Stress tolerance								
2933	XA27	Xa27(t), Xa27(t)*, Xa27	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 27	Xanthomonas oryzae pv. oryzae resistance 27, Xanthomonas campestris pv. oryzae resistance-27			6	Bacterial blight (Xanthomonas rryzae pv. oryzae (X00)) resistance gene introduced from Oryza minuta, being located on the long arm of chromosome 6 flanked by markers M1081 and M1095. PO:0009011; plant structure ; PO:0000003; whole plant. AY986491, AY986492, AY986493. JF304301-JF304303, HQ888852-HQ888857, JN016505-JN016521, JN601064 (O. sativa and other wild rice species).	 Tolerance and resistance - Disease resistance			GR:0061464			GO:0009617 - response to bacterium, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2936	PI34	Pi34, RMg71, Pi24(t)	PYRICULARIA ORYZAE RESISTANCE 34	Pyricularia oryzae resistance 34, Magnaporthe grisea resistance 34, Blast resistance 34			11	Partial resistance to rice blast in testing nursery under natural conditions. This gene was located on chromosome 11 flanked by RFLP markers E1126 and C1172. Original line is Chubu32(Japonica). Map position (79.1-91.4 cM). Pi24(t) in Zenbayashi et al. 2002, 2003 was renamed Pi34 (Zenbayashi et al. 2004).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
2937	WBPH6	Wbph6	WHITEBACKED PLANTHOPPER RESISTANCE 6	Whitebacked planthopper resistance6			11	Dominant gene for whitebacked planthopper resistance. This gene was located on chromosome 11 linked to a SSR marker RM167 with the genetic distance of 21.2cM.	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect		
2938	AN9	An9, An9(t)*	AWN 9	Awn9, Awn-9			1	Dominant gene, being located on chromosome 1 flanked by SSR markers RM8111 (3.0cM) and RM8051 (3.6cM). Under Taichung 65 background, homozygous An9 produces 5-30mm long awns mainly at the top of spikelets in panicle branches. PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061427			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2939	AN10	An10, An10*	AWN 10	Awn10, Awn-10			1	Dominant gene, being located on chromosome 1 flanked by SSR markers RM237 (15.1cM) and RM265 (3.0cM). Under Taichung 65 background, An10 produces awns shorter and sparcer awns than An9. PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061428			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2940	AN6	An6, An6(t), An6*	AWN 6	Awn6		An6-mer	8	Dominant gene, being located on the long arm of chromosome 8 linked with SSR marker RM3496 by 11.7cM. PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061426			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2941	AN6-MER	An6-mer	AWN 6-MER	Awn 6-mer		An6, An6-mer	8	A multiple allele at An6 locus, obtained from Oryza meridionalis. Under Taichung 65 background, homozygous An6-mer produces 2 to 4cm long awns.	 Reproductive organ - Spikelet, flower, glume, awn						GO:0007275 - multicellular organismal development		
2942	AN7-GLUM	An7-glum	AWN7-GLUM	Awn7-glum		An7	5	Dominant gene, an allele of An7, obtained from Australian wild rice O. glumaepatula.  This gene is located on chromosome 5 flanked by markers RM3419 (3.6cM) and RM289 (3.6cM).	 Reproductive organ - Spikelet, flower, glume, awn						GO:0007275 - multicellular organismal development		
2943	AN8-GLUM	An8-glum	AWN8-GLUM	Awn8-glum		An8	4	Dominant gene. An allele of An8, obtained from Australian wild rice O. glumaepatula. This gene is located on chromosome 4 flanked by markers RM261 (12.2cM) and RM1359 (7.1cM).	 Reproductive organ - Spikelet, flower, glume, awn						GO:0007275 - multicellular organismal development		
2944	TD1	Td1(t)	TWISTED DWARF 1	Twisted dwarf1(t)				Dominant dwarf gene, with twisted leaf. Heterozygotes are semi-dwarf, while homozygotes extreme dwarf and often lethal.	 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
2945	GO	go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7	GOLIATH	goliath, PLASTOCHRON 3, plastochron3, PLASTOCHRON3/GOLIATH, lateral organ boundaries domain 3-7		go-1(pla3-3), go-2(pla3-4), pla3-1, pla3-2, pla3	3	Recessive gene for large embryo. Homozygote often has morphological aberration resulting lethal. This gene is located on chromosome 3 flanked by molecular marker CAPS3-145 and SSR45 (Taramino et al. 2003). All the surviving pla3 plants showed a shortened plastochron and conversion of panicle primary branches to vegetative shoots (Kawakatsu et al. 2009). AB447403. PO:0009009; embryo ; PO:0009010; seed. an AMP1 ortholog. LOC_Os03g57670.1. TO:0006064: rolled leaf.	 Biochemical character,  Vegetative organ - Leaf,  Heterochrony,  Seed - Morphological traits - Embryo	Os03g0790600	LOC_Os03g57670.1, LOC_Os03g57660.4, LOC_Os03g57660.3, LOC_Os03g57660.2, LOC_Os03g57660.1	GR:0061476			GO:0004181 - metallocarboxypeptidase activity, GO:0009908 - flower development, GO:0051781 - positive regulation of cell division, GO:0048366 - leaf development, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010305 - leaf vascular tissue pattern formation, GO:0010229 - inflorescence development, GO:0010082 - regulation of root meristem growth, GO:0006508 - proteolysis, GO:0009790 - embryonic development, GO:0005886 - plasma membrane, GO:0010081 - regulation of inflorescence meristem growth, GO:0005634 - nucleus, GO:0010080 - regulation of floral meristem growth, GO:0007275 - multicellular organismal development, GO:0004180 - carboxypeptidase activity, GO:0009653 - anatomical structure morphogenesis, GO:0009640 - photomorphogenesis	TO:0000655 - leaf development trait, TO:0000287 - brown rice shape, TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0009010 - seed , PO:0001050 - leaf development stage 
2946	YL	yl(t), yl	YELLOW-GREEN LEAF	yellow-green leaf (t), yellowish-green leaf			5	yellow-green leaf due to low chlorophyll b content. This gene is located on chromosome 5 flanked by SSR markers RM3838 (3.4cM) and RM169 (13.9cM).	 Coloration - Chlorophyll			GR:0061492			GO:0015995 - chlorophyll biosynthetic process		
2947	qLTG-2-2(t) (qLTG-2)	qLTG-2-2(t) (qLTG-2)	low temperature germinability (QTL)-2-2(t)	low temperature germinability (QTL)-2-2(t)			2	This QTL controls low temperature germinability, being located on chromosome 2 flanked by markers XNpb67 and R418.	 Tolerance and resistance - Stress tolerance								
2948	qLTG-7(t)	qLTG-7(t)	low temperature germinability (QTL)-7 (t)	low temperature germinability (QTL)-7 (t)			7	TL controls low temperature germinability, being located on chromosome 7 flanked by markers R1440 and R1357.	 Tolerance and resistance - Stress tolerance								
2949	qLTG-12(t)	qLTG-12(t)	low temperature germinability (QTL)-12(t)	low temperature germinability (QTL)-12(t)			12	This QTL controls low temperature germinability, being located on chromosome 12 flanked by markers XNpb148 and C1069.	 Tolerance and resistance - Stress tolerance								
2951	PLDalpha1	RPLD1, PLD1, OsPLDalpha1	PHOSPHOLIPASE  D ALPHA 1	Rice phospholipase D-1, Phospholipase D alpha 1, PLD alpha 1, Choline phosphatase 1, Phosphatidylcholine-hydrolyzing phospholipase D 1, phospholipase Dalpha1	PHOSPHOLIPASE D ALPHA 1	pldalpha1-1, pldalpha1	1	LOC_Os01g07760. This gene controls phospholipase D in rice, being located on chromosome 1 at 24.0cM flanked by two markers RG472 and RG246. AB571657. AB001920, D73411. AU091558, AU032202, BE039748, AU032715, D47979, AU032201, AU062713, AW155115, AW155255, AU182480, AU184488, BI118697, AU197861, AU197860, BI799720, BI813684, BI807829, AU184489. Os01g0172400. EC=3.1.4.4 Q43007.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0172400	LOC_Os01g07760.2, LOC_Os01g07760.1				GO:0046470 - phosphatidylcholine metabolic process, GO:0005509 - calcium ion binding, GO:0004630 - phospholipase D activity, GO:0070290 - NAPE-specific phospholipase D activity, GO:0016042 - lipid catabolic process, GO:0016020 - membrane, GO:0006654 - phosphatidic acid biosynthetic process, GO:0050826 - response to freezing, GO:0009631 - cold acclimation, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
2952	PLDALPHA3	OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2	PHOSPHOLIPASE D ALPHA 3	Phospholipase D alpha 3, Phospholipase D alpha 2, PLD alpha 2, PLD2, phospholipase Dalpha3, phospholipase eta 1	PHOSPHOLIPASE D ALPHA 3		6	This gene controls phospholipase D in rice, being located on chromosome 5 at 87.5, tandemly arrayed with RPLD4 and RPLD3 flanked by markers, RG648 (84.3cM), RG424 (84.7cM) and RG172 (102.9cM). EC=3.1.4.4 P93844. AB001919, AP003629. AU089782, AU089781. OsPLDeta1 in Elias et al. 2002.	 Biochemical character	Os06g0604400	LOC_Os06g40190.1				GO:0016020 - membrane, GO:0005509 - calcium ion binding, GO:0016042 - lipid catabolic process, GO:0070290 - NAPE-specific phospholipase D activity, GO:0004630 - phospholipase D activity, GO:0046470 - phosphatidylcholine metabolic process		
2953	PLDalpha4	OsPLDalpha4, RPLD3, OsPLDeta2	PHOSPHOLIPASE D ALPHA 4	Phospholipase D alpha 4, phospholipase Dalpha4, phospholipase D eta 2	PHOSPHOLIPASE D ALPHA 4		6	This gene controls phospholipase D in rice, being located on chromosome 5 at 87.5cM tandemly arrayed with RPLD2 and RPLD4, and flanked by markers RG648 (84.3cM), RG424 (84.7cM) and RG172 (102.9cM). AF271356. OsPLDeta2 in Elias et al. 2002.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Insect resistance	Os06g0604200	LOC_Os06g40170.1				GO:0005509 - calcium ion binding, GO:0046470 - phosphatidylcholine metabolic process, GO:0070290 - NAPE-specific phospholipase D activity, GO:0016042 - lipid catabolic process, GO:0016020 - membrane, GO:0004630 - phospholipase D activity		
2954	PLDalpha5	OsPLDalpha5, RPLD4, OsPLDeta3	PHOSPHOLIPASE D ALPHA 5	Phospholipase D alpha 5, phospholipase Dalpha5, phospholipase D eta 3	PHOSPHOLIPASE D ALPHA 5		6	This gene controls phospholipase D in rice, being located on chromosome 5 at 87.5cM tandemly arrayed with RPLD2 and RPLD3, flanked by markers RG648 (84.3cM), RG424 (84.7cM) and RG172 (102.9cM). AF271357. OsPLDeta3 in Elias et al. 2002.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Insect resistance	Os06g0604300	LOC_Os06g40180.1				GO:0004630 - phospholipase D activity, GO:0046470 - phosphatidylcholine metabolic process, GO:0016042 - lipid catabolic process, GO:0005509 - calcium ion binding, GO:0016020 - membrane, GO:0070290 - NAPE-specific phospholipase D activity		
2955	PLDdelta2	OsPLDdelta2, RPLD5, OsPLDnu1	PHOSPHOLIPASE D DELTA 2	Phospholipase D delta 2, Phospholipase D nu 1	PHOSPHOLIPASE D DELTA 2		3	This gene controls pholspholipase D in rice, being located on chromosome 3 at 158.2cM distal to the marker RG418X (154.4cM). AF271358. OsPLDnu1 in Elias et al. 2002.	 Biochemical character	Os03g0840800	LOC_Os03g62410.2, LOC_Os03g62410.1				GO:0016020 - membrane, GO:0016042 - lipid catabolic process, GO:0005509 - calcium ion binding, GO:0046470 - phosphatidylcholine metabolic process, GO:0070290 - NAPE-specific phospholipase D activity, GO:0004630 - phospholipase D activity		
2956	TUB1	OsTUB1, TUBB1, OSTB-34	BETA-TUBULIN 1	beta tubulin 1, Tubulin beta-1 chain, Beta-1-tubulin	BETA-TUBULIN 1		1	This gene is one of isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 1. BETA-TUBULIN;ALPHA-TUBULIN. Q43594. X78142.	 Biochemical character	Os01g0282800	LOC_Os01g18050.1				GO:0005525 - GTP binding, GO:0051258 - protein polymerization, GO:0007018 - microtubule-based movement, GO:0003924 - GTPase activity, GO:0005874 - microtubule, GO:0005198 - structural molecule activity		
2957	TUB2	OsTUB2, TUBB2	BETA-TUBULIN 2	beta tubulin 2, Tubulin beta-2 chain, Beta-2-tubulin	BETA-TUBULIN 2		3	This gene is one of isotype genes controlling β-tubulin, a basic component of microtubules. This gene is located on chromosome 3. Q8H7U1.	 Biochemical character	Os03g0105600	LOC_Os03g01530.1				GO:0007018 - microtubule-based movement, GO:0051258 - protein polymerization, GO:0005198 - structural molecule activity, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005874 - microtubule		
2958	TUB3	OsTUB3, TUBB3, RTUB-2	BETA-TUBULIN 3	beta tubulin 3, Tubulin beta-3 chain, Beta-3-tubulin, beta tubulin 2	BETA-TUBULIN 3		6	This gene is one of isotype genes which control beta-tubulin, a basic component of microtubules in rice.  Q40665. L33263. KC626108-KC626119 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os06g0671900	LOC_Os06g46000.1				GO:0007018 - microtubule-based movement, GO:0005198 - structural molecule activity, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0051258 - protein polymerization, GO:0005874 - microtubule		
2959	TUB4	OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16	BETA-TUBULIN 4	beta tubulin 4, Tubulin beta-4 chain, Beta-4-tubulin, beta tubulin 1, beta-tubulin isotype 16	BETA-TUBULIN 4		1	This gene is one of isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 1. P45960. X78143. D30716. L19598. AJ306592 (promoter region).	 Biochemical character	Os01g0805900	LOC_Os01g59150.2, LOC_Os01g59150.1				GO:0051258 - protein polymerization, GO:0007018 - microtubule-based movement, GO:0003924 - GTPase activity, GO:0005198 - structural molecule activity, GO:0005525 - GTP binding, GO:0005874 - microtubule		
2960	TUB5	OsTUB5, TUBB5, OSTB-50, R2242	BETA-TUBULIN 5	beta tubulin 5, Tubulin beta-5 chain, Beta-5-tubulin	BETA-TUBULIN 5		2	This gene is one of the isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 2. P46265. X79367. D30717.	 Biochemical character	Os02g0167300	LOC_Os02g07060.1				GO:0005874 - microtubule, GO:0005525 - GTP binding, GO:0005198 - structural molecule activity, GO:0007018 - microtubule-based movement, GO:0051258 - protein polymerization, GO:0003924 - GTPase activity		
2961	TUB6	OsTUB6, TUBB6	BETA-TUBULIN 6	beta tubulin 6, Tubulin beta-6 chain, Beta-6-tubulin	BETA-TUBULIN 6		5	This gene is one of the isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 5. Q76FS3.	 Biochemical character	Os05g0413200	LOC_Os05g34170.3, LOC_Os05g34170.2				GO:0051258 - protein polymerization, GO:0005525 - GTP binding, GO:0005874 - microtubule, GO:0005198 - structural molecule activity, GO:0007018 - microtubule-based movement, GO:0003924 - GTPase activity		
2962	TUB7	OsTUB7, TUBB7, pTUB22	BETA-TUBULIN 7	beta tubulin 7, Tubulin beta-7 chain, Beta-7-tubulin	BETA-TUBULIN 7		3	This gene is one of the isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 3. P37832. D13224.	 Biochemical character	Os03g0780600	LOC_Os03g56810.1				GO:0051258 - protein polymerization, GO:0007018 - microtubule-based movement, GO:0005874 - microtubule, GO:0005525 - GTP binding, GO:0005198 - structural molecule activity, GO:0003924 - GTPase activity		
2963	TUB8	OsTUB8, TUBB8	BETA TUBULIN 8	beta tubulin 8, Tubulin beta-8 chain, Beta-8-tubulin	BETA TUBULIN 8 		3	This gene is one on the isotype genes which control β-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 3. Q76FS2.	 Biochemical character	Os03g0661300	LOC_Os03g45920.1				GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0007018 - microtubule-based movement, GO:0005198 - structural molecule activity, GO:0051258 - protein polymerization, GO:0005874 - microtubule		
2964	EXPA1	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA	ALPHA-EXPANSIN 1	Rice expansin-1, Expansin-A1, Alpha-expansin-1, Expansin S2	ALPHA-EXPANSIN 1		4	LOC_Os04g15840. This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. Q7XWU8, Y07782(cDNA), AF394543(Genomic). D42004, D40668.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0228400	LOC_Os04g15840.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0019898 - extrinsic to membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0007047 - cell wall organization, GO:0009664 - plant-type cell wall organization, GO:0008083 - growth factor activity		
2965	EXPA2	OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2	ALPHA-EXPANSIN 2	Rice expansin-2, Expansin-A2, Alpha-expansin-2	ALPHA-EXPANSIN 2		1	LOC_Os01g60770. This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. Q40636. U30477(cDNA), AF39544(Genomic). D24200, D47507.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0823100	LOC_Os01g60770.1				GO:0019898 - extrinsic to membrane, GO:0005576 - extracellular region, GO:0007047 - cell wall organization, GO:0009664 - plant-type cell wall organization, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008083 - growth factor activity, GO:0005618 - cell wall		
2966	EXPA3	OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3	ALPHA-EXPANSIN 3	Rice expansin-3, Expansin-A3, Alpha-expansin-3	ALPHA-EXPANSIN 3		5	LOC_Os05g19570. This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. Q40637. U30479(cDNA). D23861. GO:0090548: response to nitrate starvation.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os05g0276500	LOC_Os05g19570.1				GO:0016036 - cellular response to phosphate starvation, GO:0005576 - extracellular region, GO:0019898 - extrinsic to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0008083 - growth factor activity, GO:0009651 - response to salt stress, GO:0048364 - root development, GO:0007047 - cell wall organization	TO:0006001 - salt tolerance, TO:0002665 - root hair length, TO:0000115 - root mass density, TO:0000227 - root length	PO:0007520 - root development stage , PO:0020127 - primary root , PO:0025025 - root system , PO:0020121 - lateral root 
2967	EXPA4	OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22	ALPHA-EXPANSIN 4	Rice expansin-4, Expansin-A4, Alpha-expansin-4	ALPHA-EXPANSIN 4		5	LOC_Os05g39990. This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. A2Y5R6(indica), Q0DHB7(japonica). U85246(cDNA), AF394545(Genomic).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0477600	LOC_Os05g39990.1				GO:0008083 - growth factor activity, GO:0009664 - plant-type cell wall organization, GO:0005576 - extracellular region, GO:0007047 - cell wall organization, GO:0005618 - cell wall, GO:0019898 - extrinsic to membrane		
2968	XA21D	Xa21D	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 21D	Xanthomonas oryzae pv. oryzae resistance 21D			11	One of Xa21 gene family. Xa21D encodes a receptor-like protein carrying leucine-rich repeat (LRR) motifs in the presumed extracellular domain that determines race-specific recognition. (20660)	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
2969	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3	LEAFY HULL STERILE 1	MADS box gene1, leafy hull sterile1, leafy hull sterile 1, LEAFY HULL STERILE1, naked seed rice, over developed palea, MADS-box transcription factor 1, Protein LEAFY HULL STERILE 1, Protein SEPALLATA-like, abnormal floral organs, long grain 3b	MADS-BOX TRANSCRIPTION FACTOR 1	osmads1-z, ago, mads1/nsr, osmads1, qlgy3, lgy3	3	One of the MADS box genes causing flower organ deformation. This is the same gene as leafy hull sterile 1 (lhs1), being located on chromosome 3 between two markers, RG100 and RZ313.Deformation of lemma and palea showing leafy structures accompanied by various malformations of floral organs and low seed setting. A2XDY1(indica). Q10PZ9(japonica). PO:0009036; lodicule ; PO:0009039; glume ; PO:0009037; lemma ; PO:0006000; hull (sensu Poaceae) ; PO:0006384; gynoecium (sensu Poaceae) ; PO:0009038; palea ; PO:0000229; floral meristem ; PO:0006441; stamen (sensu Poaceae) ; PO:0009051; spikelet ; PO:0009049; inflorescence ; PO:0009010; seed ; PO:0009046; flower. GRO:0007151; 6.1-flowering stage ; GRO:0007158; spikelet development. L34271. EU327204-EU327254 (Oryza rufipogon, Oryza nivara). GU727114-GU727133 (wild rice species). FJ811125-FJ811165 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ223344-DQ223351, DQ223383-DQ223397, DQ223402, DQ223403, DQ223414-DQ223418, DQ911248, DQ911249 (wild rice species). EF069904-EF069973 (O. sativa and wild rice species). JQ414694-JQ414737 (wild rice species). a SEP-like gene. LOC_Os03g11614. TO:20109: vascular bundle development trait. TO:0000869: glume anatomy and morphology trait. TO:0000975: grain width.	 Reproductive organ - Heading date,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0215400	LOC_Os03g11614.1	GR:0060502		50.5	GO:0042127 - regulation of cell proliferation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0045595 - regulation of cell differentiation, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0007275 - multicellular organismal development, GO:0010076 - maintenance of floral meristem identity, GO:0009908 - flower development, GO:0001708 - cell fate specification, GO:0010582 - floral meristem determinacy, GO:0010229 - inflorescence development, GO:0005515 - protein binding, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0030154 - cell differentiation, GO:0048437 - floral organ development, GO:0003700 - transcription factor activity, GO:0010093 - specification of floral organ identity, GO:0003677 - DNA binding	TO:0000396 - grain yield, TO:0000657 - spikelet anatomy and morphology trait, TO:0000162 - seed quality, TO:0002730 - grain shape, TO:0000266 - chalky endosperm, TO:0000734 - grain length, TO:0000436 - spikelet sterility, TO:0001000 - glume cover, TO:0000040 - panicle length, TO:0000499 - flower anatomy and morphology trait, TO:0000622 - flower development trait, TO:0002616 - flowering time, TO:0000417 - lemma and palea pubescence, TO:0000245 - pollen free, TO:0000344 - days to flower, TO:0000377 - cooked grain elongation, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000614 - lemma shape, TO:0000650 - lemma length, TO:0000437 - male sterility, TO:0000225 - stamen number, TO:0000670 - floret number, TO:0000089 - panicle type, TO:0000223 - pistil anatomy and morphology trait, TO:0000207 - plant height, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000397 - grain size, TO:0000621 - inflorescence development trait	PO:0000229 - flower meristem , PO:0009039 - glume , PO:0009046 - flower , PO:0009049 - inflorescence , PO:0009051 - spikelet , PO:0001049 - lodicule development stage , PO:0001048 - palea development stage , PO:0001047 - lemma development stage , PO:0006000 - caryopsis hull , PO:0009062 - gynoecium , PO:0009029 - stamen , PO:0009010 - seed , PO:0007615 - flower development stage , PO:0009037 - lemma , PO:0009036 - lodicule , PO:0009038 - palea , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
2972	LGC1	Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1	LOW GLUTELIN CONTENT 1	Low glutelin content1, Low glutelin content 1, GLUTELIN 1, lack of glutelin subunit1, lack of glutelin subunit 1, lack of glutelin subunit-1, rice glutelin-8	GLUTELIN 1		2	A dominant gene that suppresses the glutelin multigene family via RNA silencing and reduces glutelin content in rice grains. , Low glutelin content. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060497,GR:0060390			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
2974	OSH1	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75	HOMEOBOX 1	Oryza sativa homeobox1, Homeobox protein OSH1, Homeobox protein knotted-1-like 6, Homeobox protein knotted-1-like 1, Rice KNOX gene-1, KNOX PROTEIN 1, KNOX protein 1, KNOX protein 1, HOMEOBOX 1, HOMEOBOX PROTEIN OSH1	HOMEOBOX PROTEIN OSH1	osh1, osh1-1, osh1-2	3	LOC_Os03g51690. Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH1 is responsible to maintain cells in an indeterminate state in all meristematic tissues. D16507. P46609. C19151, AU091905. AF003599. PO:0009025; leaf. an ortholog of KNOTTED1 (KN1). GO:0090511: periclinal cell division.	 Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0727000	LOC_Os03g51690.3, LOC_Os03g51690.2, LOC_Os03g51690.1	GR:0061179			GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus, GO:0009901 - anther dehiscence, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0043565 - sequence-specific DNA binding, GO:0048653 - anther development, GO:0016132 - brassinosteroid biosynthetic process, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000492 - leaf shape, TO:0002672 - auxin content, TO:0000206 - leaf angle, TO:0000432 - temperature response trait, TO:0002689 - leaf sheath length, TO:0002688 - leaf lamina joint bending	PO:0001004 - anther development stage , PO:0009025 - vascular leaf 
2975	OSH15	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3	HOMEOBOX 15	Oryza sativa homeobox15, Rice KNOX gene-15, Homeobox protein knotted-1-like 12, Homeobox protein OSH15, Homeobox protein HOS3, Homeobox protein knotted-1-like 3, KNOX PROTEIN 3, Oryza sativa Homeobox 15	HOMEOBOX PROTEIN OSH15	d6-1, d6-ID6, d6-tankanshirasasa	7	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH15 regulates the length (growth) of 1st internode. KNOX class homeodomain protein. loss-of-function of the OSH15 gene causes the d6-type dwarf phenotype in rice (Sato et al. 1999). Class 1 KNOX gene. Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH15 regulates the length (growth) of 1st internode. KNOX class homeodomain protein. AF323786. AF003601. O65034(indica). O80416(japonica). PO:0009025; leaf. TO:0000755: shoot internode anatomy and morphology trait. 	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Leaf,  Vegetative organ - Culm	Os07g0129700	LOC_Os07g03770.1	GR:0061109,GR:0061181			GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0048831 - regulation of shoot development, GO:0003677 - DNA binding, GO:0080006 - internode patterning, GO:0003700 - transcription factor activity	TO:0000492 - leaf shape, TO:0000145 - internode length	PO:0009025 - vascular leaf , PO:0007089 - stem elongation stage , PO:0005005 - shoot internode 
2976	OSH3	OsH3, H3, HOS13	HOMEOBOX 3	Oryza sativa homeobox3, Homeobox protein knotted-1-like 7, Homeobox protein OSH3, Homeobox protein HOS13, Rice KNOX gene-3	HOMEOBOX PROTEIN OSH3		3	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. Os03g0727200. AB028882. Q948L5. PO:0020105; ligule ; PO:0009025; leaf.	 Vegetative organ - Shoot apical meristem(SAM)	Os03g0727200	LOC_Os03g51710.2, LOC_Os03g51710.1	GR:0061180			GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding	TO:0000492 - leaf shape, TO:0000335 - ligule shape	PO:0009025 - vascular leaf , PO:0020105 - ligule 
2977	OSH6	OsH6, HOS16	HOMEOBOX 6	Oryza sativa homeobox6, Rice KNOX gene-6, Homeobox protein knotted-1-like 1, Homeobox protein OSH6, Homeobox protein HOS16, Oryza sativa Homeobox 6	HOMEOBOX PROTEIN OSH6		1	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium.Os01g0302500. Q9FP29. PO:0009025; leaf. ortholog of maize Lg3 (Liguleless3).	 Vegetative organ - Shoot apical meristem(SAM)	Os01g0302500	LOC_Os01g19694.1	GR:0061311			GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
2978	OSH10	OsH10, H10, HB412	HOMEOBOX 10	Oryza sativa homeobox10, Homeobox protein knotted-1-like 4, Homeobox protein OSH10, Rice KNOX gene-10	HOMEOBOX PROTEIN OSH10		3	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. LOC_Os03g47016. Q75LX7. PO:0009025; leaf. AF003600.	 Vegetative organ - Shoot apical meristem(SAM)	Os03g0673000	LOC_Os03g47016.1	GR:0061312			GO:0009536 - plastid, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
2979	OSH43	OsH43, H43	HOMEOBOX 43	Oryza sativa homeobox43, Homeobox protein knotted-1-like 8, Homeobox protein OSH43, Rice KNOX gene-43	HOMEOBOX PROTEIN OSH43		3	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium.Os03g0771500. AB028884. Q10ED2. PO:0009025; leaf.	 Vegetative organ - Shoot apical meristem(SAM)	Os03g0771500	LOC_Os03g56110.2, LOC_Os03g56110.1	GR:0061313			GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
2981	MSP1	Msp1, OsMSP1	MULTIPLE SPOROCYTE 1	MULTIPLE SPOROCYTE1, multiple sporocyte, multiple sporogeneous cells-1, MULTIPLE SPOROCYTES1		msp1, msp1-4, msp1-6	1	LOC_Os01g68870. AB103395. AY885857-AY885886 and DQ374775-DQ374800  (O. sativa and other wild rice species, partial ads). MSP1 controls early sporogenic development, restricting the number of cells entering into male and female sporogeniesis and initiating anther wall formation in rice. Putative leucin-rich repeat protein kinase, Putative extra sporogenous cells. GRO:0007140; B-reproductive stage ; GRO:0007209; stamen stage ST0 ; GRO:0007213; stamen stage ST4 ; GRO:0007211; stamen stage ST1 ; GRO:0007210; stamen stage ST3 ; GRO:0007183; ovule stage OV3. a rice ortholog of Arabidopsis EMS1/EXS. orthologous to TPD1 (MAC1).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0917500	LOC_Os01g68870.2, LOC_Os01g68870.1	GR:0061178			GO:0004674 - protein serine/threonine kinase activity, GO:0004713 - protein tyrosine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0009554 - megasporogenesis, GO:0009556 - microsporogenesis, GO:0010234 - tapetal cell fate specification, GO:0010480 - microsporocyte differentiation, GO:0016020 - membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0032940 - secretion by cell, GO:0048653 - anther development, GO:0048658 - tapetal layer development	TO:0000437 - male sterility, TO:0000725 - megasporocyte number, TO:0000726 - microsporocyte number	PO:0000002 - anther wall , PO:0009029 - stamen , PO:0020047 - microsporocyte , PO:0020020 - nucellus , PO:0000431 - megasporocyte , PO:0009037 - lemma , PO:0001004 - anther development stage , PO:0009038 - palea , PO:0020003 - plant ovule 
2982	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7	RETROTRANSPOSON 17	Retrotransposon17, Retrotransposon 17, Retrotransposon-17, retrotransposon Tos17, LTR retrotransposon Osr21				Tissue culture-induced activationi of Tos17 may be a useful tool for insertional mutagenesis and functional analysis of genes. D85876. AC087545: 81711-84269.  a tissue culture-activated copia retrotransposon.	 Biochemical character			GR:0061155			GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
2983	KARMA	Karma	RETROTRANSPOSON	retrotransposon, LINE-type retrotransposon Karma, non-LTR retrotransposable element Karma				A LINE-type retrotransposon.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
2984	GAMYB	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB	GIBBERELLIN MYB GENE	homologue to the barley Myb-like transcription factor, Transcription factor GAMYB, Gibberellin myb gene	TRANSCRIPTION FACTOR GAMYB	gamyb-1, gamyb-2, gamyb-3, gamyb-4	1	A transcriptional regulator of gebberellin (GA)-dependent alpha-amylase expression in aleurone cells. OsGAMYB also is important for floral organ development and essential for pollen development.X98355. CF323240. A2WW87(indica). Q0JIC2(japonica). R2R3-MYB. PO:0000003; whole plant ; PO:0009025; leaf. KC611040-KC611052 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os01g0812000	LOC_Os01g59660.3, LOC_Os01g59660.2, LOC_Os01g59660.1, LOC_Os01g59660.4	GR:0061305			GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0009908 - flower development, GO:0030154 - cell differentiation, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0007126 - meiosis, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0048653 - anther development	TO:0000401 - plant growth hormone sensitivity, TO:0000492 - leaf shape, TO:0000187 - anther color, TO:0000531 - anther length, TO:0000437 - male sterility	PO:0000003 - whole plant , PO:0009025 - vascular leaf 
2985	PAIR1	Pair1	HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1	HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1, Homologous pairing aberration in rice meiosis 1, Protein PAIR1, Protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1	PROTEIN PAIR1	pair1	3	This gene plays essentioal role in establishment of homologous chromosome pairing in rice meiosis. During prophase I of the pair1 meiocyte, all the chromosomes become entangled to form a compact sphere adhered to a nucleolus, and homologous pairing failed. Coiled-coil protein. LOC_Os03g01590. Q75RY2. AB158462. PO:0020047; microsporocyte ; PO:0000431; megasporocyte. GRO:0007212; stamen stage ST5 ; GRO:0007213; stamen stage ST4 ; GRO:0007179; ovule stage OV4 ; GRO:0007183; ovule stage OV3 ; GRO:0007147; 4.1-panicle initiation stage. KC626093-KC626127 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os03g0106300	LOC_Os03g01590.2, LOC_Os03g01590.1	GR:0100119			GO:0005634 - nucleus, GO:0007133 - meiotic anaphase I, GO:0007128 - meiotic prophase I, GO:0009556 - microsporogenesis, GO:0009554 - megasporogenesis, GO:0007134 - meiotic telophase I	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000729 - meiotic cell cycle trait	PO:0000431 - megasporocyte , PO:0020047 - microsporocyte 
2986	RPA1	OsRPA1, OsRPA70b, RPA70b	REPLICATION PROTEIN A 1	replication protein A1, Replication protein A 70kDa subunit b, RPA70kDa subunit b	REPLICATION PROTEIN A 1		3	This gene encodes an ortholog of replication protein A1 (RPA1) in relation to deepwater response. This gene is expressed in the intercalary meristem of internode and its transcript level increases as a result of GA treatment and submergence.AF009179, AB111916. Q10Q08. up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0214100	LOC_Os03g11540.1				GO:0009739 - response to gibberellin stimulus, GO:0003677 - DNA binding, GO:0006310 - DNA recombination, GO:0010224 - response to UV-B, GO:0006260 - DNA replication, GO:0005662 - DNA replication factor A complex, GO:0046872 - metal ion binding, GO:0006281 - DNA repair, GO:0010332 - response to gamma radiation, GO:0009790 - embryonic development, GO:0030912 - response to deep water		
2987	RFL	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2	FLO-LFY HOMOLOG OF RICE	Rice LFY-like gene, Probable transcription factor FL, RICE FLORICAULA, ABERRANT PANICLE ORGANIZATION 2, RFL/ABERRANT PANICLE ORGANIZATION 2, SHORT and SOLID CULM	FLO-LFY HOMOLOG OF RICE	apo2, ssc	4	A homolog of FLORICAULA (FLO) of Antirrhinum and LEAFY (FLY) of Arabidopsis. the rice homologue of Ara- bidopsis LFY. RFL is not involved in floral initiation as FLO/FLY, but in panicle branching. A2XX39(indica), Q0JAI1(japonica). TO:0000784: inflorescence branch anatomy and morphology trait. GO:0090506: axillary shoot meristem initiation. KC626097-KC626107 (O. sativa and wild rice species, 3' UTR). AF065992, AF397034. LOC_Os04g51000. GO:0010336: gibberellic acid homeostasis. GO:2000144: positive regulation of DNA-dependent transcription, initiation. TO:0020083: stem diameter.	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Culm,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os04g0598300	LOC_Os04g51000.1				GO:0007275 - multicellular organismal development, GO:0010223 - secondary shoot formation, GO:0051510 - regulation of unidimensional cell growth, GO:0045449 - regulation of transcription, GO:0048573 - photoperiodism, flowering, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0010229 - inflorescence development, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0051302 - regulation of cell division, GO:0010073 - meristem maintenance, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0043067 - regulation of programmed cell death, GO:0045487 - gibberellin catabolic process	TO:0002759 - grain number, TO:0001035 - stem width, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000050 - inflorescence branching, TO:0000621 - inflorescence development trait, TO:0002675 - gibberellic acid content, TO:0002616 - flowering time, TO:0000329 - tillering ability, TO:0000576 - stem length, TO:0000547 - primary branch number	PO:0001083 - inflorescence development stage , PO:0000034 - vascular system , PO:0007089 - stem elongation stage , PO:0006079 - shoot meristem , PO:0000017 - vascular leaf primordium 
2988	PSK	OsPSK, PSK-alpha, PSK-beta	PHYTOSULFOKINE-ALPHA PRECURSOR	phytosulfokine, phytosulfokine-alpha, preprophytosulfokine, phytosulfokine precursor, Cell growth factor (Phytosulfokine), Phytosulfokines 1, Phytosulfokine-alpha, Phytosulfokine-a, Phytosulfokine-beta, Phytosulfokine-b	PHYTOSULFOKINE-ALPHA PRECURSOR		6	This gene codes a precursor of phytosulfokine-alpha, which strongly promotes proliferation of plant cells in culture. plant peptide growth factor, mitogenic peptide. AB026837, AB020505. A2YFB4(indica), Q0DAS9(japonica). D42693, D43399.	 Biochemical character	Os06g0633300	LOC_Os06g42680.2, LOC_Os06g42680.1	GR:0061486			GO:0008083 - growth factor activity, GO:0030154 - cell differentiation, GO:0005576 - extracellular region, GO:0007275 - multicellular organismal development, GO:0009790 - embryonic development		
2989	RAC1	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1	RAC/ROP-TYPE GTPASE 1	small GTP-binding protein 1, Rac-like GTP-binding protein 1, GTPase Rac homolog, Rice homolog of mammalian Rac-GTPase RAC1	RAC/ROP-TYPE GTPASE 1		1	This gene regulates cell death against blast disease infection, i.e. hyper sensitiveness. AB029508. Q9SSX0. PO:0009011; plant structure ; PO:0000003; whole plant. GO:2000377: regulation of reactive oxygen species metabolic process. KC611164-KC611172 (O. sativa and wild rice species, partial cds). Integrator of PTI (PAMP-triggered immunity) and ETI (effector-triggered immunity). GO:2000379: positive regulation of reactive oxygen species metabolic process. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os01g0229400	LOC_Os01g12900.3, LOC_Os01g12900.2, LOC_Os01g12900.1	GR:0061388			GO:0005525 - GTP binding, GO:0005737 - cytoplasm, GO:0006915 - apoptosis, GO:0019898 - extrinsic to membrane, GO:0005886 - plasma membrane, GO:0002238 - response to molecule of fungal origin, GO:0007264 - small GTPase mediated signal transduction, GO:0050832 - defense response to fungus, GO:0052567 - response to defense-related host reactive oxygen species production, GO:0006952 - defense response, GO:0031347 - regulation of defense response	TO:0000112 - disease resistance, TO:0000439 - fungal disease resistance, TO:0000074 - blast disease	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009066 - anther 
2990	REB	OsZIP33, RISBZ2, OsbZIP33	ENDOSPERM BZIP	rice endosperm bZIP, bZIP transcription factor 33, rice seed b-Zipper 2, b-ZIP transcription factor 33			3	This gene encodes the rice transcription factor, REB (rice endosperm bZIP). D78609.	 Seed - Morphological traits - Endosperm	Os03g0796900	LOC_Os03g58250.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
2992	qRBR-1-1 (t) (rbr1a)	qRBR-1-1 (t) (rbr1a)	Pyricularia grisea resistance (QTL)-1-1(t)	Pyricularia grisea resistance (QTL)-1-1(t)			1	This QTL is resistant to the blast, P. grisea, races F1366 and V86013. This QTL is located on chromosome 1 flanked by markers C161 and R753.	 Tolerance and resistance - Disease resistance								
2993	qRBR-1-2 (t) (rbr1b)	qRBR-1-2 (t) (rbr1b)	Pyricularia grisea resistance (QTL)-1-2(t)	Pyricularia grisea resistance (QTL)-1-2(t)			1	This QTL is resistant to the blast, P. grisea, races F1366 and F1814. This QTL is located on chromosome 1 flanked by markers RM532 and RM259 or RM259 and RM243 for race F1366 and markers RM243 and RG173 for race F1814.	 Tolerance and resistance - Disease resistance								
2994	qRBR-1-3 (t) (rbr1c)	qRBR-1-3 (t) (rbr1c)	Pyricularia grisea resistance (QTL)-1-3(t)	Pyricularia grisea resistance (QTL)-1-3(t)			1	This QTL is resistant to the blast, P. grisea, races F1366 and V86013, being located on chromosome 1 flanked by markers G393 and R2201.	 Tolerance and resistance - Disease resistance								
2995	qRBR-1-4 (t) (rbr1d)	qRBR-1-4 (t) (rbr1d)	Pyricularia grisea resistance (QTL)-1-4(t)	Pyricularia grisea resistance (QTL)-1-4(t)			1	This QTL is resistant to the blast, P. grisea, races  F1366, F1814 and V86013. This QTL is located on chromosome 1 flanked by markers RM212 and C547 or C547 and C2340 for the race F1366, markers RM212 and C547 or C2340 and C86 for the race F1814, and markers C547 and C2340 for the race V86013.	 Tolerance and resistance - Disease resistance								
2996	qRBR-2 (t) (rbr2)	qRBR-2 (t) (rbr2)	Pyricularia grisea resistance (QTL)-2 (t)	Pyricularia grisea resistance (QTL)-2 (t)			2	This QTL is resistant to the blast, P. grisea, races F1366, F1814 and V86013, being located on chromosome 2 flanked by markers RM213 and RM208.	 Tolerance and resistance - Disease resistance								
2997	qRBR-3 (t) (rbr3)	qRBR-3 (t) (rbr3)	Pyricularia grisea resistance (QTL)-3 (t)	Pyricularia grisea resistance (QTL)-3 (t)			3	This QTL is resistant to the blast, P. grisea, race F1814, being located on chromosome 3 flanked by markers RZ403 and R19.	 Tolerance and resistance - Disease resistance								
2998	qRBR-7-1 (t) (rbr7a)	qRBR-7-1 (t) (rbr7a)	Pyricularia grisea resistance (QTL)-7-1 (t)	Pyricularia grisea resistance (QTL)-7-1 (t)			7	This QTL is resistant to the blast, P. grisea, race F1366, being located on chromosome 7 flanked by markers RG528 and RG128 or RG128 and C1023.	 Tolerance and resistance - Disease resistance								
2999	qRBR-7-2 (t) (rbr7b)	qRBR-7-2 (t) (rbr7b)	Pyricularia grisea resistance (QTL)-7-2 (t)	Pyricularia grisea resistance (QTL)-7-2 (t)			7	This QTL is resistant to the blast, P. grisea, race F1366, being located on chromosome 7 flanked by markers RM234 and R1789.	 Tolerance and resistance - Disease resistance								
3000	qRBR-8 (t) (rbr8)	qRBR-8 (t) (rbr8)	Pyricularia grisea resistance (QTL)-8(t)	Pyricularia grisea resistance (QTL)-8(t)			8	This QTL is resistant to the blast, P. grisea, races F1366 and V86013, being located on chromosome 8 flanked by markers RG33 and RM25 or RM25 and R1629 for race R1366, and markers RM25 and R1629 for race V86013.	 Tolerance and resistance - Disease resistance								
3001	qRBR-9-1 (t) (rbr9a)	qRBR-9-1 (t) (rbr9a)	Pyricularia grisea resistance (QTL)-9-1 (t)	Pyricularia grisea resistance (QTL)-9-1 (t)			9	This QTL is resistant to the blast, P. grisea, races F1366 and F1814, being located on chromosome 9 flanked by markers RM201 and C472.	 Tolerance and resistance - Disease resistance								
3002	qRBR-9-2 (t) (rbr9b)	qRBR-9-2 (t) (rbr9b)	Pyricularia grisea resistance (QTL)-9-2(t)	Pyricularia grisea resistance (QTL)-9-2(t)			9	This QTL is resistant to the blast, P. grisea, race F1814, being located on chromosome 9 flanked by markers RM257 and RM242.	 Tolerance and resistance - Disease resistance								
3003	qRBR-9-3 (t) (rbr9c)	qRBR-9-3 (t) (rbr9c)	Pyricularia grisea resistance (QTL)-9-3(t)	Pyricularia grisea resistance (QTL)-9-3(t)			9	This QTL is resistant to the blast, P. grisea, races F1366 and V86013, being located on chromosome 9 flanked by markers RG570 and RG667 for race F1366, and markers RM215 and R1952 for race V86013.	 Tolerance and resistance - Disease resistance								
3004	qRN-3 (t) (QRn3)	qRN-3 (t) (QRn3)	rhizome number (QTL)-3 (t)	rhizome number (QTL)-3 (t)			3	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 3 flanked by markers RM282 and RM5551.	 Vegetative organ - Culm								
3005	qRN-5 (t) (QRn5)	qRN-5 (t) (QRn5)	rhizome number (QTL)-5 (t)	rhizome number (QTL)-5 (t)			5	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 5 flanked by markers RM161 and RM274.	 Vegetative organ - Culm								
3006	qRN-10 (t) (QRn10)	qRN-10 (t) (QRn10)	rhizome number (QTL)-10 (t)	rhizome number (QTL)-10 (t)			10	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 10 flanked by markers RM271 and RM269.	 Vegetative organ - Culm								
3007	qRN-6 (t) (QRn6)	qRN-6 (t) (QRn6)	rhizome number (QTL)-6 (t)	rhizome number (QTL)-6 (t)			6	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 6 flanked by markers RM345 and OSR21.	 Vegetative organ - Culm								
3008	qRN-2 (t) (QRn2)	qRN-2 (t) (QRn2)	rhizome number (QTL)-2 (t)	rhizome number (QTL)-2 (t)			2	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 2 flanked by markers RM341 and RM327.	 Vegetative organ - Culm								
3009	qRN-7 (t) (QRn7)	qRN-7 (t) (QRn7)	rhizome number (QTL)-7 (t)	rhizome number (QTL)-7 (t)			7	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 7 flanked by markers RM125 and RM180.	 Vegetative organ - Culm								
3010	qRL-1(t) (QRl1)	qRL-1(t) (QRl1)	rhizome length (QTL)-1(t)	rhizome length (QTL)-1(t)			1	This QTL derived from O. longistaminata, controls rhizome length, being located on chromosome 1 flanked by markers RM306 and RM237.	 Vegetative organ - Culm								
3011	qRL-6(t) (QRl6)	qRL-6(t) (QRl6)	rhizome length (QTL)-6(t)	rhizome length (QTL)-6(t)			6	This QTL derived from Oryza longistaminata, controls rhizome length, being located on chromosome 6 flanked by markers RM30 and RM7309.	 Vegetative organ - Culm								
3012	qRL-7(t) (QRl7)	qRL-7(t) (QRl7)	rhizome length (QTL)-7(t)	rhizome length (QTL)-7(t)			7	This QTL derived from Oryza longistaminata, controls rhizome length, being located on chromosome 7 flanked by markers RM336 and RM234.	 Vegetative organ - Culm								
3013	qRBD-2(t) (QRbd2)	qRBD-2(t) (QRbd2)	rhizome branching degree (QTL)-2(t)	rhizome branching degree (QTL)-2(t)			2	This QTL derived from Oryza longistaminata, controls rhizome branching degree, being located on chromosome 2 flanked by markers RM71 and RM300.	 Vegetative organ - Culm								
3014	SPA	spa	SMALL PANICLE	small panicle				Formation of primary brances of lowre part of panicle is suppressed.	 Reproductive organ - Panicle, Mode of branching						GO:0007275 - multicellular organismal development		
3015	RAFTIN1	OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1	RAFTIN1	rice raftin1, raftin1, BURP domain-containing protein 13, Protein RAFTIN 1, RAFTIN1protein	BURP DOMAIN-CONTAINING PROTEIN 13		8	This gene regulates the development of pollen. LOC_Os08g38810.  RAC/ROP-TYPE GTPASE. Q7F8U7. KC610928-KC610940 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os08g0496800	LOC_Os08g38810.2, LOC_Os08g38810.1				GO:0009555 - pollen development, GO:0043668 - exine, GO:0016023 - cytoplasmic membrane-bounded vesicle		
3016	SHP1	shp1	SHOOT POSITION-1	shoot position1, shoot position-1				Shoot position in embryo is displaced to the apex of embryo compared with that of wild type.	 Seed - Morphological traits - Embryo						GO:0009888 - tissue development, GO:0009887 - organ morphogenesis		
3017	HOX1	Oshox1, OsHox1	HOMEOBOX GENE 1	rice homeobox gene 1, Homeobox-leucine zipper protein HOX1, Homeodomain transcription factor HOX1, HD-ZIP protein HOX1	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX1		10	LOC_Os10g41230. EF555521, X96681. Q40691(indica), Q7XC54(japonica).	 Other	Os10g0561800	LOC_Os10g41230.1				GO:0003677 - DNA binding, GO:0016563 - transcription activator activity, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
3022	GID2	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e	GIBBERELLIN-INSENSITIVE DWARF 2	gibberellin-insensitive dwarf2, GIBBERELLIN INSENSITIVE DWARF2, GA-insensitive dwarf 2, F-box protein GID2, Gibberellin-insensitive dwarf protein 2, Protein GIBBERELLIN INSENSITIVE DWARF2, G-box factor 14-3-3e protein	GIBBERELLIN-INSENSITIVE DWARF PROTEIN 2	gid2-1, gid2-2, gid2-3, gid2-5, gid2	2	This mutant shows a severe dwarf phenotype with wide leaf blades and dark green leaves, features typical of GA-related mutants such as d1 and d18. Sterile. The gid2 mutation is caused by the defect in GID2, i.e., null mutation. LOC_Os02g36974. Q7XAK4. GRO:0007048; 04-stem elongation stage. CAB77673. D15430. AB100246. a putative meiosis-related gene.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0580300	LOC_Os02g36974.1, LOC_Os02g36974.2, LOC_Os02g36974.3, LOC_Os02g36974.6, LOC_Os02g36974.5, LOC_Os02g36974.4	GR:0080024			GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0060548 - negative regulation of cell death, GO:0005634 - nucleus, GO:0010265 - SCF complex assembly, GO:0019005 - SCF ubiquitin ligase complex, GO:0009740 - gibberellic acid mediated signaling, GO:0007126 - meiosis, GO:0009414 - response to water deprivation, GO:0009615 - response to virus, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0009651 - response to salt stress	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000063 - mimic response, TO:0000299 - leaf lamina color, TO:0000370 - leaf width, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance, TO:0006001 - salt tolerance	PO:0000037 - shoot apex , PO:0009082 - spikelet floret , PO:0020122 - inflorescence axis , PO:0009005 - root , PO:0020039 - leaf lamina , PO:0020104 - leaf sheath 
3023	CDR1	cdr1, cdr1*	CELL DEATH AND RESISTANCE 1	cell death and resistance1				A lesion mimic mutant for resistance to the rice blast fungus. Many small brownish lesions uniformly spreading over the entire leaf surface appear and become visible around 20 days after sowing. PO:0009025; leaf.	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic			GR:0060112			GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
3024	CDR2	cdr2, cdr2*	CELL DEATH AND RESISTANCE 2	cell death and resistance2				A lesion mimic mutant for resistance to the rice blast fungus. Many small brownish lesions spreding over the entire leaf surface appear and become visible aroun 50 days after sowing. PO:0009025; leaf.	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic			GR:0060113			GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000468 - leaf blast disease resistance, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
3025	CDR3	Cdr3, Cdr3*	CELL DEATH AND RESISTANCE 3	Cell death and resistance3				A lesion mimic mutant for resistance to rice blast fungus. Dominant. Many small brownish lesions spreading over the entire leaf surface appear and become visible around 20 days after sowing. PO:0009025; leaf.	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic			GR:0060114			GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
3026	ENOD40	OsENOD40	EARLY NODULIN	rice early nodulin	EARLY NODULIN			This gene isolated from cultivated rice, Oryza sativa is homologues to early nodulin gene, ENOD40 of legume that plays a pivotal role in the organogenesis of root nodules. The expression of OsENOD40 is confined to stems. AB024054.	 Biochemical character,  Vegetative organ - Root						GO:0009878 - nodule morphogenesis		
3027	OBENOD40	ObENOD40	RICE EARLY NODULIN	rice early nodulin	RICE EARLY NODULIN			This gene isolated from Oryza brachyantha, is homologous to ENOD40 of legumes that plays a pivotal role in the organogenesis of root nodules. AB024055.	 Biochemical character,  Vegetative organ - Root						GO:0009878 - nodule morphogenesis		
3028	SPK	CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23	SEED-SPECIFIC PROTEIN KINASE	"seed-specific protein kinase, \"Calcium-dependent protein kinase, isoform 1\", Calcium-dependent protein kinase isoform 1, calcium-dependent protein kinase 23"	SEED-SPECIFIC PROTEIN KINASE		10	This gene encodes a calcium-dependent seed-specific protein kinase. The genomic region consists of SPK-A and SPK-B, both of them being located on different chromosomes (Chrom. 6 and Chrom. 10). EC=2.7.11.1 AC073166, AE017116, D13436. E07613. P53682. PO:0009089; endosperm ; PO:0009010; seed. GRO:0007046; 07-milk stage. LOC_Os10g39420. KC610844-KC610855 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os10g0539600	LOC_Os10g39420.1	GR:0080031			GO:0019252 - starch biosynthetic process, GO:0016020 - membrane, GO:0010857 - calcium-dependent protein kinase activity, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005509 - calcium ion binding, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0031225 - anchored to membrane, GO:0005515 - protein binding	TO:0002653 - endosperm storage protein content, TO:0000653 - seed development trait, TO:0000696 - starch content, TO:0002658 - starch grain synthesis, TO:0000249 - leaf senescence, TO:0000328 - sucrose content, TO:0000718 - wrinkled seed, TO:0000469 - days to maturity, TO:0000100 - shrunken endosperm	PO:0009010 - seed , PO:0009089 - endosperm , PO:0007633 - endosperm development stage 
3030	CDPK7	OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13	CALCIUM-DEPENDENT PROTEIN KINASE 7	calcium dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 7		3	This gene is a positive regulator commonly involved in the tolerance to cold and salt/drought stresses. P53684, AY158077, X81393, AF048691, AB078634. OsCDPK13 in Yang et al. 2003 and Kakar et al. 2015. LOC_Os03g03660.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0128700	LOC_Os03g03660.4, LOC_Os03g03660.3, LOC_Os03g03660.2, LOC_Os03g03660.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0016020 - membrane, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0009609 - response to symbiotic bacterium	TO:0000166 - gibberellic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0006085 - root meristem , PO:0000016 - lateral root primordium , PO:0005029 - root primordium , PO:0007633 - endosperm development stage 
3031	NAS1	OsNAS1	NICOTIANAMINE SYNTHASE 1	rice nicotianamine synthase1, NA synthase gene 1, Nicotianamine synthase 1, S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 1	NICOTIANAMINE SYNTHASE 1		3	The nicotianamine is a crucial components of the iron acqusition apparatus of graminaeceous plant. AB046401. D24418. AB021746. EC=2.5.1.43 LOC_Os03g19427. A2XFU5(indica). Q0DSH9(japonica). TO:0006049: iron concentration. TO:0006053: zinc concentration. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0307300	LOC_Os03g19427.1	GR:0080047			GO:0009739 - response to gibberellin stimulus, GO:0010039 - response to iron ion, GO:0046688 - response to copper ion, GO:0030418 - nicotianamine biosynthetic process, GO:0008652 - cellular amino acid biosynthetic process, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0046394 - carboxylic acid biosynthetic process, GO:0030410 - nicotianamine synthase activity, GO:0006826 - iron ion transport	TO:0000021 - copper sensitivity, TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000495 - chlorophyll content	PO:0000071 - companion cell , PO:0000256 - root hair cell , PO:0000258 - root cortex , PO:0005020 - vascular bundle , PO:0006036 - root epidermis , PO:0000272 - protoxylem , PO:0004001 - bulliform cell , PO:0020104 - leaf sheath , PO:0020121 - lateral root , PO:0009025 - vascular leaf , PO:0020123 - root cap , PO:0020124 - root stele , PO:0006203 - pericycle , PO:0009005 - root 
3032	NAS2	OsNAS2	NICOTIANAMINE SYNTHASE 2	rice nicotianamine synthase2, NA synthase gene 2, Nicotianamine synthase 2, S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 2, NA synthase 2	NICOTIANAMINE SYNTHASE 2		3	The nicotianamine is a crucial component of the iron acquisition apparatus of graminaceous plants. EC=2.5.1.43 Os03g0307200. LOC_Os03g19420. A2XFU5(indica). Q10MI9(japonica). AU176507. PO:0020124; root stele ; PO:0006203; pericycle ; PO:0000258; root cortex ; PO:0006036; root epidermis ; PO:0009010; seed ; PO:0005772; exodermis ; PO:0020121; lateral root ; PO:0009006; shoot ; PO:0000272; protoxylem ; PO:0005020; vascular bundle ; PO:0009005; root ; PO:0009025; leaf. TO:0006049: iron concentration. TO:0006053: zinc concentration. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0307200	LOC_Os03g19420.2	GR:0080048			GO:0006826 - iron ion transport, GO:0016192 - vesicle-mediated transport, GO:0009739 - response to gibberellin stimulus, GO:0030418 - nicotianamine biosynthetic process, GO:0046688 - response to copper ion, GO:0010106 - cellular response to iron ion starvation, GO:0010039 - response to iron ion, GO:0030410 - nicotianamine synthase activity, GO:0055072 - iron ion homeostasis	TO:0000495 - chlorophyll content, TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000021 - copper sensitivity	PO:0000258 - root cortex , PO:0000272 - protoxylem , PO:0005020 - vascular bundle , PO:0009005 - root , PO:0009006 - shoot system , PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0005772 - exodermis , PO:0020124 - root stele , PO:0020121 - lateral root , PO:0006203 - pericycle , PO:0006036 - root epidermis 
3035	PNH1	OsPNH1	PINHEAD 1	Oryza sativa pinhead1, PINHEAD1, ZLL/PNH homologous protein, Protein argonaute PNH1, Protein PINHEAD homolog 1, pinhead1, OsPINHEAD1	ZLL/PNH HOMOLOGOUS PROTEIN		6	This is a rice homologue of PINHEAD/ZWILLE (PNH/Zll) of Arabidopsis, which plays important roll in the formation of the shoot apical meristem (SAM) and in leaf adaxial cell specification. OsPNH1 is located on chromosome 6 between RFLP markers G122 and G1314A. LOC_Os06g39640. AB081950. Q69VD5. PO:0000225; peripheral zone ; PO:0006019; leaf abaxial epidermis ; PO:0000230; inflorescence meristem ; PO:0004726; adaxial side of leaf primordium ; PO:0006023; bundle sheath ; PO:0009015; vascular tissue ; PO:0000036; leaf vascular system ; PO:0006018; leaf adaxial epidermis. GRO:0007139; A-vegetative stage ; GRO:0007190; panicle stage PA6.	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Leaf	Os06g0597400	LOC_Os06g39640.1	GR:0080013			GO:0005737 - cytoplasm, GO:0019827 - stem cell maintenance, GO:0031047 - gene silencing by RNA, GO:0048366 - leaf development, GO:0003676 - nucleic acid binding, GO:0010073 - meristem maintenance, GO:0003743 - translation initiation factor activity	TO:0000472 - vascular bundle number, TO:0000207 - plant height, TO:0006017 - meristem identity, TO:0000492 - leaf shape	PO:0000036 - leaf vascular system , PO:0000225 - peripheral zone , PO:0000230 - inflorescence meristem , PO:0004726 - adaxial side of leaf primordium , PO:0006018 - leaf adaxial epidermis , PO:0006019 - leaf abaxial epidermis , PO:0006023 - bundle sheath , PO:0009015 - portion of vascular tissue 
3036	TERT	OsTERT	TELOMERASE REVERSE TRANSCRIPTASE	rice telomerase reverse transcriptase, Telomerase reverse transcriptase	TELOMERASE REVERSE TRANSCRIPTASE		12	EC=2.7.7.49 Q8LKW0.AF288216. KC611015-KC611027 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os12g0293100	LOC_Os12g19549.2, LOC_Os12g19549.1				GO:0005739 - mitochondrion, GO:0005634 - nucleus, GO:0003721 - telomeric template RNA reverse transcriptase activity, GO:0000781 - chromosome, telomeric region, GO:0006278 - RNA-dependent DNA replication, GO:0003723 - RNA binding, GO:0003677 - DNA binding		
3037	BRD1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1	BRASSINOSTEROID-DEFICIENT DWARF 1	brassinosteroid-dependent1, brassinosteroid-dependent 1, brassinosteroid-deficient dwarf1, brassinosteroid-deficient dwarf 1, Cytochrome P450 85A1, C6-oxidase, BR-6-oxidase, Dwarf protein, cytochrome P450 CYP85A4, brassinosteroid deficient1, BR-deficient dwarf1, BR-deficient dwarf 1	CYTOCHROME P450 85A1	brd1, brd1-1, brd1-2, brd1-3	3	LOC_Os03g40540. AB084385. Q8GSQ1. A dwarf due to defect in brassinosteroids (BRs) synthesis. This dwarf has characteristics as erect leaves, defects in skotomorhogenesis (dark-adapted morphogenesis), and the ability of exogenous brassinolide (BL) treatment to rescue the dwarf phenotype.Deficiency in this gene causes a dwarf due to brassinosteroid (BR) biosynthetic defect. 	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os03g0602300	LOC_Os03g40540.1	GR:0080017			GO:0001578 - microtubule bundle formation, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0022900 - electron transport chain, GO:0016020 - membrane, GO:0080113 - regulation of seed growth, GO:0055114 - oxidation reduction, GO:0020037 - heme binding, GO:0009647 - skotomorphogenesis, GO:0007275 - multicellular organismal development, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009719 - response to endogenous stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0007165 - signal transduction, GO:0016132 - brassinosteroid biosynthetic process, GO:0010268 - brassinosteroid homeostasis, GO:0009637 - response to blue light, GO:0005506 - iron ion binding	TO:0000391 - seed size, TO:0000206 - leaf angle, TO:0000085 - leaf rolling, TO:0000145 - internode length, TO:0002676 - brassinosteroid content, TO:0000642 - leaf sheath diameter, TO:0000135 - leaf length, TO:0000207 - plant height, TO:0000370 - leaf width, TO:0000576 - stem length, TO:0000159 - blue light sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000492 - leaf shape	
3039	qLT-8	qLT-8	luster (QTL)-8	luster (QTL)-8			8	This QTL controls a luster of cooked rice grain, one of the cooking quality of rice grain, being located on chromosome 8 between RFLP markers XNpb41 and R727.	 Seed - Morphological traits - Endosperm								
3040	qTD-6	qTD-6	tenderness (QTL)-6	tenderness (QTL)-6			6	This QTL controls tenderness of cooked rice grain, one of the eating quality of rice grain, being located on chromosome 6 in the vicinity of RFLP marker C688.	 Seed - Morphological traits - Endosperm								
3041	qTD-8	qTD-8	tenderness (QTL)-8	tenderness (QTL)-8			8	This QTL controls tenderness of cooked rice grain, one of the eating quality of rice grain, being located on chromosome 8 between RFLP markers XNpb41 and R727.	 Seed - Morphological traits - Endosperm								
3042	qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6)	qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6)	integrated value of organoleptic evaluation (QTL)-6-1(t)	integrated value of organoleptic evaluation (QTL)-6-1(t)			6	This QTL controls an integrated value of organoleptic evaluation, being located on chromosome 6 between RFLP marker XNpb209 and C688.	 Character as QTL - Grain quality								
3043	qIVOE-8	qIVOE-8	integrated value of organoleptic evaluation (QTL)-8	integrated value of organoleptic evaluation (QTL)-8			8	This QTL controls an integrated value of organoleptic evalustion, being located on chromosome 8 between RFLP markers XNpb41 and R727.	 Seed - Morphological traits - Endosperm								
3044	qAC-8	qAC-8	amylose content (QTL)-8	amylose content (QTL)-8			8	This QTL controls amylose content of rice grain, being located on chromosome 8 between RFLP markers XNpb41 and R727.	 Seed - Morphological traits - Endosperm								
3045	qRRE-1	qRRE-1	relative root elongation (Al-tolerance) (QTL)-1	relative root elongation (Al-tolerance) (QTL)-1			1	This QTL controls Al toxicity tolerance measured by relative root elongation (RRE) under Al stress to that of control. This QTL is located on chromosome 1 between markers X317 and X252.	 Tolerance and resistance - Stress tolerance								
3046	qRRE-5	qRRE-5	relative root elongation (Al-tolerance) (QTL)-5	relative root elongation (Al-tolerance) (QTL)-5			5	This QTL controls Al toxicity tolerance measured by relative root elongation under Al-stress (RRE) to that of control. This QTL is located on chromosome 5 between markers C246 and X297.	 Tolerance and resistance - Stress tolerance								
3047	qRRE-8	qRRE-8	relative root elongation (Al-tolerance) (QTL)-8	relative root elongation (Al-tolerance) (QTL)-8			8	This QTL controls Al toxicity tolerance measured by relative root elongation under Al stress (RRE) to that of control. This QTL is located on chromosome 8 between markers C166 and C1121.	 Tolerance and resistance - Stress tolerance								
3048	qRRE-9	qRRE-9	relative root elongation (Al-tolerance) (QTL)-9	relative root elongation (Al-tolerance) (QTL)-9			9	This QTL controls Al toxicity tolerance measured by relative root elongation (RRE) under Al stress to that of control. This QTL is located on chromosome 9 between markers R1751 and X13.	 Tolerance and resistance - Stress tolerance								
3049	qRRE-11	qRRE-11	relative root elongation (Al-tolerance) (QTL)-11	relative root elongation (Al-tolerance) (QTL)-11			11	This QTL controls Al toxicity tolerance measured by relative root elongation (RRE) under Al stress to that of control. This QTL is located on chromosome 11 between markers C1172 and G1465.	 Tolerance and resistance - Stress tolerance								
3050	qLEI-3 (qLEI 3)	qLEI-3 (qLEI 3)	lowest elongated internode (QTL)-3	lowest elongated internode (QTL)-3			3	This QTL controls the position of the lowest elongated internode in relation to floating ability.  This QTL is located on chromosome 3 between markers RM282 and XNpb144.	 Vegetative organ - Culm								
3051	qLEI-12 (qLEI 12)	qLEI-12 (qLEI 12)	lowest elongated internode (QTL)-12	lowest elongated internode (QTL)-12			12	This QTL controls the position of the lowest elongated internode in relation to floating ability, being located on chromosome 12 between markers RM5479 and C901.	 Vegetative organ - Culm								
3052	qRIE-1 (qRIE 1)	qRIE-1 (qRIE 1)	rate of internodal elongation (QTL)-1	rate of internodal elongation (QTL)-1			1	This QTL controls the rate of internodal elongation in relation to floating ability, being located on chromosome 1 between markers C86 and XNpb113.	 Vegetative organ - Culm								
3053	qRIE-12 (qRIE 12)	qRIE-12 (qRIE 12)	rate of internodal elongation (QTL)-12	rate of internodal elongation (QTL)-12			12	This QTL controls the rate of internodal elongation in relation to floating ability, being located on chromosome 12 between markers XNpb402 and RM7018.	 Vegetative organ - Culm								
3054	GRH5	Grh5	GREEN RICE LEAFHOPPER RESISTANCE 5	Green rice leafhopper resistance5, Green rice leafhopper resistance 5, Green rice leafhopper resistance-5			8	Grh5 introgressed from O. rufipogon, is resistant to rice green leafhopper, being located on the distal region in long arm of chromosome 8 between RFLP markers RM1615 and RM6845, and tightly linked to RM3754 and RM3761. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0061303			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
3055	qGWL-6	qGWL-6	grade of watery lesions (QTL)-6	grade of watery lesions (QTL)-6			6	This QTL controls the grade of watery lesions in relation to ovicidal response to whitebacked and brown planthoppers. This QTL is located on the short arm of chromosome 6 between markers R1954 and L688.	 Tolerance and resistance - Insect resistance								
3056	qGWL-10	qGWL-10	grade of watery lesions (QTL) -10	grade of watery lesions (QTL) -10			10	This QTL controls the grade of watery lesion in relation to ovicidal response to whitebacked planthopper. This QTL is located on the long arm of chromosome 10 between markers C809 and G127.	 Tolerance and resistance - Insect resistance								
3057	qGWL-5	qGWL-5	grade of watery lesions (QTL)-5	grade of watery lesions (QTL)-5			5	This QTL controls the grade of watery lesions in relation to ovicidal response to brown planthopper. This QTL is located on the long arm of chromosome 5 between markers C1268 and R1553.	 Tolerance and resistance - Insect resistance								
3058	qEM-3	qEM-3	egg mortality (QTL)-3	egg mortality (QTL)-3			3	This QTL controls egg mortality in relation to ovicidal effect to whitebacked planthopper. This QTL is located on the long arm of chromosome 3 between markers G332 and R19,	 Tolerance and resistance - Insect resistance								
3059	qEM-6	qEM-6	egg mortality (QTL)-6	egg mortality (QTL)-6			6	This QTL controls egg mortality in relation to ovcidal response to whitebacked and brown planthoppers. This QTL is located on the short arm of chromosome 6 between markers R1954 and L688.	 Tolerance and resistance - Insect resistance								
3060	qEM-7-1	qEM-7-1	egg mortality (QTL)-7-1	egg mortality (QTL)-7-1			7	This QTL controls egg mortality in relation to ovicial response to whitebacked planthopper. This QTL is located on the short arm of chromosome 7 between markers C1057 and R565.	 Tolerance and resistance - Insect resistance								
3061	qEM-7-2	qEM-7-2	egg mortality (QTL)-7-2	egg mortality (QTL)-7-2			7	This QTL controls egg mortality in relation to ovicial response to whitebacked planthopper. This QTL is located on the long arm of chromosome 7 between markers C451 and R1357.	 Tolerance and resistance - Insect resistance								
3062	qEM-8	qEM-8	egg mortality (QTL)-8	egg mortality (QTL)-8			8	This QTL controls egg mortality in relation to ovicidal response to whitebacked planthopper. This QTL is located on the short arm of chromosome 8 between markers C166 and R902.	 Tolerance and resistance - Insect resistance								
3063	qEM-2	qEM-2	egg mortality (QTL)-2	egg mortality (QTL)-2			2	This QTL controls egg mortality in relation to ovicidal response to brown planthopper, being located on chromosome 2 between markers R712 and R1843.	 Tolerance and resistance - Insect resistance								
3065	AMT2;1	OsAMT2;1, AMT2-1, OsAMT2.1	AMMONIUM TRANSPORTER 2;1	Ammonium transporter 2 member 1	AMMONIUM TRANSPORTER 2;1		5	ammonium tansporter. Q84KJ7. AB051864, AB083581.	 Biochemical character	Os05g0468700	LOC_Os05g39240.1				GO:0016020 - membrane, GO:0015696 - ammonium transport, GO:0005886 - plasma membrane, GO:0008519 - ammonium transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
3066	AMT3;1	OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2	AMMONIUM TRANSPORTER 3 MEMBER 1	Ammonium transporter 3 member 1	AMMONIUM TRANSPORTER 3 MEMBER 1		1	Q84KJ6. AB083582, AP003235. OsAMT3;1 is the rice ortholog of the Lotus and soybean mycorrhiza-specific NH4+ transporters LjAMT2;2 and GmAMT4;1, respectively (Perez-Tienda et al. 2014). OsAMT2;2 and OsAMT3;1 in Wang et al. 2012 and Yang et al. 2014.	 Biochemical character	Os01g0870300	LOC_Os01g65000.1, LOC_Os01g64990.2, LOC_Os01g64990.1				GO:0016021 - integral to membrane, GO:0008519 - ammonium transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0015696 - ammonium transport		
3067	AMT4;1	OsAMT4, OsAMT4;1, AMT4-1	AMMONIUM TRANSPORTER 4;1	Putative ammonium transporter 4 member 1	AMMONIUM TRANSPORTER 4		3	ammonium transporter. Q10CV4. AC091811.	 Biochemical character	Os03g0749000	LOC_Os03g53780.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0008519 - ammonium transmembrane transporter activity		
3068	RPOTP	OsRpo Tp, OsRpoTp, NEP, RpoTp	RNA POLYMERASE	RNA polymerase, Nuclear-Encoded Plastid RNA Polymerase, T3/T7-like RNA polymerase	RNA POLYMERASE		6	This gene encodes phage-type RNA polymerase, being localized to plastids and mitocondria. OsRpo Tp expression occurs at an early stage of leaf development. AB120430. U34283, D24565, D23514. Y11599.	 Biochemical character	Os06g0652000	LOC_Os06g44230.1				GO:0006350 - transcription, GO:0009507 - chloroplast, GO:0006351 - transcription, DNA-dependent, GO:0003899 - DNA-directed RNA polymerase activity, GO:0009536 - plastid, GO:0003677 - DNA binding		
3069	TPC1	OsTPC1, Tpc1, OsCC1, OsCL1 pore	TWO-PORE CHANNEL 1	Two pore calcium channel protein 1, Two-pore channel 1, Voltage-dependent calcium channel protein TPC1	TWO-PORE CHANNEL 1		1	OsTPC1 functions as a Ca2+-permiable channel involved in the regulation of growth and development. Ca2+-permiable channel. Q5QM84. LOC_Os01g48680.	 Biochemical character,  Vegetative organ - Culm	Os01g0678500	LOC_Os01g48680.2, LOC_Os01g48680.1	GR:0010807			GO:0006952 - defense response, GO:0009626 - plant-type hypersensitive response, GO:0005886 - plasma membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0032940 - secretion by cell, GO:0006816 - calcium ion transport, GO:0016021 - integral to membrane, GO:0005216 - ion channel activity, GO:0005262 - calcium channel activity, GO:0005245 - voltage-gated calcium channel activity, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0005509 - calcium ion binding, GO:0005244 - voltage-gated ion channel activity, GO:0006811 - ion transport, GO:0006812 - cation transport, GO:0005739 - mitochondrion, GO:0005261 - cation channel activity	TO:0000207 - plant height	
3070	EIN2	OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7	ETHYLENE-INSENSITIVE PROTEIN 2	Ethylene-insensitive protein 2, maohuzi7, maohuzi 7	ETHYLENE-INSENSITIVE PROTEIN 2 	ein2, mhz7-2/osein2, mhz7/osein2-1, osein2, mhz7, mhz7-1, mhz7-2, mhz7-3, mhz7-4, ein2-1, Osein2-1, Osein2-2	7	LOC_Os07g06130. This gene is a positive component of the ethylene-signaling pathway in rice. ethylene signaling transducer. AY396568. Os07g0155600(IRGSP1) by RAP. GO:1901001: negative regulation of response to salt stress.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0155600	LOC_Os07g06130.3, LOC_Os07g06130.2, LOC_Os07g06130.1				GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0031349 - positive regulation of defense response, GO:0010150 - leaf senescence, GO:0051607 - defense response to virus, GO:0009873 - ethylene mediated signaling pathway, GO:0052319 - regulation of phytoalexin biosynthetic process, GO:0005215 - transporter activity	TO:0000148 - viral disease resistance, TO:0000397 - grain size, TO:0000615 - abscisic acid sensitivity, TO:0000544 - mesocotyl length, TO:0000227 - root length, TO:0001007 - coleoptile length, TO:0000249 - leaf senescence, TO:0000173 - ethylene sensitivity, TO:0000112 - disease resistance, TO:0000429 - salt sensitivity	
3071	NHX1	OsNHX1	NA+/H+ ANTIPORTER	Na+/H+ antiporter, NHX-type antiporter 1	NA+/H+ ANTIPORTER		7	This gene encodes a vacuolar (Na+m K+)/H+ antiporter. Overexpression of OsNHX1 under high concentration of NaCl and KCl improves the salt tolerance. AB021878. KC610941-KC610951 (O. sativa and wild rice species, partial cds).	 Tolerance and resistance - Stress tolerance	Os07g0666900	LOC_Os07g47100.3, LOC_Os07g47100.2, LOC_Os07g47100.1				GO:0015385 - sodium:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0055075 - potassium ion homeostasis, GO:0055078 - sodium ion homeostasis	TO:0000525 - sodium to potassium content ratio, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
3072	AOS1	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2	ALLENE OXIDE SYNTHASE 1	"allene oxide synthase1, \"Allene oxide synthase 1, chloroplastic\", Cytochrome P450 74A1, Hydroperoxide dehydrase 1, allene oxide synthase-1"	ALLENE OXIDE SYNTHASE 1		3	This gene encode allene oxide synthase (AOS), a key enzyme for the biosynthesis of jasmoric acid (JA). The transcrips of OsAOS1 is up-regulated by red and far-red light in seedling shoots. This photoregulation participates in the phytochrome-mediated inhibition of rice coleoptile growth. EC=4.2.1.92 Q7Y0C8. AB116527. KC609133-KC609144 (O. sativa and wild rice species, partial ads). OsAOS2 in Kobayashi et al. 2016.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0767000	LOC_Os03g55800.1				GO:0009055 - electron carrier activity, GO:0009536 - plastid, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0047987 - hydroperoxide dehydratase activity, GO:0009695 - jasmonic acid biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0031408 - oxylipin biosynthetic process, GO:0031969 - chloroplast membrane, GO:0051607 - defense response to virus	TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance	
3073	AOS4	OsAOS4, CYP74A4, OsHPL1, HPL1	ALLENE OXIDE SYNTHASE 4	allene oxide synthase4, Allene oxide synthase 4, Cytochrome P450 74A4, Hydroperoxide dehydrase 4, hydroperoxide lyase 1, hydroperoxide lyase	ALLENE OXIDE SYNTHASE 4		2	EC=4.2.1.92 Q6Z6K9.	 Biochemical character	Os02g0218800	LOC_Os02g12690.1				GO:0005739 - mitochondrion, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009611 - response to wounding, GO:0009620 - response to fungus, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0009753 - response to jasmonic acid stimulus, GO:0020037 - heme binding, GO:0031408 - oxylipin biosynthetic process, GO:0047987 - hydroperoxide dehydratase activity, GO:0009941 - chloroplast envelope, GO:0009978 - allene oxide synthase activity, GO:0016829 - lyase activity, GO:0010287 - plastoglobule		
3074	GRF1	OsGRF1	GROWTH-REGULATING FACTOR 1	growth-regulating factor1	GROWTH-REGULATING FACTOR 1		2	This gene encodes a transcriptional regulator and may be involved in regulating vegetative growth in rice. BK004856.	 Biochemical character	Os02g0776900	LOC_Os02g53690.1				GO:0016563 - transcription activator activity		
3075	MADS2	OsMADS2, RMADS219, NMADS1, PI2, nmads1	MADS BOX GENE 2	MADS box gene2, MADS-box transcription factor 2, GLOBOSA(GLO)-like MADS-box gene-2	MADS-BOX TRANSCRIPTION FACTOR 2		1	AF095645. JF312028, JF312030. Q40702. a rice PISTILLATA ortholog. PO:0009046; flower. PISTILLATA-like MADS box protein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os01g0883100	LOC_Os01g66030.2, LOC_Os01g66030.1	GR:0061386			GO:0003700 - transcription factor activity, GO:0030154 - cell differentiation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding	TO:0000622 - flower development trait, TO:0000580 - cytoplasmic male sterility, TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower , PO:0007615 - flower development stage 
3076	MADS4	OsMADS4, PI1	MADS BOX GENE 4	MADS box gene4, MADS-box transcription factor 4, GLOBOSA(GLO)-like MADS-box gene-4	MADS-BOX TRANSCRIPTION FACTOR 4		5	Q40703. PO:0009046; flower. a rice PI orthologue. JF312006, JF312008.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0423400	LOC_Os05g34940.3, LOC_Os05g34940.2, LOC_Os05g34940.1	GR:0061387			GO:0009908 - flower development, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0030154 - cell differentiation	TO:0000622 - flower development trait, TO:0000499 - flower anatomy and morphology trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009046 - flower , PO:0007615 - flower development stage 
3077	MADS5	OsMADS5, FDRMADS2	MADS BOX GENE 5	MADS box gene5, MADS-box transcription factor 5	MADS-BOX TRANSCRIPTION FACTOR 5		6	A2Y9P0(indica), Q0DEB8(japonica). a SEP-like gene. LOC_Os06g06750.	 Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os06g0162800	LOC_Os06g06750.1				GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0030154 - cell differentiation, GO:0009908 - flower development	TO:0000245 - pollen free, TO:0000373 - inflorescence anatomy and morphology trait, TO:0002616 - flowering time	PO:0001048 - palea development stage , PO:0001049 - lodicule development stage , PO:0001047 - lemma development stage 
3078	MFO1	OsMADS6, MADS6, OsMFO1	MOSAIC FLORAL ORGANS 1	MADS box gene6, AGL6-like MADS Box gene, mosaic floral organs 1	MADS-BOX TRANSCRIPTION FACTOR 6	mfo1-1, mfo1-2, osmads6, mfo1, Osmads6-1, Osmads6-2, Osmads6-5, mads6-1, mads6-5	2	LOC_Os02g45770. Q6EU39. U78782. GQ496635, GQ496636, GQ496637 (wild rice species). MFO1 regulates floral organ identities and the establishment and determinacy of floral meristem.  	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0682200 	LOC_Os02g45770.1				GO:0006350 - transcription, GO:0010093 - specification of floral organ identity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009909 - regulation of flower development, GO:0010229 - inflorescence development, GO:0009908 - flower development, GO:0030154 - cell differentiation, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005515 - protein binding, GO:0005634 - nucleus	TO:0000621 - inflorescence development trait, TO:0006022 - floral organ development trait	PO:0001083 - inflorescence development stage , PO:0007615 - flower development stage , PO:0020003 - plant ovule , PO:0025477 - floral organ primordium 
3079	MADS7	OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45	MADS BOX GENE 7	MADS box gene7, Protein AGAMOUS-like 6, MADS-box protein 45, MADS box gene45, MADS-box transcription factor 7, Protein AGAMOUS-like 6	MADS-BOX TRANSCRIPTION FACTOR 7		8	P0C5B0(indica), Q0J466(japonica). U78891. a SEP3-like gene. LOC_Os08g41950.	 Reproductive organ - Heading date,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os08g0531700	LOC_Os08g41950.2, LOC_Os08g41950.1				GO:0010582 - floral meristem determinacy, GO:0030154 - cell differentiation, GO:0003700 - transcription factor activity, GO:0009908 - flower development, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010229 - inflorescence development, GO:0043565 - sequence-specific DNA binding	TO:0000245 - pollen free, TO:0002616 - flowering time, TO:0000373 - inflorescence anatomy and morphology trait, TO:0006012 - carpel anatomy and morphology trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0006023 - lodicule development trait, TO:0000215 - stamen anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0006009 - lodicule anatomy and morphology trait	PO:0001083 - inflorescence development stage , PO:0025585 - floral organ formation stage , PO:0001048 - palea development stage , PO:0001047 - lemma development stage , PO:0001049 - lodicule development stage 
3081	MADS13	OsMADS13, MAF1, RMADS206	MADS BOX GENE 13	MADS box gene13, MADS-box transcription factor 13	MADS-BOX TRANSCRIPTION FACTOR 13	osmads13-1, osmads13-2, osmads13-3, mads13-3	12	AF151693. Q2QW53. GRO:0007172; embryo stage EM6 ; GRO:0007173; embryo stage EM4 ; GRO:0007175; embryo stage EM8 ; GRO:0007169; embryo stage EM5. ortholog of Arabidopsis STK (SEEDSTICK). 	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os12g0207000	LOC_Os12g10540.5, LOC_Os12g10540.4, LOC_Os12g10540.3, LOC_Os12g10540.2, LOC_Os12g10540.1	GR:0080041			GO:0048481 - ovule development, GO:0006350 - transcription, GO:0010229 - inflorescence development, GO:0005515 - protein binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0048283 - indeterminate inflorescence morphogenesis, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000358 - female sterility, TO:0000223 - pistil anatomy and morphology trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3082	RAP1B	MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10	RICE APETALA 1B 	MADS box gene14, MADS-box transcription factor 14, Protein APETALA1-like B, Protein AGAMOUS-like 10	MADS-BOX TRANSCRIPTION FACTOR 14	osmads14	3	AB041020. P0C5B1(indica), Q10CQ1(japonica). 	 Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0752800	LOC_Os03g54160.2, LOC_Os03g54160.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0030154 - cell differentiation, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription	TO:0000622 - flower development trait	PO:0007615 - flower development stage 
3085	MADS17	OsMADS17, NMADS3, RMADS213, nmads3	MADS BOX GENE 17	MADS box gene17, MADS-box transcription factor 17	MADS-BOX TRANSCRIPTION FACTOR 17		4	Q7XUN2. AF109153. AF095646. GQ496628, GQ496629, GQ496630 (wild rice species). LOC_Os04g49150.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0580700	LOC_Os04g49150.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0005515 - protein binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3086	MADS18	OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28	MADS BOX GENE 18	MADS box gene18, MADS-box transcription factor 18, MADS-box protein 2, MADS-box protein 28	MADS-BOX TRANSCRIPTION FACTOR 18		7	A2YNI2(indica). Q0D4T4(japonica). PO:0000042; shoot borne root ; PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0006329; floret meristem (sensu Poaceae) ; PO:0009001; fruit ; PO:0009049; inflorescence ; PO:0006318; floret (sensu Poaceae) ; PO:0006215; leaf aerenchyma ; PO:0009005; root ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007165; leaf stage P5 ; GRO:0007059; 2.01-first leaf through coleoptile ; GRO:0007147; 4.1-panicle initiation stage. LOC_Os07g41370.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os07g0605200	LOC_Os07g41370.2, LOC_Os07g41370.1	GR:0080025			GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0045449 - regulation of transcription, GO:0048830 - adventitious root development, GO:0030154 - cell differentiation, GO:0010093 - specification of floral organ identity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0006350 - transcription, GO:0005515 - protein binding, GO:0005634 - nucleus	TO:0000145 - internode length, TO:0000207 - plant height, TO:0002616 - flowering time	PO:0000042 - shoot-borne root , PO:0006215 - leaf aerenchyma , PO:0009082 - spikelet floret , PO:0000229 - flower meristem , PO:0009001 - fruit , PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
3087	MADS20	OsMADS20	MADS BOX GENE 20	MADS box gene20, MADS-box transcription factor 20	MADS-BOX TRANSCRIPTION FACTOR 20		12	Q2QQA3. AY250075.	 Reproductive organ - panicle,  Other	Os12g0501700	LOC_Os12g31748.2, LOC_Os12g31748.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3088	MADS21	OsMADS21, RMADS207	MADS BOX GENE 21	MADS box gene21, MADS-box transcription factor 21	TRANSCRIPTION FACTOR MADS21		1	AY551913. Q8RU31.	 Reproductive organ - panicle,  Other	Os01g0886200	LOC_Os01g66290.2, LOC_Os01g66290.1				GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3089	MADS22	OsMADS22, RMD1	MADS BOX GENE 22	MADS box gene22, MADS-box transcription factor 22, STMADS11-like	MADS-BOX TRANSCRIPTION FACTOR 22	osmads22-1, osmads22-2	2	Q9XJ66. AB003322. PO:0009051; spikelet ; PO:0009036; lodicule ; PO:0004705; stamen primordium ; PO:0000230; inflorescence meristem ; PO:0009049; inflorescence ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae) ; PO:0006004; upper glume ; PO:0009038; palea ; PO:0009009; embryo. GRO:0007158; spikelet development ; GRO:0007147; 4.1-panicle initiation stage. SHORT VEGETATIVE PHASE (SVP) subfamily.	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os02g0761000	LOC_Os02g52340.1	GR:0080021			GO:0010229 - inflorescence development, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0030154 - cell differentiation, GO:0009908 - flower development, GO:0007275 - multicellular organismal development	TO:0000621 - inflorescence development trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0001000 - glume cover, TO:0000670 - floret number, TO:0000485 - sterility related trait	PO:0000230 - inflorescence meristem , PO:0001083 - inflorescence development stage , PO:0009051 - spikelet , PO:0009049 - inflorescence , PO:0004705 - stamen primordium , PO:0006004 - upper glume , PO:0009082 - spikelet floret , PO:0009009 - plant embryo , PO:0009036 - lodicule , PO:0009037 - lemma , PO:0009038 - palea 
3090	MADS23	OsMADS23, MADS-23	MADS BOX GENE 23	MADS box gene23, MADS-box transcription factor 23	MADS-BOX TRANSCRIPTION FACTOR 23	OsMADS23R	8	LOC_Os08g33488. Q6VAM4. one of the miR444 target genes.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os08g0431900	LOC_Os08g33488.1				GO:0006995 - cellular response to nitrogen starvation, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0051607 - defense response to virus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000148 - viral disease resistance, TO:0000168 - abiotic stress trait	
3091	MADS25	OsMADS25	MADS BOX GENE 25	MADS box gene25, MADS-box transcription factor 25	MADS-BOX TRANSCRIPTION FACTOR 25		4	Q84NC5. GO:0072593: reactive oxygen species metabolic process. GO:1902457: negative regulation of stomatal opening.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Other	Os04g0304400	LOC_Os04g23910.1				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0051512 - positive regulation of unidimensional cell growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress, GO:0010929 - positive regulation of auxin mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus	TO:0000227 - root length, TO:0000163 - auxin sensitivity, TO:0006002 - proline content, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0001013 - lateral root number, TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content	
3092	MADS26	OsMADS26, FDRMADS3, RMADS220	MADS BOX GENE 26	MADS box gene26, MADS-box transcription factor 26	MADS-BOX TRANSCRIPTION FACTOR 26		8	A2YQK9(indica), Q0J8G8(japonica). LOC_Os08g02070. GO:0080148: negative regulation of response to water deprivation. GO:1900150: regulation of defense response to fungus. GO:1900425: negative regulation of defense response to bacterium.	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os08g0112700	LOC_Os08g02070.1				GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage 
3093	MADS27	OsMADS27, MADS-27a, OsSTA66, OsMADS27a	MADS BOX GENE 27	MADS box gene27, MADS-box transcription factor 27	MADS-BOX TRANSCRIPTION FACTOR 27	OsMADS27aR	2	Q6EP49. CT835409. AY551923. LOC_Os02g36924. one of the miR444 target genes. a mature anther-preferentially expressed gene. MADS-27a in Yang et al. 2014. OsMADS27a in Wang et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os02g0579600	LOC_Os02g36924.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0006995 - cellular response to nitrogen starvation, GO:0003700 - transcription factor activity, GO:0051607 - defense response to virus, GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation	TO:0000168 - abiotic stress trait, TO:0000148 - viral disease resistance	PO:0009066 - anther 
3094	FST 	OsMADS29, MADS29, OsFST	FEMALE-STERILE 	MADS box gene29, MADS-box transcription factor 29	MADS-BOX TRANSCRIPTION FACTOR 29	fst	2	Q6H711. DQ004266. Gene Expression Omnibus database:GSE31893.	 Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Seed,  Seed - Morphological traits - Endosperm,  Other	Os02g0170300	LOC_Os02g07430.1				GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0048481 - ovule development, GO:0009755 - hormone-mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:0009960 - endosperm development, GO:0009790 - embryonic development, GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000476 - growth hormone content, TO:0000620 - embryo development trait, TO:0000358 - female sterility, TO:0002661 - seed maturation, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0007619 - ovule development stage , PO:0007633 - endosperm development stage , PO:0007631 - plant embryo stage 
3095	MADS30	OsMADS30	MADS BOX GENE 30	MADS box gene30, MADS-box transcription factor 30	MADS-BOX TRANSCRIPTION FACTOR 30	osmads30-1, osmads30-2	6	Q655V4. LOC_Os06g45650.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0667200	LOC_Os06g45650.1				GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
3096	MADS31	OsMADS31	MADS BOX GENE 31	MADS box gene31, MADS-box transcription factor 31	MADS-BOX TRANSCRIPTION FACTOR 31		4	Q84NC2.	 Other	Os04g0614100	LOC_Os04g52410.2, LOC_Os04g52410.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription		
3097	MADS32	OsMADS32, CFO1, CFO1/OsMADS32, TRI1, OsMADS32/CFO, CFO	MADS BOX GENE 32	MADS box gene32, MADS-box transcription factor 32, CHIMERIC FLORAL ORGANS 1, triangular hull 1	MADS-BOX TRANSCRIPTION FACTOR 32	cfo1, tri1, cfo	1	Q8S151. HQ711850. LOC_Os01g52680.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os01g0726400	LOC_Os01g52680.1				GO:0003700 - transcription factor activity, GO:0010093 - specification of floral organ identity, GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus	TO:0000621 - inflorescence development trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0002629 - fruit structure trait, TO:0006012 - carpel anatomy and morphology trait	PO:0001083 - inflorescence development stage 
3098	MADS33	OsMADS33	MADS BOX GENE 33	MADS box gene33, MADS-box transcription factor 33	MADS-BOX TRANSCRIPTION FACTOR 33		12	Q2QW55.	 Other	Os12g0206800	LOC_Os12g10520.2, LOC_Os12g10520.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0003700 - transcription factor activity		
3099	PAP2	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2	PANICLE PHYTOMER2	MADS box gene34, MADS-box transcription factor 34, panicle phytomer 2	MADS-BOX TRANSCRIPTION FACTOR 34	pap2-1, los, osmads34-1, osmads34-2	3	Q6Q9H6. LOC_Os03g54170. TO:0000869: glume anatomy and morphology trait.	 Reproductive organ - Heading date,  Reproductive organ - Inflorescence,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0753100	LOC_Os03g54170.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0010229 - inflorescence development	TO:0002726 - sterile lemma shape, TO:0000050 - inflorescence branching, TO:0000621 - inflorescence development trait, TO:0002759 - grain number, TO:0000358 - female sterility	PO:0001083 - inflorescence development stage 
3100	MADS35	OsMADS35	MADS BOX GENE 35	MADS box gene35	MADS-BOX TRANSCRIPTION FACTOR 35				 Other						GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent		
3101	MADS36	OsMADS36	MADS BOX GENE 36	MADS box gene36	MADS-BOX TRANSCRIPTION FACTOR 36				 Other						GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
3102	MADS47	OsMADS47, OsMDP1, MDP, MDP1	MADS BOX GENE 47	MADS box gene47, MADS-domain-contaiing protein1, MADS-domain-containing protein 1, MADS-box transcription factor 47, MADS-DOMAIN-CONTAIING PROTEIN1, MADS domain protein 1	MADS-BOX TRANSCRIPTION FACTOR 47		3	LOC_Os03g08754. AY345221, AC125471, AJ536158. Q5K4R0. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed ; PO:0020033; coleoptile ; PO:0020142; stem internode ; PO:0006012; leaf collar ; PO:0009005; root ; PO:0003003; primary root elongation zone ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007235; 1.3-coleoptile emergence stage. SHORT VEGETATIVE PHASE (SVP) subfamily. TO:0000816: inflorescence bract anatomy and morphology trait. a downstream gene of OsJMJ706.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0186600	LOC_Os03g08754.2, LOC_Os03g08754.1	GR:0080019			GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0009742 - brassinosteroid mediated signaling	TO:0000240 - sterile lemma length, TO:0006022 - floral organ development trait, TO:0000621 - inflorescence development trait, TO:0000401 - plant growth hormone sensitivity, TO:0000227 - root length, TO:0000206 - leaf angle	PO:0001083 - inflorescence development stage , PO:0003003 - obsolete primary root elongation zone , PO:0006012 - leaf collar , PO:0009005 - root , PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020033 - coleoptile , PO:0020142 - stem internode 
3103	MADS50	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208	MADS BOX GENE 50	MADS box gene50, MADS-box transcription factor 50, Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like, Protein AGAMOUS-like 20	MADS-BOX TRANSCRIPTION FACTOR 50	osmads50, osmads50-1, osmads50-2	3	This gene is a flowering activator. Q9XJ60.	 Reproductive organ - Heading date,  Reproductive organ - panicle,  Other	Os03g0122600	LOC_Os03g03100.1, LOC_Os03g03070.1				GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0030154 - cell differentiation, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3104	MADS55	OsMADS55	MADS BOX GENE 55	MADS box gene55, MADS-box transcription factor 55	MADS-BOX TRANSCRIPTION FACTOR 55		6	Q69TG5. a SHORT VEGETATIVE PHASE-like floret meristem identity gene. SHORT VEGETATIVE PHASE (SVP) subfamily.	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os06g0217300	LOC_Os06g11330.1				GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3105	MADS56	OsMADS56, FDRMADS8, RMADS214	MADS BOX GENE 56	MADS box gene56, MADS-box transcription factor 56	MADS-BOX TRANSCRIPTION FACTOR 56		10	A2Z9Q7(indica), P0C5B2(japonica). floral repressor. LOC_Os10g39130.	 Reproductive organ - Heading date,  Reproductive organ - panicle,  Other	Os10g0536100	LOC_Os10g39130.2, LOC_Os10g39130.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity	TO:0000621 - inflorescence development trait, TO:0002616 - flowering time	PO:0001083 - inflorescence development stage 
3106	MADS57	OsMADS57, MADS-57	MADS BOX GENE 57	MADS box gene57, MADS-box transcription factor 57	MADS-BOX TRANSCRIPTION FACTOR 57	osmads57-1, OsMADS57R	2	LOC_Os02g49840. Q6Z6W2. one of the miR444 target genes.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0731200	LOC_Os02g49840.4, LOC_Os02g49840.3, LOC_Os02g49840.2, LOC_Os02g49840.1				GO:0005634 - nucleus, GO:0009629 - response to gravity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051607 - defense response to virus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0006995 - cellular response to nitrogen starvation, GO:0003700 - transcription factor activity, GO:0016036 - cellular response to phosphate starvation	TO:0002693 - gravity response trait, TO:0000168 - abiotic stress trait, TO:0000148 - viral disease resistance	
3108	HDAC1	OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702	CLASS-1 TYPE HISTONE DEACETYLASE 1	class-1 type histone deacetylase 1, histone deacetylase 1	CLASS-1 TYPE HISTONE DEACETYLASE 1		6	This gene controls histone deacetylase. This gene widely expressed in the leaves, roots, and callus cells. AF513382. LOC_Os06g38470. 	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root	Os06g0583400	LOC_Os06g38470.3, LOC_Os06g38470.2, LOC_Os06g38470.1				GO:0006338 - chromatin remodeling, GO:0003714 - transcription corepressor activity, GO:0004407 - histone deacetylase activity	TO:0000370 - leaf width, TO:0000339 - stem thickness, TO:0000227 - root length	
3109	HDAC2	OsHDAC2, HDA710, OsHDA710	CLASS-1 TYPE HISTONE DEACETYLASE 2	class-1 type histone deacetylase2	CLASS-1 TYPE HISTONE DEACETYLASE 2		2	This gene controls histone deacetylase. This gene is expressed in the root and callus cells, but not in the leaves. AF513383	 Biochemical character	Os02g0215200	LOC_Os02g12380.3, LOC_Os02g12380.2, LOC_Os02g12380.1				GO:0004407 - histone deacetylase activity		
3110	HDAC3	OsHDAC3, HDA703	CLASS-1 TYPE HISTONE DEACETYLASE 3	class-1 type histone deacetylase3	CLASS-1 TYPE HISTONE DEACETYLASE 3		2	This gene controls histone deacetylase and is expressed in the root and callus cells, but not in the leaves. AF513384	 Biochemical character	Os02g0214900	LOC_Os02g12350.1				GO:0004407 - histone deacetylase activity		
3111	DREB1A	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1A	Dehydration-responsive element-binding protein 1A, Protein DREB1A, Protein C-repeat-binding factor 3, ethylene response factor 24, APETALA2/ethylene-responsive element binding protein 114	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1A		9	Expression of OsDREB1A is induced by cold. JN561151. A2Z389(indica), Q64MA1(japonica). AF300970. AY345233. AF494422. ObDREB1a is the orthologous gene in O. brachyantha. OsDREBL in Chen et al. 2003 and Lata, Prasad 2011 and Man et al. 2016. LOC_Os09g35030.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0522200	LOC_Os09g35030.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009609 - response to symbiotic bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0006950 - response to stress, GO:0009414 - response to water deprivation	TO:0000164 - stress trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
3112	DREB1B	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1B	Dehydration-responsive element-binding protein 1B, Protein DREB1B, ethylene response factor 31, APETALA2/ethylene-responsive element binding protein 169	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1B		9	Q3T5N4(japonica), Q8GUW4(indica). AF300972. AY785894. AY166833. AY319971. EF556551 (5' flanking region). The expression of OsDREB1B is induced by cold.  ObDREB1b is the orthologous gene in O. brachyantha. OsDREB1C in Tripathi et al. 2016.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0522000	LOC_Os09g35010.1				GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
3113	DREB2A	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2A	Dehydration-responsive element-binding protein 2A, Protein DREB2A, ethylene response factor 40, APETALA2/ethylene-responsive element binding protein 167	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2A		1	A2WL19 (indica), Q0JQF7 (japonica). AF300971. KF545561 to KF545569 (indica). AY064403, FN556368, FN556350, JQ341059, HM807364.  GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0165000	LOC_Os01g07120.2, LOC_Os01g07120.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006950 - response to stress, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009635 - response to herbicide	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000058 - herbicide sensitivity	
3114	DREB1C	OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1C	Dehydration-responsive element-binding protein 1C, Protein DREB1C, Protein C-repeat-binding factor 1, ethylene response factor 26, APETALA2/ethylene-responsive element binding protein 98	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1C		6	LOC_Os06g03670. A2Y8S6(indica), Q9LWV3(japonica). AY327040.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0127100	LOC_Os06g03670.1				GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0046686 - response to cadmium ion, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0009413 - response to flooding, GO:0009651 - response to salt stress, GO:0006350 - transcription, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0003700 - transcription factor activity	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
3115	DREB1D	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	Dehydration-responsive element-binding protein 1D, Protein DREB1D, Protein C-repeat-binding factor 4, ethylene response factor 116, APETALA2/ethylene-responsive element binding protein 54	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D		6	Q6J1A5(japonica), Q6REU5(indica). AY785895. AY607691. AY345235. the Rice Ortholog of Arabidopsis CBF/DREB1. AF243384.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0165600	LOC_Os06g06970.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription		
3116	GA20OX1	OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1	GIBBERELLIN 20-OXIDASE 1	rice GA 20-oxidase1, GA 20-oxidase1, Gibberellin 20 oxidase 1, Gibberellin C-20 oxidase 1, GA 20-oxidase 1, GA20 oxidase-1, GA 20-oxidase 1, GA20 oxidase, Gibberellin C-20 oxidase, Grain Number per Panicle1	GIBBERELLIN 20-OXIDASE 1	gnp1-D	3	This gene catalyzes successive oxidations at the C-20 site of GAs (gibberellic acids), and produces substrates for GA 3-oxidase. This gene is located on chromosome 3 at 164.6cM. EC=1.14.11.- Os03g0856700. LOC_Os03g63970. P93771. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. U50333. OsGA20ox2 in Wang et al. 2008.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Character as QTL - Yield and productivity	Os03g0856700	LOC_Os03g63970.1	GR:0061383			GO:0009685 - gibberellin metabolic process, GO:0009686 - gibberellin biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0055114 - oxidation reduction, GO:0005506 - iron ion binding	TO:0000396 - grain yield, TO:0002759 - grain number, TO:0000357 - growth and development trait, TO:0000599 - enzyme activity	PO:0000230 - inflorescence meristem , PO:0020148 - shoot apical meristem 
3118	QHB	OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9	QUIESCENT-CENTER-SPECIFIC-HOMEOBOX (QHB) GENE	quiescent-center-specific-homeobox (QHB) gene, WUSCHEL-related homeobox 9, Protein WOX5, Quiescent-specific homeobox protein	QUIESCENT-SPECIFIC HOMEOBOX PROTEIN		1	This homeobox gene is responsible to the cells in the quiescent center of root apical meristem (RAM). Q8W0F1. AM234751. OsWOX5 in Nardmann and Werr 2006, Cheng et al. 2014, Guo et al. 2018.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os01g0854500	LOC_Os01g63510.1				GO:0007275 - multicellular organismal development, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0009409 - response to cold, GO:0009735 - response to cytokinin stimulus, GO:0009790 - embryonic development	TO:0000401 - plant growth hormone sensitivity, TO:0000167 - cytokinin sensitivity, TO:0006001 - salt tolerance, TO:0000620 - embryo development trait, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0000025 - root tip , PO:0005052 - plant callus , PO:0005029 - root primordium 
3119	SCR	OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51	SCARECROW GENE	rice SCARECROW gene, SCARECROW, Protein SCARECROW 2, GRAS protein 51	PROTEIN SCARECROW 2		12	OsSCR is involved not only in the asymmetric division of the cortex/endodermis progenitor cell in the root, but also in that during stomata and ligule formation by establishing the polarization of cytoplasm. AB180961. Q2QYF3(japonica), A2ZHL0(indica).  PO:0020105; ligule ; PO:0009020; meristem L1 ; PO:0000060; root cortex-endodermis initial cell ; PO:0006085; root meristem ; PO:0005059; root endodermis ; PO:0000017; leaf primordium ; PO:0000026; primary root tip. GRO:0007047; 02-seedling. LOC_Os12g02870. OsSCR2 in Cui et al. 2007 and Wu et al. 2014.	 Vegetative organ - Root	Os12g0122000	LOC_Os12g02870.1	GR:0080035			GO:0010103 - stomatal complex morphogenesis, GO:0008356 - asymmetric cell division, GO:0005737 - cytoplasm, GO:0006350 - transcription, GO:0007275 - multicellular organismal development, GO:0045449 - regulation of transcription		PO:0000017 - vascular leaf primordium , PO:0000026 - primary root tip , PO:0000060 - root cortex-endodermis initial cell , PO:0005059 - root endodermis , PO:0006085 - root meristem , PO:0009020 - meristem L1 , PO:0020105 - ligule 
3120	SHR1	OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38	SHORT ROOT GENE 1	rice SHORT  ROOT gene1, SHORT-ROOT 1, SHORTROOT1, SHORT-ROOT protein 1, GRAS protein 38	PROTEIN SHORT-ROOT 1		7	OsSHR and OsSCR genes work co-operatively for formation of root endodermis and leaf stomata of rice. A2YN56(indica), Q8H2X8(japonica). LOC_Os07g39820. ZmSHR2 (GRMZM2G172657) and ZmSHR2h (GRMZM2G019060) are orthologous to OsSHR1 (Os07g39820) (Schuler et al. 2018).	 Vegetative organ - Root	Os07g0586900	LOC_Os07g39820.1				GO:0007275 - multicellular organismal development, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0048364 - root development, GO:0045449 - regulation of transcription	TO:0000656 - root development trait	PO:0000258 - root cortex , PO:0007520 - root development stage 
3121	HBD2	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1	HYBRID BREAKDOWN 2 	hybrid breakdown 2, rice casein Kinase I, casein kinase I, Low Temperature Growth 1, low-temperature response protein kinase 1	CASEIN KINASE I	OsCKI1-1, OsCKI1-2, ltg1	2	The homozygotes show abnormal root development, including fewer lateral and adventitious roots, and shorten primary roots as a result of reduced cell elongation. AJ487966. PO:0009005; root ; PO:0020125; elongation zone. GRO:0007047; 02-seedling ; GRO:0007043; 01-germination ; GRO:0007059; 2.01-first leaf through coleoptile. The gene on chromosome 2, designated hybrid breakdown 2 (hbd2), was mapped between simple sequence repeat markers RM3515 and RM3730.  GO:0060918: auxin transport.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness,  Tolerance and resistance - Stress tolerance	Os02g0622100	LOC_Os02g40860.1	GR:0080020			GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0048364 - root development, GO:0009850 - auxin metabolic process, GO:0009741 - response to brassinosteroid stimulus, GO:0006468 - protein amino acid phosphorylation, GO:0007275 - multicellular organismal development, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0004713 - protein tyrosine kinase activity, GO:0004672 - protein kinase activity, GO:0009851 - auxin biosynthetic process, GO:0000226 - microtubule cytoskeleton organization, GO:0009631 - cold acclimation, GO:0009826 - unidimensional cell growth	TO:0000615 - abscisic acid sensitivity, TO:0002672 - auxin content, TO:0000206 - leaf angle, TO:0000401 - plant growth hormone sensitivity, TO:0000257 - root branching, TO:0000303 - cold tolerance, TO:0000227 - root length, TO:0000084 - root number, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait	PO:0009005 - root , PO:0020125 - elongation zone 
3122	NAS3	OsNAS3	NICOTIANAMINE SYNTHASE 3	rice nicotianamine synthase3, NA synthase gene 3, Nicotianamine synthase 3, S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 3	NICOTIANAMINE SYNTHASE 3		7	Nicotianamine synthase is a critical component in Fe acquisition in graminaceous plants. Nicotianamine and nicotianamine synthase play an important role in long-distance trasport of Fe in rice plants. EC=2.5.1.43 Os07g0689600. LOC_Os07g48980. A2YQ58(indcica). Q0D3F2(japonica). PO:0006203; pericycle ; PO:0000071; companion cell ; PO:0009005; root ; PO:0000293; guard cell ; PO:0009025; leaf. TO:0006049: iron concentration. TO:0006053: zinc concentration.	 Biochemical character	Os07g0689600	LOC_Os07g48980.1	GR:0080049			GO:0030410 - nicotianamine synthase activity, GO:0006826 - iron ion transport, GO:0030418 - nicotianamine biosynthetic process	TO:0000224 - iron sensitivity	PO:0000071 - companion cell , PO:0000293 - guard cell , PO:0006203 - pericycle , PO:0009005 - root , PO:0009025 - vascular leaf 
3123	HAP3A	OsHAP3A, OsNF-YB-2, NFYB2, NF-YB2	HAP3A SUBUNIT OF CCAAT-BOX BINDING COMPLEX	rice HAP3A, Nuclear transcription factor Y subunit B-2, NUCLEAR FACTOR-Y subunit B2, NUCLEAR FACTOR-Y subunit NF-YB2, Transcriptional activator HAP3A, NF-YB subunit 2, NF-YB family 2	HAP3A SUBUNIT OF CCAAT-BOX BINDING COMPLEX		1	This gene regulates chloroplast biogenesis. AB095438, AK108142. NF-YB, CBF-A. Q5QMG3. LOC_Os01g61810.	 Vegetative organ - Leaf,  Other	Os01g0834400	LOC_Os01g61810.2, LOC_Os01g61810.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0009658 - chloroplast organization, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription	TO:0002715 - chloroplast development trait	
3124	HAP3B	OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C	HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEX	rice HAP3B, Nuclear transcription factor Y subunit B-3, Transcriptional activator HAP3B, NUCLEAR FACTOR-Y subunit B4, NUCLEAR FACTOR-Y subunit NF-YB4, NF-YB subunit 4, NF-YB family 4	HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEX		5	This gene regulates chloroplast biogenesis. AB095439. NF-YB, CBF-A. Q60EQ4. LOC_Os05g49780. NF-YB4 (HAP3C) in Petroni et al. 2012 and Yang et al. 2017. OsHAP3C in Li et al. 2016.	 Vegetative organ - Leaf,  Other	Os05g0573500	LOC_Os05g49780.1				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait	
3125	HAP3C	OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B	HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX	rice HAP3C, Nuclear transcription factor Y subunit B-4, Transcriptional activator HAP3C, NUCLEAR FACTOR-Y subunit B3, NUCLEAR FACTOR-Y subunit NF-YB3, NF-YB subunit 3, NF-YB family 3	HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX		5	This gene regulates chloroplast biogenesis. AB095440. NF-YB, CBF-A. Q65XK1. LOC_Os05g38820. NF-YB3 (HAP3B) in Petroni et al. 2012 and Yang et al. 2017. OsHAP3B in Li et al. 2016.	 Vegetative organ - Leaf,  Other	Os05g0463800	LOC_Os05g38820.4				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
3126	YSL2	OsYSL2, Os-YSL2, OsYs6	YELLOW STRIP-LIKE GENE 2	rice YSL (yellow stripe-like) gene2, Metal-nicotianamine transporter YSL2, Protein YELLOW STRIPE LIKE 2, ferrous Fe- and Mn-NA transporter OsYSL2, yellow stripe 1-like transporter 2	METAL-NICOTIANAMINE TRANSPORTER YSL2		2	This gene encodes a rice metal-NA (nicotianamine) transporter that is responsible for the phloem transport of Fe and Mn and the translocation of Fe and Mn into the grain. yellow stripe 1-like. YS1-like metal-nicotianamine transporter. IRON(II)-NICOTIANAMINE ACID TRANSPORTER. Q6H3Z6. PO:0009051; spikelet ; PO:0000071; companion cell ; PO:0005417; phloem ; PO:0009009; embryo ; PO:0006456; ovary (sensu Poaceae) ; PO:0005020; vascular bundle. AB126253, AB164646. CI446246. D42870, BE228381, BE230357. TO:0006049: iron concentration. TO:0006053: zinc concentration. Fe(III)-MAs (mugineic acid family phytosiderophores)/Fe(II)-NA (nicotianamine) transporter.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0649900	LOC_Os02g43370.2, LOC_Os02g43370.1	GR:0080050			GO:0010106 - cellular response to iron ion starvation, GO:0005886 - plasma membrane, GO:0010039 - response to iron ion, GO:0005381 - iron ion transmembrane transporter activity, GO:0030001 - metal ion transport, GO:0009739 - response to gibberellin stimulus, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0046873 - metal ion transmembrane transporter activity, GO:0006826 - iron ion transport	TO:0000166 - gibberellic acid sensitivity, TO:0000224 - iron sensitivity	PO:0000071 - companion cell , PO:0005020 - vascular bundle , PO:0005417 - phloem , PO:0009072 - plant ovary , PO:0009051 - spikelet , PO:0009009 - plant embryo 
3127	CPS1	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4	ENT-COPALYL DIPHOSPHATE SYNTHASE 1	"rice ent-copalyl diphosphate (CDP) synthase1, ent-copalyl diphosphate synthase 1, \"Ent-copalyl diphosphate synthase 1, chloroplastic\", Ent-CDP synthase 1, terpene synthase 4"	ENT-COPALYL DIPHOSPHATE SYNTHASE 1	oscps1-1, oscps1-2, cps1, Os cps1-1, cps1-1, cps1-2	2	This gene encodes one of the GA metabolic enzymes; ent-copalyl diphosphate synthase (CPS). This gene is located on chromosome 2 at 2.49cM. EC=5.5.1.13 Ent-kaurene synthase A. AB126932. Q6ET36(japonica). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. EF577637-EF577641 (wild rice species). DQ901860-DQ901889 (wild rice species). LOC_Os02g17780.	 Biochemical character,  Vegetative organ - Culm	Os02g0278700	LOC_Os02g17780.1	GR:0020064			GO:0000287 - magnesium ion binding, GO:0009507 - chloroplast, GO:0008152 - metabolic process, GO:0009685 - gibberellin metabolic process, GO:0009536 - plastid, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0009905 - ent-copalyl diphosphate synthase activity, GO:0016829 - lyase activity, GO:0009686 - gibberellin biosynthetic process	TO:0000207 - plant height, TO:0000599 - enzyme activity, TO:0000357 - growth and development trait	
3128	CPS2	OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2	ENT-COPALYL DIPHOSPHATE SYNTHASE 2	rice ent-copalyl diphosphate (CDP) synthase2, ent-copalyl diphosphate synthase 2, Ent-CDP synthase 2, ent-copalyl diphosphate synthase like 1, cyclase2, cyclase 2, ent-CDP synthase, terpene synthase 7	ENT-COPALYL DIPHOSPHATE SYNTHASE 2		2	LOC_Os02g36210. Q6Z5I0(japonica). Q5MQ85(indica). AY602991. AB066271. This gene encodes one of the GA metabolic enzymes; ent-copalyl diphosphate synthase (CPS). This gene is located on chromosome 2 at 86cM. EC=5.5.1.13 Ent-kaurene synthase A. GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. This gene encodes ent-CDP (copalyl diphospate) synthase, which is responsible for the biosynthesis of oryzalexins A-F and phytocassanes A-E.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0571100	LOC_Os02g36210.1	GR:0020065			GO:0009411 - response to UV, GO:0009536 - plastid, GO:0009905 - ent-copalyl diphosphate synthase activity, GO:0016829 - lyase activity, GO:0008152 - metabolic process, GO:0009685 - gibberellin metabolic process, GO:0009975 - cyclase activity, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0006952 - defense response, GO:0005739 - mitochondrion, GO:0052315 - phytoalexin biosynthetic process, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0000287 - magnesium ion binding	TO:0000160 - UV light sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000599 - enzyme activity, TO:0000074 - blast disease, TO:0000357 - growth and development trait	
3129	CPS3	OsCPS3	ENT-COPALYL DIPHOSPHATE 3	rice ent-copalyl diphosphate (CDP) synthase3, ent-copalyl diphosphate (CDP) synthase 3, ent-copalyl diphosphate synthase 3	ENT-COPALYL DIPHOSPHATE 3		9	This gene encodes one of the GA metabolic enzymes; ent-copalyl diphosphate synthase (CPS). It is located on chromosome 9 at 26.7cM. AP005767.	 Biochemical character	Os09g0319800	LOC_Os09g15050.1	GR:0101306			GO:0016829 - lyase activity, GO:0009905 - ent-copalyl diphosphate synthase activity, GO:0000287 - magnesium ion binding, GO:0009536 - plastid, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0009685 - gibberellin metabolic process		
3130	CPS4	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4	ENT-COPALYL DIPHOSPHATE SYNTHASE 4	rice ent-copalyl diphosphate (CDP) synthase4, ent-copalyl diphosphate synthase 4, ent-copalyl diphosphate synthase like 3, syn-copalyl diphosphate synthase, syn-copalyl diphosphate synthase, cyclase1, cyclase 1, syn-CDP synthase, terpene synthase 15	ENT-COPALYL DIPHOSPHATE SYNTHASE 4	cps4-tos	4	LOC_Os04g09900. Q0JF02. Q6E7D7. AY530101. AB066270. This gene encodes one of the GA metabolic enzymes; ent-copalyl diphosphate synthase (CPS). It is located on chromosome 4 at 14.3cM. EC=5.5.1.14 Syn-copalyl diphosphate synthase, Syn-CPP synthase, OsCPSsyn. GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. momilactone biosynthetic pathway. GO:1900425: negative regulation of defense response to bacterium.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0178300	LOC_Os04g09900.3, LOC_Os04g09900.2, LOC_Os04g09900.1	GR:0020066			GO:0009536 - plastid, GO:0009975 - cyclase activity, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0009411 - response to UV, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0042742 - defense response to bacterium, GO:0051498 - syn-copalyl diphosphate synthase activity, GO:0009685 - gibberellin metabolic process, GO:0008152 - metabolic process, GO:0016829 - lyase activity, GO:0000287 - magnesium ion binding	TO:0000624 - allelopathic effect, TO:0000074 - blast disease, TO:0002675 - gibberellic acid content, TO:0000160 - UV light sensitivity, TO:0000439 - fungal disease resistance, TO:0000207 - plant height, TO:0000599 - enzyme activity, TO:0000357 - growth and development trait, TO:0002670 - momilactone A content, TO:0002671 - momilactone B content, TO:0000175 - bacterial blight disease resistance	
3131	KS1	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26	ENT-KAURENE SYNTHASE 1	"rice ent-kaurene synthase1, Ent-kaurene synthase 1, \"Ent-kaur-16-ene synthase, chloroplastic\", Kaurene synthase 1, Ent-kaurene synthase B, ent-kaurene synthase I, terpene synthase 26"	ENT-KAURENE SYNTHASE 1	osks1-1, osks1-2, osck1-3, osks1, ks1, ks1-1, ks1-2	4	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 4 at 104cM linked with OsKS2 and OsKS3. EC=4.2.3.19 Os04g0611800. LOC_Os04g52230. Q0JA82. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AY347876, AY347877, AY347878. EF577651-EF577655 (wild rice species). osks1A mutation is solely responsible for the severe dwarfism (Margis-Pinheiro et al. 2005). GU727062-GU727081 (wild rice species). FJ811084-FJ811124 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901919-DQ901953 (wild rice species). EF069714-EF069781 (O. sativa and wild rice species). LOC_Os04g52230.	 Biochemical character,  Vegetative organ - Culm	Os04g0611800	LOC_Os04g52230.1	GR:0020067			GO:0009507 - chloroplast, GO:0000287 - magnesium ion binding, GO:0005739 - mitochondrion, GO:0008152 - metabolic process, GO:0009899 - ent-kaurene synthase activity, GO:0009536 - plastid, GO:0009685 - gibberellin metabolic process, GO:0009686 - gibberellin biosynthetic process	TO:0002675 - gibberellic acid content, TO:0000599 - enzyme activity, TO:0000357 - growth and development trait	
3132	KS2	OsKS2, KS2, KSL2, OsKSL2, OsTPS27	ENT-KAURENE SYNTHASE 2	rice ent-kaurene synthase2, Ent-kaurene synthase 2, Ent-kaurene synthase like-2, Ent-kaurene synthase-like 2, terpene synthase 27	ENT-KAURENE SYNTHASE 2	osks2	4	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 4 at 104cM linked with OsKS1 and OsKS3. EC=4.2.3.-  Q0JA81. DQ823350. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. A point mutation in OsKS2 cause a severe dwarf phenotype (Ji et al. 2013). LOC_Os04g52240. LC033788.	 Biochemical character,  Vegetative organ - Culm	Os04g0612000	LOC_Os04g52240.1	GR:0020068			GO:0006952 - defense response, GO:0000287 - magnesium ion binding, GO:0008152 - metabolic process, GO:0009507 - chloroplast, GO:0009685 - gibberellin metabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0009899 - ent-kaurene synthase activity, GO:0016829 - lyase activity, GO:0009536 - plastid	TO:0000172 - jasmonic acid sensitivity, TO:0000207 - plant height, TO:0002675 - gibberellic acid content, TO:0000357 - growth and development trait, TO:0000599 - enzyme activity	PO:0009005 - root 
3133	KS3	OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25	ENT-KAURENE SYNTHASE 3	rice ent-kaurene synthase3, Ent-kaurene synthase 3, Ent-kaurene synthase-like 3, kaurene synthase like-3, Ent-kaurene synthase-like 2, terpene synthase 25	ENT-KAURENE SYNTHASE 3		4	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 4 at 104cM linked with OsKS1 and OsKS2. EC=4.2.3.- Q0JA83. AB243669. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage.  AY347879. LOC_Os04g52210.	 Biochemical character	Os04g0611700	LOC_Os04g52210.1	GR:0020069			GO:0006952 - defense response, GO:0000287 - magnesium ion binding, GO:0008152 - metabolic process, GO:0016829 - lyase activity		
3134	KS4	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16	ENT-KAURENE SYNTHASE 4	"rice ent-kaurene synthase4, Ent-kaurene synthase 4, Ent-kaurene synthase-like 4, Ent-kaurene synthase like-4, \"Syn-pimara-7, 15-diene synthase\", \"9-beta-pimara-7, 15-diene synthase\", syn-pimara-7 15-diene synthase, syn Pimaradiene synthase, KAURENE SYNTHASE-LIKE 4, terpene synthase 16"	ENT-KAURENE SYNTHASE 4		4	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 4 at 14.3cM linked with OsCPS4. EC=4.2.3.35 Q0JEZ8(japonica). Q66QH3(indica). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AY616862. AB126934.  AY347880. LOC_Os04g10060. momilactone biosynthetic pathway.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0179700	LOC_Os04g10060.1	GR:0020070			GO:0000287 - magnesium ion binding, GO:0002237 - response to molecule of bacterial origin, GO:0052315 - phytoalexin biosynthetic process, GO:0034279 - syn-pimara-7,15-diene synthase activity, GO:0042742 - defense response to bacterium, GO:0008152 - metabolic process, GO:0002238 - response to molecule of fungal origin, GO:0009536 - plastid, GO:0051501 - diterpene phytoalexin metabolic process, GO:0006952 - defense response, GO:0009899 - ent-kaurene synthase activity, GO:0016829 - lyase activity	TO:0002670 - momilactone A content, TO:0000357 - growth and development trait, TO:0000175 - bacterial blight disease resistance, TO:0000160 - UV light sensitivity, TO:0000599 - enzyme activity, TO:0002669 - diterpenoid phytoalexin content	
3135	KS5	OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8	ENT-KAURENE SYNTHASE 5	"rice ent-kaurene synthase5, Ent-kaurene synthase 5, Ent-kaurene synthase-like 5, \"Ent-pimara-8(14), 15-diene synthase\", ent-pimara-8(14) 15-diene synthase, Ent-kaurene synthase-like 6, KAURENE SYNTHASE-LIKE 5, terpene synthase 8"	ENT-KAURENE SYNTHASE 5		2	This gene encodes one of the GA metabolic enzuymes; ent-kaurene synthase (KS). It is located on chromosome 2 at 86cM linked with OsKS6, OsKS7 and OsCPS2. EC=4.2.3.30 EC=4.2.3.n8 ent-isokaurene synthase. Ent-isokaur-15-ene synthase. Isokaurene synthase. AB126935. DQ823352. Q6Z5J6(japonica). A4KAG7(indica). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AY347882. LOC_Os02g36220.	 Biochemical character	Os02g0571300	LOC_Os02g36220.2, LOC_Os02g36220.1	GR:0020071			GO:0009536 - plastid, GO:0051501 - diterpene phytoalexin metabolic process, GO:0006952 - defense response, GO:0034281 - ent-isokaurene synthase activity, GO:0016829 - lyase activity, GO:0034282 - ent-pimara-8(14),15-diene synthase activity, GO:0009899 - ent-kaurene synthase activity, GO:0000287 - magnesium ion binding, GO:0008152 - metabolic process, GO:0005739 - mitochondrion	TO:0000599 - enzyme activity, TO:0000357 - growth and development trait	
3136	KS6	OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9	ENT-KAURENE SYNTHASE 6	rice ent-kaurene synthase6, Ent-kaurene synthase-like 6, Ent-kaurene synthase 6, Ent-kaurene synthase-like 5, KAURENE SYNTHASE-LIKE 6, terpene synthase 9	ENT-KAURENE SYNTHASE 6		2	This gene encodes one of the GA metabolic enzyme: ent-kaurene synthase (KS). It is located on chromosome 2 at 86cM linked with OsKS5. OsKS7 and OsCPS2. Iso-kaurene synthase, Ent-isokaur-15-ene synthase, ent-isokaurene synthase. EC=4.2.3.n8 AB126936. DQ823353. A4KAG8. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage.  AY347881. LOC_Os02g36264.	 Biochemical character	Os02g0571800	LOC_Os02g36264.1	GR:0020072			GO:0006952 - defense response, GO:0051501 - diterpene phytoalexin metabolic process, GO:0008152 - metabolic process, GO:0034281 - ent-isokaurene synthase activity, GO:0009685 - gibberellin metabolic process, GO:0009899 - ent-kaurene synthase activity, GO:0016838 - carbon-oxygen lyase activity, acting on phosphates, GO:0009536 - plastid, GO:0000287 - magnesium ion binding	TO:0000357 - growth and development trait, TO:0000599 - enzyme activity	
3137	KS7	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6	ENT-KAURENE SYNTHASE 7	rice ent-kaurene synthase7, Ent-kaurene synthase 7, Ent-kaurene synthase-like 7, Ent-cassa-12, 15-diene synthase, ent-Cassadiene synthase, Diterpene cyclase 1, Oryza sativa diterpene cyclase 1, terpene synthase 6	ENT-KAURENE SYNTHASE 7		2	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 2 at 86cM linked with OsKS5, OsKS6 and OsCPS2. EC=4.2.3.28 Q0E088(japonica). Q00G37(indica). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. DQ823354. AB089272. LOC_Os02g36140.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os02g0570400	LOC_Os02g36140.5, LOC_Os02g36140.4, LOC_Os02g36140.3, LOC_Os02g36140.2	GR:0020073			GO:0009536 - plastid, GO:0006952 - defense response, GO:0005739 - mitochondrion, GO:0000287 - magnesium ion binding, GO:0016829 - lyase activity, GO:0009899 - ent-kaurene synthase activity, GO:0008152 - metabolic process, GO:0052315 - phytoalexin biosynthetic process, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0051501 - diterpene phytoalexin metabolic process, GO:0034277 - ent-cassa-12,15-diene synthase activity	TO:0000172 - jasmonic acid sensitivity, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0002675 - gibberellic acid content, TO:0000599 - enzyme activity, TO:0000074 - blast disease	
3138	KS8	OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32	ENT-KAURENE SYNTHASE 8	rice ent-kaurene synthase8, Ent-kaurene synthase 8, Stemar-13-ene synthase, Stemarene synthase, syn-Stemarene synthase, Ent-kaurene synthase-like 8, Diterpene cyclase 2, terpene synthase 32	ENT-KAURENE SYNTHASE 8		11	This gene encodes one of the GA metabolic enzymes: ent-kaurene synthase (KS). It is located on chromosome 11 at 57.6cM linked with OsKS9. EC=4.2.3.33 Q6BDZ9. AB118056. LOC_Os11g28530.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0474800	LOC_Os11g28530.3, LOC_Os11g28530.2, LOC_Os11g28530.1	GR:0101307			GO:0009753 - response to jasmonic acid stimulus, GO:0000287 - magnesium ion binding, GO:0006952 - defense response, GO:0008152 - metabolic process, GO:0009536 - plastid, GO:0009899 - ent-kaurene synthase activity, GO:0034278 - stemar-13-ene synthase activity, GO:0051501 - diterpene phytoalexin metabolic process, GO:0016829 - lyase activity, GO:0050832 - defense response to fungus, GO:0052315 - phytoalexin biosynthetic process	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
3139	KS9	OsKS9, KS9, KSL9, OsKSL9	ENT-KAURENE SYNTHASE 9	rice ent-kaurene synthase9, Ent-kaurene synthase 9	ENT-KAURENE SYNTHASE 9		11	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 11 at 57.6cM linked with OsKS8. AC135398.	 Biochemical character			GR:0101308			GO:0009899 - ent-kaurene synthase activity		
3140	KO1	OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7	ENT-KAURENE OXIDASE 1	rice ent-kaurene oxidase1, cytochrome P450 701A7	ENT-KAURENE OXIDASE 1		6	This gene encodes one of the GA metabolic enzymes; ent-kaurene oxidase (KO). It is located on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5.	 Biochemical character	Os06g0569900	LOC_Os06g37330.1				GO:0009055 - electron carrier activity, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0010241 - ent-kaurene oxidase activity		
5004	MOC1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33	MONOCULM 1	monoculm1, Monoculm 1, Protein MONOCULM 1, GRAS protein 33	GRAS PROTEIN 33	moc1, moc1-4, moc1-5	6	Os06g0610300. LOC_Os06g40780. Q84MM9. PO:0005001; basal axillary shoot ; PO:0004709; axillary bud ; PO:0000232; axillary bud meristem ; PO:0006343; axillary shoot. GRO:0007049; 03-tillering stage.  FJ032625-FJ032640 (wild rice MONOCULM1-orthologous regions). AY242058. Positively regulate rice tiller and panicle branches. ortholog of lateral suppressor (LS/LAS) gene from tomato and arabidopsis. Os06g0610350 in Ikeda et al. 2013. KC700663-KC700674 (O. sativa and wild rice species, intron 2).	 Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os06g0610300	LOC_Os06g40780.1	GR:0080008			GO:0030528 - transcription regulator activity, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0010014 - meristem initiation	TO:0000152 - panicle number, TO:0000547 - primary branch number, TO:0000456 - spikelet number, TO:0000207 - plant height, TO:0000329 - tillering ability	PO:0000232 - axillary bud meristem , PO:0004709 - axillary bud , PO:0005001 - basal axillary shoot system , PO:0006343 - axillary shoot system 
5005	GI	OsGI, Gi, Os-GI	GIGANTEA	orthologue of the arabidopsis GIGANTEA, Gigantea, protein GIGANTEA, Os-GIGANTEA, OsGIGANTEA	PROTEIN GIGANTEA	osgi, osgi-1	1	Q9AWL7. GRO:0007044; 06-heading stage. a rice ortholog of Arabidopsis gene for circadian clock component. AY885710-AY885737 and DQ374670-DQ374697  (O. sativa and other wild rice species, partial cds). AJ133787. GO:1902456: regulation of stomatal opening.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os01g0182600	LOC_Os01g08700.8, LOC_Os01g08700.6, LOC_Os01g08700.5, LOC_Os01g08700.4, LOC_Os01g08700.3, LOC_Os01g08700.2, LOC_Os01g08700.1	GR:0100114			GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0048511 - rhythmic process, GO:0030154 - cell differentiation, GO:0010119 - regulation of stomatal movement, GO:0005634 - nucleus, GO:0047484 - regulation of response to osmotic stress, GO:0009908 - flower development	TO:0000278 - root to shoot ratio, TO:0000137 - days to heading, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000227 - root length, TO:0001018 - transpiration rate, TO:0000328 - sucrose content, TO:0006002 - proline content, TO:0000523 - stomatal resistance	PO:0009005 - root , PO:0009006 - shoot system , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
5006	qAAA-6-1 (qAAA6-1)	qAAA-6-1 (qAAA6-1)	amylose content (QTL)-6-1(t)	amylose content (QTL)-6-1(t)					 Character as QTL - Grain quality								
5007	qDTM-4-2(t) (dtm4.1)	qDTM-4-2(t) (dtm4.1)	days to maturity (QTL)-4-2(t)	days to maturity (QTL)-4-2(t)					 Character as QTL - Yield and productivity								
5008	qDTM-7-1(t) (dtm4.1)	qDTM-7-1(t) (dtm4.1)	days to maturity (QTL)-7-1(t)	days to maturity (QTL)-7-1(t)					 Character as QTL - Yield and productivity								
5009	qDTM-8-1(t) (dtm4.1)	qDTM-8-1(t) (dtm4.1)	days to maturity (QTL)-8-1(t)	days to maturity (QTL)-8-1(t)					 Character as QTL - Yield and productivity								
5011	qGPP-1-2(t) (gpp1.1)	qGPP-1-2(t) (gpp1.1)	grains per panicle (QTL)-1-1(t)	grains per panicle (QTL)-1-1(t)					 Character as QTL - Yield and productivity								
5012	qGPP-1-2(t) (gpp11.1)	qGPP-1-2(t) (gpp11.1)	grains per panicle (QTL)-11-1(t)	grains per panicle (QTL)-11-1(t)					 Character as QTL - Yield and productivity								
5013	qGPP-1-2(t) (gpp12.1)	qGPP-1-2(t) (gpp12.1)	grains per panicle (QTL)-12-1(t)	grains per panicle (QTL)-12-1(t)					 Character as QTL - Yield and productivity								
5014	qGPP-1-2(t) (gpp12.2)	qGPP-1-2(t) (gpp12.2)	grains per panicle (QTL)-12-2(t)	grains per panicle (QTL)-12-2(t)					 Character as QTL - Yield and productivity								
5015	qGPP-1-2(t) (gpp2.1)	qGPP-1-2(t) (gpp2.1)	grains per panicle (QTL)-2-1(t)	grains per panicle (QTL)-2-1(t)					 Character as QTL - Yield and productivity								
5016	qGPP-1-2(t) (gpp2.2)	qGPP-1-2(t) (gpp2.2)	grains per panicle (QTL)-2-2(t)	grains per panicle (QTL)-2-2(t)					 Character as QTL - Yield and productivity								
5017	qGPP-1-2(t) (gpp3.1)	qGPP-1-2(t) (gpp3.1)	grains per panicle (QTL)-3-1(t)	grains per panicle (QTL)-3-1(t)					 Character as QTL - Yield and productivity								
5018	qGPP-1-2(t) (gpp3.2)	qGPP-1-2(t) (gpp3.2)	grains per panicle (QTL)-3-2(t)	grains per panicle (QTL)-3-2(t)					 Character as QTL - Yield and productivity								
5019	qGPP-1-2(t) (gpp4.1)	qGPP-1-2(t) (gpp4.1)	grains per panicle (QTL)-4-1(t)	grains per panicle (QTL)-4-1(t)					 Character as QTL - Yield and productivity								
5020	qGPP-1-2(t) (gpp8.1)	qGPP-1-2(t) (gpp8.1)	grains per panicle (QTL)-8-1(t)	grains per panicle (QTL)-8-1(t)					 Character as QTL - Yield and productivity								
5021	qGPP-1-2(t) (gpp9.1)	qGPP-1-2(t) (gpp9.1)	grains per panicle (QTL)-9-1(t)	grains per panicle (QTL)-9-1(t)					 Character as QTL - Yield and productivity								
5022	qGR-3-1 (qGR7-1)	qGR-3-1 (qGR7-1)	Germination rate (QTL)-7-1	Germination rate (QTL)-7-1					 Character as QTL - Germination								
5040	qGYD-2	qGYD-2	grain yield per plant (QTL)-2	grain yield per plant (QTL)-2					 Character as QTL - Yield and productivity								
5041	qGYD-6-2	qGYD-6-2	grain yield per plant (QTL)-6-2	grain yield per plant (QTL)-6-2					 Character as QTL - Yield and productivity								
5042	qGYD-7-3	qGYD-7-3	grain yield per plant (QTL)-7-3	grain yield per plant (QTL)-7-3					 Character as QTL - Yield and productivity								
5043	qHID-1-2(t) (qHID1-1)	qHID-1-2(t) (qHID1-1)	harvest index (QTL)-1-2(t)	harvest index (QTL)-1-2(t)					 Character as QTL - Yield and productivity								
5044	qHID-3-1(t) (qHID1-1)	qHID-3-1(t) (qHID1-1)	harvest index (QTL)-3-1(t)	harvest index (QTL)-3-1(t)					 Character as QTL - Yield and productivity								
5045	qHID-3-2(t) (qHID1-1)	qHID-3-2(t) (qHID1-1)	harvest index (QTL)-3-2(t)	harvest index (QTL)-3-2(t)					 Character as QTL - Yield and productivity								
5046	qHID-4-3(t) (qHID1-1)	qHID-4-3(t) (qHID1-1)	harvest index (QTL)-4-3(t)	harvest index (QTL)-4-3(t)					 Character as QTL - Yield and productivity								
5047	qHID-7-1(t) (qHID1-1)	qHID-7-1(t) (qHID1-1)	harvest index (QTL)-7-1(t)	harvest index (QTL)-7-1(t)					 Character as QTL - Yield and productivity								
5048	qHID-8-1(t) (qHID1-1)	qHID-8-1(t) (qHID1-1)	harvest index (QTL)-8-1(t)	harvest index (QTL)-8-1(t)					 Character as QTL - Yield and productivity								
5049	qHID-8-2(t) (qHID1-1)	qHID-8-2(t) (qHID1-1)	harvest index (QTL)-8-2(t)	harvest index (QTL)-8-2(t)					 Character as QTL - Yield and productivity								
5055	qNOP-12-1(t) (qNOP1-1)	qNOP-12-1(t) (qNOP1-1)	number of panicles per plant (QTL)-12-1(t)	number of panicles per plant (QTL)-12-1(t)					 Character as QTL - Yield and productivity								
5056	qNOP-12-2(t) (qNOP1-1)	qNOP-12-2(t) (qNOP1-1)	number of panicles per plant (QTL)-12-2(t)	number of panicles per plant (QTL)-12-2(t)					 Character as QTL - Yield and productivity								
5057	qNOP-3-1(t) (qNOP1-1)	qNOP-3-1(t) (qNOP1-1)	number of panicles per plant (QTL)-3-1(t)	number of panicles per plant (QTL)-3-1(t)					 Character as QTL - Yield and productivity								
5058	qNOP-4-1(t) (qNOP1-1)	qNOP-4-1(t) (qNOP1-1)	number of panicles per plant (QTL)-4-1(t)	number of panicles per plant (QTL)-4-1(t)					 Character as QTL - Yield and productivity								
5059	qNOP-4-2(t) (qNOP1-1)	qNOP-4-2(t) (qNOP1-1)	number of panicles per plant (QTL)-4-2(t)	number of panicles per plant (QTL)-4-2(t)					 Character as QTL - Yield and productivity								
5061	qPH-3-5(t) (qPHT3-5)	qPH-3-5(t) (qPHT3-5)	plant height (QTL)-3-5(t)	plant height (QTL)-3-5(t)					 Character as QTL - Plant growth activity								
5062	qPH-3-6(t) (qPHT3-6)	qPH-3-6(t) (qPHT3-6)	plant height (QTL)-3-6(t)	plant height (QTL)-3-6(t)					 Character as QTL - Plant growth activity								
5063	qPH-7-1(t) (qPHT1-1)	qPH-7-1(t) (qPHT1-1)	plant height (QTL)-7-1(t)	plant height (QTL)-7-1(t)					 Character as QTL - Plant growth activity								
5065	qPPL-11-1(t) (ppl12.1)	qPPL-11-1(t) (ppl12.1)	panicles per plant (QTL)-11-1(t)	panicles per plant (QTL)-11-1(t)					 Character as QTL - Yield and productivity								
5068	qRA-9-1 (qRA5-1)	qRA-9-1 (qRA5-1)	root activity (QTL)-9-1	root activity (QTL)-9-1					 Character as QTL - Root activity								
5069	qRGAF-4-1(t) (rgaf2a)	qRGAF-4-1(t) (rgaf2a)	retention of the green area of the flag leaf (QTL)-4-1(t)	retention of the green area of the flag leaf (QTL)-4-1(t)					 Character as QTL - Plant growth activity								
5070	qRGAF-4-2(t) (rgaf2a)	qRGAF-4-2(t) (rgaf2a)	retention of the green area of the flag leaf (QTL)-4-2(t)	retention of the green area of the flag leaf (QTL)-4-2(t)					 Character as QTL - Plant growth activity								
5072	qSF-10-2(t)	qSF-10-2(t)	spikelet fertility (QTL)-10-2(t)	spikelet fertility (QTL)-10-2(t)					 Character as QTL - Seed sterility								
5073	qSF-11(t)	qSF-11(t)	spikelet fertility (QTL)-11(t)	spikelet fertility (QTL)-11(t)					 Character as QTL - Seed sterility								
5074	qSF-3(t)	qSF-3(t)	spikelet fertility (QTL)-3(t)	spikelet fertility (QTL)-3(t)					 Character as QTL - Seed sterility								
5075	qSF-5(t)	qSF-5(t)	spikelet fertility (QTL)-5(t)	spikelet fertility (QTL)-5(t)					 Character as QTL - Seed sterility								
5076	qSF-6(t)	qSF-6(t)	spikelet fertility (QTL)-6(t)	spikelet fertility (QTL)-6(t)					 Character as QTL - Seed sterility								
5077	qSF-7(t)	qSF-7(t)	spikelet fertility (QTL)-7(t)	spikelet fertility (QTL)-7(t)					 Character as QTL - Seed sterility								
5078	qSF-8(t)	qSF-8(t)	spikelet fertility (QTL)-8(t)	spikelet fertility (QTL)-8(t)					 Character as QTL - Seed sterility								
5085	qTAA-3-1 (qTAA5-1)	qTAA-3-1 (qTAA5-1)	total amylase activity (QTL)-5-1	total amylase activity (QTL)-5-1					 Character as QTL - Grain quality								
5086	qTAA-3-1 (qTAA6-1)	qTAA-3-1 (qTAA6-1)	total amylase activity (QTL)-6-1	total amylase activity (QTL)-6-1					 Character as QTL - Grain quality								
5098	qTP-1 (tp7b)	qTP-1 (tp7b)	tillers per plant (QTL)-7-2	tillers per plant (QTL)-7-2					 Character as QTL - Yield and productivity								
5108	KO3	OsKO3, OsKOL3	ENT-KAURENE OXIDASE 3	rice ent-kaurene oxidase3	ENT-KAURENE OXIDASE 3		6	This gene encodes one of the GA metabolic enzymes, ent-kaurene oxidase (KO). It is locaated on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5.OsKOL3 may be a pseudogene (Itoh et al, 2004).	 Biochemical character						GO:0010241 - ent-kaurene oxidase activity		
5109	KO4	OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2	ENT-KAURENE OXIDASE 4	rice ent-kaurene oxidase4, cytochrome P450 701A8	ENT-KAURENE OXIDASE 4		6	LOC_Os06g37300 . This gene encodes one of the GA metabolic enzymes, ent-kaurene exidase (KO). It is located on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5. AY579214. OsKO2 in Chen et al. 2015 and Burman et al. 2017, Tang et al. 2018.	 Biochemical character	Os06g0569500	LOC_Os06g37300.2, LOC_Os06g37300.1				GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0009686 - gibberellin biosynthetic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010241 - ent-kaurene oxidase activity, GO:0020037 - heme binding	TO:0002675 - gibberellic acid content	
5110	KO5	OsKO5, OSKOL5, KOS2, CYP701A9	ENT-KAURENE OXIDASE 5	rice ent-kaurene oxidase5, cytochrome P450 701A9	ENT-KAURENE OXIDASE 5		6	This gene encodes one of the GA metabolic enzymes, ent-kaurene oxidase (KO). It is located on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5.AY660664	 Biochemical character	Os06g0568600	LOC_Os06g37224.1				GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010241 - ent-kaurene oxidase activity, GO:0004497 - monooxygenase activity		
5111	KAO	OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1	ENT-KAURENE OXIDASE	rice ent-kaurenoic acid oxidase, ent-kaurenoic acid oxidase, Putative cytochrome P450 DWARF3, reduced pollen elongation1	ENT-KAURENE OXIDASE	oskao-1, oskao-2, oskao-3, kao, kao-1, kao-3, rpe1	6	LOC_Os06g02019. This gene encodes one of the GA metabolic enzymes, ent-kaurenoic acid oxidase (KAO). It is located on chromosome 6 at 2cM. EF577665-EF577669 (wild rice species).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os06g0110000	LOC_Os06g02019.1	GR:0020074			GO:0009686 - gibberellin biosynthetic process, GO:0004497 - monooxygenase activity, GO:0022900 - electron transport chain, GO:0032940 - secretion by cell, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009566 - fertilization, GO:0009685 - gibberellin metabolic process, GO:0009860 - pollen tube growth	TO:0000599 - enzyme activity, TO:0000357 - growth and development trait, TO:0002675 - gibberellic acid content, TO:0000421 - pollen fertility, TO:0000420 - fertility related trait	
5112	GA20OX3	OsGA20ox3, ga20ox3	GIBBERELLIN 20-OXIDASE 3	rice GA 20-oxidase3, GA 20-oxidase 3, gibberellin C-20 oxidase 3, Gibberellin-20 oxidase 3	GIBBERELLIN 20-OXIDASE 3		7	This gene encodes one of the GA metabolic enzymes, GA 20-oxidase (GA20ox), being located on chromosome 7 at 26-31cM. Putative gibberellin 20-dioxygenase.	 Biochemical character	Os07g0169700	LOC_Os07g07420.1	GR:0020081			GO:0009685 - gibberellin metabolic process, GO:0016491 - oxidoreductase activity, GO:0005506 - iron ion binding, GO:0016216 - isopenicillin-N synthase activity, GO:0017000 - antibiotic biosynthetic process	TO:0000599 - enzyme activity, TO:0000357 - growth and development trait	
5113	GA20OX4	OsGA20ox4, ga20ox4	GIBBERELLIN 20-OXIDASE 4	rice GA 20-oxidase4, GA 20-oxidase 4, gibberellin C-20 oxidase 4, Putative gibberellin 20-dioxygenase 4	GIBBERELLIN 20-OXIDASE 4		5	This gene encodes one of the GA metabolic enzymes, GA 20-oxidase (GA20ox), being located on chromosome 5 at 80.3cM. Putative gibberellin 20-dioxygenase. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. CB660961.	 Biochemical character	Os05g0421900	LOC_Os05g34854.2, LOC_Os05g34854.1	GR:0020082			GO:0017000 - antibiotic biosynthetic process, GO:0004181 - metallocarboxypeptidase activity, GO:0006508 - proteolysis, GO:0005506 - iron ion binding, GO:0016216 - isopenicillin-N synthase activity, GO:0009685 - gibberellin metabolic process, GO:0016491 - oxidoreductase activity	TO:0000599 - enzyme activity, TO:0000357 - growth and development trait	
5114	GA2OX1	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1	GIBBERELLIN 2-OXIDASE 1 	rice GA 2-oxidase1, GA 2-oxidase 1, Gibberellin 2-oxidase 1	GIBBERELLIN 2-OXIDASE 1		5	LOC_Os05g06670. This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 5 at 29.1cM. AB059416, BAB40934	 Biochemical character	Os05g0158600	LOC_Os05g06670.1	GR:0020077			GO:0009685 - gibberellin metabolic process, GO:0005506 - iron ion binding, GO:0017000 - antibiotic biosynthetic process, GO:0016216 - isopenicillin-N synthase activity		
5115	GA2OX2	OsGA2ox2, ga2ox 2, OsGA2ox-2	GIBBERELLIN 2-OXIDASE 2	rice GA 2-oxidase2, GA 2-oxidase 2, Gibberellin 2-oxidase 2	GIBBERELLIN 2-OXIDASE 2		1	This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 1 at 67.9cM. LOC_Os01g22910. Os01g0332300 (Yamaguchi 2008) (build3?). Os01g0332200(build5?). AB092484.	 Biochemical character	Os01g0332200	LOC_Os01g22920.1, LOC_Os01g22910.1	GR:0020078			GO:0009685 - gibberellin metabolic process		
5116	GA2OX3	OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4	GIBBERELLIN 2-OXIDASE 3	rice GA 2-oxidase3, GA 2-oxidase 3, Gibberellin 2-oxidase 3	GIBBERELLIN 2-OXIDASE 3		1	This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 1 at 130.1cM. LOC_Os01g55240. GA2ox4 in Mimura et al. 2012.	 Biochemical character,  Vegetative organ - Culm	Os01g0757200	LOC_Os01g55240.1	GR:0020079			GO:0009741 - response to brassinosteroid stimulus, GO:0009685 - gibberellin metabolic process, GO:0009742 - brassinosteroid mediated signaling, GO:0009938 - negative regulation of gibberellic acid mediated signaling	TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height	
5117	SBI	GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4	SHORTENED BASAL INTERNODES	rice GA 2-oxidase4, GA 2-oxidase 4, Gibberellin 2-oxidase 4	GIBBERELLIN 2-OXIDASE 4	SBISV14, SBIZhu1S	5	LOC_Os05g43880. This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 5 at 106cM. EU179387-EU179391 (wild rice species). MF574209  (SBISV14), MF574210 (SBIZhu1S). a semi-dominant gene.	 Biochemical character,  Vegetative organ - Culm	Os05g0514600	LOC_Os05g43880.1	GR:0020080			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0080006 - internode patterning, GO:0009685 - gibberellin metabolic process, GO:0032940 - secretion by cell	TO:0000068 - lodging incidence, TO:0000145 - internode length, TO:0000207 - plant height	PO:0005005 - shoot internode , PO:0009047 - stem 
5120	qBR-1(t) (br1)	qBR-1(t) (br1)	brown rice percentage (QTL)-1(t)	brown rice percentage (QTL)-1(t)			1	This QTL controls brown rice percentage in relation to grain quality, being located on chromosome 1 between markers RM297 and RM315.	 Character as QTL - Grain quality								
5121	qBR-7(t) (br7)	qBR-7(t) (br7)	brown rice percentage (QTL)-7(t)	brown rice percentage (QTL)-7(t)			7	This QTL controls brown rice percentage in relation to grain quality, being located on chromosome 7 between markers RM10 and RM351.	 Character as QTL - Grain quality								
5122	qBR-8(t) (br8)	qBR-8(t) (br8)	brown rice percentage (QTL)-8(t)	brown rice percentage (QTL)-8(t)			8	This QTL controls brown rice percentage in relation to grain quality, being located on chrosomome 8 between markers RM126 and RM137.	 Character as QTL - Grain quality								
5123	qHR-1-2(t) (hr1)	qHR-1-2(t) (hr1)	head rice grain (QTL)-1-2(t)	head rice grain (QTL)-1-2(t)			1	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 1 between markers RM140 and RM5.	 Character as QTL - Grain quality								
5124	qHR-3(t) (hr3)	qHR-3(t) (hr3)	head rice grain (QTL)-3(t)	head rice grain (QTL)-3(t)			3	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 3 between markers RM81B and RM7.	 Character as QTL - Grain quality								
5125	qHR-6(t) (hr6)	qHR-6(t) (hr6)	head rice grain (QTL)-6(t)	head rice grain (QTL)-6(t)			6	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 6 between markers RM190 and RM253.	 Character as QTL - Grain quality								
5126	qHR-8(t) (hr8)	qHR-8(t) (hr8)	head rice grain (QTL)-8(t)	head rice grain (QTL)-8(t)			8	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 8 between markers RM126 and RM137.	 Character as QTL - Grain quality								
5127	qHR-11(t) (hr11)	qHR-11(t) (hr11)	head rice grain (QTL)-11(t)	head rice grain (QTL)-11(t)			11	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 11 between markers RM209 and RM229.	 Character as QTL - Grain quality								
5128	qRB-2(t) (rb2)	qRB-2(t) (rb2)	rice bran percentage (QTL)-2(t)	rice bran percentage (QTL)-2(t)			2	This QTL controls rice bran percentage in relation to grain quality, being located on chromosome 2 between markers RM236 and RM279.	 Character as QTL - Grain quality								
5129	qRB-4(t) (rb4)	qRB-4(t) (rb4)	rice bran percentage (QTL)-4(t)	rice bran percentage (QTL)-4(t)			4	This QTL controls rice bran percentage in relation to grain quality, being located on chromosome 4 between markers RM349 and RM131.	 Character as QTL - Grain quality								
5130	qRB-7(t) (rb7)	qRB-7(t) (rb7)	rice bran percentage (QTL)-7(t)	rice bran percentage (QTL)-7(t)			7	This QTL controls rice bran percentage in relation to grain quality, being located on chromosome 7 between markers RM10 and RM351.	 Character as QTL - Grain quality								
5131	qRB-10(t) (rb10)	qRB-10(t) (rb10)	rice bran percentage (QTL)-10(t)	rice bran percentage (QTL)-10(t)			10	This QTL controls rice bran percentage in relation to grain quality, being located on chromosome 10 between markers RM184 and RM171.	 Character as QTL - Grain quality								
5132	qMR-5(t) (mr5)	qMR-5(t) (mr5)	milled rice percentage (QTL)-5(t)	milled rice percentage (QTL)-5(t)			5	This QTL controls milled rice percentage in relation to grain quality, being located on chromosome 5 between markers RM188 and RM26.	 Character as QTL - Grain quality								
5133	qMR-7(t) (mr7)	qMR-7(t) (mr7)	milled rice percentage (QTL)-7(t)	milled rice percentage (QTL)-7(t)			7	This QTL controls milled rice percentage in relation to grain quality, being located on chromosome 7 between markers RM125 and RM11.	 Character as QTL - Grain quality								
5134	qAMY-3(t) (amy3)	qAMY-3(t) (amy3)	amylose content (QTL)-3(t)	amylose content (QTL)-3(t)			3	This QTL controls amylose content of grain, being located on chromosome 3 between markers RM7 and RM251.	 Character as QTL - Grain quality								
5135	qAMY-6(t) (amy6)	qAMY-6(t) (amy6)	amylose content (QTL)-6(t)	amylose content (QTL)-6(t)			6	This QTL controls amylose content of grain, being located on chromosome 6 between markers RM190 and RM253.	 Character as QTL - Grain quality								
5136	qAMY-8(t) (amy8)	qAMY-8(t) (amy8)	amylose content (QTL)-8(t)	amylose content (QTL)-8(t)			8	This QTL controls amylose content of grain, being located on chromosome 8 between markers RM230 and RM264.	 Character as QTL - Grain quality								
5137	qALK-6-1(t) (alk6-1)	qALK-6-1(t) (alk6-1)	alkali spreading score (QTL)-6-1(t)	alkali spreading score (QTL)-6-1(t)			6	This QTL controls alkali spreading score of grain, being located on chromosome 6 between markers RM190 and RM253.	 Character as QTL - Grain quality								
5138	qALK-6-2(t) (alk6-2)	qALK-6-2(t) (alk6-2)	alkali spreading score (QTL)-6-2(t)	alkali spreading score (QTL)-6-2(t)			6	This QTL controls alkali spreading score of grain, being located on chromosome 6 between markers RM253 and RM162	 Character as QTL - Grain quality								
5139	qPRO-1(t) (pro1)	qPRO-1(t) (pro1)	protein content (QTL)-1(t)	protein content (QTL)-1(t)			1	This QTL controls protein content of grain, being located on chromosome 1 between markers RM226 and RM297.	 Character as QTL - Grain quality								
5140	qPRO-2(t) (pro2)	qPRO-2(t) (pro2)	protein content (QTL)-2(t)	protein content (QTL)-2(t)			2	This QTL controls protein content of grain, being located on chromosome 2 between markers RM6 amd RM112.	 Character as QTL - Grain quality								
5141	qPRO-6(t) (pro6)	qPRO-6(t) (pro6)	protein content (QTL)-6(t)	protein content (QTL)-6(t)			6	This QTL controls protein content of grain, being located on chromosome 6 between markers RM190 and RM253.	 Character as QTL - Grain quality								
5142	qPRO-11(t) (pro11)	qPRO-11(t) (pro11)	protein content (QTL)-11(t)	protein content (QTL)-11(t)			11	This QTL controls protein content of grain, being located on chromosome 11 between markers RM209 and RM229.	 Character as QTL - Grain quality								
5143	qGL-3(t) (gl3)	qGL-3(t) (gl3)	grain length (QTL)-3(t)	grain length (QTL)-3(t)			3	This QTL controls grain length in relation to grain quality, being located on chromosome 3 between markers RM251 and RM338.	 Character as QTL - Grain quality								
5144	qGL-6(t) (gl6)	qGL-6(t) (gl6)	grain length (QTL)-6(t)	grain length (QTL)-6(t)			6	This QTL controls grain length in relation to grain quality, being located on chromosome 6 between markers RM162 and RM30.	 Character as QTL - Grain quality								
5145	qLWR-1(t) (lwr1)	qLWR-1(t) (lwr1)	grain length/width ratio (QTL)-1(t)	grain length/width ratio (QTL)-1(t)			1	This QTL controls grain length/width ratio in relation to grain quality, being located on chromosome 1 between markers RM5 and RM246.	 Character as QTL - Grain quality								
5146	qLWR-6(t) (lwr6)	qLWR-6(t) (lwr6)	grain length/width ratio (QTL)-6(t)	grain length/width ratio (QTL)-6(t)			6	This QTL controls grain length/width ratio in relation to grain quality, being located on chromosome 6 between markers RM253 and RM162.	 Character as QTL - Grain quality								
5147	qPH-1-6(t) (qPH1)	qPH-1-6(t) (qPH1)	plant height (QTL)-1-6(t)	plant height (QTL)-1-6(t)			1	This QTL controls plant height at 30 days after sowing, being located on chromosome 1 between markers RG173 and RM81A.	 Character as QTL - Plant growth activity								
5148	qPH-2-1(t)	qPH-2-1(t)	plant height (QTL)-2-1(t)	plant height (QTL)-2-1(t)			2	This QTL controls plant height at 40 days after sowing, being located on chromosome 2 between markers RM207 and RM48.	 Character as QTL - Plant growth activity								
5149	qPH-4-5 (t) (qPH4)	qPH-4-5 (t) (qPH4)	plant height (QTL)-4-5(t)	plant height (QTL)-4-5(t)			4	This QTL controls plant height at 40 days after sowing, being located on chromosome 4 between markers RM241 and G102.	 Character as QTL - Plant growth activity								
5150	qPH-5-4(t) (qPH5)	qPH-5-4(t) (qPH5)	plant height (QTL)-5-4(t)	plant height (QTL)-5-4(t)			5	This QTL controls plant height at 30 days after sowing, being located on chromosome 5 between markers R3166 and RG360.	 Character as QTL - Plant growth activity								
5151	qPH-6-3(t) (qPH6)	qPH-6-3(t) (qPH6)	plant height (QTL)-6-3(t)	plant height (QTL)-6-3(t)			6	This QTL controls plant height at 40 days after sowing, being located on chromosome 6 between markers C688 and R1952b.	 Character as QTL - Plant growth activity								
5152	qPH-10-2(t) (qPH10)	qPH-10-2(t) (qPH10)	plant height (QTL)-10-2(t)	plant height (QTL)-10-2(t)			10	This QTL controls plant height at 40 days after sowing, being located on chromosome 10 between markers RM228 and C405a.	 Character as QTL - Plant growth activity								
5153	qPH-11-3(t) (qPH11)	qPH-11-3(t) (qPH11)	plant height (QTL)-11-3(t)	plant height (QTL)-11-3(t)			11	This QTL controls plant height at 30 days after sowing, being located on chromosome 11 between markers RG118 and C794.	 Character as QTL - Plant growth activity								
5154	qMRL-3-1(t) (qMRL3)	qMRL-3-1(t) (qMRL3)	maximum root length (QTL)-3-1(t)	maximum root length (QTL)-3-1(t)			3	This QTL controls maximum root length at 40 days after sowing, being located on chromosome 3 between markers C316 and C63.	 Character as QTL - Root activity								
5155	qMRL-5-2(t) (qMRL5)	qMRL-5-2(t) (qMRL5)	maximum root length (QTL)-5-2(t)	maximum root length (QTL)-5-2(t)			5	This QTL controls maximum root length at 30 and 40 days after sowing, being located on chromosome 5 between markers R830 and R3166.	 Character as QTL - Root activity								
5156	qMRL-7-1(t) (qMRL7)	qMRL-7-1(t) (qMRL7)	maximum root length (QTL)-7-1(t)	maximum root length (QTL)-7-1(t)			7	This QTL controls maximum root length at 30 days after sowing, being located on chromosome 7 between markers RM234 and R1789.	 Character as QTL - Root activity								
5157	qMRL-10-1(t) (qMRL10)	qMRL-10-1(t) (qMRL10)	maximum root length (QTL)-10-1(t)	maximum root length (QTL)-10-1(t)			10	This QTL controls maximum root length at 40 days after sowing, being located on chromosome 10 between markers C1633 and C677.	 Character as QTL - Root activity								
5158	qMRL-11-1(t) (qMRL11)	qMRL-11-1(t) (qMRL11)	maximum root length (QTL)-11-1(t)	maximum root length (QTL)-11-1(t)			11	This QTL controls maximum root length at 30 days after sowing, being located on chromosome 11 between markers C794 and R2918.	 Character as QTL - Root activity								
5159	qMRL-11-2(t) (qwMRL11)	qMRL-11-2(t) (qwMRL11)	maximum root length (QTL)-11-2(t)	maximum root length (QTL)-11-2(t)			11	This QTL controls maximum root length at 40 days after sowing, being located on chromosome 11 between markers RM254 and G4001.	 Character as QTL - Root activity								
5160	qSPW	qSDW-1-2(t) (qSDW1)	SHOOT DRY WEIGHT  QTL	shoot dry weight (QTL)-1-2(t)	PMADS BOX PROTEIN 16 		1	This QTL controls shoot dry weight at 40 days after sowing, being located on chromosome 1 between markers C2340 and C86.	 Character as QTL - Plant growth activity								
5161	qSDW-2-1(t) (qSDW2)	qSDW-2-1(t) (qSDW2)	shoot dry weight (QTL)-2-1(t)	shoot dry weight (QTL)-2-1(t)			2	This QTL controls shoot dry weight at 30 days after sowing, being located on chromosome 2 between markers RM240 and RM213.	 Character as QTL - Plant growth activity								
5162	qSDW-3-2(t) (qSDW3)	qSDW-3-2(t) (qSDW3)	shoot dry weight (QTL)-3-2(t)	shoot dry weight (QTL)-3-2(t)			3	This QTL controls shoot dry weight at 40 days after sowing, being located on chromosome 3 between markers RG393 and C1087.	 Character as QTL - Plant growth activity								
5163	qSDW-5-3(t) (qSDW5)	qSDW-5-3(t) (qSDW5)	shoot dry weight (QTL)-5-3(t)	shoot dry weight (QTL)-5-3(t)			5	This QTL controls shoot dry weight at 30 and 40 days after sowing, being located on chromosome 5 between markers R3166 and RG360.	 Character as QTL - Plant growth activity								
5164	qSDW-10-1(t) (qSDW10)	qSDW-10-1(t) (qSDW10)	shoot dry weight (QTL)-10-1(t)	shoot dry weight (QTL)-10-1(t)			10	This QTL controls shoot dry weight at 40 days after sowing, being located on chromosome 10 between markers RG561 and RM288.	 Character as QTL - Plant growth activity								
5165	qSDW-11-1(t) (qSDW11)	qSDW-11-1(t) (qSDW11)	shoot dry weight (QTL)-11-1(t)	shoot dry weight (QTL)-11-1(t)			11	This QTL controls shoot dry weight at 30 days after sowing, being located on chromosome 11 between markers RG118 and C794.	 Character as QTL - Plant growth activity								
5166	qRDW-2-1(t) (qRDW2)	qRDW-2-1(t) (qRDW2)	root dry weight (QTL)-2-1(t)	root dry weight (QTL)-2-1(t)			2	This QTL controls root dry weight at 30days after sowing, being located on chromosome 2 between markers RM240 and RM213.	 Character as QTL - Root activity								
5167	qRDW-3-1(t) (qRDW3)	qRDW-3-1(t) (qRDW3)	root dry weight (QTL)-3-1(t)	root dry weight (QTL)-3-1(t)			3	This QTL controls root dry weight at 40 days after sowing, being located on chromosome 3 betwen markers RZ403 and R19.	 Character as QTL - Root activity								
5168	qRDW-4-1(t) (qRDW4)	qRDW-4-1(t) (qRDW4)	root dry weight (QTL)-4-1(t)	root dry weight (QTL)-4-1(t)			4	This QTL controls root dry weight at 40 days after sowing, being located on chromosome 4 between markers C820 and C933.	 Character as QTL - Root activity								
5169	qRDW-5-3(t) (qRDW5)	qRDW-5-3(t) (qRDW5)	root dry weight (QTL)-5-3(t)	root dry weight (QTL)-5-3(t)			5	This QTL controls root dry weight at 30 days after sowing, being located on chromosome 5 between markers R830 and R3166.	 Character as QTL - Root activity								
5170	qRDW-5-4(t) (qRDW5)	qRDW-5-4(t) (qRDW5)	root dry weight (QTL)-5-4(t)	root dry weight (QTL)-5-4(t)			5	This QTL controls root dry weight at 40 days after sowing, being located on chromosome 5 between markers R3166 and RG360.	 Character as QTL - Root activity								
5171	qRDW-10-2(t) (qRDW10)	qRDW-10-2(t) (qRDW10)	root dry weight (QTL)-10-2(t)	root dry weight (QTL)-10-2(t)			10	This QTL controls root dry weight at 40 days after sowing, being located on chromosome 10 between markers RM228 and C405a.	 Character as QTL - Root activity								
5172	qRDW-11-1(t) (qRDW11)	qRDW-11-1(t) (qRDW11)	root dry weight (QTL)-11-1(t)	root dry weight (QTL)-11-1(t)			11	This QTL controls root dry weight at 30 days after sowing, being located on chromosome 11 between markers RG118 and C794.	 Character as QTL - Root activity								
5173	qTDW-2-1(t) (qTDW2)	qTDW-2-1(t) (qTDW2)	total dry weight (QTL)-2-1(t)	total dry weight (QTL)-2-1(t)			2	This QTL controls total dry weight at 30 days after sowing, being located on chromosome 2 between markers RM240 and RM213.	 Character as QTL - Plant growth activity								
5174	qTDW-3-2(t) (qTDW3)	qTDW-3-2(t) (qTDW3)	total dry weight (QTL)-3-2(t)	total dry weight (QTL)-3-2(t)			3	This QTL controls total dry weight at 40 days after sowing, being located on chromosome 3 between markers RZ403 and R19.	 Character as QTL - Plant growth activity								
5175	qTDW-10-1(t) (qTDW10)	qTDW-10-1(t) (qTDW10)	total dry weight (QTL)-10-1(t)	total dry weight (QTL)-10-1(t)			10	This QTL controls total dry weight at 40 days after sowing, being located on chromosome 10 between markers RM228 and C405a.	 Character as QTL - Plant growth activity								
5176	qTDW-11-1(t)  (qTDW11)	qTDW-11-1(t)  (qTDW11)	total dry weight (QTL)-11-1(t)	total dry weight (QTL)-11-1(t)			11	This QTL controls total dry weight at 30 days after sowing, being located on chromosome 11 between markers RG118 and C794.	 Character as QTL - Plant growth activity								
5177	qRSR-4-1(t) (qRSR4)	qRSR-4-1(t) (qRSR4)	rooot-shoot ratio (QTL)-4-1(t)	rooot-shoot ratio (QTL)-4-1(t)			4	This QTL controls root-shoot ratio at 40 days after sowing, being located on chromosome 4 between markers C820 and C933.	 Character as QTL - Plant growth activity								
5178	qRSR-11-1(t) (qRSR11)	qRSR-11-1(t) (qRSR11)	root-shoot ratio (QTL)-11-1(t)	root-shoot ratio (QTL)-11-1(t)			11	This QTL controls root-shoot ratio at 30 days after sowing, being located on chromosome 11 between markers RM224 and Y6854L.	 Character as QTL - Plant growth activity								
5179	qPHYLCHR-4-1(t) (phyllochron)	qPHYLCHR-4-1(t) (phyllochron)	phyllochron (QTL)-4-1(t)	phyllochron (QTL)-4-1(t)			4	This QTL controls the time interval between the appearance of successive leaves, phyllochron, being located on chromosome 4 between markers, C891 and RM3524.	 Character as QTL - Plant growth activity								
5180	qPHYLCHR-10-1(t) (phyllochron)	qPHYLCHR-10-1(t) (phyllochron)	phyllochron (QTL)-10-1(t)	phyllochron (QTL)-10-1(t)			10	This QTL controls the time interval between the apperarnce of successive leaves, phyllochron, being located on chromosome 10 between markers, R1629 and R2447.	 Character as QTL - Plant growth activity								
5181	qPHYLCHR-11-1(t) (phyllochron)	qPHYLCHR-11-1(t) (phyllochron)	phyllochron (QTL)-11-1(t)	phyllochron (QTL)-11-1(t)			11	This QTL controls the time interval between the appearance of successive leaves, phyllochron, being located on chromosome 11 between markers, R3202 and C1350.	 Character as QTL - Plant growth activity								
5182	qTN-2-1(t) (Tiller number)	qTN-2-1(t) (Tiller number)	tiller number (QTL)-2-1(t)	tiller number (QTL)-2-1(t)			2	This QTL controls the tiller number, being located on chromosome 2 between markers, R26 and C424.	 Character as QTL - Plant growth activity								
5183	qTN-5-1(t) (tiller number)	qTN-5-1(t) (tiller number)	tiller number (QTL)-5-1(t)	tiller number (QTL)-5-1(t)			5	This QTL controls the tiller number, being located on chromosome 5 between markers, RM440 and RM3870.	 Character as QTL - Plant growth activity								
5184	qTN-6-1(t) (tiller number)	qTN-6-1(t) (tiller number)	tiller number (QTL)-6-1(t)	tiller number (QTL)-6-1(t)			6	This QTL controls the tiller number, being located on chromosome 6 between markers, RM217 and R2147.	 Character as QTL - Plant growth activity								
5185	qTN-8-1(t) (tiller number)	qTN-8-1(t) (tiller number)	tiller number (QTL)-8-1(t)	tiller number (QTL)-8-1(t)			8	This QTL controls the tiller number, being located on chromosome 8 between markers, RM264 and R1963.	 Character as QTL - Plant growth activity								
5186	qT2DM-2-1(t)	qT2DM-2-1(t)	T2 tiller dormancy (QTL)-2-1(t)	T2 tiller dormancy (QTL)-2-1(t)			2	This QTL controls the dormancy of T2 tiller, being located on chromosome 2 between markers, RM166 and C1445.	 Character as QTL - Plant growth activity								
5187	qT2DM-6-1(t)	qT2DM-6-1(t)	T2 tiller dormancy (QTL)-6-1(t)	T2 tiller dormancy (QTL)-6-1(t)			6	This QTL controls the dormancy of T2 tiller, being located on chromosome 6 between markers, R2147 and R2171.	 Character as QTL - Plant growth activity								
5188	qT2pDM-2-1(t)	qT2pDM-2-1(t)	T2p tiller dormancy (QTL)-2-1(t)	T2p tiller dormancy (QTL)-2-1(t)			2	This QTL controls the dormancy of T2-p tiller, being located on chromosome 2 between markers C424 and C747.	 Character as QTL - Plant growth activity								
5189	qT22DM-2-1(t)	qT22DM-2-1(t)	T22 tiller dormancy (QTL)-2-1(t)	T22 tiller dormancy (QTL)-2-1(t)			2	This QTL controls the dormancy of T2-2 tiller, being located on chromosome 2 between markers, C424 and C747.	 Character as QTL - Plant growth activity								
5190	qT22DM-5-1(t) qT22D qT22DM-5-1(t)	qT22DM-5-1(t) qT22D qT22DM-5-1(t)	T22 tiller dormancy (QTL)-5-1(t)	T22 tiller dormancy (QTL)-5-1(t)			5	This QTL controls the dormancy of T2-2 tiller,  being located on chromosome 5 between markers, RM3870 and C1018.	 Character as QTL - Plant growth activity								
5191	qT3pDM-1-1(t)	qT3pDM-1-1(t)	T3p tiller dormancy (QTL)-1-1(t)	T3p tiller dormancy (QTL)-1-1(t)			1	This QTL controls the dormancy of T3-p tiller, being located on chromosome 1 between markers C86 and C742.	 Character as QTL - Plant growth activity								
5192	qT31DM-2-1(t)	qT31DM-2-1(t)	T31 tiller dormancy (QTL)-2-1(t)	T31 tiller dormancy (QTL)-2-1(t)			2	This QTL controls the dormancy of T3-1 tiller, being located on chromosome 2 between markers, C424 and C747.	 Character as QTL - Plant growth activity								
5193	qT31DM-5-1(t)	qT31DM-5-1(t)	T31 tiller dormancy (QTL)-5-1(t)	T31 tiller dormancy (QTL)-5-1(t)			5	This QTL controls the dormancy of T3-1 tiller, being located on chromosome 5 between markers, RM3870 and C1018.	 Character as QTL - Plant growth activity								
5194	qT4pDM-1-1(t)	qT4pDM-1-1(t)	T4p tiller dormancy (QTL)-1-1(t)	T4p tiller dormancy (QTL)-1-1(t)			1	This QTL controls the dormancy of T4-p tiller, being located on chromosome 1 between markers, C742 and R117.	 Character as QTL - Plant growth activity								
5195	qT4pDM-3-1(t)	qT4pDM-3-1(t)	T4p tiller dormancy (QTL)-3-1(t)	T4p tiller dormancy (QTL)-3-1(t)			3	This QTL controls the dormancy of T4-p tiller, being located on chromosome 3 between markers, R356 and R2170.	 Character as QTL - Plant growth activity								
5196	qPHO-6(t)	qPHO-6(t)	phosphorous deficiency tolerance (QTL)-6(t)	phosphorous deficiency tolerance (QTL)-6(t)			6	This QTL controls phosphorous deficiency tolerance, being located on chromosome 6.	 Tolerance and resistance - Stress tolerance			GR:0061495					
5197	qNFP-2-1(t)	qNFP-2-1(t)	Number of florets per panicle (QTL)-2-1(t)	Number of florets per panicle (QTL)-2-1(t)			2	This QTL controls the floret number per panicle, being located on chromosome 2 between markers RM3421 and RM7286.	 Character as QTL - Yield and productivity								
5198	qNPBP-2-1(t)	qNPBP-2-1(t)	Number of primary branches per panicle (QTL)-2-1(t)	Number of primary branches per panicle (QTL)-2-1(t)			2	This QTL controls the primary branch number per panicle, being located on chromosome 2 between markers RM3421 and RM7286.	 Character as QTL - Yield and productivity								
5199	qNPBP-4-1(t)	qNPBP-4-1(t)	Number of primary branches per panicle (QTL)-4-1(t)	Number of primary branches per panicle (QTL)-4-1(t)			4	This QTL controls the primary branch number per panicle, being located on chromosome 4 between markers RM303 and RM348.	 Character as QTL - Yield and productivity								
5200	qNFPB-9-1(t)	qNFPB-9-1(t)	Number of florets per primary branch (QTL)-9-1(t)	Number of florets per primary branch (QTL)-9-1(t)			9	This QTL controls the floret number per primary branch, being located on chromosome 9 between markers RM5657 and RM566.	 Character as QTL - Yield and productivity								
5201	qNFPB-11-1(t)	qNFPB-11-1(t)	Number of florets per primary branch (QTL)-11-1(t)	Number of florets per primary branch (QTL)-11-1(t)			11	This QTL controls the floret number per primary branch, being located on chromosome 11 between markers RM286 and RM332.	 Character as QTL - Yield and productivity								
5202	qFPFFA-1-1(t)	qFPFFA-1-1(t)	Frequency of pre-flowering floret abortion (QTL)-1-1(t)	Frequency of pre-flowering floret abortion (QTL)-1-1(t)			1	This QTL controls the frequency of pre-flowering floret abortion, being located on chromosome 1 between markers RM1297 and RM297.	 Character as QTL - Yield and productivity								
5203	qFPFFA-10-1(t)	qFPFFA-10-1(t)	Frequency of pre-flowering floret abortion (QTL)-10-1(t)	Frequency of pre-flowering floret abortion (QTL)-10-1(t)			10	This QTL controls the frequency of pre-flowering floret abortion, being located on chromosome 10 between markers RM171 and RM333.	 Character as QTL - Yield and productivity								
5204	qFPFFA-11-1(t)	qFPFFA-11-1(t)	Frequency of pre-flowering floret abortion (QTL)-11-1(t)	Frequency of pre-flowering floret abortion (QTL)-11-1(t)			11	This QTL controls the frequency of pre-flowering floret abortion, being located on chromosome 11 between markers RM5599 and RM441.	 Character as QTL - Yield and productivity								
5205	qPNN-2-1(t) (Pnn1)	qPNN-2-1(t) (Pnn1)	panicle number (QTL)-2-1(t)	panicle number (QTL)-2-1(t)			2	This QTL controls panicle number, nitrogen use efficiency and yield,  asssociated with the protein content of GS1 (cytosolic glutamine synthetase), being located on chromosome 2 between markers 2-S152 and 2-S173.	 Character as QTL - Yield and productivity								
5206	qLT-8-1(t) (qLT-8)	qLT-8-1(t) (qLT-8)	Luster of cooked rice (QTL)-8-1(t)	Luster of cooked rice (QTL)-8-1(t)			8	This QTL controls a luster of cooked rice, being located on chromosome 8 between markers G1149 and XNpb41.	 Character as QTL - Grain quality								
5207	qLT-4-1(t) (qLT-4)	qLT-4-1(t) (qLT-4)	Luster of cooked rice (QTL)-4-1(t)	Luster of cooked rice (QTL)-4-1(t)			4	This QTL controls a luster of cooked rice, being located on chromosome 4 between markers C445 and Ky4.	 Character as QTL - Grain quality								
5208	qLT-6-1(t) (qLT-6)	qLT-6-1(t) (qLT-6)	Luster of cooked rice (QTL)-6-1(t)	Luster of cooked rice (QTL)-6-1(t)			6	This QTL controls a luster of cooked rice, being located on chromosome 6 between markers XNpb209 and C688.	 Character as QTL - Grain quality								
5209	qST-8-1(t) (qST-8)	qST-8-1(t) (qST-8)	Scent of cooked rice (QTL)-8-1(t)	Scent of cooked rice (QTL)-8-1(t)			8	This QTL controls a scent of cooked rice, being located on chromosome 8 between markers G1149 and XNpb41.	 Character as QTL - Grain quality								
5210	qST-4-1(t) (qST-4)	qST-4-1(t) (qST-4)	scent of cooked rice (QTL)-4-1(t)	scent of cooked rice (QTL)-4-1(t)			4	This QTL controls a scent of cooked rice, being located on chromosome 4 between markers C445 and Ky4.	 Character as QTL - Grain quality								
5211	qTD-6-1(t) (qTD-6)	qTD-6-1(t) (qTD-6)	tenderness of cooked rice (QTL)-6-1(t)	tenderness of cooked rice (QTL)-6-1(t)			6	This QTL controls tenderness of cooked rice, being located on chromosome 6 between markers XNpb209 and C688.	 Character as QTL - Grain quality								
5212	qTD-8-1(t) (qTD-8)	qTD-8-1(t) (qTD-8)	tenderness of cooked rice (QTL)-8-1(t)	tenderness of cooked rice (QTL)-8-1(t)			8	This QTL controls tenderness of cooked rice, being located on chromosome 8 between markers G1149 and R727.	 Character as QTL - Grain quality								
5213	qVC-4-1(t) (qVC-4)	qVC-4-1(t) (qVC-4)	viscosity of cooked rice (QTL)-4-1(t)	viscosity of cooked rice (QTL)-4-1(t)			4	This QTL controls viscosity of cooked rice, being located on chromosome 4 between markers C445 and Ky4.	 Character as QTL - Grain quality								
5214	qVC-6-1(t) (qVC-6)	qVC-6-1(t) (qVC-6)	viscosity of cooked rice (QTL)-6-1(t)	viscosity of cooked rice (QTL)-6-1(t)			6	This QTL controls viscosity of cooked rice, being located on chromosome 6 between markers XNpb209 and C688.	 Character as QTL - Grain quality								
5215	qEL-3-1(t) (qEL-3)	qEL-3-1(t) (qEL-3)	elasticity of cooked rice (QTL)-3-1(t)	elasticity of cooked rice (QTL)-3-1(t)			3	This QTL controls elasticity of cooked rice, being located on chromosome 3 between markers C1677 and R19.	 Character as QTL - Grain quality								
5216	qEL-8-1(t) (qEL-8)	qEL-8-1(t) (qEL-8)	elasticity of cooked rice (QTL)-8-1(t)	elasticity of cooked rice (QTL)-8-1(t)			8	This QTL controls elasticity of cooked rice, being located on chromosome 8 between markers G1149 and R727.	 Character as QTL - Grain quality								
5217	qIVOE-8-1(t) (qIVOE-8)	qIVOE-8-1(t) (qIVOE-8)	integrated value of organoleptic evaluation (QTL)-8-1(t)	integrated value of organoleptic evaluation (QTL)-8-1(t)			8	This QTL controls integrated value of organoleptic evaluation, being located on chromosome 8 between markers G1149 and R727.	 Character as QTL - Grain quality								
5218	qAC-8-1(t) (qAC-8)	qAC-8-1(t) (qAC-8)	amylose content (QTL)-8-1(t)	amylose content (QTL)-8-1(t)			8	This QTL controls amylose content of cooked rice, being located on chromosome 8 between markers G1149 and R727.	 Character as QTL - Grain quality								
5219	qAC-9-1(t) (qAC-9a)	qAC-9-1(t) (qAC-9a)	amylose content (QTL)-9-1(t)	amylose content (QTL)-9-1(t)			9	This QTL controls amylose content of cooked rice, being located on chromosome 9 between markers XNpb36 and XNpb103.	 Character as QTL - Grain quality								
5220	qAC-9-2(t) (qAC-9b)	qAC-9-2(t) (qAC-9b)	amylose content (QTL)-9-2(t)	amylose content (QTL)-9-2(t)			9	This QTL controls amylose content of cooked rice, being located on chromosome 9 between markers C609 and C506.	 Character as QTL - Grain quality								
5221	qAC-12-1(t) (qAC-12)	qAC-12-1(t) (qAC-12)	amylose content (QTL)-12-1(t)	amylose content (QTL)-12-1(t)			12	This QTL controls amylose content of cooked rice, being located on chromosome 12 between markers XNpb189-2 and XNpb24-2.	 Character as QTL - Grain quality								
5222	qGT-3-1(t) (qGT-3)	qGT-3-1(t) (qGT-3)	geratinization temperature (QTL)-3-1(t)	geratinization temperature (QTL)-3-1(t)			3	This QTL controls gelatinization temperature of cooked rice grain, being located on chromosome 3 between markers C1677 and R3156.	 Character as QTL - Grain quality								
5223	qGT-1-1(t) (qGT-1)	qGT-1-1(t) (qGT-1)	gelatinization temperature (QTL)-1-1(t)	gelatinization temperature (QTL)-1-1(t)			1	This QTL controls gelatinization temperature of cooked rice grain, being located on chromosome 1 between markers C955 and C970.	 Character as QTL - Grain quality								
5224	qGT-6-1(t) (qGT-6)	qGT-6-1(t) (qGT-6)	gelatinization temperature (QTL)-6-1(t)	gelatinization temperature (QTL)-6-1(t)			6	This QTL controls gelatinization temperature of cooked rice grain, being located on chromosome 6 between markers C688 and R2171.	 Character as QTL - Grain quality								
5225	qGC-4-1(t) (qGC-4)	qGC-4-1(t) (qGC-4)	gel consistency (QTL)-4-1(t)	gel consistency (QTL)-4-1(t)			4	This QTL controls gel consistency of cooked rice grain, being located on chromosome 4 between markers C445 and Ky4.	 Character as QTL - Grain quality								
5226	qGC-6-4(t) (qGC-6)	qGC-6-4(t) (qGC-6)	gel consistency (QTL)-6-4(t)	gel consistency (QTL)-6-4(t)			6	This QTL controls gel consistency of cooked rice grain, being located on chromosome 6 between markers XNpb209 and C688.	 Character as QTL - Grain quality								
5227	qGC-11-1(t) (qGC-11)	qGC-11-1(t) (qGC-11)	gel consistency (QTL)-11-1(t)	gel consistency (QTL)-11-1(t)			11	This QTL controls gel consistency of cooked rice grain, being located on chromosome 11 between markers XNpb257 and C1350.	 Character as QTL - Grain quality								
5228	qGC-3-1(t) (qGC-3)	qGC-3-1(t) (qGC-3)	gel consistency (QTL)-3-1(t)	gel consistency (QTL)-3-1(t)			3	This QTL controls gel consistency of cooked rice grain, being located on chromosome 3 between markers C1677 and R3156.	 Character as QTL - Grain quality								
5229	qGC-5-1(t) (qGC-5)	qGC-5-1(t) (qGC-5)	gel consistency (QTL)-5-1(t)	gel consistency (QTL)-5-1(t)			5	This QTL controls gel consistency of cooked rice grain, being located on chromosome 5 between markers C263 and R3166.	 Character as QTL - Grain quality								
5230	BPH14	Bph14 (Qbp1), Bph14, Qbp1, qBPH-3	BROWN PLANTHOPPER RESISTANCE 14	brown planthopper resistance 14, Brown planthopper resistance-14, BROWN PLANTHOPPER RESISTANCE14			3	LOC_Os03g63150. This brown planthopper resistant gene was introduced from O. officinalis in China. This gene is located on the long arm of chromosome 3 flanked by RFLP markers R1925 and G1318. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.FJ941067, Bph14 encodes a coiled-coil, nucleotide-binding, and leucine-rich repeat (CC-NB-LRR) protein.Bph14 shares 83% sequence identity with its allele (Os03g0848700) in Nipponbare.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os03g0848700	LOC_Os03g63150.2, LOC_Os03g63150.1	GR:0060102			GO:0009625 - response to insect, GO:0002213 - defense response to insect, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
5231	BPH15	Bph15 (Qbp2), Bph15, Qbp2, qBPH-4	BROWN PLANTHOPPER RESISTANCE 15	brown planthopper resistance 15, Brown planthopper resistance-15, Brown planthopper resistance introduced from Oryza australiensis			4	This brown planthopper resistant gene was introduced from O. officinalis in China.  This gene is located on the short arm of chromosome 4 flanked by RFLP markers C820 and S11182. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0061067			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
5232	qPF-5-1(t) (pf5)	qPF-5-1(t) (pf5)	pollen fertility (QTL)-5-1(t)	pollen fertility (QTL)-5-1(t)			5	This QTL controls pollen fertility in japonica and indica cross, being located on chromosome 5 between markers MRG1010 and RM13.	 Character as QTL - Seed sterility								
5233	qPF-12-1(t) (pf12)	qPF-12-1(t) (pf12)	pollen fertility (QTL)-12-1(t)	pollen fertility (QTL)-12-1(t)			12	This QTL controls pollen fertility in japonica and indica cross, being located on chromosome 12 between markers RM19 and RM247.	 Character as QTL - Seed sterility								
5234	qEF-6-1(t) (Ef6, S5)	qEF-6-1(t) (Ef6, S5)	embryo sac fertility (QTL)-6-1(t)	embryo sac fertility (QTL)-6-1(t)			6	This QTL controls embryo sac fertility in japonica and indica cross, being located on chromosome 6 between markers C11 and RM276. This QTL corresponds well with the previously reported wide compatibility gene S5.	 Character as QTL - Seed sterility								
5235	qSPF-5-1(t) (spf5)	qSPF-5-1(t) (spf5)	spikelet fertility (QTL)-5-1(t)	spikelet fertility (QTL)-5-1(t)			5	This QTL controls spikelet fertility in japonica and indica cross, being located on chromosome 5 between markers RM13 andRM405.	 Character as QTL - Seed sterility								
5236	qSPF-6-1(t) (spf6)	qSPF-6-1(t) (spf6)	spikelet fertility (QTL)-6-1(t)	spikelet fertility (QTL)-6-1(t)			6	This QTL controls spikelet fertility in japonica and indica cross, being located on chromosome 6 between markers RG213 and RM557.	 Character as QTL - Seed sterility								
5237	qSPF-8-1(t) (spf8)	qSPF-8-1(t) (spf8)	spikelet fertility (QTL)-8-1(t)	spikelet fertility (QTL)-8-1(t)			8	This QTL controls spikelet fertility in japonica and indica cross, being located on chromosome 8 between markers H4698-1 and H3878-1.	 Character as QTL - Seed sterility								
5238	HSA3	hsa3(t)	FEMALE STERILITY3(T)	female sterility3(t)		hsa3-AS	9	Female sterility is caused by epistatic interaction among hsa1-IR (indica), hsa2-AS and hsa3-AS (japonica) in japonica-indica cross. This gene is located on chromosome 9 in the vicinity of marker RM285.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness						GO:0007275 - multicellular organismal development		
5239	qHD-1-1(t) (Hd1a)	qHD-1-1(t) (Hd1a)	heading date (QTL)-1-1(t)	heading date (QTL)-1-1(t)			1	This QTL controls heading date, being located on chromosome 1 between markers C112 and RG236.	 Reproductive organ - Heading date								
5240	qHD-1-2(t) (QHd1b)	qHD-1-2(t) (QHd1b)	heading date (QTL)-1-2(t)	heading date (QTL)-1-2(t)			1	This QTL controls heading date, being located on chromosome 1 between markers RG532 and RG140.	 Reproductive organ - Heading date								
5241	qHD-3-4(t) (QHd3b)	qHD-3-4(t) (QHd3b)	heading date (QTL)-3-4(t)	heading date (QTL)-3-4(t)			3	This QTL controls heading date, being located on chromosome 3 between markers G249 and RG418.	 Reproductive organ - Heading date								
5242	qHD-8-2(t) (QHd8)	qHD-8-2(t) (QHd8)	heading date (QTL)-8-2(t)	heading date (QTL)-8-2(t)			8	This QTL controls heading date, being located on chromosome 8 between markers RZ323 and C225.	 Reproductive organ - Heading date								
5243	qHD-11-3(t) (QHd11)	qHD-11-3(t) (QHd11)	heading date (QTL)-11-3(t)	heading date (QTL)-11-3(t)			11	This QTL controls heading date, being located on chromosome 11 between markers RZ53 and RZ781,	 Reproductive organ - Heading date								
5244	qHD-12-2(t) (QHd12)	qHD-12-2(t) (QHd12)	heading date (QTL)-12-2(t)	heading date (QTL)-12-2(t)			12	This QTL controls heading date, being located on chromosome12 between markers G402 and RG20q.	 Reproductive organ - Heading date								
5245	qPH-1-7(t) (QPh1a)	qPH-1-7(t) (QPh1a)	plant height (QTL)-1-7(t)	plant height (QTL)-1-7(t)			1	This QTL controls plant height, being located on chromosome 1 between markers RZ14 and C944b.	 Character as QTL - Plant growth activity								
5246	qPH-1-8(t) (QPh1b)	qPH-1-8(t) (QPh1b)	plant height (QTL)-1-8(t)	plant height (QTL)-1-8(t)			1	This QL controls plant height, being located on chromosome 1 between markers RZ776 and CDO348.	 Character as QTL - Plant growth activity								
5247	qPH-2-2(t) (QPh2)	qPH-2-2(t) (QPh2)	plant height (QTL)-2-2(t)	plant height (QTL)-2-2(t)			2	This QTL controls plant height, being located on chromosome 2 between markers RG520 and RZ446b.	 Character as QTL - Plant growth activity								
5248	qPH-3-7(t) (QPh3b)	qPH-3-7(t) (QPh3b)	plant height (QTL)-3-7(t)	plant height (QTL)-3-7(t)			3	This QTL controls plant height, being located on chromosome 3 between markers RZ284 and RZ403b.	 Character as QTL - Plant growth activity								
5249	qPH-6-4(t) (QPh6)	qPH-6-4(t) (QPh6)	plant height (QTL)-6-4(t)	plant height (QTL)-6-4(t)			6	This QTL controls plant height, being located on chromosome 6 between markers RZ682 and C236.	 Character as QTL - Plant growth activity								
5250	qPH-8-3(t) (QPh8)	qPH-8-3(t) (QPh8)	plant height (QTL)-8-3(t)	plant height (QTL)-8-3(t)			8	This QTL controls plant height, being located on chromosome 8 between markers G104 and G2140.	 Character as QTL - Plant growth activity								
5251	qPH-12-2(t) (QPh12)	qPH-12-2(t) (QPh12)	plant height (QTL)-12-2(t)	plant height (QTL)-12-2(t)			12	This QTL controls plant height, being located on chromosome 12 between markers G402 and RG20q.	 Character as QTL - Plant growth activity								
5252	qFLL-1-1(t) (QFll1a)	qFLL-1-1(t) (QFll1a)	flag leaf length (QTL)-1-1(t)	flag leaf length (QTL)-1-1(t)			1	This QTL controls flag leaf length, being located on chromosome 1 between markers RG957 and RG462.	 Character as QTL - Plant growth activity								
5253	qFLL-1-2(t) (QFll1b)	qFLL-1-2(t) (QFll1b)	flag leaf length (QTL)-1-2(t)	flag leaf length (QTL)-1-2(t)			1	This QTL controls flag leaf length, being located on chromosome 1 between markers RZ288 and C131.	 Character as QTL - Plant growth activity								
5254	qFLL-4-1(t) (QFll4)	qFLL-4-1(t) (QFll4)	flag leaf length (QTL)-4-1(t)	flag leaf length (QTL)-4-1(t)			4	This QTL controls flag leaf length, being located on chromosome 4 between markers Ph (phenol reaction) and G379.	 Character as QTL - Plant growth activity								
5255	qFLL-5-1(t) (QFll5)	qFLL-5-1(t) (QFll5)	flag leaf length (QTL)-5-1(t)	flag leaf length (QTL)-5-1(t)			5	This QTL controls flag leaf length, being located on chromosome 5 between markers RG556 and gl1.	 Character as QTL - Plant growth activity								
5256	qFLL-2-2(t) (QFll2)	qFLL-2-2(t) (QFll2)	flag leaf length (QTL)-2-2(t)	flag leaf length (QTL)-2-2(t)			2	This QTL controls flag leaf length, being located on chromosome 2 between markers RG256 and RZ260a.	 Character as QTL - Plant growth activity								
5257	qFLW-2-1(t) (QFlw2)	qFLW-2-1(t) (QFlw2)	flag leaf width (QTL)-2-1(t)	flag leaf width (QTL)-2-1(t)			2	This QTL controls flag leaf width, being located on chromosome 2 between markers C624x and G45.	 Character as QTL - Plant growth activity								
5258	qFLW-3-1(t) (QFlw3)	qFLW-3-1(t) (QFlw3)	flag leaf width (QTL)-3-1(t)	flag leaf width (QTL)-3-1(t)			3	This QTL controls flag leaf width, being located on chromosome 3 between markers RZ474 and C746.	 Character as QTL - Plant growth activity								
5259	qFLW-6-2(t) (QFlw6)	qFLW-6-2(t) (QFlw6)	flag leaf width (QTL)-6-2(t)	flag leaf width (QTL)-6-2(t)			6	This QTL controls flag leaf width, being located on chromosome 6 between markers G200a and RZ667.	 Character as QTL - Plant growth activity								
5260	qFLW-8-2 (QFw8a)	qFLW-8-2 (QFw8a)	flag leaf width (QTL)-8-2(t)	flag leaf width (QTL)-8-2(t)			8	This QTL controls flag leaf width, being located on chromosome 8 between markers G2140 and RZ323a.	 Character as QTL - Plant growth activity								
5261	qFLW-8-3(t) (QFlw8b)	qFLW-8-3(t) (QFlw8b)	flag leaf width (QTL)-6-3(t)	flag leaf width (QTL)-6-3(t)			8	This QTL controls flag leaf width, being located on chromosome 8 between markers L457a and C1073a.	 Character as QTL - Plant growth activity								
5262	qPL-1-4(t) (QPl1a)	qPL-1-4(t) (QPl1a)	panicle length (QTL)-1-4(t)	panicle length (QTL)-1-4(t)			1	This QTL controls panicle length, being located on chromosome 1 between markers RZ14 and C944b.	 Character as QTL - Plant growth activity								
5263	qPL-1-5(t) (QPl1b)	qPL-1-5(t) (QPl1b)	panicle length (QTL)-1-5(t)	panicle length (QTL)-1-5(t)			1	This QTL controls panicle length, being located on chromosome 1 between markers RG140 and RZ288.	 Character as QTL - Plant growth activity								
5264	qPL-2-3(t) (QPl2)	qPL-2-3(t) (QPl2)	panicle length (QTL)-2-3(t)	panicle length (QTL)-2-3(t)			2	This QTL controls panicle length, being located on chromosome 2 between markers G45 and RZ386a.	 Character as QTL - Plant growth activity								
5265	qPL-5-1(t) (QPl5)	qPL-5-1(t) (QPl5)	panicle length (QTL)-5-1(t)	panicle length (QTL)-5-1(t)			5	This QTL controls panicle length, being located on chromosome 5 between markers RG556 and gl1.	 Character as QTL - Plant growth activity								
5266	qPL-6-2(t) (QPl6)	qPL-6-2(t) (QPl6)	panicle length (QTL)-6-2(t)	panicle length (QTL)-6-2(t)			6	This QTL controls panicle length, being located on chromosome 6 between markers RZ762 and C76.	 Character as QTL - Plant growth activity								
5267	qPL-7-2(t) (QPl7)	qPL-7-2(t) (QPl7)	panicle length (QTL)-7-2(t)	panicle length (QTL)-7-2(t)			7	This QTL controls panicle length, being located on chromosome 7 between markers RG678 and G20.	 Character as QTL - Plant growth activity								
5268	qPL-8-2(t) (QPl8)	qPL-8-2(t) (QPl8)	panicle length (QTL)-8-2(t)	panicle length (QTL)-8-2(t)			8	This QTL controls panicle length, being located on chromosome 8 between markers C424b and RZ143.	 Character as QTL - Plant growth activity								
5269	qSN-1-2(t) (QSn1)	qSN-1-2(t) (QSn1)	spikelet number per panicle (QTL)-1-2(t)	spikelet number per panicle (QTL)-1-2(t)			1	This QTL controls spikelet number per panicle, being located on chromosome 1 between markers RZ801 and RZ14.	 Character as QTL - Yield and productivity								
5270	qSN-4-1(t) (QSn4)	qSN-4-1(t) (QSn4)	spikelet number per panicle (QTL)-4-1(t)	spikelet number per panicle (QTL)-4-1(t)			4	This QTl controls spikelet number per panicle, being located on chromosome 4 between markers Ph (phenol staining) and G379.	 Character as QTL - Yield and productivity								
5271	qSN-6-2(t) (QSn6)	qSN-6-2(t) (QSn6)	spikelet number per panicle (QTL)-6-2(t)	spikelet number per panicle (QTL)-6-2(t)			6	This QTL controls spikelet number per panicle, being located on chromosome 6 between markers C235a and G294d.	 Character as QTL - Yield and productivity								
5272	qSN-9-1(t) (QSn9a)	qSN-9-1(t) (QSn9a)	spikelet number per panicle (QTL)-9-1(t)	spikelet number per panicle (QTL)-9-1(t)			9	This QTl controls spikelet number per panicle, being located on chromosome 9 between markers G103b and RZ698.	 Character as QTL - Yield and productivity								
5273	qSN-9-2(t) (QSn9b)	qSN-9-2(t) (QSn9b)	spikelet number per panicle (QTL)-9-2(t)	spikelet number per panicle (QTL)-9-2(t)			9	This QTL controls spikelet number per panicle, being located on chromosome 9 between markers RG451 and RZ404.	 Character as QTL - Yield and productivity								
5274	qSF-2-1(t) (QSf2)	qSF-2-1(t) (QSf2)	spikelet fertility (QTL)-2-1(t)	spikelet fertility (QTL)-2-1(t)			2	This QTL controls spikelet fertility, being located on chromosome 2 between markers CDO718 and RG437.	 Character as QTL - Yield and productivity								
5275	qSF-6-2(t) (QSf6)	qSF-6-2(t) (QSf6)	spikelet fertility (QTL)-6-2(t)	spikelet fertility (QTL)-6-2(t)			6	This QTL controls spikelet fertility, being located on chromosome 6 between markers G294a and G1468b.	 Character as QTL - Yield and productivity								
5276	qSF-7-2(t) (QSf7)	qSF-7-2(t) (QSf7)	spikelet fertility (QTL)-7-2(t)	spikelet fertility (QTL)-7-2(t)			7	This QTL controls spikelet fertility, being located on chromosome 7 between markers CDO497 and BCD855.	 Character as QTL - Yield and productivity								
5277	qSF-12-1(t) (QSf12)	qSF-12-1(t) (QSf12)	spikelet fertility (QTL)-12-1(t)	spikelet fertility (QTL)-12-1(t)			12	This QTL controls spikelet fertility, being located on chromosome 12 between markers RG20q and RG91q.	 Character as QTL - Yield and productivity								
5278	qSD-4-1(t) (qSD4)	qSD-4-1(t) (qSD4)	seed dormancy (QTL)-4-1(t)	seed dormancy (QTL)-4-1(t)			4	This QTL controls seed dormancy, being located on chromosome 4 in the vicinity of marker RM252.	 Seed - Physiological traits - Dormancy								
5279	qSD-7-2(t) (qSD7-1)	qSD-7-2(t) (qSD7-1)	seed dormancy (QTL)-7-2(t)	seed dormancy (QTL)-7-2(t)			7	This QTL controls seed dormancy, being located on chromosome 7 in the vicinity of marker RM180.	 Seed - Physiological traits - Dormancy								
5280	qSD-7-3(t) (qSD7-2)	qSD-7-3(t) (qSD7-2)	seed dormancy (QTL)-7-3(t)	seed dormancy (QTL)-7-3(t)			7	This QTL controls seed dormancy, being located on chromosome 7 in the vicinity of marker RM346.	 Seed - Physiological traits - Dormancy								
5281	qSD-8-1(t) (qSD8)	qSD-8-1(t) (qSD8)	seed dormancy (QTL)-8-1(t)	seed dormancy (QTL)-8-1(t)			8	This QTL controls seed dormancy, being located on chromosome 8 in the vicinity of marker RM531.	 Seed - Physiological traits - Dormancy								
5282	qSD-12-1(t) (qSD12)	qSD-12-1(t) (qSD12)	seed dormancy (QTL)-12-1(t)	seed dormancy (QTL)-12-1(t)			12	This QTL controls seed dormancy, being located on chromosome 12 in the vicinity of marker RM270.	 Seed - Physiological traits - Dormancy								
5283	qSH-3-4(t) (qSH3)	qSH-3-4(t) (qSH3)	shattering (QTL)-3-4(t)	shattering (QTL)-3-4(t)			3	This QTL controls seed shattering, being located on chromosome 3 in the vicinity of marker RM486.	 Seed - Physiological traits - Shattering								
5284	qSH-4-4(t) (qSH4)	qSH-4-4(t) (qSH4)	shattering (QTL)-4-4(t)	shattering (QTL)-4-4(t)			4	This QTL controls seed shattering, being located on chromosome 4 in the vicinity of marker RM471.	 Seed - Physiological traits - Shattering								
5285	qSH-7-2(t) (qSD7)	qSH-7-2(t) (qSD7)	shattering (QTL)-7-2(t)	shattering (QTL)-7-2(t)			7	This QTL controls seed shattering, being located on chromosome 7 in the vicinity of marker RM118.	 Seed - Physiological traits - Shattering								
5286	qSH-8-3(t) (qSH8)	qSH-8-3(t) (qSH8)	shattering (QTL)-8-3(t)	shattering (QTL)-8-3(t)			8	This QTL controls seed shattering, being located on chromosome 8 in the vicinity of marker RM135B.	 Seed - Physiological traits - Shattering								
5287	qAL-4-1(t) (qAL4-1)	qAL-4-1(t) (qAL4-1)	awn length (QTL)-4-1(t)	awn length (QTL)-4-1(t)			4	This QTL controls awn length, being located on chromosome 4 in the vicinity of marker RM471.	 Character as QTL - Plant growth activity								
5288	qAL-4-2(t) (qAL4-2)	qAL-4-2(t) (qAL4-2)	awn length (QTL)-4-2(t)	awn length (QTL)-4-2(t)			4	This QTL controls awn length, being located on chromosome 4 in the vicinity of marker RM252.	 Character as QTL - Plant growth activity								
5289	qAL-8-1(t) (qAL8)	qAL-8-1(t) (qAL8)	awn length (QTL)-8-1(t)	awn length (QTL)-8-1(t)			8	This QTL controls awn length, being located on chromosome 8 in the vicinity of marker RM531.	 Character as QTL - Plant growth activity								
5290	qHCB-4-1(t) (qHCB4)	qHCB-4-1(t) (qHCB4)	black hull (QTL)-4-1(t)	black hull (QTL)-4-1(t)			4	This QTL controls black pigmentaion on hull, being located on chromosome 4 in vicinity of marker RM564A.	 Coloration								
5291	qHCB-7-1(t) (qHCB7)	qHCB-7-1(t) (qHCB7)	black hull (QTL)-7-1(t)	black hull (QTL)-7-1(t)			7	This QTL controls black pigmentation of hull, being located on chromosome 7 in the vicinity of marker RM118.	 Coloration								
5292	qHCR-4-1(t) (qHCR4)	qHCR-4-1(t) (qHCR4)	red hull (QTL)-4-1(t)	red hull (QTL)-4-1(t)			4	This QTl controls red pigmentation of hull, being located on chromosome 4 in the vicinity of marker RM564A.	 Coloration								
5293	qHCR-7-1(t) (qHCR7)	qHCR-7-1(t) (qHCR7)	red hull (QTL)-7-1(t)	red hull (QTL)-7-1(t)			7	This QTL controls red pigmentation of hull, being located on chromosome 7 in the vicinity of marker RM118.	 Coloration								
5294	qHCY-4-1(t) (qHCY4)	qHCY-4-1(t) (qHCY4)	yellow hull (QTL)-4-1(t)	yellow hull (QTL)-4-1(t)			4	This QTL controls yellow pigmentation of hull, being located on chromosome 4 in the vicinity of marker RM564A.	 Coloration								
5295	qPCB-7-1(t) (qPCB7)	qPCB-7-1(t) (qPCB7)	black pericarp (QTL)-7-1(t)	black pericarp (QTL)-7-1(t)			7	This QTL controls black pigmentation of pericarp, being located on chromosome 7 in the vicinity of marker RM5672.	 Coloration								
5296	qPCR-7-1(t) (qPPCR7)	qPCR-7-1(t) (qPPCR7)	red pericarp (QTL)-7-1(t)	red pericarp (QTL)-7-1(t)			7	This QTL controls red pigmentation of pericarp, being located on chromosome 7 in the vicinity of marker RM5672.	 Coloration								
5297	qPCY-7-1(t) (qPCY7)	qPCY-7-1(t) (qPCY7)	yellow pericarp (QTL)-7-1(t)	yellow pericarp (QTL)-7-1(t)			7	This QTL controls yellow pigmentation of pericarp, being located on chromosome 7 in the vicinity of marker RM5672.	 Coloration								
5298	qCCFJ-4-1(t) (qCCFJ-4)	qCCFJ-4-1(t) (qCCFJ-4)	chlorophyll content at flowering (QTL)-4-1(t)	chlorophyll content at flowering (QTL)-4-1(t)			4	This QTL controls chlorophyll content at flowering , being located on chromosome 4 between markers RM119 and RM142.	 Character as QTL - Plant growth activity								
5299	qCCFJ-9-1(t)	qCCFJ-9-1(t)	chlorophyll content at flowering (QTL)-9-1(t)	chlorophyll content at flowering (QTL)-9-1(t)			9	This QTL controls chlorophyll content at flowering, being located on chromosome 9 between markers RM201 and RM108.	 Character as QTL - Plant growth activity								
5300	qCCFJ-9-2(t)	qCCFJ-9-2(t)	chlorophyll content at flowering (QTL)-9-2(t)	chlorophyll content at flowering (QTL)-9-2(t)			9	This QTL controls chlorophyll content at flowering, being located on chromosome 9 between markers RM215 and RM201.	 Character as QTL - Plant growth activity								
5301	qCCAI-9-1(t) (qCCAI-9)	qCCAI-9-1(t) (qCCAI-9)	chlorophyll content at 25 DAF (QTL)-9-1(t)	chlorophyll content at 25 DAF (QTL)-9-1(t)			9	This QTL controls chlorophyll content at 25 days after flowering, being located on chromosome 9 between markers RM242 and RM6543.	 Character as QTL - Plant growth activity								
5302	qCCAJ-9-1(t) (qCCAJ-9)	qCCAJ-9-1(t) (qCCAJ-9)	chlorophyll content at 25 DAF (QTL)-9-1(t)	chlorophyll content at 25 DAF (QTL)-9-1(t)			9	This QTL controls chlorophyll content at 25 days after flowering, being located on chromosome 9 between markers RM108 and RM242.	 Character as QTL - Plant growth activity								
5303	qRCRJ-6-1(t) (qRCRJ-6)	qRCRJ-6-1(t) (qRCRJ-6)	reduction of chorophyll content (QTL)-6-1(t)	reduction of chorophyll content (QTL)-6-1(t)			6	This QTL controls the reduction of chlorophyll content at 25 days after flowering from that at flowering, being located on chromosome 6 between markers RM253 and RM217.	 Character as QTL - Plant growth activity								
5304	qLDPJ-6-1(t) (qLDPJ-6)	qLDPJ-6-1(t) (qLDPJ-6)	late-discoloring leaf no. per panicle (QTL)-61(t)	late-discoloring leaf no. per panicle (QTL)-61(t)			6	This QTL controls late-discoloring leaf number per panicle, being located on chromosome 6 between markers RM402 and RM253.	 Character as QTL - Plant growth activity								
5305	qLDLJ-6-1(t)	qLDLJ-6-1(t)	late-discoloring leaf no. per plant (QTL)-6-1(t)	late-discoloring leaf no. per plant (QTL)-6-1(t)			6	this QTL controls late-discoloring leaf number per plant, being located on chromosome 6 between markers RM402 and RM253.	 Character as QTL - Plant growth activity								
5306	qLDLJ-6-2(t)	qLDLJ-6-2(t)	late-discoloring leaf no. per plant (QTL)-6-2(t)	late-discoloring leaf no. per plant (QTL)-6-2(t)			6	This QTL controls late-discoloring leaf number per plant, being located on chromosome 6 between markers RM136 and RM549.	 Character as QTL - Plant growth activity								
5307	qLDLI-6-3(t)	qLDLI-6-3(t)	late-discoloring leaf no. per plant (QTL)-6-3(t)	late-discoloring leaf no. per plant (QTL)-6-3(t)			6	This QTL controls late-discoloring leaf number per plant, being located on chromosome 6 between markers RM3 and RM136.	 Character as QTL - Plant growth activity								
5308	qLDLI-2-1(t) (qLDLI-2)	qLDLI-2-1(t) (qLDLI-2)	late-discoloring leaf no. per plant (QTL)-2-1(t)	late-discoloring leaf no. per plant (QTL)-2-1(t)			2	This QTL controls late-discoloring leaf number per plant, being located on chromosome 2 between markers RM341 and RM145.	 Character as QTL - Plant growth activity								
5309	qBRT-12-2(t) (brt12a)	qBRT-12-2(t) (brt12a)	basal root thickness (QTL)-12-2(t)	basal root thickness (QTL)-12-2(t)			12	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 12 between markers RM101 and RM260.	 Vegetative organ - Root								
5310	qBRT-12-3(t) (brt12b)	qBRT-12-3(t) (brt12b)	basal root thickness (QTL)-12-3(t)	basal root thickness (QTL)-12-3(t)			12	This QTL controls basal root thickness in relation to drought tolernce, being locate on chromosome 12 between markers RM270 and RM235.	 Vegetative organ - Root								
6000	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S	BLAST- AND WOUND- INDUCIBLE MAPK GENE 1	blast- and wound- inducible MAPK gene-1, Blast- and wound-induced MAP kinase 1, Mitogen-activated protein kinase 12, MAP kinase 12, MAP kinase 1, MAP kinase 17	BLAST- AND WOUND-INDUCED MAP KINASE 1		6	EC=2.7.11.24 Q5Z9J0. AF177392. AF194415. FJ628390 (promoter), FJ628391 (5'UTR, splice variant partial cds). KC609087-KC609096 (O. sativa and wild rice species, partial cds). OsMPK12 in Nanda et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os06g0708000	LOC_Os06g49430.2, LOC_Os06g49430.1				GO:0009751 - response to salicylic acid stimulus, GO:0009814 - defense response, incompatible interaction, GO:0006468 - protein amino acid phosphorylation, GO:0006952 - defense response, GO:0004707 - MAP kinase activity, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0000165 - MAPKKK cascade, GO:0005886 - plasma membrane, GO:0009738 - abscisic acid mediated signaling, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus, GO:0009723 - response to ethylene stimulus	TO:0000112 - disease resistance, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000173 - ethylene sensitivity	
6001	CSLF	Csl, OsCslF	CELLULOSE SYNTHASE-LIKE F	cellulose synthase-like gene	CELLULOSE SYNTHASE-LIKE PROTEIN F				 Biochemical character						GO:0016759 - cellulose synthase activity		
6002	FLO4	FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD	FLOURY ENDOSPERM 4	"floury endosperm4, floury endosperm 4, pyruvate orthophospate dikinase, \"Pyruvate, phosphate dikinase 1, chloroplastic\", \"Pyruvate, orthophosphate dikinase 1\", pyruvate orthophosphate dikinase, pyruvate orthophosphate dikinase B, cytosolic pyruvate orthophosphate dikinase, orthophosphate dikinase, Pyruvate phosphate dikinase"	PYRUVATE, ORTHOPHOSPHATE DIKINASE 1	flo4	5	EC=2.7.9.1 Q6AVA8. AY427567 (promoter). AJ004966. PO:0020104; leaf sheath ; PO:0020039; leaf lamina ; PO:0020110; scutellum ; PO:0009005; root ; PO:0005360; aleurone layer ; PO:0009089; endosperm. GRO:0007172; embryo stage EM6 ; GRO:0007175; embryo stage EM8 ; GRO:0007042; 08-dough stage ; GRO:0007174; embryo stage EM7 ; GRO:0007045; 09-mature grain stage. LOC_Os05g33570.	 Biochemical character,  Vegetative organ - Leaf,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os05g0405000	LOC_Os05g33570.2, LOC_Os05g33570.1	GR:0101188			GO:0010150 - leaf senescence, GO:0016310 - phosphorylation, GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0019252 - starch biosynthetic process, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0000287 - magnesium ion binding, GO:0009416 - response to light stimulus, GO:0050242 - pyruvate, phosphate dikinase activity, GO:0009507 - chloroplast, GO:0015979 - photosynthesis, GO:0009536 - plastid, GO:0016301 - kinase activity, GO:0009651 - response to salt stress, GO:0008610 - lipid biosynthetic process, GO:0006529 - asparagine biosynthetic process, GO:0016740 - transferase activity	TO:0000249 - leaf senescence, TO:0000075 - light sensitivity, TO:0000104 - floury endosperm, TO:0006001 - salt tolerance	PO:0005360 - aleurone layer , PO:0009005 - root , PO:0009089 - endosperm , PO:0020039 - leaf lamina , PO:0001054 - 4 leaf senescence stage , PO:0020104 - leaf sheath , PO:0020110 - scutellum , PO:0007022 - seed imbibition stage 
6003	ABA	ABA	ABSCISIC ACID ACCUMULATION	abscisic acid accumulation					 Tolerance and resistance - Stress tolerance								
6004	AID1	aid1, OsAID1	ANTHER INDEHISCENCE 1	anther indehiscence-1, Anther Indehiscence1			6	PO:0006449; stomium (sensu Poaceae) ; PO:0006446; endothecium (sensu Poaceae) ; PO:0009025; leaf ; PO:0000030; septum. GRO:0007230; stamen stage ST6-5.	 Reproductive organ - Pollination, fertilization, fertility - Sterility	Os06g0181300	LOC_Os06g08290.1	GR:0800010			GO:0003700 - transcription factor activity, GO:0045449 - regulation of transcription, GO:0009901 - anther dehiscence, GO:0043067 - regulation of programmed cell death, GO:0010152 - pollen maturation, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000245 - pollen free, TO:0000436 - spikelet sterility, TO:0000346 - tiller number, TO:0000437 - male sterility, TO:0000053 - pollen sterility, TO:0000137 - days to heading	PO:0000030 - septum , PO:0020002 - anther wall endothecium , PO:0020101 - stomium , PO:0009025 - vascular leaf 
6005	ALAAT	alaAT, ALT-1, OsAlaAT1, AlaAT1	ALANINE AMINOTRANSFERASE	alanine aminotransferase, Alanine transaminase 1, alanine-aminotransferase1	ALANINE AMINOTRANSFERASE	osalaat1	10	AB007404, AB007405. AY427564 (promoter). LOC_Os10g25130.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os10g0390500	LOC_Os10g25130.1				GO:0008483 - transaminase activity, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0001666 - response to hypoxia, GO:0009058 - biosynthetic process, GO:0009507 - chloroplast, GO:0019481 - L-alanine catabolic process, by transamination, GO:0030170 - pyridoxal phosphate binding, GO:0046686 - response to cadmium ion, GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity, GO:0010581 - regulation of starch biosynthetic process, GO:0005829 - cytosol	TO:0000696 - starch content, TO:0000104 - floury endosperm, TO:0000196 - amylose content	PO:0004506 - developing seed stage 
6006	ALDH2A	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5	ALDEHYDE DEHYDROGENASE 2A	aldehyde dehydrogenase 2a, Aldehyde dehydrogenase 2B5	ALDEHYDE DEHYDROGENASE 2A		2	LOC_Os02g49720. AB030939. a mature anther-preferentially expressed gene. mitochondrial ALDH2. GO:0071454: cellular response to anoxia. Rice ALDH2a and ALDH2b genes are orthologues of maize mitochondrial ALDH genes, rf2b and rf2a, respectively (Tsuji et al. 2003). OsALDH2B5 in Simeon et al. 2010.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0730000	LOC_Os02g49720.7, LOC_Os02g49720.6, LOC_Os02g49720.3, LOC_Os02g49720.2, LOC_Os02g49720.1				GO:0009635 - response to herbicide, GO:0009629 - response to gravity, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0009413 - response to flooding, GO:0009415 - response to water, GO:0005739 - mitochondrion, GO:0030912 - response to deep water, GO:0009751 - response to salicylic acid stimulus	TO:0000058 - herbicide sensitivity, TO:0002693 - gravity response trait, TO:0000286 - submergence sensitivity	PO:0009066 - anther 
6010	ANACB14	AnacB14	ANACONDA B14	transposon:AnacB14, transposon AnacB14			10	Anaconda, Anaconda element, Anac. The Anaconda elements belong to the Mu superfamily. Database analyses revealed that the loci of 26 of the 27 Anaconda elements in the subspecies japonica are the same as those in the subspecies indica. AB108421.	 Other						GO:0032196 - transposition		
6012	BAR	bar	BIALAPHOS RESISTANCE	bialaphos resistance				glufosinate-resistant rice. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0061472			GO:0009635 - response to herbicide	TO:0000058 - herbicide sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
6013	BLM	blm (=bl2)	BLAST LESION MIMIC GENE	blast lesion mimic gene		blm			 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0052319 - regulation of phytoalexin biosynthetic process, GO:0009266 - response to temperature stimulus, GO:0010941 - regulation of cell death, GO:0042542 - response to hydrogen peroxide, GO:0048571 - long-day photoperiodism, GO:0050832 - defense response to fungus, GO:0006952 - defense response	TO:0000063 - mimic response, TO:0002670 - momilactone A content, TO:0000432 - temperature response trait, TO:0000074 - blast disease	PO:0025034 - leaf 
6014	BPH17	Bph17	BROWN PLANTHOPPER RESISTANCE 17	brown planthopper resistance  17			4	this BPH resistance gene was located between two SSR markers RM8213 and RM5953 on the short arm of chromosome 4, with map distances of 3.6 cM and 3.2 cM, respectively.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
6015	BPH18	Bph18(t)	BROWN PLANTHOPPER RESISTANCE 18	brown planthopper resistance 18			12	LOC_Os12g37290.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
6016	BPH19	bph19(t)	BROWN PLANTHOPPER RESISTANCE 19	brown planthopper resistance 19			3		 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
6017	BRD2	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1	BRASSINOSTEROID DEFICIENT DWARF 2	brassinosteroid (BR)-deficient dwarf-2, BR-deficient dwarf2, brassinosteroid-deficient dwarf2, rice homolog of Arabidopsis thaliana DIMINUTO/DWARF1, Dim/dwf1 protein, DIMINUTO, DWARF1, Putative Cell elongation protein DIMINUTO, Cell elongation protein Dwarf1, Dimunito/Dwarf1, longer top branch and shorter grain 1	DIM/DWF1 PROTEIN	ltbsg1	10	LOC_Os10g25780. CA757254, AU030326, AAM01136. OSJNBb0058B20.18. TO:0000740: branch morphology trait. TO:0000929: fruit growth and development trait. TO:0000854: spikelet floret size.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os10g0397400	LOC_Os10g25780.3, LOC_Os10g25780.2, LOC_Os10g25780.1				GO:0009664 - plant-type cell wall organization, GO:0000271 - polysaccharide biosynthetic process, GO:0000272 - polysaccharide catabolic process, GO:0010075 - regulation of meristem growth, GO:0048767 - root hair elongation, GO:0009834 - secondary cell wall biogenesis, GO:0005982 - starch metabolic process, GO:0050614 - delta24-sterol reductase activity, GO:0016126 - sterol biosynthetic process, GO:0050660 - FAD binding, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0006084 - acetyl-CoA metabolic process, GO:0005886 - plasma membrane, GO:0048653 - anther development, GO:0016132 - brassinosteroid biosynthetic process, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0007275 - multicellular organismal development, GO:0009825 - multidimensional cell growth, GO:0009808 - lignin metabolic process, GO:0019344 - cysteine biosynthetic process, GO:0009932 - cell tip growth, GO:0009507 - chloroplast, GO:0005634 - nucleus, GO:0010154 - fruit development, GO:0010229 - inflorescence development, GO:0009826 - unidimensional cell growth	TO:0000734 - grain length, TO:0000357 - growth and development trait, TO:0000397 - grain size, TO:0002676 - brassinosteroid content, TO:0000621 - inflorescence development trait, TO:0000382 - 1000-seed weight, TO:0000180 - spikelet fertility, TO:0002688 - leaf lamina joint bending, TO:0000207 - plant height	PO:0001002 - fruit development stage , PO:0001083 - inflorescence development stage 
6019	CDC2-1	cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1	CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1	Cell division control protein 2 homolog 1, Cyclin-dependent kinase A-1	CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1		3	LOC_Os03g02680. P29618. X60374. CELL DIVISION CONTROL PROTEIN 2, CDC2. EC=2.7.11.22 EC=2.7.11.23 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0118400	LOC_Os03g02680.3, LOC_Os03g02680.2, LOC_Os03g02680.1				GO:0005524 - ATP binding, GO:0007126 - meiosis, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity	TO:0000350 - cms-hl type	PO:0020094 - plant egg cell 
6020	CDC2-2	cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2	CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 2	Cell division control protein 2 homolog 2, Cyclin-dependent kinase A-2	CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 2		2	LOC_Os02g03060. P29619. X60375. CELL DIVISION CONTROL PROTEIN 2, CDC2. EC=2.7.11.22 EC=2.7.11.23 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0123100	LOC_Os02g03060.2, LOC_Os02g03060.1				GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005524 - ATP binding, GO:0004693 - cyclin-dependent protein kinase activity	TO:0000350 - cms-hl type	PO:0020094 - plant egg cell 
6025	CPT1	cpt1	COLEOPTILE PHOTOTROPISM 1	coleoptile phototropism1, Coleoptile phototropism protein 1, Non-phototropic hypocotyl 3-like protein, NPH3-like protein, NPH3-like	COLEOPTILE PHOTOTROPISM PROTEIN 1		2	Os02g0568200. LOC_Os02g35970. Q5KS50. PO:0020033; coleoptile ; PO:0009005; root. GRO:0007047; 02-seedling.	 Vegetative organ - Leaf	Os02g0568200	LOC_Os02g35970.1	GR:0080030			GO:0004871 - signal transducer activity, GO:0009638 - phototropism, GO:0005515 - protein binding, GO:0009416 - response to light stimulus	TO:0000159 - blue light sensitivity, TO:0000075 - light sensitivity, TO:0002651 - shoot phototropism, TO:0002652 - root phototropism, TO:0002650 - phototropism, TO:0000158 - red light sensitivity	PO:0009005 - root , PO:0020033 - coleoptile 
6026	CYCA1;3	cycA1;3, CycA1;3, CYCA1-3	CYCLIN-A1-3	Cyclin-A1-3, G2/mitotic-specific cyclin-A1-3	CYCLIN-A1-3 		12	mitotic cyclins. Q0INT0.	 Biochemical character	Os12g0298950	LOC_Os12g20324.3, LOC_Os12g20324.2, LOC_Os12g20324.1				GO:0005737 - cytoplasm, GO:0051445 - regulation of meiotic cell cycle, GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0007140 - male meiosis, GO:0007135 - meiosis II, GO:0009556 - microsporogenesis, GO:0005634 - nucleus, GO:0000239 - pachytene, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
6027	CYCB2;1	cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1	CYCLIN-B2-1	Cyclin-B2-1, G2/mitotic-specific cyclin-B2-1, B-type cyclin 2;1	CYCLIN-B2-1 		4	mitotic cyclins. AB024987. X82035. S49462. Q01J96(indica), Q7XSJ6(japonica).	 Biochemical character	Os04g0563700	LOC_Os04g47580.1				GO:0051301 - cell division, GO:0005634 - nucleus, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007067 - mitosis		
6028	CYCB2;2	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2	CYCLIN-B2-2	Cyclin-B2-2, G2/mitotic-specific cyclin-B2-2, B-type cyclin 2;2	CYCLIN-B2-2 		6	mitotic cyclins. X82036. A2YH60(indica), Q0D9C7(japonica).	 Biochemical character	Os06g0726800	LOC_Os06g51110.2, LOC_Os06g51110.1				GO:0005634 - nucleus, GO:0007067 - mitosis, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
6031	DBS1	dbs1	DWARFBAMBOO SHOOT 1	dwarf bamboo shoot 1			1	DBS1 encodes a NACK-type kinesin-like protein.The recessive mutant, dbs1, shows severe dwarfism and bamboo-like shoot.MNU induced mutant from Taichung 65	 Seed - Morphological traits - Embryo						GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis		
6032	DGL1	dgl1, dgl1-1, dgl1-2, dgl1-3	DWARF AND GLADIUS LEAF 1	dwarf and gladius leaf-1					 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6033	EF5	ef5, ef5*	EARLINESS 5	late heading5			6	Late heading. lateness gene. PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0061443			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading	PO:0009049 - inflorescence 
6035	ELD1	eld1-1, KOB1	ELONGATION DEFECTIVE 1	elongation defictive 1-1, elongation defective1, KOBITO1		eld1-1, eld1-2			 Biochemical character						GO:0031012 - extracellular matrix, GO:0016049 - cell growth, GO:0005618 - cell wall		
6036	ENL	enl	ENDOSPERMLESS	endospermless					 Seed - Morphological traits - Endosperm						GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development		
6040	F5	f5, f5-Du, Sb, S24	WIDE COMPATIBILITY GENES	f5 locus from Dular			5	wide compatibility genes. S24, f5-Du and Sb mapped to the same region. (2011)	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009566 - fertilization, GO:0009856 - pollination		
6042	F6	f6, f6-Du, S5, S5-08	WIDE COMPATIBILITY GENES	"f6 allele from \"Dular\", S5 allele from 02428"				wide compatibility genes.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009566 - fertilization, GO:0009856 - pollination		
6043	FSM	fsm	FLATTENED SHOOT MERISTEM	flattered shoot meristem			1	The FSM locus was confined within 12.2 cM on the long arm of chromosome 1 between two markers R1764 and S10526.	 Vegetative organ - Shoot apical meristem(SAM)						GO:0010492 - maintenance of shoot apical meristem identity		
6044	GLR3.1	OsGLR3.2, GLR3.2, OsGLR3.1	GLUTAMATE RECEPTOR 3.1	Glutamate receptor 3.1, Ligand-gated ion channel 3.1, Glutamate receptor homolog 3.2, GLUTAMATE RECEPTOR-LIKE 3.1	GLUTAMATE RECEPTOR 3.1		4	LOC_Os04g49570. GLUTAMATE RECEPTOR-LIKE GENE, glutamate receptor-like gene. Q7XP59. OsGLR3.2 in Singh et al. 2013.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os04g0585200	LOC_Os04g49570.2, LOC_Os04g49570.1				GO:0006950 - response to stress, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0030288 - outer membrane-bounded periplasmic space, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0004970 - ionotropic glutamate receptor activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006811 - ion transport	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
6045	GLUB1	GluB1, GluB1-A, GluB-1, OsGluB1	GLUTELIN B1	Glutelin type-B 1, Glutelin type-B 1 acidic chain, Glutelin type-B 1 basic chain	GLUTELIN B1		2	LOC_Os02g15169. P14323. AY427569(promoter region). X15833. X54194. X54314.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os02g0249900/Os02g0249800					GO:0045735 - nutrient reservoir activity		
6047	GN1A	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a	GRAIN NUMBER 1A	Cytokinin oxidase/dehydrogenase 2, grain number 1a, cytokinin oxidase 2, Grain number 1a/Cytokinin oxidase 2, Grain number 1 a	CYTOKININ  OXIDASE/DEHYDROGENASE 2	Gn1a-Habataki, Gn1a-5150, Gn1a-T1, Gn1a-T2, Gn1a-T3, Gn1a-type 3	1	LOC_Os01g10110. AB205193. Q4ADV8. cytokinin oxidase/dehydrogenase. increase the number of reproductive organs. a negative regulator of grain number..	 Biochemical character,  Reproductive organ - Inflorescence,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0197700 	LOC_Os01g10110.1	GR:0020051			GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0019139 - cytokinin dehydrogenase activity, GO:0032940 - secretion by cell, GO:0022900 - electron transport chain	TO:0002759 - grain number, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000207 - plant height, TO:0000467 - cell membrane stability, TO:0000152 - panicle number, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000052 - primary branching of inflorescence, TO:0000142 - secondary branching of inflorescence, TO:0000128 - harvest index, TO:0000316 - photosynthetic ability, TO:0000621 - inflorescence development trait, TO:0002660 - cytokinin content, TO:0000440 - grain number per plant, TO:0000296 - vegetative vigor, TO:0000050 - inflorescence branching, TO:0000456 - spikelet number, TO:0000590 - grain weight, TO:0000136 - relative water content, TO:0006001 - salt tolerance	PO:0000230 - inflorescence meristem , PO:0001083 - inflorescence development stage 
6048	GN1B	Gn1b	GRAIN NUMBER 1B	grain number 1b			1	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6049	GN2	Gn2	GRAIN NUMBER 2	grain number 2			4	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6050	GN3	Gn3	GRAIN NUMBER 3	grain number 3			10	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6051	GN4	Gn4	GRAIN NUMBER 4	grain number 4			12	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6052	GN5	Gn5	GRAIN NUMBER 5	grain number 5			12	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6053	GNS1	Gns1	GLUCANASE 1	glucanase-1	GLUCANASE 1				 Biochemical character						GO:0042972 - licheninase activity		
6054	GPA7	gpa7	GRAINS PER PANICLE 7	grains per panicle			7	EU444082 (Oryza rufipogon). 	 Character as QTL - Yield and productivity						GO:0048281 - inflorescence morphogenesis		
6055	GRX	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2	GLUTAREDOXIN	glutaredoxin, glutaredoxin 14	GLUTAREDOXIN		4	D86744, X77150. P55142. OsGrx9 in Esfahani and Shahpiri 2014. OsGRX14 in Garg et al. 2010. OsGrxC2;2 in Morita et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0508300	LOC_Os04g42930.2, LOC_Os04g42930.1				GO:0006810 - transport, GO:0016209 - antioxidant activity, GO:0045454 - cell redox homeostasis, GO:0006979 - response to oxidative stress, GO:0008794 - arsenate reductase (glutaredoxin) activity, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0022900 - electron transport chain, GO:0015035 - protein disulfide oxidoreductase activity	TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content	PO:0004506 - developing seed stage , PO:0009009 - plant embryo , PO:0005360 - aleurone layer 
6056	GS2	OsGS2, GLN2, RGS31	GLUTAMINE SYNTHETASE 2	"\"Glutamine synthetase, chloroplastic\", plastidic/chloroplastic glutamine synthase, glutamine synthetase 2, \"Glutamate:ammonia ligase delta, chloroplast\", chloroplastic gluthamine synthetase 2"	GLUTAMINE SYNTHETASE 2		4	LOC_Os04g56400. EC=6.3.1.2 Glutamate--ammonia ligase. P14655. X14246. D16071.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0659100	LOC_Os04g56400.4, LOC_Os04g56400.3, LOC_Os04g56400.1				GO:0010446 - response to alkalinity, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009635 - response to herbicide, GO:0004356 - glutamate-ammonia ligase activity, GO:0005524 - ATP binding, GO:0006542 - glutamine biosynthetic process, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0022626 - cytosolic ribosome, GO:0005739 - mitochondrion, GO:0009399 - nitrogen fixation, GO:0046686 - response to cadmium ion, GO:0009570 - chloroplast stroma, GO:0009651 - response to salt stress, GO:0009941 - chloroplast envelope, GO:0048046 - apoplast	TO:0000481 - alkali sensitivity, TO:0006002 - proline content, TO:0005007 - glufosinate sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
6058	HWG1	hwg1(t)	HYBRID WEAKNESS G1	hybrid weakness g1			6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen		
6059	JIOSPR10	JIOsPR10, OsPR10, PR10	JASMONATE INDUCIBLE PATHOGENESIS-RELATED CLASS 10 PROTEIN	jasmonate inducible pathogenesis-related class 10 protein	JASMONATE INDUCIBLE PATHOGENESIS-RELATED CLASS 10 PROTEIN		3	AF395880. pathogenesis-related Bet V family protein. PR10 in Rebecca et al. 2010. OsPR10 in Yamada et al. 2017,  Li et al 2017, Yang et al. 2019. 	 Tolerance and resistance - Disease resistance	Os03g0300400	LOC_Os03g18850.1				GO:0009416 - response to light stimulus, GO:0006950 - response to stress, GO:0009607 - response to biotic stimulus, GO:0009620 - response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response	TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root 
6060	KIDDO	Kiddo	TRANSPOSON MITE KIDDO	transposon MITE Kiddo, transposon:MITE Kiddo, Kiddo element, Transposable Element Kiddo, Kiddo family, Kiddo MITE family, transposable element family Kiddo				Transposal element (MITE family), transposon, MITE family, TRANSPOSON, MITE FAMILY. Thirty-five complete Kiddo sequences were identified (Kiddo-os1 - Kiddo-os35). AF484682.	 Other			GR:0061375			GO:0032196 - transposition		
6061	LD(T)	ld(t)	LACK OF LODICULE	lack of lodicule					 Reproductive organ - Spikelet, flower, glume, awn						GO:0009856 - pollination, GO:0048461 - flower structural organization		
6062	LPA1	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3	LOW PHYTIC ACID 1	Low phytic acid-1, low phytic acid 1, low PA  1		lpa1, lpa1-1, lpa1-2, lpa1-3	2	low phytic acid content. EU366951, EU366953, EU366954.	 Seed - Physiological traits - Storage substances	Os02g0819400	LOC_Os02g57400.3, LOC_Os02g57400.2, LOC_Os02g57400.1	GR:0061376			GO:0032958 - inositol phosphate biosynthetic process, GO:0006793 - phosphorus metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast, GO:0043647 - inositol phosphate metabolic process, GO:0009845 - seed germination	TO:0002666 - seed phosphorus content, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed , PO:0005360 - aleurone layer , PO:0009047 - stem , PO:0025034 - leaf , PO:0009005 - root , PO:0009067 - filament , PO:0007057 - 0 seed germination stage 
6063	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1	LOW SILICON RICE 1	low silicon rice, Low silicon rice 1, Silicon transporter LSI1, Aquaporin NIP2-1, NOD26-like intrinsic protein 2-1, Silicon transporter LSI1, Low silicon protein 1, NOD26 LIKE INTRINSIC PROTEIN 2;1, low Si uptake	AQUAPORIN NIP2-1	lsi1	2	LOC_Os02g51110. Q6Z2T3. GRO:0007140; B-reproductive stage ; GRO:0007139; A-vegetative stage. AB222272. lsi(t) (=low Si uptake) in Arimura et al. 2002. TO:0006054: arsenic concentration. Aquaporins (arsenite transport). GO:1901684: arsenate ion transmembrane transport. TO:0001048: silicon content trait. GO:0035445: borate transmembrane transport. TO:1000053: shoot system boron content.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os02g0745100	LOC_Os02g51110.1	GR:0080009,GR:0061478			GO:0080027 - response to herbivore, GO:0002213 - defense response to insect, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0015115 - silicate transmembrane transporter activity, GO:0015708 - silicate transport, GO:0016020 - membrane, GO:0048226 - Casparian strip, GO:0055085 - transmembrane transport, GO:0046685 - response to arsenic, GO:0015104 - antimonite transmembrane transporter activity, GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000201 - panicle color, TO:0000261 - insect damage resistance, TO:0000396 - grain yield, TO:0000031 - silicon sensitivity, TO:0000303 - cold tolerance	PO:0005059 - root endodermis , PO:0005772 - exodermis , PO:0020121 - lateral root , PO:0020127 - primary root 
6064	LTP1	Ltp1	LIPID TRANSFER PROTEIN 1	lipid transfer protein	LIPID TRANSFER PROTEIN 1			PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0061377			GO:0008289 - lipid binding, GO:0006952 - defense response	TO:0000074 - blast disease, TO:0000164 - stress trait	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009025 - vascular leaf 
6065	MICRON	Micron	MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT	microsatellite-targeting transposable element					 Other						GO:0032196 - transposition		
6066	_	nad9, nad9-2	_	NADH dehydrogenase subunit 9			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99370 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111: AER13002, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). nad9-2 in JN861111 and JN861112.	 Biochemical character						GO:0005739 - mitochondrion, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
6076	ONAC300	ONAC077, NAC77, NAC300, ONAC132, NAC132	NAC DOMAIN-CONTAINING PROTEIN 300	NAC domain-containing protein 30, NAC domain-containing protein 77, NAC domain-containing protein 132	NAC DOMAIN-CONTAINING PROTEIN 300		12	NAM subgroup of NAC-family genes. AB182278. Q5CD17. LOC_Os12g03050.	 Tolerance and resistance - Disease resistance,  Other	Os12g0123800	LOC_Os12g03050.1				GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0051607 - defense response to virus	TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000148 - viral disease resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000020 - black streak dwarf virus resistance	
6079	AAT	OsAAT	ASPARATE AMINOTRANSFERASE	asparate aminotransferase					 Biochemical character						GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0008483 - transaminase activity		
6080	ABA1	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP	ZEAXANTHIN EPOXIDASE 1	Zeaxanthin epoxidase 1, zeaxanthin epoxidase	ZEAXANTHIN EPOXIDASE 1	Osaba1	4	LOC_Os04g37619. AB050884. abscisic acid systhesis. PO:0009006; shoot ; PO:0009025; leaf. ABA2 in Jin et al. 2018.	 Biochemical character,  Coloration,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0448900	LOC_Os04g37619.2, LOC_Os04g37619.1	GR:0101186			GO:0051607 - defense response to virus, GO:0004497 - monooxygenase activity, GO:0008152 - metabolic process, GO:0016491 - oxidoreductase activity, GO:0022900 - electron transport chain, GO:0009651 - response to salt stress, GO:0009540 - zeaxanthin epoxidase activity, GO:0016123 - xanthophyll biosynthetic process, GO:0009536 - plastid, GO:0006725 - cellular aromatic compound metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009688 - abscisic acid biosynthetic process, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000619 - vivipary, TO:0000478 - abscisic acid concentration, TO:0000326 - leaf color, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
6084	AGAP	OsAGAP	ARF-GTPASE-ACTIVATING PROTEIN	ARF-GTPase-activating protein, adenosine diphosphate ribosylation factor-GTPase-activating protein	ARF-GTPASE-ACTIVATING PROTEIN				 Biochemical character						GO:0008060 - ARF GTPase activator activity		
6085	ALS	OsALS, AHAS	ACETOLACTATE SYNTHASE	acetolactate synthase, acetohydroxyacid synthase	ACETOLACTATE SYNTHASE	OsmALS	2	AB049822, AB049823, AY885673, AY885674, AY885675. Q6K2E8.	 Biochemical character,  Tolerance and resistance	Os02g0510200	LOC_Os02g30630.2, LOC_Os02g30630.1				GO:0000287 - magnesium ion binding, GO:0009507 - chloroplast, GO:0003984 - acetolactate synthase activity, GO:0009635 - response to herbicide, GO:0009097 - isoleucine biosynthetic process, GO:0009099 - valine biosynthetic process, GO:0030976 - thiamin pyrophosphate binding, GO:0050660 - FAD binding		
6088	APT2	OsAPT2, APRT	ADENINE PHOSPHORIBOSYL TRANSFERASE 2	adenine phosphoribosyl transferase, adenine phosphoribosyltransferase	ADENINE PHOSPHORIBOSYL TRANSFERASE 2		4	AY238894. Since this rice APRT is similar to the type 2 APRTs found in wheat and Arabidopsis, it was named OsAPT2 (Zhou et al. 2006).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0504000	LOC_Os04g42520.3, LOC_Os04g42520.2, LOC_Os04g42520.1				GO:0003999 - adenine phosphoribosyltransferase activity, GO:0006168 - adenine salvage, GO:0009116 - nucleoside metabolic process, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm	TO:0000067 - genic male sterility-thermo sensitive	
6089	ARF1	OsARF1, arf1, OsARF23, ARF23	AUXIN RESPONSE FACTOR 1	auxin response factor-1, auxin response factor 1, auxin response factor-23, auxin response factor 23	AUXIN RESPONSE FACTOR 1	osarf1, osarf23	11	AJ306306. putative transcription factor. A2ZET6(indica), Q2R3F5 (japonica). AK071997. PO:0000003; whole plant. OsARF23 in Li et al. 2014, Gan et al. 2015, Shafiq et al. 2017. LOC_Os11g32110.	 Other	Os11g0523800	LOC_Os11g32110.4, LOC_Os11g32110.3, LOC_Os11g32110.2, LOC_Os11g32110.1				GO:0046983 - protein dimerization activity, GO:0009753 - response to jasmonic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription	TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity	PO:0000003 - whole plant 
6090	BISAMT1	OsBISAMT1	BENZOTHIADIAZOLE-INDUCED SAMT1	benzothiadiazole-induced SAMT1, benzothiadiazole-induced S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase 1, BTH-induced S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase 1	BENZOTHIADIAZOLE-INDUCED SAMT1			AY524975.	 Tolerance and resistance - Stress tolerance						GO:0009863 - salicylic acid mediated signaling pathway, GO:0008168 - methyltransferase activity		
6091	BLE2	OsBLE2	BRASSINOLIDE ENHANCED GENE 2	brassinolide (BL)-enhanced gene 2, BLE2 protein	BLE2 PROTEIN 		7	AB072978.	 Tolerance and resistance - Stress tolerance	Os07g0650600	LOC_Os07g45570.1				GO:0009741 - response to brassinosteroid stimulus		
6092	BP73	BP-73, OsBP-73, Riaa1, Os-BP-73	BINDING PROTEIN 73	binding protein-73, SAP-like protein BP-73	BINDING PROTEIN 73		3	Q8L4E7. the rice homolog of A. thaliana RHON1. KC610878-KC610890 (O. sativa and wild rice species, partial cds).	 Other	Os03g0183100	LOC_Os03g08480.2, LOC_Os03g08480.1				GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0006353 - transcription termination, GO:0006754 - ATP biosynthetic process, GO:0003677 - DNA binding, GO:0040008 - regulation of growth, GO:0003715 - transcription termination factor activity		
6097	CBL1	OsCBL1, Os-CBL1	CALCINEURIN B-LIKE PROTEIN 1	Calcineurin B-like protein 1, Calcineurin B-Like protein1	CALCINEURIN B-LIKE PROTEIN 1		10	Q7XC27. DQ201195. LOC_Os10g41510.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0564800	LOC_Os10g41510.1				GO:0005773 - vacuole, GO:0005509 - calcium ion binding, GO:0031225 - anchored to membrane	TO:0000514 - potassium uptake	
6098	CBL10	OsCBL10	CALCINEURIN B-LIKE PROTEIN 10	Calcineurin B-like protein 10	CALCINEURIN B-LIKE PROTEIN 10		1	Q3HRN7. DQ201204. LOC_Os01g51420.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0711500	LOC_Os01g51420.1				GO:0009413 - response to flooding, GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000114 - flooding related trait	
6099	CBL2	OsCBL2	CALCINEURIN B-LIKE PROTEIN 2	Calcineurin B-like protein 2	CALCINEURIN B-LIKE PROTEIN 2		12	Q3HRP5. DQ201196. LOC_Os12g40510.	 Biochemical character	Os12g0597000	LOC_Os12g40510.1				GO:0005886 - plasma membrane, GO:0009705 - plant-type vacuole membrane, GO:0005773 - vacuole, GO:0005509 - calcium ion binding, GO:0032578 - aleurone grain membrane, GO:0022626 - cytosolic ribosome		
6100	CBL3	OsCBL3	CALCINEURIN B-LIKE PROTEIN 3	Calcineurin B-like protein 3	CALCINEURIN B-LIKE PROTEIN 3		3	Q75LU8. DQ201197. LOC_Os03g42840.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0626800	LOC_Os03g42840.1				GO:0022626 - cytosolic ribosome, GO:0005509 - calcium ion binding, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0009705 - plant-type vacuole membrane, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
6101	CBL4	OsCBL4, SOS3, OsSOS3	CALCINEURIN B-LIKE PROTEIN 4	Calcineurin B-like protein 4, salt overly sensitive 3	CALCINEURIN B-LIKE PROTEIN 4		5	Q75KU4. DQ201198.  LOC_Os05g45810.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0534400	LOC_Os05g45810.1				GO:0005513 - detection of calcium ion, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0031225 - anchored to membrane, GO:0005509 - calcium ion binding, GO:0042539 - hypotonic salinity response, GO:0030007 - cellular potassium ion homeostasis, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm	TO:0000303 - cold tolerance	
6102	CBL5	OsCBL5	CALCINEURIN B-LIKE PROTEIN 5	Calcineurin B-like protein 5	CALCINEURIN B-LIKE PROTEIN 5		1	Q3HRP2. DQ201199, CA759698. FJ693712. LOC_Os01g41510.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0598200	LOC_Os01g41510.1				GO:0005509 - calcium ion binding, GO:0042539 - hypotonic salinity response, GO:0016020 - membrane, GO:0005513 - detection of calcium ion, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0030007 - cellular potassium ion homeostasis		
6103	CBL6	OsCBL6	CALCINEURIN B-LIKE PROTEIN 6	Calcineurin B-like protein 6	CALCINEURIN B-LIKE PROTEIN 6		12	Q3HRP1. DQ201200, CA998498, CA766361. LOC_Os12g06510.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0162400	LOC_Os12g06510.3, LOC_Os12g06510.2, LOC_Os12g06510.1				GO:0005509 - calcium ion binding		
6104	CBL7	OsCBL7	CALCINEURIN B-LIKE PROTEIN 7	Calcineurin B-like protein 7	CALCINEURIN B-LIKE PROTEIN 7		2	Q3HRP0. DQ201201. LOC_Os02g18880.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0291000	LOC_Os02g18880.1				GO:0031225 - anchored to membrane, GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane		
6105	CBL8	OsCBL8	CALCINEURIN B-LIKE PROTEIN 8	Calcineurin B-like protein 8	CALCINEURIN B-LIKE PROTEIN 8		2	Q3HRN9. DQ201202. LOC_Os02g18930.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0291400	LOC_Os02g18930.1				GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0031225 - anchored to membrane, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
6106	CBL9	OsCBL9	CALCINEURIN B-LIKE PROTEIN 9	Calcineurin B-like protein 9	CALCINEURIN B-LIKE PROTEIN 9		1	Q3HRN8. DQ201203. LOC_Os01g39770.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0579600	LOC_Os01g39770.3, LOC_Os01g39770.2, LOC_Os01g39770.1				GO:0005509 - calcium ion binding		
6107	CC1	OsCc1, OsCc-1	CYTOCHROME C 1	cytochrome c	CYTOCHROME C 1		5	LOC_Os05g34770. AF399666. A2Y4S9(indica), Q0DI31(japonica). M63704. D10421. D15999.	 Biochemical character	Os05g0420600	LOC_Os05g34770.1				GO:0006810 - transport, GO:0005759 - mitochondrial matrix, GO:0009055 - electron carrier activity, GO:0070469 - respiratory chain, GO:0022900 - electron transport chain, GO:0020037 - heme binding		
6111	CDPK13	OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2	CALCIUM-DEPENDENT PROTEIN KINASE 13	calcium dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 13		4	AL662957, AL662987, AB042550. LOC_Os04g49510. OsCDPK7 in Li et al. 2017. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os04g0584600	LOC_Os04g49510.4, LOC_Os04g49510.3, LOC_Os04g49510.2, LOC_Os04g49510.1				GO:0019722 - calcium-mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0010857 - calcium-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010618 - aerenchyma formation, GO:0009628 - response to abiotic stimulus, GO:0009409 - response to cold	TO:0000163 - auxin sensitivity, TO:0000168 - abiotic stress trait, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000303 - cold tolerance	PO:0000258 - root cortex 
6113	CESA7	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7	CELLULOSE SYNTHASE A7	Cellulose synthase A catalytic subunit 7 [UDP-forming], Cellulose synthase A catalytic subunit 7	CELLULOSE SYNTHASE A7	cesa7	10	CELLULOSE SYNTHASE CATALYTIC SUBUNIT. Cellulose synthase catalytic subunit. EC=2.4.1.12 Q9AV71. LOC_Os10g32980. GO:1901698: response to nitrogen compound.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os10g0467800	LOC_Os10g32980.1				GO:0005515 - protein binding, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0008270 - zinc ion binding, GO:0030244 - cellulose biosynthetic process, GO:0005886 - plasma membrane, GO:0007047 - cell wall organization, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0009834 - secondary cell wall biogenesis, GO:0009642 - response to light intensity	TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0000640 - total root number	
6115	CHIA1;175	OsChia1;175, PC, Cht7, OsChia1d, Chia1d	CLASS I CHITINASE	chitinase 1;175, pistil-specific chitinase, Chitinase7, Chitinase 7, Chitinase-7, Pathogenesis related (PR)-3 chitinase 7, Class I chitinase d, Class III chitinase homologues (cDNA)-3	CLASS I CHITINASE		5	AB012855, AB018248. class I chitinase. PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q9SAY3(indica). Q7Y1Z1(japonica). 	 Biochemical character	Os05g0399700	LOC_Os05g33150.1	GR:0061297,GR:0061244			GO:0006952 - defense response, GO:0005975 - carbohydrate metabolic process, GO:0008843 - endochitinase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0051707 - response to other organism, GO:0004568 - chitinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0008061 - chitin binding, GO:0006032 - chitin catabolic process		
6116	CK1	OsCK1, CIPK31, OsCIPK31, Os-CIPK3	CIPK-LIKE PROTEIN 1	CBL-interacting protein kinase 31, CIPK-like protein 1	CIPK-LIKE PROTEIN 1		3	cold inducible gene. EC=2.7.11.1 Q6X4A2. Os-CIPK3 in Li et al. 2014. LOC_Os03g20380. KC610977-KC610989 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os03g0319400	LOC_Os03g20380.8, LOC_Os03g20380.7, LOC_Os03g20380.6, LOC_Os03g20380.5, LOC_Os03g20380.4, LOC_Os03g20380.3, LOC_Os03g20380.2, LOC_Os03g20380.1				GO:0005524 - ATP binding, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005739 - mitochondrion, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		
6117	CP1	OsCP1, Os CP1	CYSTEINE PROTEASE 1	cysteine protease1, Cysteine protease 1, Cys protease 1	CYSTEINE PROTEASE 1		4	EC=3.4.22.- Q7XR52. a Homologue of AtSAG12. LOC_Os04g57490.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0670500	LOC_Os04g57490.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0009908 - flower development, GO:0048653 - anther development, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030154 - cell differentiation, GO:0010446 - response to alkalinity	TO:0000481 - alkali sensitivity	PO:0001004 - anther development stage 
6118	CUC3	OsCUC3, ONAC107, NAC107	CUP-SHAPED COTYLEDON 3	cup-shaped cotyledon 3, NAC domain-containing protein 107, CUP-SHAPED COTYLEDON3			8	LOC_Os08g40030.	 Vegetative organ - Leaf,  Seed - Morphological traits - Embryo	Os08g0511200	LOC_Os08g40030.1				GO:0003677 - DNA binding, GO:0048508 - embryonic meristem development, GO:0045449 - regulation of transcription, GO:0009790 - embryonic development		PO:0009009 - plant embryo 
6120	DOS	OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4	DELAY OF THE ONSET OF SENESCENCE	delay of the onset of senescence, Zinc finger CCCH domain-containing protein 2, Protein DELAY OF THE ONSET OF SENESCENCE, Tandem zinc finger protein 2	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2		1	LOC_Os01g09620. AP002746. Q9FU27. PO:0000017; leaf primordium ; PO:0009049; inflorescence ; PO:0006079; shoot meristem ; PO:0009025; leaf. GRO:0007150; 5.2-late booting stage ; GRO:0007029; 07-linear grain-filling. HQ858837. C3H transcription factor.	 Heterochrony,  Coloration - Chlorophyll	Os01g0192000	LOC_Os01g09620.2, LOC_Os01g09620.1	GR:0080029			GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0010150 - leaf senescence, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000207 - plant height, TO:0002616 - flowering time, TO:0000455 - seed set percent, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content, TO:0000040 - panicle length, TO:0000227 - root length, TO:0000615 - abscisic acid sensitivity, TO:0000299 - leaf lamina color, TO:0000447 - filled grain number	PO:0000017 - vascular leaf primordium , PO:0006079 - shoot meristem , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
6121	DR8	OsDR8, OsXNP, FOXRED1	PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 8	pathogen-induced defense-responsive protein 8, defenseresponsive gene 8, XopNKXO85 binding protein, FAD dependent oxidoreductase 1, FAD dependent oxidoreductase domain containing protein 1, Defence-response protein 8	PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 8 	OsDR8-93, OsDR8-Nip	7	disease resistance-responsive gene. DQ176424. LOC_Os07g34570.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0529600	LOC_Os07g34570.2, LOC_Os07g34570.1				GO:0006952 - defense response, GO:0009409 - response to cold, GO:0009228 - thiamin biosynthetic process	TO:0000303 - cold tolerance	
6122	DRP3A	OsDRP3A	DYNAMIN RELATED PROTEIN 3A	dynamin-related protein 3A	DYNAMIN RELATED PROTEIN 3A				 Biochemical character						GO:0003374 - dynamin polymerization involved in mitochondrial fission, GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity		
6123	DRP3B	OsDRP3B	DYNAMIN RELATED PROTEIN 3B	dynamin-related protein 3B	DYNAMIN RELATED PROTEIN 3B				 Biochemical character						GO:0003374 - dynamin polymerization involved in mitochondrial fission, GO:0003924 - GTPase activity, GO:0000266 - mitochondrial fission		
6124	EBP-89	OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89	EREBP TRANSCRIPTION FACTOR	EREBP transcription factor, ethylene response factor 60, APETALA2/ethylene-responsive element binding protein 27	EREBP TRANSCRIPTION FACTOR		3	AJ312199. LOC_Os03g08460.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0182800	LOC_Os03g08460.1	GR:0061379			GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009723 - response to ethylene stimulus, GO:0003677 - DNA binding, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0006001 - salt tolerance	
6125	EIL1	OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a	ETHYLENE INSENSITIVE-LIKE GENE 1	EIN3-like protein 1, ethylene-insensitive 3, ETHYLENE INSENSITIVE3-LIKE 1, EIN3-LIKE 1, EIN3-like 1	EIN3-LIKE PROTEIN 1		3	LOC_Os03g20780. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3. DQ153245. AB074971. EIN3 in Lin et al. 2005 and Kakuraba et al. 2016. GO:0090351: seedling development. OsEIL1a in Kurota et al. 2018.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Seed,  Tolerance and resistance - Stress tolerance,  Other	Os03g0324200	LOC_Os03g20780.1				GO:0042742 - defense response to bacterium, GO:0003677 - DNA binding, GO:0009873 - ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0003700 - transcription factor activity, GO:0048364 - root development, GO:0010601 - positive regulation of auxin biosynthetic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010150 - leaf senescence, GO:0005634 - nucleus	TO:0000043 - root anatomy and morphology trait, TO:0000249 - leaf senescence, TO:0000227 - root length, TO:0000173 - ethylene sensitivity, TO:0000620 - embryo development trait, TO:0000653 - seed development trait	PO:0001054 - 4 leaf senescence stage , PO:0001031 - 4 root elongation stage 
6126	EIL2	OsEIL2	ETHYLENE INSENSITIVE-LIKE GENE 2	EIN3-like protein 2, ETHYLENE INSENSITIVE3-LIKE 2, EIN3-LIKE 2	EIN3-LIKE PROTEIN 2 		7	ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3. AB074972. HQ858833. EIL transcription factor. GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0685700	LOC_Os07g48630.2, LOC_Os07g48630.1				GO:0009873 - ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress	TO:0000429 - salt sensitivity, TO:0000173 - ethylene sensitivity	
6127	EIL3	OsEIL3	ETHYLENE INSENSITIVE-LIKE GENE 3	EIN3-like protein 3, ETHYLENE INSENSITIVE3-LIKE 3, EIN3-LIKE 3	EIN3-LIKE PROTEIN 3 		9	LOC_Os09g31400. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3.	 Other	Os09g0490200	LOC_Os09g31400.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009723 - response to ethylene stimulus		
6128	EIL4	OsEIL4	ETHYLENE INSENSITIVE-LIKE GENE 4	EIN3-like protein 4, ETHYLENE INSENSITIVE3-LIKE 4, EIN3-LIKE 4	EIN3-LIKE PROTEIN 4 		8	LOC_Os08g39830. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3.	 Other	Os08g0508700	LOC_Os08g39830.2, LOC_Os08g39830.1				GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent		
6129	EIL5	OsEIL5	ETHYLENE INSENSITIVE-LIKE GENE 5	EIN3-like protein 5, ETHYLENE INSENSITIVE3-LIKE 5, EIN3-LIKE 5	EIN3-LIKE PROTEIN 5 		2	LOC_Os02g36510. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3. AP005116.	 Other	Os02g0574800	LOC_Os02g36510.1				GO:0003700 - transcription factor activity, GO:0009723 - response to ethylene stimulus		
6130	EIL6	OsEIL6	ETHYLENE INSENSITIVE-LIKE GENE 6	EIN3-like protein 6, ETHYLENE INSENSITIVE3-LIKE 6, EIN3-LIKE 6	EIN3-LIKE PROTEIN 6 		4	LOC_Os04g38400. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3. AL606636 (OSJNBa0036B21.5).	 Other	Os04g0456900	LOC_Os04g38400.1				GO:0009723 - response to ethylene stimulus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		
6131	ENT1	OsENT1	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 1	equilibrative nucleoside transporter	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 1				 Biochemical character						GO:0015395 - nucleoside transmembrane transporter activity, down a concentration gradient		
6132	ENT2	OsENT2	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 2	equilibrative nucleoside transporter	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 2				 Biochemical character						GO:0015395 - nucleoside transmembrane transporter activity, down a concentration gradient		
6133	ENT3	OsENT3	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3	equilibrative nucleoside transporter 3	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3				 Biochemical character						GO:0015395 - nucleoside transmembrane transporter activity, down a concentration gradient		
6134	ENT4	OsENT4	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 4	equilibrative nucleoside transporter 4	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 4				 Biochemical character						GO:0015395 - nucleoside transmembrane transporter activity, down a concentration gradient		
6135	EP3A	OsEP3A	CYCTEINE ENDOPEPTIDASE	cysteine proteinase	CYSTEINE ENDOPEPTIDASE				 Biochemical character						GO:0004197 - cysteine-type endopeptidase activity		
6136	EPSPS	OsEPSPS	ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE	5-enolpyruvylshikinate 3-phospate synthase	ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE				 Biochemical character						GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity		
6137	EREBP1	OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84	ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN 1	ethylene-responsive element-binding protein 1, ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN1, Ethylene-responsive transcription factor 1, Ethylene-responsive element-binding factor 1, ethylene response factor 70, APETALA2/ethylene-responsive element binding protein 84	ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN 1		2	Q6K7E6. AF193803. LOC_Os02g54160.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0782700	LOC_Os02g54160.2, LOC_Os02g54160.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009635 - response to herbicide, GO:0005634 - nucleus, GO:0006350 - transcription	TO:0000058 - herbicide sensitivity	
6138	EXPB1B	OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1	BETA-EXPANSIN 1B	Expansin-B1, Beta-expansin-1, Major pollen allergen Ory s 1	BETA-EXPANSIN 1B		3	Q40638.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0106900	LOC_Os03g01650.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0007047 - cell wall organization, GO:0010044 - response to aluminum ion, GO:0019953 - sexual reproduction, GO:0019898 - extrinsic to membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall	TO:0000354 - aluminum sensitivity	
6139	EXPB2	OsEXPB2, OsaEXPb1.9, EXPb1.9	BETA-EXPANSIN 2	Expansin-B2, Beta-expansin-2	BETA-EXPANSIN 2		10	LOC_Os10g40710. O24230. U95968.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os10g0555700	LOC_Os10g40710.1				GO:0019898 - extrinsic to membrane, GO:0007047 - cell wall organization, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0019953 - sexual reproduction	TO:0000485 - sterility related trait	
6140	EXPB3	OsEXPB3, osaEXPb1.10, EXPb1.10	BETA-EXPANSIN 3	Expansin-B3, Beta-expansin-3	BETA-EXPANSIN 3		10	Q336T5. LOC_Os10g40720.	 Biochemical character,  Vegetative organ - Culm,  Seed - Physiological traits - Dormancy	Os10g0555900	LOC_Os10g40720.1				GO:0005618 - cell wall, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0007047 - cell wall organization, GO:0019898 - extrinsic to membrane, GO:0005576 - extracellular region, GO:0019953 - sexual reproduction	TO:0000207 - plant height	
6141	EXPB4	OsEXPB4, OsaEXPb1.7, EXPb1.7	BETA-EXPANSIN 4	Expansin-B4, Beta-expansin-4	BETA-EXPANSIN 4		10	LOC_Os10g40730. Q94LR4.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os10g0556100	LOC_Os10g40730.1				GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0007047 - cell wall organization, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0019953 - sexual reproduction, GO:0019898 - extrinsic to membrane	TO:0000085 - leaf rolling, TO:0000207 - plant height	
6142	EYA1	OsEya1, OSEya1, OSEYA1	HOMOLOG OF ANIMAL EYES ABSENT GENE	homolog of animal eyes absent gene	OSEYA1		6	The OSEya1 gene is located between the wx gene and the telomere on the short arm of chromosome 6. AB028887.	 Other	Os06g0110100 	LOC_Os06g02028.1				GO:0009653 - anatomical structure morphogenesis, GO:0007275 - multicellular organismal development, GO:0003700 - transcription factor activity, GO:0030946 - protein tyrosine phosphatase activity, metal-dependent		
6144	FCA	OsFCA, OsFCA-1, OsFCA-2, OsFCA-3, OsFCA-4, OsFCA-gamma	OSFCA PROTEIN	OsFCA protein	OSFCA PROTEIN		9	homology with Arabidopsis FCA, flowering time control protein. AY274928, AY730687. AY311343, AY311344, AY331574. PO:0009051; spikelet ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0006340; adult leaf. GRO:0007157; panicle development.	 Reproductive organ - Heading date	Os09g0123200	LOC_Os09g03610.4, LOC_Os09g03610.3, LOC_Os09g03610.2, LOC_Os09g03610.1	GR:0080002			GO:0009553 - embryo sac development, GO:0044428 - nuclear part, GO:0003723 - RNA binding, GO:0000166 - nucleotide binding, GO:0031048 - chromatin silencing by small RNA, GO:0009790 - embryonic development, GO:0009909 - regulation of flower development	TO:0000137 - days to heading, TO:0000052 - primary branching of inflorescence	PO:0006340 - adult vascular leaf , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009051 - spikelet 
6145	FEN1	OsFEN1, OsFEN-1a, FEN-1	FLAP ENDONUCLEASE 1	flap endonuclease-1, Flap endonuclease-1a	FLAP ENDONUCLEASE 1		5	Q9SXQ6. AU108651, AB021666.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0540100	LOC_Os05g46270.1				GO:0004519 - endonuclease activity, GO:0000287 - magnesium ion binding, GO:0006281 - DNA repair, GO:0003677 - DNA binding, GO:0048256 - flap endonuclease activity, GO:0010332 - response to gamma radiation, GO:0005634 - nucleus		
6146	FOR1	OsFOR1, Osfor1	FLORAL ORGAN REGULATOR 1	rice floral organ regulator-1, Floral organ regulator 1	FLORAL ORGAN REGULATOR 1		7	Q8GT95. PO:0004706; flower primordium ; PO:0006318; floret (sensu Poaceae) ; PO:0005052; callus. GRO:0007158; spikelet development ; GRO:0007157; panicle development. AF466357. AAO17320. Polygalacturonase-inhibiting protein, PGIP protein	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0568700	LOC_Os07g38130.1	GR:0080005			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0032940 - secretion by cell, GO:0030154 - cell differentiation, GO:0005515 - protein binding, GO:0048833 - specification of floral organ number, GO:0004857 - enzyme inhibitor activity	TO:0000223 - pistil anatomy and morphology trait, TO:0000208 - lemma number, TO:0000209 - palea number, TO:0000225 - stamen number, TO:0000657 - spikelet anatomy and morphology trait	PO:0004706 - flower primordium , PO:0005052 - plant callus , PO:0009082 - spikelet floret 
6147	GAE1	OsGAE1	GIBBERELLIN-REGULATED GENE	gibberellin-regulated gene					 Vegetative organ - Shoot apical meristem(SAM)						GO:0010476 - gibberellin-mediated signaling		
6149	GLU	OsGLU	PUTATIVE MEMBRANE-BOUND ENDO-1,4-BETA-D-GLUCANASE	putative membrane-bound endo-1, 4-beta-D-glucanase	PUTATIVE MEMBRANE-BOUND ENDO-1,4-BETA-D-GLUCANASE		3		 Biochemical character						GO:0008810 - cellulase activity		
6150	GNA1	OsGNA1	GLUCOSAMINE-6-P ACETYLTRANSFERASE 1	glucosamine-6-P acetyltransferase-1	GLUCOSAMINE-6-P ACETYLTRANSFERASE 1		9	Root elongation. LOC_Os09g31310. Q5U9F2.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os09g0488000	LOC_Os09g31310.1				GO:0005789 - endoplasmic reticulum membrane, GO:0006045 - N-acetylglucosamine biosynthetic process, GO:0004343 - glucosamine 6-phosphate N-acetyltransferase activity, GO:0048364 - root development, GO:0006048 - UDP-N-acetylglucosamine biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000227 - root length, TO:0000207 - plant height, TO:0000432 - temperature response trait	PO:0001031 - 4 root elongation stage 
6151	OSH69	Osh69	LEAF SENESCENCE	alkaline alpha-galactosidase					 Vegetative organ - Leaf						GO:0047274 - galactinol-sucrose galactosyltransferase activity		
6154	HOX3	Oshox3, OsHox3	HOMEOBOX GENE 3	rice homeobox gene 3, Homeobox-leucine zipper protein HOX3, Homeodomain transcription factor HOX3, HD-ZIP protein HOX3	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX3		1	Q9XH38(indica), Q0JKX1(japonica).	 Other	Os01g0643600	LOC_Os01g45570.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0006350 - transcription		
6155	HOX4	Oshox4, OsHox4	HOMEOBOX GENE 4	rice homeobox gene 4, Homeobox-leucine zipper protein HOX4, Homeodomain transcription factor HOX4, HD-ZIP protein HOX4, HOMEOBOX4	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX4		9	LOC_Os09g29460. EF555524, AF145728. Q9XH37(indica), Q6K498(japonica).	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Other	Os09g0470500	LOC_Os09g29460.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0009740 - gibberellic acid mediated signaling, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0009685 - gibberellin metabolic process, GO:0003700 - transcription factor activity	TO:0000207 - plant height, TO:0000346 - tiller number	
6156	HOX5	Oshox5, OsHox5, EIP9	HOMEOBOX GENE 5	rice homeobox gene 5, Homeobox-leucine zipper protein HOX5, Homeodomain transcription factor HOX5, HD-ZIP protein HOX5, EBR1-interacting protein 9	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX5		8	LOC_Os08g32085. LOC_Os08g32080. EF555525, AF145729. Q9XH36(indica), Q6ZA74(japonica).	 Seed,  Other	Os08g0416000	LOC_Os08g32085.1, LOC_Os08g32080.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006350 - transcription	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
6157	HOX6	Oshox6, OsHox6	HOMEOBOX GENE 6	rice homeobox gene 6, Homeobox-leucine zipper protein HOX6, Homeodomain transcription factor HOX6, HD-ZIP protein HOX6	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX6		9	LOC_Os09g35910. EF555526, AF145730,  AK103160. Q9XH35(indica), Q651Z5(japonica).	 Other	Os09g0528200	LOC_Os09g35910.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
6158	HOX7	Oshox7, OsHox7	HOMEOBOX GENE 7	rice homeobox gene 7, Homeobox-leucine zipper protein HOX7, Homeodomain transcription factor HOX7, HD-ZIP protein HOX7	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX7		2	Os02g35770. EF555527, AF145731. A2X674(indica), Q0E0A6(japonica).	 Other	Os02g0565600	LOC_Os02g35770.2, LOC_Os02g35770.1				GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
6159	HSP	Oshsp	SMALL HEAT SHOCK PROTEIN	small heat shock protein	SMALL HEAT SHOCK PROTEIN				 Tolerance and resistance - Stress tolerance						GO:0003773 - heat shock protein activity, GO:0042026 - protein refolding, GO:0009408 - response to heat		
6160	HSP101	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C	HEAT SHOCK PROTEIN 101	Heat shock protein 101, class I Clp ATPase B-CYT, Clp-B cytoplasmic, Heat shock protein 101, ClpB/Hsp100 cytoplasmic isoform	HEAT SHOCK PROTEIN 101		5	small heat shock protein. Q6F2Y7. AJ316025. AU093088. LOC_Os05g44340.	 Tolerance and resistance - Stress tolerance	Os05g0519700	LOC_Os05g44340.1				GO:0019538 - protein metabolic process, GO:0005515 - protein binding, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0006950 - response to stress, GO:0017111 - nucleoside-triphosphatase activity	TO:0000259 - heat tolerance	
6161	HSP16.9A	Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI	16.9 KDA CLASS I HEAT SHOCK PROTEIN 1	16.9 kDa class I heat shock protein 1, 16.9 kDa heat shock protein 1	16.9 KDA CLASS I HEAT SHOCK PROTEIN 1 		1	small heat shock protein. P27777. M80938. X60820.	 Tolerance and resistance - Stress tolerance	Os01g0136100	LOC_Os01g04370.1				GO:0010286 - heat acclimation, GO:0009644 - response to high light intensity, GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0051259 - protein oligomerization, GO:0042542 - response to hydrogen peroxide	TO:0000259 - heat tolerance, TO:0000653 - seed development trait	
6162	HSP16.9B	Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3	16.9 KDA CLASS I HEAT SHOCK PROTEIN 2	16.9 kDa class I heat shock protein 2, 16.9 kDa heat shock protein 2	16.9 KDA CLASS I HEAT SHOCK PROTEIN 2 		1	small heat shock protein. Q943E6. M80939. OsSHSP2 in Ham et al. 2013. LOC_Os01g04380. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0136200	LOC_Os01g04380.1				GO:0009408 - response to heat, GO:0009644 - response to high light intensity, GO:0005737 - cytoplasm, GO:0010286 - heat acclimation, GO:0042542 - response to hydrogen peroxide	TO:0000259 - heat tolerance	PO:0009066 - anther 
6163	HSP16.9C	Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C	16.9 KDA CLASS I HEAT SHOCK PROTEIN 3	16.9 kDa class I heat shock protein 3, 16.9 kDa heat shock protein 3	16.9 KDA CLASS I HEAT SHOCK PROTEIN 3 		1	small heat shock protein. Q943E7. U81385. LOC_Os01g04360.	 Tolerance and resistance - Stress tolerance	Os01g0136000	LOC_Os01g04360.1				GO:0009408 - response to heat, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
6164	HSP16.9D	Oshsp16.9D	16.9 KDA CLASS I HEAT SHOCK PROTEIN 4	16.9 kDa small heat shock protein 4	16.9 KDA CLASS I HEAT SHOCK PROTEIN 4				 Tolerance and resistance - Stress tolerance						GO:0042026 - protein refolding, GO:0009408 - response to heat, GO:0003773 - heat shock protein activity	TO:0000259 - heat tolerance	
6165	HSP17.3	OsHsp17.3, OsHSP17.3, Oshsp17.3	17.3 KDA CLASS I HEAT SHOCK PROTEIN 	17.3 kDa class I heat shock protein, 17.3 kDa heat shock protein, 17.3-kD class I heat shock protein	17.3 KDA CLASS I HEAT SHOCK PROTEIN 		3	LOC_Os03g16020. small heat shock protein. Class-I Low-Molecular-Mass Heat-Shock Protein. U83669. P31673. M80186. HSP20 in Sato et al. 2016.	 Tolerance and resistance - Stress tolerance	Os03g0266900	LOC_Os03g16020.1				GO:0003773 - heat shock protein activity, GO:0046686 - response to cadmium ion, GO:0042026 - protein refolding, GO:0046685 - response to arsenic, GO:0045471 - response to ethanol, GO:0042542 - response to hydrogen peroxide, GO:0005737 - cytoplasm, GO:0046688 - response to copper ion, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
6166	HSP17.7	OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7	17.7 KDA CLASS I HEAT SHOCK PROTEIN	17.7 kDa class I heat shock protein, 17.7 kDa heat shock protein, 17.7-kD class I heat shock protein	17.7 KDA CLASS I HEAT SHOCK PROTEIN 		3	small heat shock protein. Class-I Low-Molecular-Mass Heat-Shock Protein. Q84J50. AAC78394. U83671.	 Tolerance and resistance - Stress tolerance	Os03g0267200	LOC_Os03g16040.1				GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0045471 - response to ethanol, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
6167	HSP17.9A	Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9	17.9 KDA CLASS I HEAT SHOCK PROTEIN 1	17.9 kDa class I heat shock protein, 17.9 kDa heat shock protein 1, 17.9-kD class I heat shock protein	17.9 KDA CLASS I HEAT SHOCK PROTEIN 1		3	small heat shock protein. Q84Q77. AY034057. LOC_Os03g15960. HSP20 in Sato et al. 2016.	 Tolerance and resistance - Stress tolerance	Os03g0266300	LOC_Os03g15960.2, LOC_Os03g15960.1				GO:0009408 - response to heat, GO:0005634 - nucleus	TO:0000259 - heat tolerance	
6168	HSP17.9B	Oshsp17.9B., OsHsp17.9B	17.9 KDA HEAT SHOCK PROTEIN 2	17.9 kDa heat shock protein 2	17.9 KDA HEAT SHOCK PROTEIN 2		1	small heat shock protein. Q943E9.	 Tolerance and resistance - Stress tolerance	Os01g0135900	LOC_Os01g04350.1				GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000259 - heat tolerance	
6169	HSP18.0-CII	OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2	18.0 KDA CLASS II HEAT SHOCK PROTEIN	18.0 kDa class II heat shock protein, small heat shock protein 18.0	18.0 KDA CLASS II HEAT SHOCK PROTEIN 		1	small heat shock protein. Q5VRY1. DQ180746. OsHSP18.2 in Kaur et al. 2015. LOC_Os01g08860. GO:2000031: regulation of salicylic acid mediated signaling pathway.	 Seed - Physiological traits - Longevity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0184100	LOC_Os01g08860.2, LOC_Os01g08860.1				GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0007568 - aging, GO:0010431 - seed maturation, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0046907 - intracellular transport, GO:0005635 - nuclear envelope, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium	TO:0000435 - seed longevity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000250 - vigor related trait, TO:0002661 - seed maturation, TO:0000430 - germination rate	PO:0007632 - seed maturation stage , PO:0009010 - seed 
6170	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1	INOSITOL 1-PHOSPHATE SYNTHASE-1	inositol 1-phosphate synthase-1, Inositol-3-phosphate synthase, Myo-inositol-1-phosphate synthase, MI-1-P synthase, 1D-myo-inositol 3-phosphate synthase 1, rice myo-inositol-1-phosphate synthase, Ins(1)P1 synthase 1, 1L-myo-inositol-1-phosphate synthase 1, myo-inositol-1-phosphate synthase 1, L-myo-inositol 1-phosphate synthase 1	INOSITOL 1-PHOSPHATE SYNTHASE-1		3	EC=5.5.1.4 O64437. PO:0009009; embryo ; PO:0009010; seed. AB012107. AF412340 (PINO1: Porteresia coarctata (=Oryza coarctata) INO1). FJ237299 (PcINO1-1: Oryza coarctata INO1-1).  OgINO1 (Oryza glaberrima INO1).  AB060300 (promoter region).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0192700	LOC_Os03g09250.4, LOC_Os03g09250.3, LOC_Os03g09250.2, LOC_Os03g09250.1	GR:0061378			GO:0009744 - response to sucrose stimulus, GO:0008654 - phospholipid biosynthetic process, GO:0005737 - cytoplasm, GO:0004512 - inositol-3-phosphate synthase activity, GO:0005488 - binding, GO:0006793 - phosphorus metabolic process, GO:0006021 - inositol biosynthetic process, GO:0009737 - response to abscisic acid stimulus	TO:0000488 - seed composition based quality trait, TO:0002666 - seed phosphorus content, TO:0000064 - embryo related trait, TO:0000615 - abscisic acid sensitivity	PO:0009009 - plant embryo , PO:0009010 - seed 
6171	IPT1	OsIPT1	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 1	adenosine phosphate isopentenyltransferase 1, isopentenyltransferase 1	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 1		3	AB239797. adenylate isopentenyltransferase.	 Biochemical character,  Character as QTL - Yield and productivity						GO:0005524 - ATP binding, GO:0009691 - cytokinin biosynthetic process, GO:0008033 - tRNA processing, GO:0005737 - cytoplasm, GO:0016740 - transferase activity, GO:0009824 - adenylate dimethylallyltransferase activity	TO:0000456 - spikelet number, TO:0000011 - nitrogen sensitivity	
6172	IPT2	OsIPT2	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 2	adenosine phosphate isopentenyltransferase 2, isopentenyltransferase 2	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 2		3	AB239798. adenylate isopentenyltransferase.	 Biochemical character,  Character as QTL - Yield and productivity	Os03g0356900 	LOC_Os03g24240.1				GO:0005524 - ATP binding, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0016740 - transferase activity, GO:0009691 - cytokinin biosynthetic process, GO:0008033 - tRNA processing, GO:0005737 - cytoplasm	TO:0000011 - nitrogen sensitivity, TO:0000456 - spikelet number	
6173	IPT3	OsIPT3	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 3	adenosine phosphate isopentenyltransferase 3, isopentenyltransferase 3	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 3		5	AB239799. adenylate isopentenyltransferase.	 Biochemical character,  Character as QTL - Yield and productivity	Os05g0311801					GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0008033 - tRNA processing, GO:0016740 - transferase activity, GO:0052381 - tRNA dimethylallyltransferase activity, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0009691 - cytokinin biosynthetic process, GO:0006400 - tRNA modification, GO:0005737 - cytoplasm	TO:0000456 - spikelet number, TO:0000011 - nitrogen sensitivity	
6174	IPT4	OsIPT4	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 4	adenosine phosphate isopentenyltransferase 4, isopentenyltransferase 4	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 4		3	AB239800. adenylate isopentenyltransferase. GO:1901698: response to nitrogen compound. 	 Biochemical character,  Vegetative organ - Root,  Character as QTL - Yield and productivity	Os03g0810100 	LOC_Os03g59570.1				GO:0010167 - response to nitrate, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0009536 - plastid, GO:0009691 - cytokinin biosynthetic process, GO:0008033 - tRNA processing, GO:0060359 - response to ammonium ion, GO:0016740 - transferase activity, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding	TO:0000456 - spikelet number, TO:0000163 - auxin sensitivity, TO:0000011 - nitrogen sensitivity	PO:0009005 - root 
6175	IPT5	OsIPT5	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 5	adenosine phosphate isopentenyltransferase 5, isopentenyltransferase 5	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 5 		7	AB239801. adenylate isopentenyltransferase. GO:1901698: response to nitrogen compound.	 Biochemical character	Os07g0211700	LOC_Os07g11050.1				GO:0060359 - response to ammonium ion, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding, GO:0008033 - tRNA processing, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0009536 - plastid, GO:0009691 - cytokinin biosynthetic process, GO:0010167 - response to nitrate, GO:0016740 - transferase activity	TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity	
6176	IPT6	OsIPT6, OsIPT6.p	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 6	adenosine phosphate isopentenyltransferase 6, isopentenyltransferase 6, adenosine phosphate isopentenyltransferase 6 pseudogene	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 6			AB239802, AB239803. adenylate isopentenyltransferase.	 Biochemical character						GO:0016740 - transferase activity, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0009691 - cytokinin biosynthetic process, GO:0008033 - tRNA processing, GO:0005524 - ATP binding		
6177	IPT7	OsIPT7	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 7	adenosine phosphate isopentenyltransferase 7, isopentenyltransferase 7	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 7		5	AB239804. adenylate isopentenyltransferase. GO:1901698: response to nitrogen compound.	 Biochemical character,  Character as QTL - Yield and productivity	Os05g0551700 	LOC_Os05g47840.1				GO:0016740 - transferase activity, GO:0005739 - mitochondrion, GO:0010167 - response to nitrate, GO:0060359 - response to ammonium ion, GO:0008033 - tRNA processing, GO:0009691 - cytokinin biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0005524 - ATP binding	TO:0000163 - auxin sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000456 - spikelet number	
6178	IPT8	OsIPT8	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 8	adenosine phosphate isopentenyltransferase 8, isopentenyltransferase 8	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 8		1	AB239805. AB853903. adenylate isopentenyltransferase. GO:1901698: response to nitrogen compound.	 Biochemical character,  Character as QTL - Yield and productivity	Os01g0688300	LOC_Os01g49390.1				GO:0005524 - ATP binding, GO:0016740 - transferase activity, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0008033 - tRNA processing, GO:0009691 - cytokinin biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0009536 - plastid	TO:0000456 - spikelet number, TO:0000163 - auxin sensitivity, TO:0000011 - nitrogen sensitivity	PO:0009006 - shoot system 
6179	ISA2	OsISA2	ISOAMYLASE 2	isoamylase-2, isoamylase 2	ISOAMYLASE 2		5	AC132483. OsISA2 was highly expressed in both endosperm and leaves.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os05g0393700	LOC_Os05g32710.1				GO:0043169 - cation binding, GO:0019156 - isoamylase activity		
6180	ISA3	OsISA3	ISOAMYLASE 3	isoamylase-3, isoamylase3	ISOAMYLASE 3	isa3	9	AP005574. OsISA3 transcript was extremely low in endosperm, whereas it was expressed in leaves.	 Biochemical character	Os09g0469400	LOC_Os09g29404.3, LOC_Os09g29404.2, LOC_Os09g29404.1				GO:0043169 - cation binding, GO:0019156 - isoamylase activity		
6181	SAP1	Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1	STRESS ASSOCIATED PROTEIN GENE 1	rice (indica) stress associated protein gene1, Zinc finger A20 and AN1 domain-containing stress-associated protein 1, Multiple stress-responsive zinc finger protein ISAP1, O. sativa subspecies indica stress-associated protein 1, stress-associated protein 1	STRESS ASSOCIATED PROTEIN 1		9	A2Z2J6(indica), A3C039(japonica). AF140722, AY137590. LOC_Os09g31200. KC610891-KC610901 (O. sativa and wild rice species, partial ads). an A20/AN1 zinc-finger containing protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0486500	LOC_Os09g31200.1				GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0006952 - defense response, GO:0009607 - response to biotic stimulus, GO:0009611 - response to wounding, GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding, GO:0080134 - regulation of response to stress, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0009753 - response to jasmonic acid stimulus, GO:0006950 - response to stress, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000112 - disease resistance, TO:0000179 - biotic stress trait, TO:0000172 - jasmonic acid sensitivity	
6182	OSK1	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a	PROTEIN KINASE 1	protein kinase 1, SnRK1A protein kinase, sucrose non-fermenting-1 related protein kinase 1a	PROTEIN KINASE 1	snrk1a	5	LOC_Os05g45420. D82039. AB101655. GO:0080151: positive regulation of salicylic acid mediated signaling pathway. GO:1900426: positive regulation of defense response to bacterium.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0530500 	LOC_Os05g45420.3, LOC_Os05g45420.2, LOC_Os05g45420.1				GO:0050832 - defense response to fungus, GO:0051511 - negative regulation of unidimensional cell growth, GO:0045926 - negative regulation of growth, GO:0005524 - ATP binding, GO:0009863 - salicylic acid mediated signaling pathway, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0007165 - signal transduction, GO:0042742 - defense response to bacterium, GO:2000028 - regulation of photoperiodism, flowering, GO:0006468 - protein amino acid phosphorylation, GO:0010182 - sugar mediated signaling, GO:0004674 - protein serine/threonine kinase activity, GO:0051093 - negative regulation of developmental process, GO:0009845 - seed germination, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009628 - response to abiotic stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease, TO:0000346 - tiller number, TO:0000457 - total biomass yield, TO:0000356 - brown spot disease resistance, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000227 - root length, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000253 - seed dormancy, TO:0000615 - abscisic acid sensitivity, TO:0000280 - seedling vigor, TO:0000168 - abiotic stress trait	
6183	OSK2	osk2	PROTEIN KINASE 2	protein kinase 2	PROTEIN KINASE 2			D82037.	 Biochemical character						GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0009960 - endosperm development, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation		
6184	OSK3	osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35	PROTEIN KINASE 3	protein kinase 3, autophagy 1b, AUTOPHAGY ASSOCIATED GENE 1B, protein kinase 5, sucrose non-fermenting-1 related protein kinase 1b	PROTEIN KINASE 3		3	D82038, D82036. AB101657.	 Biochemical character	Os03g0289100	LOC_Os03g17980.2, LOC_Os03g17980.1				GO:0006468 - protein amino acid phosphorylation, GO:0046777 - protein amino acid autophosphorylation, GO:0009960 - endosperm development, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0005524 - ATP binding		
6185	OSK4	osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b	PROTEIN KINASE 4	protein kinase 4, autophagy 1c, AUTOPHAGY ASSOCIATED GENE 1C, SnRK1B protein kinase, sucrose non-fermenting-1 related protein kinase 1b	PROTEIN KINASE 4		8	D82035. BAA36299. AB101656. TO:0020101: starch mobilization. LOC_Os08g37800.	 Biochemical character,  Reproductive organ - Heading date,  Seed - Morphological traits - Endosperm	Os08g0484600	LOC_Os08g37800.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0009960 - endosperm development	TO:0000653 - seed development trait, TO:0000137 - days to heading	
6187	OSKAPP	OsKAPP, OsPP94	KINASE-ASSOCIATED TYPE 2C PROTEIN PHOSPHATASE	kinase-associated type 2C protein phosphatase, kinase-associated PP, kinase associated protein phosphatase, Protein phosphatase 94	KINASE-ASSOCIATED TYPE 2C PROTEIN PHOSPHATASE		7	AF075603. LOC_Os07g11010.	 Biochemical character	Os07g0211400	LOC_Os07g11010.2, LOC_Os07g11010.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0016301 - kinase activity, GO:0004722 - protein serine/threonine phosphatase activity, GO:0009934 - regulation of meristem structural organization, GO:0005886 - plasma membrane, GO:0019901 - protein kinase binding, GO:0007165 - signal transduction		
6190	OSKN2	OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2	KNOX PROTEIN 2	KNOX protein 2, Oryza sativa homeobox71, Homeobox protein knotted-1-like 10, Homeobox protein OSH71, Homeobox protein HOS9, Homeobox protein knotted-1-like 2, Rice KNOX gene-71	KNOX PROTEIN 2		5	Class 1 KNOX gene. Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. AF323785. CI740419. A2Y007(indica). Q7GDL5(japonica). PO:0009025; leaf.	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date	Os05g0129700	LOC_Os05g03884.1	GR:0061314			GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000492 - leaf shape, TO:0000207 - plant height, TO:0002616 - flowering time	PO:0009025 - vascular leaf 
6209	MADS24	OsMADS24, MADS8, OsMADS8, OsMADS8/24	MADS BOX GENE24	MADS box gene24, MADS-box protein 24, MADS-box transcription factor 8	MADS-BOX PROTEIN 24		9	LOC_Os09g32948. Q9SAR1. a SEP3-like gene. MADS8 in Song et al. 2018.	 Reproductive organ - Heading date,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os09g0507200	LOC_Os09g32948.1				GO:0010229 - inflorescence development, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005515 - protein binding, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0030154 - cell differentiation, GO:0010582 - floral meristem determinacy	TO:0000622 - flower development trait, TO:0002616 - flowering time, TO:0006023 - lodicule development trait, TO:0000215 - stamen anatomy and morphology trait, TO:0006009 - lodicule anatomy and morphology trait, TO:0006012 - carpel anatomy and morphology trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000245 - pollen free, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0025585 - floral organ formation stage , PO:0001048 - palea development stage , PO:0001047 - lemma development stage , PO:0001049 - lodicule development stage 
6220	MAPK5A	OsMAPK5a	MITOGEN-ACTIVATED PROTEIN KINASE 5A	Mitogen-activated protein kinase 6	MITOGEN-ACTIVATED PROTEIN KINASE 5A				 Biochemical character						GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004707 - MAP kinase activity		
6221	MAPK6	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6	MITOGEN-ACTIVATED PROTEIN KINASE 6	Mitogen-activated protein kinase 1, MAP kinase 1, MAP kinase 6	MITOGEN-ACTIVATED PROTEIN KINASE 6	mpk6, osmpk6, osmpk6-1, osmpk6-2	6	EC=2.7.11.24 AB183398. AJ535841. Q84UI5. Gene Expression Omnibus database: GSE18787. A major ABA-activated MAPK.  OsMPK1 in Yoo et al. 2014, Nanda et al. 2018, Ni et al. 2019. OsMPK6 in Jalmi and Sinha 2016, Hu et al. 2018. GO:0080148: negative regulation of response to water deprivation. TO:0000847: panicle inflorescence morphology trait.	 Biochemical character,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os06g0154500	LOC_Os06g06090.2, LOC_Os06g06090.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0010229 - inflorescence development, GO:0009409 - response to cold, GO:0080136 - priming of cellular response to stress, GO:0009738 - abscisic acid mediated signaling, GO:0009611 - response to wounding, GO:0004707 - MAP kinase activity, GO:2000037 - regulation of stomatal complex patterning, GO:0010120 - camalexin biosynthetic process, GO:0009651 - response to salt stress, GO:0009524 - phragmoplast, GO:0006952 - defense response, GO:0005524 - ATP binding, GO:0005802 - trans-Golgi network, GO:0006979 - response to oxidative stress, GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway, GO:0006468 - protein amino acid phosphorylation, GO:0000165 - MAPKKK cascade, GO:0009723 - response to ethylene stimulus, GO:0042542 - response to hydrogen peroxide, GO:0048481 - ovule development, GO:0009737 - response to abscisic acid stimulus, GO:0009574 - preprophase band, GO:0048364 - root development, GO:0009735 - response to cytokinin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0009733 - response to auxin stimulus, GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway, GO:0051301 - cell division, GO:2000038 - regulation of stomatal complex development, GO:0010200 - response to chitin	TO:0000273 - armyworm resistance, TO:0000447 - filled grain number, TO:0000172 - jasmonic acid sensitivity, TO:0000454 - stem borer resistance, TO:0000621 - inflorescence development trait, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000439 - fungal disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0002669 - diterpenoid phytoalexin content, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity, TO:0000074 - blast disease, TO:0000163 - auxin sensitivity	PO:0001083 - inflorescence development stage , PO:0007520 - root development stage 
6224	MSRMK2	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3	MULTIPLE STRESS RESPONSIVE MAP KINASE 2	multiple stress responsive MAP kinase 2, Mitogen-activated protein kinase 5, MAP kinase 5, Benzothiadiazole-induced MAP kinase 1, BTH-induced MAPK 1, MAP kinase 2, Multiple stress-responsive MAP kinase 2, MAP kinase 3	MULTIPLE STRESS RESPONSIVE MAP KINASE 2		3	AJ486975, AF479883, AF216315, AF479884, AJ250311. AF332873. BF889466. EC=2.7.11.24 A2XFC8(indica), Q10N20(japonica). LOC_Os03g17700. DQ826422 (indica). a putative meiosis-related gene. OsMPK3 in Jalmi and Sinha 2016, Hu et al. 2018. MPK5 in Lin et al. 2017, Zhang et al. 2018, Nanda et al. 2018. up-regulated after fertilization (Abiko et al. 2013).	 Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os03g0285800	LOC_Os03g17700.1				GO:0009814 - defense response, incompatible interaction, GO:0080027 - response to herbivore, GO:0005524 - ATP binding, GO:2000038 - regulation of stomatal complex development, GO:0006468 - protein amino acid phosphorylation, GO:0006970 - response to osmotic stress, GO:0000169 - activation of MAPK activity involved in osmosensory signaling pathway, GO:0080136 - priming of cellular response to stress, GO:0010200 - response to chitin, GO:0009651 - response to salt stress, GO:0010120 - camalexin biosynthetic process, GO:0009411 - response to UV, GO:0009611 - response to wounding, GO:0006979 - response to oxidative stress, GO:2000037 - regulation of stomatal complex patterning, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0048481 - ovule development, GO:0009738 - abscisic acid mediated signaling, GO:0048364 - root development, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0004707 - MAP kinase activity, GO:0000165 - MAPKKK cascade, GO:0009617 - response to bacterium, GO:0006952 - defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0002213 - defense response to insect, GO:0009723 - response to ethylene stimulus, GO:0007126 - meiosis, GO:0009413 - response to flooding, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009751 - response to salicylic acid stimulus, GO:0009790 - embryonic development	TO:0000273 - armyworm resistance, TO:0000454 - stem borer resistance, TO:0000439 - fungal disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0002669 - diterpenoid phytoalexin content, TO:0000173 - ethylene sensitivity, TO:0000286 - submergence sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000160 - UV light sensitivity, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000112 - disease resistance, TO:0000424 - brown planthopper resistance, TO:0006003 - oligosaccharide content	PO:0007520 - root development stage 
6226	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8	METALLOTHIONEIN2B	METALLOTHIONEIN2b, Metallothionein-like protein 2C, Class I metallothionein-like protein 2C, type 2 metallothionein b1, type 2 metallothionein b2, metallothionein 1	METALLOTHIONEIN2B		5	LOC_Os05g02070. EF584509. A2XZL0(indica), A3AZ88(japonica). U77294. U57638. met1 in Miyashita et al. 2005. AB175784-AB175796 (O. rufipogon). EF533993 (promoter sequence). D23569. Similar to B22EL8 protein. GO:0072593: reactive oxygen species metabolic process. OsMT2b in Wong et al. 2004, Kumar et al. 2012. OsMT-I-2c in Zhou et al. 2006.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0111300	LOC_Os05g02070.3, LOC_Os05g02070.2				GO:0060548 - negative regulation of cell death, GO:0046872 - metal ion binding, GO:0005829 - cytosol		
6227	MU	OsMu element	MU-LIKE TRANSPOSABLE ELEMENTS	Mu-like transpoaable elements					 Other								
6228	NAC1	OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027	NAC DOMAIN-CONTAINING PROTEIN 1	NAC domain-containing protein 027, NAC domain-containing protein 27, Oryza miR164-targeted NAC1, miR164-targeted NAC1	NAC DOMAIN-CONTAINING PROTEIN 1		2	LOC_Os02g36880.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0579000 	LOC_Os02g36880.4, LOC_Os02g36880.3, LOC_Os02g36880.2, LOC_Os02g36880.1				GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0045449 - regulation of transcription	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
6229	NAC2	OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2	NAC DOMAIN-CONTAINING PROTEIN 2	NAC domain-containing protein 004, NAC domain-containing protein 4, NAC domain-containing protein 34, NAC domain-containing protein 58, miR164-targeted NAC2, Oryza miR164-targeted NAC2, Oryza sativa tillering1, ORESARA 1.2	NAC DOMAIN-CONTAINING PROTEIN 2		4	DQ520641. LOC_Os04g38720. OsNAC2 in Kikuchi et al. 2000. Ostil1 and OsNAC2 in Mao et al. 2007. a homolog of Arabidopsis thaliana ORESARA 1. GO:1902512: positive regulation of apoptotic DNA fragmentation.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other	Os04g0460600	LOC_Os04g38720.1				GO:0048573 - photoperiodism, flowering, GO:0045449 - regulation of transcription, GO:0009740 - gibberellic acid mediated signaling, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0010942 - positive regulation of cell death, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress	TO:0002616 - flowering time, TO:0000567 - tiller angle, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000017 - anatomy and morphology related trait, TO:0000450 - grain yield per panicle, TO:0000040 - panicle length, TO:0002759 - grain number, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0002768 - spikelet length, TO:0000346 - tiller number, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0000249 - leaf senescence, TO:0000166 - gibberellic acid sensitivity, TO:0000145 - internode length, TO:0002639 - shoot branching	PO:0001054 - 4 leaf senescence stage 
6234	NAC7	OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93	NAC DOMAIN-CONTAINING PROTEIN 7	OsNAC7 protein, NAC domain-containing protein 76, NAC domain-containing protein 093, NAC domain-containing protein 93	NAC DOMAIN-CONTAINING PROTEIN 7		6	AB028186. Q5Z6B6. LOC_Os06g33940.	 Other	Os06g0530400	LOC_Os06g33940.2, LOC_Os06g33940.1				GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0005634 - nucleus		
6235	NAC8	OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3	NAC DOMAIN-CONTAINING PROTEIN 8	OsNAC8 protein, NAC domain-containing protein 8, NAC domain-containing protein 074, NAC domain-containing protein 74, NAC membrane-bound transcription factor 3, NAC MTF3	NAC DOMAIN-CONTAINING PROTEIN 8		1	AB028187. Q7GCL7. LOC_Os01g15640.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0261200	LOC_Os01g15640.1				GO:0009408 - response to heat, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0048366 - leaf development, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000655 - leaf development trait, TO:0006001 - salt tolerance	PO:0001050 - leaf development stage 
6236	NAM	OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2	NO APICAL MERISTEM	no apical meristem, Petunia NO APICAL MERISTEM ortholog, miR164-targeted NAC5, Oryza miR164-targeted NAC5, NAC domain-containing protein 092, NAC domain-containing protein 92			6	LOC_Os06g23650. ortholog of A. thaliana CUC2.	 Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Stress tolerance	Os06g0344900	LOC_Os06g23650.1				GO:0009790 - embryonic development, GO:0045449 - regulation of transcription, GO:0048508 - embryonic meristem development, GO:0003677 - DNA binding	TO:0000276 - drought tolerance	
6237	NAR2.1	OsNAR2.1, OsNRT3.1A	ACTIVATOR FOR NRT2	activator for NRT2, high-affinity nitrate transporter-activating element 2.1	ACTIVATOR FOR NRT2	osnar2.1	2	Q6ZI50. TO:0020093: nitrogen content. TO:0020098: nitrate sensitivity. TO:0000870: leaf yield trait. GO:1902025: nitrate import. OsNRT3.1A in Plett et al. 2010. GO:1902584: positive regulation of response to water deprivation.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0595900	LOC_Os02g38230.1				GO:0009414 - response to water deprivation, GO:0042128 - nitrate assimilation, GO:0005886 - plasma membrane, GO:0009611 - response to wounding, GO:0010167 - response to nitrate, GO:0015112 - nitrate transmembrane transporter activity, GO:0019740 - nitrogen utilization	TO:0000136 - relative water content, TO:0001017 - water use efficiency, TO:0001015 - photosynthetic rate, TO:0000495 - chlorophyll content, TO:0000276 - drought tolerance, TO:0000543 - leaf nitrogen content, TO:0000396 - grain yield, TO:0000457 - total biomass yield, TO:0000078 - root dry weight	
6238	NAR2.2	OsNAR2.2, OsNRT3.1B	ACTIVATOR FOR NRT2	activator for NRT2, high-affinity nitrate transporter-activating element 2.2	ACTIVATOR FOR NRT2		4	LOC_Os04g40410. Q7XK12. OsNRT3.1B in Plett et al. 2010.	 Vegetative organ - Root	Os04g0480200	LOC_Os04g40410.1				GO:0042128 - nitrate assimilation, GO:0015706 - nitrate transport, GO:0010167 - response to nitrate, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
6242	OSNOP	Osnop, nop	NO POLLEN	no pollen gene, no pollen, C2 and GRAM domain containing protein; Osnop	C2 AND GRAM DOMAIN CONTAINING PROTEIN OSNOP		6	AY702084. C2 and GRAM domain containing protein. PO:0006442; anther (sensu Poaceae) ; PO:0006345; pollen tube. GRO:0007198; panicle stage PA7 ; GRO:0007230; stamen stage ST6-5. KC610865-KC610877 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0607900	LOC_Os06g40570.1	GR:0080011			GO:0005739 - mitochondrion, GO:0010152 - pollen maturation, GO:0019722 - calcium-mediated signaling, GO:0048015 - phosphoinositide-mediated signaling	TO:0000396 - grain yield, TO:0000245 - pollen free	PO:0006345 - pollen tube , PO:0009066 - anther 
6243	NRAMP1	OsNramp1, OsNRAMP1, OsNramp6	BACTERIOCIDE EFFECT 1	homologues of mammalian Nramp1 gene			7	L41217, S81897. D15268. integral membrane protein. Q0D7E4. TO:0006059: cadmium concentration. TO:0006049: iron concentration. TO:0006053: zinc concentration. TO:0006054: arsenic concentration. OsNramp6 in Liang et al. 2014. LOC_Os07g15460. arsenic transport. NRAMP transporter (Fe/Mn/Cd/As transport).	 Tolerance and resistance - Stress tolerance	Os07g0258400	LOC_Os07g15460.2, LOC_Os07g15460.1				GO:0046686 - response to cadmium ion, GO:0005381 - iron ion transmembrane transporter activity, GO:0015691 - cadmium ion transport, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0055072 - iron ion homeostasis, GO:0046685 - response to arsenic		PO:0009005 - root , PO:0000252 - endodermis , PO:0006203 - pericycle 
6244	NRAMP2	OsNramp2, OsNRAMP2	BACTERIOCIDE EFFECT 2	homologues of mammalian Nramp2 gene			3	L81152. integral membrane protein. Q10Q65.	 Tolerance and resistance - Stress tolerance	Os03g0208500	LOC_Os03g11010.1				GO:0006811 - ion transport, GO:0005215 - transporter activity, GO:0030001 - metal ion transport, GO:0016021 - integral to membrane		PO:0025034 - leaf 
6245	NRAMP3	OsNramp3, OsNRAMP3	BACTERIOCIDE EFFECT 3	homologues of mammalian Nramp3 gene, Integral membrane protein OsNramp3			6	U60767. integral membrane protein. Q653V6.	 Tolerance and resistance - Stress tolerance	Os06g0676000	LOC_Os06g46310.3, LOC_Os06g46310.2, LOC_Os06g46310.1				GO:0055072 - iron ion homeostasis, GO:0030001 - metal ion transport, GO:0016020 - membrane, GO:0005215 - transporter activity, GO:0016021 - integral to membrane		PO:0025034 - leaf 
6246	NRT1	OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9	NITRATE TRANSPORTER 1	nitrate transporter gene 1, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.9	NITRATE TRANSPORTER 1		3	AF140606. TO:0020094: nitrate content. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0235900	LOC_Os03g13274.1, LOC_Os03g13274.2, LOC_Os03g13274.3, LOC_Os03g13274.4				GO:0042594 - response to starvation, GO:0015103 - inorganic anion transmembrane transporter activity, GO:0005215 - transporter activity, GO:0016020 - membrane, GO:0010167 - response to nitrate		PO:0009005 - root 
6247	NRT2.1	OsNRT2.1, OsNRT2.2	HIGH AFFINITY NITRATE TRANSPORTER	high-affinity nitrate transporter 2.1	HIGH AFFINITY NITRATE TRANSPORTER		2	AB008519. TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. OsNRT2.2 in Plett et al. 2010.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0112100 	LOC_Os02g02170.1				GO:0009414 - response to water deprivation, GO:0009415 - response to water, GO:0016021 - integral to membrane, GO:0015112 - nitrate transmembrane transporter activity, GO:0009693 - ethylene biosynthetic process, GO:0010167 - response to nitrate, GO:0010618 - aerenchyma formation, GO:0055085 - transmembrane transport	TO:0000276 - drought tolerance, TO:0000237 - water stress trait, TO:0000396 - grain yield, TO:0000457 - total biomass yield, TO:0000346 - tiller number	
6248	NRT2.2	OsNRT2.2, OsNRT2.1	HIGH AFFINITY NITRATE TRANSPORTER	high-affinity nitrate transporter 2.2	HIGH AFFINITY NITRATE TRANSPORTER		2	LOC_Os02g02190. TO:0020098: nitrate sensitivity. OsNRT2.1 in Plett et al. 2010.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0112600	LOC_Os02g02190.1				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0015112 - nitrate transmembrane transporter activity, GO:0010167 - response to nitrate	TO:0000276 - drought tolerance	
6249	NRT2.3	OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5	HIGH AFFINITY NITRATE TRANSPORTER	high-affinity nitrate transporter 2.3	HIGH AFFINITY NITRATE TRANSPORTER		1	OsNRT2;1 and OsNRT2;3a in Yan et al. 2014. OsNRT2;3a in Liu et al. 2014. OsNRT2;1 in Yang et al. 2014. OsNRT2.5 in Plett et al. 2010. TO:0020096: mineral and ion transport trait. TO:0000952: stem weight.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0704100 	LOC_Os01g50820.1				GO:0009414 - response to water deprivation, GO:0055085 - transmembrane transport, GO:0015112 - nitrate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009268 - response to pH, GO:0019740 - nitrogen utilization, GO:0006885 - regulation of pH	TO:0000276 - drought tolerance, TO:0000396 - grain yield, TO:0006032 - panicle size, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000445 - seed number, TO:0000180 - spikelet fertility, TO:0000511 - phosphorus uptake	PO:0005417 - phloem 
6250	NRT2.4	OsNRT2.4	HIGH AFFINITY NITRATE TRANSPORTER	high-affinity nitrate transporter 2.4	HIGH AFFINITY NITRATE TRANSPORTER		1	TO:0020098: nitrate sensitivity. TO:0020094: nitrate content.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os01g0547600	LOC_Os01g36720.1				GO:0015112 - nitrate transmembrane transporter activity, GO:0060359 - response to ammonium ion, GO:0048367 - shoot development, GO:0010167 - response to nitrate, GO:0048527 - lateral root development, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000654 - shoot development trait, TO:0001013 - lateral root number, TO:0000163 - auxin sensitivity, TO:0001012 - lateral root length, TO:0000172 - jasmonic acid sensitivity	PO:0000016 - lateral root primordium , PO:0025205 - shoot system vascular system , PO:0009006 - shoot system 
6251	P5CS	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1	P5C SYNTHETASE	delta1-pyrroline-5-carboxylate synthetase, Delta-1-pyrroline-5-carboxylate synthetase, pyrroline-5-carboxylate synthetase, proline carboxylate synthase 1, Aldehyde dehydrogenase 18B1	P5C SYNTHETASE		5	EC=2.7.2.11 Glutamate 5-kinase, GK, Gamma-glutamyl kinase. EC=1.2.1.41 Gamma-glutamyl phosphate reductase,   GPR, Glutamate-5-semialdehyde dehydrogenase, Glutamyl-gamma-semialdehyde dehydrogenase. O04226. AY574031. D49714. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0455500	LOC_Os05g38150.2, LOC_Os05g38150.1				GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity, GO:0009651 - response to salt stress, GO:0004349 - glutamate 5-kinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0006561 - proline biosynthetic process, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0055114 - oxidation reduction	TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006002 - proline content	
6252	PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1	PHENYLALANINE AMMONIA-LYASE 1	phenylalanine ammonia-lyase, phenylalanine ammonia lyase 1, Phe ammonia lyase 1	PHENYLALANINE AMMONIA-LYASE 1		2	LOC_Os02g41630. EC=4.3.1.24 P14717. X16099. GP-1 (genomic) and CP-1 (cDNA) in Minami et al. 1989. D48330. PAL2 in Xie el al. 2011. EF576408. GO:1901698: response to nitrogen compound.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0626100	LOC_Os02g41630.2	GR:0060593			GO:0009058 - biosynthetic process, GO:0009698 - phenylpropanoid metabolic process, GO:0016211 - ammonia ligase activity, GO:0005737 - cytoplasm, GO:0006559 - L-phenylalanine catabolic process, GO:0009807 - lignan biosynthetic process, GO:0009411 - response to UV, GO:0009697 - salicylic acid biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009809 - lignin biosynthetic process, GO:0046688 - response to copper ion, GO:0016841 - ammonia-lyase activity, GO:0010266 - response to vitamin B1, GO:0009834 - secondary cell wall biogenesis, GO:0002237 - response to molecule of bacterial origin, GO:0009642 - response to light intensity, GO:0009635 - response to herbicide	TO:0000074 - blast disease, TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000624 - allelopathic effect, TO:0000160 - UV light sensitivity, TO:0000021 - copper sensitivity, TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0000460 - light intensity sensitivity, TO:0000058 - herbicide sensitivity	
6253	PHB1	OsPHB1	HOMOLOGOUS TO PROHIBITIN	homologous to prohibitin	PROHIBITIN HOMOLOGUE				 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0005739 - mitochondrion		
6254	PIN	OsPIN	PROTEINASE INHIBITOR	proteinase inhibitor	PROTEINASE INHIBITOR				 Biochemical character						GO:0004857 - enzyme inhibitor activity		
6255	PIP1A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5	PLASMA MEMBRANE INTRINSIC PROTEIN 1A	Aquaporin PIP1-1, Plasma membrane intrinsic protein 1-1, Plasma membrane intrinsic protein 1a, Water channel protein RWC1, plasma membrane intrinsic protein 1-5	PLASMA MEMBRANE INTRINSIC PROTEIN 1A		2	AP005108. Q6EU94. AB009665. BE607367, AJ224327. CK046160. LOC_Os02g44630. Water channel protein (WCP-I). TO:0000905: seed yield. PIP1-5 in Sharma et al. 2015. one of the predicted targets for Osa-miR820.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0666200	LOC_Os02g44630.3, LOC_Os02g44630.2, LOC_Os02g44630.1				GO:0009845 - seed germination, GO:0055085 - transmembrane transport, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005215 - transporter activity, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus	TO:0000434 - root activity, TO:0000276 - drought tolerance, TO:0000430 - germination rate, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage 
6256	PIP2A	OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1	PLASMA MEMBRANE INTRINSIC PROTEIN 2A	Probable aquaporin PIP2-1, Plasma membrane intrinsic protein 2-1, Plasma membrane intrinsic protein 2a	PLASMA MEMBRANE INTRINSIC PROTEIN 2A		7	plasma membrane intrinsic protein. AP003802. Q8H5N9. AF062393. LOC_Os07g26690.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0448800	LOC_Os07g26690.2, LOC_Os07g26690.1				GO:0009414 - response to water deprivation, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000394 - drought related trait, TO:0000615 - abscisic acid sensitivity	
6257	PIPK1	OsPIPK1, PIP5K	PHOSPHATIDYLINOSITOL MONOPHOSPHATE KINASE 1	rice phosphatidylinositol monophosphate kinase1, Phosphatidylinositol-4-phosphate 5-kinase 1, 1-phosphatidylinositol-4-phosphate kinase, PtdIns(4)P-5-kinase, Diphosphoinositide kinase	PHOSPHATIDYLINOSITOL MONOPHOSPHATE KINASE 1		3	EC=2.7.1.68 Q6EX42.	 Biochemical character	Os03g0701800	LOC_Os03g49510.1				GO:0046488 - phosphatidylinositol metabolic process, GO:0030154 - cell differentiation, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity, GO:0005524 - ATP binding, GO:0009908 - flower development		
6259	PK7	OsPK7, OsPK07, OsCIPK12, CIPK12	PROTEIN KINASE 7	protein kinase 7, CBL-interacting protein kinase 12, CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 12	PROTEIN KINASE 7		1	EC=2.7.11.1 Q5JLS2. LOC_Os01g55450. AB011968.	 Biochemical character	Os01g0759400	LOC_Os01g55450.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction		
6262	PP1	OsPP1c	PROTEIN PHOSPHATASE 1	protein phosphatase 1 catalytic subunit	PROTEIN PHOSPHATASE 1				 Biochemical character						GO:0004721 - phosphoprotein phosphatase activity		
6263	PP2A-1	OsPP2A-1, PP2A1, OsPP88	PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT 1	protein phosphatase 2A catalytic subunit 1, Serine/threonine-protein phosphatase PP2A-1 catalytic subunit, Protein phosphatase 88	PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNITS		6	EC=3.1.3.16 AF097182. A2YEB4(indica), Q0DBD3(japonica). LOC_Os06g37660.	 Biochemical character	Os06g0574500	LOC_Os06g37660.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0030145 - manganese ion binding, GO:0005737 - cytoplasm, GO:0005506 - iron ion binding		
6264	PP2A-3	OsPP2A-3, PP2A3, OsPP20	PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT 3	protein phosphatase 2A catalytic subunit 3, Serine/threonine-protein phosphatase PP2A-3 catalytic subunit, Protein phosphatase 20	PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNITS		2	EC=3.1.3.16 AF159061. A2X2G3(indica), Q0E2S4(japonica). LOC_Os02g12580.	 Biochemical character	Os02g0217600	LOC_Os02g12580.1				GO:0005737 - cytoplasm, GO:0030145 - manganese ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005506 - iron ion binding		
6265	PP2A	OsPP2Ac	PROTEIN PHOSPHATASE 2A	protein phosphatase 2A catalytic subunits	PROTEIN PHOSPHATASE 2A				 Biochemical character						GO:0004721 - phosphoprotein phosphatase activity		
6266	PPC	Osppc-b	PHOSPHOENOLPYRUVATE CARBOXYLASE	phosphoenolpyruvate carboxylase, bacterial-type PEPC	PHOSPHOENOLPYRUVATE CARBOXYLASE			EC 4.1.1.31	 Biochemical character						GO:0008964 - phosphoenolpyruvate carboxylase activity		
6267	PPCK1	OsPPCK1	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE1	phosphoenol pyruvate carboxylase kinase1, phosphoenolpyruvate carboxylase kinase 1	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE1		2	GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0807000	LOC_Os02g56310.1				GO:0005516 - calmodulin binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0046777 - protein amino acid autophosphorylation, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009738 - abscisic acid mediated signaling, GO:0004683 - calmodulin-dependent protein kinase activity, GO:0018105 - peptidyl-serine phosphorylation, GO:0009931 - calcium-dependent protein serine/threonine kinase activity, GO:0005515 - protein binding	TO:0000276 - drought tolerance	
6268	PPCK2	OsPPCK2, OsPPCK2L, OsPPCK2S	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE2	phosphoenol pyruvate carboxylase kinase2, phosphoenolpyruvate carboxylase kinase 2	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE2		2	AB233452, AB233453.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0625300	LOC_Os02g41580.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005515 - protein binding, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0006468 - protein amino acid phosphorylation	TO:0000276 - drought tolerance	
6269	PPR1	OsPPR1, rPPR1	PENTATRICOPEPTIDE REPEAT PROTEIN 1	pentatricopeptide repeat protein gene-1	PENTATRICOPEPTIDE REPEAT PROTEIN 1		9	AY584749.	 Biochemical character	Os09g0413300 	LOC_Os09g24680.1				GO:0009658 - chloroplast organization		
6270	TPP1	OsTPP1, OsTPS	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 1	Trehalose-6-phosphate phosphatase 1, trehalose 6-P synthase	TREHALOSE-6-PHOSPHATE PHOSPHATASE 1		2	LOC_Os02g44230. AB120515. BAD12596. EU559275.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0661100	LOC_Os02g44230.1, LOC_Os02g44230.2, LOC_Os02g44235.1, LOC_Os02g44230.4, LOC_Os02g44230.3				GO:0009413 - response to flooding, GO:0005992 - trehalose biosynthetic process, GO:0009409 - response to cold, GO:0070415 - trehalose metabolism in response to cold stress, GO:0004805 - trehalose-phosphatase activity	TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0006003 - oligosaccharide content	
6274	PR1A	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1	PATHOGENESIS-RELATED GENE 1A	pathogenesis-related gene 1a, acidic PR protein 1, PR protein 1, acidic pathogenesis-related protein 1, pathogenesis-related 1a protein, Sperm Coating Protein	PATHOGENESIS-RELATED PROTEIN 1A		7	AJ278436. AU163470. AF251277. EF061246. GO:1901002: positive regulation of response to salt stress. GO:2000070: regulation of response to water deprivation. a member of SCP/TAPS (Sperm Coating Protein/Tpx-1/Ag5/PR-1/Sc7) protein family. OsPR1 in Kaur et al. 217.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0129200	LOC_Os07g03710.1				GO:0009751 - response to salicylic acid stimulus, GO:0006950 - response to stress, GO:0006952 - defense response, GO:0005576 - extracellular region, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0080134 - regulation of response to stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold	TO:0000175 - bacterial blight disease resistance, TO:0000031 - silicon sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	
6277	PR1B	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1	PATHOGENESIS-RELATED GENE 1B	pathogenesis-related gene 1b, PR1 basic, Pathogenesis-related protein class 1 basic gene, basic PR protein 1, Pathogenesis-related protein class 1, pathogenesis-related 1 protein	PATHOGENESIS-RELATED PROTEIN 1B		1	U89895. BF889437. EF061247. PR1 in Yin et al. 2000, Qin et al. 2018, Campbell & Ronald 2005, Xu and He 2007, Hou et al. 2014, Zhou et al. 2017.	 Tolerance and resistance - Disease resistance	Os01g0382000	LOC_Os01g28450.1				GO:0005576 - extracellular region, GO:0006950 - response to stress, GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	
6280	PR4	OsPR4, OsPR4a, PR4a, OsPR-4	PATHOGENESIS-RELATED GENE 4	pathogenesis-related gene 4, pathogenesis-related type 4, pathogenesis-related protein 4a, PR protein 4a	PATHOGENESIS-RELATED PROTEIN 4		11	AY050642.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0592200	LOC_Os11g37970.1				GO:0006950 - response to stress, GO:0042742 - defense response to bacterium, GO:0080027 - response to herbivore, GO:0006952 - defense response, GO:0009615 - response to virus, GO:0009627 - systemic acquired resistance, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0009817 - defense response to fungus, incompatible interaction		
6284	PTF1	OsPTF1, OsbHLH096	PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1	Pi starvation-induced transcription factor-1, bHLH transcription factor PTF1, basic helix-loop-helix protein 096	PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1		6	bHLH transcription factor. AY238991. a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os06g09370.	 Tolerance and resistance - Stress tolerance	Os06g0193400 	LOC_Os06g09370.3, LOC_Os06g09370.2, LOC_Os06g09370.1				GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0030528 - transcription regulator activity, GO:0009628 - response to abiotic stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0045449 - regulation of transcription	TO:0000168 - abiotic stress trait	
6285	RAA1	OsRAA1	ROOT ARCHITECTURE ASSOCIATED 1	root architecture associated-1			1	LOC_Os01g15340. AY659938. Q9LGE3. GO:2000280: regulation of root development.	 Character as QTL - Root activity	Os01g0257300	LOC_Os01g15340.1				GO:0048364 - root development, GO:0005634 - nucleus, GO:0009629 - response to gravity, GO:0005737 - cytoplasm, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009911 - positive regulation of flower development, GO:0045841 - negative regulation of mitotic metaphase/anaphase transition, GO:0005525 - GTP binding	TO:0000656 - root development trait	PO:0007520 - root development stage 
6290	RAC3	OsRac3	RAC/ROP-TYPE GTPASE 3	small GTP-binding protein 3, Rac-like GTP-binding protein 3	RAC/ROP-TYPE GTPASE 3		2	AB029510. Q6Z808.	 Biochemical character	Os02g0742200	LOC_Os02g50860.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005737 - cytoplasm, GO:0019898 - extrinsic to membrane, GO:0005525 - GTP binding, GO:0006952 - defense response	TO:0000112 - disease resistance	PO:0009066 - anther 
6291	RAC5	Osrac5, OsRac5, RACD, OsRacD, OsRACD	RAC/ROP-TYPE GTPASE 5	small GTP-binding protein 5, Rac-like GTP-binding protein 5, GTPase protein RacD	RAC/ROP-TYPE GTPASE 5		2	Q6EP31. AF329814. small GTP-binding protein. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0834000	LOC_Os02g58730.2, LOC_Os02g58730.1				GO:0019898 - extrinsic to membrane, GO:0050832 - defense response to fungus, GO:0005525 - GTP binding, GO:0005737 - cytoplasm, GO:0007264 - small GTPase mediated signal transduction, GO:0009416 - response to light stimulus, GO:0007602 - phototransduction	TO:0000009 - genic male sterility-photoperiod sensitive, TO:0000074 - blast disease	PO:0009066 - anther 
6292	RAC7	OSRAC7, OsRac7, ROP5, OsRop5	RAC/ROP-TYPE GTPASE 7	small GTP-binding protein 7, Rac-like GTP-binding protein 7, GTPase protein ROP5	RAC/ROP-TYPE GTPASE 7		2	Q6Z7L8. AF376055.	 Biochemical character	Os02g0312600	LOC_Os02g20850.1				GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0019898 - extrinsic to membrane, GO:0005737 - cytoplasm		PO:0009066 - anther 
6293	RAC6	OsRacB, RacB, OsRac6	RAC/ROP-TYPE GTPASE 6	Rac-like GTP-binding protein 6, GTPase protein RacB	RAC/ROP-TYPE GTPASE 6		2	Q6ZHA3. AY579208.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0120800	LOC_Os02g02840.1				GO:0005737 - cytoplasm, GO:0007264 - small GTPase mediated signal transduction, GO:0019898 - extrinsic to membrane, GO:0005525 - GTP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
6295	SPL	OsSPL	RICE SQUAMOSA PROMOTER-BINDING-LIKE	rice SQUAMOSA promoter-binding-like, SQUAMOSA promoter-binding-like transcription factor	SQUAMOSA PROMOTER-BINDING-LIKE TRANSCRIPTION FACTOR				 Other						GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
6296	SPY	OsSPY	SPINDLY	Spindly, Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	PROBABLE UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY		8	O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE. O-linked N-acetylglucosamine transferase. EC=2.4.1.- Q6YZI0. PO:0000230; inflorescence meristem ; PO:0020142; stem internode ; PO:0009049; inflorescence. RO:0007048; 04-stem elongation stage.	 Reproductive organ - Inflorescence	Os08g0559300	LOC_Os08g44510.1	GR:0080023			GO:0005634 - nucleus, GO:0005488 - binding, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009739 - response to gibberellin stimulus, GO:0009740 - gibberellic acid mediated signaling	TO:0000201 - panicle color, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000207 - plant height	PO:0000230 - inflorescence meristem , PO:0009049 - inflorescence , PO:0020142 - stem internode 
6297	SUT1	OsSUT1, OsSUT2	SUCROSE TRANSPORTER 1	Sucrose transporter-1, Sucrose transporter 1	SUCROSE TRANSPORTER 1	SUT1-1, SUT1-2	3	SUT1-2 is an allele encoding rice sucrose transporter 1, and causes good grain filling in extra-heavy panicle type (for example in a cultivar Milyang 23). AF280050. AB551389. D87819. Q9LKH3. Q10R54. sucrose transporter. PO:0000003; whole plant. OsSUT2 in Lu et al. 2017.	 Biochemical character,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os03g0170900	LOC_Os03g07480.4, LOC_Os03g07480.3, LOC_Os03g07480.2, LOC_Os03g07480.1	GR:0061315			GO:0005985 - sucrose metabolic process, GO:0042950 - salicin transmembrane transporter activity, GO:0008515 - sucrose transmembrane transporter activity, GO:0009846 - pollen germination, GO:0005887 - integral to plasma membrane, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0015770 - sucrose transport, GO:0015293 - symporter activity, GO:0008519 - ammonium transmembrane transporter activity, GO:0005364 - maltose:hydrogen symporter activity, GO:0008506 - sucrose:hydrogen symporter activity	TO:0002661 - seed maturation, TO:0000333 - sugar content, TO:0000401 - plant growth hormone sensitivity, TO:0000207 - plant height	PO:0000003 - whole plant 
6298	TATC	OsTATC, OsTatC, TatC	SEC-INDEPENDENT PROTEIN TRANSLOCASE SUBUNIT C	homologue of E. coli TATC, Sec-independent protein translocase subunit C	SEC-INDEPENDENT PROTEIN TRANSLOCASE SUBUNIT C		1	AB050885. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007142; 1-4 leaf stage. LOC_Os01g31680. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Tolerance and resistance - Stress tolerance	Os01g0501700	LOC_Os01g31680.2, LOC_Os01g31680.1	GR:0101258			GO:0009306 - protein secretion, GO:0009536 - plastid, GO:0016020 - membrane, GO:0008565 - protein transporter activity, GO:0009688 - abscisic acid biosynthetic process, GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity	TO:0000293 - chlorophyll-a content, TO:0000394 - drought related trait, TO:0000495 - chlorophyll content, TO:0000478 - abscisic acid concentration, TO:0000295 - chlorophyll-b content	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
6299	TMK	OsTMK	TRANSMEMBRANE KINASE	transmembrane kinase	TRANSMEMBRANE KINASE		3		 Biochemical character	Os03g0717000	LOC_Os03g50810.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009739 - response to gibberellin stimulus		
6300	TUBA1	OsTubA1, TubA1, OS-TubA3, TubA3	TUBULIN ALPHA-1 CHAIN	Tubulin alpha-1 chain, Tubulin alpha-1	TUBULIN ALPHA-1 CHAIN		7	X91808. P28752. OS-TubA3 in Qin et al. 1997.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os07g0574800	LOC_Os07g38730.1				GO:0003924 - GTPase activity, GO:0005200 - structural constituent of cytoskeleton, GO:0005525 - GTP binding, GO:0051258 - protein polymerization, GO:0009845 - seed germination, GO:0005198 - structural molecule activity, GO:0009266 - response to temperature stimulus, GO:0007018 - microtubule-based movement, GO:0005737 - cytoplasm, GO:0007017 - microtubule-based process, GO:0016049 - cell growth, GO:0005874 - microtubule, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000432 - temperature response trait	PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
6301	WAK	OsWAK	WALL-ASSOCIATED KINASE GENE	wall-associated kinase gene	WALL-ASSOCIATED KINASE				 Biochemical character						GO:0004674 - protein serine/threonine kinase activity		
6303	WRKY51	OsWRKY51	WRKY GENE 51	Rice WRKY gene51	TRANSCRIPTION FACTOR WRKY51		4	LOC_Os04g21950. BK005054. WRKY50 in Qiu et al. 2004. WRKY42 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY40 in Wu et al. (2005). HQ858832. GO:1900426: positive regulation of defense response to bacterium. 	 Tolerance and resistance - Disease resistance	Os04g0287400	LOC_Os04g21950.1				GO:0005634 - nucleus, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006999 - nuclear pore organization	TO:0000175 - bacterial blight disease resistance	
6304	WRKY71	OsWRKY71, WRKY-71	WRKY GENE 71	Rice WRKY gene71, Rice WRKY gene 71, Transcription factor WRKY71	TRANSCRIPTION FACTOR WRKY71		2	LOC_Os02g08440. AY676927, BK005074. AY541677. Q6QHD1. AB190817. GRO:0007047; 02-seedling ; GRO:0007142; 1-4 leaf stage ; GRO:0007045; 09-mature grain stage. WRKY18 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY25 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0181300	LOC_Os02g08440.4, LOC_Os02g08440.3, LOC_Os02g08440.2, LOC_Os02g08440.1	GR:0080004			GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006952 - defense response, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0043565 - sequence-specific DNA binding, GO:0045449 - regulation of transcription, GO:0009685 - gibberellin metabolic process, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	PO:0005360 - aleurone layer , PO:0006339 - juvenile vascular leaf 
6310	YAB1	OsYAB1, FIL1, osFIL1	YABBY1	YABBY1 gene, YABBY 1, OsYABBY1, Os YABBY1, FILAMENTOUS FLOWER 1, Protein YABBY 1, Protein FILAMENTOUS FLOWER 1, FIL homolog 1	PROTEIN YABBY 1		7	Q7XIM7. AF098752. PO:0004705; stamen primordium ; PO:0004703; carpel primordium. GRO:0007178; ovule stage OV0 ; GRO:0007209; stamen stage ST0 ; GRO:0007157; panicle development.	 Other	Os07g0160100	LOC_Os07g06620.4, LOC_Os07g06620.3, LOC_Os07g06620.2, LOC_Os07g06620.1	GR:0080014			GO:0008270 - zinc ion binding, GO:0048833 - specification of floral organ number, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0003677 - DNA binding	TO:0000223 - pistil anatomy and morphology trait, TO:0000225 - stamen number	PO:0004703 - carpel primordium , PO:0004705 - stamen primordium 
6311	ZIP1	OsZIP1	ZINC TRANSPORTER 1	zinc transporter 1, Zrt-Irt-like protein 1, Zinc-regulated transporter 1	ZINC TRANSPORTER 1		1	AY302058. PO:0005020; vascular bundle ; PO:0000036; leaf vascular system ; PO:0009005; root ; PO:0009025; leaf. GRO:0007139; A-vegetative stage. TO:0006059: cadmium content trait,	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0972200	LOC_Os01g74110.1	GR:0101281			GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0010043 - response to zinc ion, GO:0006829 - zinc ion transport, GO:0005385 - zinc ion transmembrane transporter activity		PO:0000036 - leaf vascular system , PO:0005020 - vascular bundle , PO:0009005 - root , PO:0009025 - vascular leaf 
6312	ZIP2	OsZIP2, OsZIP11, ZIP11	ZINC TRANSPORTER 2	zinc transporter 2, Zrt-Irt-like protein 2, Zinc-regulated transporter 2, zinc transporter 11, Zrt-Irt-like protein 11	ZINC TRANSPORTER 2		3	LOC_Os03g29850. AY302059. Q852F6. OsZIP11 in Narayan et al. 2007.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0411800	LOC_Os03g29850.1	GR:0101282			GO:0006829 - zinc ion transport, GO:0046873 - metal ion transmembrane transporter activity, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005739 - mitochondrion, GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport		
6314	OVC	Ovc, Ovc(t)	OVICIDAL	Ovicidal effect to whitebacked planthopper			6	Ovicidal effect on white-backed planthopper. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060591			GO:0009625 - response to insect	TO:0000205 - white-backed planthopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
6317	PHYB	phyB, PHYB1, OsPHYB, OsphyB	PHYTOCHROME B	PhytochromeB, Phytochrome B	PHYTOCHROME B	osphyB, phyB-1, phyB-2, phyB-3, phyB-4, phyB-5, phyb	3	LOC_Os03g19590. A2XFW2 (indica), Q10MG9 (japonica). AB109892 (Japonica). JN594127-JN594211 (O. sativa and other wild rice species). a rice ortholog of Arabidopsis gene for circadian clock component.	 Biochemical character,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0309200	LOC_Os03g19590.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0048573 - photoperiodism, flowering, GO:0042744 - hydrogen peroxide catabolic process, GO:0009414 - response to water deprivation, GO:0017006 - protein-tetrapyrrole linkage, GO:0006350 - transcription, GO:0007623 - circadian rhythm, GO:0000155 - two-component sensor activity, GO:0007600 - sensory perception, GO:0018298 - protein-chromophore linkage, GO:0042803 - protein homodimerization activity, GO:0009585 - red, far-red light phototransduction, GO:0005524 - ATP binding, GO:0008020 - G-protein coupled photoreceptor activity, GO:0016020 - membrane, GO:0018106 - peptidyl-histidine phosphorylation	TO:0000566 - stomatal frequency, TO:0000605 - hydrogen peroxide content, TO:0000495 - chlorophyll content, TO:0000137 - days to heading, TO:0000298 - chlorophyll ratio, TO:0000326 - leaf color, TO:0002616 - flowering time, TO:0000276 - drought tolerance	
6319	PHYC	OsPHYC, OsPHYCa, OsPHYCb	PHYTOCHROME C	PhytochromeC, Phytochrome C	PHYTOCHROME C	phyC-1	3	A2XM23(indica), Q10CQ8(japonica). AB018442(Japonica). U61207. a rice ortholog of Arabidopsis gene for circadian clock component.	 Biochemical character	Os03g0752100	LOC_Os03g54084.1				GO:0018298 - protein-chromophore linkage, GO:0007623 - circadian rhythm, GO:0000155 - two-component sensor activity, GO:0006350 - transcription, GO:0009585 - red, far-red light phototransduction, GO:0017006 - protein-tetrapyrrole linkage, GO:0005524 - ATP binding, GO:0008020 - G-protein coupled photoreceptor activity, GO:0018106 - peptidyl-histidine phosphorylation, GO:0042803 - protein homodimerization activity, GO:0007600 - sensory perception, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016020 - membrane		
6322	PI2 -> see PIZ	Pi2(t)	PYRICULARIA ORYZAE RESISTANCE 2	Pyricularia oryzae resistance 2, Magnaporthe grisea resistance 2, Blast resistance 2			6		 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6325	PI36	Pi36(t), Pi36	PYRICULARIA ORYZAE RESISTANCE	Pyricularia oryzae resistance 36, Magnaporthe grisea resistance 36, Blast resistance 36	NUCLEOTIDE-BINDING SITE LEUCINE-RICH REPEAT PROTEIN		8	LOC_Os08g05440. DQ900896(O. sativa Indica Group, Kasalath). Original line is Q61. Map position (21.6-25.2 cM). ABI64281	 Tolerance and resistance - Disease resistance	Os08g0150150					GO:0043531 - ADP binding, GO:0009620 - response to fungus, GO:0006952 - defense response		
6326	PI37	Pi37(t), Pi37	PYRICULARIA ORYZAE RESISTANCE 37	Pyricularia oryzae resistance 37, Magnaporthe grisea resistance 37, Blast resistance 37	NUCLEOTIDE-BINDING SITE LEUCINE-RICH REPEAT PROTEIN		1	Pi37 encodes a nucleotide binding site leucine-rich repeat protein. mapped between RM319 and RM302, DQ923494. LOC_Os01g57310. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os01g0781700	LOC_Os01g57310.2, LOC_Os01g57310.1				GO:0009620 - response to fungus, GO:0043531 - ADP binding, GO:0006952 - defense response		
6329	PICO39	PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)	PYRICULARIA ORYZAE RESISTANCE CO39	Pyricularia oryzae resistance CO39(Indica), Magnaporthe grisea resistance CO39, Blast resistance CO39			11		 Tolerance and resistance - Disease resistance					49.1	GO:0009620 - response to fungus		
6330	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)	PYRICULARIA ORYZAE RESISTANCE D1	Pyricularia oryzae resistance d1, Magnaporthe grisea resistance d1, Blast resistance d1			2	Original line is Digu (Indica). Map position (87.5-89.9 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6332	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t)	PYRICULARIA ORYZAE RESISTANCE D2	Pyricularia oryzae resistance d2, Magnaporthe grisea resistance d2, Blast resistance d2, PI-D2 protein kinase	BETA-LECTIN RECEPTOR KINASE		6	Pi-d2 encodes a serine-threonine-RLK membrane-spanning protein. Pi-d2 contains a predicted extracellular bulb-type mannose specific binding lectin (B-lectin) domain. Original line is Digu (Indica). FJ915121.	 Tolerance and resistance - Disease resistance	Os06g0494100	LOC_Os06g29810.3, LOC_Os06g29810.2, LOC_Os06g29810.1			65.8	GO:0005524 - ATP binding, GO:0009620 - response to fungus, GO:0004674 - protein serine/threonine kinase activity		
6334	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh	PYRICULARIA ORYZAE RESISTANCE KH	Pyricularia oryzae resistance, Magnaporthe grisea resistance kh, Blast resistance kh			11	Pi-kh is one of the alleles in the Pi-k locus. Original line is HR-22 and K3 (Indica) for Pi-kh and Taipei 309 (Indica) for Pi54. LOC_Os11g42010. EF532592 (Peiai64). AY914077. HE589445 (Oryza rhizomatis pi54). Pi54rh is the Oryza rhizomatis ortholog of Oryza sativa Pi54. Pi-kh was renamed Pi54, because Pi-kh is ~2.5Mbp away from the Pik Locus (Sharma et al. 2010). GU258499- GU258508.	 Tolerance and resistance - Disease resistance	Os11g0639100	LOC_Os11g42010.1			101.9	GO:0009620 - response to fungus		
6336	PIY1	Pi-y1(t), Pi-y(t), Piy1(t)	PYRICULARIA GRISEA RESISTANCE Y 1	Pyricularia oryzae resistance y1, Magnaporthe grisea resistance y1, Blast resistance y1			2	Original line is Yanxian No.1 (Indica).  Map position (153.2-154.1 cM). Pi-y(t) in Huang 2005 and Pi-y1(t) in Lei et al. 2005. The results indicated that the two gene Pi-y1(t) and Pi-y2(t) could be one same gene in that their positions is too close, designated tentatively as Pi-y(t) (Lei et al. 2005).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6342	PPCK3	OsPPCK3	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE 3	phosphoenol pyruvate carboxylase kinase 3	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE3			AB234234.	 Biochemical character						GO:0005515 - protein binding, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6343	PR1	OsPR1	PATHOGEN RESPONSE GENE 1	Pathogen response genes	PATHOGEN RESPONSE PROTEIN 1 				 Tolerance and resistance - Disease resistance						GO:0006950 - response to stress, GO:0006952 - defense response		
6344	PSR1	PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR	PROMOTOR OF SHOOT REGENERATION 1	"Promotor of shoot regeneration-1, ferredoxin-nitrite reductase, \"Ferredoxin--nitrite reductase, chloroplastic\""	FERREDOXIN-NITRITE REDUCTASE		1	LOC_Os01g25484. D50556. Q42997. EC=1.7.7.1 OsNIR1 in Wang et al. 2018.	 Biochemical character,  Character as QTL	Os01g0357100	LOC_Os01g25484.3, LOC_Os01g25484.2, LOC_Os01g25484.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0022900 - electron transport chain, GO:0006810 - transport, GO:0009507 - chloroplast, GO:0042128 - nitrate assimilation, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0048307 - ferredoxin-nitrite reductase activity		
6346	qCL-1	qCL-1															
6347	qCL-7	qCL-7															
6348	qCT-1	qCT-1															
6349	qCT-11	qCT-11															
6350	qCT-7	qCT-7															
6351	qCTS12	qCTS12															
6352	-	qDTH (qDTH-1, qDTH-7)															
6354	qGpp	qGpp	GRAINS PER PANICLE	grains per panicle													
6355	qHd	qHd	HEADING DATE	heading date					 Reproductive organ - Heading date								
6359	qIC	qIc															
6360	qIw	qIw															
6361	qLb-3, qLb-11	qLb-3, qLb-11	LEAF BRONZING.	leaf bronzing.													
6362	qOVA4	qOVA4, qOVA5-2, qOVA6 (?)	OVICIDAL RESPONSE TO THE WBPH BY WATERY LESION 	ovicidal response to the WBPH by watery lesion （液浸化）					 Tolerance and resistance - Insect resistance,  unclassified						GO:0009625 - response to insect		
6363	qPBNm	qPBNm	PANICLE SIZE	panicle size													
6364	qPh	qPh	PLANT HEIGHT	plant height					 Vegetative organ - Culm								
6365	qRCT3	qRCT3	COLD TOLERANCE	cold tolerance					 Tolerance and resistance - Stress tolerance								
6366	qRCT6a	qRCT6a	COLD TOLERANCE	cold tolerance					 Tolerance and resistance - Stress tolerance								
6367	qRCT6b	qRCT6b	COLD TOLERANCE	cold tolerance					 Tolerance and resistance - Stress tolerance								
6368	qRCT7	qRCT7	COLD TOLERANCE	cold tolerance					 Tolerance and resistance - Stress tolerance								
6369	qSB (qSB-3,qSB-12)	qSB (qSB-3,qSB-12)															
6370	qSBN	qSBN															
6371	qSc	qSc															
6372	qSDT12-2	qSDT12-2															
6373	qSDT2-1	qSDT2-1															
6374	qSH1	qSH1, qsh1, qSH-1	Shattering (QTL)-1	QTL of seed shattering in chromosome 1		qSH1-A, qSH1-W, qSH1-T, qSH1-N	1	Nipponbare allele. EU999788-EU999861 (Oryza sativa and other wild rice species). a homeodomain gene. BEL1-type homeobox gene. AB071330-AB071333. AY886122-AY886152 and DQ374913-DQ374940  (O. sativa and other wild rice species, partial cds). one of the two rice REPLUMLESS orthologs.	 Seed - Physiological traits - Shattering	Os01g0848400	LOC_Os01g62920.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000473 - grain shattering	
6375	qSH11	qSH11	shattering (QTL)-11				11	Kasalath allele	 Seed - Physiological traits - Shattering								
6376	qSH12	qSH12	shattering (QTL)-12				12	Kasalath alleles	 Seed - Physiological traits - Shattering								
6377	qSH2	qSH2	shattering (QTL)-2 				2	Nipponbare allele	 Seed - Physiological traits - Shattering								
6378	qSH5	qSH5	Shattering (QTL)-5				5	Nipponbare allele. 	 Seed - Physiological traits - Shattering								
6379	qSNP	qSNP															
6380	-	qSpp:															
6381	qSv	qSv															
6382	-	qTIL-4, qTIL-7, qTIL-12, qNEI-12															
6383	RA1	Ra1	RA-LIKE GENE 1	Ra-like gene 1			4	R gene family.	 Coloration - Anthocyanin						GO:0009718 - anthocyanin biosynthetic process		
6384	RA8	OsBURP15, BURP15	ANTHER-SPECIFIC PROTEIN 8	BURP domain-containing protein 15, Anther-specific protein 8	ANTHER-SPECIFIC PROTEIN 8 		9	anther-specific gene. Q69QR8.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0480900	LOC_Os09g30320.1				GO:0009555 - pollen development		
6385	RAB16A	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A	RESPONSIVE TO ABA GENE 16A	RAB(responsive to ABA) gene 16A, RAB gene 16A, late embryogenesis abundant protein 29, responsive to ABA protein 21	RAB16A PROTEIN		11	Y00842. A2ZDX9. Q2R4Z4. LEA protein. Rab21 (OsRAB21) in Asano et al. 2011, Kim et al. 2014, Hong et al. 2016, Tang et al. 2016, Lou et al. 2017, Chang et al. 2017, Fu et al. 2018, Xiong et al. 2018, Huang et al. 2018.	 Tolerance and resistance - Stress tolerance,  Other	 Os11g0454300	LOC_Os11g26790.1				GO:0006950 - response to stress, GO:0009415 - response to water, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
6389	RB2	Rb2	RB-LIKE GENE 2	Rb-like gene 2				R gene family.	 Coloration - Anthocyanin						GO:0030528 - transcription regulator activity, GO:0005634 - nucleus, GO:0005739 - mitochondrion, GO:0009812 - flavonoid metabolic process, GO:0045449 - regulation of transcription		
6390	PIKM	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2	PYRICULARIA ORYZAE RESISTANCE KM	Pyricularia oryzae resistance KM, Magnaporthe grisea resistance km, Blast resistance km			11	Pyricularia oryzae resistance. Original line is Minehikari (Japonica). Map position (115.1-117.0 cM). Pi-km is one of the alleles in the Pi-k locus. AB462324(Pikm1), AB462325(Pikm2), AB462256 (Genomic DNA). Pikm-specific resistance is conferred by cooperation of Pikm1-TS and Pikm2-TS (Ashikawa et al. 2008). AB510251-AB510347, AB519718-AB519769.	 Tolerance and resistance - Disease resistance	Os11g0689000/Os11g0689100					GO:0009620 - response to fungus, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0017111 - nucleoside-triphosphatase activity		
6391	PIKP	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2	PYRICULARIA ORYZAE RESISTANCE KP	Pyricularia oryzae resistance KP, Magnaporthe grisea resistance kp, Blast resistance kp			11	Pyricularia oryzae resistance. Original line is Pusur (the West Pakistani rice variety). Map position chr.11 (119.9-120.3 cM). Pi-kp is one of the alleles in the Pi-k locus. HM035360  (Pikp-1, Pikp-2). Both Pikp-1 and Pikp-2 are required for Pik-p function (Yuan et al. 2011).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus, GO:0005524 - ATP binding, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0043531 - ADP binding, GO:0017111 - nucleoside-triphosphatase activity, GO:0006952 - defense response		
6392	PIY2	Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t)	PYRICULARIA GRISEA RESISTANCE Y 2	Pyricularia oryzae resistance y2, Magnaporthe grisea resistance y2, Blast resistancey2			2	Original line is Yanxian No.1 (Indica). Map position (153.2-154.1 cM). Pi-y1(t) in Huang 2005 and Pi-y2(t) in Lei et al. 2005. The results indicated that the two gene Pi-y1(t) and Pi-y2(t) could be one same gene in that their positions is too close, designated tentatively as Pi-y(t) (Lei et al. 2005). 	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6393	PIZT	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9	PYRICULARIA ORYZAE RESISTANCE ZT	Pyricularia oryzae resistance zt, Magnaporthe grisea resistance zt, Blast resistance zt			6	Original line is Toride 1 (Japonica). DQ352040(Piz-t). The resistance gene in Toride 1 was allelic to Pi-z and designated as Pi-zt (Yokoo & Kiyosawa 1970). Pi2/9 homolog. LOC_Os06g17900. GO:0031342: negative regulation of cell killing. NLR receptor. Pi9 in  Yu et al. 2018.	 Tolerance and resistance - Disease resistance	Os06g0286700	LOC_Os06g17900.1			58.7	GO:0009620 - response to fungus, GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0001906 - cell killing	TO:0000074 - blast disease	
6394	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1	RUBISCO SMALL SUBUNIT	"Small subunits of Rubisco, \"Ribulose bisphosphate carboxylase small chain, chloroplastic\", RuBisCO small subunit, Ribulose bisphosphate carboxylase small chain C, RuBisCO small subunit C, RuBisCO small subunit 2, ribulose-1, 5-bisphosphate carboxylase/oxygenase small subunit, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 2, small subunit of ribulose-1, 5-bisphosphate carboxylase"	RUBISCO SMALL SUBUNIT		12	EC=4.1.1.39 A2Y205(indica). Q0INY7(japonica). D00643. X07515. L22155. OsrbcS1 in Park et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0274700	LOC_Os12g17600.2, LOC_Os12g17600.1				GO:0004497 - monooxygenase activity, GO:0009507 - chloroplast, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0009536 - plastid, GO:0019253 - reductive pentose-phosphate cycle, GO:0009853 - photorespiration, GO:0055114 - oxidation reduction	TO:0000011 - nitrogen sensitivity	
6401	RMS	RFcw, RFCW, Rfcw、Rf17	RETROGRADE-REGULATED MALE STERILITY	fertility restorer gene, restoration of fertility 17			4	Os04g0475900, AB481199,Suppressed expression of RETROGRADE-REGULATED MALE STERILITY restores pollen fertility in CW-type cytoplasmic male sterile rice plants	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0475900	LOC_Os04g40020.1				GO:0007275 - multicellular organismal development		
6404	RGP2	rgp2, OsRab11B1	RAS -RELATED GPT-BINDING PROTEIN2	ras -related GPT-binding protein2, Ras-related protein RGP2, GTP-binding regulatory protein RGP2, small GTP-binding protein OsRab11B1, GTP-binding protein OsRab11	RAS -RELATED GPT-BINDING PROTEIN2		5	Q40723. D15842 (replaced by C98278). OsRab11 in Sasaki et al. 1994.	 Biochemical character	Os05g0280200	LOC_Os05g20050.3, LOC_Os05g20050.2, LOC_Os05g20050.1				GO:0005768 - endosome, GO:0007264 - small GTPase mediated signal transduction, GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0003677 - DNA binding, GO:0005525 - GTP binding, GO:0009504 - cell plate		
6406	RIR1B	Rir1b, Rir1a, OsRALF-28, OsRALF28, RALF-28, RALF28	RICE PATHOGEN-RELATED PROTEIN	Rice pathogen-related protein, Rapid alkalization factor 28	RICE PATHOGEN-RELATED PROTEIN		10	Y14824, Y14825. LOC_Os10g41980.	 Tolerance and resistance - Disease resistance	Os10g0569400	LOC_Os10g41980.1				GO:0050832 - defense response to fungus		
6407	RIRES	RIRES	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
6408	RPL27-2	rpl27-2, rpl27, mtRPL27a, S27	MITOCHONDRIAL RIBOSOMAL PROTEIN L27	"mitochondrial ribosomal protein L27, F1 pollen sterility
gene S27"	MITOCHONDRIAL RIBOSOMAL PROTEIN L27		8	AB496673. AB496675 (Oryza glumipatula). AB576647  (Oryza nivara). A loss-of-function allele of F1 pollen sterility gene S27 in Oryza nivara, S27-nivs is composed of two tandem mitochondrial ribosomal protein L27 genes (mtRPL27a and mtRPL27b), both of which are inactive. S27-glums (O. glumaepatula allele). LOC_Os08g31219. Os08g0404250 (in Ncbi and UniProt). 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0404200	LOC_Os08g31219.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
6409	RPOC1	rpoC1, RPO beta', RPObeta'	RNA POLYMERASE C1	RNA polymeraseC1, RNA polymerase C1, DNA-directed RNA polymerase beta' chain, DNA-directed RNA polymerase subunit beta', Plastid-encoded RNA polymerase subunit beta', RNA polymerase subunit beta', RNA polymerase beta' chain, RNA polymerase beta' subunit-1, RNA polymerase beta' subunit, RNA polymerase beta' chain, RNA polymerase beta I subunit	RNA POLYMERASE C1		Pt	LOC_Osp1g00250. PEP. EC=2.7.7.6 P0C504. P0C505(indica). P0C506(japonica). AY522329 (isolate 93-11 chloroplast complete genome), AY522330: AAS46112: Nip037 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33987 (Japonica Group chloroplast genome). GU592207:ADD62825 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00250	GR:0100363			GO:0009507 - chloroplast, GO:0003899 - DNA-directed RNA polymerase activity, GO:0003677 - DNA binding, GO:0009536 - plastid, GO:0006350 - transcription, GO:0006351 - transcription, DNA-dependent		
6410	RPOC2	"rpoC2, RPO beta\", RPObeta\""	RNA POLYMERASE C2	RNA polymeraseC2, RNA polymerase C2, DNA-directed RNA polymerase beta'' chain, Plastid-encoded RNA polymerase subunit beta'', RNA polymerase subunit beta'', RNA polymerase beta'' chain, RNA polymerase beta' subunit-2, RNA polymerase beta'' subunit, Plastid- encoded RNA polymerase beta'' subunit, RNA polymerase beta'' chain, RNA polymerase beta II subunit	RNA POLYMERASE C2		Pt	LOC_Osp1g00260.PEP. EC=2.7.7.6 P0C507. P0C508(indica). P0C509(japonica). X15901: CAA33988 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00260	GR:0100364			GO:0006351 - transcription, DNA-dependent, GO:0006350 - transcription, GO:0009507 - chloroplast, GO:0003677 - DNA binding, GO:0009536 - plastid, GO:0003899 - DNA-directed RNA polymerase activity		
6411	RPS10	rps10	RIBOSOMAL PROTEIN S10	ribosomal protein S10	RIBOSOMAL PROTEIN S10				 Biochemical character						GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
6412	RPS4	rps4	S4 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME	S4 subunit of the mitochondrial ribosome, Ribosomal protein S4	S4 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME		Mt	LOC_Osm1g00400. AF055706. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99369 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19883 (Nipponbare complete mitochondrial genome). JN861111: AEZ03703, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03703 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19883 (DQ167400: AAZ99369) and JN861111: AEZ03703 (JF281153: AEZ03703) are in conflict.	 Biochemical character		LOC_Osm1g00400	GR:0100156			GO:0003723 - RNA binding, GO:0005739 - mitochondrion, GO:0003735 - structural constituent of ribosome, GO:0005763 - mitochondrial small ribosomal subunit, GO:0006412 - translation		
6413	RTS	RTS, RTS2	RICE TAPETUM SPECIFIC GENE	rice tapetum specific gene, rice tapetum-specific			1	U12171. PO:0006450; tapetum (sensu Poaceae). GRO:0007149; 5.1-early booting stage ; GRO:0007018; 4.01-pollen development.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  unclassified	Os01g0929600	LOC_Os01g70440.1	GR:0080006			GO:0048656 - tapetal layer formation, GO:0008565 - protein transporter activity, GO:0032940 - secretion by cell, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0048658 - tapetal layer development	TO:0000245 - pollen free, TO:0000111 - genetically engineered male sterility, TO:0000053 - pollen sterility	PO:0009071 - anther wall tapetum 
6414	RUBI3	rubi3, UBQ3	RICE POLYUBIQUITIN	rice polyubiquitin, poly-ubiquitin	RICE POLYUBIQUITIN		4	LOC_Os04g53620. AY954394. D12776. Q58G87. D10432(partial cds).	 Biochemical character	Os04g0628100	LOC_Os04g53620.4, LOC_Os04g53620.2, LOC_Os04g53620.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus		
6415	RUBQ2	rubq2	RICE UBIQUITIN2	rice ubiquitin2, polyubiquitin	RICE UBIQUITIN2			AF184280.	 Biochemical character						GO:0005634 - nucleus, GO:0005737 - cytoplasm		
6416	RUBQ2	rubq2, rub1, Ubq1, Rubq1, UBQ10	RICE UBIQUITIN2	rice ubiquitin2, ubiquitin 2, ubiquitin2, Ubiquitin 10	RICE UBIQUITIN2		2	AF484682. AY661468. X76064. U37687. UBQ10 in Jain et al. 2006 and Auler et al. 2017.	 Biochemical character	Os02g0161900	LOC_Os02g06640.4, LOC_Os02g06640.3, LOC_Os02g06640.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm		
6417	RWCA	RWCA	RELATIVE WATER CONTENT	relative water content					 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6418	RWCW	RWCW	RELATIVE WATER CONTENT	relative water content					 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6419	RYMV1	Rymv1, eIF(iso)4G	RESISTANCE TO YELLOW MOTTLE VIRUS-1	Rice yellow mottle virus resistant 1, Resistance to yellow mottle virus-1, eukaryotic translation initiation factor 4G	EUKARYOTIC TRANSLATION INITIATION FACTOR 4G		4	AM156957, AM156958, AM156959, AM156960, AM156961. PO:0000007; cultured leaf cell ; PO:0009025; leaf. GRO:0007139; A-vegetative stage. KC611153-KC611163 (O. sativa and wild rice species, partial cds).	 Tolerance and resistance - Disease resistance	Os04g0499300	LOC_Os04g42140.1	GR:0061359			GO:0009615 - response to virus, GO:0003743 - translation initiation factor activity, GO:0003677 - DNA binding, GO:0046739 - spread of virus in host, GO:0016281 - eukaryotic translation initiation factor 4F complex, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006417 - regulation of translation, GO:0016070 - RNA metabolic process	TO:0000164 - stress trait, TO:0000088 - rice yellow mottle virus resistance	PO:0000007 - leaf-derived cultured plant cell , PO:0009025 - vascular leaf 
6420	S29	S29(t)	HYBRID STERILITY 29	pollen killer gene					 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
6422	S32N	S32n(t)(=qSS5)	HYBRID STERILITY 32	hybrid sterility					 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
6423	S33	S33(t)	GAMETE ELIMINATOR33(T)	gamete eliminator33(t)					 Reproductive organ - Pollination, fertilization, fertility - Sterility						GO:0007275 - multicellular organismal development		
6425	S5	S5	WIDE COMPATIBILITY GENES	wide compatibility genes					 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009566 - fertilization, GO:0009856 - pollination		
6428	S5-N	S5-n	WIDE COMPATIBILITY GENES	wide compatibility genes			6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009856 - pollination, GO:0009566 - fertilization		
6429	S5-N	S5-n	WIDE COMPATIBILITY GENES	wide compatibility genes			6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009856 - pollination, GO:0009566 - fertilization		
6431	SODCC1	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1	CYTOSOLIC SUPEROXIDASE DISMUTASE	"cytosolic superoxidase dismutase, Superoxide dismutase [Cu-Zn] 1, Cytosolic Cu/Zn-siperoxide dismutase, rice Cu/Zn-SOD, Cu/Zn-SOD, Cytosolic Copper/Zinc-Superoxide Dismutase 1, \"Superoxide dismutase (Cu-Zn) 4, cytosolic\", Cu-dependent SOD 1.2"	CYTOSOLIC SUPEROXIDASE DISMUTASE		3	EC=1.15.1.1 L36320. L19435. D00999. D15875. A2XGP6(indica). Q0DRV6(japonica). PO:0009005; root ; PO:0005052; callus ; PO:0009025; leaf ; PO:0009010; seed. Superoxide dismutase (Cu-Zn) 4, cytosolic in Sasaki et al. 1994. SodCc2 in Zhang et al. 2014, Huang et al. 2018. OsSODA1 in Wang et al. 2014. LOC_Os03g22810. ROS-scavenging enzyme. GO:0072593: reactive oxygen species metabolic process. OsCu/Zn-SOD2 in Lou et al. 2017. Cu/ZnSOD1 in Huang et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0351500	LOC_Os03g22810.1	GR:0080033			GO:0006979 - response to oxidative stress, GO:0016209 - antioxidant activity, GO:0055114 - oxidation reduction, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0004784 - superoxide dismutase activity, GO:0005507 - copper ion binding, GO:0005829 - cytosol, GO:0000303 - response to superoxide, GO:0010039 - response to iron ion, GO:0010193 - response to ozone, GO:0005737 - cytoplasm, GO:0019430 - removal of superoxide radicals, GO:0006801 - superoxide metabolic process, GO:0008270 - zinc ion binding, GO:0046688 - response to copper ion	TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance	PO:0005052 - plant callus , PO:0009025 - vascular leaf , PO:0009010 - seed , PO:0009005 - root 
6439	qSH8	sh8	shattering(QTL)-8	shattering8			8		 Seed - Physiological traits - Shattering								
6440	SIP2A	Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1	SUBMERGENCE-INDUCED PROTEIN 2A	submergence-induced protein 2A, 1, 2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2, Aci-reductone dioxygenase 2, Submergence-induced protein 2A, acireductone dioxygenase 2, submergence-induced protein2A, aci-reductone-dioxygenase-like protein, Fe-deficiency-induced protein 1	SUBMERGENCE-INDUCED PROTEIN 2A		3	EC=1.13.-.- A2XCT8(indica), Q10RE5(japonica). AF068332, D40831, D47064. AY955841.	 Tolerance and resistance - Stress tolerance	Os03g0161800	LOC_Os03g06620.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity, GO:0046872 - metal ion binding, GO:0005506 - iron ion binding, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0019509 - methionine salvage, GO:0055114 - oxidation reduction, GO:0034224 - cellular response to zinc ion starvation, GO:0010106 - cellular response to iron ion starvation	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
6442	_	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1	_	SNAC1: stress-responsive NAC1, stress-responsive NAC 1, stress-induced transcription factor NAC1, NAC domain protein 9, NAC domain-containing protein 2, NAC domain-containing protein 33, NAC domain-containing protein 43, NAC domain-containing protein 44	_		3	LOC_Os03g60080. DQ394702. AY596808. KC610915-KC610927 (O. sativa and wild rice species, partial ads). OsNAC19 in Lin et al. 2007. SNAC1 and OsNAC19 in Nuruzzaman et al. 2013. NAC19 in Zhu et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0815100	LOC_Os03g60080.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0042538 - hyperosmotic salinity response, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000656 - root development trait, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity	
6443	SNB	AP2/EREBP#073, AP2/EREBP73, AP2-3, SSH1, OsSSH1, OsSNB	SUPERNUMERARY BRACT GENE	Supernumerary Bract gene, Supernumerary Bract, SUPERNUMERARY BRACT, supernumerary bract, transcription factor; SNB, APETALA2/ethylene-responsive element binding protein 73, APETALA2-3, suppression of shattering1	TRANSCRIPTION FACTOR SNB	snb, ssh1	7	DQ374663. PO:0009036; lodicule ; PO:0009034; floral bract ; PO:0009039; glume ; PO:0006455; carpel (sensu Poaceae) ; PO:0006327; spikelet meristem ; PO:0006441; stamen (sensu Poaceae). GRO:0007189; panicle stage PA1. TO:0000930: seed shattering. TO:0020109: vascular bundle development trait. a rice ortholog of SID1 (SISTER OF INDETERMINATE SPIKELET1) in maize.	 Reproductive organ - panicle,  Seed - Morphological traits,  Seed - Physiological traits - Shattering,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0235800	LOC_Os07g13170.2, LOC_Os07g13170.1	GR:0080036			GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0048506 - regulation of timing of meristematic phase transition, GO:0003700 - transcription factor activity, GO:0010022 - meristem determinacy, GO:0010077 - maintenance of inflorescence meristem identity, GO:0010092 - specification of organ identity, GO:0009908 - flower development	TO:0000436 - spikelet sterility, TO:0000671 - pre-flowering flower abortion, TO:0000209 - palea number, TO:0000225 - stamen number, TO:0006032 - panicle size, TO:0006030 - spikelet meristem identity, TO:0000208 - lemma number, TO:0000650 - lemma length, TO:0000622 - flower development trait, TO:0000382 - 1000-seed weight, TO:0000397 - grain size, TO:0000391 - seed size, TO:0000590 - grain weight, TO:0000396 - grain yield	PO:0006327 - spikelet meristem , PO:0009029 - stamen , PO:0009030 - carpel , PO:0009034 - flower bract , PO:0009036 - lodicule , PO:0009039 - glume , PO:0007615 - flower development stage 
6444	SP2(T)	sp2(t), sp2	SHORT PANICLE2	short panicle2, short panicle 2, short panicle-2				PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0061489			GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000089 - panicle type	PO:0009049 - inflorescence 
6445	SPA15	SPA15	SENESCENCE ASSOCIATED GENE	senescence associated gene					 Vegetative organ - Leaf						GO:0010150 - leaf senescence		
6450	SPS1	sps1, OsSPS1, SPS	SUCROSE PHOSPHATE SYNTHASE	sucrose phosphate synthase, Probable sucrose-phosphate synthase, UDP-glucose-fructose-phosphate glucosyltransferase, sucrose phosphate synthase 1	SUCROSE PHOSPHATE SYNTHASE		1	EC=2.4.1.14 A2WYE9(indica). Q0JGK4(japonica). BI810562, AU094286, C73370. D45890. U33175.	 Biochemical character	Os01g0919400	LOC_Os01g69030.4, LOC_Os01g69030.3, LOC_Os01g69030.2, LOC_Os01g69030.1	GR:0061425			GO:0005985 - sucrose metabolic process, GO:0009058 - biosynthetic process, GO:0005986 - sucrose biosynthetic process, GO:0046524 - sucrose-phosphate synthase activity		
6451	SRT5	srt5	SHORT ROOT 5	short root5					 Vegetative organ - Root						GO:0007275 - multicellular organismal development		
6452	SRT6	srt6	SHORT ROOT 6	short root6					 Vegetative organ - Root						GO:0007275 - multicellular organismal development		
6453	SS1	ss-1(t)	SEMI STERILITY	semi-sterility					 Reproductive organ - Pollination, fertilization, fertility - Other sterilities						GO:0007275 - multicellular organismal development		
6459	SUPS6	Su-PS-6(t)	SUPPRESSOR FOR PHOTOPERIOD-SENSITIVE GENE	Supressor of photoperiod-sensitive gene					 Reproductive organ - Heading date						GO:0009648 - photoperiodism		
6462	TDR1	tdr1	TILLERING DWARF RICE 1	tillering dwarf rice-1					 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6463	TDR2	tdr2	TILLERING DWARF RICE 2	tillering dwarf rice 2					 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6464	TGW6	tgw6, OsSTRL7, STRL7	TOTAL GRAIN WEIGHT6	total grain weight6, THOUSAND-GRAIN WEIGHT 6, STR-like 7	INDOLE-3-ACETIC ACID (IAA)-GLUCOSE HYDROLASE	TGW6(Kasalath), tgw6(Nipponbare), TGW6-Kasalath	6	LOC_Os06g41850. TGW6 encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. AB513135. The Kasalath allele contained six nucleotide substitutions and a 1-bp deletion at nucleotide 313 compared to the Nipponbare allele. Nipponbare TGW6 protein hydrolyzed IAA-glucose into IAA and glucose, but Kasalath TGW6 did not. (Ishimaru et al.)	 Biochemical character,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os06g0623700	LOC_Os06g41850.1				GO:0009683 - indoleacetic acid metabolic process, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016844 - strictosidine synthase activity, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016020 - membrane	TO:0000590 - grain weight, TO:0000734 - grain length	
6465	TMS6	tms6	THERMOSENSITIVE MALE STERILITY 6	thermosensitive male sterility6			5		 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus		
6466	TNR1	Tnr1	TRANSPOSABLE DNA ELEMENT	transposable DNA element, Transposal element-1, transposon Tnr1				D21329, D21330, D21331, D21332, D21333, D21335, D21336. 	 Other			GR:0060959			GO:0032196 - transposition		
6471	TR1	tr1	TINY RICE 1	tiny rice			8	A tiny rice dwarf mutant (tr1) shows abnormal morphology such as narrow and short leaf blade, and dark green phenotypes. The recessive mutant gene, tr1, is located between E4443 and RM264 at the end of long arm of chromosome 8.	 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development		
6472	TRXH	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1	THIOREDOXIN H-TYPE	Thioredoxin H-type, Phloem sap 13 kDa protein 1, phloem protein13-1, h-type thioredoxin 1, thioredoxin h1	CYTOSOLIC THIOREDOXIN		7	LOC_Os07g08840. cylosolic thioredoxin. D21836, D26547. D16043. A2YIW7(indica), Q0D840(japonica). OsTrx23 in Esfahani and Shahpiri 2014, Shahriari-Farfani  et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0186000	LOC_Os07g08840.3, LOC_Os07g08840.2, LOC_Os07g08840.1				GO:0006810 - transport, GO:0005737 - cytoplasm, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0051775 - response to redox state, GO:0006952 - defense response, GO:0045454 - cell redox homeostasis, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000112 - disease resistance	
6473	TS		TEMPERATURE SENSITIVE GENE	temperature sensitive gene		ts	1	TS was located between S13528 and S10581 on the long arm of chromosome 1.	 Coloration - Chlorophyll						GO:0009266 - response to temperature stimulus, GO:0010027 - thylakoid membrane organization, GO:0009658 - chloroplast organization		
6474	UDT1	Udt1, bHLH164, OsUDT1, OsbHLH164	UNDEVELOPED TAPETUM 1	Undeveloped tapetum-1, undeveloped Tapetum1, undeveloped Tapetum 1, undeveloped tapetum 1, UDT1 protein, basic helix-loop-helix protein 164	UDT1 PROTEIN	udt1-1, udt1-2, udt1	7	AY953870, AAX55226. LOC_Os07g36460. basic helix loop helix protein; major regulator of early tapetum development. PO:0009051; spikelet ; PO:0006450; tapetum (sensu Poaceae) ; PO:0004700; middle layer ; PO:0000032; tetrad of microspores. GRO:0007212; stamen stage ST5 ; GRO:0007149; 5.1-early booting stage ; GRO:0007047; 02-seedling ; GRO:0007216; 1.1-dry seed.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0549600	LOC_Os07g36460.1	GR:0080007			GO:0048443 - stamen development, GO:0009555 - pollen development, GO:0048653 - anther development, GO:0005634 - nucleus, GO:0048658 - tapetal layer development, GO:0048656 - tapetal layer formation, GO:0045449 - regulation of transcription, GO:0030528 - transcription regulator activity	TO:0000245 - pollen free, TO:0000215 - stamen anatomy and morphology trait	PO:0000032 - tetrad of microspores , PO:0004700 - anther wall middle layer , PO:0009071 - anther wall tapetum , PO:0009051 - spikelet 
6475	W7LD	W7LD							 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6476	W7LR	W7LR							 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6477	W8RWC	W8RWC	W8RWC						 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6478	WAF1	waf1, waf1-1, waf1-2, HEN1	WAVY LEAF 1	wavy leaf 1-1, wavy leaf 1-2, WAVY LEAF1, HUA ENHANCER 1		waf1, waf1-1, waf1-2	7	The locus was roughly mapped to the short arm of chromosome 7 between two markers S11633-2 and E12196. AB583903. an Ortholog of Arabidopsis HEN1. LOC_Os07g06970. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0164000	LOC_Os07g06970.1				GO:0009908 - flower development, GO:0010076 - maintenance of floral meristem identity, GO:0008173 - RNA methyltransferase activity, GO:0008171 - O-methyltransferase activity, GO:0007275 - multicellular organismal development		PO:0007615 - flower development stage 
6489	XTH1	OsXTH1	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 1	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 1	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 1		7		 Biochemical character	Os07g0529700	LOC_Os07g34580.2, LOC_Os07g34580.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process		
6490	XTH10	OsXTH10	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 10	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 10	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 10		6		 Biochemical character	Os06g0697000	LOC_Os06g48200.1				GO:0007568 - aging, GO:0009739 - response to gibberellin stimulus, GO:0009409 - response to cold, GO:0009741 - response to brassinosteroid stimulus, GO:0009733 - response to auxin stimulus, GO:0042545 - cell wall modification, GO:0080022 - primary root development, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005886 - plasma membrane, GO:0009505 - plant-type cell wall, GO:0005737 - cytoplasm, GO:0048046 - apoplast, GO:0010411 - xyloglucan metabolic process, GO:0009612 - response to mechanical stimulus, GO:0009408 - response to heat, GO:0080039 - xyloglucan endotransglucosylase activity		
6491	XTH11	OsXTH11, XTR2, OsXTR2, Meri-5	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 11	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 11, XET-related gene 2, xyloglucan endotransglucosylase/hydrolase 11	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 11		6	D16085.	 Biochemical character	Os06g0696400	LOC_Os06g48160.1				GO:0007568 - aging, GO:0005886 - plasma membrane, GO:0009408 - response to heat, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009612 - response to mechanical stimulus, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process, GO:0009505 - plant-type cell wall, GO:0010411 - xyloglucan metabolic process, GO:0009741 - response to brassinosteroid stimulus, GO:0005737 - cytoplasm, GO:0009733 - response to auxin stimulus, GO:0080022 - primary root development, GO:0042545 - cell wall modification, GO:0080039 - xyloglucan endotransglucosylase activity, GO:0009409 - response to cold, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0009739 - response to gibberellin stimulus		
6492	XTH12	OsXTH12	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 12	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 12	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 12		6		 Biochemical character	Os06g0696600	LOC_Os06g48180.2, LOC_Os06g48180.1				GO:0005618 - cell wall, GO:0006073 - cellular glucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast		
6493	XTH13	OsXTH13	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 13	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 13	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 13		2		 Biochemical character	Os02g0280200	LOC_Os02g17880.1				GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		
6494	XTH14	OsXTH14	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 14	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 14	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 14		2		 Biochemical character	Os02g0280300	LOC_Os02g17900.1				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0006073 - cellular glucan metabolic process		
6495	XTH15	OsXTH15	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 15	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 15	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 15		6	LOC_Os06g22919 (Os06g0335900/Os06g0335975). GO:0071555: cell wall organization. 	 Biochemical character	Os06g0335900	LOC_Os06g22919.4, LOC_Os06g22919.3, LOC_Os06g22919.2, LOC_Os06g22919.1				GO:0010411 - xyloglucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0042546 - cell wall biogenesis		
6496	XTH16	OsXTH16	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 16	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 16	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 16		4		 Biochemical character	Os04g0604900	LOC_Os04g51520.1				GO:0006073 - cellular glucan metabolic process, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		
6497	XTH17	OsXTH17, OsXTH8	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 17	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 17	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17		8	Q76BW5. AB110604.	 Biochemical character	Os08g0237000	LOC_Os08g13920.1				GO:0005618 - cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast		
6498	XTH18	OsXTH18	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 18	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 18	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18		6	LOC_Os06g48170.	 Biochemical character	Os06g0696500	LOC_Os06g48170.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process		
6499	XTH19	OsXTH19	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 19	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 19, xyloglucan endotransglucosylase/hydrolase 19	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19		3		 Biochemical character	Os03g0108300	LOC_Os03g01800.1				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0040007 - growth, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006073 - cellular glucan metabolic process, GO:0048046 - apoplast	TO:0000346 - tiller number, TO:0000135 - leaf length, TO:0000145 - internode length	
6500	XTH2	OsXTH2, XTR1, OsXTR1	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 2	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 2, XET-related gene 1	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2		11	LOC_Os11g33270. D41305. 	 Biochemical character	Os11g0539200	LOC_Os11g33270.1				GO:0009505 - plant-type cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0009826 - unidimensional cell growth, GO:0009753 - response to jasmonic acid stimulus, GO:0016020 - membrane, GO:0009733 - response to auxin stimulus, GO:0009645 - response to low light intensity stimulus, GO:0009612 - response to mechanical stimulus, GO:0009507 - chloroplast, GO:0006073 - cellular glucan metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast	TO:0000172 - jasmonic acid sensitivity	
6501	XTH20	OsXTH20, XET32	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 20	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 20, xyloglucan endotransglucosylase/hydrolase 20, xyloglucan endotransglucosylase/hydrolase protein 32	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20		10	XET32 in Aya et al. 2014.	 Biochemical character	Os10g0545500	LOC_Os10g39840.1				GO:0009832 - plant-type cell wall biogenesis, GO:0031122 - cytoplasmic microtubule organization, GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
6502	XTH21	OsXTH21	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 21	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 21	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21		7	LOC_Os07g29750.	 Biochemical character	Os07g0480800	LOC_Os07g29750.1				GO:0006073 - cellular glucan metabolic process, GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0005618 - cell wall, GO:0048046 - apoplast		
6503	XTH22	OsXTH22	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 22	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 22	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 22		2	LOC_Os02g57770.	 Biochemical character	Os02g0823700	LOC_Os02g57770.1				GO:0006073 - cellular glucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0048046 - apoplast		
6504	XTH23	OsXTH23, XTR3, OsXTR3	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 23	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 23, XET-related gene 3	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 23		2		 Biochemical character	Os02g0696500	LOC_Os02g46910.2, LOC_Os02g46910.1				GO:0006073 - cellular glucan metabolic process, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		
6505	XTH24	OsXTH24	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 24	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 24	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24		3		 Biochemical character	Os03g0854600	LOC_Os03g63760.1				GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process		
6506	XTH25	OsXTH25	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 25	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 25	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 25		10		 Biochemical character	Os10g0577500	LOC_Os10g42670.1				GO:0005618 - cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0048046 - apoplast, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
6507	XTH26	OsXTH26	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 26	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 26	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 26		2		 Biochemical character	Os02g0127800	LOC_Os02g03550.1				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process		
6508	XTH27	OsXTH27, XTH	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 27	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 27	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27		10	LOC_Os10g02770.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0117000	LOC_Os10g02770.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009908 - flower development, GO:0080086 - stamen filament development, GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0010154 - fruit development, GO:0010087 - phloem or xylem histogenesis, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall		PO:0007615 - flower development stage 
6509	XTH28	OsXTH28	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 28	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 28	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 28		3		 Biochemical character	Os03g0239000	LOC_Os03g13570.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0048046 - apoplast, GO:0080086 - stamen filament development, GO:0006073 - cellular glucan metabolic process, GO:0010154 - fruit development, GO:0010087 - phloem or xylem histogenesis, GO:0005618 - cell wall		
6510	XTH29	OsXTH29	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 29	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 29	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 29		9		 Biochemical character								
6511	XTH3	OsXTH3, XTR4, OsXTR4	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 3	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 3, XET-related gene 4	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3		4		 Biochemical character	Os04g0631200	LOC_Os04g53950.3, LOC_Os04g53950.2, LOC_Os04g53950.1				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0048046 - apoplast		
6512	XTH4	OsXTH4	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 4	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 4	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4		8		 Biochemical character	Os08g0240500	LOC_Os08g14200.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0005618 - cell wall		
6513	XTH5	OsXTH5	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 5	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 5	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 5		8		 Biochemical character						GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006073 - cellular glucan metabolic process		
6514	XTH6	OsXTH6	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 6	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 6	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 6		4		 Biochemical character	Os04g0604200	LOC_Os04g51450.1				GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
6515	XTH7	OsXTH7	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 7	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 7	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7		4		 Biochemical character	Os04g0604800	LOC_Os04g51510.1				GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0006073 - cellular glucan metabolic process		
6516	XTH8	OsXTH8, OsSTA207	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 8	Xyloglucan endotransglycosylase/hydrolase, xyloglucan endotransglucosylase 8	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 8		8	LOC_Os08g13980. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0237800	LOC_Os08g13980.1				GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0048046 - apoplast		PO:0009066 - anther 
6517	XTH9	OsXTH9, OsXET9, XTH1, OsXTH1	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 9	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 9, xyloglucan endotransglycosylase 1, XYLOGLUCAN ENDOTRANSGLUCOSYLASE-HYDROLASE 9	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9		4	AF443603. OsXTH1 in Duan et al. 2006, Gan et al. 2015, Jang and  Li 2017. LOC_Os04g51460.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0604300	LOC_Os04g51460.1				GO:0009741 - response to brassinosteroid stimulus, GO:0005618 - cell wall, GO:0006073 - cellular glucan metabolic process, GO:0009826 - unidimensional cell growth, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009753 - response to jasmonic acid stimulus, GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity	TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity	
6518	YK1	YK1	HC TOXIN REDUCTASE-LIKE GENE	HC toxin reductase-like gene	HC TOXIN REDUCTASE HOMOLOGUE				 Biochemical character						GO:0016491 - oxidoreductase activity		
6519	YK1	YK1	HC TOXIN REDUCTASE-LIKE GENE	HC toxin reductase-like gene	HC TOXIN REDUCTASE HOMOLOGUE				 Biochemical character						GO:0016491 - oxidoreductase activity		
6520	WRKY1	OsWRKY1, OsWRKY1v2	WRKY GENE1	Rice WRKY gene1	TRANSCRIPTION FACTOR WRKY1		1	LOC_Os01g14440. BK005004. WRKY96 in Zhang and Wang (2005). and in Berri et al. (2009). WRKY4 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0246700	LOC_Os01g14440.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
6521	WRKY10	OsWRKY10	WRKY GENE 10	Rice WRKY gene10	TRANSCRIPTION FACTOR WRKY10		1	LOC_Os01g09100. BK005013. AY341854. WRKY27 in Zhang and Wang (2005) and in Berri et al. (2009), WRKY3 in Wu et al. (2005) and Sun et al. 2014. HQ858826.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0186000	LOC_Os01g09100.1				GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
6522	WRKY11	OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2	WRKY GENE11	Rice WRKY gene11, semidwarf and late flowering 1	TRANSCRIPTION FACTOR WRKY11	dlf1	1	LOC_Os01g43650. BK005014. AY341856. WRKY24 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY10 in Wu et al. (2005) and Sun et al. 2014. HQ858857. 	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0626400	LOC_Os01g43650.2, LOC_Os01g43650.1				GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:2000028 - regulation of photoperiodism, flowering, GO:0006952 - defense response, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009609 - response to symbiotic bacterium, GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0002616 - flowering time, TO:0000188 - drought sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance, TO:0000207 - plant height, TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
6523	WRKY12	OsWRKY12	WRKY GENE 12	Rice WRKY gene12	TRANSCRIPTION FACTOR WRKY12		1	LOC_Os01g43550. BK005015. AY676924. WRKY23 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY9 in Wu et al. (2005).  OsWRKY03 in Liu et al. 2005.	 Tolerance and resistance - Disease resistance	Os01g0624700	LOC_Os01g43550.2, LOC_Os01g43550.1				GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance	
6524	WRKY13	OsWRKY13	WRKY GENE 13	Rice WRKY gene13	TRANSCRIPTION FACTOR WRKY13		1	LOC_Os01g54600. BK005016. AY870602. WRKY84 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY16 in Wu et al. (2005). EF143611.	 Tolerance and resistance - Disease resistance	Os01g0750100	LOC_Os01g54600.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6525	WRKY14	OsWRKY14	WRKY GENE 14	Rice WRKY gene14	TRANSCRIPTION FACTOR WRKY14		1	LOC_Os01g53040. BK005017. AY870603. D24303. C26098. WRKY33 in Zhang and Wang (2005) and in Berri et al. (2009). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0730700	LOC_Os01g53040.1				GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	
6526	WRKY15	OsWRKY15	WRKY GENE 15	Rice WRKY gene15	TRANSCRIPTION FACTOR WRKY15		1	LOC_Os01g46800. BK005018. WRKY97 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY11 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0656400	LOC_Os01g46800.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	
6527	WRKY16	OsWRKY16	WRKY GENE16	Rice WRKY gene16	TRANSCRIPTION FACTOR WRKY		1	LOC_Os01g47560. BK005019. AU164995. AY341855. AY870604. WRKY35 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY12 in Wu et al. (2005) and Sun et al. 2014.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0665500/Os01g0665750					GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
6528	WRKY17	OsWRKY17	RICE WRKY GENE17	Rice WRKY gene17	TRANSCRIPTION FACTOR WRKY17		1	LOC_Os01g74140. BK005020. AY341842. AY870605. WRKY28 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY24 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os01g0972800	LOC_Os01g74140.1				GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
6529	WRKY18	OsWRKY18	RICE WRKY GENE18	Rice WRKY gene18	TRANSCRIPTION FACTOR WRKY18		10	LOC_Os10g18099. BK005021. WRKY65 in Zhang and Wang (2005) and Berri et al. (2009). Os10g0328400 (in Rap3 (build5)).	 Tolerance and resistance - Disease resistance		LOC_Os10g18099				GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6530	WRKY19	OsWRKY19	WRKY GENE 19	Rice WRKY gene19	TRANSCRIPTION FACTOR WRKY19		5	LOC_Os05g49620. BK005022. WRKY107 in Zhang and Wang (2005). WRKY60 in Wu et al. (2005) and Sun et al. 2014.  WRKY110 in Berri et al. (2009). HQ858860. up-regulated after fertilization (Abiko et al. 2013).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0571200	LOC_Os05g49620.1				GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009790 - embryonic development, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	
6531	WRKY2	OsWRKY2	RICE WRKY GENE2	Rice WRKY gene2	TRANSCRIPTION FACTOR WRKY2		10	LOC_Os10g42850. BK005005. WRKY1 in Zhang and Wang (2005) and Berri et al. (2009). WRKY4 in Wu et al. (2005). WRKY86 in Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0579400	LOC_Os10g42850.1				GO:0006952 - defense response, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
6532	WRKY20	OsWRKY20	RICE WRKY GENE20	Rice WRKY gene20	TRANSCRIPTION FACTOR WRKY20		1	LOC_Os01g60540. BK005023. WRKY40 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY19 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0820900	LOC_Os01g60540.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0042742 - defense response to bacterium	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
6533	WRKY21	OsWRKY21	RICE WRKY GENE21	Rice WRKY gene21	TRANSCRIPTION FACTOR WRKY21		1	BK005024. AY870606. WRKY68 in Zhang and Wang (2005) and Berri et al. (2009). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0821600	LOC_Os01g60640.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	
6534	WRKY22	OsWRKY22	WRKY GENE 22	Rice WRKY gene22	TRANSCRIPTION FACTOR WRKY22		1	LOC_Os01g60490. BK005025. WRKY38 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY17 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0820400	LOC_Os01g60490.1				GO:0003700 - transcription factor activity, GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
6535	WRKY23	OsWRKY23	WRKY GENE 23	Rice WRKY gene23	TRANSCRIPTION FACTOR WRKY23		1	BK005026. AY341845. AY870607. WRKY31 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY15 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0734000	LOC_Os01g53260.1				GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	
6536	WRKY24	OsWRKY24	WRKY GENE 24	Rice WRKY gene24	TRANSCRIPTION FACTOR WRKY24		1	LOC_Os01g61080. BK005027. AY341849. AY870608. WRKY22 in Zhang and Wang (2005), in Wu et al. (2005), in Berri et al. (2009), in Sun et al. 2014. 	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0826400	LOC_Os01g61080.1				GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0080027 - response to herbivore, GO:0006952 - defense response, GO:0002213 - defense response to insect	TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000454 - stem borer resistance, TO:0000432 - temperature response trait	PO:0020039 - leaf lamina 
6537	WRKY25	OsWRKY25, OsWRKY44, WRKY44	WRKY GENE 25	WRKY GENE 44.	TRANSCRIPTION FACTOR WRKY25		8	LOC_Os08g13840. BK005028. BK005047. OsWRKY56 in Zhang and Wang (2005) and Berri et al. (2009). WRKY73 in Wu et al. (2005)	 Tolerance and resistance - Disease resistance	Os08g0235800	LOC_Os08g13840.2, LOC_Os08g13840.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
6538	WRKY26	OsWRKY26, OsWRKY59	WRKY GENE 26	Rice WRKY gene 26, Rice WRKY gene 59	TRANSCRIPTION FACTOR WRKY26		1	LOC_Os01g51690. BK005029. BK005062. AY870609. D43156. WRKY36 in Zhang and Wang (2005) and Berri et al. (2009). WRKY13 in Wu et al. (2005) and Sun et al. 2014. HQ858873. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0714800	LOC_Os01g51690.1				GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006952 - defense response	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
6539	WRKY27	OsWRKY27	RICE WRKY GENE27	Rice WRKY gene27	TRANSCRIPTION FACTOR WRKY27		1	LOC_Os01g40430. BK005030. WRKY32 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY8 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0586800	LOC_Os01g40430.1				GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
6540	WRKY28	OsWRKY28	WRKY GENE 28	Rice WRKY gene28	TRANSCRIPTION FACTOR WRKY28		6	LOC_Os06g44010. BK005031. WRKY4 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY66 in Wu et al.(2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0649000	LOC_Os06g44010.1				GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	
6541	WRKY29	OsWRKY29	WRKY GENE 29	Rice WRKY gene29	TRANSCRIPTION FACTOR WRKY29		7	LOC_Os07g02060. BK005032. AY341858. WRKY49 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY67 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0111400	LOC_Os07g02060.1				GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000188 - drought sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
6542	WRKY3	OsWRKY3	WRKY GENE3	Rice WRKY gene3	TRANSCRIPTION FACTOR WRKY3		3	LOC_Os03g55080. BK005006. AY341859. AK069091 in Qiu et al. 2004. WRKY37 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0758000	LOC_Os03g55080.1				GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium	TO:0000188 - drought sensitivity, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
6543	WRKY30	OsWRKY30	WRKY GENE 30	Rice WRKY gene30	TRANSCRIPTION FACTOR WRKY30		8	LOC_Os08g38990. BK005033, DQ298180. AY870610. WRKY47 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY76 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os08g0499300	LOC_Os08g38990.4, LOC_Os08g38990.3, LOC_Os08g38990.2, LOC_Os08g38990.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0080027 - response to herbivore, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000454 - stem borer resistance, TO:0006001 - salt tolerance	
6544	WRKY31	OsWRKY31	WRKY GENE 31	Rice WRKY gene31	TRANSCRIPTION FACTOR WRKY31		6	LOC_Os06g30860. BK005034. WRKY6 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY65 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os06g0504900	LOC_Os06g30860.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6545	WRKY32	OsWRKY32	WRKY GENE 32	Rice WRKY gene32	TRANSCRIPTION FACTOR WRKY32		2	LOC_Os02g53100. BK005035. WRKY17 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY30 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os02g0770500	LOC_Os02g53100.1				GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
6546	WRKY33	OsWRKY33	WRKY GENE 33	Rice WRKY gene33	TRANSCRIPTION FACTOR WRKY33		9	BK005036.	 Tolerance and resistance - Disease resistance						GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding		
6547	WRKY34	OsWRKY34	WRKY GENE 34	Rice WRKY gene34	TRANSCRIPTION FACTOR WRKY34		2	LOC_Os02g43560. BK005037. WRKY12 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY28 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os02g0652100	LOC_Os02g43560.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6548	WRKY35	OsWRKY35	WRKY GENE 35	Rice WRKY gene35	TRANSCRIPTION FACTOR WRKY35		4	LOC_Os04g39570. BK005038. AY341843. AY341851. WRKY37 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY41 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0471700	LOC_Os04g39570.2, LOC_Os04g39570.1				GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0043565 - sequence-specific DNA binding	TO:0000303 - cold tolerance	
6549	WRKY36	OsWRKY36	WRKY GENE 36	Rice WRKY gene36	TRANSCRIPTION FACTOR WRKY36		4	 LOC_Os04g46060. BK005039. WRKY42 in Wu et al. (2005) and Sun et al. 2014. WRKY111 in Berri et al. (2009). HQ858855.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0545000	LOC_Os04g46060.1				GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	
6550	WRKY37	OsWRKY37	WRKY GENE 37	Rice WRKY gene37	TRANSCRIPTION FACTOR WRKY37		4	LOC_Os04g50920. BK005040. AJ575239. WRKY34 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY43 in Wu et al. (2005).	 Seed,  Tolerance and resistance - Disease resistance,  Other	Os04g0597300	LOC_Os04g50920.1				GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000620 - embryo development trait	
6551	WRKY38	OsWRKY38	WRKY GENE 38	Rice WRKY gene38	TRANSCRIPTION FACTOR WRKY38				 Tolerance and resistance - Disease resistance						GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding		
6552	WRKY39	OsWRKY39	WRKY GENE 39	Rice WRKY gene39	TRANSCRIPTION FACTOR WRKY39		2	LOC_Os02g16540. BK005042. WRKY54 in Zhang and Wang (2005) and Berri et al. (2009). WRKY26 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os02g0265200	LOC_Os02g16540.2, LOC_Os02g16540.1				GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
6553	WRKY4	OsWRKY4, WRKY122, OsWRKY122	WRKY GENE 4	Rice WRKY gene4	TRANSCRIPTION FACTOR WRKY4	OsWRKY45-1, OsWRKY45-2	3	LOC_Os03g55164. BK005007. AY341852. AY341848. WRKY2 in Zhang and Wang (2005) and Berri et al. (2009). WRKY36 in Wu et al. (2005) and Sun et al. 2014. WRKY120 in Berri et al. (2009). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0758900	LOC_Os03g55164.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009723 - response to ethylene stimulus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	
6554	WRKY40	OsWRKY40	WRKY GENE 40	Rice WRKY gene40	TRANSCRIPTION FACTOR WRKY40		11	LOC_Os11g02530. BK005043. WRKY10 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY90 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0117500	LOC_Os11g02530.1				GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	
6555	WRKY41	OsWRKY41	WRKY GENE 41	Rice WRKY gene41	TRANSCRIPTION FACTOR WRKY41		11	LOC_Os11g45924. BK005044.	 Tolerance and resistance - Disease resistance	Os11g0686400	LOC_Os11g45924.1				GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
6556	WRKY42	OsWRKY42, WRKY-42	WRKY GENE 42	Rice WRKY gene42, WRKY transcription factor 42	TRANSCRIPTION FACTOR WRKY42		2	LOC_Os02g26430. BK005045. WRKY50 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY27 in Wu et al. (2005) and Sun et al. 2014. up-regulated after fertilization (Abiko et al. 2013).	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0462800	LOC_Os02g26430.1				GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0010150 - leaf senescence, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009790 - embryonic development, GO:0042742 - defense response to bacterium	TO:0000615 - abscisic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000188 - drought sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000249 - leaf senescence, TO:0000175 - bacterial blight disease resistance	PO:0001054 - 4 leaf senescence stage 
6557	WRKY43	OsWRKY43	WRKY GENE 43	Rice WRKY gene43	TRANSCRIPTION FACTOR WRKY43		5	LOC_Os05g49210. BK005046. WRKY86 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY59 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0567200	LOC_Os05g49210.1				GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response, GO:0003700 - transcription factor activity	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000188 - drought sensitivity, TO:0000175 - bacterial blight disease resistance	
6559	WRKY45	OsWRKY45	WRKY GENE 45	Rice WRKY gene45	TRANSCRIPTION FACTOR WRKY45	OsWRKY45-1, OsWRKY45-2	5	BK005048. DQ298181. AY870611. WRKY71 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY50 in Wu et al. (2005) and Sun et al. 2014. GQ331930, GQ331931, GQ331932 (OsWRKY45-1), GQ331927, GQ331928, GQ331929 (OsWRKY45-2). GO:1902065: response to L-glutamate.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os05g0322900	LOC_Os05g25770.1				GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009863 - salicylic acid mediated signaling pathway, GO:0002237 - response to molecule of bacterial origin, GO:0009651 - response to salt stress, GO:0009809 - lignin biosynthetic process, GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0010266 - response to vitamin B1, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000429 - salt sensitivity, TO:0000112 - disease resistance, TO:0000454 - stem borer resistance, TO:0000175 - bacterial blight disease resistance	
6560	WRKY46	OsWRKY46, WRKY91, OsWRKY91	WRKY GENE 46	WRKY GENE 91	TRANSCRIPTION FACTOR WRKY46		11	LOC_Os11g02480. BK005049. CA755335. WRKY76 in Zhang and Wang (2005) and Berri et al. (2009). WRKY88 in Wu et al. (2005). WRKY46A in Ross et al. (2007). WRKY8 in Zhang and Wang (2005) and in Berri et al. (2009).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os11g0116900	LOC_Os11g02480.2, LOC_Os11g02480.1				GO:0010039 - response to iron ion, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0002213 - defense response to insect, GO:0009411 - response to UV, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium	TO:0000160 - UV light sensitivity, TO:0000261 - insect damage resistance, TO:0000224 - iron sensitivity, TO:0000175 - bacterial blight disease resistance	
6561	WRKY47	OsWRKY47	WRKY GENE 47	Rice WRKY gene47	TRANSCRIPTION FACTOR WRKY47		7	LOC_Os07g48260. BK005050. WRKY79 in Zhang and Wang (2005) and Berri et al. (2009). WRKY72 in Wu et al. (2005) and Sun et al. 2014. HQ858848. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0680400	LOC_Os07g48260.1				GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0009863 - salicylic acid mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0009751 - response to salicylic acid stimulus	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
6562	WRKY48	OsWRKY48	WRKY GENE 48	Rice WRKY gene48	TRANSCRIPTION FACTOR WRKY48		5	LOC_Os05g40060. BK005051. WRKY95 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY53 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os05g0478400	LOC_Os05g40060.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6563	WRKY49	OsWRKY49	WRKY GENE 49	Rice WRKY gene49	TRANSCRIPTION FACTOR WRKY49		5	LOC_Os05g49100. BK005052. WRKY85 in Zhang and Wang (200) and in Berri et al. (2009). WRKY58 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os05g0565900	LOC_Os05g49100.1				GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6564	WRKY5	OsWRKY5	WRKY GENE 5	Rice WRKY gene5	TRANSCRIPTION FACTOR WRKY5		5	LOC_Os05g04640. BK005008. WRKY43 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY46 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0137500	LOC_Os05g04640.1				GO:0043565 - sequence-specific DNA binding, GO:0009409 - response to cold, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
6565	WRKY50	OsWRKY50	WRKY GENE 50	Rice WRKY gene50	TRANSCRIPTION FACTOR WRKY50		11	LOC_Os11g02540 (= Os11g0117550/Os11g0117600). BK005053. WRKY51 in Qiu et al. 2004. WRKY11 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY91 in Wu et al. (2005). WRKY50 and WRKY110 in Choi et al. 2017.	 Tolerance and resistance - Disease resistance	Os11g0117600	LOC_Os11g02540.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6566	WRKY52	OsWRKY52	WRKY GENE 52	Rice WRKY gene52	TRANSCRIPTION FACTOR WRKY52		11	LOC_Os11g02470. BK005055. WRKY7 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY87 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0116600	LOC_Os11g02470.1				GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
6567	WRKY53	OsWRKY53, WRKY-53	WRKY GENE 53	Rice WRKY gene53	TRANSCRIPTION FACTOR WRKY53	oswrky53	5	BK005056. WRKY61 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY51 in Wu et al. (2005) and Sun et al. 2014. XB21 interacting protein (XB21IP). the target of miRNA novel-0586-5p (Fang et al. 2017). GO:1900459: positive regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os05g0343400	LOC_Os05g27730.1				GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009611 - response to wounding, GO:0043565 - sequence-specific DNA binding, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus	TO:0000454 - stem borer resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000206 - leaf angle, TO:0000397 - grain size, TO:0000391 - seed size, TO:0002677 - brassinosteroid sensitivity	
6568	WRKY54	OsWRKY54	WRKY GENE 54	Rice WRKY gene54	TRANSCRIPTION FACTOR WRKY54		5	LOC_Os05g40080. BK005057. WRKY93 in Zhang and Wang (2005) and in Berri et al. (2005). WRKY56 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0478800	LOC_Os05g40080.1				GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0042742 - defense response to bacterium	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
6569	WRKY55	OsWRKY55	WRKY GENE 55	Rice WRKY gene55	TRANSCRIPTION FACTOR WRKY55		3	LOC_Os03g20550. BK005058. CF282152, CF330819, CF303772, CF282153, CF330818, CF305084, CF328161. WRKY72 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY31 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os03g0321700	LOC_Os03g20550.3, LOC_Os03g20550.2, LOC_Os03g20550.1				GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6570	WRKY56	OsWRKY56	WRKY GENE 56	Rice WRKY gene56	TRANSCRIPTION FACTOR WRKY56		1	LOC_Os01g62514. BK005059. WRKY108 in Berri et al. (2009). Os01g0843800(build5)->Os01g0842801(IRGSP1).	 Tolerance and resistance - Disease resistance	Os01g0842801	LOC_Os01g62514.1				GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
6571	WRKY57	OsWRKY57	WRKY GENE 57	Rice WRKY gene57	TRANSCRIPTION FACTOR WRKY57		12	BK005060. AY341860. WRKY73 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY95 in Wu et al. (2005). WRKY92 (BX000496_51548~54565 bp) in Qiu et al. 2004, Rice WRKY Working Group 2012.	 Tolerance and resistance - Disease resistance	Os12g0102300	LOC_Os12g01180.1				GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
6572	WRKY58	OsWRKY58	WRKY GENE 58	Rice WRKY gene58	TRANSCRIPTION FACTOR WRKY58		5	LOC_Os05g45230. BK005061. WRKY108 in Zhang and Wang (2005). WRKY112 in Berri et al. (2009).	 Tolerance and resistance - Disease resistance	Os05g0528500	LOC_Os05g45230.1				GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
6574	WRKY6	OsWRKY6, WRKY-6	WRKY GENE6	Rice WRKY gene6	TRANSCRIPTION FACTOR WRKY6		3	LOC_Os03g58420. BK005009. WRKY102 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY38 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0798500	LOC_Os03g58420.2, LOC_Os03g58420.1				GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
6575	WRKY60	OsWRKY60	WRKY GENE 60	Rice WRKY gene60	TRANSCRIPTION FACTOR WRKY60		3	LOC_Os03g45450. BK005063. AU162739. WRKY25 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY34 in Wu et al.(2005).	 Tolerance and resistance - Disease resistance	Os03g0657400	LOC_Os03g45450.1				GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
6577	WRKY62	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10	WRKY GENE 62	Rice WRKY gene62, XA21 binding protein 10, WRKY transcription factor 62	TRANSCRIPTION FACTOR WRKY62		9	LOC_Os09g25070. BK005065. DQ298182. DAA05127. WRKY14 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY82 in Wu et al. (2005) and Sun et al. 2014. GO:1900150 regulation of defense response to fungus. GO:1900425 negative regulation of defense response to bacterium. GO:2000378: negative regulation of reactive oxygen species metabolic process. TO:0020076: phenolic compound content. GO:0080142: regulation of salicylic acid biosynthetic process. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0080141: regulation of jasmonic acid biosynthetic process.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0417800	LOC_Os09g25070.2, LOC_Os09g25070.1				GO:0009611 - response to wounding, GO:0003700 - transcription factor activity, GO:0009695 - jasmonic acid biosynthetic process, GO:0006952 - defense response, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0048364 - root development, GO:0009699 - phenylpropanoid biosynthetic process, GO:0031348 - negative regulation of defense response, GO:0050832 - defense response to fungus, GO:0001666 - response to hypoxia, GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0002238 - response to molecule of fungal origin, GO:0031349 - positive regulation of defense response, GO:0009697 - salicylic acid biosynthetic process	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000656 - root development trait, TO:0000227 - root length	PO:0001031 - 4 root elongation stage 
6578	WRKY63	OsWRKY63	WRKY GENE 63		TRANSCRIPTION FACTOR WRKY		11	LOC_Os11g45920. BK005066. WRKY67 (CA760141) in Zhang and Wang (2005) and in Berri et al. (2009). WRKY93 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os11g0686250	LOC_Os11g45920.1				GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
6579	WRKY64	OsWRKY64	WRKY GENE 64	Rice WRKY gene64	TRANSCRIPTION FACTOR WRKY64		12	LOC_Os12g02450. BK005067. DQ298183. WRKY75 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY97 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0116700	LOC_Os12g02450.1				GO:0043565 - sequence-specific DNA binding, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0010039 - response to iron ion	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000224 - iron sensitivity	
6580	WRKY65	OsWRKY65	WRKY GENE65	Rice WRKY gene65	TRANSCRIPTION FACTOR WRKY65		12	LOC_Os12g02470. BK005068. WRKY74 in Zhang and wang (2005) and in Berri et al. (2009). WRKY96 in Wu et al. (2005) and Sun et al. 2014. Os12g0116850 (build4) -> Os12g0116800 (IRGSP1). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0116750/Os12g0116800					GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
6581	WRKY66	OsWRKY66	WRKY GENE 66	Rice WRKY gene66	TRANSCRIPTION FACTOR WRKY66		2	LOC_Os02g47060. BK005069. WRKY57 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY29 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0698800	LOC_Os02g47060.1				GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
6582	WRKY67	OsWRKY67	WRKY GENE 67	Rice WRKY gene67	TRANSCRIPTION FACTOR WRKY67		5	LOC_Os05g09020. BK005070. BE230596, BM419201. WRKY63 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY47 in Wu et al. (2005) and Sun et al. 2014. HQ858875. GO:1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0183100	LOC_Os05g09020.2, LOC_Os05g09020.1				GO:0006952 - defense response, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0043565 - sequence-specific DNA binding, GO:0009863 - salicylic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000477 - panicle blast disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000303 - cold tolerance	
6583	WRKY68	OsWRKY68	WRKY GENE 68	Rice WRKY gene68	TRANSCRIPTION FACTOR WRKY68		4	LOC_Os04g51560. BK005071. WRKY30 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY44 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0605100	LOC_Os04g51560.1				GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000188 - drought sensitivity, TO:0000166 - gibberellic acid sensitivity	
6584	WRKY69	OsWRKY69	WRKY GENE 69	Rice WRKY gene69	TRANSCRIPTION FACTOR WRKY69		8	LOC_Os08g29660. BK005072. WRKY53 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY75 in Wu et al. (2005). HQ858835.	 Tolerance and resistance - Disease resistance	Os08g0386200	LOC_Os08g29660.1				GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
6585	WRKY7	OsWRKY7	WRKY GENE 7	Rice WRKY gene7	TRANSCRIPTION FACTOR WRKY7		5	LOC_Os05g46020. BK005010. DQ298179. AU093050. WRKY46 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY57 in Wu et al (2007) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0537100	LOC_Os05g46020.1				GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
6586	WRKY70	OsWRKY70	WRKY GENE 70	Rice WRKY gene70	TRANSCRIPTION FACTOR WRKY70		5	BK005073, DQ298184. WRKY60 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY52 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os05g0474800	LOC_Os05g39720.1				GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin	TO:0000273 - armyworm resistance, TO:0000454 - stem borer resistance, TO:0000315 - bacterial disease resistance, TO:0000261 - insect damage resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
6587	WRKY72	OsWRKY72, WRKY-72	WRKY GENE 72	Rice WRKY gene72	TRANSCRIPTION FACTOR WRKY72		11	HQ858851. BK005075. WRKY78 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY92 in Wu et al. (2005) and Sun et al. 2014.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os11g0490900	LOC_Os11g29870.1				GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0002213 - defense response to insect, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000261 - insect damage resistance	
6588	WRKY73	OsWRKY73	WRKY GENE 73	Rice WRKY gene73	TRANSCRIPTION FACTOR WRKY73		6	LOC_Os06g05380. BK005076. WRKY5 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY63 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0146250	LOC_Os06g05380.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009408 - response to heat	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
6589	WRKY74	OsWRKY74	WRKY GENE 74	Rice WRKY gene74	TRANSCRIPTION FACTOR WRKY74		9	LOC_Os09g16510. BK005077. WRKY100 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY80 in Wu et al. (2005) and Sun et al. 2014. TO:0006045: phosphorus concentration.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0334500	LOC_Os09g16510.1				GO:0010106 - cellular response to iron ion starvation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000011 - nitrogen sensitivity, TO:0000303 - cold tolerance, TO:0000043 - root anatomy and morphology trait, TO:0000224 - iron sensitivity, TO:0000259 - heat tolerance	PO:0009005 - root , PO:0025034 - leaf 
6590	WRKY75	OsWRKY75	WRKY GENE 75	Rice WRKY gene75	TRANSCRIPTION FACTOR WRKY75		5	LOC_Os05g25700. BK005078. WRKY70 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY49 in Wu et al. (2005) and Sun et al. 2014. LOC_Os05g25700. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0321900					GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000188 - drought sensitivity, TO:0000276 - drought tolerance	
6591	WRKY76	OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3	WRKY GENE 76	Rice WRKY gene76	TRANSCRIPTION FACTOR WRKY76		9	LOC_Os09g25060. BK005079. AY323479. AF467736. DQ298185. WRKY58 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY81 in Wu et al. (2005). GO:1900150: regulation of defense response to fungus. GO:1900425 negative regulation of defense response to bacterium. GO:2000378: negative regulation of reactive oxygen species metabolic process. TO:0020076: phenolic compound content. GO:0080142: regulation of salicylic acid biosynthetic process. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0080141: regulation of jasmonic acid biosynthetic process.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os09g0417600	LOC_Os09g25060.1				GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0009699 - phenylpropanoid biosynthetic process, GO:0009697 - salicylic acid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0002237 - response to molecule of bacterial origin, GO:0002238 - response to molecule of fungal origin, GO:0003700 - transcription factor activity, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0048364 - root development, GO:0009751 - response to salicylic acid stimulus, GO:0009611 - response to wounding, GO:0009695 - jasmonic acid biosynthetic process, GO:0006952 - defense response	TO:0000656 - root development trait, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000227 - root length, TO:0002668 - jasmonic acid content, TO:0000074 - blast disease	PO:0001031 - 4 root elongation stage 
6592	WRKY77	OsWRKY77, WRKY-77	WRKY GENE 77	Rice WRKY gene77	TRANSCRIPTION FACTOR WRKY77		1	LOC_Os01g40260. BK005080. AY341846. WRKY20 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY7 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0584900	LOC_Os01g40260.1				GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
6593	WRKY87	OsWRKY87, OsSUSIBA2-like	WRKY GENE 87	Rice WRKY gene87, SUSABA2 Ortholog, Sugar signalling in barley 2-like	TRANSCRIPTION FACTOR WRKY		7	LOC_Os07g39480. BK005212. AY341850. OsWRKY78 in Xie et al. (2005), Ryu et al.(2006), Ross et al. (2007), Qiu et al. 2017. OsWRKY59 in Zhang & Wang (2005) and Berri et al. (2009). OsWRKY70 in Wu et al. (2005). AY324393. HQ858834.	 Tolerance and resistance - Disease resistance	Os07g0583700	LOC_Os07g39480.1				GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009737 - response to abscisic acid stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	
6594	WRKY102	OsWRKY102	WRKY GENE 102		TRANSCRIPTION FACTOR WRKY102		1	BK005213. AY341853. WRKY59 in Qiu et al. 2004. WRKY79 in Xie et al. (2005), in Ryu et al. (2006), and in Ross et al. (2007).  WRKY90 in Zhang and Wang (2005) and Berri et al. (2005). WRKY1 in Wu et al. (2005). WRKY12 in Pooja et al. (2015). WRKY100 in Rice WRKY Working Group (2012) and Choi et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0182700	LOC_Os01g08710.2, LOC_Os01g08710.1				GO:0006952 - defense response, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009751 - response to salicylic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000188 - drought sensitivity, TO:0000179 - biotic stress trait, TO:0000112 - disease resistance, TO:0000401 - plant growth hormone sensitivity	
6595	WRKY8	OsWRKY8	WRKY GENE 8	Rice WRKY gene8	TRANSCRIPTION FACTOR WRKY8		5	LOC_Os05g50610. BK005011. AY341857 in Qiu et al. 2014. AY870600. WRKY44 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY62 in Wu et al. (2005). OsWRKY061 in Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0583000	LOC_Os05g50610.2, LOC_Os05g50610.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006952 - defense response	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
6596	WRKY90	OsWRKY90	WRKY GENE 90	Rice WRKY gene90	TRANSCRIPTION FACTOR WRKY 90		9	LOC_Os09g30400. BK005214. AF459793. WRKY13 in Zhang and Wang (2005) and Berri et al. (2009). WRKY83 in Wu et al. (2005). WRKY80 in Xie et al. (2005), Ryu et al. (2006), Ross et al. (2007), Ricachenevsky et al. (2010) and Mao et al. (2017). OsiWRKY in Guo et al. (2004).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0481700	LOC_Os09g30400.3, LOC_Os09g30400.2, LOC_Os09g30400.1				GO:0009611 - response to wounding, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009409 - response to cold, GO:0043565 - sequence-specific DNA binding, GO:0010039 - response to iron ion, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0000249 - leaf senescence, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000224 - iron sensitivity	PO:0001054 - 4 leaf senescence stage 
6597	WRKY61	OsWRKY61, OsWRKY103, WRKY103	WRKY GENE 61	Rice WRKY gene61	TRANSCRIPTION FACTOR WRKY		11	LOC_Os11g45850. BK005064. BK005215. WRKY66 in Zhang and Wang (2005) and Berri et al. (2009). WRKY94 in Wu et al. (2005) and Sun et al. 2014. WRKY81 (Xie et al. 2005, Ryu et al. 2006) seems to be same as WRKY61. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0685700	LOC_Os11g45850.1				GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
6598	WRKY9	OsWRKY9	WRKY GENE 9	Rice WRKY gene9	TRANSCRIPTION FACTOR WRKY9		1	LOC_Os01g18584. BK005012. WRKY88 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY6 in Wu et al. (2005). Os01g0289600(IRGSP1). Os01g0289666 (in NCBI and UniProt). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0289600	LOC_Os01g18584.1				GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0009725 - response to hormone stimulus, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0003700 - transcription factor activity	TO:0000188 - drought sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity	
6602	RCN1	Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 1	Cen-like protein FDR2, RICE CENTRORADIALIS 1	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 1		11	Putative phosphatidylethanolamine-binding protein, Putative TFL1/CEN ortholog. TFL1/CEN-like gene. AF159882(Plant J.29 (6)743-750(2002)). PO:0006318; floret (sensu Poaceae) ; PO:0009049; inflorescence ; PO:0000230; inflorescence meristem ; PO:0009025; leaf ; PO:0020039; leaf lamina ; PO:0020104; leaf sheath ; PO:0009005; root ; PO:0006321; second order inflorescence branch ; PO:0020148; shoot apical meristem ; PO:0006322; third order inflorescence branch. GRO:0007048; 04-stem elongation stage ; GRO:0007189; panicle stage PA1 ; GRO:0007044; 06-heading stage. AF159882. LOC_Os11g05470.	 Reproductive organ - Heading date	Os11g0152500	LOC_Os11g05470.1	GR:0100117			GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0010229 - inflorescence development, GO:0008429 - phosphatidylethanolamine binding	TO:0000557 - secondary branch number, TO:0000137 - days to heading	PO:0000230 - inflorescence meristem , PO:0009082 - spikelet floret , PO:0020148 - shoot apical meristem , PO:0020104 - leaf sheath , PO:0020039 - leaf lamina , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009005 - root , PO:0006322 - second order inflorescence branch , PO:0006321 - primary inflorescence branch 
6603	RCN2	Rcn2, OsRCN2	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 2	RICE CENTRORADIALIS 2	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 2		2	LOC_Os02g32950. Putative phosphatidylethanolamine-binding protein, Putative TFL1/CEN ortholog. TFL1/CEN-like gene. PO:0009049; inflorescence ; PO:0000230; inflorescence meristem ; PO:0009025; leaf ; PO:0020039; leaf lamina ; PO:0020104; leaf sheath ; PO:0009005; root ; PO:0006321; second order inflorescence branch ; PO:0020148; shoot apical meristem ; PO:0006322; third order inflorescence branch. GRO:0007048; 04-stem elongation stage ; GRO:0007189; panicle stage PA1 ; GRO:0007044; 06-heading stage. TO:0000784: inflorescence branch morphology trait.	 Reproductive organ - Heading date,  Reproductive organ - Panicle, Mode of branching	Os02g0531600	LOC_Os02g32950.1	GR:0100118			GO:0010229 - inflorescence development, GO:0008429 - phosphatidylethanolamine binding, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase	TO:0000674 - phytochemical compound content, TO:0000675 - ferulic acid content, TO:0000137 - days to heading, TO:0000630 - pedicel length, TO:0000557 - secondary branch number	PO:0020104 - leaf sheath , PO:0000230 - inflorescence meristem , PO:0006321 - primary inflorescence branch , PO:0006322 - second order inflorescence branch , PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0020039 - leaf lamina , PO:0020148 - shoot apical meristem 
6610	PH4	Ph4	PLANT HEIGHT 4	Plant height 4			12	QTL	 Vegetative organ - Culm,  Character as QTL - Plant growth activity								
6611	PH3	Ph3	PLANT HEIGHT 3	Plant height 3			6	QTL	 Vegetative organ - Culm,  Character as QTL - Plant growth activity								
6612	PH2	Ph2	PLANT HEIGHT 2	Plant height 2			5	QTL	 Vegetative organ - Culm,  Character as QTL - Plant growth activity								
6613	PH1	Ph1	PLANT HEIGHT 1	Plant height 1			1	QTL	 Vegetative organ - Culm,  Character as QTL - Plant growth activity								
6620	AE	ae	AMYLOSE EXTENDER 						 Seed - Physiological traits - Storage substances						GO:0000271 - polysaccharide biosynthetic process, GO:0007275 - multicellular organismal development		
6622	SSI	OsSSI, SSS 1, SSS1, SS1	SOLUBLE STARCH SYNTHASE I	"Starch synthase-I, \"Soluble starch synthase 1, chloroplastic/amyloplastic\", Starch synthase I"	SOLUBLE STARCH SYNTHASE I	ss1, ss1L	6	LOC_Os06g06560. EC=2.4.1.21 A2Y9M4(indica), Q0DEC8(japonica). PO:0009010; seed.  AY299404, D38221, AF165890, D16202, E06904. HQ712142, HQ712143, HQ712144, HQ712145, HQ712146, HQ712147, HQ712148, HQ712149.	 Seed - Physiological traits - Storage substances	Os06g0160700	LOC_Os06g06560.1	GR:0061111			GO:0009011 - starch synthase activity, GO:0009501 - amyloplast, GO:0019252 - starch biosynthetic process, GO:0009507 - chloroplast	TO:0000488 - seed composition based quality trait	PO:0009010 - seed 
6623	FLO5	OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5	FLOURY ENDOSPERM 5	SOLUBLE STARCH SYNTHASE III-2, SOLUBLE STARCH SYNTHASE IIIA, floury endosperm 5	SOLUBLE STARCH SYNTHASE IIIA	ss3a, b10, flo5-1, flo5-2	8	AY100469. LOC_Os08g09230. an RS (resistant starch) locus.	 Seed - Physiological traits - Storage substances	Os08g0191433	LOC_Os08g09230.2, LOC_Os08g09230.1	GR:0061114			GO:0005976 - polysaccharide metabolic process, GO:0009501 - amyloplast, GO:0009568 - amyloplast starch grain, GO:0019252 - starch biosynthetic process, GO:0009507 - chloroplast, GO:0009011 - starch synthase activity	TO:0000462 - gelatinization temperature, TO:0000488 - seed composition based quality trait, TO:0000667 - cooking or brewing quality	PO:0009010 - seed 
6707	CAO2	OsCAO2, OsCAO, CAO	CHLOROPHYLLIDE A OXYGENASE 2	chlorophyllide a oxygenase 2, Chlorophyllide a Oxygenase	CHLOROPHYLLIDE A OXYGENASE 2	cao-1, cao-2, cao-3, cao-4, cao-5	10	OsCAO in Morita et al. 2005.	 Biochemical character	Os10g0567100 	LOC_Os10g41760.1				GO:0046872 - metal ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0010277 - chlorophyllide a oxygenase activity		
6713	CIGR1	OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34	CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 1	Chitin-inducible gibberellin-responsive protein 1, Chitin-inducible GA-responsive protein, GRAS protein 34	CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1		7	Q69VG1. AY062209. LOC_Os07g36170.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0545800	LOC_Os07g36170.2, LOC_Os07g36170.1				GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0045449 - regulation of transcription, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
6714	CIGR2	OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36	CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 2	Chitin-inducible gibberellin-responsive protein 2, GA response modulator protein, GRAS protein 36	CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 2 		7	Q8GVE1. AY062210. LOC_Os07g39470.	 Tolerance and resistance - Disease resistance,  Other	Os07g0583600	LOC_Os07g39470.1				GO:0009814 - defense response, incompatible interaction, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009817 - defense response to fungus, incompatible interaction, GO:0045893 - positive regulation of transcription, DNA-dependent		
6715	CPD	CPD	CYCLOBUTAN PYRIMIDINE DIMER PHOTOLYASE	cyclobutane pyrimidine dimer photolyase gene	CYCLOBUTAN PYRIMIDINE DIMER PHOTOLYASE				 Biochemical character						GO:0000719 - photoreactive repair		
6722	EST14	EST14, Est14	ESTERASE 14	Esterase-14	ESTERASE 14		1		 Biochemical character			GR:0060318			GO:0016787 - hydrolase activity		
6724	EYE1	eye1	EARLY YELLOWING 1	early yellowing 1			3		 Vegetative organ - Leaf						GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence		
6725	FLO3	flo3	FLOURY ENDOSPERM 3	floury endosperm3			6		 Seed - Physiological traits - Storage substances					31.4	GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain		
6726	GLH8	glh8	GREEN LEAFHOPPER RESISTANCE 8	Green leafhopper resistance8, Green leafhopper resistance 8, green leafhopper resistance-8				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060383			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
6732	LOG1	LOG1, LOG, Log, log	LONELY GUY 1	LONELY GUY, Lonely Guy, lonely guy, Protein LONELY GUY, Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG	log1-1, log1-2, log1-3, log1-4, log1-5, log1-6, log-1, log-2, log-3, log-4, log-5, log-6	1	phosphoribohydrolase, cytokinin-activating enzyme, cytokinin-specific phosphoribohydrolase, cytokinin nucleoside 5'-monophosphate phosphoribohydrolase, cytokinin nucleotide phosphoribohydrolase. Q5ZC82. PO:0000230; inflorescence meristem ; PO:0000229; floral meristem ; PO:0009105; inflorescence lateral meristem. LOC_Os01g40630.	 Vegetative organ - Shoot apical meristem(SAM)	Os01g0588900	LOC_Os01g40630.3, LOC_Os01g40630.2, LOC_Os01g40630.1	GR:0101253			GO:0010073 - meristem maintenance, GO:0048509 - regulation of meristem development, GO:0010077 - maintenance of inflorescence meristem identity, GO:0010083 - regulation of vegetative meristem growth, GO:0009691 - cytokinin biosynthetic process, GO:0010076 - maintenance of floral meristem identity, GO:0009536 - plastid, GO:0010074 - maintenance of meristem identity, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0048832 - specification of organ number	TO:0000050 - inflorescence branching, TO:0000089 - panicle type, TO:0000017 - anatomy and morphology related trait, TO:0002659 - pistil number, TO:0002660 - cytokinin content	PO:0000229 - flower meristem , PO:0000230 - inflorescence meristem , PO:0009105 - inflorescence branch meristem 
6734	MIK	MIK	'KITAAKE MUTANT' MINUTE GRAIN				11		 Seed - Morphological traits						GO:0007275 - multicellular organismal development		
6735	NK1	NK1	NOTCHED KERNEL 1						 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development		
6738	ABA2	OsABA2	ZEAXANTHIN EPOXIDASE 2		ZEAXANTHIN EPOXIDASE 2				 Biochemical character						GO:0009540 - zeaxanthin epoxidase activity		
6742	ASA1	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D	ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 1	anthranilate synthase alpha subunit 1, feedback-insensitive a subunit of rice AS	ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 1		3	AB022602. JX276472, JX276473, JX276474. LOC_Os03g61120.	 Biochemical character	Os03g0826500	LOC_Os03g61120.1				GO:0000162 - tryptophan biosynthetic process, GO:0004049 - anthranilate synthase activity		
6743	ASA2	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2	ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 2	anthranilate synthase alpha subunit 2, Anthranilate synthase alpha 2 subunit	ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 2		3	AB022603.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os03g0264400	LOC_Os03g15780.5, LOC_Os03g15780.4, LOC_Os03g15780.2, LOC_Os03g15780.1				GO:0000162 - tryptophan biosynthetic process, GO:0002213 - defense response to insect, GO:0004049 - anthranilate synthase activity	TO:0000424 - brown planthopper resistance	
6744	CDPK11	OsCDPK11, OsCPK11	CALCIUM-DEPENDENT PROTEIN KINASE 11		CALCIUM-DEPENDENT PROTEIN KINASE 11		3	AC084296, AC087096. LOC_Os03g57510.	 Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0789000	LOC_Os03g57510.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009049 - inflorescence , PO:0009029 - stamen 
6749	HSP26	OsHSP26, Oshsp26, OsHSP26.7, HSP26.7	26 KDA HEAT SHOCK PROTEIN	26kDa heat shock protein	26 KDA HEAT SHOCK PROTEIN 		3	LOC_Os03g14180. AB020973. Q10P60.	 Tolerance and resistance - Stress tolerance	Os03g0245800	LOC_Os03g14180.1				GO:0009507 - chloroplast, GO:0042026 - protein refolding, GO:0009408 - response to heat, GO:0003773 - heat shock protein activity		
6750	HXK1	OsHXK1	HEXOKINASE-1	Hexokinase 1	HEXOKINASE-1		7	EC=2.7.1.1 Q8LH82. AP004668, DQ116383. GO:0140013: meiotic nuclear division.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os07g0446800	LOC_Os07g26540.1	GR:0061107			GO:0005524 - ATP binding, GO:0019318 - hexose metabolic process, GO:0004396 - hexokinase activity, GO:0006096 - glycolysis, GO:0051321 - meiotic cell cycle, GO:0009555 - pollen development		PO:0001007 - pollen development stage 
6752	MADS58	OsMADS58	MADS BOX GENE 58	MADS box gene58, MADS box gene 58, MADS-box transcription factor 58	MADS-BOX TRANSCRIPTION FACTOR 58	mads58	5	AB232157. Q2V0P1. LOC_Os05g11414. TO:1000024: palea morphology trait.	 Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os05g0203800	LOC_Os05g11414.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0030154 - cell differentiation, GO:0010229 - inflorescence development, GO:0048445 - carpel morphogenesis, GO:0010582 - floral meristem determinacy, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0003700 - transcription factor activity	TO:0000650 - lemma length, TO:0000207 - plant height, TO:0000622 - flower development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0000229 - flower meristem , PO:0007615 - flower development stage 
6754	MI	OsMI	SALT TOLERANCE (T)				3		 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress		
6755	NAS4	OsNAS4	NICOTIANAMINE SYNTHASE 4	rice nicotianamine synthase4	NICOTIANAMINE SYNTHASE 4				 Biochemical character						GO:0030410 - nicotianamine synthase activity, GO:0030418 - nicotianamine biosynthetic process		
6756	NAS5	OsNAS5	NICOTIANAMINE SYNTHASE 5	rice nicotianamine synthase5	NICOTIANAMINE SYNTHASE 5				 Biochemical character						GO:0030418 - nicotianamine biosynthetic process, GO:0030410 - nicotianamine synthase activity		
6757	NAS6	OsNAS6	NICOTIANAMINE SYNTHASE 6	rice nicotianamine synthase6	NICOTIANAMINE SYNTHASE 6				 Biochemical character						GO:0030418 - nicotianamine biosynthetic process, GO:0030410 - nicotianamine synthase activity		
6760	PIN6A	OsPIN6A, OsPIN6a	PIN PROTEIN 6A		PIN PROTEIN 6A		1										
6761	PIN6B	OsPIN6B, OsPIN6b	PIN PROTEIN 6B		PIN PROTEIN 6B		5										
6762	PIN1B	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1	PIN PROTEIN 1B	PIN PROTEIN 1A, the rice homolog of A. thaliana EIR1, PIN-FORMED 1b, PIN-formed 1, rice ethylene insensitive root 1	PIN PROTEIN 1B		2	LOC_Os02g50960 BR000827. D25054. AF056027. Q5SMQ9. a rice EIR1 (Arabidopsis ethylene insensitive root 1)-like gene.  OsPIN1a in Zou et al. 2014, Xu et al. 2014, Liu et al. 2018. GO:1901698: response to nitrogen compound. GO:0060918: auxin transport. OsPIN1 in Xu et al. 2005, Deshpande et al. 2015.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0743400	LOC_Os02g50960.2, LOC_Os02g50960.1				GO:0045177 - apical part of cell, GO:0009733 - response to auxin stimulus, GO:0005737 - cytoplasm, GO:0048449 - floral organ formation, GO:0009925 - basal plasma membrane, GO:0009921 - auxin efflux carrier complex, GO:0005215 - transporter activity, GO:0010358 - leaf shaping, GO:0006810 - transport, GO:0010051 - xylem and phloem pattern formation, GO:0009506 - plasmodesma, GO:0009505 - plant-type cell wall, GO:0055085 - transmembrane transport, GO:0048364 - root development, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0009638 - phototropism, GO:0009908 - flower development, GO:0048826 - cotyledon morphogenesis, GO:0009725 - response to hormone stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009926 - auxin polar transport, GO:0009630 - gravitropism, GO:0009735 - response to cytokinin stimulus, GO:0010229 - inflorescence development, GO:0010338 - leaf formation, GO:0048830 - adventitious root development	TO:0000257 - root branching, TO:0000017 - anatomy and morphology related trait, TO:0006022 - floral organ development trait, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity, TO:0002652 - root phototropism, TO:0002639 - shoot branching, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000329 - tillering ability, TO:0000401 - plant growth hormone sensitivity, TO:0000011 - nitrogen sensitivity	PO:0007520 - root development stage , PO:0007600 - floral organ differentiation stage , PO:0025488 - flower bract primordium , PO:0009037 - lemma , PO:0008013 - anther vascular system , PO:0000019 - gynoecium primordium , PO:0009066 - anther 
6763	PIN1C	PIN1B, OsPIN1B, OsPIN1b, OsPIN1c	PIN PROTEIN 1C	PIN PROTEIN 1B	PIN PROTEIN 1C		11	LOC_Os11g04190. BR000828. gi:32988390. OsPIN1b in Zou et al. 2014. GO:0060918: auxin transport.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0137000 	LOC_Os11g04190.1				GO:0055085 - transmembrane transport, GO:0009926 - auxin polar transport, GO:0048449 - floral organ formation, GO:0016021 - integral to membrane, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus	TO:0000167 - cytokinin sensitivity, TO:0006022 - floral organ development trait, TO:0000163 - auxin sensitivity	PO:0007600 - floral organ differentiation stage , PO:0009037 - lemma , PO:0025488 - flower bract primordium , PO:0008013 - anther vascular system , PO:0009066 - anther , PO:0000019 - gynoecium primordium 
6764	PIN1A	PIN1C, OsPIN1C, OsPIN1c, OsPIN1a	PIN PROTEIN 1A	PIN PROTEIN 1C	PIN PROTEIN 1A		6	LOC_Os06g12610. BR000829. gi:51535183. OsPIN1c in Zou et al. 2014. GO:1901698: response to nitrogen compound. GO:0060918: auxin transport.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0232300	LOC_Os06g12610.1				GO:0016021 - integral to membrane, GO:0009725 - response to hormone stimulus, GO:0009733 - response to auxin stimulus, GO:0055085 - transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0048449 - floral organ formation	TO:0000167 - cytokinin sensitivity, TO:0006022 - floral organ development trait, TO:0000163 - auxin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000011 - nitrogen sensitivity	PO:0025488 - flower bract primordium , PO:0007600 - floral organ differentiation stage , PO:0000019 - gynoecium primordium , PO:0009066 - anther , PO:0008013 - anther vascular system , PO:0009037 - lemma 
6765	PIN1D	OsPIN1D, OsPIN1d	PIN PROTEIN 1D		PIN PROTEIN 1D		12	BR000830. GO:0060918: auxin transport.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0133800	LOC_Os12g04000.1				GO:0009733 - response to auxin stimulus, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0009735 - response to cytokinin stimulus, GO:0048449 - floral organ formation	TO:0000167 - cytokinin sensitivity, TO:0006022 - floral organ development trait, TO:0000163 - auxin sensitivity	PO:0007600 - floral organ differentiation stage , PO:0009037 - lemma , PO:0025488 - flower bract primordium , PO:0008013 - anther vascular system , PO:0009066 - anther , PO:0000019 - gynoecium primordium 
6766	RAC2	OsRAC2, OsRac2	RAC/ROP-TYPE GTPASE 2	Rac-like GTP-binding protein 2, Rac/Rop-type GTPase 2	RAC/ROP-TYPE GTPASE 2		5	AB029509. Q68Y52.	 Biochemical character	Os05g0513800	LOC_Os05g43820.3, LOC_Os05g43820.2, LOC_Os05g43820.1				GO:0005525 - GTP binding, GO:0006952 - defense response, GO:0019898 - extrinsic to membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0005737 - cytoplasm	TO:0000112 - disease resistance	
6767	RAC4	OsRAC4, OsRac4, ROP4, OsRop4	RAC/ROP-TYPE GTPASE 4	Rac-like GTP-binding protein 4, GTPase protein ROP4, Rac/Rop-type GTPase 4	RAC/ROP-TYPE GTPASE 4		6	Q67VP4. AF380335. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0234200	LOC_Os06g12790.3, LOC_Os06g12790.1				GO:0005737 - cytoplasm, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0050832 - defense response to fungus, GO:0019898 - extrinsic to membrane	TO:0000074 - blast disease	
6769	ZIP3	OsZIP3	ZINC TRANSPORTER 3	zinc transporter 3, Zrt-Irt-like protein 3, Zinc-regulated transporter 3, zinc transporter OsZIP3	ZINC TRANSPORTER 3		4	LOC_Os04g52310. AY323915. Q7XLD4. GRO:0007139; A-vegetative stage. TO:0006059: cadmium content trait,	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0613000	LOC_Os04g52310.1	GR:0101279			GO:0010043 - response to zinc ion, GO:0046686 - response to cadmium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005739 - mitochondrion, GO:0006829 - zinc ion transport		PO:0006016 - leaf epidermis , PO:0020104 - leaf sheath 
6771	PDA	PDS1, PDS, OsPDS, Pds	PHYTOENE DESATURASE	"\"Phytoene dehydrogenase, chloroplastic/chromoplastic\", Phytoene desaturase"	PHYTOENE DESATURASE		3	EC=1.14.99.- A2XDA1(indica). Q0DUI8(japonica). AF049356. The albino phenotype of PDS mutant is caused by a lack of carotenoids.	 Biochemical character,  Coloration - Others	Os03g0184000	LOC_Os03g08570.1				GO:0009536 - plastid, GO:0016117 - carotenoid biosynthetic process, GO:0009509 - chromoplast, GO:0009507 - chloroplast, GO:0055114 - oxidation reduction, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
6787	RAD21	OsRAD21	DNA REPAIR PROTEIN RAD21	DNA repair protein RAD21	DNA REPAIR PROTEIN RAD21				 Biochemical character						GO:0003684 - damaged DNA binding		
6788	RAD23	OsRAD23	DNA REPAIR PROTEIN RAD23	Probable DNA repair protein RAD23	DNA REPAIR PROTEIN RAD23		9	DNA REPAIR PROTEIN. Q40742. U63530.	 Biochemical character	Os09g0407200	LOC_Os09g24200.2, LOC_Os09g24200.1				GO:0006289 - nucleotide-excision repair, GO:0003684 - damaged DNA binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus		
6789	RAD51A1	OsRAD51A1	DNA REPAIR PROTEIN RAD51A	DNA repair protein RAD51A1	DNA REPAIR PROTEIN RAD51A	rad51a1	11	AB08262, AB08261. GO:1904975: response to bleomycin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0615800	LOC_Os11g40150.1				GO:0008094 - DNA-dependent ATPase activity, GO:0005524 - ATP binding, GO:0006281 - DNA repair, GO:0003684 - damaged DNA binding		
6790	RAD51B	OsRAD51B, OsRad51B	DNA REPAIR PROTEIN RAD51B	DNA repair protein RAD51B	DNA REPAIR PROTEIN RAD51B	rad51b	5	LOC_Os05g03050. homologous recombination (HR)-related gene. GO:1904975: response to bleomycin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0121700 	LOC_Os05g03050.1				GO:0005524 - ATP binding, GO:0008094 - DNA-dependent ATPase activity, GO:0003677 - DNA binding, GO:0006302 - double-strand break repair, GO:0045002 - double-strand break repair via single-strand annealing, GO:0006259 - DNA metabolic process, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
6791	RAD6	OsRAD6	DNA REPAIR PROTEIN RAD6	DNA repair protein RAD6	DNA REPAIR PROTEIN RAD6				 Biochemical character						GO:0003684 - damaged DNA binding		
6792	RADA	OsRADA, OsRadA, OsLonP2, LONP2	DNA REPAIR PROTEIN RADA	DNA repair protein RADA, RadA-like protein, Lon protease 2	DNA REPAIR PROTEIN RADA		6	AB111516. LOC_Os06g05820. Lon Protease Pamily (Peptidase_S16; PF05362). http://rice.plantbiology.msu.edu/ca/gene_fams/27_79.shtml	 Biochemical character	Os06g0151600	LOC_Os06g05820.1				GO:0008094 - DNA-dependent ATPase activity, GO:0006281 - DNA repair, GO:0003684 - damaged DNA binding, GO:0005524 - ATP binding		
6793	RBBI2	RBBI2	BOWMAN-BIRK INHIBITOR 2		BOWMAN-BIRK INHIBITOR 2				 Biochemical character						GO:0004867 - serine-type endopeptidase inhibitor activity		
6794	RBBI3	RBBI3	BOWMAN-BIRK INHIBITOR 3		BOWMAN-BIRK INHIBITOR 3				 Biochemical character						GO:0004867 - serine-type endopeptidase inhibitor activity		
6795	RBCL	rbcL, rbcA, OsrbcL	RUBISCO LARGE SUBUNIT	Ribulose bisphosphate carboxylase large chain precursor, Ribulose bisphosphate carboxylase large chain, RuBisCO large subunit, ribulose 1, 5-bisphosphate carboxylase/oxygenase large chain, RUBISCO large chain, ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit	RUBISCO LARGE SUBUNIT		Pt	EC=4.1.1.39 P0C510. P0C511(indica). P0C512(japonica). D00207. X04789. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46127: Nip064 (cultivar Nipponbare), AY522331 (isolate PA64S). HE573284 (Oryza meridionalis), HE577876 (Oryza coarctata). X15901:CAA34004 (Japonica Group chloroplast genome). GU592207:ADD62840 (Japonica chloroplast comlete genome). L24073 (a chimeric rbcL). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character,  Tolerance and resistance - Stress tolerance		LOC_Osp1g00420	GR:0100360			GO:0000287 - magnesium ion binding, GO:0004497 - monooxygenase activity, GO:0009507 - chloroplast, GO:0055114 - oxidation reduction, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0019253 - reductive pentose-phosphate cycle, GO:0009536 - plastid, GO:0009573 - chloroplast ribulose bisphosphate carboxylase complex, GO:0009853 - photorespiration, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0010332 - response to gamma radiation	TO:0006001 - salt tolerance	
6797	RCS1	rcs1	CYSTEINE SYNTHASE 1	rice cysteine synthase (sulfer, nitrogen and light response)-1, rice cysteine synthase-1	CYSTEINE SYNTHASE 1		12	EC=2.5.1.47 (Cysteine synthase, CSase, O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase, OAS-TL). LOC_Os12g42980. Q9XEA6. PO:0009011; plant structure ; PO:0000003; whole plant.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0625000	LOC_Os12g42980.2, LOC_Os12g42980.1	GR:0061412			GO:0046688 - response to copper ion, GO:0006535 - cysteine biosynthetic process from serine, GO:0004124 - cysteine synthase activity, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding, GO:0016740 - transferase activity	TO:0000075 - light sensitivity, TO:0000164 - stress trait, TO:0000021 - copper sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
6798	RCS2	rcs2	CYSTEINE SYNTHASE 2	rice cysteine synthase (sulfer, nitrogen and light response)-2, rice cysteine synthase-2	CYSTEINE SYNTHASE 2		6	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0061413			GO:0016740 - transferase activity, GO:0006535 - cysteine biosynthetic process from serine, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding, GO:0004124 - cysteine synthase activity	TO:0000075 - light sensitivity, TO:0000164 - stress trait	PO:0000003 - whole plant , PO:0009011 - plant structure 
6799	RCS3	rcs3	CYSTEINE SYNTHASE 3	rice cysteine synthase (sulfer, nitrogen and light response)-3, rice cysteine synthase-3	CYSTEINE SYNTHASE 3		3	EC=2.5.1.47 (Cysteine synthase, CSase, O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase, OAS-TL). LOC_Os03g53650. Q9XEA8. AU095385, AU095386, AU164935, AU164936. PO:0009011; plant structure ; PO:0000003; whole plant.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0747800	LOC_Os03g53650.4, LOC_Os03g53650.3, LOC_Os03g53650.2, LOC_Os03g53650.1	GR:0061414			GO:0030170 - pyridoxal phosphate binding, GO:0005737 - cytoplasm, GO:0006535 - cysteine biosynthetic process from serine, GO:0004124 - cysteine synthase activity, GO:0016740 - transferase activity	TO:0000164 - stress trait, TO:0000432 - temperature response trait, TO:0000075 - light sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
6800	RCS4	rcs4	CYSTEINE SYNTHASE 4	rice cysteine synthase (sulfer, nitrogen and light response)-4, rice cysteine synthase-4	CYSTEINE SYNTHASE 4		6	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0061415			GO:0005737 - cytoplasm, GO:0016740 - transferase activity, GO:0030170 - pyridoxal phosphate binding, GO:0004124 - cysteine synthase activity, GO:0006535 - cysteine biosynthetic process from serine	TO:0000164 - stress trait, TO:0000075 - light sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
6811	S29	S29	HYBRID STERILITY 29				2		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
6816	SE1	SE1	HYBRID STERILITY E 1				3		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
6818	SH5		SHATTERING 5	Shattering-5			5	PO:0009010; seed. BEL1-type homeobox. one of the two rice REPLUMLESS orthologs.	 Seed - Physiological traits - Shattering,  Character as QTL - Yield and productivity	Os05g0455200	LOC_Os05g38120.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009809 - lignin biosynthetic process	TO:0000473 - grain shattering, TO:0000733 - lignin biosynthesis trait, TO:0000396 - grain yield	PO:0009010 - seed 
6819	SH6	SH6	SHATTERING 6				5		 Seed - Physiological traits - Shattering								
6820	TR1	TR1	TINY RICE 1				8		 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development		
6821	TS	TS	TEMPERATURE SENSITIVE				1		 Tolerance and resistance - Stress tolerance						GO:0009266 - response to temperature stimulus		
6823	TS1	TS1	TWISTED STEM 1				1		 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6824	TS2	TS2	TWISTED STEM 2				1		 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6825	GRH6	Grh6	GREEN RICE LEAFHOPPER RESISTANCE 6	Green rice leafhopper resistance-6			4	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0061477			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
6826	MAPK2	OsMAPK2, MPK2	MITOGEN-ACTIVATED PROTEIN KINASE 2	Mitogen-activated protein kinase 2, MAP kinase 2	MITOGEN-ACTIVATED PROTEIN KINASE 2		8	EC=2.7.11.24 Q5J4W4.	 Biochemical character	Os08g0157000	LOC_Os08g06060.1				GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding, GO:0004713 - protein tyrosine kinase activity, GO:0006468 - protein amino acid phosphorylation		
6827	MAPK4	OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7	MITOGEN-ACTIVATED PROTEIN KINASE 4	Mitogen-activated protein kinase 4, MAP kinase 4, Multiple stress-responsive MAP kinase 3	MITOGEN-ACTIVATED PROTEIN KINASE 4	mapk7	6	EC=2.7.11.24 Q5Z859. AF216316. AJ512642. AJ251330. OsMPK7 in Zhao et al. 2014 and Jalmi and Sinha 2016. MAPK7 in Mao et al. 2019.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0699400	LOC_Os06g48590.2, LOC_Os06g48590.1				GO:2000033 - regulation of seed dormancy, GO:0009723 - response to ethylene stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009611 - response to wounding, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0006950 - response to stress, GO:0009411 - response to UV, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide	TO:0000253 - seed dormancy, TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0000175 - bacterial blight disease resistance	
6828	MAPK3	OsMAPK3	MITOGEN-ACTIVATED PROTEIN KINASE 3		MITOGEN-ACTIVATED PROTEIN KINASE 3				 Biochemical character						GO:0004707 - MAP kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding		
6840	PITQ5	Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5	PYRICULARIA ORYZAE RESISTANCE TQ 5	Magnaporthe grisea resistance from Teqing, Blast resistance tq5			2	PO:0009025; leaf. Original line is Tequing (Indica). 150.5-157.9 cM.	 Tolerance and resistance - Disease resistance			GR:0060664			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
6841	PIX	Pi-x(t), Pi-x1	PYRICULARIA ORYZAE RESISTANCE X	Magnaporthe grisea resistance, Blast resistance			2		 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6850	ACS2	OsACS2, Os-ACS2	ACC SYNTHASE 2	ACC synthase 2, 1-aminocyclopropane-1-carboxylic acid synthase 2	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2		4	U65701. LOC_Os04g48850.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0578000	LOC_Os04g48850.1				GO:0009733 - response to auxin stimulus, GO:0046687 - response to chromate, GO:0009723 - response to ethylene stimulus, GO:0008631 - induction of apoptosis by oxidative stress, GO:0009611 - response to wounding, GO:0009693 - ethylene biosynthetic process, GO:0050832 - defense response to fungus, GO:0010446 - response to alkalinity, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0046689 - response to mercury ion, GO:0009753 - response to jasmonic acid stimulus, GO:0051607 - defense response to virus, GO:0009612 - response to mechanical stimulus	TO:0000074 - blast disease, TO:0000034 - chromium sensitivity, TO:0000163 - auxin sensitivity, TO:0000386 - rice ragged stunt virus resistance, TO:0000148 - viral disease resistance, TO:0000481 - alkali sensitivity	PO:0009005 - root 
6851	ACS4	OsACS4, OS-ACS4	ACC SYNTHASE 4	ACC synthase 4	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4		5	U65703.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0319200	LOC_Os05g25490.1				GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0009693 - ethylene biosynthetic process		
6852	ACS5	OsACS5, OS-ACS5, OsBphi008a	ACC SYNTHASE 5	ACC synthase 5	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 5		1	U65704.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0192900	LOC_Os01g09700.1				GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0009693 - ethylene biosynthetic process, GO:0010446 - response to alkalinity	TO:0000481 - alkali sensitivity	PO:0009005 - root 
6853	ALDH1A	ALDH1A	ALDEHYDE DEHYDROGENASE	aldehyde dehydrogenase	ALDEHYDE DEHYDROGENASE				 Biochemical character						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors		
6854	ALDH2B	OsALDH2B	ALDEHYDE DEHYDROGENASE 2B	aldehyde dehydrogenase 2B	ALDEHYDE DEHYDROGENASE 2B			Rice ALDH2a and ALDH2b genes are orthologues of maize mitochondrial ALDH genes, rf2b and rf2a, respectively (Tsuji et al. 2003).	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0030912 - response to deep water	TO:0000286 - submergence sensitivity	
6855	RF2D	RF2D	ALDEHYDE DEHYDROGENASE		ALDEHYDE DEHYDROGENASE				 Biochemical character						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors		
6856	ALDH1	ALDH1	ALDEHYDE DEHYDROGENASE	aldehyde dehydrogenase	ALDEHYDE DEHYDROGENASE				 Biochemical character						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors		
6857	ALDH	ALDH	ALDEHYDE DEHYDROGENASE	aldehyde dehydrogenase	ALDEHYDE DEHYDROGENASE				 Biochemical character						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors		
6858	AMY3D	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3	ALPHA-AMYLASE 3D	Alpha-amylase3D, Alpha-amylase isozyme 3D precursor, Alpha-amylase isozyme 3D, Alpha-amylase-3D, Amylase-8	ALPHA-AMYLASE 3D		8	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. M59351. P27933. M24287. AU166291, AU166292, AU068387, AU166535. LOC_Os08g36910.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os08g0473900	LOC_Os08g36910.3, LOC_Os08g36910.2, LOC_Os08g36910.1	GR:0060047			GO:0005987 - sucrose catabolic process, GO:0009413 - response to flooding, GO:0005509 - calcium ion binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0004556 - alpha-amylase activity, GO:0005983 - starch catabolic process	TO:0000432 - temperature response trait, TO:0000280 - seedling vigor, TO:0000114 - flooding related trait, TO:0000168 - abiotic stress trait, TO:0000253 - seed dormancy	
6859	AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4	ALPHA-AMYLASE 3E	Alpha-amylase3E, Alpha-amylase isozyme 3E precursor, Alpha-amylase isozyme 3E, Alpha-amylase-3E, Amylase-9, Alpha-amylase-3D	ALPHA-AMYLASE 3E		8	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. M59352. P27934.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0473600	LOC_Os08g36900.2, LOC_Os08g36900.1	GR:0061336			GO:0005987 - sucrose catabolic process, GO:0004556 - alpha-amylase activity, GO:0051775 - response to redox state, GO:0005509 - calcium ion binding, GO:0005983 - starch catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0001666 - response to hypoxia, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000015 - oxygen sensitivity	
6860	AMY3A	Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129	ALPHA-AMYLASE 3A	Alpha-amylase3A, Alpha-amylase isozyme 3A precursor, Alpha-amylase isozyme 3A, Alpha-amylase-3A, Amylase-5, endosperm-specific gene 129	ALPHA-AMYLASE 3A		9	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. P27932. X56336. LOC_Os09g28400.	 Biochemical character	Os09g0457400	LOC_Os09g28400.1	GR:0060046			GO:0004556 - alpha-amylase activity, GO:0005975 - carbohydrate metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005509 - calcium ion binding, GO:0005983 - starch catabolic process, GO:0005987 - sucrose catabolic process		
6861	AMY3B	Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C	ALPHA-AMYLASE 3B	Alpha-amylase3B, Alpha-amylase isozyme 3B precursor, Alpha-amylase isozyme 3B, Alpha-amylase-3B, Amylase-6, Alpha-amylase-3A	ALPHA-AMYLASE 3B		9	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. P27937. X56337.	 Biochemical character	Os09g0457600	LOC_Os09g28420.1	GR:0061334			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005983 - starch catabolic process, GO:0005987 - sucrose catabolic process, GO:0032940 - secretion by cell, GO:0005509 - calcium ion binding, GO:0005975 - carbohydrate metabolic process, GO:0004556 - alpha-amylase activity		
6866	DGL1	DGL1	DWARF AND GLADIUS LEAF 1						 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6881	EIL1A	OsEIL1a	ETHYLENE INSENSITIVE-LIKE GENE 1A	EIN3-like protein 1A	EIN3-LIKE PROTEIN 1A 			ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3.	 Other						GO:0009723 - response to ethylene stimulus, GO:0003700 - transcription factor activity		
6882	EIL1B	OsEIL1b	ETHYLENE INSENSITIVE-LIKE GENE 1B	EIN3-like protein 1B	EIN3-LIKE PROTEIN 1B 			ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3	 Other						GO:0009723 - response to ethylene stimulus, GO:0003700 - transcription factor activity		
6883	RAD21	OsRad21, OsRAD21-1	RAD21 PROTEIN	Rad21 protein	RAD21 PROTEIN		1	ORTHOLOGUE OF YEAST REC8, Rad21/Rec8-like protein. AY288943. AF140489.	 Biochemical character	Os01g0897800 	LOC_Os01g67250.2, LOC_Os01g67250.1				GO:0000228 - nuclear chromosome		
6884	RAD21-2	OsRad21-2	RAD21-2 PROTEIN	Rad21-2 protein	RAD21-2 PROTEIN		4	ORTHOLOGUE OF YEAST REC8. Rad21/Rec8-like protein, similar to Rad21/Rec8 cohesin subunit. AY371047.	 Biochemical character	Os04g0488100	LOC_Os04g41110.2, LOC_Os04g41110.1				GO:0000228 - nuclear chromosome		
6885	RAD21-3	OsRad21-3	RAD21-3 PROTEIN	Rad21-3 protein	RAD21-3 PROTEIN		8	ORTHOLOGUE OF YEAST REC8. AY371048. Rad21/Rec8-like protein.	 Biochemical character,  Reproductive organ	Os08g0266700	LOC_Os08g16610.1				GO:0000228 - nuclear chromosome		PO:0000084 - plant sperm cell 
6886	RAD21-4	OsRad21-4, REC8, OsREC8, OsRAD21-4	RAD21-4 PROTEIN	Rad21-4 protein, RECombination 8	RAD21-4 PROTEIN	Osrec8, Osrec8-1, Osrec8-2	5	ORTHOLOGUE OF YEAST REC8. AY371049. Rad21/Rec8-like protein.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0580500	LOC_Os05g50410.2, LOC_Os05g50410.1				GO:0000228 - nuclear chromosome		
6887	SPL1	OsSPL1	RICE SQUAMOSA PROMOTER-BINDING-LIKE 1	Squamosa promoter-binding-like protein 1	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 1		1	Q9LGU7.	 Other	Os01g0292900	LOC_Os01g18850.4, LOC_Os01g18850.3, LOC_Os01g18850.2, LOC_Os01g18850.1				GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding		
6888	SPL2	OsSPL2	RICE SQUAMOSA PROMOTER-BINDING-LIKE 2	Squamosa promoter-binding-like protein 2	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2		1	LOC_Os01g69830. Q0JGI1.	 Other	Os01g0922600	LOC_Os01g69830.1				GO:0045449 - regulation of transcription, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		
6889	SPL4	OsSPL4	RICE SQUAMOSA PROMOTER-BINDING-LIKE 4	Squamosa promoter-binding-like protein 4	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4		2	Q6H509. HQ858810. SBP transcription factor.	 Other	Os02g0174100	LOC_Os02g07780.2, LOC_Os02g07780.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription		
6890	SPL7	OsSPL7	RICE SQUAMOSA PROMOTER-BINDING-LIKE 7	Squamosa promoter-binding-like protein 7	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7	spl7-1	4	Q01JD1(indica), Q7XT42(japonica). LOC_Os04g46580. OsSPL7 is a target of miR156f.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching,  Other	Os04g0551500	LOC_Os04g46580.1				GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding	TO:0000050 - inflorescence branching, TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000207 - plant height	
6891	LG1	SPL8, OsSPL8, OsLG1	LIGULELESS 1	Squamosa promoter-binding-like protein 8, Protein LIGULELESS 1, OsLIGULELESS1	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8	oslg1, oslg1-1, oslg1-2	4	LOC_Os04g56170. Q01KM7(indica), Q7XPY1(japonica). AB776991(O. sativa),  AB776992(O. rufipogon W630). TO:0000847: panicle anatomy and morphology trait.	 Reproductive organ - Inflorescence,  Other	Os04g0656500	LOC_Os04g56170.1				GO:0008270 - zinc ion binding, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding		
6892	SPL9	OsSPL9	RICE SQUAMOSA PROMOTER-BINDING-LIKE 9	Squamosa promoter-binding-like protein 9	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 9	osspl9	5	Q6I576.	 Other	Os05g0408200	LOC_Os05g33810.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0006350 - transcription, GO:0045449 - regulation of transcription		
6893	SPL10	OsSPL10	RICE SQUAMOSA PROMOTER-BINDING-LIKE 10	Squamosa promoter-binding-like protein 10	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 10		6	A2YFT9(indica), Q0DAE8(japonica).	 Other	Os06g0659100	LOC_Os06g44860.1				GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005634 - nucleus		
6894	SPL11	OsSPL11	RICE SQUAMOSA PROMOTER-BINDING-LIKE 11	Squamosa promoter-binding-like protein 11	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 11		6	Q653Z5.	 Other	Os06g0663500	LOC_Os06g45310.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription		
6895	SPL12	OsSPL12	RICE SQUAMOSA PROMOTER-BINDING-LIKE 12	SQUAMOSA Promoter-Binding Protein-Like	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 12		6	A2YGR5.	 Other	Os06g0703500	LOC_Os06g49010.6, LOC_Os06g49010.5, LOC_Os06g49010.4, LOC_Os06g49010.3, LOC_Os06g49010.2, LOC_Os06g49010.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0006350 - transcription		
6896	GLW7 	OsSPL13, SPL13	GRAIN LENGTH AND WEIGHT ON CHROMOSOME 7 	Squamosa promoter-binding-like protein 13, RICE SQUAMOSA PROMOTER-BINDING-LIKE 13, GRAIN LENGTH AND WIEIGHT ON CHROMOSOME 7	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 13	glw7	7	Q6Z461. LOC_Os07g32170. KT899581, KT899582, LT159866-LT159966.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Other	Os07g0505200	LOC_Os07g32170.2, LOC_Os07g32170.1				GO:0030307 - positive regulation of cell growth, GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding	TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000590 - grain weight	
6899	SPL15	OsSPL15	RICE SQUAMOSA PROMOTER-BINDING-LIKE 15	Squamosa promoter-binding-like protein 15	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 15		8	A2YX04(indica), Q6Z8M8(japonica).	 Other	Os08g0513700	LOC_Os08g40260.1				GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0006350 - transcription		
6900	GW8	SPL16, OsSPL16, SLP1, qGW8	GRAIN-WIDTH 8	Squamosa promoter-binding-like protein 16, SQUAMOSA promoter-binding-like 16, stunted lemma palea 1, grain-width 8	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 16	slp1, gw8, GW8HJX74, gw8Basmati, GW8-A, GW8-B	8	Q6YZE8. an SBP-domain transcription factor. 	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os08g0531600	LOC_Os08g41940.1				GO:0008284 - positive regulation of cell proliferation, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription	TO:0002731 - grain length to width ratio, TO:0000734 - grain length, TO:0002661 - seed maturation, TO:0002730 - grain shape, TO:0000396 - grain yield, TO:0000162 - seed quality, TO:0000402 - grain width, TO:0000397 - grain size	
6901	WAK1	OsWAK1, WAK-1	WALL-ASSOCIATED KINASE GENE 1	Wall-Associated kinase 1	WALL-ASSOCIATED KINASE 1		1	AU030772.	 Biochemical character	Os01g0136400	LOC_Os01g04409.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6902	WAK2	OsWAK2	WALL-ASSOCIATED KINASE GENE 2	Wall-Associated kinase 2	WALL-ASSOCIATED KINASE 2		1		 Biochemical character	Os01g0136800	LOC_Os01g04450.1				GO:0030247 - polysaccharide binding, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6903	WAK3	OsWAK3	WALL-ASSOCIATED KINASE GENE 3		WALL-ASSOCIATED KINASE 3		1	pseudo gene.	 Biochemical character								
6904	WAK4	OsWAK4, OsRLCK32, RLCK32	WALL-ASSOCIATED KINASE GENE 4	Receptor-like Cytoplasmic Kinase 32	WALL-ASSOCIATED KINASE 4		1	LOC_Os01g20900.	 Biochemical character,  Seed,  Tolerance and resistance - Disease resistance	Os01g0310800	LOC_Os01g20900.7, LOC_Os01g20900.6, LOC_Os01g20900.5, LOC_Os01g20900.4, LOC_Os01g20900.3, LOC_Os01g20900.2, LOC_Os01g20900.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance	PO:0001170 - seed development stage , PO:0009010 - seed 
6905	WAK5	OsWAK5	WALL-ASSOCIATED KINASE GENE 5		WALL-ASSOCIATED KINASE 5		1	AU100894, C27886.	 Biochemical character	Os01g0363900	LOC_Os01g26160.2, LOC_Os01g26160.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		
6906	WAK6	OsWAK6	WALL-ASSOCIATED KINASE GENE 6		WALL-ASSOCIATED KINASE 6		1	pseudo gene.	 Biochemical character								
6908	WAK7/8	OsWAK7/8, OsWAK7, OsWAK8	WALL-ASSOCIATED KINASE GENE 7/8		WALL-ASSOCIATED KINASE 7/8		1	C24950. OsWAK7 was merged with OsWAK8.	 Biochemical character	Os01g0364800	LOC_Os01g26280.1, LOC_Os01g26270.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		
6909	WAK9	OsWAK9	WALL-ASSOCIATED KINASE GENE 9		WALL-ASSOCIATED KINASE 9		1	pseudo gene.	 Biochemical character								
6910	WAK10	OsWAK10	WALL-ASSOCIATED KINASE GENE 10		WALL-ASSOCIATED KINASE 10		1	AU082462, C22642, AU174609, D48660, AU174608, AU181399.	 Biochemical character	Os01g0689900	LOC_Os01g49529.4, LOC_Os01g49529.3, LOC_Os01g49529.2, LOC_Os01g49529.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6911	WAK11	OsWAK11	WALL-ASSOCIATED KINASE GENE 11		WALL-ASSOCIATED KINASE 11		2	D22099.	 Biochemical character	Os02g0111600	LOC_Os02g02120.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
6912	WAK14	OsWAK14	WALL-ASSOCIATED KINASE GENE 14		WALL-ASSOCIATED KINASE 14		2	OJ1643_A10.5	 Biochemical character						GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6913	WAK15	OsWAK15, OsRLCK76, RLCK76	WALL-ASSOCIATED KINASE GENE 15	Receptor-like Cytoplasmic Kinase 76	WALL-ASSOCIATED KINASE 15		2	LOC_Os02g42160.	 Biochemical character	Os02g0632900	LOC_Os02g42160.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
6914	WAK16	OsWAK16, OsRLCK77, RLCK77	WALL-ASSOCIATED KINASE GENE 16	Receptor-like Cytoplasmic Kinase 77	WALL-ASSOCIATED KINASE 16		2	LOC_Os02g42190.	 Biochemical character	Os02g0633066	LOC_Os02g42190.1				GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
6915	WAK17	OsWAK17	WALL-ASSOCIATED KINASE GENE 17		WALL-ASSOCIATED KINASE 17		2	OJ1111_E07.2	 Biochemical character								
6916	WAK18	OsWAK18	WALL-ASSOCIATED KINASE GENE 18		WALL-ASSOCIATED KINASE 18		2		 Biochemical character	Os02g0807200 					GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
6920	WAK19	OsWAK19	WALL-ASSOCIATED KINASE GENE 19		WALL-ASSOCIATED KINASE 19		2	LOC_Os02g56350.	 Biochemical character		LOC_Os02g56350				GO:0016301 - kinase activity		
6921	WAK20	OsWAK20	WALL-ASSOCIATED KINASE GENE 20		WALL-ASSOCIATED KINASE 20		2		 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0807800	LOC_Os02g56370.1				GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6922	WAK21	OsWAK21	WALL-ASSOCIATED KINASE GENE 21		WALL-ASSOCIATED KINASE 21		2		 Biochemical character	Os02g0807900	LOC_Os02g56380.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6923	WAK22	OsWAK22	WALL-ASSOCIATED KINASE GENE 22		WALL-ASSOCIATED KINASE 22		2		 Biochemical character						GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
6924	WAK23	OsWAK23	WALL-ASSOCIATED KINASE GENE 23		WALL-ASSOCIATED KINASE 23		2	CA760609.	 Biochemical character	Os02g0808300	LOC_Os02g56420.1				GO:0030247 - polysaccharide binding, GO:0016301 - kinase activity		
6925	WAK24	OsWAK24	WALL-ASSOCIATED KINASE GENE 24		WALL-ASSOCIATED KINASE 24		2		 Biochemical character	Os02g0811200	LOC_Os02g56630.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6926	WAK25	OsWAK25	WALL-ASSOCIATED KINASE GENE 25	Wall-Associated Kinase 25	WALL-ASSOCIATED KINASE 25		3	CB640326. LOC_Os03g12470.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0225700	LOC_Os03g12470.1				GO:0030247 - polysaccharide binding, GO:0009751 - response to salicylic acid stimulus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding	TO:0000255 - sheath blight disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000356 - brown spot disease resistance, TO:0000074 - blast disease	
6927	WAK27	OsWAK27	WALL-ASSOCIATED KINASE GENE 27		WALL-ASSOCIATED KINASE 27		3		 Biochemical character								
6928	WAK28	OsWAK28	WALL-ASSOCIATED KINASE GENE 28		WALL-ASSOCIATED KINASE 28		3	CB631820.	 Biochemical character	Os03g0841100	LOC_Os03g62430.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
6929	WAK29	OsWAK29	WALL-ASSOCIATED KINASE GENE 29		WALL-ASSOCIATED KINASE 29		4		 Biochemical character	Os04g0127500	LOC_Os04g03830.1				GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding		
6930	WAK30/31	OsWAK30, OsWAK30/OsWAK31, OsWAK31	WALL-ASSOCIATED KINASE GENE 30/31		WALL-ASSOCIATED KINASE 30/31		4	OsWAK30 was merged with OsWAK31. 	 Biochemical character	Os04g0220300	LOC_Os04g14304.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
6932	WAK32	OsWAK32	WALL-ASSOCIATED KINASE GENE 32		WALL-ASSOCIATED KINASE 32		4	LOC_Os04g24220.3 CB676084.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0307500	LOC_Os04g24220.3, LOC_Os04g24220.2, LOC_Os04g24220.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0051607 - defense response to virus, GO:0005524 - ATP binding	TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance	
6933	WAK34	OsWAK34	WALL-ASSOCIATED KINASE GENE 34		WALL-ASSOCIATED KINASE 34		4		 Biochemical character						GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004672 - protein kinase activity		
6934	WAK33	OsWAK33	WALL-ASSOCIATED KINASE GENE 33		WALL-ASSOCIATED KINASE 33		4		 Biochemical character	Os04g0286300	LOC_Os04g21820.1				GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6935	WAK35	OsWAK35	WALL-ASSOCIATED KINASE GENE 35		WALL-ASSOCIATED KINASE 35		4	AK068752, AK070011, CF322435/Os04g0308100,  AK070011, AK100568/Os04g0308000.	 Biochemical character	Os04g0308100/Os04g0308000					GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6936	WAK36	OsWAK36, OsRLCK140, RLCK140	WALL-ASSOCIATED KINASE GENE 36	Receptor-like Cytoplasmic Kinase 140	WALL-ASSOCIATED KINASE 36		4	LOC_Os04g24510.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0310400	LOC_Os04g24510.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
6937	WAK38	OsWAK38	WALL-ASSOCIATED KINASE GENE 38		WALL-ASSOCIATED KINASE 38		4	CB632726. OSJNBa0081G05.15	 Biochemical character						GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		
6938	WAK41	OsWAK41	WALL-ASSOCIATED KINASE GENE 41		WALL-ASSOCIATED KINASE 41		4	OSJNBa0016N04.2	 Biochemical character						GO:0030247 - polysaccharide binding		
6939	WAK43	OsWAK43	WALL-ASSOCIATED KINASE GENE 43		WALL-ASSOCIATED KINASE 43		4	CA763211.	 Biochemical character	Os04g0368000 	LOC_Os04g29960.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding		
6940	WAK44	OsWAK44	WALL-ASSOCIATED KINASE GENE 44		WALL-ASSOCIATED KINASE 44		4	OSJNBa0016N04.12	 Biochemical character						GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
6941	WAK45	OsWAK45, OsRLCK143, RLCK143	WALL-ASSOCIATED KINASE GENE 45	Receptor-like Cytoplasmic Kinase 143	WALL-ASSOCIATED KINASE 45		4	CB628328, CB668831. LOC_Os04g30010.	 Biochemical character,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os04g0368800 	LOC_Os04g30010.1				GO:0030247 - polysaccharide binding, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
6942	WAK46	OsWAK46	WALL-ASSOCIATED KINASE GENE 46		WALL-ASSOCIATED KINASE 46		4		 Biochemical character	Os04g0370100	LOC_Os04g30160.1				GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6943	WAK47	OsWAK47, OsRLCK147, RLCK147	WALL-ASSOCIATED KINASE GENE 47	Receptor-like Cytoplasmic Kinase 147	WALL-ASSOCIATED KINASE 47		4	LOC_Os04g30260.	 Biochemical character	Os04g0371100	LOC_Os04g30260.1				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6944	WAK48	OsWAK48	WALL-ASSOCIATED KINASE GENE 48		WALL-ASSOCIATED KINASE 48		4		 Biochemical character	Os04g0371275	LOC_Os04g30280.1				GO:0030247 - polysaccharide binding		
6945	WAK49	OsWAK49	WALL-ASSOCIATED KINASE GENE 49		WALL-ASSOCIATED KINASE 49		4		 Biochemical character	Os04g0372100	LOC_Os04g30370.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6946	WAK51	OsWAK51	WALL-ASSOCIATED KINASE GENE 51		WALL-ASSOCIATED KINASE 51		4		 Biochemical character	Os04g0517700	LOC_Os04g43730.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6947	WAK52	OsWAK52	WALL-ASSOCIATED KINASE GENE 52		WALL-ASSOCIATED KINASE 52		4	OSJNba0093F12.18	 Biochemical character						GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6948	WAK53	OsWAK53, OsWAK53a	WALL-ASSOCIATED KINASE GENE 53		WALL-ASSOCIATED KINASE 53		4		 Biochemical character	Os04g0599000	LOC_Os04g51050.2, LOC_Os04g51050.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6949	WAK54	OsWAK54	WALL-ASSOCIATED KINASE GENE 54		WALL-ASSOCIATED KINASE 54		4	OSJNBb0059K02.18	 Biochemical character						GO:0030247 - polysaccharide binding		
6950	WAK55	OsWAK55	WALL-ASSOCIATED KINASE GENE 55		WALL-ASSOCIATED KINASE 55		4	LOC_Os04g55760. targeted by OS_AGO1_sRNA87 (Qin et al. 2017).	 Biochemical character	Os04g0651500	LOC_Os04g55760.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
6951	WAK61	OsWAK61	WALL-ASSOCIATED KINASE GENE 61		WALL-ASSOCIATED KINASE 61		6	CA755270. P0535G04.24	 Biochemical character						GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
6952	WAK62	OsWAK62	WALL-ASSOCIATED KINASE GENE 62		WALL-ASSOCIATED KINASE 62		6	OSJNBa0033B09.26	 Biochemical character						GO:0016301 - kinase activity		
6953	WAK63	OsWAK63	WALL-ASSOCIATED KINASE GENE 63		WALL-ASSOCIATED KINASE 63		6		 Biochemical character	Os06g0170100	LOC_Os06g07330.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
6954	WAK64	OsWAK64	WALL-ASSOCIATED KINASE GENE 64		WALL-ASSOCIATED KINASE 64		6		 Biochemical character	Os06g0705200	LOC_Os06g49170.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding		
6955	WAK65	OsWAK65	WALL-ASSOCIATED KINASE GENE 65		WALL-ASSOCIATED KINASE 65		6		 Biochemical character	Os06g0706600	LOC_Os06g49260.1				GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6956	WAK66	OsWAK66	WALL-ASSOCIATED KINASE GENE 66		WALL-ASSOCIATED KINASE 66		7	pseudo gene.	 Biochemical character								
6957	WAK67	OsWAK67	WALL-ASSOCIATED KINASE GENE 67		WALL-ASSOCIATED KINASE 67		7	pseudo gene.	 Biochemical character								
6958	WAK68	OsWAK68	WALL-ASSOCIATED KINASE GENE 68		WALL-ASSOCIATED KINASE 68		7	pseudo gene.	 Biochemical character								
6959	WAK69	OsWAK69	WALL-ASSOCIATED KINASE GENE 69		WALL-ASSOCIATED KINASE 69		7		 Biochemical character								
6960	WAK70	OsWAK70, OsRLCK230, RLCK230	WALL-ASSOCIATED KINASE GENE 70	Receptor-like Cytoplasmic Kinase 230	WALL-ASSOCIATED KINASE 70		7	LOC_Os07g31210.	 Biochemical character	Os07g0494300	LOC_Os07g31210.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6961	WAK71	OsWAK71, OsRLCK229, RLCK229	WALL-ASSOCIATED KINASE GENE 71	Receptor-like Cytoplasmic Kinase 229	WALL-ASSOCIATED KINASE 71		7	LOC_Os07g31190.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0493800 	LOC_Os07g31190.1				GO:0004713 - protein tyrosine kinase activity, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease	
6962	WAK72	OsWAK72, OsRLCK228, RLCK228	WALL-ASSOCIATED KINASE GENE 72	Receptor-like Cytoplasmic Kinase 228	WALL-ASSOCIATED KINASE 72		7	CA756443. LOC_Os07g31130.	 Biochemical character	Os07g0493200	LOC_Os07g31130.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6963	WAK73	OsWAK73	WALL-ASSOCIATED KINASE GENE 73		WALL-ASSOCIATED KINASE 73		8		 Biochemical character	Os08g0501200	LOC_Os08g39180.1, LOC_Os08g39174.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6964	WAK74	OsWAK74	WALL-ASSOCIATED KINASE GENE 74		WALL-ASSOCIATED KINASE 74		8	CA763126. OJ1345_D02.15	 Biochemical character						GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding		
6965	WAK75	OsWAK75	WALL-ASSOCIATED KINASE GENE 75		WALL-ASSOCIATED KINASE 75		8	OJ1345_D02.17	 Biochemical character						GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
6966	WAK76	OsWAK76	WALL-ASSOCIATED KINASE GENE 76		WALL-ASSOCIATED KINASE 76		8	CB677466, CB628072.	 Biochemical character	Os08g0501700	LOC_Os08g39240.2, LOC_Os08g39240.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
6967	WAK77	OsWAK77, OsRLCK252, RLCK252	WALL-ASSOCIATED KINASE GENE 77	Receptor-like Cytoplasmic Kinase 252	WALL-ASSOCIATED KINASE 77		8	LOC_Os08g27780.	 Biochemical character,  Reproductive organ - panicle	Os08g0365500	LOC_Os08g27780.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
6968	WAK78	OsWAK78	WALL-ASSOCIATED KINASE GENE 78		WALL-ASSOCIATED KINASE 78		8	OJ1484_G09.127	 Biochemical character						GO:0030247 - polysaccharide binding, GO:0016301 - kinase activity		
6969	WAK79	OsWAK79	WALL-ASSOCIATED KINASE GENE 79		WALL-ASSOCIATED KINASE 79		9		 Biochemical character								
6970	WAK80	OsWAK80	WALL-ASSOCIATED KINASE GENE 80		WALL-ASSOCIATED KINASE 80		9	pseudo gene.	 Biochemical character								
6971	WAK81	OsWAK81, OsRLCK273, RLCK273	WALL-ASSOCIATED KINASE GENE 81	Receptor-like Cytoplasmic Kinase 273	WALL-ASSOCIATED KINASE 81		9	LOC_Os09g29520.	 Biochemical character	Os09g0471400	LOC_Os09g29520.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
6972	WAK82	OsWAK82, OsRLCK274, RLCK274	WALL-ASSOCIATED KINASE GENE 82	Receptor-like Cytoplasmic Kinase 274	WALL-ASSOCIATED KINASE 82		9	AU055937, AU032343. LOC_Os09g29540.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0471500	LOC_Os09g29540.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0009607 - response to biotic stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000236 - crop damage resistance, TO:0000179 - biotic stress trait	
6973	WAK83	OsWAK83	WALL-ASSOCIATED KINASE GENE 83		WALL-ASSOCIATED KINASE 83		9	pseudo gene.	 Biochemical character								
6974	WAK84	OsWAK84	WALL-ASSOCIATED KINASE GENE 84		WALL-ASSOCIATED KINASE 84		9		 Biochemical character	Os09g0471600	LOC_Os09g29584.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6975	WAK85	OsWAK85, YK10	WALL-ASSOCIATED KINASE GENE 85		WALL-ASSOCIATED KINASE 85		9	AF230499.	 Biochemical character	Os09g0471800	LOC_Os09g29600.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding		
6976	WAK86	OsWAK86	WALL-ASSOCIATED KINASE GENE 86		WALL-ASSOCIATED KINASE 86		9	pseudo gene.	 Biochemical character								
6977	WAK88	OsWAK88	WALL-ASSOCIATED KINASE GENE 88		WALL-ASSOCIATED KINASE 88		9	pseudo gene.	 Biochemical character								
6979	WAK89A	OsWAK89a	WALL-ASSOCIATED KINASE GENE 89A		WALL-ASSOCIATED KINASE 89A		9		 Biochemical character	Os09g0561400	LOC_Os09g38830.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
6980	WAK89B	OsWAK89b	WALL-ASSOCIATED KINASE GENE 89B		WALL-ASSOCIATED KINASE 89B		9		 Biochemical character	Os09g0561450	LOC_Os09g38834.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
6981	WAK90	OsWAK90	WALL-ASSOCIATED KINASE GENE 90		WALL-ASSOCIATED KINASE 90		9		 Biochemical character	Os09g0561500	LOC_Os09g38840.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
6982	DEES1	WAK91, OsWAK91, OsDEES1	DEFECT IN EARLY EMBRYO SAC1	WALL-ASSOCIATED KINASE GENE 91	WALL-ASSOCIATED KINASE 91		9		 Biochemical character,  Seed - Morphological traits - Embryo	Os09g0561600	LOC_Os09g38850.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding		
6983	WAK92	OsWAK92, OsDEES1-L4	WALL-ASSOCIATED KINASE GENE 92		WALL-ASSOCIATED KINASE 92		9	OsDEES1 homolog.	 Biochemical character	Os09g0562600	LOC_Os09g38910.1				GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6984	WAK105	OsWAK105, YK3	WALL-ASSOCIATED KINASE GENE 105		WALL-ASSOCIATED KINASE 105		10	AF230502.	 Biochemical character	Os10g0152000	LOC_Os10g06140.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
6985	WAK122	OsWAK122	WALL-ASSOCIATED KINASE GENE 122		WALL-ASSOCIATED KINASE 122		11		 Biochemical character	Os11g0694200	LOC_Os11g47150.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
6986	WAK123	OsWAK123	WALL-ASSOCIATED KINASE GENE 123		WALL-ASSOCIATED KINASE 123		11		 Biochemical character	Os11g0694100	LOC_Os11g47140.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding		
7055	GAD3	OsGAD3	GLUTAMATE DECARBOXYLASE	glutamate decarboxylase 3	GLUTAMATE DECARBOXYLASE		3	AY187941. LOC_Os03g13300.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0236200	LOC_Os03g13300.1				GO:0005829 - cytosol, GO:0046686 - response to cadmium ion, GO:0030170 - pyridoxal phosphate binding, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0006536 - glutamate metabolic process, GO:0004351 - glutamate decarboxylase activity	TO:0000303 - cold tolerance	
7056	ISA1	OsISA1, ISA, OsISA, PHS8, PHS8/ISA1	ISOAMYLASE 1	isoamylase 1, isoamylase1, sugary-1, pre-harvest sprouting 8	ISOAMYLASE 1	sugary1, isa1, sug-1, phs8, phs8-1	8	LOC_Os08g40930. AB015615, AB093426. OsISA1 was strongly expressed in developing endosperm at the early milking stage, whereas it was present at lower expression levels in green leaves. HQ678910-HQ679078 (O. sativa and other wild rice species). GQ150881. The starch mutant sugary contains reduced activities of isoamylase1 (ISA1) (Kawagoe et al. 2005). The sugary-h (sug-h) mutant phenotype was controlled by a complementary interaction of two recessive genes, Isoamylase1 (OsISA1) and Starch branching enzyme IIa (OsBEIIa) (Lee et al. 2017). The sugary endosperm phenotype could be caused by a point mutation on OsISA1, which was shared by both sug-1 and sug-h mutants (Lee et al. 2017). TO:0000975: grain width.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances	Os08g0520900	LOC_Os08g40930.1				GO:0048623 - seed germination on parent plant, GO:0019156 - isoamylase activity, GO:0019252 - starch biosynthetic process, GO:0009960 - endosperm development, GO:0010231 - maintenance of seed dormancy, GO:0010029 - regulation of seed germination, GO:0009738 - abscisic acid mediated signaling, GO:0043169 - cation binding, GO:0005980 - glycogen catabolic process, GO:0009737 - response to abscisic acid stimulus	TO:0000399 - grain thickness, TO:0002658 - starch grain synthesis, TO:0000615 - abscisic acid sensitivity, TO:0000099 - sugary endosperm, TO:0000734 - grain length	
7058	PGWC8	pgwc8	PERCENTAGE OF GRAINS WITH CHALKINESS				8	high PGWC was controlled by a single recessive gene, pgwc8. the pgwc8 gene was mapped between SSR markers RM477 and RM447.	 Seed - Physiological traits						GO:0007275 - multicellular organismal development		
7063	RIRE3	RIRE3	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon				AB014738, AB014739.	 Other						GO:0032196 - transposition		
7064	RIRE3B	RIRE3B	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
7065	RIRE2	RIRE2, Osr26, Rire2, Retrosat2	GYPSY TYPE RETROTRANSPOSON	gypsy-type retrotransposon, LTR retrotransposon Osr26, RIRE2 element			5	AB030283, AB032021. AP001111: 59274-70587. AF111709. RIRE2 is a gypsy-like long terminal repeat retrotransposon with significant sequence similarity to Dasheng.	 Other						GO:0032196 - transposition		
7066	RIRE4	RIRE4	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
7067	RIRE5	RIRE5	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
7068	RIRE6	RIRE6	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
7069	RIRE7	RIRE7, Osr31, Rire7	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon, LTR retrotransposon Osr31			1	AP003054: 102778-110180.	 Other						GO:0032196 - transposition		
7070	RIRE8	RIRE8, Osr33, Rire8	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon, LTR retrotransposon Osr33				AP002864: 35539-47557 (chromosome 6). AB014740, AB014742.	 Other						GO:0032196 - transposition		
7071	RIRE8A	RIRE8A	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon				AB014740.	 Other						GO:0032196 - transposition		
7072	RIRE8B	RIRE8B	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon				AB014741.	 Other						GO:0032196 - transposition		
7073	RMU2	RMU2	MUTATOR 2						 Other						GO:0032196 - transposition, GO:0006280 - mutagenesis		
7074	qSS5	qSS5															
7075	SALT1	SALT1	SALT TOLERANCE 1						 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress		
7076	SST1	SST1	SPIKELET SEMI-STERILE						 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
7100	CCR1	OsCCR1	CINNAMOYL-COA REDUCTASE 1	OsCINNAMOYL-COENZYME A REDUCTASE1, CINNAMOYL-COENZYME A REDUCTASE 1, CINNAMOYL-CoA REDUCTASE 1	CINNAMOYL-COA REDUCTASE 1		2	LOC_Os02g56460. Q6K9A2.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0808800 	LOC_Os02g56460.1				GO:0016621 - cinnamoyl-CoA reductase activity, GO:0009411 - response to UV, GO:0009409 - response to cold, GO:0050662 - coenzyme binding, GO:0050832 - defense response to fungus, GO:0003824 - catalytic activity, GO:0009809 - lignin biosynthetic process	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000160 - UV light sensitivity	
7102	18S  rRNA	rrn18	18S RIBOSOMAL RNA	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D38480. BA000029 (Nipponbare complete mitochondrial genome). AB763988, AB763990.	 Biochemical character			GR:0100180			GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
7103	25S rRNA	25S rRNA	25S RIBOSOMAL RNA	25S RIBOSOMAL RNA				AK119809.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
7105	UBC	UBC, OsUBC32, UBC32	UBIQUITIN CONJUGATING ENZYME E2	Ubiquitin conjugating enzyme E2, Ubiquitin-conjugating enzyme 32	UBIQUITIN CONJUGATING ENZYME E2		2	LOC_Os02g42314. OsUBC32 in Zhang et al. 2015.	 Biochemical character	Os02g0634800	LOC_Os02g42314.2, LOC_Os02g42314.1				GO:0005622 - intracellular, GO:0031371 - ubiquitin conjugating enzyme complex, GO:0009737 - response to abscisic acid stimulus, GO:0016881 - acid-amino acid ligase activity, GO:0016558 - protein import into peroxisome matrix, GO:0006635 - fatty acid beta-oxidation, GO:0004842 - ubiquitin-protein ligase activity	TO:0000615 - abscisic acid sensitivity	
7107	UBQ5	RUB2, OsRUB2, NEDD8	UBIQUITIN 5	Ubiquitin 5, Ubiquitin, NEDD8-like protein RUB2, Ubiquitin-related protein 2	UBIQUITIN 5		6	P69321(japonica), P0C031(japonica).	 Biochemical character	Os06g0650100	LOC_Os06g44080.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus		
7109	EEF1A	eEF-1alpha	EUKARYOTIC ELONGATION FACTOR 1-ALPHA		EUKARYOTIC ELONGATION FACTOR 1-ALPHA				 Biochemical character						GO:0005853 - eukaryotic translation elongation factor 1 complex		
7111	CATB	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2	CATALASE B	Catalase B, Catalase isozyme B	CATALASE B		6	LOC_Os06g51150. A2YH64(indica), Q0D9C4(japonica). D26484. D64013. EC=1.11.1.6 GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0727200	LOC_Os06g51150.2, LOC_Os06g51150.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0005829 - cytosol, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009514 - glyoxysome, GO:0005777 - peroxisome, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0042744 - hydrogen peroxide catabolic process, GO:0004096 - catalase activity, GO:0055114 - oxidation reduction	TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000421 - pollen fertility, TO:0000074 - blast disease	PO:0009066 - anther 
7113	ADC1	OsADC1, ARGDC, ADC, OsAdc1	ARGININE DECARBODYLASE	Arginine decarboxylase, Arginine decarboxylase 1	ARGININE DECARBODYLASE		6	LOC_Os06g04070. EC=4.1.1.19 Q9SNN0. GO:0080167:response to karrikin. EU220429. AY604047.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0131300	LOC_Os06g04070.1				GO:0000287 - magnesium ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0009611 - response to wounding, GO:0009446 - putrescine biosynthetic process, GO:0009409 - response to cold, GO:0008792 - arginine decarboxylase activity, GO:0008295 - spermidine biosynthetic process, GO:0006596 - polyamine biosynthetic process, GO:0006527 - arginine catabolic process, GO:0006979 - response to oxidative stress	TO:0006001 - salt tolerance	
7114	CEBiP	CEBIP, Os-LYP1, LYP1, OsCEBiP	CHITIN ELICITOR BINDING PROTEIN	Chitin elicitor-binding protein, chitin-elicitor binding protein, lysin motif-containing protein 1, chitin oligosaccharide elicitor-binding protein	CHITIN ELICITOR BINDING PROTEIN	Oscebip, oscebip	3	Q8H8C7. a chitin receptor. a lysine motif (LysM) receptor-like protein (RLP). PDB: 5JCD, 5JCE. 	 Tolerance and resistance - Disease resistance	Os03g0133400	LOC_Os03g04110.2, LOC_Os03g04110.1				GO:0016998 - cell wall macromolecule catabolic process, GO:0016021 - integral to membrane, GO:0002238 - response to molecule of fungal origin, GO:0019722 - calcium-mediated signaling, GO:0050832 - defense response to fungus, GO:0008061 - chitin binding, GO:0006952 - defense response, GO:0032491 - detection of molecule of fungal origin, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000439 - fungal disease resistance, TO:0000112 - disease resistance	
7115	SUB1A	Sub1A, Sub1A-1, Sub1A-2, OsSUB1A	SUBMERGENCE 1A	submergence-1A		Sub1A-1, Sub1A-2, Sub1A-3, SUB1A1, SUB1A2, SUB1A-1, SUB1A-2	9	DQ011598b. Sub1A is absent from all japonica and some indica accessions, all of which are intolerant to submergence. FR720457-FR720461 (O. nivara and O. rufipogon). a group VII ethylene response factor (ERFVII).	 Tolerance and resistance - Stress tolerance						GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0009413 - response to flooding	TO:0000286 - submergence sensitivity, TO:0000114 - flooding related trait	
7118	SUB1B	Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166	SUBMERGENCE 1B	submergence-1B, ethylene response factor 63, APETALA2/ethylene-responsive element binding protein 166		Sub1B-1, Sub1B-2	9	LOC_Os09g11480. AP005705. EU429442: OnSub1B-1 (Oryza nivara Sub1B-1), EU429443: OnSub1B-2 (Oryza nivara Sub1B-2), EU429444: OrSub1B-1 (Oryza rufipogon Sub1B-1).	 Tolerance and resistance - Stress tolerance	Os09g0287000	LOC_Os09g11480.2, LOC_Os09g11480.1				GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0009413 - response to flooding, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0000173 - ethylene sensitivity	
7119	SUB1C	Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122	SUBMERGENCE 1C	submergence-1C, ethylene response factor 73, APETALA2/ethylene-responsive element binding protein 122		Sub1C-1, Sub1C-2	9	LOC_Os09g11460. AP006758. EU429445: OnSub1C-1 (Oryza nivara Sub1C-1), EU429446: OrSub1C-1 (Oryza rufipogon Sub1C-1). HM117839: OrhSub1C-1-L (O. rhizomatis SUB1C-1-Like), FR720463-FR720467: OeSub1C-1-L (alleles: OeSUB1C-1-L1, OeSUB1C-1-L2, OeSUB1C-1-L3, OeSUB1C-1-L4, OeSUB1C-1-L5) (O. eichingeri SUB1C-1-Like).	 Tolerance and resistance - Stress tolerance	Os09g0286600 	LOC_Os09g11460.2, LOC_Os09g11460.1				GO:0009723 - response to ethylene stimulus, GO:0009413 - response to flooding, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000173 - ethylene sensitivity	
7121	ACX1	OsACX1	ACYL-COA OXIDASE 1		ACYL-COA OXIDASE 1				 Biochemical character						GO:0003997 - acyl-CoA oxidase activity		
7122	ACX2	OsACX2	ACYL-COA OXIDASE 2		ACYL-COA OXIDASE 2				 Biochemical character						GO:0003997 - acyl-CoA oxidase activity		
7123	ACX3	OsACX3	ACYL-COA OXIDASE 3		ACYL-COA OXIDASE 3				 Biochemical character						GO:0003997 - acyl-CoA oxidase activity		
7125	NBS1	OsNbs1	NIJIMEGEN BREAKAGE SYNDROME 1						 Tolerance and resistance - Stress tolerance						GO:0006310 - DNA recombination, GO:0006281 - DNA repair		
7130	ZFP182	ZFP182/ZOS3-21, ZOS3-21	ZINC FINGER PROTEIN 182		ZINC FINGER PROTEIN 182		3	AY286474. 	 Tolerance and resistance - Stress tolerance,  Other	Os03g0823000	LOC_Os03g60810.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
7133	SLRL2	OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30	SLENDER RICE LIKE 2	SLR1-like2, GRAS protein 30	GRAS PROTEIN 30		5		 Other	Os05g0574900	LOC_Os05g49930.1				GO:0010468 - regulation of gene expression, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus		
7135	SLRL1	OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1	SLENDER RICE LIKE 1	SLR1-like1, GRAS protein 1			1	DELLA subfamily gene OsGAI in Zhou et al. 2014. OsSLRL in Chen et al. 2015. AU094565.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0646300	LOC_Os01g45860.1				GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0009413 - response to flooding, GO:0010468 - regulation of gene expression, GO:0009938 - negative regulation of gibberellic acid mediated signaling	TO:0000286 - submergence sensitivity, TO:0000166 - gibberellic acid sensitivity	
7137	IPK	OsIpk	INOSITOL PHOSPHATE KINASE		INOSITOL PHOSPHATE KINASE				 Biochemical character						GO:0004428 - inositol or phosphatidylinositol kinase activity		
7139	Hb1	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1	HEMOGLOBIN 1	Non-symbiotic hemoglobin 1, class 1 rice nonsymbiotic hemoglobin, class 1 nonsymbiotic hemoglobin, Non-legume hemoglobin, Phytogb1.1, phytoglobin 1.1	HEMOGLOBIN 1		3	O04986. D15507, D23324, U76029, U76030. AF335504. TO:0020098: nitrate sensitivity. GO:0035864: response to potassium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0233900	LOC_Os03g13140.2, LOC_Os03g13140.1				GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0010167 - response to nitrate, GO:0080033 - response to nitrite, GO:0005829 - cytosol, GO:0006970 - response to osmotic stress, GO:0015671 - oxygen transport, GO:0019825 - oxygen binding, GO:0020037 - heme binding, GO:0051592 - response to calcium ion	TO:0000095 - osmotic response sensitivity, TO:0000008 - potassium sensitivity, TO:0000006 - calcium sensitivity	
7143	UGE1	OsUGE-1	UDP-GLUCOSE 4-EPIMERASE 1		UDP-GLUCOSE 4-EPIMERASE 1				 Biochemical character						GO:0003978 - UDP-glucose 4-epimerase activity		
7152	LFL1	OsLFL1, OsSTA29, STA29	LATE-FLOWERING 1	B3 domain-containing protein LFL1, LEC2 and FUSCA3-like protein 1, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 1, LEC2/FUS3-LIKE 1	LEC2 AND FUSCA3-LIKE PROTEIN 1		1	PUTATIVE B3 TRANSCRIPTION FACTOR. A4LBC0. LOC_Os01g51610. a mature anther-preferentially expressed gene.	 Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0713600	LOC_Os01g51610.1				GO:0003700 - transcription factor activity, GO:0009908 - flower development, GO:0010843 - promoter binding, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000622 - flower development trait	PO:0009066 - anther , PO:0007615 - flower development stage 
7153	CDKA1;1	CDKA1;1	CYCLIN-DEPENDENT KINASE A1;1		CYCLIN-DEPENDENT KINASE A1;1				 Biochemical character						GO:0004693 - cyclin-dependent protein kinase activity		
7154	CYCD5;3	CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3	D-TYPE CYCLIN 5;3	Cyclin-D5-3, G1/S-specific cyclin-D5-3	D-TYPE CYCLIN 5;3		3	Q10QA2.	 Biochemical character	Os03g0203800	LOC_Os03g10650.1				GO:0007049 - cell cycle, GO:0005634 - nucleus, GO:0051301 - cell division		
7155	EL2	Orysa; EL2	D-TYPE CYCLIN-INTERACTING PROTEIN		D-TYPE CYCLIN-INTERACTING PROTEIN	Orysa;el2	3	Os03g01740. D-type cyclin-interacting protein. plant CDK inhibitor. A potent biotic elicitor for phytoalexin biosysthesis. D64038.	 Biochemical character	Os03g0107700	LOC_Os03g01740.1				GO:0051726 - regulation of cell cycle		
7156	LSI2	Lsi2, SIET1, OsLsi2	LOW SILICON RICE 2	low silicon 2, silicon efflux transporter 1, Si efflux transporter 1, Si/arsenite efflux transporter Lsi2	SILICON EFFLUX TRANSPORTER 1	lsi2	3	LOC_Os03g01700. AB222273. PO:0005772; exodermis ; PO:0009006; shoot ; PO:0000252; endodermis. GRO:0007045; 09-mature grain stage TO:0006054: arsenic concentration. ArsB/NhaD permease (arsenite efflux). TO:0001048: silicon content trait.	 Vegetative organ - Root,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os03g0107300	LOC_Os03g01700.1	GR:0080037			GO:0048831 - regulation of shoot development, GO:0006810 - transport, GO:0032523 - silicon efflux transmembrane transporter activity, GO:0048226 - Casparian strip	TO:0000031 - silicon sensitivity, TO:0000396 - grain yield	PO:0000252 - endodermis , PO:0005772 - exodermis , PO:0009006 - shoot system 
7159	MUTM1	MutM1, Fpg	MUTM PROTEIN 1	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	MUTM PROTEIN 1		6		 Biochemical character						GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity		
7160	BZR1	OsBZR1, Os BZR1	BRASSINAZOLE RESISTANT 1	BRASSINAZOLE-RESISTANT1		Osbzr1	7	LOC_Os07g39220. the closest ortholog of BZR1 and BES1. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. OsMIR396d Is a Direct Target of OsBZR1 (Tang et al. 2018).	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os07g0580500	LOC_Os07g39220.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0005737 - cytoplasm, GO:0009739 - response to gibberellin stimulus, GO:0005773 - vacuole, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0040008 - regulation of growth, GO:0009741 - response to brassinosteroid stimulus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000615 - abscisic acid sensitivity, TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity, TO:0000329 - tillering ability	
7163	CHL	OsCHL	CHLOROPHYLL A DEGRADING ENZYME	Chlorophyllase, Chlase	CHLOROPHYLLASE		10		 Biochemical character	Os10g0419600	LOC_Os10g28370.1	GR:0101292			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009536 - plastid, GO:0003824 - catalytic activity, GO:0047746 - chlorophyllase activity		
7166	APX1	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX	ASCORBATE PEROXIDASE 1	"\"L-ascorbate peroxidase 1, cytosolic\", Ascorbate peroxidase, cytosolic Ascorbate Peroxidase, ascorbate peroxidase 1, ascorbate peroxidase a"	ASCORBATE PEROXIDASE 1		3	LOC_Os03g17690. EC=1.11.1.11 A2XFC7(indica). Q10N21(japonica). B7E6Z4. D45423. C28227. AY254495. BAA08264. C25998, AU092225. PO:0009011; plant structure ; PO:0000003; whole plant.  PMDBID: PM0078091. GO:0072593: reactive oxygen species metabolic process. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0285700	LOC_Os03g17690.2, LOC_Os03g17690.1	GR:0061471			GO:0006970 - response to osmotic stress, GO:0050832 - defense response to fungus, GO:0055114 - oxidation reduction, GO:0006979 - response to oxidative stress, GO:0030955 - potassium ion binding, GO:0009651 - response to salt stress, GO:0042744 - hydrogen peroxide catabolic process, GO:0046688 - response to copper ion, GO:0009751 - response to salicylic acid stimulus, GO:0016688 - L-ascorbate peroxidase activity, GO:0020037 - heme binding, GO:0051775 - response to redox state, GO:0010332 - response to gamma radiation, GO:0005509 - calcium ion binding, GO:0006001 - fructose catabolic process, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000021 - copper sensitivity, TO:0000432 - temperature response trait, TO:0002657 - oxidative stress, TO:0000074 - blast disease	PO:0000003 - whole plant , PO:0009011 - plant structure 
7167	APX2	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1	L-ASCORBATE PEROXIDASE 2	"\"L-ascorbate peroxidase 2, cytosolic\", ascorbate peroxidase 2, ascorbate peroxidase b"	L-ASCORBATE PEROXIDASE 2	Osapx2	7	LOC_Os07g49400. KC626128-KC626136 (O. sativa and wild rice species, partial cds). D25238. Q9FE01. AB053297. BAA20889. AB050724. EC=1.11.1.11 Cytosolic Ascorbate Peroxidase. cAPX in Zhang et al. 2014. OsAPX1 in Huang et al. 2018. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0694700	LOC_Os07g49400.4, LOC_Os07g49400.3, LOC_Os07g49400.2, LOC_Os07g49400.1				GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009409 - response to cold, GO:0046688 - response to copper ion, GO:0042744 - hydrogen peroxide catabolic process, GO:0010332 - response to gamma radiation, GO:0005737 - cytoplasm, GO:0030955 - potassium ion binding, GO:0006801 - superoxide metabolic process, GO:0004601 - peroxidase activity, GO:0055114 - oxidation reduction, GO:0016688 - L-ascorbate peroxidase activity, GO:0020037 - heme binding, GO:0005509 - calcium ion binding, GO:0042742 - defense response to bacterium, GO:0009845 - seed germination, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0006979 - response to oxidative stress	TO:0000021 - copper sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage 
7170	MAS	OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1	MOMILACTONE A SYNTHASE	Momilactone A synthase 1, Momilactone A synthase	MOMILACTONE A SYNTHASE		4	EC=1.1.1.295 LOC_Os04g10010. Q7FAE1. momilactone biosynthetic pathway.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0179200	LOC_Os04g10010.1	GR:0101313			GO:0002238 - response to molecule of fungal origin, GO:0016102 - diterpenoid biosynthetic process, GO:0052315 - phytoalexin biosynthetic process, GO:0009536 - plastid, GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0008152 - metabolic process, GO:0005488 - binding, GO:0055114 - oxidation reduction, GO:0016491 - oxidoreductase activity, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway	TO:0000439 - fungal disease resistance, TO:0002670 - momilactone A content, TO:0002669 - diterpenoid phytoalexin content, TO:0000160 - UV light sensitivity	
7171	CYP99A2	CYP99A2	P-450 99A2	Cytochrome P450 99A2	CYTOCHROME P450 99A2		4	EC=1.14.-.-, 1.14.14.1 cytochrome P450 monooxygenase, Cyt P450, Cytochrome P450. Q7X7X4. momilactone biosynthetic pathway.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0180400	LOC_Os04g10160.1	GR:0101315			GO:0006952 - defense response, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009055 - electron carrier activity, GO:0055114 - oxidation reduction, GO:0004497 - monooxygenase activity, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0020037 - heme binding, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
7172	CYP99A3		P-450 99A3	Cytochrome P450 99A3	CYTOCHROME P450 99A3		4	EC=1.14.-.-, 1.14.14.1 cytochrome P450 monooxygenase, Cyt P450, Cytochrome P450. Q0JF01. momilactone biosynthetic pathway.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0178400	LOC_Os04g09920.1	GR:0101314			GO:0016020 - membrane, GO:0009411 - response to UV, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0022900 - electron transport chain, GO:0009536 - plastid, GO:0009055 - electron carrier activity, GO:0006952 - defense response, GO:0004497 - monooxygenase activity, GO:0055114 - oxidation reduction, GO:0051502 - diterpene phytoalexin biosynthetic process	TO:0000207 - plant height, TO:0000160 - UV light sensitivity, TO:0002669 - diterpenoid phytoalexin content, TO:0002675 - gibberellic acid content	
7173	CRSH1	OsCRSH1	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 1	calcium activating hyperphosphorylated guanine synthetase 1, Calcium-activated (p)ppGpp Synthetase 1, chloroplastic (p)ppGpp synthetase 1, Ca2+-activated RelA-SpoT homolog 1	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 1				 Biochemical character						GO:0009507 - chloroplast, GO:0005509 - calcium ion binding, GO:0015969 - guanosine tetraphosphate metabolic process		
7174	CRSH2	OsCRSH2	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 2	calcium activating hyperphosphorylated guanine synthetase 2, Calcium-activated (p)ppGpp Synthetase 2, chloroplastic (p)ppGpp synthetase 2, Ca2+-activated RelA-SpoT homolog 2	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 2				 Biochemical character						GO:0005509 - calcium ion binding, GO:0015969 - guanosine tetraphosphate metabolic process, GO:0009507 - chloroplast		
7175	CRSH3	OsCRSH3	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 3	calcium activating hyperphosphorylated guanine synthetase 3, Calcium-activated (p)ppGpp Synthetase 3, chloroplastic (p)ppGpp synthetase 3, Ca2+-activated RelA-SpoT homolog 3	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 3		5	AB298325.	 Biochemical character	Os05g0161800	LOC_Os05g06940.1				GO:0005509 - calcium ion binding, GO:0009507 - chloroplast, GO:0008728 - GTP diphosphokinase activity, GO:0015969 - guanosine tetraphosphate metabolic process		
7177	IDEF1	OsLFL2, LFL2, OsIDEF1	IDE-BINDING FACTOR 1	B3 domain-containing protein IDEF1, Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1, Transcription factor IDEF1, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2, IDE-binding factor 1, Iron Deficiency-responsive Element-binding Factor 1, iron deficiency-responsive cis-acting element binding factor 1	IDE-BINDING FACTOR 1		8	BR000654. Q6Z1Z3. PO:0009005; root ; PO:0009025; leaf. Positive transcriptional regulator. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0101000	LOC_Os08g01090.2, LOC_Os08g01090.1	GR:0080043			GO:0006355 - regulation of transcription, DNA-dependent, GO:0009753 - response to jasmonic acid stimulus, GO:0010106 - cellular response to iron ion starvation, GO:0003700 - transcription factor activity, GO:0010843 - promoter binding, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription	TO:0000495 - chlorophyll content, TO:0000207 - plant height, TO:0000224 - iron sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root , PO:0009025 - vascular leaf 
7181	CUTA1	OsCutA1	CU TOLERANCE A1	"\"Protein CutA 1, chloroplastic\""	CUTA1 PROTEIN		10	Q109R6.	 Tolerance and resistance - Stress tolerance	Os10g0378300	LOC_Os10g23204.1				GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0070207 - protein homotrimerization, GO:0010038 - response to metal ion		
7182	PEX11-1	OsPEX11-1, OsPEX11	PEROXIN 11-1	Peroxisomal membrane protein 11-1, Peroxin-11-1, peroxisomal biogenesis factor 11	PEROXIN 11-1		3	LOC_Os03g02590. peroxisomal protein. Q10SM7. GO:1900425: negative regulation of defense response to bacterium. GO:0044375: regulation of peroxisome size.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0117100	LOC_Os03g02590.4, LOC_Os03g02590.3, LOC_Os03g02590.2				GO:0016559 - peroxisome fission, GO:0016021 - integral to membrane, GO:0005778 - peroxisomal membrane	TO:0000175 - bacterial blight disease resistance	
7183	PEX11-2	OsPEX11-2, OsPEX11-5	PEROXIN 11-2	Peroxisomal membrane protein 11-2, Peroxin-11-2	PEROXIN 11-2		3	peroxisomal protein. Q10MN3.	 Biochemical character	Os03g0301950	LOC_Os03g19000.1, LOC_Os03g18990.1				GO:0005778 - peroxisomal membrane, GO:0016021 - integral to membrane, GO:0016559 - peroxisome fission		
7184	PEX11-3	OsPEX11-3, OsPEX11	PEROXIN 11-3	Peroxisomal membrane protein 11-3, Peroxin-11-3, peroxisomal biogenesis factor 11	PEROXIN 11-3		3	peroxisomal protein. A2XFQ8. Q10MN2. GO:0044375: regulation of peroxisome size. GO:1901002: positive regulation of response to salt stress. OsPEX11 in Cui et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0302000	LOC_Os03g19010.1				GO:0016021 - integral to membrane, GO:0005779 - integral to peroxisomal membrane, GO:0005778 - peroxisomal membrane, GO:0016559 - peroxisome fission, GO:0009651 - response to salt stress	TO:0006002 - proline content, TO:0000525 - sodium to potassium content ratio, TO:0006001 - salt tolerance	
7185	PEX11-4	OsPEX11-4	PEROXIN 11-4	Peroxisomal membrane protein 11-4, Peroxin-11-4	PEROXIN 11-4		4	peroxisomal protein. Q01IH3(indica), Q7XU74(japonica).	 Biochemical character	Os04g0534600	LOC_Os04g45210.1				GO:0005778 - peroxisomal membrane, GO:0016021 - integral to membrane, GO:0016559 - peroxisome fission		
7186	PEX11-5	OsPEX11-5	PEROXIN 11-5	Peroxisomal membrane protein 11-5, Peroxin-11-5	PEROXIN 11-5		6	peroxisomal protein. Q5VRJ8.	 Biochemical character	Os06g0127000	LOC_Os06g03660.2, LOC_Os06g03660.1				GO:0016559 - peroxisome fission, GO:0005778 - peroxisomal membrane, GO:0016021 - integral to membrane		
7188	DCL1	Dcl1, OsDCL1, osDCL1, Os-DCL1	DICER-LIKE 1	Dicer like 1, Dicer-like 1, Endoribonuclease Dicer homolog 1, Dicer-like protein 1	DICER-LIKE PROTEIN 1	osdcl1	3	EC=3.1.26.- Q8LMR2. PO:0009049; inflorescence. KC610856-KC610864 (O. sativa and wild rice species, partial cds). LOC_Os03g02970. targeted by miR162 (Qin et al. 2017).	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0121800	LOC_Os03g02970.1	GR:0101251			GO:0035197 - siRNA binding, GO:0050832 - defense response to fungus, GO:0035198 - miRNA binding, GO:0030145 - manganese ion binding, GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding, GO:0004525 - ribonuclease III activity, GO:0004521 - endoribonuclease activity, GO:0048830 - adventitious root development, GO:0005634 - nucleus, GO:0004386 - helicase activity, GO:0048367 - shoot development, GO:0031053 - primary microRNA processing, GO:0035195 - gene silencing by miRNA, GO:0003725 - double-stranded RNA binding, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0007275 - multicellular organismal development	TO:0000074 - blast disease, TO:0000084 - root number, TO:0000357 - growth and development trait, TO:0000085 - leaf rolling, TO:0000207 - plant height, TO:0000326 - leaf color	PO:0009049 - inflorescence 
7190	MIR169g	MIR-169g, osa-MIR169g	MICRORNA169G	micro RNA 169g			4	miRBase: MI0001122.LM379331	 Tolerance and resistance - Stress tolerance,  Other			GR:0100766			GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
7192	PING	Ping	PING ELEMENT	MITE Ping, MITE:Ping, Ping element				Transposable element (Mite), MINIATURE INVERTED REPEAT TRANSPOSABLE ELEMENT. EF441275. BK000587. AB087616.	 Other			GR:0061487			GO:0032196 - transposition		
7193	PONG	Pong	PONG ELEMENT	Pong element				MINIATURE INVERTED REPEAT TRANSPOSABLE ELEMENT, Transposable element (Mite). BK000586.	 Other			GR:0061488			GO:0032196 - transposition		
7194	MPING	mPing	MPING ELEMENT	Tourist mPing element, mPing element, miniature Ping				miniature inverted repeat transposable element, MITE, Transposable element (Mite). A sequence classified as a Tourist-like MITE of 430 base pairs, called miniature Ping (mPing), was present in about 70 copies in Nipponbare and in about 14 copies in 93-11 (Jiang et al. 2003). BK000588 (mPingA). AB087615. a MITE transposon.	 Other			GR:0061480			GO:0032196 - transposition		
7195	miR166	miR166	MICRORNA166						 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
7197	NDK3	Ndk3	NUCLEOSIDE DIPHOSPHATE KINASE 3		NUCLEOSIDE DIPHOSPHATE KINASE 3		5		 Biochemical character						GO:0004550 - nucleoside diphosphate kinase activity		
7199	PIGM	Pigm(t), Pi-gm(t), Pigm	PYRICULARIA ORYZAE RESISTANCE GM	Magnaporthe grisea resistance-gm, Blast resistance gm			6	Original line is Gumei4 (Indica). The allelism test showed that Pigm was allelic to Pi-2 and Pi-9, two known blast resistance genes (Deng el a. 2009).  The Pigm(t) locus between the markers C5843 and C0428 contains 6 candidate genes Os06g0286500, Os06g0286700, Os06g0287000, Os06g0287200, Os06g0287500 and LOC_Os06g17910(a pseudogene) (Deng et al. 2009). Pigm(t) is one of the NBS-LRR genes in the Pi2/Pi9 cluster on chromosome 6 (Zhu et al. 2012). The rice Pigm locus contains a cluster of genes encoding nucleotide-binding leucine-rich repeat (NLR) receptors that confer durable resistance to the fungus Magnaporthe oryzae without yield penalty. (Dang et al.2017)	 Tolerance and resistance - Disease resistance					65.8	GO:0009620 - response to fungus		
7200	PI35	Pi35(t)	PYRICULARIA ORYZAE RESISTANCE 35	Pyricularia grisea resistance 35, Magnaporthe grisea resistance 35, Blast resistance 35			1	Original line is Hokkai 188 (Japonica), Map position (132.0-136.0 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
7204	PGIP1	Ospgip1, pgip1, OsPGIP1	POLYGALACTURONASE-INHIBITING PROTEIN 1	Polygalacturonase-inhibiting protein 1, polygalacturonase inhibiting protein 1	POLYGALACTURONASE-INHIBITING PROTEIN 1		5	leucine-rich repeat (LRR) proteins, inhibitor of fungal polygalacturonase. AM180652. CAJ55691. LOC_Os05g01380.  Os05g0104300 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character	Os05g0104200	LOC_Os05g01380.1				GO:0050832 - defense response to fungus, GO:0006952 - defense response		
7205	PGIP2	Ospgip2, pgip2, OsPGIP2	POLYGALACTURONASE-INHIBITING PROTEIN 2	Polygalacturonase-inhibiting protein 2, polygalacturonase inhibiting protein 2	POLYGALACTURONASE-INHIBITING PROTEIN 2		5	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. AM180653. CAJ55692. LOC_Os05g01370.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0104150	LOC_Os05g01370.1				GO:0050832 - defense response to fungus, GO:0006952 - defense response	TO:0000439 - fungal disease resistance	
7206	PGIP3	Ospgip3, pgip3, OsPGIP3	POLYGALACTURONASE-INHIBITING PROTEIN 3	Polygalacturonase-inhibiting protein 3, polygalacturonase inhibiting protein 3	POLYGALACTURONASE-INHIBITING PROTEIN 3		5	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. AM180654. CAJ55693.	 Biochemical character	Os05g0104600	LOC_Os05g01430.1				GO:0050832 - defense response to fungus, GO:0006952 - defense response		
7207	PGIP4	Ospgip4, pgip4, OsPGIP4	POLYGALACTURONASE-INHIBITING PROTEIN 4	Polygalacturonase-inhibiting protein 4, polygalacturonase inhibiting protein 4	POLYGALACTURONASE-INHIBITING PROTEIN 4		5	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. AM180655. CAJ55694.	 Biochemical character	Os05g0104700	LOC_Os05g01444.1				GO:0006952 - defense response, GO:0050832 - defense response to fungus		
7215	qHD13	Hd13	HEADING DATE (QTL)-13	heading date(QTL)-13			12		 Reproductive organ,  Reproductive organ - Heading date								
7216	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a	HEADING DATE 3A	heading date 3A, Heading date-3a, Heading date (QTL)-3(t), Flowering locus T, FT-like gene 2	HD3A PROTEIN	hd3a	6	PO:0006318; floret (sense Poaceae. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. ortholog of Arabidopsis FT. Q93WI9. AB052941, AB052942, AB052943, AB052944. JN594212-JN594326 (O.sativa and other wild rice species). AB062675. AB426880-AB426888 (O. sativa and other wild rice species). GU727015-GU727061 (wild rice species). KM043287-KM043383  (O.sativa and other wild rice species).	 Reproductive organ,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os06g0157700	LOC_Os06g06320.1	GR:0060442			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism, GO:0005634 - nucleus, GO:0008429 - phosphatidylethanolamine binding, GO:0009909 - regulation of flower development, GO:0010229 - inflorescence development, GO:0005737 - cytoplasm, GO:0009908 - flower development, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0030154 - cell differentiation, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0048572 - short-day photoperiodism, GO:0048575 - short-day photoperiodism, flowering	TO:0000469 - days to maturity, TO:0000229 - photoperiod sensitivity, TO:0000396 - grain yield, TO:0000152 - panicle number, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0000137 - days to heading	PO:0000230 - inflorescence meristem , PO:0009049 - inflorescence , PO:0009082 - spikelet floret , PO:0009003 - sporophyte , PO:0009010 - seed , PO:0009013 - portion of meristem tissue 
7217	LEA3-1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3	LATE EMBRYOGENESIS ABUNDANT 3-1	Late embryogenesis abundant protein 3, late embryogenesis abundant protein 19, Group 3 LEA (type I) protein	LATE EMBRYOGENESIS ABUNDANT PROTEIN 3		5	LOC_Os05g46480. DQ837728. DQ789359. A2Y720. EF444535. U57641. P0C5A4. Z68090. A2Y720. GO:1901001: negative regulation of response to salt stress. 	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0542500 	LOC_Os05g46480.1, LOC_Os05g46480.2, LOC_Os05g46480.4, LOC_Os05g46480.3				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009411 - response to UV, GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress	TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000160 - UV light sensitivity, TO:0000303 - cold tolerance	
7221	HBD3	hbd3	HYBRID BREAKDOWN 3	hybrid breakdown 3			11	The gene on chromosome 11, hbd3, was mapped between RM5824 and RM1341. hbd3 was mapped to the NBS-LRR gene cluster region.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0007275 - multicellular organismal development		
7226	MRKa	MRKa, RKa, TRKa	MINGHUI RECEPTOR KINASE A	LRR receptor kinase-like (RK) protein a, RK protein a, receptor-kinase gene a in Minghui 63, receptor-kinase gene a in Teqing	MINGHUI RECEPTOR KINASE A		11	AY364476 (replaced by DQ355952). DQ355952, DQ355953. wild rice orthologs: OoRKa (O. officinalis), OmRKa (O. minuta).	 Biochemical character						GO:0006952 - defense response, GO:0016301 - kinase activity, GO:0016021 - integral to membrane, GO:0004872 - receptor activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
7227	MRKc	MRKc, RKc, TRKc	MINGHUI RECEPTOR KINASE C	LRR receptor kinase-like protein c, RK protein c, receptor-kinase gene c in Minghui 63, receptor-kinase gene a in Teqing	MINGHUI RECEPTOR KINASE C		11	AY364476 (replaced by DQ355952). DQ355952, DQ355955. wild rice ortholog: OmRKc (O. minuta).	 Biochemical character	Os11g0695800	LOC_Os11g47310.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0016301 - kinase activity, GO:0004872 - receptor activity		
7228	MRKd	MRKd, RKd, TRKd	MINGHUI RECEPTOR KINASE D	LRR receptor kinase-like protein d, RK protein d, receptor-kinase gene d in Minghui 63, receptor-kinase gene d in Teqing	MINGHUI RECEPTOR KINASE D		11	pseudogene. AY364476 (replaced by DQ355952). DQ355952, DQ355953.									
7229	EIF4E	eIF(iso)4E	EUKARYOTIC INITIATION FACTOR 4E		EUKARYOTIC INITIATION FACTOR 4E				 Biochemical character						GO:0006413 - translational initiation		
7230	PI40	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40	PYRICULARIA ORYZAE RESISTANCE 40	Pyricularia grisea resistance 40, Magnaporthe grisea resistance 40, Blast resistance 40			6	Original line is IR65482-4-136-2-2 (O. australiensis). Map position (54.1-61.6 cM). Pi40(t) is one of the NBS-LRR genes in the Pi2/Pi9 cluster on chromosome 6 (Zhu et al. 2012).	 Tolerance and resistance - Disease resistance,  Character as QTL - Grain quality						GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000510 - penetrated to total root ratio	
7231	PIZ5	Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2	PYRICULARIA ORYZAE RESISTANCE Z5	Magnaporthe grisea resistance z5, Blast resistance z5			6	Original line is Tadukan (Indica). Pi2(t) was renamed Pi-z5. Because Pi-2(t) was allelic to Pi-z, Pi-z is used for showing the locus and the first letter of the donor variety 5173 is given as a superscript as Pi-z5 (Kinoshita et al. 1994).	 Tolerance and resistance - Disease resistance					58.7	GO:0009620 - response to fungus		
7233	ClpP5	OsClpP5	CHLOROPLAST PROTEASE 5	pale-yellow-leaf	CHLOROPLAST PROTEASE 5	pyl-v	3		 Biochemical character						GO:0008233 - peptidase activity		
7236	DX	Dx	DWARF 986083D						 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
7238	qGL-3a	qGL-3a															
7240	qCTB8	qCTB8															
7243	qPE9-2	qPE9-2															
7245	qSPP7	qSPP7															
7248	qPBN6	qPBN6															
7249	qSBN1	qSBN1															
7251	ABA8OX1	OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1	ABA-8'-HYDROXYLASE 1	Abscisic acid 8'-hydroxylase 1, ABA 8'-hydroxylase 1 ; Cytochrome P450 707A5, ABA 8'-hydroxylase1	ABA-8'-HYDROXYLASE 1		2	LOC_Os02g47470. EC=1.14.13.9. Q09J79(indica). Q05JG2(japonica). 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0703600	LOC_Os02g47470.3, LOC_Os02g47470.2, LOC_Os02g47470.1	GR:0101185			GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0006950 - response to stress, GO:0009737 - response to abscisic acid stimulus, GO:0016491 - oxidoreductase activity, GO:0022900 - electron transport chain, GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity, GO:0032940 - secretion by cell, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0009414 - response to water deprivation, GO:0046345 - abscisic acid catabolic process, GO:0055114 - oxidation reduction, GO:0030912 - response to deep water, GO:0005783 - endoplasmic reticulum	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000286 - submergence sensitivity, TO:0000103 - deepwater stress, TO:0000478 - abscisic acid concentration	PO:0009006 - shoot system 
7252	ABA8OX2	OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2	ABA-8'-HYDROXYLASE 2	Abscisic acid 8'-hydroxylase 2, ABA 8'-hydroxylase 2, Cytochrome P450 707A6	ABA-8'-HYDROXYLASE 2		8	LOC_Os08g36860. EC=1.14.13.93 Q6ZDE3(japonica). Q09J78(indica).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0472800	LOC_Os08g36860.1				GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity, GO:0016021 - integral to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0046345 - abscisic acid catabolic process, GO:0009414 - response to water deprivation, GO:0055114 - oxidation reduction	TO:0000276 - drought tolerance	
7253	ABA8OX3	OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3	ABA-8'-HYDROXYLASE 3	Abscisic acid 8'-hydroxylase 3, ABA 8'-hydroxylase 3, Cytochrome P450 707A7	ABA-8'-HYDROXYLASE 3		9	LOC_Os09g28390.1 EC=1.14.13.93 Q0J185(japonica). A2Z212(indica).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0457100	LOC_Os09g28390.1				GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity, GO:0009414 - response to water deprivation, GO:0051607 - defense response to virus, GO:0055114 - oxidation reduction, GO:0046345 - abscisic acid catabolic process, GO:0020037 - heme binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0009845 - seed germination	TO:0000020 - black streak dwarf virus resistance, TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance	
7254	ACR1	OsACR1	ACT DOMAIN REPEAT PROTEIN 1	ACT-domain repeat protein 1	ACT DOMAIN REPEAT PROTEIN 1				 Biochemical character						GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7255	ACR5	OsACR5	ACT DOMAIN REPEAT PROTEIN 5	ACT-domain repeat protein 5	ACT DOMAIN REPEAT PROTEIN 5		3	AB117751.	 Biochemical character	Os03g0598100	LOC_Os03g40100.1				GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7256	ACR6	OsACR6	ACT DOMAIN REPEAT PROTEIN 6	ACT-domain repeat protein 6	ACT DOMAIN REPEAT PROTEIN 6		4	AB162116.	 Biochemical character	Os04g0391500	LOC_Os04g32110.1				GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7257	ACR7	OsACR7	ACT DOMAIN REPEAT PROTEIN 7	ACT-domain repeat protein 7	ACT DOMAIN REPEAT PROTEIN 7		3	AB117750.	 Biochemical character	Os03g0413100	LOC_Os03g29980.2				GO:0005634 - nucleus, GO:0031072 - heat shock protein binding, GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7258	ACR8	OsACR8	ACT DOMAIN REPEAT PROTEIN 8	ACT-domain repeat protein 8	ACT DOMAIN REPEAT PROTEIN 8		8	AB117935.	 Biochemical character	Os08g0533600	LOC_Os08g42100.1				GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7259	ACR9	OsACR9	ACT DOMAIN REPEAT PROTEIN 9	ACT-domain repeat protein 9	ACT DOMAIN REPEAT PROTEIN 9		3	AB117936.	 Biochemical character	Os03g0247900	LOC_Os03g14370.2, LOC_Os03g14370.1				GO:0008152 - metabolic process, GO:0016597 - amino acid binding		
7261	DSH1	DSH1	DIHYDROSPHINGOSINE C4 HYDROXYLASE 1	dihydrosphingosine C4 hydroxylase 1	DIHYDROSPHINGOSINE C4 HYDROXYLASE 1		6	BAD37310, BAD37461. PO:0009073; stigma ; PO:0020121; lateral root ; PO:0005020; vascular bundle ; PO:0020144; apical meristem ; PO:0009013; meristem. GRO:0007142; 1-4 leaf stage.	 Reproductive organ - Pollination, fertilization, fertility	Os06g0226950	LOC_Os06g12250.1	GR:0080040			GO:0016020 - membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0006665 - sphingolipid metabolic process, GO:0003824 - catalytic activity, GO:0030148 - sphingolipid biosynthetic process, GO:0008152 - metabolic process, GO:0000170 - sphingosine hydroxylase activity	TO:0000420 - fertility related trait	PO:0005020 - vascular bundle , PO:0009013 - portion of meristem tissue , PO:0009073 - stigma , PO:0020121 - lateral root , PO:0020144 - apical meristem 
7262	DSH2	DSH2	DIHYDROSPHINGOSINE C4 HYDROXYLASE 2	dihydrosphingosine C4 hydroxylase 2	DIHYDROSPHINGOSINE C4 HYDROXYLASE 2				 Biochemical character						GO:0030148 - sphingolipid biosynthetic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0000170 - sphingosine hydroxylase activity, GO:0006665 - sphingolipid metabolic process, GO:0003824 - catalytic activity, GO:0008152 - metabolic process, GO:0016020 - membrane		
7263	DSH3	DSH3	DIHYDROSPHINGOSINE C4 HYDROXYLASE 3	dihydrosphingosine C4 hydroxylase 3	DIHYDROSPHINGOSINE C4 HYDROXYLASE 3				 Biochemical character						GO:0000170 - sphingosine hydroxylase activity, GO:0006665 - sphingolipid metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030148 - sphingolipid biosynthetic process, GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0016020 - membrane		
7264	DSH4	DSH4	DIHYDROSPHINGOSINE C4 HYDROXYLASE 4	dihydrosphingosine C4 hydroxylase 4	DIHYDROSPHINGOSINE C4 HYDROXYLASE 4				 Biochemical character						GO:0008152 - metabolic process, GO:0016020 - membrane, GO:0030148 - sphingolipid biosynthetic process, GO:0000170 - sphingosine hydroxylase activity, GO:0006665 - sphingolipid metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0003824 - catalytic activity		
7265	DSH5	DSH5	DIHYDROSPHINGOSINE C4 HYDROXYLASE 5	dihydrosphingosine C4 hydroxylase 5	DIHYDROSPHINGOSINE C4 HYDROXYLASE 5				 Biochemical character						GO:0003824 - catalytic activity, GO:0000170 - sphingosine hydroxylase activity, GO:0006665 - sphingolipid metabolic process, GO:0008152 - metabolic process, GO:0030148 - sphingolipid biosynthetic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016020 - membrane		
7266	FON3	FON3	FLORAL ORGAN NUMBER 3	floral organ number3					 Reproductive organ,  Reproductive organ - Inflorescence						GO:0009887 - organ morphogenesis, GO:0009888 - tissue development		
7267	GME	GME	GDP-D-MANNOSE 3',5'-EPIMERASE	"GDP-d-mannose 3\"\", 5\"\"-epimerase"	GDP-D-MANNOSE 3,5-EPIMERASE				 Biochemical character						GO:0047918 - GDP-mannose 3,5-epimerase activity		
7268	GSTU17	OsGSTU17, OsGST23, GST23	TAU GLUTATHIONE S-TRANSFERASE 17	glutathione S-transferase 17, Glutathione S-transferase 23	TAU GLUTATHIONE S-TRANSFERASE 17		9	AF402804. LOC_Os09g29200. OsGST23 in Wang et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0467200	LOC_Os09g29200.1				GO:0009414 - response to water deprivation, GO:0004364 - glutathione transferase activity	TO:0000276 - drought tolerance	
7270	LAZY1	lazy1, LA1, OsLazy1	LAZY 1			lazy1-1, lazy1-2, lazy1-3, la1-Shiokari, la1-ZF802, la, la-2, la1	11	LOC_Os11g29840. DQ855268. a gravitropism-related gene.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os11g0490600	LOC_Os11g29840.1				GO:0010031 - circumnutation, GO:0009734 - auxin mediated signaling pathway, GO:0009629 - response to gravity, GO:0009630 - gravitropism	TO:0002693 - gravity response trait, TO:0000567 - tiller angle	
7273	BLE3	OsBLE3	BRASSINOLIDE ENHANCED GENE 3	brassinolide-enhanced 3, BL-enhanced 3, UPF0497 membrane protein BLE3, Protein brassinolide-enhanced 3, Protein BL-enhanced 3	UPF0497 MEMBRANE PROTEIN BLE3		5	Os05g0245300. LOC_Os05g15630. A2Y2B7(indica). Q84UT5(japonica). PO:0020148; shoot apical meristem ; PO:0020104; leaf sheath ; PO:0009015; vascular tissue ; PO:0020142; stem internode ; PO:0009005; root. GRO:0007048; 04-stem elongation stage.	 Other	Os05g0245300	LOC_Os05g15630.1	GR:0080018			GO:0009826 - unidimensional cell growth, GO:0016020 - membrane, GO:0035264 - multicellular organism growth, GO:0007275 - multicellular organismal development, GO:0016021 - integral to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0003824 - catalytic activity, GO:0009741 - response to brassinosteroid stimulus, GO:0009733 - response to auxin stimulus	TO:0000227 - root length, TO:0000207 - plant height, TO:0000084 - root number, TO:0000145 - internode length, TO:0000206 - leaf angle	PO:0009005 - root , PO:0009015 - portion of vascular tissue , PO:0020104 - leaf sheath , PO:0020142 - stem internode , PO:0020148 - shoot apical meristem 
7274	CAX1A	OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a	Ca(2+)/H(+) EXCHANGER 1A	Vacuolar cation/proton exchanger 1a, Ca(2+)/H(+) exchanger 1a, cation/H+ exchanger 1a, cation/proton exchanger 1a, cation/H exchanger 1a, Na+/Ca2+ Exchanger 2, Sodium/Calcium exchanger 2	Ca(2+)/H(+) EXCHANGER 1A		1	AB112656. Q769E5. LOC_Os01g37690. Oryza barthii: ObarCAX1a: OBART01G19480, Oryza brachyantha: ObraCAX1a: OB01G29140, Oryza glaberrima: OglaCAX1a: ORGLA01G0159500, Oryza glumipatula: OgluCAX1a: OGLUM01G23110, Oryza longistaminata: OlCAX1a: OLONG_003101, Oryza meridionalis: OmCAX1a: OMERI03G17940, Oryza nivara: OnCAX1a: ONIVA01G22100, Oryza punctata: OpCAX1a: OPUNC01G19850, Oryza rufipogon: OrCAX1a: ORUFI01G21940.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0557500	LOC_Os01g37690.2, LOC_Os01g37690.1				GO:0016021 - integral to membrane, GO:0015297 - antiporter activity, GO:0005509 - calcium ion binding, GO:0051592 - response to calcium ion, GO:0055085 - transmembrane transport, GO:0006816 - calcium ion transport, GO:0008324 - cation transmembrane transporter activity, GO:0016036 - cellular response to phosphate starvation, GO:0009411 - response to UV, GO:0005773 - vacuole	TO:0000102 - phosphorus sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000160 - UV light sensitivity	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009005 - root 
7275	CCA1	OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1	CIRCADIAN CLOCK ASSOCIATED 1	LATE ELONGATED HYPOCOTYL			8	a rice ortholog of Arabidopsis gene for circadian clock component. BF889434. AY885916-AY885946 and DQ374829-DQ374856 (O. sativa and other wild rice species, partial ads). a CCA1 ortholog in rice.	 Heterochrony,  Tolerance and resistance - Disease resistance	Os08g0157600	LOC_Os08g06110.5, LOC_Os08g06110.4, LOC_Os08g06110.3, LOC_Os08g06110.2				GO:0003677 - DNA binding, GO:0007623 - circadian rhythm, GO:0042752 - regulation of circadian rhythm, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
7276	CEL9A	OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A	CELLULASE 9A	glycoside hydrolase OsGH9C3, glycoside hydrolase 9C3, endoglucanase 5	CELLULASE 9A		1	LOC_Os01g12070. Q5NAT0. AB038510. a 68 kDa EGase. an ortholog of TomCel8, a tomato EGase. auxin-induced 51 kDa endo-1,4-beta-glucanase. 	 Biochemical character	Os01g0220100	LOC_Os01g12070.1				GO:0016021 - integral to membrane, GO:0007047 - cell wall organization, GO:0009733 - response to auxin stimulus, GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process	TO:0000163 - auxin sensitivity	
7277	CEL9D	OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1	CELLULASE 9D	Endoglucanase 9, Endo-1, 4-beta glucanase 9, glycoside hydrolase OsGH9A1, glycoside hydrolase 9A1	CELLULASE 9D		3	EC=3.2.1.4 P0C1U4. AB040817. a KORRIGAN (KOR) homolog.	 Biochemical character	Os03g0329500	LOC_Os03g21210.1				GO:0042538 - hyperosmotic salinity response, GO:0043622 - cortical microtubule organization, GO:0009735 - response to cytokinin stimulus, GO:0007047 - cell wall organization, GO:0005794 - Golgi apparatus, GO:0005886 - plasma membrane, GO:0009624 - response to nematode, GO:0009504 - cell plate, GO:0005769 - early endosome, GO:0008810 - cellulase activity, GO:0048367 - shoot development, GO:0016021 - integral to membrane, GO:0030245 - cellulose catabolic process, GO:0009826 - unidimensional cell growth		
7278	CLC-1	OsCLC-1	CHLORIDE CHANNEL 1		CHLORIDE CHANNEL 1				 Biochemical character						GO:0005254 - chloride channel activity		
7279	CLC-2	OsCLC-2	CHLORIDE CHANNEL 2		CHLORIDE CHANNEL 2				 Biochemical character						GO:0005254 - chloride channel activity		
7281	FAD7	OsFAD7	OMEGA-3 FATTY ACID DESATURASE 7	w-3 fatty acid desaturase-7	OMEGA-3 FATTY ACID DESATURASE 7			AB232382. GO:0080167 response to karrikin.	 Biochemical character						GO:0005783 - endoplasmic reticulum, GO:0004768 - stearoyl-CoA 9-desaturase activity, GO:0009941 - chloroplast envelope, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0009409 - response to cold, GO:0042389 - omega-3 fatty acid desaturase activity, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water		
7282	FAD8	OsFAD8, Osfad8	OMEGA-3 FATTY ACID DESATURASE 8	w-3 fatty acid desaturase-8, chloroplast omega-3 fatty acid desaturase 8	OMEGA-3 FATTY ACID DESATURASE 8		7	AB232383. AY848920. GO:0080167 response to karrikin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0693800 	LOC_Os07g49310.2, LOC_Os07g49310.1				GO:0009941 - chloroplast envelope, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, GO:0042389 - omega-3 fatty acid desaturase activity, GO:0005783 - endoplasmic reticulum, GO:0004768 - stearoyl-CoA 9-desaturase activity, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0009409 - response to cold		
7283	KSL10	OsKSL10, KS10, OsKS10, OsTPS33	KAURENE SYNTHASE-LIKE 10	"Ent-kaurene synthase 10, \"Ent-sandaracopimara-8(14), 15-diene synthase\", Ent-sandaracopimaradiene synthase, Ent-kaurene synthase-like 10, ent-sandaracopimaradiene synthase, ent-pimaradiene synthase, terpene synthase 33"	KAURENE SYNTHASE-LIKE 10		12	EC=4.2.3.29 Q2QQJ5. DQ823355. AB126937. LOC_Os12g30824.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0491800	LOC_Os12g30824.2, LOC_Os12g30824.1	GR:0101309			GO:0006952 - defense response, GO:0051501 - diterpene phytoalexin metabolic process, GO:0000287 - magnesium ion binding, GO:0009899 - ent-kaurene synthase activity, GO:0008152 - metabolic process, GO:0016829 - lyase activity, GO:0034280 - ent-sandaracopimaradiene synthase activity		
7284	KSL11	OsKSL11, KS11, OsKS11	KAURENE SYNTHASE-LIKE 11	Ent-kaurene synthase 11, Stemod-13(17)-ene synthase, Stemodene synthase, Ent-kaurene synthase-like 11, syn-stemod-13(17)-ene synthase, exo-stemodene synthase, syn-stemodene synthase	KAURENE SYNTHASE-LIKE 11			EC=4.2.3.34 DQ100373. Q1AHB2.	 Biochemical character			GR:0101316			GO:0009899 - ent-kaurene synthase activity, GO:0008152 - metabolic process, GO:0016829 - lyase activity, GO:0009536 - plastid, GO:0034283 - syn-stemod-13(17)-ene synthase activity, GO:0006952 - defense response, GO:0000287 - magnesium ion binding, GO:0051501 - diterpene phytoalexin metabolic process		
7293	LOL2	OsLOL2, OsLSD5, OsLOL5, LOL5	LSD1-LIKE ZINC FINGER PROTEIN	LSD1-like 2, lsd one like 2, LSD1-like-5	LSD1-LIKE ZINC FINGER PROTEIN		1	Q704V3. AU031595. similar to Arabidopsis LOL2 (lsd one like 2). an LSD1 ortholog. AJ620677. OsLOL5 in Guan et al. 2016.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0612700	LOC_Os01g42710.1				GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0009686 - gibberellin biosynthetic process, GO:0006952 - defense response, GO:0005634 - nucleus, GO:0006979 - response to oxidative stress, GO:0031341 - regulation of cell killing, GO:0010446 - response to alkalinity, GO:0031349 - positive regulation of defense response, GO:0045927 - positive regulation of growth, GO:0033194 - response to hydroperoxide	TO:0002675 - gibberellic acid content, TO:0006001 - salt tolerance, TO:0000652 - leaf necrosis, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000207 - plant height	
7294	GSN1	MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1	GRAIN SIZE AND NUMBER1	Oryza sativa Mitogen-Activated Protein Kinase Phosphatase 1, Mitogen-Activated Protein Kinase Phosphatase 1, MAPK phosphatase 1, large grain8, LARGE GRAIN 8, grain size and number1, grain size and number 1, grain length and awn 1	MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1	large8-1, large8-2, large8-3, gsn1, gla1	5	AB284130. TO:0000970: panicle density.	 Biochemical character,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0115800	LOC_Os05g02500.3, LOC_Os05g02500.2, LOC_Os05g02500.1				GO:0048316 - seed development, GO:0033549 - MAP kinase phosphatase activity, GO:0016301 - kinase activity, GO:0042127 - regulation of cell proliferation, GO:0005737 - cytoplasm, GO:0008285 - negative regulation of cell proliferation, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0009651 - response to salt stress, GO:0010225 - response to UV-C	TO:0000653 - seed development trait, TO:0000072 - awn length, TO:0000734 - grain length, TO:0000557 - secondary branch number, TO:0000547 - primary branch number, TO:0002759 - grain number, TO:0000447 - filled grain number, TO:0006032 - panicle size, TO:0000590 - grain weight, TO:0000397 - grain size	PO:0009066 - anther , PO:0025034 - leaf , PO:0025349 - awn , PO:0009039 - glume , PO:0009051 - spikelet , PO:0009047 - stem , PO:0009005 - root , PO:0001170 - seed development stage 
7296	MPK3	OsMPK3	MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 3		MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 3				 Biochemical character						GO:0033549 - MAP kinase phosphatase activity		
7297	MPK6	OsMPK6	MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 6		MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 6				 Biochemical character						GO:0033549 - MAP kinase phosphatase activity		
7298	MSBP1	OsMSBP1	MEMBRANE STEROID BINDING PROTEIN 1		MEMBRANE STEROID BINDING PROTEIN 1		10		 Biochemical character	Os10g0502500 	LOC_Os10g35850.1				GO:0005886 - plasma membrane, GO:0005496 - steroid binding		
7299	MSBP2	OsMSBP2, OsMSBP1	MEMBRANE STEROID BINDING PROTEIN 2	membrane steroid-binding protein 1 homologue	MEMBRANE STEROID BINDING PROTEIN 2		10	OsMSBP1 in Xu et al. 2015.	 Biochemical character	Os10g0502600 	LOC_Os10g35870.1				GO:0020037 - heme binding, GO:0005496 - steroid binding		
7300	NCED2	OSNCED2, OsNCED2, OsNCED5, NCED5	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2	9-cis-epoxycarotenoid dioxygenase 2	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2		12	LOC_Os12g42280. AL731885. AY838901. OsNCED5 in Welsch et al. 2008, Teng et al. 2014, Xiong et al. 2014, Du et al. 2015, Zhao et al. 2016, Hong et al. 2016, Zhang et al. 2018. an ABA biosynthesis gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0617400	LOC_Os12g42280.1				GO:0009688 - abscisic acid biosynthetic process, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity	TO:0002667 - abscisic acid content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
7301	NCED3	OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2	9-CIS-EPOXYCAROTENOID DIOXYGENASE 3	9-cis-epoxycarotenoid dioxygenase 3	9-CIS-EPOXYCAROTENOID DIOXYGENASE 3		7	LOC_Os07g05940. AP005632. AY838900. OsNCED4 in Welsch et al. 2008, Xu et al. 2013, Liang et al. 2014, Teng et al. 2014, Xiong et al. 2014, Du et al. 2015, Liu et al. 2016, Zhao et al. 2016, Hong et al. 2016, Zong et al. 2016, He et al. 2018, Fu et al. 2018, Zhang et al. 2018. an ABA biosynthesis gene. OsNECD2 in Du et al. 2015.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0154100	LOC_Os07g05940.1				GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0009688 - abscisic acid biosynthetic process	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0002667 - abscisic acid content	
7302	NPSN11	OsNPSN11, OryzaNPSN11	NOVEL PLANT SNARE 11	SNARE 11	NOVEL PLANT SNARE 11		6	AY740014. AAU94635. t-SNARE.	 Biochemical character	Os06g0715100	LOC_Os06g50120.2, LOC_Os06g50120.1				GO:0016021 - integral to membrane, GO:0015031 - protein transport, GO:0016192 - vesicle-mediated transport, GO:0009504 - cell plate, GO:0005886 - plasma membrane		
7303	NPSN12	OsNPSN12, OryzaNPSN12	NOVEL PLANT SNARE 12	SNARE 12	NOVEL PLANT SNARE 12		3	AY740015. AAU94636. t-SNARE.	 Biochemical character	Os03g0369800	LOC_Os03g25390.3, LOC_Os03g25390.2, LOC_Os03g25390.1				GO:0016192 - vesicle-mediated transport, GO:0016021 - integral to membrane, GO:0015031 - protein transport, GO:0005886 - plasma membrane		
7304	NPSN13	OsNPSN13, OryzaNPSN13	NOVEL PLANT SNARE 13	SNARE 13	NOVEL PLANT SNARE 13		7	AY740016. AAU94637. t-SNARE.	 Biochemical character	Os07g0637400	LOC_Os07g44350.1				GO:0016192 - vesicle-mediated transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0015031 - protein transport		
7305	PCL1	OsPCL1	PHYTOCLOCK 1	PCL1 homolog			1	AY581256. AB206578. Q94DH3. Circadian clock-associated gene.	 Heterochrony	Os01g0971800	LOC_Os01g74020.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0007623 - circadian rhythm, GO:0003682 - chromatin binding, GO:0005634 - nucleus		
7306	PDK1	OsPDK1	PYRUVATE DEHYDROGENASE KINASE 1	pyruvate dehydrogenase kinase 1	PYRUVATE DEHYDROGENASE KINASE 1				 Biochemical character						GO:0004740 - pyruvate dehydrogenase (acetyl-transferring) kinase activity		
7307	PDK2	OsPDK2	PYRUVATE DEHYDROGENASE KINASE 2	pyruvate dehydrogenase kinase 2	PYRUVATE DEHYDROGENASE KINASE 2				 Biochemical character						GO:0004740 - pyruvate dehydrogenase (acetyl-transferring) kinase activity		
7309	PIP2;3	OsPIP2;3, PIP2-3, OsPIP2-2	PLASMA MEMBRANE INTRINSIC PROTEIN 2;3	Probable aquaporin PIP2-3, Plasma membrane intrinsic protein 2-3, aquaporin 2;3	PLASMA MEMBRANE INTRINSIC PROTEIN 2;3		4	AL662958. Q7XUA6. LOC_Os04g44060. BE530955. Water channel protein (WCP-III). OsPIP2-2 in Guo et al. 2006.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os04g0521100	LOC_Os04g44060.1				GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005215 - transporter activity, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0016021 - integral to membrane	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009005 - root 
7310	PIP2;5	OsPIP2;5, PIP2-5	PLASMA MEMBRANE INTRINSIC PROTEIN 2;5	Aquaporin PIP2-5, Plasma membrane intrinsic protein 2-5	PLASMA MEMBRANE INTRINSIC PROTEIN 2;5		7	AP004668. Q8GRI8. LOC_Os07g26660.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0448400	LOC_Os07g26660.1				GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport	TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
7312	SBP	OsSBP	STEROID BINDING PROTEIN		STEROID BINDING PROTEIN		2		 Biochemical character	Os02g0793700 	LOC_Os02g55060.2, LOC_Os02g55060.1				GO:0005496 - steroid binding, GO:0005829 - cytosol, GO:0035264 - multicellular organism growth		
7313	TIP1;1	OsTIP1;1, TIP1-1, rTIP1	TONOPLAST INTRINSIC PROTEIN 1;1	tonoplast intrinsic protein 1;1, Probable aquaporin TIP1-1, Tonoplast intrinsic protein 1-1, rice Tip 1, tonoplast intrinsic protein 1	TONOPLAST INTRINSIC PROTEIN 1;1		3	Aquaporin-TIP. Gamma TIP. AC090485. P50156. D25534. GO:0080170: hydrogen peroxide transmembrane transport. LOC_Os03g05290.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0146100	LOC_Os03g05290.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0043674 - columella, GO:0006970 - response to osmotic stress, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0005774 - vacuolar membrane, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0006950 - response to stress, GO:0006810 - transport, GO:0005773 - vacuole, GO:0005215 - transporter activity, GO:0030104 - water homeostasis, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	
7314	TIP2;1	OsTIP2;1, TIP2-1, TIP2	TONOPLAST INTRINSIC PROTEIN 2;1	tonoplast intrinsic protein 2;1, Probable aquaporin TIP2-1, Tonoplast intrinsic protein 2-1	TONOPLAST INTRINSIC PROTEIN 2;1		2	AP005289. Q7XA61. LOC_Os02g44080.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0658100	LOC_Os02g44080.1				GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0005773 - vacuole, GO:0005215 - transporter activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0055085 - transmembrane transport		
7315	TIP2;2	OsTIP2;2, TIP2-2	TONOPLAST INTRINSIC PROTEIN 2;2	tonoplast intrinsic protein 2;2, Probable aquaporin TIP2-2, Tonoplast intrinsic protein 2-2	TONOPLAST INTRINSIC PROTEIN 2;2		6	AP004784. Q5Z6F0. LOC_Os06g22960.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0336200	LOC_Os06g22960.1				GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0016020 - membrane, GO:0005773 - vacuole, GO:0005215 - transporter activity	TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
7316	TOC1	OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07	TIMING OF CAB EXPRESSION 1	Two-component response regulator-like PRR1, Pseudo-response regulator 1, A-type RR 21, CCT domain-containing gene 7, CCT (CO, CO-LIKE and TOC1) domain protein 7, CCT domain protein 7	PSEUDO-RESPONSE REGULATOR 1		2	Q689G9, AB189038. circadian clock-related gene. LOC_Os02g40510. a rice ortholog of Arabidopsis gene for circadian clock component. a rice ortholog of the Arabidopsis TOC1/PRR1 gene.	 Reproductive organ - Heading date,  Heterochrony	Os02g0618200	LOC_Os02g40510.1				GO:0005634 - nucleus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0007623 - circadian rhythm, GO:0042752 - regulation of circadian rhythm, GO:0048511 - rhythmic process, GO:0000156 - two-component response regulator activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent		
7317	TPS13	OsTPS13	TERPENE SYNTHASE 13	(E)-beta-caryophyllene synthase	TERPENE SYNTHASE 13				 Biochemical character						GO:0010333 - terpene synthase activity		
7318	TPS3	OsTPS3	TERPENE SYNTHASE 3		TERPENE SYNTHASE 3			(E)-beta-caryophyllene synthase. OsTPS3, an enzyme catalyzing the formation of volatile sesquiterpenes, plays a role in indirect defense of rice plants by attracting more parasitoid wasps of Anagrus nilaparvatae.	 Biochemical character,  Tolerance and resistance - Insect resistance						GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010333 - terpene synthase activity	TO:0000401 - plant growth hormone sensitivity	
7321	PI39	Pi39(t), Pi39	PYRICULARIA ORYZAE RESISTANCE 39	Pyricularia grisea resistance 39, Magnaporthe grisea resistance 39, Blast resistance 39			12	Original line is Q15.	 Tolerance and resistance - Disease resistance,  Character as QTL - Grain quality					50.4	GO:0009620 - response to fungus	TO:0000510 - penetrated to total root ratio, TO:0000477 - panicle blast disease resistance	
7324	ROMT9	COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT	O-METHYLTRANSFERASE 9	Quercetin 3-O-methyltransferase 1, Flavonol 3-O-methyltransferase 1, caffeic acid 3-O-methyltransferase, Flavonol 3-O-methyltransferase 1, caffeic acid O-methyltransferase 1, 5-hydroxyconiferaldehyde O-methyltransferase 1, 5-hydroxyconiferaldehyde OMT1, 5-HCAld OMT1	O-METHYLTRANSFERASE 9	oscomt1	8	EC=2.1.1.76 Q6ZD89. DQ288259. AB122056, XM_480185. LOC_Os08g06100. ROMT9 is a major OMT required fortricin biosynthesis (Lam et al. 2015). GO:1901698: response to nitrogen compound.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os08g0157500	LOC_Os08g06100.1				GO:0009809 - lignin biosynthetic process, GO:0009411 - response to UV, GO:0017096 - acetylserotonin O-methyltransferase activity, GO:0030187 - melatonin biosynthetic process, GO:0005737 - cytoplasm, GO:0009642 - response to light intensity, GO:0046983 - protein dimerization activity, GO:0009834 - secondary cell wall biogenesis, GO:0009698 - phenylpropanoid metabolic process, GO:0008171 - O-methyltransferase activity, GO:0030755 - quercetin 3-O-methyltransferase activity, GO:0009807 - lignan biosynthetic process	TO:0000011 - nitrogen sensitivity, TO:0000160 - UV light sensitivity, TO:0000460 - light intensity sensitivity, TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content, TO:0000051 - stem strength	
7326	DTOK0	dTok0	ACTIVE TRANSPOSABLE ELEMENT						 Other						GO:0032196 - transposition		
7327	ADH3	Adh3, adh2(t)*	ALCOHOL DEHYDROGENASE 3	Alcohol dehydrogenase 3, alcohol dehydrogenase-3, Alcohol dehydrogenase 2, alcohol dehydrogenase-2(cDNA)	ALCOHOL DEHYDROGENASE 3				 Biochemical character			GR:0060013			GO:0018468 - alcohol dehydrogenase (acceptor) activity, GO:0004022 - alcohol dehydrogenase (NAD) activity		
7332	BIF2	bif2, Osbif2, OsBIF2, OsPID, PID	BARREN INFLORESCENCE 2	barren inflorescence2, barren inflorescence2-like serine/threonine protein kinase, rice ortholog of PINOID, OsPINOID, PINOID	BARREN INFLORESCENCE2-LIKE SERINE/THREONINE PROTEIN KINASE	ospid, ospid-1, ospid-2, ospidb-c1, ospidb-c2	12	Q2QM77. GO:2000012 regulation of auxin polar transport, GO:0080167 response to karrikin.	 Reproductive organ - Inflorescence,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0614600	LOC_Os12g42020.1				GO:0009555 - pollen development, GO:0009958 - positive gravitropism, GO:0009926 - auxin polar transport, GO:0009908 - flower development, GO:0009734 - auxin mediated signaling pathway, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0048479 - style development, GO:0048480 - stigma development, GO:0048364 - root development, GO:0009986 - cell surface, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048767 - root hair elongation, GO:0048825 - cotyledon development, GO:0048367 - shoot development, GO:0048766 - root hair initiation, GO:0009651 - response to salt stress	TO:0000485 - sterility related trait, TO:0006010 - lodicule number, TO:0000225 - stamen number, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance	
7333	CAB1R	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b	CHLOROPHYLL A/B BINDING PROTEIN 1R	"\"Chlorophyll a-b binding protein 1, chloroplast precursor\", \"Chlorophyll a-b binding protein 1, chloroplast\", LHCII type I CAB-1, LHCII type I CAB, chlorophyll a/b-binding protein 1, light-harvesting chlorophyll a/b binding protein 1, PSII Cab1"	CHLOROPHYLL A/B BINDING PROTEIN 1R		9	P12330. X13908. D00641. a clock-controlled gene. Lhcb1b in Yamatani et al. 2018.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os09g0346500	LOC_Os09g17740.1				GO:0016168 - chlorophyll binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0018298 - protein-chromophore linkage, GO:0000287 - magnesium ion binding, GO:0009523 - photosystem II, GO:0009765 - photosynthesis, light harvesting, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0009522 - photosystem I, GO:0007623 - circadian rhythm, GO:0009658 - chloroplast organization, GO:0009637 - response to blue light, GO:0010114 - response to red light	TO:0002715 - chloroplast development trait, TO:0000159 - blue light sensitivity, TO:0000158 - red light sensitivity	
7334	CDSP32	CDSP32	CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN	chloroplastic drought-induced stress protein of 32 kD	CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN				 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation	TO:0002657 - oxidative stress	
7335	CENH3	CENH3, CenH3	CENTROMERIC HISTONE 3C	centromeric histone H3, centromere-specific histone H3, centromere-specific H3 histone, centromere-specific histone H3	CENTROMERIC HISTONE 3C		5	AY438639. GQ849328-GQ849334 (wild rice species). HQ123577-HQ123579 (wild rice species).	 Biochemical character	Os05g0489800 	LOC_Os05g41080.2, LOC_Os05g41080.1				GO:0000775 - chromosome, centromeric region, GO:0009567 - double fertilization forming a zygote and endosperm, GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0005515 - protein binding		
7336	CPN60	chaperonin 60	CHAPERONIN 60		CHAPERONIN 60				 Biochemical character						GO:0006457 - protein folding, GO:0016465 - chaperonin ATPase complex		
7338	CSLD1	csld1, OsCSLD1, OsCslD1	CELLULOSE SYNTHASE LIKE D1	Cellulose Synthase-Like D1, Cellulose synthase-like protein D1	CELLULOSE SYNTHASE LIKE D1	oscsld1	10	EC=2.4.1.- A2ZAK8(indica). Q8W3F9(japonica). DAA01752. BK000089. LOC_Os10g42750.	 Biochemical character	Os10g0578200	LOC_Os10g42750.1				GO:0005794 - Golgi apparatus, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0007047 - cell wall organization, GO:0016020 - membrane, GO:0016760 - cellulose synthase (UDP-forming) activity		
7339	CYCD3	CYCD3	D-TYPE CYCLIN 3		D-TYPE CYCLIN 3				 Biochemical character						GO:0051301 - cell division, GO:0005634 - nucleus, GO:0007049 - cell cycle		
7340	CYCD7	CYCD7	D-TYPE CYCLIN 7		D-TYPE CYCLIN 7				 Biochemical character						GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0005634 - nucleus		
7342	EXPA7	OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26	ALPHA-EXPANSIN 7	Expansin-A7, Alpha-expansin-7	ALPHA-EXPANSIN 7		3	Q852A1. AF247164(cDNA), AF394547(Genomic)	 Biochemical character	Os03g0822000	LOC_Os03g60720.1				GO:0005618 - cell wall, GO:0019898 - extrinsic to membrane, GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0016023 - cytoplasmic membrane-bounded vesicle		
7343	EXPB12	OsEXPB12, OsaEXPb1.17	BETA-EXPANSIN 12	Expansin-B12, Beta-expansin-12	BETA-EXPANSIN 12		3	Q10G40.	 Biochemical character	Os03g0645000	LOC_Os03g44290.3, LOC_Os03g44290.2, LOC_Os03g44290.1				GO:0019898 - extrinsic to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0007047 - cell wall organization, GO:0019953 - sexual reproduction, GO:0005576 - extracellular region, GO:0005618 - cell wall		
7349	GH3-8	OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2	GH3-8				7	EF103572. Q0D4Z6, A3BLS0. a flower-specific Nt-gh3 type gene. OsGH3-2 in Du et al. 2015. LOC_Os07g40290.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os07g0592600	LOC_Os07g40290.1				GO:0009651 - response to salt stress, GO:0006955 - immune response, GO:0010279 - indole-3-acetic acid amido synthetase activity, GO:0016874 - ligase activity, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009852 - auxin catabolic process	TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000172 - jasmonic acid sensitivity, TO:0002672 - auxin content	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009066 - anther 
7353	GID1	gid1, OsGID1, Thl, Os GID1	GIBBERELLIN INSENSITIVE DWARF1	GIBBERELLIN-INSENSITIVE DWARF1, Gibberellin receptor GID1, Gibberellin-insensitive dwarf protein 1, Protein GIBBERELLIN INSENSITIVE DWARF1, Thumbelina, GA-insensitive dwarf 1	GIBBERELLIN-INSENSITIVE DWARF PROTEIN 1	gid1, gid1-1, gid1-2, gid1-3, gid1-4, gid1-7, gid1-8, thl-m	5	SOLUBLE GA RECEPTOR. Gibberellin receptor protein. EC=3.-.-.- Os05g0407500. LOC_Os05g33730. Q6L545. GRO:0007001; rice plant growth stage. GO:2000377: regulation of reactive oxygen species metabolic process.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0407500	LOC_Os05g33730.1	GR:0020050			GO:0016787 - hydrolase activity, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0008152 - metabolic process, GO:0009739 - response to gibberellin stimulus, GO:0004872 - receptor activity, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0010271 - regulation of chlorophyll catabolic process, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0006109 - regulation of carbohydrate metabolic process, GO:0014001 - sclerenchyma cell differentiation, GO:2000037 - regulation of stomatal complex patterning, GO:2000038 - regulation of stomatal complex development	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000286 - submergence sensitivity, TO:0000566 - stomatal frequency, TO:0000495 - chlorophyll content, TO:0000291 - carbohydrate content, TO:0000470 - vascular tissue related trait, TO:0000074 - blast disease, TO:0000135 - leaf length	
7355	HSA32	Hsa32, OsPPS1	HEAT-STRESS-ASSOCIATED 32KD PROTEIN	heat-stress-associated 32-kD protein, rice ortholog of Hsa32, Hsa32 homolog, phosphosulfolactate synthase 1	HEAT-STRESS-ASSOCIATED 32KD PROTEIN		6	AY623907. LOC_Os06g46900. an OsHIR1-interacting protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0682900 	LOC_Os06g46900.4, LOC_Os06g46900.3, LOC_Os06g46900.2, LOC_Os06g46900.1				GO:0005618 - cell wall, GO:0019295 - coenzyme M biosynthetic process, GO:0010286 - heat acclimation, GO:0006950 - response to stress, GO:0004252 - serine-type endopeptidase activity, GO:0010608 - posttranscriptional regulation of gene expression		
7356	HSP70	OsHSP70, OsEnS-45, EnS-45	HEAT SHOCK PROTEIN 70KD	endosperm-specific gene 45	HEAT SHOCK PROTEIN 70KD		3	LOC_Os03g16920.	 Tolerance and resistance - Stress tolerance	Os03g0277300	LOC_Os03g16920.1				GO:0042026 - protein refolding, GO:0009408 - response to heat, GO:0003773 - heat shock protein activity		
7360	MCM10	OsMCM10	MINI-CHROMOSOME MAINTENANCE PROTEIN 10	mini-chromosome maintenance protein 10	MINI-CHROMOSOME MAINTENANCE PROTEIN 10		9	putative MCM10 homologs in rice.LOC_Os09g36820	 Biochemical character	Os09g0539400	LOC_Os09g36820.1				GO:0006260 - DNA replication, GO:0005524 - ATP binding, GO:0003677 - DNA binding		
7361	MCM8	OsMCM8	MINI-CHROMOSOME MAINTENANCE PROTEIN 8	mini-chromosome maintenance protein 8	MINI-CHROMOSOME MAINTENANCE PROTEIN 8		5		 Biochemical character	Os05g0464100	LOC_Os05g38850.1				GO:0006260 - DNA replication, GO:0005524 - ATP binding, GO:0003677 - DNA binding		
7362	MCM9	OsMCM9	MINI-CHROMOSOME MAINTENANCE PROTEIN 9	mini-chromosome maintenance protein 9	MINI-CHROMOSOME MAINTENANCE PROTEIN 9		6	LOC_Os06g11500	 Biochemical character	Os06g0218500	LOC_Os06g11500.1				GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0006260 - DNA replication		
7363	MEL1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c	MEIOSIS ARRESTED AT LEPTOTENE 1	MEIOSIS ARRESTED AT LEPTOTENE1, Protein argonaute MEL1, Protein MEIOSIS ARRESTED AT LEPTOTENE 1	PROTEIN ARGONAUTE MEL1	mel1	3	Argonaute (AGO) family protein. Os03g0800200. LOC_Os03g58600. Q851R2. PO:0020047; microsporocyte ; PO:0006015; female archesporial cell ; PO:0009049; inflorescence ; PO:0006442; anther (sensu Poaceae) ; PO:0006014; male archesporial cell ; PO:0006444; microsporangium (sensu Poaceae) ; PO:0006463; megasporocyte (sensu Poaceae) ; PO:0000018; ovule primordium. GRO:0007157; panicle development.  a germline-specific Argonaute protein.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0800200	LOC_Os03g58600.1	GR:0080042			GO:0005737 - cytoplasm, GO:0045836 - positive regulation of meiosis, GO:0007281 - germ cell development, GO:0005739 - mitochondrion, GO:0005731 - nucleolus organizer region, GO:0006396 - RNA processing, GO:0009561 - megagametogenesis, GO:0033169 - histone H3-K9 demethylation, GO:0035197 - siRNA binding, GO:0007143 - female meiosis, GO:0005730 - nucleolus, GO:0007140 - male meiosis, GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA, GO:0055046 - microgametogenesis	TO:0000437 - male sterility, TO:0000053 - pollen sterility, TO:0000727 - sporogenesis, TO:0000358 - female sterility, TO:0000436 - spikelet sterility	PO:0000018 - ovule primordium , PO:0006014 - male archesporial cell , PO:0006015 - female archesporial cell , PO:0009066 - anther , PO:0025277 - pollen sac , PO:0000431 - megasporocyte , PO:0009049 - inflorescence , PO:0020047 - microsporocyte 
7370	NH1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2	NPR1 HOMOLOG 1	NPR1-like 1, NPR1 homologue 1, nonexpresser of PR genes 1, Arabidopsis NPR1 homolog 1, non-expressor of pathogenesis-related gene 1, Arabidopsis NPR1 homologue 1, pathogenesis-related gene 2, nonexpressor of PR genes 1, Nonexpressor of Pathogenesis-Related Genes1, NONEXPRESSOR OF PATHOGENESIS-RELATED1 HOMOLOG1, NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1, non-expressor pathogenesis-related 1	NPR1 HOMOLOG 1	osnpr1, osnpr1-1, osnpr1-2	1	a rice ortholog of Arabidopsis thaliana NPR1 (NON-EXPRESSOR OF PR 1). AY923983. DQ450948. GU722159, GU722160. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000031: regulation of salicylic acid mediated signaling pathway. XP_015622114.1	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0194300	LOC_Os01g09800.1				GO:0002213 - defense response to insect, GO:0009734 - auxin mediated signaling pathway, GO:0006952 - defense response, GO:0048364 - root development, GO:0010942 - positive regulation of cell death, GO:0006950 - response to stress, GO:0031348 - negative regulation of defense response, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009625 - response to insect, GO:0016563 - transcription activator activity, GO:0009408 - response to heat, GO:0009611 - response to wounding, GO:0009682 - induced systemic resistance, GO:0050832 - defense response to fungus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0008219 - cell death, GO:0010112 - regulation of systemic acquired resistance, GO:0010200 - response to chitin	TO:0000424 - brown planthopper resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000112 - disease resistance, TO:0000074 - blast disease, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0000445 - seed number, TO:0000181 - seed weight, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0007520 - root development stage , PO:0007089 - stem elongation stage 
7371	NOC3	NOC3	NUCLEOLAR COMPLEX-ASSOCIATED PROTEIN 3	Nucleolar complex-associated protein 3	NUCLEOLAR COMPLEX-ASSOCIATED PROTEIN 3		6		 Biochemical character	Os06g0498500	LOC_Os06g30320.1				GO:0006260 - DNA replication		
7373	NPP1	OsNPP1, OsPAP27b, PAP27B	NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1	Nucleotide Pyrophosphatase/Phosphodiesterase 1, Purple acid phosphatase 27b	NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1	nnp1	8	A nucleotide pyrophosphatase/phosphodiesterase enzyme. NPP1 exhibits a hydrolyzing activity toward ADP-glucose linked to the starch biosynthesis. AB100451.	 Biochemical character,  Seed - Physiological traits - Storage substances	Os08g0531000	LOC_Os08g41880.1				GO:0005618 - cell wall, GO:0004528 - phosphodiesterase I activity, GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity, GO:0004551 - nucleotide diphosphatase activity	TO:0000696 - starch content, TO:0000233 - root volume, TO:0000207 - plant height	
7374	NTRC	OsNTRC, NtrC, OsGRL15	CHLOROPLAST NADPH THIOREDOXIN REDUCTASE	NADPH thioredoxin reductase, GRX-like protein 15, glutaredoxin-like protein 15, chloroplastic type NTR, chloroplastic type NADPH-dependent thioredoxin reductase	CHLOROPLAST NADPH THIOREDOXIN REDUCTASE		7	AJ582621. Q70G58.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0657900	LOC_Os07g46410.1				GO:0009570 - chloroplast stroma, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0046686 - response to cadmium ion, GO:0022900 - electron transport chain, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019430 - removal of superoxide radicals, GO:0010581 - regulation of starch biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0042744 - hydrogen peroxide catabolic process, GO:0045454 - cell redox homeostasis, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0010027 - thylakoid membrane organization, GO:0050660 - FAD binding, GO:0008047 - enzyme activator activity, GO:0009507 - chloroplast	TO:0002657 - oxidative stress	
7375	NYC1	nyc1, OsNYC1	NON-YELLOW COLORING 1	Chlorophyl b degrading enzyme, Chlase, Non-Yellow Coloring 1, non-yellow coloring1, Probable chlorophyll(ide) b reductase NYC1, chloroplastic, Protein NON-YELLOW COLORING 1, short-chain dehydrogenase/reductase NYC1	SHORT-CHAIN DEHYDROGENASE/REDUCTASE NYC1	nyc1-1, nyc1-2	1	LOC_Os01g12710. AB255025. Q5N800. nyc1 mutant shows the stay-green phenotype.  MEMBRANE-LOCALIZED SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR). PO:0020104; leaf sheath ; PO:0009038; palea ; PO:0009037; lemma ; PO:0020122; inflorescence axis ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os01g0227100	LOC_Os01g12710.2, LOC_Os01g12710.1	GR:0101290			GO:0009536 - plastid, GO:0016491 - oxidoreductase activity, GO:0042170 - plastid membrane, GO:0005488 - binding, GO:0009535 - chloroplast thylakoid membrane, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence, GO:0016021 - integral to membrane, GO:0034256 - chlorophyll(ide) b reductase activity, GO:0055114 - oxidation reduction	TO:0000599 - enzyme activity, TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence, TO:0002712 - stay green trait	PO:0009025 - vascular leaf , PO:0009037 - lemma , PO:0009038 - palea , PO:0020104 - leaf sheath , PO:0020122 - inflorescence axis , PO:0001054 - 4 leaf senescence stage 
7379	KRP1	OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1	KIP-RELATED PROTEIN 1	Cyclin-dependent kinase inhibitor 1, KIP-related protein 1, inhibitor of cyclin-dependent kinase 1	KIP-RELATED PROTEIN 1		2	A2X9W8(indica), Q6Z6G5(japonica). DQ229362. AU075786.	 Biochemical character	Os02g0762400	LOC_Os02g52480.1				GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0005634 - nucleus, GO:0007050 - cell cycle arrest, GO:0051301 - cell division, GO:0007067 - mitosis		
7380	BOR1	OsBOR1	EFFLUX BORON TRANSPORTER 1	Boron transporter 1	EFFLUX BORON TRANSPORTER 1	osbor1-1, osbor1-2	12		 Biochemical character	Os12g0566000	LOC_Os12g37840.2, LOC_Os12g37840.1	GR:0101271			GO:0046713 - boron transport, GO:0016021 - integral to membrane, GO:0005452 - inorganic anion exchanger activity, GO:0046715 - boron transporter activity		
7385	ACO7	OsACO7	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7	ACC oxidase 7	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0580500	LOC_Os01g39860.1				GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors		
7386	BRL1	OsBRL1	BRI1 LIKE  1	BRI1-like receptor kinase 1	BRI1-LIKE RECEPTOR KINASE 1 		9	BAD34326. putative systemin receptor SR160 precursor, Brassinosteroid LRR receptor kinase. a plasma membrane-located BR receptor. a rice ortholog of Arabidopsis BRL3.	 Other	Os09g0293500	LOC_Os09g12240.1				GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0004872 - receptor activity, GO:0005524 - ATP binding, GO:0009729 - detection of brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling		
7387	BRL3	OsBRL3	BRI1 LIKE 3	BRI1-like receptor kinase 3	BRI1-LIKE RECEPTOR KINASE 3 		8	BAD01717. putative brassinosteroid receptor, leucine-rich repeat receptor-like protein kinase. a plasma membrane-located BR receptor.	 Other	Os08g0342300	LOC_Os08g25380.1				GO:0004672 - protein kinase activity, GO:0009742 - brassinosteroid mediated signaling, GO:0004872 - receptor activity, GO:0009729 - detection of brassinosteroid stimulus, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
7388	CIPK01	OsCIPK01, CIPK1, OsCIPK1	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1	CBL-interacting protein kinase 1	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1		1	EC=2.7.11.1 Q9LGV5. AU056086, AU056087. LOC_Os01g18800.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0292200	LOC_Os01g18800.5, LOC_Os01g18800.4, LOC_Os01g18800.3, LOC_Os01g18800.2, LOC_Os01g18800.1				GO:0009413 - response to flooding, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0030145 - manganese ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004713 - protein tyrosine kinase activity	TO:0000432 - temperature response trait, TO:0000303 - cold tolerance, TO:0000114 - flooding related trait	
7389	CIPK02	OsCIPK02, CIPK2, OsCIPK2	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2	CBL-interacting protein kinase 2	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2		7	EC=2.7.11.1 Q7X996. LOC_Os07g48100.	 Biochemical character	Os07g0678600	LOC_Os07g48100.1				GO:0006468 - protein amino acid phosphorylation, GO:0030145 - manganese ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction		
7390	CIPK03	OsCIPK03, CIPK3, OsCIPK3	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 3	CBL-interacting protein kinase 3	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 3		7	EC=2.7.11.1 Q8LIG4. LOC_Os07g48760.	 Biochemical character	Os07g0687000	LOC_Os07g48760.1				GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0005739 - mitochondrion		
7391	CIPK04	OsCIPK04, CIPK4, OsCIPK4	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 4	CBL-interacting protein kinase 4	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 4		12	EC=2.7.11.1 Q2QMI0. LOC_Os12g41090.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0603700	LOC_Os12g41090.1				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
7392	CIPK05	OsCIPK05, CIPK5, OsCIPK5, OsSTA7	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5	CBL-interacting protein kinase 5	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5		1	EC=2.7.11.1 Q9LWM4. LOC_Os01g10890. a mature anther-preferentially expressed gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0206700	LOC_Os01g10890.1				GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0006468 - protein amino acid phosphorylation, GO:0030145 - manganese ion binding, GO:0009413 - response to flooding, GO:0004674 - protein serine/threonine kinase activity	TO:0000114 - flooding related trait, TO:0000303 - cold tolerance	PO:0009066 - anther 
7393	CIPK06	OsCIPK06, CIPK6, OsCIPK6	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 6	CBL-interacting protein kinase 6	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 6		8	EC=2.7.11.1 Q6Z9F4. LOC_Os08g34240.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0441100	LOC_Os08g34240.1				GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
7394	CIPK07	OsCIPK07, CIPK7, OsCIPK7	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 7	CBL-interacting protein kinase 7	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 7		3	EC=2.7.11.1 Q75GK4. LOC_Os03g43440.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0634400	LOC_Os03g43440.1				GO:0005739 - mitochondrion, GO:0030145 - manganese ion binding, GO:0009414 - response to water deprivation, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
7395	CIPK08	OsCIPK08, CIPK8, OsCIPK8	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 8	CBL-interacting protein kinase 8	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 8		1	EC=2.7.11.1 Q5JLD8. LOC_Os01g35184.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0536000	LOC_Os01g35184.2, LOC_Os01g35184.1				GO:0009413 - response to flooding, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0030145 - manganese ion binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000114 - flooding related trait	
7396	CIPK09	OsCIPK09, CIPK9, OsCIPK9	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 9	CBL-interacting protein kinase 9	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 9		3	EC=2.7.11.1 Q10SC8. LOC_Os03g03510.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0126800	LOC_Os03g03510.2, LOC_Os03g03510.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0009414 - response to water deprivation, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
7397	CIPK10	OsCIPK10, CIPK10, OsCIPK10	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 10	CBL-interacting protein kinase 10	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 10		3	EC=2.7.11.1 Q10LQ2. LOC_Os03g22050.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0339900	LOC_Os03g22050.4, LOC_Os03g22050.3, LOC_Os03g22050.2, LOC_Os03g22050.1				GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding	TO:0000276 - drought tolerance	
7398	CIPK11	OsCIPK11, CIPK11, OsMSURPK2, OsCIPK11	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 11	CBL-interacting protein kinase 11	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 11		1	EC=2.7.11.1 Q0JI49. LOC_Os01g60910.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0824600	LOC_Os01g60910.2, LOC_Os01g60910.1				GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding		
7400	CIPK13	OsCIPK13	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 13	Putative CBL-interacting protein kinase 13	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 13		1	EC=2.7.11.1 Q5QNM6. LOC_Os01g10870.	 Biochemical character	Os01g0206300	LOC_Os01g10870.1				GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
7401	CIPK14	OsCIPK14	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14	CBL-interacting protein kinase 14	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14		12	EC=2.7.11.1 Q2QYM3. AB264036. LOC_Os12g02200.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0113500	LOC_Os12g02200.2, LOC_Os12g02200.1				GO:0007165 - signal transduction, GO:0009413 - response to flooding, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000114 - flooding related trait	
7402	CIPK15	OsCIPK15	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15	CBL-interacting protein kinase 15	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15		11	EC=2.7.11.1 Q2RBF0. AB264037. LOC_Os11g02240.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0113700	LOC_Os11g02240.1				GO:0030145 - manganese ion binding, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0009413 - response to flooding	TO:0000114 - flooding related trait	
7403	CIPK16	OsCIPK16	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16	CBL-interacting protein kinase 16	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16		9	EC=2.7.11.1 Q6ERS4. LOC_Os09g25090.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0418000	LOC_Os09g25090.1				GO:0005524 - ATP binding, GO:0030145 - manganese ion binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
7404	CIPK17	OsCIPK17	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17	CBL-interacting protein kinase 17	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17		5	EC=2.7.11.1 Q75L42. LOC_Os05g04550.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0136200	LOC_Os05g04550.1				GO:0009651 - response to salt stress, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
7405	CIPK18	OsCIPK18	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 18	CBL-interacting protein kinase 18	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 18		5	EC=2.7.11.1 Q5W736. LOC_Os05g26820.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0332300	LOC_Os05g26820.1				GO:0006468 - protein amino acid phosphorylation, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	
7406	PK4	OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19	PROTEIN KINASE 4	protein kinase 4, CBL-interacting protein kinase 19, CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 19	PROTEIN KINASE 4		5	EC=2.7.11.1 Q68Y49. AB011967. LOC_Os05g43840.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0514200	LOC_Os05g43840.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0009413 - response to flooding	TO:0000276 - drought tolerance, TO:0000114 - flooding related trait, TO:0006001 - salt tolerance	
7407	CIPK20	OsCIPK20	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 20	CBL-interacting protein kinase 20	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 20		5	EC=2.7.11.1 Q60EY8. LOC_Os05g11790.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0208100	LOC_Os05g11790.1				GO:0030145 - manganese ion binding, GO:0009413 - response to flooding, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000114 - flooding related trait	
7408	CIPK21	OsCIPK21	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 21	CBL-interacting protein kinase 21	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 21		7	EC=2.7.11.1 Q0D4B2. LOC_Os07g44290.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0637000	LOC_Os07g44290.1				GO:0009409 - response to cold, GO:0009536 - plastid, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030145 - manganese ion binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
7409	CIPK22	OsCIPK22	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 22	CBL-interacting protein kinase 22	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 22		5	EC=2.7.11.1 Q5KQF5. LOC_Os05g26940.	 Biochemical character	Os05g0334750	LOC_Os05g26940.1				GO:0006468 - protein amino acid phosphorylation, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
7410	CIPK23	OsCIPK23, Os-CIPK23	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23	CBL-interacting protein kinase 23, CBL-Interacting Protein Kinase23	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23		7	EC=2.7.11.1 Q6ZLP5. LOC_Os07g05620.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0150700	LOC_Os07g05620.2, LOC_Os07g05620.1				GO:0030145 - manganese ion binding, GO:0005739 - mitochondrion, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000514 - potassium uptake	
7412	CIPK24	OsCIPK24, SOS2, OsSOS2	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 24	CBL-interacting protein kinase 24, salt overly sensitive 2, low-cesium rice mutant 1	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 24	lcs1	6	EC=2.7.11.1 Q69Q47. LOC_Os06g40370.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0606000	LOC_Os06g40370.1				GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009705 - plant-type vacuole membrane, GO:0009651 - response to salt stress		
7413	CIPK25	OsCIPK25	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 25	CBL-interacting protein kinase 25	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 25		6	EC=2.7.11.1 Q5Z6X0. LOC_Os06g35160.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0543400	LOC_Os06g35160.1				GO:0006468 - protein amino acid phosphorylation, GO:0009651 - response to salt stress, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
7414	CIPK26	OsCIPK26	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 26	CBL-interacting protein kinase 26	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 26		2	EC=2.7.11.1 Q6H7U5. LOC_Os02g06570.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0161000	LOC_Os02g06570.2, LOC_Os02g06570.1				GO:0009409 - response to cold, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance	
7415	CIPK27	OsCIPK27	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 27	Putative CBL-interacting protein kinase 27	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 27		9	EC=2.7.11.1 Q6ERS0. LOC_Os09g25100.	 Biochemical character	Os09g0418500	LOC_Os09g25110.1, LOC_Os09g25100.1				GO:0007165 - signal transduction, GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
7416	CIPK28	OsCIPK28	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 28	CBL-interacting protein kinase 28	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 28		5	EC=2.7.11.1 A3B529. LOC_Os05g39870.	 Biochemical character	Os05g0476350	LOC_Os05g39870.1				GO:0006468 - protein amino acid phosphorylation, GO:0030145 - manganese ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction		
7417	CIPK29	OsCIPK29	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 29	CBL-interacting protein kinase 29	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 29		7	EC=2.7.11.1 Q7XIW5. LOC_Os07g48090.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0678300	LOC_Os07g48090.1				GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
7418	CIPK30	OsCIPK30	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30	CBL-interacting protein kinase 30	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30		1	EC=2.7.11.1 Q5JLQ9. LOC_Os01g55440.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0759200	LOC_Os01g55440.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009413 - response to flooding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding	TO:0000114 - flooding related trait	
7420	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK	DOESN'T MAKE INFECTIONS 3	DOESN'T MAKE INFECTIONS3, calcium and calmodulin-dependent protein kinase 1, Ca2+/calmodulin (CaM)-dependent protein kinase, CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE		dmi3	5	Ca2+/calmodulin-dependent protein kinase. AC097175. Q6AVM3.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0489900	LOC_Os05g41090.1				GO:0042542 - response to hydrogen peroxide, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0019722 - calcium-mediated signaling, GO:0016021 - integral to membrane, GO:0010726 - positive regulation of hydrogen peroxide metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0006979 - response to oxidative stress, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004683 - calmodulin-dependent protein kinase activity	TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity	
7422	HIPM	OsHIPM	HRPN-INTERACTING PROTEIN FROM MALUS	Oryza sativa HrpN-interacting protein from Malus, HIPM ortholog											GO:0045926 - negative regulation of growth		
7423	HKT7	OsHKT7, OsHKT1;4, HKT1;4	HIGH-AFFINITY K+ TRANSPORTER 7	Oryza sativa High-affinity K+ Transporter 7, Probable cation transporter HKT7	HIGH-AFFINITY K+ TRANSPORTER 7		4	Q7XPF7, AJ491853. JF920143, JF920144, JF920145, JF920146, JF920142.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0607600	LOC_Os04g51830.1				GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0030955 - potassium ion binding, GO:0031402 - sodium ion binding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006814 - sodium ion transport	TO:0006001 - salt tolerance	PO:0020104 - leaf sheath , PO:0009047 - stem 
7424	HMA9	OsHMA9, oshma9-1, oshma9-2, HMA9	HEAVY METAL ATPASE 9	Oryza sativa heavy metal ATPase 9, HEAVY METAL ATPASE 9, heavy metal P-Type ATPase 9	HEAVY METAL ATPASE 9		6	GO:0035434:copper ion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0665800	LOC_Os06g45500.1				GO:0046688 - response to copper ion, GO:0016021 - integral to membrane, GO:0009873 - ethylene mediated signaling pathway, GO:0046873 - metal ion transmembrane transporter activity, GO:0043682 - copper-transporting ATPase activity, GO:0005794 - Golgi apparatus, GO:0010119 - regulation of stomatal movement	TO:0000021 - copper sensitivity	
7428	HPL3	OsHPL3, CYP74B2	HYDROPEROXIDE LYASE 3		HYDROPEROXIDE LYASE 3	hpl3-1	2	LOC_Os02g02000. AY340220.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os02g0110200	LOC_Os02g02000.1				GO:0051607 - defense response to virus, GO:0020037 - heme binding, GO:0009941 - chloroplast envelope, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016829 - lyase activity, GO:0009055 - electron carrier activity, GO:0009611 - response to wounding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0010597 - green leaf volatile biosynthetic process	TO:0000396 - grain yield, TO:0000148 - viral disease resistance	
7429	IAMT1	OsIAMT1, OsSABATH4	INDOL-3-ACETIC ACID METHYTRANSFERASE 1	Oryza sativa indole-3-acetic acid methyltransferase 1	INDOL-3-ACETIC ACID METHYLTRANSFERASE 1		4	EU375746. Q0J998.	 Biochemical character	Os04g0665200	LOC_Os04g56950.1				GO:0008168 - methyltransferase activity, GO:0051749 - indole acetic acid carboxyl methyltransferase activity, GO:0010252 - auxin homeostasis, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046872 - metal ion binding, GO:0009944 - polarity specification of adaxial/abaxial axis		
7431	MADS51	OsMADS51, OsMADS65, MADS65	MADS BOX GENE 51	MADS box gene51	MADS-BOX TRANSCRIPTION FACTOR 51		1	OsMADS65 in Aora et al. 2007.	 Reproductive organ - Heading date,  Other	Os01g0922800	LOC_Os01g69850.1				GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus		
7432	MIR156B	miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p	MICRORNA156B	micro RNA 156b, microRNA156b, osa-miRNA156b			1	OsmiR156b and OsmiR156c are mapped to the same transcription unit (accession no. AK110797). miRBase accession: MI0000654. PO:0000009; cultured callus ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007192; callus promotion ; GRO:0007193; plantlet regeneration. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. EU004233-EU004275 (Japonica, Indica and O. rufipogon)LM383043 LM379142	 Tolerance and resistance - Disease resistance,  Other			GR:0100702			GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	PO:0000009 - cultured plant callus , PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
7433	SDT	miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p	SEMIDWARF AND HIGH-TILLERING	micro RNA 156h, microRNA156h, osa-miRNA156h, semidwarf and high-tillering		sdt	6	Precursors of OsmiR156h and OsmiR156j are from the same transcription unit AK103769(Os06g0649600). miRBase accession: MI0000660. PO:0000009; cultured callus ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007192; callus promotion ; GRO:0007193; plantlet regeneration. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. LM383293, LM383292. OsmiR156h is the sequence responsible for the sdt QTL (Zhao et al. 2015).	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other			GR:0100709			GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex	TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0000329 - tillering ability, TO:0000050 - inflorescence branching, TO:0000068 - lodging incidence, TO:0000074 - blast disease	PO:0000009 - cultured plant callus , PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
7436	SOS1	OsSOS1, OsNHA1	SALT OVERLY SENSITIVE 1	Oryza sativa salt overly sensitive 1, Na+/H+ antiporter 1			12	AY785147.	 Tolerance and resistance - Stress tolerance	Os12g0641100	LOC_Os12g44360.4, LOC_Os12g44360.3, LOC_Os12g44360.2, LOC_Os12g44360.1				GO:0006814 - sodium ion transport, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0010163 - high-affinity potassium ion import, GO:0010348 - lithium:hydrogen antiporter activity, GO:0010352 - lithium ion export, GO:0009414 - response to water deprivation, GO:0055075 - potassium ion homeostasis, GO:0055078 - sodium ion homeostasis, GO:0055085 - transmembrane transport, GO:0015385 - sodium:hydrogen antiporter activity, GO:0016021 - integral to membrane, GO:0042542 - response to hydrogen peroxide	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
7437	SPT16	Osspt16	SUPPRESSOR OF TY16	Oryza sativa suppressor of Ty 16 (homolog of the yeast. spt16 gene), FACT complex subunit SPT16, Facilitates chromatin transcription complex subunit SPT16	FACT COMPLEX SUBUNIT SPT16		4	Q7X923.	 Other	Os04g0321600	LOC_Os04g25550.1				GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0006260 - DNA replication, GO:0005694 - chromosome		
7438	YUCCA1	OsYUCCA1, OsYUC1	YUCCA-LIKE GENE 1	(YUCCA-like gene)			1	LOC_Os01g45760. an orthologue of AtYUCCA.	 Biochemical character	Os01g0645400	LOC_Os01g45760.2, LOC_Os01g45760.1				GO:0009737 - response to abscisic acid stimulus, GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity	TO:0000615 - abscisic acid sensitivity	
7439	YUCCA2	OsYUCCA2, OsYUC2	YUCCA-LIKE GENE 2	(YUCCA-like gene)			5	LOC_Os05g45240. an orthologue of AtYUCCA.	 Biochemical character	Os05g0528600	LOC_Os05g45240.1				GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity		
7440	YUCCA3	OsYUCCA3, OsYUC3	YUCCA-LIKE GENE 3	(YUCCA-like gene)			1	LOC_Os01g53200. Os01g0732600 (in Ncbi and UniProt). an orthologue of AtYUCCA.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0732700	LOC_Os01g53200.1				GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity, GO:0016491 - oxidoreductase activity, GO:0009629 - response to gravity	TO:0002693 - gravity response trait	
7441	YUCCA4	OsYUCCA4, OsYUC4, YUC4	YUCCA-LIKE GENE 4	(YUCCA-like gene)			1	LOC_Os01g12490. an orthologue of AtYUCCA.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0224700	LOC_Os01g12490.1				GO:0009737 - response to abscisic acid stimulus, GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity, GO:0048653 - anther development, GO:0009901 - anther dehiscence	TO:0002672 - auxin content, TO:0000615 - abscisic acid sensitivity	PO:0009066 - anther , PO:0001004 - anther development stage 
7442	YUCCA5	OsYUCCA5, OsYUC5, YUC5	YUCCA-LIKE GENE 5	(YUCCA-like gene)			12	LOC_Os12g32750. an orthologue of AtYUCCA.	 Biochemical character	Os12g0512000	LOC_Os12g32750.1				GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity		
7443	YUCCA6	OsYUCCA6, OsYUC6	YUCCA-LIKE GENE 6	(YUCCA-like gene)			7	LOC_Os07g25540. an orthologue of AtYUCCA.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0437000	LOC_Os07g25540.1				GO:0004499 - flavin-containing monooxygenase activity, GO:0009629 - response to gravity, GO:0009851 - auxin biosynthetic process	TO:0002693 - gravity response trait	
7444	YUCCA7	OsYUCCA7, OsYUC7	YUCCA-LIKE GENE 7	(YUCCA-like gene)			4	LOC_Os04g03980. an orthologue of AtYUCCA.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0128900	LOC_Os04g03980.1				GO:0009629 - response to gravity, GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity	TO:0002693 - gravity response trait	
7446	POLA2	POLA2	POLYMERASE (DNA DIRECTED), ALPHA 2	Polymerase (DNA directed), alpha 2	POLYMERASE (DNA DIRECTED), ALPHA 2				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7447	POLA3	POLA3	POLYMERASE (DNA DIRECTED), ALPHA 3	Polymerase (DNA directed), alpha 3	POLYMERASE (DNA DIRECTED), ALPHA 3				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7448	POLA4	POLA4	POLYMERASE (DNA DIRECTED), ALPHA 4	Polymerase (DNA directed), alpha 4	POLYMERASE (DNA DIRECTED), ALPHA 4				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7449	POLD3	POLD3	POLYMERASE (DNA DIRECTED), DELTA 3	polymerase (DNA-directed), delta 3	POLYMERASE (DNA DIRECTED), DELTA 3				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7450	POLD4	POLD4	POLYMERASE (DNA DIRECTED), DELTA 4	polymerase (DNA-directed), delta 4	POLYMERASE (DNA DIRECTED), DELTA 4				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7451	PHB	prohibitin	PROHIBITIN	prohibitin	PROHIBITIN				 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0005739 - mitochondrion		
7452	PSF1	PSF1	PARTNER OF SLD FIVE 1	partner of Sld five 1	PARTNER OF SLD FIVE 1		5	LOC_Os05g37980, GINS comples.	 Biochemical character	Os05g0453900	LOC_Os05g37980.1				GO:0006260 - DNA replication		
7453	PSF2	PSF2	PARTNER OF SLD FIVE 2	partner of Sld five 2	PARTNER OF SLD FIVE 2		1	LOC_Os01g14610, GINS complex.	 Biochemical character	Os01g0248600	LOC_Os01g14610.2, LOC_Os01g14610.1				GO:0006260 - DNA replication		
7454	PSF3	PSF3	PARTNER OF SLD FIVE 3	partner of Sld five 3	PARTNER OF SLD FIVE 3		8	LOC_Os08g17294, GINS complex.	 Biochemical character	Os08g0274700	LOC_Os08g17294.2, LOC_Os08g17294.1				GO:0006260 - DNA replication		
7457	RA2	ra2, Osra2, OsCrll4, CRL1L4, OsRA2	RAMOSA 2	ramosa2, ra2 ortholog, Crl1-like 4, OsRAMOSA2, OsRAMOSA 2			1	rice ortholog of maize ramosa2. AB200238. TO:0000847: panicle morphology trait. TO:0000784: inflorescence branch morphology trait.	 Reproductive organ - Inflorescence,  Other	Os01g0169400 	LOC_Os01g07480.2, LOC_Os01g07480.1				GO:0003700 - transcription factor activity, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010199 - organ boundary specification between lateral organs and the meristem, GO:0010229 - inflorescence development, GO:0005634 - nucleus, GO:0001709 - cell fate determination	TO:0000557 - secondary branch number, TO:0000621 - inflorescence development trait, TO:0000184 - seed anatomy and morphology trait, TO:0000630 - pedicel length	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0006327 - spikelet meristem , PO:0009105 - inflorescence branch meristem 
7460	RBOHB	rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB	RESPIRATORY BURST OXIDASE HOMOLOG B	Respiratory Burst Oxidase Homolog B, Respiratory Burst Oxidase Homologue B, NADPH oxidase 1	RESPIRATORY BURST OXIDASE HOMOLOG B		1	Q5ZAJ0, Q6J2K5. AY603975. GO:2000377: regulation of reactive oxygen species metabolic process. GO:2000379: positive regulation of reactive oxygen species metabolic process. LOC_Os01g25820. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0360200	LOC_Os01g25820.2, LOC_Os01g25820.1				GO:0043020 - NADPH oxidase complex, GO:0016021 - integral to membrane, GO:0016174 - NAD(P)H oxidase activity, GO:0043621 - protein self-association, GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009845 - seed germination, GO:0006952 - defense response, GO:0002238 - response to molecule of fungal origin, GO:0005886 - plasma membrane, GO:0010266 - response to vitamin B1, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0050832 - defense response to fungus, GO:0009566 - fertilization, GO:0009413 - response to flooding	TO:0000615 - abscisic acid sensitivity, TO:0000112 - disease resistance, TO:0000439 - fungal disease resistance, TO:0000074 - blast disease, TO:0000524 - submergence tolerance	
7464	RF1B	RF1b, Rf-1B, PPR7	RESTORATION OF FERTILITY 1B	pentatricopeptide repeat motif containing gene 7, PPR motif-containing gene 7			10	LOC_Os10g35640. DQ311054. AB470407, AB470409.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os10g0499500	LOC_Os10g35640.1				GO:0007275 - multicellular organismal development, GO:0005739 - mitochondrion	TO:0000497 - fertility restoration trait	
7467	RISBZ1	OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1	BZIP ACTIVATOR 1	bZIP transcription factor 58, rice seed b-Zipper 1, endosperm-specific gene 92, seed maturation factor 1	BZIP ACTIVATOR 1	osbzip58, osbzip58-1, osbzip58-2	7	bZIP Activator. endosperm-specific basic Leu zipper (bZIP) trans-activator. AB053472, AB053475, Q9AR01. LOC_Os07g08420. GO:2000034: regulation of seed maturation.	 Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Other	Os07g0182000	LOC_Os07g08420.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0009845 - seed germination, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0012501 - programmed cell death, GO:0010431 - seed maturation	TO:0000490 - protein composition related trait, TO:0000432 - temperature response trait, TO:0002661 - seed maturation	PO:0005360 - aleurone layer , PO:0007057 - 0 seed germination stage , PO:0007632 - seed maturation stage , PO:0009089 - endosperm 
7468	RNASEH2	RNASEH2	RIBONUCLEASE H2		RIBONUCLEASE H2				 Biochemical character						GO:0032299 - ribonuclease H2 complex, GO:0004523 - ribonuclease H activity		
7469	RPBF	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF	PROLAMIN BOX BINDING FACTOR	rice (Oryza sativa) prolamin box binding factor, pyrimidine box-binding protein, endosperm-specific gene 34, Dof zinc factor 10, Dof transcription factor 10, DNA BINDING WITH ONE FINGER 10	PROLAMIN BOX BINDING FACTOR		2	AB028131, AP005510. LOC_Os02g15350. OsDof10 in Lijavetzky et al. 2003 and Zhang et al. 2015. OsDOF1 in Wang et al. 2015.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0252400	LOC_Os02g15350.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0045449 - regulation of transcription, GO:0006952 - defense response, GO:0009414 - response to water deprivation	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance	
7470	RSp29	RSp29	SR PROTEIN RSp29	SR protein	SR PROTEIN RSp29				 Biochemical character						GO:0000398 - nuclear mRNA splicing, via spliceosome		
7473	RTBP1	rtbp1, TBP1, OsTBP1	TELOMERE BINDING PROTEIN 1	RICE TELOMERE BINDING PROTEIN 1, Telomere Binding Protein 1, Telomere-binding protein 1, Protein RTBP1, rice telomere-binding protein 1, telomere binding protein-1	TELOMERE BINDING PROTEIN 1		2	Os02g0817800. LOC_Os02g57270. Q9LL45. PO:0009051; spikelet ; PO:0020047; microsporocyte ; PO:0020123; root cap ; PO:0009029; stamen. GRO:0007047; 02-seedling ; GRO:0007222; stamen stage ST5-6 ; GRO:0007043; 01-germination.	 Biochemical character	Os02g0817800	LOC_Os02g57270.2, LOC_Os02g57270.1	GR:0101270			GO:0032204 - regulation of telomere maintenance, GO:0007133 - meiotic anaphase I, GO:0000781 - chromosome, telomeric region, GO:0003677 - DNA binding, GO:0003691 - double-stranded telomeric DNA binding, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0005739 - mitochondrion, GO:0045449 - regulation of transcription, GO:0042162 - telomeric DNA binding, GO:0042803 - protein homodimerization activity	TO:0000430 - germination rate, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000207 - plant height, TO:0000730 - mitotic cell cycle trait	PO:0009029 - stamen , PO:0009051 - spikelet , PO:0020047 - microsporocyte , PO:0020123 - root cap 
7475	SCAMP1	Scamp1, OsSCAMP1	SECRETORY CARRIER MEMBRANE PROTEIN 1	rice (Oryza sativa) homolog of animal SCAMP1, secretory carrier-associated membrane protein 1	SECRETORY CARRIER MEMBRANE PROTEIN 1		7	LOC_Os07g37740. A2YMP7(indica). Q8H5X5(japonica).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0564600	LOC_Os07g37740.1	GR:0101184			GO:0005886 - plasma membrane, GO:0005769 - early endosome, GO:0015031 - protein transport, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0006898 - receptor-mediated endocytosis, GO:0006897 - endocytosis, GO:0006970 - response to osmotic stress, GO:0016020 - membrane, GO:0031410 - cytoplasmic vesicle	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
7476	SCL26	SCL26	SR PROTEIN SCL26	SR protein, homolog of human SC35	SR PROTEIN SCL26				 Biochemical character						GO:0000398 - nuclear mRNA splicing, via spliceosome		
7477	SDG714	SDG714, OsSET5, OsSUVH4	SET DOMAIN GROUP PROTEIN 714	SET Domain Group Protein714, SET protein 5, SUVH Histone Methyltransferase 4	SET DOMAIN GROUP PROTEIN 714		1	a rice homolog of Su(var)3-9.	 Biochemical character	Os01g0927000	LOC_Os01g70220.1				GO:0046974 - histone methyltransferase activity (H3-K9 specific), GO:0008270 - zinc ion binding, GO:0042393 - histone binding, GO:0005634 - nucleus, GO:0005694 - chromosome		
7485	SRP33B	SRp33b	SR PROTEIN SRP33B	SR protein, homolog of human ASF/SF2	SR PROTEIN SRP33B				 Biochemical character						GO:0000398 - nuclear mRNA splicing, via spliceosome		
7486	TAS3	TAS3	TRANS-ACTING siRNA3	TRANS-ACTING siRNA3					 Other						GO:0016246 - RNA interference		
7487	TDR	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1	TAPETUM DEGENERATION RETARDATION	tapetum degeneration retardation, basic helix loop helix 5, basic/helix-loop-helix 5	BASIC HELIX LOOP HELIX 5	tdr	2	LOC_Os02g02820.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0120500	LOC_Os02g02820.1	GR:0020145			GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0030528 - transcription regulator activity, GO:0045449 - regulation of transcription, GO:0048653 - anther development, GO:0048654 - anther morphogenesis, GO:0009555 - pollen development, GO:0010234 - tapetal cell fate specification, GO:0048657 - tapetal cell differentiation		PO:0009049 - inflorescence 
7490	UGP1	Ugp1, OsUgp1, UGP2, UGP3	UDP-GLUCOSE PYROPHOSPHORYLASE 1	UDP-Glucose Pyrophosphorylase1, UDP-Glucose Pyrophosphorylase 1, UGPase 1, UGPase, UTP:glucose phosphate uridylyltransferase	UDP-GLUCOSE PYROPHOSPHORYLASE 1		9	DQ395328, DQ978224, AB062606. D15437. EU267965. UGP2 and UGP3 in Li et al. 2011. UGPase in Abe et al. 2002.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0553200	LOC_Os09g38030.2, LOC_Os09g38030.1	GR:0061332			GO:0016036 - cellular response to phosphate starvation, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity, GO:0009555 - pollen development, GO:0052543 - callose deposition in cell wall		
7491	UGP2	Ugp2, OsUgp2	UDP-GLUCOSE PYROPHOSPHORYLASE 2	UDP-Glucose Pyrophosphorylase2, UDP-Glucose Pyrophosphorylase 2, UDPGase 2	UDP-GLUCOSE PYROPHOSPHORYLASE 2		2	AF249880.	 Biochemical character	Os02g0117700	LOC_Os02g02560.1				GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity, GO:0016779 - nucleotidyltransferase activity	TO:0000696 - starch content, TO:0000421 - pollen fertility	PO:0009066 - anther , PO:0025395 - floral organ , PO:0025281 - pollen 
7492	WDA1	OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5	WAX-DEFICIENT ANTHER 1	Wax-deficient anther1, Wax-deficient anther 1, WDA1 protein, Glossy1-homologous gene 5	WDA1 PROTEIN	wda1	10	AC026815. AF143746. lipid metabolic enzyme. Similar to Arabidopsis CER1. PO:0009073; stigma ; PO:0009036; lodicule ; PO:0006450; tapetum (sensu Poaceae) ; PO:0020091; male gametophyte ; PO:0006442; anther (sensu Poaceae) ; PO:0000032; tetrad of microspores ; PO:0000022; cuticle ; PO:0006445; anther wall (sensu Poaceae) ; PO:0000282; trichome. GRO:0007224; stamen stage ST5-8.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os10g0471100	LOC_Os10g33250.1, LOC_Os10g33250.3, LOC_Os10g33250.2	GR:0080022			GO:0043668 - exine, GO:0005783 - endoplasmic reticulum, GO:0010025 - wax biosynthetic process, GO:0010143 - cutin biosynthetic process, GO:0048653 - anther development	TO:0000245 - pollen free, TO:0000531 - anther length, TO:0000276 - drought tolerance, TO:0000709 - leaf gloss, TO:0000723 - microsporocyte development trait, TO:0000214 - anther shape, TO:0000187 - anther color	PO:0009036 - lodicule , PO:0000022 - plant cuticle , PO:0000032 - tetrad of microspores , PO:0000282 - trichome , PO:0009066 - anther , PO:0000002 - anther wall , PO:0009071 - anther wall tapetum , PO:0020091 - obsolete microgametophyte , PO:0009073 - stigma 
7495	XB3	Xb3	XA21 BINDING PROTEIN 3	Xa21-binding protein 3, receptor-like kinase Xa21-binding protein 3	XA21 BINDING PROTEIN 3		5	E3 Ubiquitin ligase. AF272860. Q65XV2. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance	Os05g0112000	LOC_Os05g02130.1	GR:0101175			GO:0042742 - defense response to bacterium, GO:0004872 - receptor activity, GO:0004842 - ubiquitin-protein ligase activity, GO:0016301 - kinase activity, GO:0008270 - zinc ion binding, GO:0016567 - protein ubiquitination, GO:0005515 - protein binding, GO:0051865 - protein autoubiquitination	TO:0000175 - bacterial blight disease resistance	PO:0009025 - vascular leaf 
7497	YAB5	OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1	YABBY 5	Protein YABBY 5, TONGARI-BOUSHI1, TONGARI-BOUSHI 1	PROTEIN YABBY 5	tob1	4	BAF15337. Q0JBF0. OsYAB3 in Dai et al. 2007. LOC_Os04g45330 .	 Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os04g0536300	LOC_Os04g45330.1				GO:0030154 - cell differentiation, GO:0010073 - meristem maintenance, GO:0048437 - floral organ development, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0048366 - leaf development, GO:0009908 - flower development	TO:0000655 - leaf development trait, TO:0000622 - flower development trait, TO:0000621 - inflorescence development trait	PO:0001050 - leaf development stage , PO:0025477 - floral organ primordium , PO:0007615 - flower development stage , PO:0000017 - vascular leaf primordium , PO:0001083 - inflorescence development stage , PO:0025487 - bract primordium 
7498	YGL1	OsYGL1, CHLG, Ygl1, CS, OsCHLG	YELLOW-GREEN LEAF 1	chlorina, Chl synthetase, Chlorophyll synthase, yellow green leaf 1	CHLOROPHYLL SYNTHASE	ygl1	5	EF432576. Q5W6H5.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0349700	LOC_Os05g28200.2, LOC_Os05g28200.1				GO:0015994 - chlorophyll metabolic process, GO:0006098 - pentose-phosphate shunt, GO:0006364 - rRNA processing, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009965 - leaf morphogenesis, GO:0010027 - thylakoid membrane organization, GO:0015995 - chlorophyll biosynthetic process, GO:0009534 - chloroplast thylakoid, GO:0009902 - chloroplast relocation, GO:0046408 - chlorophyll synthetase activity, GO:0046686 - response to cadmium ion, GO:0051607 - defense response to virus, GO:0042793 - transcription from plastid promoter, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0016021 - integral to membrane, GO:0016117 - carotenoid biosynthetic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019344 - cysteine biosynthetic process, GO:0030154 - cell differentiation, GO:0031969 - chloroplast membrane	TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance	
7502	MAR5	Osmar5	TC1/MARINER TRANSPOSABLE ELEMENT 5	Tc1/mariner element 5, Mariner 5, mariner-like element 5, Tc1/Mariner-like element 5			6	AP002864: 9230-9480.	 Other						GO:0032196 - transposition		
8000	WAK12	OsWAK12, OsRLCK75, RLCK75	WALL-ASSOCIATED KINASE GENE 12	Receptor-like Cytoplasmic Kinase 75	WALL-ASSOCIATED KINASE 12		2	LOC_Os02g41480.	 Biochemical character	Os02g0623600	LOC_Os02g41480.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8001	WAK13	OsWAK13	WALL-ASSOCIATED KINASE GENE 13		WALL-ASSOCIATED KINASE 13		2		 Biochemical character								
8002	WAK26	OsWAK26	WALL-ASSOCIATED KINASE GENE 26		WALL-ASSOCIATED KINASE 26		3		 Biochemical character								
8003	WAK37	OsWAK37	WALL-ASSOCIATED KINASE GENE 37		WALL-ASSOCIATED KINASE 37		4	CB633483, CB674990.	 Biochemical character	Os04g0365100	LOC_Os04g29580.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8004	WAK39	OsWAK39	WALL-ASSOCIATED KINASE GENE 39		WALL-ASSOCIATED KINASE 39		4		 Biochemical character								
8005	WAK40	OsWAK40	WALL-ASSOCIATED KINASE GENE 40		WALL-ASSOCIATED KINASE 40		4		 Biochemical character								
8006	WAK42	OsWAK42	WALL-ASSOCIATED KINASE GENE 42		WALL-ASSOCIATED KINASE 42		4		 Biochemical character								
8007	WAK50	OsWAK50	WALL-ASSOCIATED KINASE GENE 50		WALL-ASSOCIATED KINASE 50		4		 Biochemical character	Os04g0598900	LOC_Os04g51040.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding		
8008	WAK56	OsWAK56	WALL-ASSOCIATED KINASE GENE 56		WALL-ASSOCIATED KINASE 56		5		 Biochemical character								
8009	WAK57/58	OsWAK57/58, OsWAK57, OsWAK58	WALL-ASSOCIATED KINASE GENE 57/58		WALL-ASSOCIATED KINASE 57/58		5	OsWAK58 was merged with OsWAK57.	 Biochemical character								
8010	WAK59	OsWAK59	WALL-ASSOCIATED KINASE GENE 59		WALL-ASSOCIATED KINASE 59		5	BM421232.	 Biochemical character								
8011	WAK60	OsWAK60	WALL-ASSOCIATED KINASE GENE 60		WALL-ASSOCIATED KINASE 60		5		 Biochemical character								
8012	WAK87	OsWAK87	WALL-ASSOCIATED KINASE GENE 87		WALL-ASSOCIATED KINASE 87		9		 Biochemical character	Os09g0482640	LOC_Os09g30454.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
8013	WAK93	OsWAK93, OsRLCK286, RLCK286	WALL-ASSOCIATED KINASE GENE 93	Receptor-like Cytoplasmic Kinase 286	WALL-ASSOCIATED KINASE 93		10	LOC_Os10g01390.	 Biochemical character	Os10g0103140	LOC_Os10g01390.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8014	WAK94	OsWAK94	WALL-ASSOCIATED KINASE GENE 94		WALL-ASSOCIATED KINASE 94		10	OSJNBa0096E22.11	 Biochemical character						GO:0030247 - polysaccharide binding, GO:0016301 - kinase activity		
8015	WAK95	OsWAK95	WALL-ASSOCIATED KINASE GENE 95		WALL-ASSOCIATED KINASE 95		10		 Biochemical character	Os10g0111400	LOC_Os10g02250.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding		
8016	WAK96/97	OsWAK96/97, OsWAK96, OsWAK97	WALL-ASSOCIATED KINASE GENE 96/97		WALL-ASSOCIATED KINASE 96/97		10	OsWAK96 was merged with OsWAK97.	 Biochemical character	Os10g0111900	LOC_Os10g02284.1, LOC_Os10g02276.1				GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
8017	WAK98	OsWAK98, OsRLCK287, RLCK287	WALL-ASSOCIATED KINASE GENE 98	Receptor-like Cytoplasmic Kinase 287	WALL-ASSOCIATED KINASE 98		10	BQ908901. LOC_Os10g02360.	 Biochemical character,  Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os10g0112700	LOC_Os10g02360.1				GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development	TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
8018	WAK99	OsWAK99	WALL-ASSOCIATED KINASE GENE 99		WALL-ASSOCIATED KINASE 99		10		 Biochemical character						GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8019	WAK100	OsWAK100, OsRLCK291, RLCK291	WALL-ASSOCIATED KINASE GENE 100	Receptor-like Cytoplasmic Kinase 291	WALL-ASSOCIATED KINASE 100		10	LOC_Os10g05170.	 Biochemical character	Os10g0141300	LOC_Os10g05170.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
8020	WAK101	OsWAK101, OsRLCK292, RLCK292	WALL-ASSOCIATED KINASE GENE 101	Receptor-like Cytoplasmic Kinase 292	WALL-ASSOCIATED KINASE 101		10	BQ908738. LOC_Os10g05250.	 Biochemical character	Os10g0142600 	LOC_Os10g05250.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8021	WAK102	OsWAK102, OsRLCK293, RLCK293	WALL-ASSOCIATED KINASE GENE 102	Receptor-like Cytoplasmic Kinase 293	WALL-ASSOCIATED KINASE 102		10	LOC_Os10g05400.	 Biochemical character	Os10g0143866	LOC_Os10g05400.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8022	WAK103	OsWAK103	WALL-ASSOCIATED KINASE GENE 103		WALL-ASSOCIATED KINASE 103		10		 Biochemical character	Os10g0151100	LOC_Os10g06030.1				GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8023	WAK104	OsWAK104	WALL-ASSOCIATED KINASE GENE 104		WALL-ASSOCIATED KINASE 104		10		 Biochemical character	Os10g0151500 	LOC_Os10g06090.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
8024	WAK106	OsWAK106	WALL-ASSOCIATED KINASE GENE 106		WALL-ASSOCIATED KINASE 106		10	OSJNBa0011A24.19	 Biochemical character						GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
8025	WAK107	OsWAK107	WALL-ASSOCIATED KINASE GENE 107		WALL-ASSOCIATED KINASE 107		10		 Biochemical character	Os10g0174548	LOC_Os10g09570.1, LOC_Os10g09550.1				GO:0016301 - kinase activity, GO:0030247 - polysaccharide binding		
8026	WAK108	OsWAK108	WALL-ASSOCIATED KINASE GENE 108		WALL-ASSOCIATED KINASE 108		10		 Biochemical character	Os10g0174800 	LOC_Os10g09620.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0016301 - kinase activity, GO:0030247 - polysaccharide binding		
8027	WAK109/110	OsWAK109/110, OsWAK109, OsWAK110	WALL-ASSOCIATED KINASE GENE 109/110		WALL-ASSOCIATED KINASE 109/110		10	OsWAK109 was merged with OsWAK110.	 Biochemical character	Os10g0175600	LOC_Os10g09690.1				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
8028	WAK111	OsWAK111	WALL-ASSOCIATED KINASE GENE 111		WALL-ASSOCIATED KINASE 111		10		 Biochemical character	Os10g0178800	LOC_Os10g10030.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
8029	WAK112	OsWAK112, OsWAK112d	WALL-ASSOCIATED KINASE GENE 112	cell wall associated receptor kinase 112, cell wall associated receptor kinase 112d	WALL-ASSOCIATED KINASE 112		10	BI118649, CA759266.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0180800	LOC_Os10g10130.5, LOC_Os10g10130.4, LOC_Os10g10130.3, LOC_Os10g10130.2, LOC_Os10g10130.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding		
8030	WAK113	OsWAK113	WALL-ASSOCIATED KINASE GENE 113		WALL-ASSOCIATED KINASE 113		10		 Biochemical character	Os10g0326100	LOC_Os10g17890.1				GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
8031	WAK114	OsWAK114	WALL-ASSOCIATED KINASE GENE 114		WALL-ASSOCIATED KINASE 114		10		 Biochemical character	Os10g0326200	LOC_Os10g17910.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8032	WAK115	OsWAK115	WALL-ASSOCIATED KINASE GENE 115		WALL-ASSOCIATED KINASE 115		10		 Biochemical character								
8033	WAK116	OsWAK116	WALL-ASSOCIATED KINASE GENE 116		WALL-ASSOCIATED KINASE 116		11		 Biochemical character								
8034	WAK117	OsWAK117	WALL-ASSOCIATED KINASE GENE 117		WALL-ASSOCIATED KINASE 117		11		 Biochemical character	Os11g0555600	LOC_Os11g35220.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8035	WAK118	OsWAK118	WALL-ASSOCIATED KINASE GENE 118		WALL-ASSOCIATED KINASE 118		11		 Biochemical character								
8036	WAK119	OsWAK119	WALL-ASSOCIATED KINASE GENE 119		WALL-ASSOCIATED KINASE 119		11		 Biochemical character								
8037	WAK120	OsWAK120	WALL-ASSOCIATED KINASE GENE 120		WALL-ASSOCIATED KINASE 120		11	CB680735.	 Biochemical character	Os11g0565300 	LOC_Os11g35860.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding		
8038	WAK121	OsWAK121	WALL-ASSOCIATED KINASE GENE 121		WALL-ASSOCIATED KINASE 121		11		 Biochemical character								
8039	WAK124	OsWAK124	WALL-ASSOCIATED KINASE GENE 124		WALL-ASSOCIATED KINASE 124		12		 Biochemical character	Os12g0266200	LOC_Os12g16540.1				GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0016301 - kinase activity		
8040	WAK125	OsWAK125	WALL-ASSOCIATED KINASE GENE 125		WALL-ASSOCIATED KINASE 125		12		 Biochemical character								
8041	WAK126	OsWAK126	WALL-ASSOCIATED KINASE GENE 126		WALL-ASSOCIATED KINASE 126		12		 Biochemical character								
8042	WAK127	OsWAK127	WALL-ASSOCIATED KINASE GENE 127		WALL-ASSOCIATED KINASE 127		12		 Biochemical character								
8043	WAK128	OsWAK128	WALL-ASSOCIATED KINASE GENE 128	Wall-associated kinase gene 128	WALL-ASSOCIATED KINASE 128		12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0615100	LOC_Os12g42060.3, LOC_Os12g42060.2, LOC_Os12g42060.1				GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance	
8044	WAK129	OsWAK129, OsRLCK375, RLCK375	WALL-ASSOCIATED KINASE GENE 129	Receptor-like Cytoplasmic Kinase 375	WALL-ASSOCIATED KINASE 129		12	LOC_Os12g42070.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0615300	LOC_Os12g42070.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
8050	RIRE1	RIRE1, Osr11, Rire1	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon, LTR retrotransposon Osr11			1	AP003853: 96975-98088. TY1/Copia type LTR-retrotransposon. 	 Other						GO:0032196 - transposition		
8051	RIRE9	RIRE9, Osr27, Rire9	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon, LTR retrotransposon Osr27			6	AP000399: 75139-88038.	 Other						GO:0032196 - transposition		
8052	RIRE10	RIRE10	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
8053	AMY1A	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A	ALPHA-AMYLASE 1A	Alpha-amylase1A, Alpha-amylase-1A, Alpha-amylase isozyme 1B, Amylase-1	ALPHA-AMYLASE 1A		2	EC=3.2.1.1 Alpha-amylase, 1,4-alpha-D-glucan glucanohydrolase. Os02g0765600. M24286. AK101744. P17654.  Innate immunity	 Biochemical character	Os02g0765600	LOC_Os02g52710.1	GR:0060043			GO:0005987 - sucrose catabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0004556 - alpha-amylase activity, GO:0005509 - calcium ion binding, GO:0005983 - starch catabolic process		
8054	AMY1C	Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C	ALPHA-AMYLASE 1C	Alpha-amylase1C, Alpha-amylase 1C, Amylase-3, Alpha-amylase-1A	ALPHA-AMYLASE 1C		2	EU267975.	 Biochemical character			GR:0061333			GO:0004556 - alpha-amylase activity		
8055	CDPK1	OsCDPK1, OsCPK1	CALCIUM-DEPENDENT PROTEIN KINASE 1	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 1		1	AP002819. LOC_Os01g43410.	 Biochemical character	Os01g0622600	LOC_Os01g43410.1				GO:0005524 - ATP binding, GO:0009733 - response to auxin stimulus, GO:0010857 - calcium-dependent protein kinase activity, GO:0004672 - protein kinase activity	TO:0000163 - auxin sensitivity	
8056	CDPK2	OsCDPK2, OsCPK2	CALCIUM-DEPENDENT PROTEIN KINASE 2	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 2		1	AP003073, AP003260. LOC_Os01g59360.	 Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0808400	LOC_Os01g59360.1				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0080092 - regulation of pollen tube growth, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0010857 - calcium-dependent protein kinase activity		PO:0009049 - inflorescence , PO:0009029 - stamen 
8057	CDPK3	OsCDPK3, OsCPK3	CALCIUM-DEPENDENT PROTEIN KINASE 3	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 3		1	AP004366. AK058494. LOC_Os01g61590.	 Biochemical character	Os01g0832300	LOC_Os01g61590.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
8058	CDPK4	OsCDPK4, OsCPK4, CPK4, CDPK1	CALCIUM-DEPENDENT PROTEIN KINASE 4	calcium-dependent protein kinase 4, Ca2 +-dependent protein kinase 4	CALCIUM-DEPENDENT PROTEIN KINASE 4	oscpk4, oscpk4-1, oscpk4-2	2	LOC_Os02g03410. AP005311, AF194413. AtCPK28 ortholog. GO:1903427: negative regulation of reactive oxygen species biosynthetic process. GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0126400	LOC_Os02g03410.2, LOC_Os02g03410.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0005509 - calcium ion binding, GO:0031348 - negative regulation of defense response, GO:0005886 - plasma membrane, GO:0002238 - response to molecule of fungal origin, GO:0010857 - calcium-dependent protein kinase activity, GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
8059	CDPK5	OsCDPK5, OsCPK5	CALCIUM-DEPENDENT PROTEIN KINASE 5	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 5		2	AP004071. LOC_Os02g46090. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Vegetative organ - Root	Os02g0685900	LOC_Os02g46090.1				GO:0009735 - response to cytokinin stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0010618 - aerenchyma formation, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	PO:0000258 - root cortex 
8060	CDPK6	OsCDPK6, OsCPK6	CALCIUM-DEPENDENT PROTEIN KINASE 6	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 6		2	AP004082. LOC_Os02g58520.	 Biochemical character	Os02g0832000	LOC_Os02g58520.1				GO:0010359 - regulation of anion channel activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009738 - abscisic acid mediated signaling, GO:0005829 - cytosol, GO:0010119 - regulation of stomatal movement, GO:0010857 - calcium-dependent protein kinase activity		PO:0007633 - endosperm development stage 
8061	CDPK8	OsCDPK8, OsCPK8	CALCIUM-DEPENDENT PROTEIN KINASE 8	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 8		3	AC135595, AC145384. a calcium signaling component. LOC_Os03g59390.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0808600	LOC_Os03g59390.1				GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0010857 - calcium-dependent protein kinase activity, GO:0005509 - calcium ion binding, GO:0004698 - calcium-dependent protein kinase C activity, GO:0009738 - abscisic acid mediated signaling, GO:0005886 - plasma membrane, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
8062	CDPK9	OsCDPK9, OsCPK9, CPK9	CALCIUM-DEPENDENT PROTEIN KINASE 9	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 9		3	AC097277. LOC_Os03g48270.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os03g0688300	LOC_Os03g48270.1				GO:0009737 - response to abscisic acid stimulus, GO:0010857 - calcium-dependent protein kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0002237 - response to molecule of bacterial origin, GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation	TO:0000180 - spikelet fertility, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
8063	CDPK10	OsCDPK10, OsCPK10, CPK10	CALCIUM-DEPENDENT PROTEIN KINASE 10	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 10		3	AC084296. LOC_Os03g57450. GO:1901033: positive regulation of response to reactive oxygen species. GO:0061691: detoxification of hydrogen peroxide.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0788500	LOC_Os03g57450.1				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0010857 - calcium-dependent protein kinase activity, GO:0046466 - membrane lipid catabolic process, GO:0042542 - response to hydrogen peroxide, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0009414 - response to water deprivation, GO:0009735 - response to cytokinin stimulus, GO:0050832 - defense response to fungus, GO:0000302 - response to reactive oxygen species	TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance	
8064	CDPK12	OsCDPK12, OsCPK12, CPK12	CALCIUM-DEPENDENT PROTEIN KINASE 12	calcium-dependent protein kinase, Calcium-dependent protein kinase 12	CALCIUM-DEPENDENT PROTEIN KINASE 12	oscpk12	4	AL606687. LOC_Os04g47300.	 Biochemical character,  Tolerance and resistance	Os04g0560600	LOC_Os04g47300.1				GO:0009627 - systemic acquired resistance, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009697 - salicylic acid biosynthetic process, GO:0005737 - cytoplasm		PO:0007633 - endosperm development stage 
8065	CDPK14	OsCDPK14, OsCPK14	CALCIUM-DEPENDENT PROTEIN KINASE 14	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 14		5	AC129718. LOC_Os05g41270.	 Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0491900	LOC_Os05g41270.1				GO:0010857 - calcium-dependent protein kinase activity		PO:0009049 - inflorescence , PO:0009029 - stamen 
8066	CDPK15	OsCDPK15, OsCPK15	CALCIUM-DEPENDENT PROTEIN KINASE 15	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 15		5	AC098836, AC137608. LOC_Os05g50810.	 Biochemical character	Os05g0585500	LOC_Os05g50810.2, LOC_Os05g50810.1				GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding, GO:0010857 - calcium-dependent protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0010119 - regulation of stomatal movement, GO:0010359 - regulation of anion channel activity, GO:0005524 - ATP binding, GO:0009738 - abscisic acid mediated signaling		
8067	CDPK16	OsCDPK16, OsCPK16	CALCIUM-DEPENDENT PROTEIN KINASE 16	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 16		5	AC108503, AC121361. LOC_Os05g39090.	 Biochemical character	Os05g0467000	LOC_Os05g39090.1				GO:0005886 - plasma membrane, GO:0010857 - calcium-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		
8068	CDPK17	OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5	CALCIUM-DEPENDENT PROTEIN KINASE 17	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 17	oscpk17	7	AP003847. LOC_Os07g06740.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0161600	LOC_Os07g06740.3, LOC_Os07g06740.2, LOC_Os07g06740.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010857 - calcium-dependent protein kinase activity, GO:0009733 - response to auxin stimulus, GO:0006109 - regulation of carbohydrate metabolic process, GO:0009409 - response to cold, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding	TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance	
8069	CDPK18	OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18	CALCIUM-DEPENDENT PROTEIN KINASE 18	calcium-dependent protein kinase 18	CALCIUM-DEPENDENT PROTEIN KINASE 18		7	AF194414, AP005325, AP004305. LOC_Os07g22710.	 Biochemical character	Os07g0409900	LOC_Os07g22710.4, LOC_Os07g22710.3, LOC_Os07g22710.2, LOC_Os07g22710.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0010857 - calcium-dependent protein kinase activity		
8070	CDPK19	OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2	CALCIUM-DEPENDENT PROTEIN KINASE 19	calcium-dependent protein kinase, calcium-dependent protein kinase 2	CALCIUM-DEPENDENT PROTEIN KINASE 19		7	P53683. AP005325, AP004305, X81394.Y13658 (promoter and 5'UTR). LOC_Os07g33110.	 Biochemical character,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance	Os07g0515100	LOC_Os07g33110.5, LOC_Os07g33110.4, LOC_Os07g33110.3, LOC_Os07g33110.2, LOC_Os07g33110.1				GO:0009733 - response to auxin stimulus, GO:0010857 - calcium-dependent protein kinase activity, GO:0005509 - calcium ion binding, GO:0009739 - response to gibberellin stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0051607 - defense response to virus, GO:0005886 - plasma membrane, GO:0005524 - ATP binding	TO:0000166 - gibberellic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000163 - auxin sensitivity	
8071	CDPK20	OsCDPK20, OsCPK20	CALCIUM-DEPENDENT PROTEIN KINASE 20	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 20		7	AP003866. LOC_Os07g38120.	 Biochemical character	Os07g0568600	LOC_Os07g38120.1				GO:0005509 - calcium ion binding, GO:0004698 - calcium-dependent protein kinase C activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0010857 - calcium-dependent protein kinase activity, GO:0009738 - abscisic acid mediated signaling		
8072	CDPK21	OsCDPK21, OsCPK21	CALCIUM-DEPENDENT PROTEIN KINASE 21	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 21		8	AP003948. LOC_Os08g42750.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0540400	LOC_Os08g42750.1				GO:0010857 - calcium-dependent protein kinase activity, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0004506 - developing seed stage 
8073	CDPK22	OsCDPK22, OsCPK22	CALCIUM-DEPENDENT PROTEIN KINASE 22	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 22		9	AC108755, AP004138, AC108760. LOC_Os09g33910.	 Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0514200	LOC_Os09g33910.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010857 - calcium-dependent protein kinase activity		PO:0009049 - inflorescence , PO:0009029 - stamen 
8075	CDPK24	OsCDPK24, OsCPK24, OsCDPK14	CALCIUM-DEPENDENT PROTEIN KINASE 24	calcium-dependent protein kinase, calcium-dependent protein kinase 14	CALCIUM-DEPENDENT PROTEIN KINASE 24		11	LOC_Os11g07040. AC128643. AY144497. OsCDPK14 in Zhang et al. 2005 and Wang et al. 2016. a calcium/calmodulin-dependent protein kinase. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0171500	LOC_Os11g07040.1				GO:0005509 - calcium ion binding, GO:0005829 - cytosol, GO:0009411 - response to UV, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009739 - response to gibberellin stimulus, GO:0010857 - calcium-dependent protein kinase activity, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0009789 - positive regulation of abscisic acid mediated signaling	TO:0006002 - proline content, TO:0000166 - gibberellic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem 
8076	CDPK25	OsCDPK25, OsCPK25	CALCIUM-DEPENDENT PROTEIN KINASE 25	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 25		11	AC123528. AF319480. LOC_Os11g04170.	 Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0136600	LOC_Os11g04170.1				GO:0080092 - regulation of pollen tube growth, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0004674 - protein serine/threonine kinase activity, GO:0010857 - calcium-dependent protein kinase activity		PO:0009049 - inflorescence , PO:0009029 - stamen 
8077	CDPK26	OsCDPK26, OsCPK26	CALCIUM-DEPENDENT PROTEIN KINASE 26	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 26		12	BX000508. LOC_Os12g03970.	 Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0133500	LOC_Os12g03970.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010857 - calcium-dependent protein kinase activity		PO:0009049 - inflorescence , PO:0009029 - stamen 
8078	CDPK27	OsCDPK27, OsCPK27	CALCIUM-DEPENDENT PROTEIN KINASE 27	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 27		12	AL845343. LOC_Os12g30150.	 Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0486600	LOC_Os12g30150.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009049 - inflorescence , PO:0009029 - stamen 
8079	CDPK28	OsCDPK28, OsCPK28	CALCIUM-DEPENDENT PROTEIN KINASE 28	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 28		12	AL954825. LOC_Os12g07230.	 Biochemical character	Os12g0169800	LOC_Os12g07230.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
8080	CDPK29	OsCDPK29, OsCPK29	CALCIUM-DEPENDENT PROTEIN KINASE 29	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 29		12	BX842241. LOC_Os12g12860.	 Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0230200	LOC_Os12g12860.1				GO:0005509 - calcium ion binding, GO:0010857 - calcium-dependent protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		PO:0009049 - inflorescence , PO:0009029 - stamen 
8081	CDPK30	OsCDPK30, OsCPK30	CALCIUM-DEPENDENT PROTEIN KINASE 30	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 30		7	LOC_Os07g44710.	 Biochemical character	Os07g0641200	LOC_Os07g44710.1				GO:0005509 - calcium ion binding, GO:0009739 - response to gibberellin stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009733 - response to auxin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	
8082	CDPK31	OsCDPK31, OsCPK31	CALCIUM-DEPENDENT PROTEIN KINASE 31	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 31			AK110341. GO:2000034: regulation of seed maturation.	 Biochemical character,  Seed,  Seed - Morphological traits - Endosperm						GO:0010857 - calcium-dependent protein kinase activity, GO:0043036 - starch grain, GO:0010431 - seed maturation	TO:0002661 - seed maturation	PO:0009001 - fruit , PO:0007633 - endosperm development stage 
8085	EHD2/RID1	Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2	EARLY HEADING DATE 2	early heading date 2, Indeterminate 1, Indeterminate, Rice Indeterminate 1		ehd2, rid1	10	rice ortholog of the maize ID1gene, Rice homologue of maize INDETERMINATE 1. AB359195(Tohoku IL9 genomic DNA), AB359196(Tohoku IL9 mRNA), AB359197(R0364 genomic DNA), AB359198(R0364 mRNA), FJ009578(Zhonghua 11 mRNA), FJ009579(Zhonghua 11 genomic DNA).	 Reproductive organ - Heading date	Os10g0419200	LOC_Os10g28330.1				GO:0008270 - zinc ion binding, GO:0009648 - photoperiodism, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	
8086	PSY1	PSY1, OsPSY1	PHYTOENE SYNTHASE 1	phytoene synthase 1, PSY1-like gene	PHYTOENE SYNTHASE 1		6	AY445521, AY024350, AP005750, AU082986. AJ715786. FJ971173-FJ971176.	 Biochemical character,  Coloration	Os06g0729000	LOC_Os06g51290.4, LOC_Os06g51290.3, LOC_Os06g51290.2, LOC_Os06g51290.1				GO:0016767 - geranylgeranyl-diphosphate geranylgeranyltransferase activity, GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups, GO:0016117 - carotenoid biosynthetic process, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0046905 - phytoene synthase activity		
8087	PSY2	PSY2, OsPSY2	PHYTOENE SYNTHASE 2	phytoene synthase 2	PHYTOENE SYNTHASE 2		12	AY452768, AY024351, AL831803. LOC_Os12g43130.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0626400	LOC_Os12g43130.1				GO:0010287 - plastoglobule, GO:0046905 - phytoene synthase activity, GO:0016117 - carotenoid biosynthetic process, GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups, GO:0009408 - response to heat, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0009058 - biosynthetic process	TO:0000432 - temperature response trait	
8088	PSY3	PSY3	PHYTOENE SYNTHASE 3		PHYTOENE SYNTHASE 3		3		 Biochemical character						GO:0046905 - phytoene synthase activity		
8089	AATP6	A-atp6	A-ATPASE SUBUNIT 6	ATPase subunit 6	A-ATPASE SUBUNIT 6		Mt		 Biochemical character						GO:0016887 - ATPase activity		
8090	AMY3C	Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C	ALPHA-AMYLASE 3C	Alpha-amylase3C, Alpha-amylase isozyme 3C precursor, Alpha-amylase isozyme 3C, Amylase-7, Alpha-amylase-3A	ALPHA-AMYLASE 3C		9	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. P27939. X56338.	 Biochemical character	Os09g0457800	LOC_Os09g28420.1	GR:0061335			GO:0005987 - sucrose catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0004556 - alpha-amylase activity, GO:0009739 - response to gibberellin stimulus, GO:0005509 - calcium ion binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005983 - starch catabolic process	TO:0000166 - gibberellic acid sensitivity	
8093	CAB2R	cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a	CHLOROPHYLL A/B BINDING PROTEIN 2R	"\"Chlorophyll a-b binding protein 2, chloroplastic\", LHCII type I CAB-2, light harvesting chlorophyll a/b binding protein 2"	CHLOROPHYLL A/B BINDING PROTEIN 2R		1	LHCP. P12331. X13909. Lhcb1a in Yamatani et al. 2018.	 Vegetative organ - Leaf	Os01g0600900	LOC_Os01g41710.1				GO:0016168 - chlorophyll binding, GO:0018298 - protein-chromophore linkage, GO:0009765 - photosynthesis, light harvesting, GO:0009536 - plastid, GO:0009523 - photosystem II, GO:0009507 - chloroplast, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009658 - chloroplast organization, GO:0000287 - magnesium ion binding, GO:0009522 - photosystem I, GO:0009535 - chloroplast thylakoid membrane	TO:0002715 - chloroplast development trait	
8094	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1	CATALASE A	CATALASE A, Catalase-2*, Catalase-Al (cDNA clone), Catalase isozyme A	CATALASE A		2	LOC_Os02g02400. cDNA clone. (Kishimoto et al. 1994b) D29966. EC=1.11.1.6 P0C549(indica), Q0E4K1(japonica). AB004768-AB004775 (Oryza longistaminata catA). AB014441-AB014453 (Oryza sativa and other wild rice species). X61626. EF069505-EF069572 (Oryza sativa and wild rice species). ROS-scavenging enzyme. EF371902. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0115700	LOC_Os02g02400.3, LOC_Os02g02400.2, LOC_Os02g02400.1	GR:0060109			GO:0006801 - superoxide metabolic process, GO:0005829 - cytosol, GO:0005777 - peroxisome, GO:0009651 - response to salt stress, GO:0009514 - glyoxysome, GO:0020037 - heme binding, GO:0010332 - response to gamma radiation, GO:0006979 - response to oxidative stress, GO:0004096 - catalase activity, GO:0042744 - hydrogen peroxide catabolic process, GO:0055114 - oxidation reduction, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	PO:0009047 - stem , PO:0009066 - anther , PO:0009010 - seed , PO:0025034 - leaf 
8095	ACR2.1	CDC25.1, OsACR2.1, OsStr20, STR20	ARSENATE REDUCTASE 1	Sulfurtransferase 20	ARSENATE REDUCTASE 1		10	Q336V5. AY860059. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0545700	LOC_Os10g39860.2, LOC_Os10g39860.1				GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0046685 - response to arsenic, GO:0004725 - protein tyrosine phosphatase activity, GO:0016791 - phosphatase activity, GO:0006468 - protein amino acid phosphorylation, GO:0008794 - arsenate reductase (glutaredoxin) activity, GO:0009507 - chloroplast		
8096	ACR2.2	CDC25.2, OsACR2.2, OsStr21, STR21	ARSENATE REDUCTASE 2	Sulfurtransferase 21	ARSENATE REDUCTASE 2		3	Q10SX6. AY860058.	 Biochemical character	Os03g0108000	LOC_Os03g01770.1				GO:0004725 - protein tyrosine phosphatase activity, GO:0046685 - response to arsenic, GO:0009507 - chloroplast, GO:0016791 - phosphatase activity, GO:0008794 - arsenate reductase (glutaredoxin) activity, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0006468 - protein amino acid phosphorylation		
8101	HD9	Hd9, qHd9	HEADING DATE 9	heading date  (QTL)-9			3		 Reproductive organ,  Reproductive organ - Heading date						GO:0009648 - photoperiodism		
8102	MUTM2	MutM2, Fpg	MUTM PROTEIN 2	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	MUTM PROTEIN 2		8		 Biochemical character						GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity		
8103	SSIIB	OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b	SOLUBLE STARCH SYNTHASE IIB	"Starch synthase-IIb, starch synthase IIb, \"Soluble starch synthase 2-2, chloroplastic/amyloplastic\", Soluble starch synthase II-2, Starch synthase isoform zSTSII-2"	SOLUBLE STARCH SYNTHASE IIB		2	EC=2.4.1.21 Q6Z2T8. AF395537, AJ308110. PO:0009010; seed.	 Seed - Physiological traits - Storage substances	Os02g0744700	LOC_Os02g51070.1	GR:0061113			GO:0009011 - starch synthase activity, GO:0009501 - amyloplast, GO:0019252 - starch biosynthetic process, GO:0009507 - chloroplast	TO:0000488 - seed composition based quality trait	PO:0009010 - seed 
8104	SSIIC	OsSSIIc, SSII-1, SSII1	SOLUBLE STARCH SYNTHASE IIC	"\"Soluble starch synthase 2-1, chloroplastic/amyloplastic\", Soluble starch synthase II-1"	SOLUBLE STARCH SYNTHASE IIC		10	LOC_Os10g30156. EC=2.4.1.21 Q7XE48. AF383878. GU727155-GU727212 (wild rice species). FJ811330-FJ811370 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901744-DQ901773 (wild rice species). EF069782-EF069842 (O. sativa and wild rice species).	 Seed - Physiological traits - Storage substances	Os10g0437600	LOC_Os10g30156.1				GO:0009507 - chloroplast, GO:0009011 - starch synthase activity, GO:0019252 - starch biosynthetic process, GO:0009501 - amyloplast		
8105	SSIIIB	OsSSIIIb. SSIII-1	SOLUBLE STARCH SYNTHASE IIIB		SOLUBLE STARCH SYNTHASE IIIB		4	LOC_Os04g53310. AF432915. GO:2001070:starch binding.	 Seed - Physiological traits - Storage substances	Os04g0624600	LOC_Os04g53310.1	GR:0061114			GO:0009011 - starch synthase activity, GO:0019252 - starch biosynthetic process, GO:0009501 - amyloplast, GO:0009507 - chloroplast		
8106	SSIVA	OsSSIVa, SSIV-1	SOLUBLE STARCH SYNTHASE IVA	SOLUBLE STARCH SYNTHASE IV-1	SOLUBLE STARCH SYNTHASE IVA		1	LOC_Os01g52250. AY373257. AY100470.	 Seed - Physiological traits - Storage substances	Os01g0720600 	LOC_Os01g52250.6, LOC_Os01g52250.5, LOC_Os01g52250.4, LOC_Os01g52250.3, LOC_Os01g52250.2, LOC_Os01g52250.1				GO:0009250 - glucan biosynthetic process, GO:0009507 - chloroplast, GO:0009501 - amyloplast, GO:0019252 - starch biosynthetic process, GO:0009011 - starch synthase activity		
8107	SSIVB	OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2	SOLUBLE STARCH SYNTHASE IVB	SOLUBLE STARCH SYNTHASE IV-2	SOLUBLE STARCH SYNTHASE IVB		5	AY373258, AY100471. AY224560.	 Seed - Physiological traits - Storage substances	Os05g0533600	LOC_Os05g45720.4, LOC_Os05g45720.3, LOC_Os05g45720.2, LOC_Os05g45720.1				GO:0009501 - amyloplast, GO:0019252 - starch biosynthetic process, GO:0009507 - chloroplast, GO:0005978 - glycogen biosynthetic process, GO:0009011 - starch synthase activity		
8109	CATC	OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3	CATALASE C	catalase C, catalase isozyme C, nitric oxide excess1	CATALASE C	noe1, noe1-2	3	LOC_Os03g03910. AY339372. D86611.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0131200	LOC_Os03g03910.1				GO:0006801 - superoxide metabolic process, GO:0009651 - response to salt stress, GO:0005739 - mitochondrion, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004096 - catalase activity, GO:0042742 - defense response to bacterium	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0020104 - leaf sheath 
8110	EIF4G		EUKARYOTIC INITIATION FACTOR 4G		EUKARYOTIC INITIATION FACTOR 4G				 Biochemical character						GO:0006413 - translational initiation		
8111	SBE4	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa	STARCH BRANCHING ENZYME 4	Q-enzyme IIb, starch branching enzyme IIb, Starch branching enzyme IIa	STARCH BRANCHING ENZYME 4	osbe2a	4	LOC_Os04g33460. AB023498, E14723. KJ008712. The sugary-h (sug-h) mutant phenotype was controlled by a complementary interaction of two recessive genes, Isoamylase1 (OsISA1) and Starch branching enzyme IIa (OsBEIIa) (Lee et al. 2017). TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances	Os04g0409200	LOC_Os04g33460.1				GO:0009568 - amyloplast starch grain, GO:0009501 - amyloplast, GO:0003844 - 1,4-alpha-glucan branching enzyme activity, GO:0019252 - starch biosynthetic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005976 - polysaccharide metabolic process, GO:0005982 - starch metabolic process	TO:0000734 - grain length, TO:0000097 - amylopectin content, TO:0000489 - carbohydrate composition related trait, TO:0000099 - sugary endosperm, TO:0000162 - seed quality, TO:0000399 - grain thickness	
8113	qBPH11	Qbph11	brown planthopper resistance (QTL) 11	brown planthopper resistance QTL			11	This QTL found in indica variety DV85 controls the resistance to brown planthopper biotype 2, being located on chromosome 11 between markers X202 and C1172.	 Tolerance and resistance - Insect resistance								
8114	HWG2	hwg2(t)	HYBRID WEAKNESS G2	hybrid weakness g2			11		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen		
8115	XA28	xa28	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 28	Xanthomonas oryzae pv. oryzae resistance 28					 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8116	XA29	Xa29	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 29	Xanthomonas oryzae pv. oryzae resistance 29					 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8117	XA30	Xa30(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 30	Xanthomonas oryzae pv. oryzae resistance 30			11	Xa30(t) was mapped on the long arm of chromosome 11. Linkage analysis revealed that RM1341, V88, C189 and 03STS located on the same side of Xa30(t), with genetic distances of 11.4 cM, 11.4 cM, 4.4 cM and 2.0 cM respectively.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8118	XA31	Xa31	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 31	Xanthomonas oryzae pv. oryzae resistance 31			4	Five BB R-genes, Xa1, Xa2, Xa12, Xa14 and Xa31(t) are mapped on rice chromosome 4, of which Xa1, Xa2 and Xa31(t) have been localized within the same region between G235 and C600. (Wang et al. 2009)	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8119	XA32	Xa32	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 32	Xanthomonas oryzae pv. oryzae resistance 32			11		 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8120	XA22	Xa22, Xa22*, RXa20, Xa(t), Xa22(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 22	Xanthomonas oryzae pv. oryzae resistance 22, Xanthomonas campestris pv. oryzae resistance-22, Xanthomonas oryzae pv. oryzae resistance-22			11	The new gene Xa22(t) is mapped at a distance >7.0 cM from R543 near the telomeric region of chromosome 11 (Lin et al. 1996). The Xa22(t) locus was mapped to a 100kb interval delimited by the R1506 and a subclone from the M3H8 BAC clone (Wang et al. 2003).	 Tolerance and resistance - Disease resistance			GR:0061030			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
8121	ADART	aDart	AUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON	autonomous DNA-based active rice transposon					 Other						GO:0032196 - transposition		
8122	ALT9	Alt-9, qPRE-9	ALUMINIUM TOLERANCE 9	alminium tolerance 9		Alt-9	9		 Tolerance and resistance - Stress tolerance						GO:0010038 - response to metal ion		
8123	CRL4	CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP	CHASE DOMAIN RECEPTOR-LIKE SERINE/THREONINE KINASE	CHASE domain receptor-like serine/threonine kinase, CHASE domain protein	CHASE DOMAIN RECEPTOR-LIKE SERINE/THREONINE KINASE		12	AB246779. cytokinin receptor. LOC_Os12g26940.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0454800	LOC_Os12g26940.1				GO:0004872 - receptor activity, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
8124	CHT10	Cht10	CHITINASE 10	Chitinase10, Chitinase 10, Pathogenesis related (PR)-3 chitinase 10, Pathogenesis related-3 chitinase 10, PR-3 chitinase 10	CHITINASE 10		1	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q5NB11.	 Biochemical character	Os01g0287600	LOC_Os01g18400.1				GO:0006032 - chitin catabolic process, GO:0004568 - chitinase activity, GO:0016998 - cell wall macromolecule catabolic process		
8125	CHT11	Cht11	CHITINASE 11	Chitinase11, Chitinase 11, Pathogenesis related (PR)-3 chitinase 11, Pathogenesis related-3 chitinase 11, PR-3 chitinase 11	CHITINASE 11		3	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q10S66.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0132900	LOC_Os03g04060.1				GO:0004568 - chitinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process		
8127	CHT5	Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3	CHITINASE 5	Chitinase5, Chitinase 5, Pathogenesis related (PR)-3 chitinase 5, Pathogenesis related-3 chitinase 5, PR-3 chitinase 5, Class IV chitinase a, Chitinase IVa, Endochitinase A	CHITINASE 5		4	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q7Y1Z0. EU850802 (Oryza grandiglumis PR-3 (OgChitIVa)). BAC76691. Endochitinase A in Sudo et al. 2008. LOC_Os04g41680. CHIT3 in Liu et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0494100	LOC_Os04g41680.1	GR:0060137			GO:0008061 - chitin binding, GO:0046688 - response to copper ion, GO:0006032 - chitin catabolic process, GO:0004568 - chitinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0006952 - defense response	TO:0000021 - copper sensitivity	
8128	CHT6	Cht6	CHITINASE 6	Chitinase6, Chitinase 6, Pathogenesis related (PR)-3 chitinase 6, Chitinase-6	CHITINASE 6		2	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q6K8R2.	 Biochemical character	Os02g0605900	LOC_Os02g39330.1				GO:0016998 - cell wall macromolecule catabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008061 - chitin binding, GO:0004568 - chitinase activity, GO:0006952 - defense response, GO:0006032 - chitin catabolic process		
8130	CHT8	Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14	CHITINASE 8	Chitinase8, Chitinase 8, Pathogenesis related (PR)-3 chitinase 8, Pathogenesis related-3 chitinase 8, PR-3 chitinase 8, Class II chitinase a	CHITINASE 8		10	LOC_Os10g39680. PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q7XCK6. L40338. AB016497. CHIT14 in Liu et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0542900	LOC_Os10g39680.1				GO:0004568 - chitinase activity, GO:0042742 - defense response to bacterium, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process	TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance	
8131	CHT9	Cht9, Cht1	CHITINASE 9	Chitinase9, Chitinase 9, Pathogenesis related (PR)-3 chitinase 9, Chitinase-9	CHITINASE 9		5	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q688M5.	 Biochemical character	Os05g0399400	LOC_Os05g33140.1				GO:0006952 - defense response, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process, GO:0004568 - chitinase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008061 - chitin binding		
8132	COW1	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7	CONSTITUTIVELY WILTED 1	CONSTITUTIVELY WILTED1, Constitutively wilted 1, NARROW LEAF7, NARROW LEAF 7, YUCCA-LIKE GENE 8, flavin monooxygenase, rice ethylene-insensitive 7		cow1, cow1-1, cow1-2, nal7, rein7, rein7-1, rein7-2	3	LOC_Os03g06654. AB354302, AB354301. HQ443270, HQ443271. a member of the rice YUCCA gene family. GO:2000024: regulation of leaf development. TO:0020106: Indole-3-acetic acid content. an orthologue of AtYUCCA. GO:0090351: seedling development.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0162000	LOC_Os03g06654.2, LOC_Os03g06654.1				GO:0048825 - cotyledon development, GO:0009851 - auxin biosynthetic process, GO:0047434 - indolepyruvate decarboxylase activity, GO:0022603 - regulation of anatomical structure morphogenesis, GO:0030104 - water homeostasis, GO:0007275 - multicellular organismal development, GO:0009911 - positive regulation of flower development, GO:0005829 - cytosol, GO:0010229 - inflorescence development, GO:0050661 - NADP or NADPH binding, GO:0050660 - FAD binding, GO:0005654 - nucleoplasm, GO:0009734 - auxin mediated signaling pathway, GO:0004499 - flavin-containing monooxygenase activity, GO:0000139 - Golgi membrane	TO:0000492 - leaf shape	PO:0000025 - root tip , PO:0025034 - leaf , PO:0009047 - stem , PO:0020141 - stem node 
8133	COX-1	COX-1	CYCLOOXYGENASE 1		CYCLOOXYGENASE 1				 Biochemical character						GO:0004666 - prostaglandin-endoperoxide synthase activity		
8134	COX-2	COX-2	CYCLOOXYGENASE 2		CYCLOOXYGENASE 2				 Biochemical character						GO:0004666 - prostaglandin-endoperoxide synthase activity		
8135	DART	Dart	DNA-BASED ACTIVE RICE TRANSPOSON	DNA-based active rice transposon				AB206820.	 Other						GO:0032196 - transposition		
8136	GHD7	Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7	HEADING DATE 7	"heading date 7, \"Grain number, plant height, and heading date7\", \"GRAIN NUMBER, PLANT HEIGHT AND HEADING DATE 7\", CCT domain-containing gene 26, CCT (CO, CO-LIKE and TOC1) domain protein 26, CCT domain protein 26, CCT MOTIF FAMILY (CMF) gene 8, Early heading 7"	CCT DOMAIN PROTEIN	Ghd7-0, Ghd7-0a, Ghd7-1, Ghd7-2, Ghd7-3, Ghd7-4, Ghd7-5, Ghd7-6, Ghd7-7, ghd7, eh7	7	EU286800(Minghui 63 genomic), EU286801(Minghui 63 mRNA). OsI_25572. CCT domain protein. JF926532-JF926543 (Indica and Japonica). flowering time gene. TO:0020093: nitrogen content.	 Reproductive organ - Heading date,  Heterochrony,  Character as QTL - Yield and productivity	Os07g0261200	LOC_Os07g15770.1				GO:0009416 - response to light stimulus, GO:0009648 - photoperiodism, GO:0048573 - photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0002616 - flowering time, TO:0002759 - grain number, TO:0000137 - days to heading, TO:0000050 - inflorescence branching, TO:0000557 - secondary branch number, TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0000229 - photoperiod sensitivity	
8137	GIF1	gif1, CIN2, OsCIN2, OsGIF1	GRAIN  INCOMPLETE FILLING 1	"grain incomplete filling 1, \"Beta-fructofuranosidase, insoluble isoenzyme 2\", Sucrose hydrolase 2, Invertase 2, Cell wall beta-fructosidase 2, cell-wall invertase 2"	CELL WALL BETA-FRUCTOSIDASE 2	gif1	4	LOC_Os04g33740. EC=3.2.1.26 AY578159. AY340072. Q01IS7(indica). Q0JDC5(japonica). PO:0005019; carpel vascular system ; PO:0009084; pericarp ; PO:0006326; inflorescence internode ; PO:0000025; root tip ; PO:0009089; endosperm. GRO:0007141; C-embryo stage. GU797900-GU797949 (O. sativa and other wild rice species). AY575549. EU095553-EU095596 (O. sativa and O. rufipogon).	 Seed - Morphological traits,  Character as QTL - Yield and productivity	Os04g0413500	LOC_Os04g33740.1	GR:0080062			GO:0004564 - beta-fructofuranosidase activity, GO:0004575 - sucrose alpha-glucosidase activity, GO:0005618 - cell wall, GO:0005975 - carbohydrate metabolic process, GO:0005986 - sucrose biosynthetic process, GO:0005987 - sucrose catabolic process, GO:0016787 - hydrolase activity, GO:0048046 - apoplast, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000300 - glucose content, TO:0000311 - invertase activity, TO:0000396 - grain yield, TO:0006005 - fructose content, TO:0000196 - amylose content, TO:0002661 - seed maturation, TO:0000328 - sucrose content, TO:0000391 - seed size, TO:0000590 - grain weight, TO:0000097 - amylopectin content	PO:0000025 - root tip , PO:0005019 - carpel vascular system , PO:0006326 - inflorescence internode , PO:0009084 - pericarp , PO:0009089 - endosperm 
8139	NDART1	nDart, nDART1, nDART	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1	nonautonomous DNA-based active rice transposon, Nonautonomous Ds-related active rice transposon					 Other			GR:0061481			GO:0032196 - transposition		
8141	HK2	OHK1, HK, OsHK2, Ohk1	HISTIDINE KINASE 1	histidine kinase 1	HISTIDINE KINASE 1		6	BR000243, His-Kinase domain, Receiver domain. LOC_Os06g08450.	 Biochemical character	Os06g0183200	LOC_Os06g08450.1				GO:0000155 - two-component sensor activity, GO:0005524 - ATP binding, GO:0000156 - two-component response regulator activity, GO:0004673 - protein histidine kinase activity, GO:0018106 - peptidyl-histidine phosphorylation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016020 - membrane		
8142	HK3	OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b	HISTIDINE KINASE 3	histidine kinase 3, His kinase 3	HISTIDINE KINASE 3		1	BR000244. cytokinin receptor. CHASE domain for cytokinin binding, His-kinase domain (HK), Receiver domain (Rec). LOC_Os01g69920. two-component element. the ortholog of AtHK1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0923700 	LOC_Os01g69920.3, LOC_Os01g69920.2, LOC_Os01g69920.1				GO:0006979 - response to oxidative stress, GO:0004673 - protein histidine kinase activity, GO:0000155 - two-component sensor activity, GO:0009737 - response to abscisic acid stimulus, GO:0000156 - two-component response regulator activity	TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress	
8143	HK5	OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2	HISTIDINE KINASE 5	histidine kinase 5, His kinase 5	HISTIDINE KINASE 5		10	AB246778, BR000245. cytokinin receptor.CHASE domain for cytokinin binding, His-kinase domain (HK), Receiver domain (Rec). LOC_Os10g21810. two-component element. 	 Biochemical character	Os10g0362300	LOC_Os10g21810.2, LOC_Os10g21810.1				GO:0018106 - peptidyl-histidine phosphorylation, GO:0016020 - membrane, GO:0004673 - protein histidine kinase activity, GO:0005524 - ATP binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000155 - two-component sensor activity, GO:0000156 - two-component response regulator activity		
8144	HK4	OHK4, HK, OsHK4, Crl1b, Ohk4	HISTIDINE KINASE 4	histidine kinase 4, His kinase 4	HISTIDINE KINASE 4		3	BR000246. cytokinin receptor. CHASE domain for cytokinin binding, His-kinase domain (HK), Receiver domain (Rec). LOC_Os03g50860. two-component element. 	 Biochemical character	Os03g0717700	LOC_Os03g50860.1				GO:0018106 - peptidyl-histidine phosphorylation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000155 - two-component sensor activity, GO:0016020 - membrane, GO:0000156 - two-component response regulator activity, GO:0004673 - protein histidine kinase activity, GO:0005524 - ATP binding		
8145	CKT1	OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1	CYTOKININ TOLERANT 1 	histidine kinase 6, His kinase 6, cytokinin tolerant 1	HISTIDINE KINASE 6	Osckt1	2	BR000247. cytokinin receptor. CHASE domain for cytokinin binding, His-kinase domain (HK), Receiver domain (Rec). LOC_Os02g50480. two-component element. GO:2000280: regulation of root development. GO:2000904: regulation of starch metabolic process.	 Biochemical character,  Vegetative organ - Root	Os02g0738400	LOC_Os02g50480.1				GO:0018106 - peptidyl-histidine phosphorylation, GO:0015995 - chlorophyll biosynthetic process, GO:0010109 - regulation of photosynthesis, GO:0009884 - cytokinin receptor activity, GO:0009736 - cytokinin mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0005985 - sucrose metabolic process, GO:0005982 - starch metabolic process, GO:0000156 - two-component response regulator activity, GO:0005524 - ATP binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane, GO:0000155 - two-component sensor activity, GO:0048364 - root development, GO:0004673 - protein histidine kinase activity, GO:0043455 - regulation of secondary metabolic process	TO:0000167 - cytokinin sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0000025 - root tip , PO:0005029 - root primordium , PO:0000027 - lateral root tip , PO:0020121 - lateral root 
8146	AHP1	OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2	HISTIDINE CONTAINING PHOSPHOTRANSMITTER 1	histidine containing phosphotransmitter, authentic His-containing phosphotransfer protein 1, Authentic Histidine Phosphotransfer protein 1	HISTIDINE CONTAINING PHOSPHOTRANSMITTER 1	histidine containing phosphotransmitter	8	BR000248. Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein. LOC_Os08g44350.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os08g0557700	LOC_Os08g44350.1				GO:0000160 - two-component signal transduction system (phosphorelay), GO:0004871 - signal transducer activity	TO:0000420 - fertility related trait, TO:0000346 - tiller number, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity, TO:0000207 - plant height, TO:0000249 - leaf senescence	
8147	AHP2	OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, OsHpt3	HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2	histidine containing phosphotransmitter, authentic His-containing phosphotransfer protein 2	HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2	histidine containing phosphotransmitter	9	BR000249. Q6VAK4. Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os09g0567400	LOC_Os09g39400.2, LOC_Os09g39400.1				GO:0000160 - two-component signal transduction system (phosphorelay), GO:0004871 - signal transducer activity	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000420 - fertility related trait, TO:0000346 - tiller number, TO:0000249 - leaf senescence, TO:0000207 - plant height, TO:0000167 - cytokinin sensitivity, TO:0000656 - root development trait	
8148	RR21	OsRR21, Rrb1, Orr1, OsRR19, OsRRB1, ORR1	B-TYPE RESPONSE REGULATOR 1	B-type response regulator 1, B-type RR 1, ORYZA SATIVA RESPONSE REGULATOR 1	B-TYPE RESPONSE REGULATOR 1		3	BR000250, AB246780. B-type RR.	 Heterochrony	Os03g0224200	LOC_Os03g12350.4, LOC_Os03g12350.2, LOC_Os03g12350.1				GO:0009736 - cytokinin mediated signaling, GO:0045449 - regulation of transcription, GO:0000156 - two-component response regulator activity, GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay)	TO:0000167 - cytokinin sensitivity	
8149	RR22	OsRR22, Rrb4, Orr2, OsRR20, OsRRB4	B-TYPE RESPONSE REGULATOR 2	B-type response regulator 2, B-type RR 4	B-TYPE RESPONSE REGULATOR 2		6	BR000251. B-type RR.	 Heterochrony	Os06g0183100	LOC_Os06g08440.1				GO:0045449 - regulation of transcription, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity, GO:0009735 - response to cytokinin stimulus		
8150	RR23	OsRR23, Rrb5, Orr3, OsRR18, OsRRB5	B-TYPE RESPONSE REGULATOR 3	B-type response regulator 3, B-type RR 5	B-TYPE RESPONSE REGULATOR 3		2	BR000252, B-type RR.	 Heterochrony	Os02g0796500	LOC_Os02g55320.1				GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009735 - response to cytokinin stimulus, GO:0045449 - regulation of transcription, GO:0000156 - two-component response regulator activity		
8151	RR24	OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1	B-TYPE RESPONSE REGULATOR 4	B-type response regulator 4, B-type RR 2, LEPTOTENE1, LEPTOTENE 1	B-TYPE RESPONSE REGULATOR 4	lepto1	2	BR000253. B-type RR.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Heterochrony,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os02g0182100	LOC_Os02g08500.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009554 - megasporogenesis, GO:0048653 - anther development, GO:0012501 - programmed cell death, GO:0009555 - pollen development, GO:0052543 - callose deposition in cell wall, GO:0042138 - meiotic DNA double-strand break formation, GO:0051276 - chromosome organization, GO:0000237 - leptotene, GO:0009735 - response to cytokinin stimulus, GO:0000156 - two-component response regulator activity, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045449 - regulation of transcription	TO:0000485 - sterility related trait	
8152	RR25	OsRR25, Rrb3, Orr5, OsRR21, OsRRB3	B-TYPE RESPONSE REGULATOR 5	B-type response regulator 5, B-type RR 3	B-TYPE RESPONSE REGULATOR 5		6	BR000254. B-type RR.	 Heterochrony	Os06g0647200	LOC_Os06g43920.1, LOC_Os06g43910.1				GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045449 - regulation of transcription, GO:0000156 - two-component response regulator activity		
8153	RR26	OsRR26, Rrb6, Orr6, OsRR16, OsRRB6	B-TYPE RESPONSE REGULATOR 6	B-TYPE response regulator 6, B-type RR 6	B-TYPE RESPONSE REGULATOR 6		1	BR000255. B-type RR. mesocotyl length candidate gene.	 Heterochrony	Os01g0904700 	LOC_Os01g67770.1				GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045449 - regulation of transcription, GO:0000156 - two-component response regulator activity		
8154	RR1	rr1, OsRR1, Rra9, OsRRA9	A-TYPE RESPONSE REGULATOR 1	A-TYPE response regulator 1, Type A response regulator 1, A-type RR 9	A-TYPE RESPONSE REGULATOR 1		4	LOC_Os04g36070. A-type RR. BR000311. AB249661. 	 Reproductive organ - Heading date	Os04g0442300	LOC_Os04g36070.1	GR:0020055			GO:0009733 - response to auxin stimulus, GO:0045449 - regulation of transcription, GO:2000028 - regulation of photoperiodism, flowering, GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000137 - days to heading	
8155	RR10	OsRR10, Rra2, OsRRA2, RR2	A-TYPE RESPONSE REGULATOR 10	A-TYPE response regulator 10, A-type RR 2	A-TYPE RESPONSE REGULATOR 10		12	LOC_Os12g04500. BR000257. AB249660. A-type RR.		Os12g0139400	LOC_Os12g04500.1				GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045449 - regulation of transcription, GO:0000156 - two-component response regulator activity, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
8156	RR11	OsRR11, Rra8, OsRRA8, RR8	A-TYPE RESPONSE REGULATOR 11	A-TYPE response regulator 11, A-type RR 8	A-TYPE RESPONSE REGULATOR 11		2	LOC_Os02g42060. BR000318. AB249656. A-type RR.		Os02g0631700 	LOC_Os02g42060.1				GO:0000156 - two-component response regulator activity, GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045449 - regulation of transcription, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
8157	RR12	OsRR12, Rra11, OsRR8, RR8, OsRRA11	A-TYPE RESPONSE REGULATOR 12	A-TYPE response regulator 12, A-type RR 11	A-TYPE RESPONSE REGULATOR 12		8	LOC_Os08g28950. BR000319, AB249664. A-type RR. 		Os08g0377200 	LOC_Os08g28950.1				GO:0000156 - two-component response regulator activity, GO:0045449 - regulation of transcription, GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0007593 - chitin-based cuticle tanning	TO:0000167 - cytokinin sensitivity	
8158	RR13	OsRR13, Rra12, OsRR12, OsRRA12, RR12	A-TYPE RESPONSE REGULATOR 13	A-TYPE response regulator 13, A-type RR 12	A-TYPE RESPONSE REGULATOR 13		8	LOC_Os08g26990. BR000320. AB249665. A-type RR.		Os08g0358800 	LOC_Os08g26990.1				GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045449 - regulation of transcription, GO:0009735 - response to cytokinin stimulus, GO:0000156 - two-component response regulator activity	TO:0000167 - cytokinin sensitivity	
8159	RR2	rr2, Osrr2, OsRR2, Rra10, OsRRA10	A-TYPE RESPONSE REGULATOR 2	A-TYPE response regulator 2, Type A response regulator 2, A-type RR 10	A-TYPE RESPONSE REGULATOR 2		2	LOC_Os02g35180. A-type RR. BR000312. AB249662. 	 Vegetative organ - Root	Os02g0557800	LOC_Os02g35180.1	GR:0020056			GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009736 - cytokinin mediated signaling, GO:0009733 - response to auxin stimulus, GO:0000156 - two-component response regulator activity, GO:0045449 - regulation of transcription, GO:0009735 - response to cytokinin stimulus, GO:0048364 - root development	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait	PO:0007504 - crown root primordium formation stage 
8160	RR3	OSRR3, OsRR3, rr3, Rra7, OsRRA7	A-TYPE RESPONSE REGULATOR 3	A-TYPE response regulator 3, Type A response regulator 3, A-type RR 7	A-TYPE RESPONSE REGULATOR 3		2	LOC_Os02g58350. BR000313. AJ938072, AP004043. AB249655. A-type RR.		Os02g0830200	LOC_Os02g58350.1	GR:0020057			GO:0000156 - two-component response regulator activity, GO:0009733 - response to auxin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009536 - plastid, GO:0045449 - regulation of transcription, GO:0009735 - response to cytokinin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
8161	RR4	rr4, OsRR4, Rra3, OsRRA3	A-TYPE RESPONSE REGULATOR 4	A-TYPE response regulator 4, Type A response regulator 4, A-type RR 3	A-TYPE RESPONSE REGULATOR 4		1	LOC_Os01g72330. A-type RR. BR000258. AB249658. 	 Tolerance and resistance - Stress tolerance	Os01g0952500	LOC_Os01g72330.1	GR:0020058			GO:0009736 - cytokinin mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0045449 - regulation of transcription, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity, GO:0009409 - response to cold, GO:0009733 - response to auxin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance	
8162	RR5	rr5, OsRR5, Rra4, OsRRA4	A-TYPE RESPONSE REGULATOR 5	A-TYPE response regulator 5, Type A response regulator 5, A-type RR 4	A-TYPE RESPONSE REGULATOR 5		4	LOC_Os04g44280. A-type RR. BR000314. AB249654.		Os04g0524300	LOC_Os04g44280.1	GR:0020059			GO:0005739 - mitochondrion, GO:0045449 - regulation of transcription, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity, GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity	
8163	RR6	OsRR6, rr6, Rra6, OsRRA6	A-TYPE RESPONSE REGULATOR 6	A-TYPE response regulator 6, Type A response regulator 6, A-type RR 6	A-TYPE RESPONSE REGULATOR 6		4	LOC_Os04g57720. BR000315. AB249653.		Os04g0673300	LOC_Os04g57720.1	GR:0020060			GO:0005739 - mitochondrion, GO:0000156 - two-component response regulator activity, GO:0009733 - response to auxin stimulus, GO:0009736 - cytokinin mediated signaling, GO:0009536 - plastid, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009735 - response to cytokinin stimulus, GO:0045449 - regulation of transcription	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
8164	RR7	rr7, OsRR7, Rra5, OsRRA5	A-TYPE RESPONSE REGULATOR 7	A-TYPE response regulator 7, Type A response regulator 7, A-type RR 5	A-TYPE RESPONSE REGULATOR 7		7	LOC_Os07g26720. A-type RR. BR000316. AB249657. Q0PVB3.		Os07g0449700	LOC_Os07g26720.2, LOC_Os07g26720.1	GR:0020061			GO:0009733 - response to auxin stimulus, GO:0000156 - two-component response regulator activity, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045449 - regulation of transcription, GO:0009735 - response to cytokinin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
8165	RR8	rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13	A-TYPE RESPONSE REGULATOR 8	A-TYPE response regulator 8, Type A response regulator 8, A-type RR 13	A-TYPE RESPONSE REGULATOR 8		8	LOC_Os08g28900. A-type RR. BR000317. AB249663. OsRR8 and OsRR15 in Tao et al. 2017.		Os08g0376700	LOC_Os08g28900.1	GR:0020062			GO:0000156 - two-component response regulator activity, GO:0045449 - regulation of transcription, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity	
8166	RR9	OsRR9, Rra1, OsRRA1, OsRR10, RR10	A-TYPE RESPONSE REGULATOR 9	A-TYPE response regulator 9, A-type RR 1	A-TYPE RESPONSE REGULATOR 9		11	LOC_Os11g04720. BR000256. A-type RR. OsRR10 in Li et al. 2016. 		Os11g0143300	LOC_Os11g04720.2, LOC_Os11g04720.1				GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0045449 - regulation of transcription	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
8167	SPL17	spl17	SPOTTED LEAF 17	spotted leaf 17					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8168	SPL18	Spl18, OsAT1	SPOTTED LEAF 18	spotted leaf 18	ACYLTRANSFERASE 1		10		 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os10g0195600	LOC_Os10g11980.1				GO:0006952 - defense response, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
8169	SPL19	spl19	SPOTTED LEAF 19	spotted leaf 19					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8170	SPL20	spl20	SPOTTED LEAF 20	spotted leaf 20					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8171	SPL21	spl21	SPOTTED LEAF 21	spotted leaf 21					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8172	SPL22	spl22	SPOTTED LEAF 22	spotted leaf 22					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8173	SPL23	spl23	SPOTTED LEAF 23	spotted leaf 23					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8174	SPL24	Spl24	SPOTTED LEAF 24	spotted leaf 24					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8175	SPL25	spl25	SPOTTED LEAF 25	spotted leaf 25					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8176	SPL26	Spl26	SPOTTED LEAF 26	spotted leaf 26					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8177	SPL27	Spl27	SPOTTED LEAF 27	spotted leaf 27					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8179	YUCCA9	OsYUCCA9, OsYUC9, YUC9	YUCCA-LIKE GENE 9	(YUCCA-like gene)			1	LOC_Os01g16714. an orthologue of AtYUCCA.	 Biochemical character	Os01g0273800	LOC_Os01g16714.1				GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity		
8180	AM1	AM1, prx53	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 1	class III peroxidase 53	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 1		4	LOC_Os04g04750. BN000595. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0134800	LOC_Os04g04750.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus		
8181	AM2	AM2	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 2		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 2		8	LOC_Os08g34249. Os08g0441200 (in Rap3 (build5)). GO:0036377: arbuscular mycorrhizal association.	 Vegetative organ - Root		LOC_Os08g34249				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus		
8182	AM3	AM3	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 3		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 3		1	LOC_Os01g57400. GO:0036377: arbuscular mycorrhizal association. common symbiotic pathway.	 Vegetative organ - Root	Os01g0783000	LOC_Os01g57400.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus		
8183	AM10	AM10	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 10		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 10		5	Os05g22300	 Vegetative organ - Root	Os05g0289700	LOC_Os05g22300.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8184	AM11	AM11	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 11		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 11		6	LOC_Os06g20120. GO:0036377: arbuscular mycorrhizal association. common symbiotic pathway.	 Vegetative organ - Root	Os06g0305400	LOC_Os06g20120.1, LOC_Os06g20110.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus		
8185	AM14	AM14	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 14		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 14		11	LOC_Os11g26140. 	 Vegetative organ - Root	Os11g0448200					GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8186	AM15	AM15	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 15		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 15		1	Os01g57390	 Vegetative organ - Root	Os01g0782901	LOC_Os01g57390.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8187	GRAS16	AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16	GRAS PROTEIN 16	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 18, GRAS protein 16	GRAS PROTEIN 16		3	LOC_Os03g40080. Os03g0597900 (in Rap3 (build5)).	 Vegetative organ - Root		LOC_Os03g40080				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8188	AM20	AM20	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 20		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 20		4	Os04g21160	 Vegetative organ - Root	Os04g0280600	LOC_Os04g21160.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8189	AM24	AM24	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 24		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 24		2	Os02g03190	 Vegetative organ - Root	Os02g0124300	LOC_Os02g03190.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8190	AM25	AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 25	Aquaporin NIP1-4, NOD26-like intrinsic protein 1-4	AQUAPORIN NIP1-4		6	AP003682, Q5Z9E2. LOC_Os06g35930.	 Biochemical character,  Vegetative organ - Root	Os06g0552700	LOC_Os06g35930.1				GO:0016021 - integral to membrane, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0005215 - transporter activity		
8191	AM26	AM26	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 26		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 26		12	Os12g30300	 Vegetative organ - Root	Os12g0487250					GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8192	AM29	AM29	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 29		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 29		6	Os06g34470	 Vegetative organ - Root	Os06g0535900	LOC_Os06g34470.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8193	AM31	AM31	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 31		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 31		2	Os02g03150	 Vegetative organ - Root	Os02g0124000	LOC_Os02g03150.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8194	AM34	AM34	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 34		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 34		10	LOC_Os10g18510. Os10g0331700 (in Rap2 (build4)).	 Vegetative organ - Root	Os10g0332000	LOC_Os10g18510.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8195	AM39	AM39	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 39		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 39		4	Os04g13090	 Vegetative organ - Root	Os04g0207600	LOC_Os04g13090.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8196	AM42	AM42	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 42		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 42		3	Os03g38600	 Vegetative organ - Root	Os03g0582300	LOC_Os03g38600.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8197	BAD1	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5	BETAINE ALDEHYDE DEHYDROGENASE 1	betaine aldehyde dehydrogenase 1, Aldehyde dehydrogenase 10A5	BETAINE ALDEHYDE DEHYDROGENASE 1		4	LOC_Os04g39020. O24174. DQ234303. KC609097-KC609109 (O. sativa and wild rice species, partial cds).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0464200	LOC_Os04g39020.1				GO:0008802 - betaine-aldehyde dehydrogenase activity, GO:0009414 - response to water deprivation, GO:0019285 - glycine betaine biosynthetic process from choline, GO:0005777 - peroxisome, GO:0005618 - cell wall, GO:0010037 - response to carbon dioxide, GO:0009416 - response to light stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0009651 - response to salt stress	TO:0000286 - submergence sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000075 - light sensitivity	
8199	CASTOR	Os-CASTOR	CASTOR	Probable ion channel DMI1-like, chloroplastic	CATION CHANNEL PROTEIN		3	Os03g62650. CATION CHANNEL PROTEIN. Q75LD5.	 Biochemical character	Os03g0843600	LOC_Os03g62650.3, LOC_Os03g62650.2, LOC_Os03g62650.1				GO:0016021 - integral to membrane, GO:0005488 - binding, GO:0003824 - catalytic activity, GO:0005216 - ion channel activity, GO:0006811 - ion transport, GO:0008152 - metabolic process, GO:0009507 - chloroplast		
8202	HWH1	hwh1	HYBRID WEAKNESS H1	hybrid weakness h1	GMC OXIDOREDUCTASE	hwh1, Hwh1	2	LOC_Os02g40840	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os02g0621800	LOC_Os02g40840.1				GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen		
8203	HWH2	hwh2	HYBRID WEAKNESS H2	hybrid weakness h2	PUTATIVE HEXOSE TRANSPORTER PROTEIN	hwh2, Hwh2	11	LOC_Os11g28610	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os11g0475600	LOC_Os11g28610.1				GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development		
8204	NUP85	NUP85	NUCLEAR PORIN 85		NUCLEAR PORIN 85		1	Os01g54240	 Biochemical character	Os01g0746200	LOC_Os01g54240.2, LOC_Os01g54240.1				GO:0017056 - structural constituent of nuclear pore, GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8205	NUP133	NUP133	NUCLEAR PORIN 133		NUCLEAR PORIN 133		3	Os03g12450	 Biochemical character	Os03g0225500	LOC_Os03g12450.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0017056 - structural constituent of nuclear pore		
8206	POLLUX	OsPOLLUX, Os-POLLUX	POLLUX	Probable ion channel DMI1, chloroplastic	CATION CHANNEL PROTEIN		1	Os01g64980. CATION CHANNEL PROTEIN. Q5N941.	 Biochemical character	Os01g0870100	LOC_Os01g64980.2, LOC_Os01g64980.1				GO:0005488 - binding, GO:0006810 - transport, GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0009507 - chloroplast, GO:0016021 - integral to membrane		
8207	SAF	SaF, OsFbox019, OsFbox19, Os_F0070	HYBRID STERILITY	Hybrid male sterility, F-box protein 19	F-BOX PROTEIN	SaF+, SaF-, SaFX	1	EU337975, EU337974. LOC_Os01g39670. PO:0020091; male gametophyte. Os_F0070 in Hua et al. 2011. KF893060-KF893148.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os01g0578500	LOC_Os01g39670.1	GR:0080064			GO:0009556 - microsporogenesis, GO:0016829 - lyase activity	TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0020091 - obsolete microgametophyte 
8208	SAM	SaM	HYBRID STERILITY	Hybrid male sterility	SMALL UBIQUITIN-LIKE MODIFIER E3 LIGASE-LIKE PROTEIN	SaM+, SaM-, SaM+X, SaM-X	1	EU337977, EU337976. LOC_Os01g39680. small ubiquitin-like modifier E3 ligase-like protein. PO:0020091; male gametophyte. KF893149-KF893259. Os01g0578600 (in Ncbi and UniProt).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os01g0578700	LOC_Os01g39680.3, LOC_Os01g39680.2, LOC_Os01g39680.1	GR:0080063			GO:0019789 - SUMO ligase activity, GO:0009556 - microsporogenesis	TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	PO:0020091 - obsolete microgametophyte 
8209	SAMDC	SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1	S-ADENOSYLMETHIONINE DECARBOXYLASE	S-adenosylmethionine decarboxylase, S-adenosylmethionine decarboxylase proenzyme, S-adenosylmethionine decarboxylase alpha chain, S-adenosylmethionine decarboxylase beta chain, S-adenosylmethionine decarboxylase 1	S-ADENOSYLMETHIONINE DECARBOXYLASE		4	LOC_Os04g42095. AF067194. AJ251899, Y07766. EC=4.1.1.50 A2XV58(indica), Q0JC10(japonica). C26568, AU108589. OsSAMDC1 in Chen et al. 2014.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0498600	LOC_Os04g42095.1, LOC_Os04g42090.5, LOC_Os04g42090.4, LOC_Os04g42090.3, LOC_Os04g42090.2, LOC_Os04g42090.1				GO:0009845 - seed germination, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0006596 - polyamine biosynthetic process, GO:0016209 - antioxidant activity, GO:0009846 - pollen germination, GO:0009651 - response to salt stress, GO:0009555 - pollen development, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0008295 - spermidine biosynthetic process, GO:0006597 - spermine biosynthetic process	TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0000432 - temperature response trait, TO:0000421 - pollen fertility, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000430 - germination rate, TO:0000449 - grain yield per plant	
8210	SRWD1	SRWD1, OsWD40-162	SALT RESPONSIVE WD40 PROTEIN 1	salt responsive WD40 protein 1	SALT RESPONSIVE WD40 PROTEIN 1		8	AK112033, LOC_Os08g38880. CT830086.	 Tolerance and resistance - Stress tolerance	Os08g0497600	LOC_Os08g38880.6, LOC_Os08g38880.5, LOC_Os08g38880.4, LOC_Os08g38880.3, LOC_Os08g38880.2, LOC_Os08g38880.1				GO:0009651 - response to salt stress		
8211	SRWD2	SRWD2, OsWD40-52	SALT RESPONSIVE WD40 PROTEIN 2	salt responsive WD40 protein 2	SALT RESPONSIVE WD40 PROTEIN 2		2	AK111506, LOC_Os02g48964	 Tolerance and resistance - Stress tolerance	Os02g0721600	LOC_Os02g48964.1				GO:0009651 - response to salt stress		
8212	SRWD3	SRWD3, OsWD40-126	SALT RESPONSIVE WD40 PROTEIN 3	salt responsive WD40 protein 3	SALT RESPONSIVE WD40 PROTEIN 3		6	AK100886, LOC_Os06g07540. EU837247, CT831118.	 Tolerance and resistance - Stress tolerance	Os06g0171900	LOC_Os06g07540.3, LOC_Os06g07540.2, LOC_Os06g07540.1				GO:0009651 - response to salt stress		
8213	SRWD4	SRWD4, OsWD40-160	SALT RESPONSIVE WD40 PROTEIN 4	salt responsive WD40 protein 4	SALT RESPONSIVE WD40 PROTEIN 4		8	AK111715, LOC_Os08g31560	 Tolerance and resistance - Stress tolerance	Os08g0408200	LOC_Os08g31560.1				GO:0009651 - response to salt stress		
8214	SRWD5	SRWD5, OsWD40-73	SALT RESPONSIVE WD40 PROTEIN 5	salt responsive WD40 protein 5	SALT RESPONSIVE WD40 PROTEIN 5		3	AK072984, LOC_Os03g26870. EU718734.	 Tolerance and resistance - Stress tolerance	Os03g0386000	LOC_Os03g26870.2, LOC_Os03g26870.1				GO:0009651 - response to salt stress		
8215	SYMRK	OsSYMRK	SYMBIOSIS LEU-RICH REPEAT RECEPTOR KINASE	Symbiosis receptor kinase	SYMBIOSIS LEU-RICH REPEAT RECEPTOR KINASE		7	LOC_Os07g38070. a rice ortholog of Medicago trunculata NORK/SYMRK. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character	Os07g0568100	LOC_Os07g38070.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0009877 - nodulation, GO:0009620 - response to fungus, GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8216	PT1	OsPT1, PHT1-1, OsPht1;1, Pht1;1	PHOSPHATE TRANSPORTER 1	Inorganic phosphate transporter 1-1, phosphate transporter 1	PHOSPHATE TRANSPORTER 1	ospt1	3	AF536961. H(+)/Pi cotransporter. Q8H6H4. LOC_Os03g05620.	 Biochemical character	Os03g0150600	LOC_Os03g05620.1				GO:0016020 - membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0015293 - symporter activity, GO:0006817 - phosphate transport, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		PO:0020103 - flag leaf 
8217	PT2	OsPT2, PTH1-2, OsPht1;2, PHT1;2	PHOSPHATE TRANSPORTER 2	High affinity phosphate transporter 2, Inorganic phosphate transporter 1-2	PHOSPHATE TRANSPORTER 2		3	AF536962. H(+)/Pi cotransporter, OsPT1. Q8GSD9. TO:0020102: phosphate content. TO:0006055: selenium concentration. LOC_Os03g05640.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0150800	LOC_Os03g05640.1				GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0015293 - symporter activity, GO:0006817 - phosphate transport, GO:0016036 - cellular response to phosphate starvation, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0016020 - membrane, GO:0016021 - integral to membrane	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009005 - root 
8218	PT3	OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3	PHOSPHATE TRANSPORTER 3	Probable inorganic phosphate transporter 1-3	PHOSPHATE TRANSPORTER 3	ospht1;3	10	AF536963. AF239619. H(+)/Pi cotransporter, PT1. Q7XDZ7. OjPT1 (from O. stiva L. ssp. Japonica Jingxi18) in Yu et al. 2001. TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0444600	LOC_Os10g30770.1				GO:0042594 - response to starvation, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0006817 - phosphate transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane		PO:0005417 - phloem , PO:0005020 - vascular bundle 
8219	PT4	OsPT4, PHT1-4, OsPht1;4, PHT1-2	PHOSPHATE TRANSPORTER 4	Probable inorganic phosphate transporter 1-4	PHOSPHATE TRANSPORTER 4	ospt4-1, ospt4-2	4	AF536964. H(+)/Pi cotransporter, PT1, OsPT1. Q01MW8(indica). Q8H6H2(japonica). TO:0020102: phosphate content. LOC_Os04g10750.	 Biochemical character,  Seed - Morphological traits - Embryo,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os04g0186400	LOC_Os04g10750.4, LOC_Os04g10750.3, LOC_Os04g10750.2, LOC_Os04g10750.1				GO:0009790 - embryonic development, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0009739 - response to gibberellin stimulus, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0009845 - seed germination, GO:0006817 - phosphate transport, GO:0046685 - response to arsenic, GO:0055085 - transmembrane transport, GO:0015293 - symporter activity, GO:0016036 - cellular response to phosphate starvation	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0007631 - plant embryo stage , PO:0009009 - plant embryo , PO:0020103 - flag leaf , PO:0007057 - 0 seed germination stage 
8220	PT5	OsPT5, OsPht1;5, Pht1;5, PHT1-5	PHOSPHATE TRANSPORTER 5	Probable inorganic phosphate transporter 1-5	PHOSPHATE TRANSPORTER 5	ospt5	4	LOC_Os04g10690. Q7X7V2. AF536965. H(+)/Pi cotransporter. TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0185600	LOC_Os04g10690.1				GO:0015293 - symporter activity, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0006817 - phosphate transport, GO:0016036 - cellular response to phosphate starvation, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0000102 - phosphorus sensitivity	
8221	PT6	OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1	PHOSPHATE TRANSPORTER 6	Inorganic phosphate transporter 1-6	PHOSPHATE TRANSPORTER 6		8	AF536966. AF335588. H(+)/Pi cotransporter. Q8H6H0. LOC_Os08g45000. a target gene of miR399.	 Biochemical character	Os08g0564000	LOC_Os08g45000.1				GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0006817 - phosphate transport, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009733 - response to auxin stimulus, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0005886 - plasma membrane	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0005052 - plant callus 
8222	PT7	OsPT7, PHT1-7, OsPht1;7	PHOSPHATE TRANSPORTER 7	Probable inorganic phosphate transporter 1-7	PHOSPHATE TRANSPORTER 7		3	AF536967. H(+)/Pi cotransporter. Q8H6G9. LOC_Os03g04360.	 Biochemical character	Os03g0136400	LOC_Os03g04360.1				GO:0016020 - membrane, GO:0006817 - phosphate transport, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005886 - plasma membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0015293 - symporter activity	TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
8223	PT8	OsPT8, PHT1-8, OsPht1;8, Pht1;8	PHOSPHATE TRANSPORTER 8	Probable inorganic phosphate transporter 1-8	PHOSPHATE TRANSPORTER 8		10	AF536968. H(+)/Pi cotransporter. Q8H6G8. LOC_Os10g30790. TO:0020102: phosphate content. TO:0006054: arsenic concentration. arsenate uptake transporter.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0444700	LOC_Os10g30790.2, LOC_Os10g30790.1				GO:0015293 - symporter activity, GO:0016036 - cellular response to phosphate starvation, GO:0016021 - integral to membrane, GO:0009733 - response to auxin stimulus, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0055085 - transmembrane transport, GO:0009737 - response to abscisic acid stimulus, GO:0046685 - response to arsenic, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0006817 - phosphate transport	TO:0000102 - phosphorus sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	
8224	PT9	OsPT9, PHT1-9, OsPht1;9	PHOSPHATE TRANSPORTER 9	Probable inorganic phosphate transporter 1-9	PHOSPHATE TRANSPORTER 9		6	AF536969. H(+)/Pi cotransporter. Q8H6G7. LOC_Os06g21920.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0324800	LOC_Os06g21920.1				GO:0016036 - cellular response to phosphate starvation, GO:0005739 - mitochondrion, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0006817 - phosphate transport		
8225	PT10	OsPT10, PHT1-10, OsPht1;10	PHOSPHATE TRANSPORTER 10	Probable inorganic phosphate transporter 1-10	PHOSPHATE TRANSPORTER 10		6	AF536970. H(+)/Pi cotransporter. Q69T94. LOC_Os06g21950. OsPT9 in Pandey et al. 2017.	 Biochemical character	Os06g0325200	LOC_Os06g21950.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0015293 - symporter activity, GO:0006817 - phosphate transport		
8226	PT11	OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11	PHOSPHATE TRANSPORTER 11	Inorganic phosphate transporter 1-11, PHOSPHATE TRANSPORTER1;11	PHOSPHATE TRANSPORTER 11		1	LOC_Os01g46860. AK536971. H(+)/Pi cotransporter. Q94DB8.	 Biochemical character	Os01g0657100	LOC_Os01g46860.1				GO:0006810 - transport, GO:0005215 - transporter activity, GO:0009733 - response to auxin stimulus, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0006817 - phosphate transport, GO:0055085 - transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009029 - stamen 
8227	PT12	OsPT12, PHT1-12, OsPht1;12	PHOSPHATE TRANSPORTER 12	Probable inorganic phosphate transporter 1-12	PHOSPHATE TRANSPORTER 12		3	AF536972. H(+)/Pi cotransporter. Q8H074. LOC_Os03g05610.	 Biochemical character	Os03g0150500	LOC_Os03g05610.1				GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0006817 - phosphate transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	
8228	PT13	OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13	PHOSPHATE TRANSPORTER 13	Putative inorganic phosphate transporter 1-13, PHOSPHATE TRANSPORTER1;13	PHOSPHATE TRANSPORTER 13	pt13-1	4	AF536973. H(+)/Pi cotransporter. Q7XRH8. LOC_Os04g10800.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os04g0186800	LOC_Os04g10800.1				GO:0002213 - defense response to insect, GO:0006817 - phosphate transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity	PO:0020103 - flag leaf 
8229	AOX1A	Ao1-1, AOX1a, OsAOX1a, AOX 1a	ALTERNATIVE OXIDASE 1A	alternative oxidase-1a	ALTERNATIVE OXIDASE 1A		4	LOC_Os04g51150. D38902, AB004864, AB004813, AB007452. 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os04g0600200	LOC_Os04g51150.1	GR:0061073			GO:0070469 - respiratory chain, GO:0016021 - integral to membrane, GO:0005740 - mitochondrial envelope, GO:0007585 - respiratory gaseous exchange, GO:0022900 - electron transport chain, GO:0046872 - metal ion binding, GO:0009916 - alternative oxidase activity, GO:0016491 - oxidoreductase activity	TO:0000432 - temperature response trait	PO:0000003 - whole plant 
8230	AOX1B	AOX1b, OsAOX1b	ALTERNATIVE OXIDASE 1B	alternative oxidase-1b	ALTERNATIVE OXIDASE 1B		4	LOC_Os04g51160. D22433, AB004865, AB004813. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0600300	LOC_Os04g51160.1	GR:0061074			GO:0009916 - alternative oxidase activity, GO:0016491 - oxidoreductase activity, GO:0022900 - electron transport chain, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0007585 - respiratory gaseous exchange, GO:0070469 - respiratory chain, GO:0005740 - mitochondrial envelope	TO:0000432 - temperature response trait	PO:0000003 - whole plant 
8231	AOX1C	OsAOX1c	ALTERNATIVE OXIDASE 1C	alternative oxidase-1c, Os-ubiquinol oxidase 1, ubiquinol oxidase 1	ALTERNATIVE OXIDASE 1C		2	AB074005. PO:0009011; plant structure ; PO:0000003; whole plant.	 Biochemical character	Os02g0700400	LOC_Os02g47200.1	GR:0061075			GO:0005740 - mitochondrial envelope, GO:0070469 - respiratory chain, GO:0009916 - alternative oxidase activity, GO:0007585 - respiratory gaseous exchange, GO:0016491 - oxidoreductase activity, GO:0022900 - electron transport chain, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane		PO:0000003 - whole plant , PO:0009011 - plant structure 
8232	DCW11	DCW11, OsPP2C13, PP2C13, OsPP22	DOWN-REGULATED GENE 11	Probable protein phosphatase 2C 13, protein phosphatase 2C 13, protein phosphatase 2C13, protein phosphatase 22	MITOCHONDRIAL PROTEIN PHOSPHATASE 2C		2	LOC_Os02g15594. AK069289. EC=3.1.3.16 Q6EN45.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0255100	LOC_Os02g15594.1				GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0030145 - manganese ion binding, GO:0000287 - magnesium ion binding, GO:0008287 - protein serine/threonine phosphatase complex		
8233	GLP1	OsGLP1, GER1, GER5, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14	GERMIN-LIKE PROTEIN 1	Germin-like protein 8-14, Germin-like protein 5, Germin-like protein 1, Germin protein type 1, germin-like protein1	GERMIN-LIKE PROTEIN 1		8	AB010876, AB015593. AF032975. Q6ZBZ2. OsGLP8-14 in Li et al. 2016, Das et al. 2019.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0460000	LOC_Os08g35760.1				GO:0009409 - response to cold, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0010229 - inflorescence development	TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
8234	GLP12-1	OsGLP12-1	GERMIN-LIKE PROTEIN 12-1	Germin-like protein 12-1	GERMIN-LIKE PROTEIN 12-1		12	Q2QXJ4.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os12g0154700	LOC_Os12g05840.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
8235	GLP12-2	OsGLP12-2	GERMIN-LIKE PROTEIN 12-2	Germin-like protein 12-2	GERMIN-LIKE PROTEIN 12-2		12	Q2QXJ2.	 Seed - Physiological traits - Storage substances	Os12g0154800	LOC_Os12g05860.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast		
8236	GLP12-3	OsGLP12-3	GERMIN-LIKE PROTEIN 12-3		GERMIN-LIKE PROTEIN 12-3		12		 Seed - Physiological traits - Storage substances	Os12g0154900	LOC_Os12g05870.1				GO:0030145 - manganese ion binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast		
8237	GLP8-11	OsGLP8-11, RGLP1, OsRGLP1	GERMIN-LIKE PROTEIN 8-11	Germin-like protein 8-11	GERMIN-LIKE PROTEIN 8-11		8	Q6YZY5. RGLP1 in Ma et al. 2013.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0190100	LOC_Os08g09080.2, LOC_Os08g09080.1				GO:0030912 - response to deep water, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0005618 - cell wall, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0002242 - defense response to parasitic plant, GO:0048046 - apoplast, GO:0009723 - response to ethylene stimulus	TO:0000286 - submergence sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000444 - parasitic weed, TO:0000173 - ethylene sensitivity	PO:0009010 - seed 
8238	GLP8-12	OsGLP8-12	GERMIN-LIKE PROTEIN 8-12	Germin-like protein 8-12	GERMIN-LIKE PROTEIN 8-12		8	Q6ZCR3.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0231400	LOC_Os08g13440.3, LOC_Os08g13440.2, LOC_Os08g13440.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0009723 - response to ethylene stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000173 - ethylene sensitivity	
8239	GLP8-2	OsGLP8-2, GER3, OsGER3, GLP16, OsEnS-117	GERMIN-LIKE PROTEIN 8-2	Germin-like protein 8-2, Germin-like protein 3, Germin-like protein 16, endosperm-specific gene 117	GERMIN-LIKE PROTEIN 8-2		8	Q6YZA9. EF444528. AF032973.	 Seed,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0189100	LOC_Os08g08960.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0048316 - seed development	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
8240	GLP8-5	OsGLP8-5	GERMIN-LIKE PROTEIN 8-5	Germin-like protein 8-5	GERMIN-LIKE PROTEIN 8-5		8	Q6YZA6.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0189400	LOC_Os08g08990.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast		
8241	GLP8-6	OsGLP8-6	GERMIN-LIKE PROTEIN 8-6	Germin-like protein 8-6	GERMIN-LIKE PROTEIN 8-6		8	Q6YZA4.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0189500	LOC_Os08g09000.1				GO:0048046 - apoplast, GO:0045735 - nutrient reservoir activity, GO:0030145 - manganese ion binding, GO:0016023 - cytoplasmic membrane-bounded vesicle		
8242	GLP8-7	OsGLP8-7, GER6, OsRGLP2, RGLP2	GERMIN-LIKE PROTEIN 8-7	Germin-like protein 8-7, Germin-like protein 6, germin-like protein gene 2, Root GLP 2, root GLP2, root Germin-like protein 2	GERMIN-LIKE PROTEIN 8-7		8	AF032976. Q6YZZ2. DQ414400 (promoter sequence). GO:0071588: hydrogen peroxide mediated signaling pathway.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0189600	LOC_Os08g09010.1				GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect, GO:0034059 - response to anoxia, GO:0009409 - response to cold, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0050832 - defense response to fungus, GO:0005618 - cell wall, GO:0002242 - defense response to parasitic plant	TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance, TO:0000015 - oxygen sensitivity, TO:0000168 - abiotic stress trait, TO:0000112 - disease resistance, TO:0000249 - leaf senescence, TO:0000188 - drought sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000075 - light sensitivity, TO:0000167 - cytokinin sensitivity, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000444 - parasitic weed	PO:0009010 - seed 
8243	GLP8-8	OsGLP8-8	GERMIN-LIKE PROTEIN 8-8	Germin-like protein 8-8	GERMIN-LIKE PROTEIN 8-8		8	Q6YZA1.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0189700	LOC_Os08g09020.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast		
8244	GLP8-9	OsGLP8-9	GERMIN-LIKE PROTEIN 8-9	Germin-like protein 8-9	GERMIN-LIKE PROTEIN 8-9		8	Q6YZ99.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0189850	LOC_Os08g09040.1				GO:0048046 - apoplast, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity		
8245	RF2A	RF2a, OsbZIP75	bZIP TRANSCRIPTION FACTOR RF2A	Transcription factor RF2a, bZIP transcription factor 75	bZIP TRANSCRIPTION FACTOR RF2A		9	AF005492. Q69IL4.	 Other	Os09g0516200	LOC_Os09g34060.1				GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus		
8246	RF2B	RF2b, OsbZIP30	bZIP TRANSCRIPTION FACTOR RF2B	Transcription factor RF2b, bZIP transcription factor 30	bZIP TRANSCRIPTION FACTOR RF2B		3	AY466471. Q6S4P4.	 Other	Os03g0336200	LOC_Os03g21800.2, LOC_Os03g21800.1				GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0046983 - protein dimerization activity, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8247	RF7	RF7	RESTORATION OF FERTILITY ７				12		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration						GO:0007275 - multicellular organismal development		
8248	RL10	rl10	ROLLED LEAF 10				9		 Vegetative organ - Leaf						GO:0030154 - cell differentiation		
8249	RL7	rl7	ROLLED LEAF 7				5		 Vegetative organ - Leaf						GO:0030154 - cell differentiation		
8250	RL8	rl8	ROLLED LEAF 8				5		 Vegetative organ - Leaf						GO:0030154 - cell differentiation		
8251	RL9	rl9, SLL1/RL9, SLL1	ROLLED LEAF 9	SHALLOT-LIKE1, SHALLOT-LIKE 1, ROLLED LEAF9	GARP PROTEIN	rl9-1, rl9-2, sll1, sll1/rl9, sll1-1, sll1-2	9	FJ268748, FJ268747. Q0J235. a MYB transcription factor of the KANADI family. a SHAQKYF class MYB family transcription factor. TO:0000869: glume anatomy and morphology trait.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Inflorescence,  Seed - Morphological traits,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os09g0395300	LOC_Os09g23200.1				GO:0003682 - chromatin binding, GO:0048316 - seed development, GO:0048364 - root development, GO:0048653 - anther development, GO:0005634 - nucleus, GO:0048366 - leaf development, GO:0012501 - programmed cell death, GO:0009555 - pollen development, GO:0010229 - inflorescence development, GO:0006351 - transcription, DNA-dependent, GO:0010158 - abaxial cell fate specification, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010088 - phloem development, GO:0030154 - cell differentiation, GO:0003677 - DNA binding	TO:0000495 - chlorophyll content, TO:0001006 - adventitious root number, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0000053 - pollen sterility, TO:0000085 - leaf rolling, TO:0000391 - seed size, TO:0000655 - leaf development trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000656 - root development trait, TO:0000653 - seed development trait, TO:0000316 - photosynthetic ability, TO:0000207 - plant height	PO:0001007 - pollen development stage , PO:0007520 - root development stage , PO:0001004 - anther development stage , PO:0001050 - leaf development stage , PO:0006019 - leaf abaxial epidermis , PO:0025426 - phloem development stage , PO:0020104 - leaf sheath , PO:0000293 - guard cell , PO:0001170 - seed development stage 
8252	AGPL2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2	sativa ADP-glucose pyrophosphorylase large subunit 2, ADP-glucose Pyrophosphorylase large subunit 2, AGPase large subunit 2, AGPase large unit 2, ADP-glucose pyrophosphorylase subunit SH2, GRAIN INCOMPLETE FILLING 2	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2	osagpl2, osagpl2-3, osagpl2-1, gif2	1	EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AP004317. PO:0009089; endosperm. U66041. AY028314. U87450. HQ679247-HQ679415 (O. sativa and other wild rice species). U70541 (AAB58473). a homolog of maize sh2 gene. LOC_Os01g44220. GO:2000034: regulation of seed maturation.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0633100	LOC_Os01g44220.7, LOC_Os01g44220.6, LOC_Os01g44220.5, LOC_Os01g44220.4, LOC_Os01g44220.3, LOC_Os01g44220.2, LOC_Os01g44220.1	GR:0101320			GO:0010431 - seed maturation, GO:0019252 - starch biosynthetic process, GO:0016779 - nucleotidyltransferase activity, GO:0048316 - seed development, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0009058 - biosynthetic process, GO:0009536 - plastid, GO:0009651 - response to salt stress, GO:0005829 - cytosol, GO:0005978 - glycogen biosynthetic process, GO:0010581 - regulation of starch biosynthetic process	TO:0006001 - salt tolerance, TO:0000104 - floury endosperm, TO:0000100 - shrunken endosperm, TO:0000653 - seed development trait, TO:0000162 - seed quality, TO:0000396 - grain yield, TO:0000590 - grain weight, TO:0002661 - seed maturation, TO:0000696 - starch content	PO:0009089 - endosperm , PO:0007632 - seed maturation stage , PO:0009001 - fruit , PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
8253	AGPL3	OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3	sativa ADP-glucose pyrophosphorylase large subunit 3, ADP-glucose Pyrophosphorylase large subunit 3, AGPase large subunit 3, AGPase large unit 1, AGPase L1	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3		5	EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AC007858, AP120988. D50317. PO:0009089; endosperm.  OsAGPL1 in Lee et al. 2007, Lu et al. 2012, Yang et al. 2015, Morita et al. 2015, Long et al. 2018, Zhu et al. 2018. LOC_Os05g50380.	 Biochemical character	Os05g0580000	LOC_Os05g50380.2, LOC_Os05g50380.1	GR:0101321			GO:0009536 - plastid, GO:0009058 - biosynthetic process, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0016779 - nucleotidyltransferase activity, GO:0019252 - starch biosynthetic process		PO:0009089 - endosperm 
8254	AGPL4	OsAGPL4, APL4, OsAPL4, OsSTA193	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4	sativa ADP-glucose pyrophosphorylase large subunit 4, ADP-glucose Pyrophosphorylase large subunit 4, AGPase large subunit 4, AGPase large unit 4	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4	osagpl4-1, osagpl4-2, osagpl4-3	7	EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AP003574, AP004382. PO:0009089; endosperm. LOC_Os07g13980. a mature anther-preferentially expressed gene.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0243200	LOC_Os07g13980.1	GR:0101322			GO:0019252 - starch biosynthetic process, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0016779 - nucleotidyltransferase activity, GO:0009536 - plastid, GO:0009058 - biosynthetic process	TO:0000696 - starch content, TO:0000106 - male sterility type	PO:0009089 - endosperm , PO:0009066 - anther 
8255	AGPS1	OsAGPS1, APS1, OsAPS1, AGPsma	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1	sativa ADP-glucose pyrophosphorylase small subunit 1, ADP-glucose Pyrophosphorylase small subunit 1, AGPase small subunit 1, Adenosine diphosphate glucose pyrophosphorylase, adenosine diphosphoglucose pyrophosphorylase, ADP-glucose pyrophosphorylase small unit 1, AGPase S1	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1		9	AP004011, AP004756. AY028315. LOC_Os09g12660. PO:0009089; endosperm. GRO:0007141; C-embryo stage ; GRO:0007137; embryo development. a novel candidate gene for fine-mapped qACE9.	 Biochemical character,  Seed - Physiological traits - Taste	Os09g0298200	LOC_Os09g12660.2, LOC_Os09g12660.1	GR:0101317			GO:0009501 - amyloplast, GO:0019252 - starch biosynthetic process, GO:0016779 - nucleotidyltransferase activity, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0009058 - biosynthetic process, GO:0009536 - plastid	TO:0000266 - chalky endosperm	PO:0009089 - endosperm 
8257	AGPS2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2	"sativa ADP-glucose pyrophosphorylase small subunit 2a, sativa ADP-glucose pyrophosphorylase small subunit 2, ADP-glucose Pyrophosphorylase small subunit 2, AGPase small subunit 2, ADP-glucose
pyrophosphorylase small subunit 2a, ADP-glucose pyrophosphorylase 51kD subunit, ADP-glucose pyrophosphorylase small unit 2, ADP-glucose pyrophosphorylase small subunit 2b"	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2	AGPS2-2, osagps2, osagps2-1	8	"OsAGPS2a: leaf-preferential transcript, OsAGPS2b: seed-specific transcript. \"Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic\", Alpha-D-glucose-1-phosphate adenyl transferase, ADP-glucose pyrophosphorylase, AGPase B, ADP-glucose synthase, Adenosine diphosphate glucose pyrophosphorylase, adenosine diphosphoglucose pyrophosphorylase, AGPS, AGPASE B, \"Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor\". EC=2.7.7.27 P15280. AB550912(AGPS2-2, Milayng23). J04960. M31616. AY427566 (promoter). HQ678741-HQ678909 (O. sativa and other wild rice species). a considerable candidate gene responsible for phenotype of sugary mutant. LOC_Os08g25734."	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os08g0345800	LOC_Os08g25734.2, LOC_Os08g25734.1	GR:0101318			GO:0000003 - reproduction, GO:0009536 - plastid, GO:0019252 - starch biosynthetic process, GO:0009415 - response to water, GO:0009651 - response to salt stress, GO:0009791 - post-embryonic development, GO:0009501 - amyloplast, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0005982 - starch metabolic process, GO:0005978 - glycogen biosynthetic process, GO:0009507 - chloroplast, GO:0005829 - cytosol, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000696 - starch content, TO:0000237 - water stress trait, TO:0002661 - seed maturation, TO:0000100 - shrunken endosperm, TO:0000333 - sugar content	PO:0007022 - seed imbibition stage 
8259	ABI5	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1	ABA INSENSITIVE 5	ABA Insensitive 5, bZIP-type transcription factor ABI5, bZIP transcription factors OsABI5, bZIP transcription factor 10, Abscisic acid insensitive 5	BZIP-TYPE TRANSCRIPTION FACTOR ABI5	abi5-1	1	LOC_Os01g64000. EF199630, EF199631. PO:0020091; male gametophyte ; PO:0009049; inflorescence. GRO:0007047; 02-seedling. AU063505, AU093081.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os01g0859300	LOC_Os01g64000.3, LOC_Os01g64000.2, LOC_Os01g64000.1				GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding, GO:0009738 - abscisic acid mediated signaling, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0010152 - pollen maturation, GO:0009845 - seed germination	TO:0000429 - salt sensitivity, TO:0000053 - pollen sterility, TO:0000420 - fertility related trait, TO:0000615 - abscisic acid sensitivity, TO:0000253 - seed dormancy	PO:0009049 - inflorescence , PO:0020091 - obsolete microgametophyte 
8260	AGO11	OsAGO11	ARGONAUTE 11	Protein argonaute 11	PROTEIN ARGONAUTE 11		3	Q10F39.	 Other	Os03g0682600	LOC_Os03g47830.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8261	AGO12	OsAGO12	ARGONAUTE 12	Protein argonaute 12	PROTEIN ARGONAUTE 12		3	Q7Y001.	 Other	Os03g0682200	LOC_Os03g47820.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8262	AGO13	OsAGO13	ARGONAUTE 13	Protein argonaute 13	PROTEIN ARGONAUTE 13		3	Q852N2.	 Other	Os03g0789500	LOC_Os03g57560.1				GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding		
8263	AGO14	OsAGO14	ARGONAUTE 14	Protein argonaute 14	PROTEIN ARGONAUTE 14		7	Q6Z4F1.	 Other	Os07g0188000	LOC_Os07g09020.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8264	AGO15	OsAGO15	ARGONAUTE 15	Protein argonaute 15	PROTEIN ARGONAUTE 15		1	Q5NBN9.	 Other	Os01g0275200	LOC_Os01g16850.1				GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding		
8265	AGO16	OsAGO16, OsAGO6, ZP1	ARGONAUTE 16	Protein argonaute 16, Protein ZWILLE/PINHEAD-like 1	PROTEIN ARGONAUTE 16		7	Q6YSJ5.	 Other	Os07g0265600	LOC_Os07g16224.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8266	AGO17	OsAGO17	ARGONAUTE 17	Protein argonaute 17	PROTEIN ARGONAUTE 17		2	Q6H6C3.	 Other	Os02g0169400	LOC_Os02g07310.1				GO:0031047 - gene silencing by RNA, GO:0005739 - mitochondrion, GO:0003676 - nucleic acid binding		
8267	AGO18	OsAGO18	ARGONAUTE 18	Protein argonaute 18, Argonaute18	PROTEIN ARGONAUTE 18	ago18	7	Q69UP6.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Disease resistance,  Other	Os07g0471300	LOC_Os07g28850.1				GO:0003676 - nucleic acid binding, GO:0007126 - meiosis, GO:0005739 - mitochondrion, GO:0031047 - gene silencing by RNA, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance	PO:0009066 - anther 
8268	AGO1A	OsAGO1a, AGO1a, AGO10, AGO1-1	ARGONAUTE 1A	Protein argonaute 1A, Argonaute 10	PROTEIN ARGONAUTE 1A	ago10	2	LOC_Os02g45070. Q6EU14. AGO10 in Ma et al. 2017. GO:1902185: positive regulation of shoot apical meristem development. AGO1-1 in Li et al. 2017. a target gene of miR168.	 Vegetative organ - Shoot apical meristem(SAM),  Other	Os02g0672200	LOC_Os02g45070.2, LOC_Os02g45070.1				GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding	TO:0006020 - shoot apical meristem development	
8269	AGO1B	OsAGO1b, AGO1b, AGO1-2	ARGONAUTE 1B	Protein argonaute 1B	PROTEIN ARGONAUTE 1B		4	LOC_Os04g47870. Q7XSA2. AGO1-2 in Li et al. 2017.	 Other	Os04g0566500	LOC_Os04g47870.2, LOC_Os04g47870.1				GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding		
8270	AGO1C	OsAGO1c, OsAGO1, AGO1, AGO1c	ARGONAUTE 1C	Protein argonaute 1C, Protein argonaute 1, argonaute1	PROTEIN ARGONAUTE 1C		2	LOC_Os02g58490. AB081951. Q6K972. targeted by miR168 (Qin et al. 2017).	 Other	Os02g0831600	LOC_Os02g58490.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8271	AGO1D	OsAGO1d, AGO1d	ARGONAUTE 1D	Protein argonaute 1D	PROTEIN ARGONAUTE 1D		6	Q5Z5B2.	 Other	Os06g0729300	LOC_Os06g51310.2, LOC_Os06g51310.1				GO:0031047 - gene silencing by RNA, GO:0005739 - mitochondrion, GO:0003676 - nucleic acid binding		PO:0009066 - anther 
8272	AGO2	OsAGO2	ARGONAUTE 2	sativa Argonaute 2, Protein argonaute 2	PROTEIN ARGONAUTE 2		4	Q7XTS4.	 Other	Os04g0615700	LOC_Os04g52540.1				GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding		
8273	AGO3	OsAGO3	ARGONAUTE 3	Protein argonaute 3	PROTEIN ARGONAUTE 3		4	Q7XTS3.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0615800	LOC_Os04g52550.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
8274	AGO4A	OsAGO4a, AGO4-2	ARGONAUTE 4A	Protein argonaute 4A	PROTEIN ARGONAUTE 4A		1	Q9SDG8. LOC_Os01g16870. AGO4-2 in Li et al. 2017.	 Other	Os01g0275600	LOC_Os01g16870.4, LOC_Os01g16870.3, LOC_Os01g16870.2, LOC_Os01g16870.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA	TO:0002675 - gibberellic acid content, TO:0002676 - brassinosteroid content	
8275	AGO4B	OsAGO4b, AGO4-1	ARGONAUTE 4B	Protein argonaute 4B	PROTEIN ARGONAUTE 4B		4	Q0JF58. AGO4-1 in Li et al. 2017. LOC_Os04g06770.	 Other	Os04g0151800	LOC_Os04g06770.2, LOC_Os04g06770.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA	TO:0002676 - brassinosteroid content, TO:0002675 - gibberellic acid content	
8277	AGPL1	OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1	sativa ADP-glucose pyrophosphorylase large subunit 1, ADP-glucose Pyrophosphorylase large subunit 1, AGPase large subunit 1, ADP-glucose pyrophosphorylase large subunit 3, AGPase large unit 3	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1		3	EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AC096689, AP004382. OsAGPL3 in Lee et al. 2007, Lu et al. 2012 and Wang et al. 2013. LOC_Os03g52460.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os03g0735000	LOC_Os03g52460.1	GR:0101319			GO:0005978 - glycogen biosynthetic process, GO:0009536 - plastid, GO:0009058 - biosynthetic process, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0019252 - starch biosynthetic process, GO:0016779 - nucleotidyltransferase activity		
8278	ALDH7	OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6	ALDEHYDE DEHYDROGENASE 7	Oryza sativa Aldehyde Dehydrogenase 7, Family 7 ALDH, lactic acid dehydrogenase, Aldehyde Dehydrogenase 7B6	ALDEHYDE DEHYDROGENASE 7		9	LOC_Os09g26880. AF323586. lactic acid dehydrogenase (LDH) in Zhang et al. 2013. OsALDH7B6 in Simeon et al. 2010. Antiquitin.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0440300	LOC_Os09g26880.4, LOC_Os09g26880.3, LOC_Os09g26880.1				GO:0009408 - response to heat, GO:0009611 - response to wounding, GO:0009629 - response to gravity, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009635 - response to herbicide	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0002693 - gravity response trait, TO:0000058 - herbicide sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000432 - temperature response trait	
8279	ALYL1	OsALYL1	ALWAYS EARLYLIKE 1	ALWAYS EARLYLIKE1			1	R2R3-MYB.	 Other	Os01g0193900	LOC_Os01g09760.1				GO:0003677 - DNA binding		
8280	ANS	ANS, OsANS1, ANS1, LDOX	ANTHOCYANIDIN SYNTHASE	anthocyanidin synthase, leucoanthocyanidin dioxygenase	ANTHOCYANIDIN SYNTHASE		1	Y07955. LOC_Os01g27490.	 Biochemical character,  Coloration - Anthocyanin,  Coloration - Others,  Seed,  Tolerance and resistance - Stress tolerance	Os01g0372500	LOC_Os01g27490.1				GO:0009416 - response to light stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0050589 - leucocyanidin oxygenase activity, GO:0009718 - anthocyanin biosynthetic process, GO:0007033 - vacuole organization, GO:0010023 - proanthocyanidin biosynthetic process, GO:0005506 - iron ion binding, GO:0009611 - response to wounding, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0009813 - flavonoid biosynthetic process, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	TO:0000075 - light sensitivity, TO:0000168 - abiotic stress trait, TO:0000707 - pericarp color, TO:0000290 - flavonoid content, TO:0000071 - anthocyanin content	
8281	BC10	BC10, bc10, FC116, FC116/BC10, Osbc10, Osfc116	BRITTLE CULM 10	brittle culm 10, fragile culm 116	DUF266-CONTAINING GOLGI-LOCALIZED GLYCOSYLTRANSFERASE	bc10, fc116	5	EF140884. LOC_Os05g07790. a Putative Beta-1,6-N-Acetylglucosaminyltransferase Protein.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os05g0170000	LOC_Os05g07790.1				GO:0008375 - acetylglucosaminyltransferase activity, GO:0016020 - membrane, GO:0009834 - secondary cell wall biogenesis, GO:0009808 - lignin metabolic process, GO:0031225 - anchored to membrane, GO:0045492 - xylan biosynthetic process, GO:0009809 - lignin biosynthetic process, GO:0009531 - secondary cell wall, GO:0005886 - plasma membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000307 - hexose content, TO:0000051 - stem strength, TO:0000731 - lignin content, TO:0006006 - monosaccharide content, TO:0000300 - glucose content	
8282	BC1L1	OsBC1L1	BRITTLE CULM-LIKE 1	(sativa BRITTLE CULM1-like 1)			3		 Vegetative organ - Culm	Os03g0301200	LOC_Os03g18910.1				GO:0016021 - integral to membrane, GO:0010215 - cellulose microfibril organization, GO:0031225 - anchored to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009808 - lignin metabolic process, GO:0009834 - secondary cell wall biogenesis, GO:0009531 - secondary cell wall, GO:0005886 - plasma membrane		
8283	BGAL1	OsBgal1, beta-gal, OsBGal1	BETA-GALACTOSIDASE 1	Beta-galactosidase 5, Lactase 5	BETA-GALACTOSIDASE 1		3	AF499737. AF508799. EC=3.2.1.23 Q10RB4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0165400	LOC_Os03g06940.2, LOC_Os03g06940.1				GO:0043169 - cation binding, GO:0005529 - sugar binding, GO:0048046 - apoplast, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process		
8284	BGAL10	OsBgal10, OsBGal10	BETA-GALACTOSIDASE 10		BETA-GALACTOSIDASE 10		8	Q6ZJJ0.	 Biochemical character	Os08g0549200	LOC_Os08g43570.1				GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0005529 - sugar binding, GO:0030246 - carbohydrate binding, GO:0048046 - apoplast		
8285	BGAL11	OsBgal11, OsBGal11	BETA-GALACTOSIDASE 11	Beta-galactosidase 12, Lactase 12	BETA-GALACTOSIDASE 11		9	EU603286. EC=3.2.1.23 Q0IZZ8.	 Biochemical character	Os09g0539200	LOC_Os09g36810.1				GO:0005529 - sugar binding, GO:0048046 - apoplast, GO:0043169 - cation binding, GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity		
8286	BGAL12	OsBgal12, OsBGal12	BETA-GALACTOSIDASE 12	Beta-galactosidase 13, Lactase 13	BETA-GALACTOSIDASE 12		10	EC=3.2.1.23 Q7G3T8.	 Biochemical character	Os10g0330600	LOC_Os10g18400.1				GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity, GO:0005529 - sugar binding, GO:0005975 - carbohydrate metabolic process, GO:0048046 - apoplast		
8287	BGAL13	OsBgal13, OsBGal13	BETA-GALACTOSIDASE 13	Beta-galactosidase 15, Lactase 15	BETA-GALACTOSIDASE 13		12	EC=3.2.1.23 Q0INM3.	 Biochemical character	Os12g0429200	LOC_Os12g24170.1				GO:0043169 - cation binding, GO:0048046 - apoplast, GO:0004565 - beta-galactosidase activity, GO:0005529 - sugar binding, GO:0005975 - carbohydrate metabolic process		
8288	BGAL14	OsBgal14, OsBGal14, OsEnS-135	BETA-GALACTOSIDASE 14	Beta-galactosidase 14, Lactase 14, endosperm-specific gene 135	BETA-GALACTOSIDASE 14		10	EC=3.2.1.23 Q7XFK2. LOC_Os10g19960.	 Biochemical character	Os10g0340600	LOC_Os10g19960.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005975 - carbohydrate metabolic process, GO:0005529 - sugar binding, GO:0043169 - cation binding, GO:0048046 - apoplast, GO:0004565 - beta-galactosidase activity		
8289	BGAL15	OsBgal15, OsBGal15	BETA-GALACTOSIDASE 15	Beta-galactosidase 13, Lactase 13	BETA-GALACTOSIDASE 15		6	EU051629. EC=3.2.1.23 Q7G3T8.	 Biochemical character	Os06g0628500	LOC_Os06g42310.1				GO:0005529 - sugar binding, GO:0048046 - apoplast, GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity, GO:0043169 - cation binding		
8290	BGAL2	OsBgal2, OsBGal2	BETA-GALACTOSIDASE 2	Beta-galactosidase 9, Lactase 9	BETA-GALACTOSIDASE 2		6	AK102756. EC=3.2.1.23 Q5Z7L0.	 Biochemical character	Os06g0573600	LOC_Os06g37560.1				GO:0004565 - beta-galactosidase activity, GO:0043169 - cation binding, GO:0005975 - carbohydrate metabolic process, GO:0048046 - apoplast		
8291	BGAL3	OsBgal3, OsBGal3	BETA-GALACTOSIDASE 3	Beta-galactosidase 2, Lactase 2	BETA-GALACTOSIDASE 3		1	EC=3.2.1.23 Q8W0A1.	 Biochemical character	Os01g0580200	LOC_Os01g39830.1				GO:0043169 - cation binding, GO:0048046 - apoplast, GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity, GO:0005529 - sugar binding		
8292	BGAL4	OsBgal4, OsBGal4	BETA-GALACTOSIDASE 4	Beta-galactosidase 3, Lactase 3	BETA-GALACTOSIDASE 4		1	EC=3.2.1.23 Q5N8X6.	 Biochemical character	Os01g0875500	LOC_Os01g65460.2, LOC_Os01g65460.1				GO:0048046 - apoplast, GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity, GO:0005529 - sugar binding, GO:0005975 - carbohydrate metabolic process		
8293	BGAL5	OsBgal5, OsBGal5, RMP1	BETA-GALACTOSIDASE 5	Beta-galactosidase 1, Lactase 1, rice microspore-preferred 1	BETA-GALACTOSIDASE 5		1	EC=3.2.1.23 Q8RUV9. LOC_Os01g34920.	 Biochemical character	Os01g0533400	LOC_Os01g34920.1				GO:0005529 - sugar binding, GO:0043169 - cation binding, GO:0005975 - carbohydrate metabolic process, GO:0048046 - apoplast, GO:0004565 - beta-galactosidase activity, GO:0009556 - microsporogenesis		PO:0001007 - pollen development stage 
8294	BGAL6	OsBgal6, OsBGal6	BETA-GALACTOSIDASE 6	Beta-galactosidase 7, Lactase 7	BETA-GALACTOSIDASE 6		5	EU603285, EU602310. EC=3.2.1.23 Q75HQ3.	 Biochemical character	Os05g0428100	LOC_Os05g35360.1				GO:0005529 - sugar binding, GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0048046 - apoplast		
8295	BGAL7	OsBgal7, OsBGal7, CARSR12	BETA-GALACTOSIDASE 7	Beta-galactosidase 4, Lactase 4	BETA-GALACTOSIDASE 7		2	EC=3.2.1.23 Q6Z6K4(japonica), A2X2H7(indica). D29695.	 Biochemical character	Os02g0219200	LOC_Os02g12730.3, LOC_Os02g12730.2, LOC_Os02g12730.1				GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity, GO:0048046 - apoplast, GO:0043169 - cation binding		
8296	BGAL8	OsBgal8, OsBGal8	BETA-GALACTOSIDASE 8	Beta-galactosidase 6, Lactase 6	BETA-GALACTOSIDASE 8		3	EC=3.2.1.23 Q10NX8.	 Biochemical character	Os03g0255100	LOC_Os03g15020.3, LOC_Os03g15020.2, LOC_Os03g15020.1				GO:0048046 - apoplast, GO:0043169 - cation binding, GO:0005529 - sugar binding, GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity		
8297	BGAL9	OsBgal9, OsBGal9	BETA-GALACTOSIDASE 9	Beta-galactosidase 8, Lactase 8	BETA-GALACTOSIDASE 9		5	EC=3.2.1.23 Q0DGD7.	 Biochemical character	Os05g0539400	LOC_Os05g46200.3, LOC_Os05g46200.2, LOC_Os05g46200.1				GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity, GO:0043169 - cation binding, GO:0048046 - apoplast		
8298	CDT1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8	CADMIUM TOLERANT 1	sativa DcCDT1 homologue 1, cation/Ca2+ exchanger 2, cadmium tolerance 1, Na+/Ca2+ Exchanger 8, Sodium/calcium exchanger 8	CDT1	ccx2, ccx2-1, ccx2-2	3	LOC_Os03g45370. tonoplastic calcium exchanger. Oryza barthii: ObarCCX2: OBART03G28130, Oryza brachyantha: ObraCCX2: OB03G35770/OB03G35780, Oryza glaberrima: OglaCCX2: ORGLA03G0260000, Oryza glumipatula: OgluCCX2: OGLUM03G28760, Oryza longistaminata: OlCCX2: OLONG_012097 (only partial length sequence available), Oryza meridionalis: OmCCX2: OMERI03G24770, Oryza nivara: OnCCX2: ONIVA03G29160, Oryza punctata: OpCCX2: OPUNC03G25630, Oryza rufipogon: OrCCX2: ORUFI03G29260. TO:0006059: cadmium content trait.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0656500	LOC_Os03g45370.1				GO:0009737 - response to abscisic acid stimulus, GO:0046686 - response to cadmium ion, GO:0010039 - response to iron ion, GO:0005886 - plasma membrane, GO:0015086 - cadmium ion transmembrane transporter activity, GO:0009411 - response to UV, GO:0010043 - response to zinc ion, GO:0010226 - response to lithium ion, GO:0032025 - response to cobalt ion, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0051592 - response to calcium ion, GO:0010038 - response to metal ion	TO:0000351 - zinc sensitivity, TO:0000160 - UV light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000224 - iron sensitivity, TO:0000276 - drought tolerance, TO:0000006 - calcium sensitivity, TO:0006001 - salt tolerance	PO:0009015 - portion of vascular tissue , PO:0020141 - stem node , PO:0005352 - xylem 
8299	CDT2	OsCDT2	CADMIUM TOLERANT 2	sativa DcCDT1 homologue 2, cadmium tolerance 2	CDT2		6		 Tolerance and resistance - Stress tolerance	Os06g0143100	LOC_Os06g05120.2, LOC_Os06g05120.1				GO:0046686 - response to cadmium ion		
8300	CDT3	OsCDT3	CADMIUM TOLERANT 3	sativa DcCDT1 homologue 3, cadmium tolerance 3	CDT3		1	GO:0071585:detoxification of cadmium ion. AB787528.	 Tolerance and resistance - Stress tolerance	Os01g0178300	LOC_Os01g08300.1				GO:0010044 - response to aluminum ion, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion	TO:0000354 - aluminum sensitivity	PO:0009005 - root 
8301	CDT4	OsCDT4	CADMIUM TOLERANT 4	sativa DcCDT1 homologue 4, cadmium tolerance 4	CDT4		2		 Tolerance and resistance - Stress tolerance	Os02g0208500	LOC_Os02g11770.1				GO:0010044 - response to aluminum ion, GO:0046686 - response to cadmium ion	TO:0000354 - aluminum sensitivity	
8302	CDT5	OsCDT5	CADMIUM TOLERANT 5	sativa DcCDT1 homologue 5, cadmium tolerance 5	CDT5		5		 Tolerance and resistance - Stress tolerance	Os05g0178300	LOC_Os05g08554.1				GO:0046686 - response to cadmium ion		
8304	DCL1A	OsDCL1a	DICER-LIKE 1A		DICER-LIKE PROTEIN 1A		3		 Biochemical character						GO:0003725 - double-stranded RNA binding, GO:0030145 - manganese ion binding, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0006396 - RNA processing, GO:0000287 - magnesium ion binding, GO:0008026 - ATP-dependent helicase activity, GO:0031047 - gene silencing by RNA, GO:0004525 - ribonuclease III activity		
8305	DCL1B	OsDCL1b	DICER-LIKE 1B		DICER-LIKE PROTEIN 1B		6		 Biochemical character						GO:0003725 - double-stranded RNA binding, GO:0030145 - manganese ion binding, GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding, GO:0006396 - RNA processing, GO:0005634 - nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0031047 - gene silencing by RNA, GO:0004525 - ribonuclease III activity		
8306	DCL1C	OsDCL1c	DICER-LIKE 1C		DICER-LIKE PROTEIN 1C		5		 Biochemical character						GO:0005524 - ATP binding, GO:0006396 - RNA processing, GO:0030145 - manganese ion binding, GO:0003725 - double-stranded RNA binding, GO:0000287 - magnesium ion binding, GO:0004525 - ribonuclease III activity, GO:0008026 - ATP-dependent helicase activity, GO:0031047 - gene silencing by RNA, GO:0005634 - nucleus		
8307	DCL2A	OsDCL2a, OsDCL2	DICER-LIKE 2A	Endoribonuclease Dicer homolog 2a, Dicer-like protein 2a	DICER-LIKE PROTEIN 2A		3	EC=3.1.26.- Q10HL3. LOC_Os03g38740.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0583900	LOC_Os03g38740.1				GO:0004525 - ribonuclease III activity, GO:0006396 - RNA processing, GO:0008026 - ATP-dependent helicase activity, GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding, GO:0003725 - double-stranded RNA binding, GO:0050832 - defense response to fungus, GO:0031047 - gene silencing by RNA, GO:0030145 - manganese ion binding, GO:0005634 - nucleus	TO:0000074 - blast disease	
8308	DCL2B	OsDCL2b	DICER-LIKE 2B	Endoribonuclease Dicer homolog 2b, Dicer-like protein 2b	DICER-LIKE PROTEIN 2B		9	EC=3.1.26.- Q69LX2.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0315100	LOC_Os09g14610.3, LOC_Os09g14610.2, LOC_Os09g14610.1				GO:0030145 - manganese ion binding, GO:0003725 - double-stranded RNA binding, GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0004525 - ribonuclease III activity, GO:0031047 - gene silencing by RNA, GO:0006396 - RNA processing, GO:0008026 - ATP-dependent helicase activity	TO:0000074 - blast disease	
8309	DCL3A	OsDCL3a	DICER-LIKE 3A	Endoribonuclease Dicer homolog 3a, Dicer-like protein 3a	DICER-LIKE PROTEIN 3A		1	EC=3.1.26.- Q5N870. LOC_Os01g68120.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Inflorescence,  Tolerance and resistance - Disease resistance	Os01g0909200	LOC_Os01g68120.1				GO:0005524 - ATP binding, GO:0000287 - magnesium ion binding, GO:0003677 - DNA binding, GO:0031047 - gene silencing by RNA, GO:0005634 - nucleus, GO:0004525 - ribonuclease III activity, GO:0004386 - helicase activity, GO:0050832 - defense response to fungus, GO:0003723 - RNA binding, GO:0006396 - RNA processing, GO:0030145 - manganese ion binding	TO:0000557 - secondary branch number, TO:0000124 - flag leaf angle, TO:0000074 - blast disease, TO:0000207 - plant height	
8310	DCL3B	OsDCL3b	DICER-LIKE 3B	Endoribonuclease Dicer homolog 3b, Dicer-like protein 3b	DICER-LIKE PROTEIN 3B		10	Q7XD96. GO:1902893: regulation of pri-miRNA transcription by RNA polymerase II.	 Biochemical character,  Seed - Physiological traits,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os10g0485600	LOC_Os10g34430.1				GO:0000380 - alternative nuclear mRNA splicing, via spliceosome, GO:0031047 - gene silencing by RNA, GO:0000287 - magnesium ion binding, GO:0003725 - double-stranded RNA binding, GO:0004525 - ribonuclease III activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006396 - RNA processing, GO:0008026 - ATP-dependent helicase activity, GO:0009536 - plastid, GO:0030145 - manganese ion binding	TO:0000396 - grain yield, TO:0000162 - seed quality, TO:0000421 - pollen fertility, TO:0000180 - spikelet fertility, TO:0000455 - seed set percent, TO:0000598 - protein content, TO:0002673 - amino acid content	
8312	DMAS1	OsDMAS1	DEOXYMUGINEIC ACID SYNTHASE 1	sativa deoxymugineic acid synthase1, Deoxymugineic acid synthase1, Deoxymugineic acid synthase 1, deoxymugineic acid synthase1	DEOXYMUGINEIC ACID SYNTHASE 1		3	AB269906. AU173810. PO:0020124; root stele ; PO:0006203; pericycle ; PO:0000258; root cortex ; PO:0006036; root epidermis ; PO:0005417; phloem ; PO:0005772; exodermis ; PO:0000071; companion cell ; PO:0005020; vascular bundle ; PO:0005421; parenchyma ; PO:0009005; root. TO:0006049: iron concentration. TO:0006053: zinc concentration.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0237100	LOC_Os03g13390.2	GR:0080053			GO:0010106 - cellular response to iron ion starvation, GO:0006826 - iron ion transport, GO:0016491 - oxidoreductase activity	TO:0000224 - iron sensitivity	PO:0000071 - companion cell , PO:0000258 - root cortex , PO:0005020 - vascular bundle , PO:0005417 - phloem , PO:0005421 - parenchyma , PO:0005772 - exodermis , PO:0006036 - root epidermis , PO:0006203 - pericycle , PO:0009005 - root , PO:0020124 - root stele 
8314	F3'H	OsF3'H, OsCYP75B3, CYP75B3	FLAVONOID 3'-HYDROXYLASE	sativa flavonoid 3'-hydroxylase, Flavanone 3'-hydroxylase, P-450 75B3, Cytochrome P450 75B3	FLAVONOID 3'-HYDROXYLASE		10	LOC_Os10g17260. 	 Biochemical character,  Coloration - Anthocyanin	Os10g0320100	LOC_Os10g17260.1				GO:0009718 - anthocyanin biosynthetic process, GO:0045486 - naringenin 3-dioxygenase activity, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
8315	FDH	OsFDH, FDH 1	FORMATE DEHYDROGENASE	Formate dehydrogenase 1, mitochondrial, NAD-dependent formate dehydrogenase 1, Nad-dependent formate dehydrogenase	FORMATE DEHYDROGENASE		6	AB019533. D23770. EC=1.2.1.2 Q9SXP2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0486800	LOC_Os06g29180.1				GO:0055114 - oxidation reduction, GO:0005739 - mitochondrion, GO:0008863 - formate dehydrogenase activity, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0051287 - NAD or NADH binding, GO:0034224 - cellular response to zinc ion starvation, GO:0010106 - cellular response to iron ion starvation, GO:0019509 - methionine salvage	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
8316	FER1	OsFER1, OsFer1	FERRITIN 1	Ferritin 1, Ferritin	FERRITIN 1		11	AF519570.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0106700	LOC_Os11g01530.2, LOC_Os11g01530.1				GO:0009908 - flower development, GO:0070288 - ferritin complex, GO:0015979 - photosynthesis, GO:0006826 - iron ion transport, GO:0042542 - response to hydrogen peroxide, GO:0009941 - chloroplast envelope, GO:0009737 - response to abscisic acid stimulus, GO:0009570 - chloroplast stroma, GO:0005739 - mitochondrion, GO:0006879 - cellular iron ion homeostasis, GO:0009409 - response to cold, GO:0009535 - chloroplast thylakoid membrane, GO:0010043 - response to zinc ion, GO:0048366 - leaf development, GO:0009617 - response to bacterium, GO:0008199 - ferric iron binding, GO:0016491 - oxidoreductase activity, GO:0010039 - response to iron ion		
8317	FER2	OsFER2, OsFer2	FERRITIN 2		FERRITIN 2		12	LOC_Os12g01530. AF519571. D49189, AU082276.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0106000	LOC_Os12g01530.3, LOC_Os12g01530.2, LOC_Os12g01530.1				GO:0010039 - response to iron ion, GO:0015979 - photosynthesis, GO:0046688 - response to copper ion, GO:0009570 - chloroplast stroma, GO:0070288 - ferritin complex, GO:0009535 - chloroplast thylakoid membrane, GO:0005739 - mitochondrion, GO:0009941 - chloroplast envelope, GO:0006879 - cellular iron ion homeostasis, GO:0009908 - flower development, GO:0006826 - iron ion transport, GO:0008199 - ferric iron binding, GO:0048366 - leaf development, GO:0009737 - response to abscisic acid stimulus, GO:0009617 - response to bacterium, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0016491 - oxidoreductase activity, GO:0010043 - response to zinc ion	TO:0000432 - temperature response trait, TO:0000021 - copper sensitivity	
8318	IPD3	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS	INTERACTING PROTEIN OF DMI 3	sativa DMI3 interacting protein, sativa interacting protein of DMI3, DMI3 interacting protein IPD3	INTERACTING PROTEIN OF DMI 3	cyclops	6	EF569223.	 Biochemical character,  Other	Os06g0115600	LOC_Os06g02520.1				GO:0004683 - calmodulin-dependent protein kinase activity, GO:0009620 - response to fungus, GO:0005634 - nucleus, GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8319	LOX1	OsLOX1, OsLOX5	LIPOXYGENASE 1	lipoxygenase 1, Probable lipoxygenase 4, lipoxygenase 5	LIPOXYGENASE 1		3	dual positional specificity lipoxygenase.  DQ389164. EC=1.13.11.12 Q53RB0. FJ660625, FJ660626, AP008209 (27906867-27913264). OsLOX5 in Marla and Singh 2012.	 Biochemical character	Os03g0700700	LOC_Os03g49380.3, LOC_Os03g49380.2, LOC_Os03g49380.1				GO:0005506 - iron ion binding, GO:0016165 - lipoxygenase activity, GO:0031408 - oxylipin biosynthetic process, GO:0055114 - oxidation reduction		
8320	LSI6	Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2	LOW SILICON RICE 6	Low silicon rice 6, Aquaporin NIP2-2, NOD26-like intrinsic protein 2-2	NOD26-LIKE MEMBRANE INTEGRAL PROTEIN		6	LOC_Os06g12310. AB253627, AC003569, Q67WJ8. a passive Si channel (Lsi1-like) gene. GO:1901684: arsenate ion transmembrane transport.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os06g0228200	LOC_Os06g12310.1				GO:0055085 - transmembrane transport, GO:0051207 - silicic acid transport, GO:0046685 - response to arsenic, GO:0032523 - silicon efflux transmembrane transporter activity, GO:0015104 - antimonite transmembrane transporter activity, GO:0016020 - membrane, GO:0005215 - transporter activity, GO:0016021 - integral to membrane		PO:0020141 - stem node 
8321	NAAT	OsNAAT	NICOTINAMINE AMINOTRANSFERASE	Nicotianamine aminotransferase	NICOTINAMINE AMINOTRANSFERASE				 Biochemical character						GO:0033855 - nicotianamine aminotransferase activity, GO:0006826 - iron ion transport, GO:0055065 - metal ion homeostasis		
8322	NAAT1	OsNAAT1	NICOTINAMINE AMINOTRANSFERASE 1	sativa nicotianamine aminotransferase 1, nicotianamine aminotransferase	NICOTINAMINE AMINOTRANSFERASE 1		2	LOC_Os02g20360. AB206814. D25143, AU173091. 	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0306401	LOC_Os02g20360.2, LOC_Os02g20360.1	GR:0080046			GO:0009739 - response to gibberellin stimulus, GO:0009536 - plastid, GO:0006519 - cellular amino acid and derivative metabolic process, GO:0046394 - carboxylic acid biosynthetic process, GO:0034224 - cellular response to zinc ion starvation, GO:0010106 - cellular response to iron ion starvation, GO:0008652 - cellular amino acid biosynthetic process, GO:0008483 - transaminase activity, GO:0033855 - nicotianamine aminotransferase activity, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0009058 - biosynthetic process, GO:0046688 - response to copper ion, GO:0006826 - iron ion transport	TO:0000166 - gibberellic acid sensitivity, TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	PO:0000071 - companion cell , PO:0000258 - root cortex , PO:0000272 - protoxylem , PO:0005772 - exodermis , PO:0020124 - root stele , PO:0006036 - root epidermis , PO:0006203 - pericycle , PO:0009005 - root , PO:0009006 - shoot system , PO:0009010 - seed 
8323	NAAT2	OsNAAT2	NICOTINAMINE AMINOTRANSFERASE 2	sativa nicotianamine aminotransferase 2	NICOTINAMINE AMINOTRANSFERASE 2		2	AK060537	 Biochemical character	Os02g0302700	LOC_Os02g19970.2, LOC_Os02g19970.1				GO:0033855 - nicotianamine aminotransferase activity, GO:0006826 - iron ion transport, GO:0055065 - metal ion homeostasis		
8324	NAAT3	OsNAAT3	NICOTINAMINE AMINOTRANSFERASE 3	sativa nicotianamine aminotransferase 3	NICOTINAMINE AMINOTRANSFERASE 3		2	Os02g0302400 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character						GO:0055065 - metal ion homeostasis, GO:0006826 - iron ion transport, GO:0033855 - nicotianamine aminotransferase activity		
8325	NAAT4	OsNAAT4, OsNAAT1	NICOTINAMINE AMINOTRANSFERASE 4	sativa nicotianamine aminotransferase 4	NICOTINAMINE AMINOTRANSFERASE 4		6	OsNAAT1 in Suzuki et al. 2012.	 Biochemical character	Os06g0345200	LOC_Os06g23684.2, LOC_Os06g23684.1				GO:0055065 - metal ion homeostasis, GO:0006826 - iron ion transport, GO:0033855 - nicotianamine aminotransferase activity		
8326	NAAT5	OsNAAT5	NICOTINAMINE AMINOTRANSFERASE 5	sativa nicotianamine aminotransferase 5	NICOTINAMINE AMINOTRANSFERASE 5		11	Os11g0552000	 Biochemical character	Os11g0552000	LOC_Os11g35040.1				GO:0055065 - metal ion homeostasis, GO:0006826 - iron ion transport, GO:0033855 - nicotianamine aminotransferase activity		
8327	NAAT6	OsNAAT6	NICOTINAMINE AMINOTRANSFERASE 6	sativa nicotianamine aminotransferase 6	NICOTINAMINE AMINOTRANSFERASE 6			AK060557	 Biochemical character						GO:0033855 - nicotianamine aminotransferase activity, GO:0006826 - iron ion transport, GO:0055065 - metal ion homeostasis		
8328	NRAMP4	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 4	BACTERIOCIDE EFFECT 4, Nramp aluminum transporter 1, Functioning in Cesium Over-transport 5	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 4	NRAT1.1, NRAT1.2, NRAT1.3	2	Q6ZG85. OsNRAT1 in Li et al. 2014. GO:1904880: response to hydrogen sulfide.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0131800	LOC_Os02g03900.1				GO:0030001 - metal ion transport, GO:0016021 - integral to membrane, GO:0015083 - aluminum ion transmembrane transporter activity, GO:0010044 - response to aluminum ion, GO:0005886 - plasma membrane	TO:0000354 - aluminum sensitivity	PO:0025034 - leaf 
8329	NRAMP5	OsNRAMP5, OsNramp5	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5	BACTERIOCIDE EFFECT 5	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5	osnramp5, osnramp5-1, lcd-kmt1, osnramp5-2, lcd-kmt2, osnramp5-3, lcdkmt3, nramp5	7	LOC_Os07g15370. Q8H4H5. AB690551, AB690552, AB690553. AB698459. TO:0006059: cadmium concentration. TO:0006048: manganese concentration.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0257200	LOC_Os07g15370.2, LOC_Os07g15370.1				GO:0055072 - iron ion homeostasis, GO:0006811 - ion transport, GO:0015691 - cadmium ion transport, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0006828 - manganese ion transport, GO:0046686 - response to cadmium ion		
8330	NRAMP6	OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6	BACTERIOCIDE EFFECT 6, Natural resistance-associated macrophage protein 6	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6	nramp6	1	Q5QN13. LOC_Os01g31870. l-Nramp6 (full-length, LOC_Os01g31870.1), s-Nramp6 (shortest, LOC_Os01g31870.8). GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0503400	LOC_Os01g31870.1, LOC_Os01g31870.2, LOC_Os01g31870.3, LOC_Os01g31870.4, LOC_Os01g31870.5, LOC_Os01g31870.6, LOC_Os01g31870.7, LOC_Os01g31870.8				GO:0009814 - defense response, incompatible interaction, GO:0030001 - metal ion transport, GO:0005215 - transporter activity, GO:0009414 - response to water deprivation, GO:0006811 - ion transport, GO:0006828 - manganese ion transport, GO:0006826 - iron ion transport, GO:0005886 - plasma membrane, GO:0031348 - negative regulation of defense response, GO:0055072 - iron ion homeostasis, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0051707 - response to other organism	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000112 - disease resistance	
8331	NRAMP7	OsNRAMP7	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 7	BACTERIOCIDE EFFECT 7	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 7		12	Q2QN30.	 Biochemical character	Os12g0581600	LOC_Os12g39180.1				GO:0030001 - metal ion transport, GO:0005215 - transporter activity, GO:0016021 - integral to membrane, GO:0006811 - ion transport		
8335	HB4	OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3	HOMEODOMAIN CONTAINING PROTEIN 4	Homeobox-leucine zipper protein HOX32, Homeodomain transcription factor HOX32, HD-ZIP protein HOX32, rice homeobox gene 32	HOMEODOMAIN CONTAINING PROTEIN 4		3	LOC_Os03g43930. A2XK30(indica), Q6AST1(japonica). EF555551. closely related to Arabidopsis PHB. orthologous to both Arabidopsis PHB and PHV. GO:2000024: regulation of leaf development. TO:0006064: rolled leaf. TO:0006059: cadmium content trait. a major target of miR166.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0640800	LOC_Os03g43930.2, LOC_Os03g43930.1				GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0009416 - response to light stimulus, GO:0046686 - response to cadmium ion, GO:0048366 - leaf development, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0001015 - photosynthetic rate, TO:0000207 - plant height, TO:0000655 - leaf development trait, TO:0000085 - leaf rolling, TO:0000276 - drought tolerance, TO:0000495 - chlorophyll content, TO:0000163 - auxin sensitivity, TO:0000370 - leaf width, TO:0000206 - leaf angle, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000075 - light sensitivity, TO:0001017 - water use efficiency	PO:0001050 - leaf development stage 
8337	PDR20	OsPDR20	PLEIOTROPIC DRUG RESISTANCE 20	sativa pleiotropic drug resistance 20	PLEIOTROPIC DRUG RESISTANCE 20				 Biochemical character						GO:0006810 - transport, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
8339	PDR6	OsPDR6, OsABCG31, OsABCG31_1	PLEIOTROPIC DRUG RESISTANCE 6	sativa pleiotropic drug resistance 6, Pleiotropic drug resistance protein 6, ABC transporter superfamily ABCG subgroup member 31, ATP-binding Cassette Transporter G31	PLEIOTROPIC DRUG RESISTANCE PROTEIN 6	osabcg31.b, osabcg31.c, osabcg31	1	Q8GU87. AJ535049. The rice ortholog of the barley Eibi1.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0177900	LOC_Os01g08260.2, LOC_Os01g08260.1				GO:0016020 - membrane, GO:0016887 - ATPase activity, GO:0016021 - integral to membrane, GO:0010143 - cutin biosynthetic process, GO:0006810 - transport, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0042335 - cuticle development	TO:0000074 - blast disease, TO:0000207 - plant height	
8340	PDR8	OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4	PLEIOTROPIC DRUG RESISTANCE 8	sativa pleiotropic drug resistance 8, Pleiotropic drug resistance protein 4, ABC transporter superfamily ABCG subgroup member 37, pleiotropic drug resistance 4	PLEIOTROPIC DRUG RESISTANCE PROTEIN 8		1	Q8GU89. AJ535047. BK001018. BI810084, AU065437, AU065360, AU101680, BM418923, AU167015, BM420554, BI810496.	 Biochemical character	Os01g0609900	LOC_Os01g42410.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006810 - transport		
8341	PDR9	OsPDR9, ospdr9, OsPDR3, PDR3	PLEIOTROPIC DRUG RESISTANCE 9	pleiotropic drug resistance 9, PDR-type ABC transporter 9, sativa pleiotropic drug resistance 3, pleiotropic drug resistance 3, Pleiotropic drug resistance protein 3	PLEIOTROPIC DRUG RESISTANCE 9		1	AY271618, AJ535046. BK001017. D22472, BM421151, AF093586. BF889480. A2WSH0(indica). Q0JLC5(japonica).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0609300	LOC_Os01g42380.1				GO:0016020 - membrane, GO:0016887 - ATPase activity, GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
8342	RDR1	OsRDR1	RNA-DEPENDENT RNA POLYMERASE 1	RNA-dependent RNA polymerase 1, Probable RNA-dependent RNA polymerase 1	RNA-DEPENDENT RNA POLYMERASE 1		2	EC=2.7.7.48 Q0DXS3. LOC_Os02g50330.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0736200	LOC_Os02g50330.1				GO:0003968 - RNA-directed RNA polymerase activity, GO:0051607 - defense response to virus, GO:0003723 - RNA binding, GO:0031047 - gene silencing by RNA	TO:0000148 - viral disease resistance	
8343	RDR2	OsRDR2	RNA-DEPENDENT RNA POLYMERASE 2	RNA-dependent RNA polymerase 2, Probable RNA-dependent RNA polymerase 2	RNA-DEPENDENT RNA POLYMERASE 2	rdr2-2	4	LOC_Os04g39160. EC=2.7.7.48 Q7XM31. targeted by osa-miR818 (Qin et al. 2017).	 Biochemical character	Os04g0465700	LOC_Os04g39160.1				GO:0031047 - gene silencing by RNA, GO:0003968 - RNA-directed RNA polymerase activity, GO:0003723 - RNA binding	TO:0002675 - gibberellic acid content, TO:0002676 - brassinosteroid content	
8344	RDR3	OsRDR3, OsRDR3a	RNA-DEPENDENT RNA POLYMERASE 3	RNA-dependent RNA polymerase 3, Probable RNA-dependent RNA polymerase 3	RNA-DEPENDENT RNA POLYMERASE 3		1	EC=2.7.7.48 Q5QMN5. OsRDR3a in Yang et al 2007, Zong et al. 2009 and Jiang et al. 2011. 	 Biochemical character	Os01g0197900	LOC_Os01g10130.1				GO:0003723 - RNA binding, GO:0031047 - gene silencing by RNA, GO:0009737 - response to abscisic acid stimulus, GO:0003968 - RNA-directed RNA polymerase activity	TO:0000615 - abscisic acid sensitivity	
8345	RDR4	OsRDR4, OsRDR3b	RNA-DEPENDENT RNA POLYMERASE 4	RNA-dependent RNA polymerase 4, Probable RNA-dependent RNA polymerase 4	RNA-DEPENDENT RNA POLYMERASE 4		1	EC=2.7.7.48 Q5QMN4. OsRDR3b in Zong et al. 2009 and Jiang et al. 2011.	 Biochemical character	Os01g0198000	LOC_Os01g10140.3, LOC_Os01g10140.2				GO:0003723 - RNA binding, GO:0031047 - gene silencing by RNA, GO:0003968 - RNA-directed RNA polymerase activity		
8347	TRBF1	OsTRBF1	TELOMERE REPEAT-BINDING FACTOR 1	sativa telomere repeat-binding factor 1	TELOMERE REPEAT-BINDING FACTOR 1				 Biochemical character						GO:0042162 - telomeric DNA binding		
8348	TRBF2	OsTRBF2	TELOMERE REPEAT-BINDING FACTOR 2	sativa telomere repeat-binding factor 2	TELOMERE REPEAT-BINDING FACTOR 2				 Biochemical character						GO:0042162 - telomeric DNA binding		
8349	TRBF3	OsTRBF3	TELOMERE REPEAT-BINDING FACTOR 3	sativa telomere repeat-binding factor 3	TELOMERE REPEAT-BINDING FACTOR 3				 Biochemical character						GO:0042162 - telomeric DNA binding		
8350	YSL1	OsYSL1, OsYs1	YELLOW STRIP-LIKE GENE 1	rice YSL (yellow stripe-like) gene 1, Probable metal-nicotianamine transporter YSL1, Protein YELLOW STRIPE LIKE 1, yellow stripe 1-like transporter 1	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL1		1	Q9FTU1. AB190912. AU108928. TO:0006049: iron concentration. TO:0006053: zinc concentration.	 Biochemical character	Os01g0238700	LOC_Os01g13710.1				GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0055085 - transmembrane transport		
8351	YSL10	OsYSL10	YELLOW STRIP-LIKE GENE 10	rice YSL (yellow stripe-like) gene 10, Probable metal-nicotianamine transporter YSL10, Protein YELLOW STRIPE LIKE 10, yellow stripe 1-like transporter 10	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL10		4	Q0J932. AB190920.	 Biochemical character	Os04g0674600	LOC_Os04g57840.1				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8352	YSL11	OsYSL11	YELLOW STRIP-LIKE GENE 11	rice YSL (yellow stripe-like) gene 11, Probable metal-nicotianamine transporter YSL11, Protein YELLOW STRIPE LIKE 11, yellow stripe 1-like transporter 11	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL11		4	Q7X660. AB190921.	 Biochemical character	Os04g0524900	LOC_Os04g44330.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0016020 - membrane		
8353	YSL12	OsYSL12, OsYs11	YELLOW STRIP-LIKE GENE 12	rice YSL (yellow stripe-like) gene 12, Probable metal-nicotianamine transporter YSL12, Protein YELLOW STRIPE LIKE 12, yellow stripe 1-like transporter 12	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL12		4	AB190922. Q5JQD7. AU068199, AU068198, AU068880.	 Biochemical character	Os04g0524600	LOC_Os04g44320.1				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8354	YSL13	OsYSL13, OsYs12	YELLOW STRIP-LIKE GENE 13	rice YSL (yellow stripe-like) gene 13, Probable metal-nicotianamine transporter YSL13, Protein YELLOW STRIPE LIKE 13, yellow stripe 1-like transporter 13	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL13		4	AB164644. Q7XKF4. AU181651, BM421051, BI812310.	 Biochemical character	Os04g0524500	LOC_Os04g44300.2, LOC_Os04g44300.1				GO:0009751 - response to salicylic acid stimulus, GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8355	YSL14	OsYSL14, OsYs5	YELLOW STRIP-LIKE GENE 14	rice YSL (yellow stripe-like) gene 14, Probable metal-nicotianamine transporter YSL14, Protein YELLOW STRIPE LIKE 14, yellow stripe 1-like transporter 14	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL14		2	Q6H7J6. AB164645. C91598, D24925, AU064354, AU165061, AU064343, AU064290, AU031949, D21962.	 Biochemical character	Os02g0633300	LOC_Os02g42220.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane		
8356	YSL15	OsYSL15, OsYs7	YELLOW STRIP-LIKE GENE 15	rice YSL (yellow stripe-like) gene 15, Iron-phytosiderophore transporter YSL15, Protein YELLOW STRIPE LIKE 15, ferric Fe-DMA transporter OsYSL15, yellow stripe 1-like transporter 15	IRON-PHYTOSIDEROPHORE TRANSPORTER YSL15		2	IRON-REGULATED IRON(III)-DEOXYMUGINEIC ACID TRANSPORTER. Q6H3Z3. AB190923. D24682. AU031880, AU082716, AU184448, AU032408, D24664. TO:0006049: iron concentration. TO:0006053: zinc concentration. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0650300	LOC_Os02g43410.2, LOC_Os02g43410.1				GO:0010106 - cellular response to iron ion starvation, GO:0009739 - response to gibberellin stimulus, GO:0006865 - amino acid transport, GO:0046942 - carboxylic acid transport, GO:0034224 - cellular response to zinc ion starvation, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0010039 - response to iron ion, GO:0005886 - plasma membrane, GO:0005506 - iron ion binding, GO:0006826 - iron ion transport	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity	
8357	YSL16	OsYSL16, Os-YSL16, OsYs14	YELLOW STRIP-LIKE GENE 16	rice YSL (yellow stripe-like) gene 16, Probable metal-nicotianamine transporter YSL16, Protein YELLOW STRIPE LIKE 16, yellow stripe 1-like transporter 16, Yellow stripe-like16, Yellow Stripe1-Like 16	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL16	osysl16-1	4	AB190924. Q7XN54. AB673450. AU082725, AU082724.	 Biochemical character	Os04g0542800	LOC_Os04g45900.1				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8358	YSL17	OsYSL17, OsYs18	YELLOW STRIP-LIKE GENE 17	rice YSL (yellow stripe-like) gene 17, Probable metal-nicotianamine transporter YSL17, Protein YELLOW STRIPE LIKE 17, yellow stripe 1-like transporter 17	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL17		8	AB190925. Q6ZCX1.	 Biochemical character	Os08g0280300	LOC_Os08g17830.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8359	YSL18	OsYSL18, OsYs2	YELLOW STRIP-LIKE GENE 18	rice YSL (yellow stripe-like) gene 18, Probable metal-nicotianamine transporter YSL18, Protein YELLOW STRIPE LIKE 18, yellow stripe 1-like transporter 18	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL18		1	AB190926. Q941V3.	 Biochemical character	Os01g0829900	LOC_Os01g61390.1				GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane		
8360	YSL19	OsYSL19	YELLOW STRIP-LIKE GENE 19	rice YSL (yellow stripe-like) gene 19	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL19			AK110665	 Biochemical character						GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0016020 - membrane		
8361	YSL3	OsYSL3, OsYs16	YELLOW STRIP-LIKE GENE 3	rice YSL (yellow stripe-like) gene 3, Probable metal-nicotianamine transporter YSL3, Protein YELLOW STRIPE LIKE 3, yellow stripe 1-like transporter 3	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL3		5	Q6AVD0. AB190913.	 Biochemical character	Os05g0251900	LOC_Os05g16280.1				GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8362	YSL4	OsYSL4, OsYs17	YELLOW STRIP-LIKE GENE 4	rice YSL (yellow stripe-like) gene 4, Probable metal-nicotianamine transporter YSL4, Protein YELLOW STRIPE LIKE 4, yellow stripe 1-like transporter 4	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL4		5	Q688S6. AB190914.	 Biochemical character	Os05g0252000	LOC_Os05g16290.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0016021 - integral to membrane		
8363	YSL5	OsYSL5, OsYs9	YELLOW STRIP-LIKE GENE 5	rice YSL (yellow stripe-like) gene 5, Probable metal-nicotianamine transporter YSL5, Protein YELLOW STRIPE LIKE 5, yellow stripe 1-like transporter 5	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL5		4	AB190915. Q7XRV1.	 Biochemical character	Os04g0390600	LOC_Os04g32060.2, LOC_Os04g32060.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane		
8364	YSL6	OsYSL6, OsYs8	YELLOW STRIP-LIKE GENE 6	rice YSL (yellow stripe-like) gene 6, Probable metal-nicotianamine transporter YSL6, Protein YELLOW STRIPE LIKE 6, yellow stripe 1-like transporter 6	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL6		4	AB190916. AB673449. Q7XRV2. AU032502, BI118727, BI809647, BM419938, BI810349.	 Biochemical character	Os04g0390500	LOC_Os04g32050.2, LOC_Os04g32050.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane		
8365	YSL7	OsYSL7, OsYs4	YELLOW STRIP-LIKE GENE 7	rice YSL (yellow stripe-like) gene 7, Probable metal-nicotianamine transporter YSL7, Protein YELLOW STRIPE LIKE 7, yellow stripe 1-like transporter 7	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL7		2	AB190917. Q6ZGM7. AU182396, AU183814, C98607, C98536, BE230224, C98608, AU183815, C72032, C72649, C98535, AU165407, C98740, AU182428, C98741, BE230485.	 Biochemical character	Os02g0116300	LOC_Os02g02450.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8366	YSL8	OsYSL8, OsYs3	YELLOW STRIP-LIKE GENE 8	rice YSL (yellow stripe-like) gene 8, Probable metal-nicotianamine transporter YSL8, Protein YELLOW STRIPE LIKE 8, yellow stripe 1-like transporter 8	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL8		2	AB190918. Q0E4J6.	 Biochemical character	Os02g0116400	LOC_Os02g02460.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0016021 - integral to membrane		
8367	YSL9	OsYSL9, OsYs13	YELLOW STRIP-LIKE GENE 9	rice YSL (yellow stripe-like) gene 9, Probable metal-nicotianamine transporter YSL9, Protein YELLOW STRIPE LIKE 9, yellow stripe 1-like transporter 9	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL9		4	Q7XUJ2. AB190919. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0542200	LOC_Os04g45860.1				GO:0016020 - membrane, GO:0034755 - iron ion transmembrane transport, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0051980 - iron-nicotianamine transmembrane transporter activity, GO:0055085 - transmembrane transport	TO:0000224 - iron sensitivity	
8368	ZFP157		ZINC FINGER PROTEIN 157		ZINC FINGER PROTEIN 157				 Other						GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8369	ZFP173		ZINC FINGER PROTEIN 173		ZINC FINGER PROTEIN 173				 Other						GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8370	ZFP176		ZINC FINGER PROTEIN 176		ZINC FINGER PROTEIN 176				 Other						GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8371	ZFP177	OsSAP9, SAP9, ZFP33	ZINC FINGER PROTEIN 177	Zinc finger A20 and AN1 domain-containing stress-associated protein 9, stress associated protein 9	ZINC FINGER PROTEIN 177		7	AY282740. Q7Y1W9. LOC_Os07g07350. likely ortholog of AlSAP (Aeluropus littorals SAP) in rice.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0168800	LOC_Os07g07350.3, LOC_Os07g07350.2, LOC_Os07g07350.1				GO:0008270 - zinc ion binding, GO:0006950 - response to stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009611 - response to wounding	TO:0000303 - cold tolerance, TO:0000164 - stress trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
8372	ZFP181		ZINC FINGER PROTEIN 181		ZINC FINGER PROTEIN 181				 Other						GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8373	ZIP10	OsZIP10	ZINC TRANSPORTER 10	zinc transporter 10, Zrt-Irt-like protein 10	ZINC TRANSPORTER 10		3	AK107681, Os03g0667500	 Biochemical character	Os03g0667500	LOC_Os03g46470.1				GO:0005385 - zinc ion transmembrane transporter activity, GO:0006829 - zinc ion transport		
8375	ZIP4	OsZIP4	ZINC TRANSPORTER 4	zinc transporter 4, Zrt-Irt-like protein 4, Zinc-regulated transporter 4	ZINC TRANSPORTER 4		8	LOC_Os08g10630. AB126089. Q6ZJ91.	 Tolerance and resistance - Stress tolerance	Os08g0207500	LOC_Os08g10630.1	GR:0101275			GO:0030001 - metal ion transport, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0006829 - zinc ion transport, GO:0005385 - zinc ion transmembrane transporter activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016021 - integral to membrane, GO:0010043 - response to zinc ion, GO:0046873 - metal ion transmembrane transporter activity, GO:0008270 - zinc ion binding, GO:0016020 - membrane	TO:0000351 - zinc sensitivity	PO:0004013 - epidermal cell , PO:0005417 - phloem , PO:0009005 - root , PO:0009006 - shoot system 
8376	ZIP5	OsZIP5, OsZIP8, ZIP8, OsZIP9	ZINC TRANSPORTER 5	zinc transporter 5, Zrt-Irt-like protein 5, Zinc-regulated transporter 5, zinc transporter 8, Zrt-Irt-like protein 8, zinc transporter 9, Zrt-Irt-like protein 9, Zinc-regulated transporter 9	ZINC TRANSPORTER 5		5	LOC_Os05g39560. AB126087, AY281300. Q6L8G0. OsZIP8 in Yang et al. 2009. OsZIP5 (AB126087), OsZIP8 (AK070864) , OsZIP9 (AY281300) in Narayanan et al. 2007, Shao et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0472700	LOC_Os05g39560.1	GR:0101277,GR:0101284			GO:0005385 - zinc ion transmembrane transporter activity, GO:0046873 - metal ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0008270 - zinc ion binding, GO:0030001 - metal ion transport, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0006829 - zinc ion transport		
8377	ZIP6	OsZIP6	ZINC TRANSPORTER 6	zinc transporter 6, Zrt-Irt-like protein 6, Zinc-regulated transporter 6	ZINC TRANSPORTER 6		5	LOC_Os05g07210. AB126088. Q6L8F9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0164800	LOC_Os05g07210.1	GR:0101276			GO:0030001 - metal ion transport, GO:0046686 - response to cadmium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0006829 - zinc ion transport, GO:0008270 - zinc ion binding, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0046873 - metal ion transmembrane transporter activity		
8378	ZIP7	OsZIP7	ZINC TRANSPORTER 7	zinc transporter 7, Zrt-Irt-like protein 7, Zinc-regulated transporter 7	ZINC TRANSPORTER 7		5	LOC_Os05g10940. AB126090. Q6L8F7. TO:0006053: zinc concentration.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0198400	LOC_Os05g10940.1	GR:0101278			GO:0005385 - zinc ion transmembrane transporter activity, GO:0006829 - zinc ion transport, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane	TO:0000351 - zinc sensitivity	
8381	TIP1;2	OsTIP1;2, TIP1-2, TIP1.2, TIP1	TONOPLAST INTRINSIC PROTEIN 1;2	Probable aquaporin TIP1.2, Probable aquaporin TIP1-2, Tonoplast intrinsic protein 1-2	TONOPLAST INTRINSIC PROTEIN 1;2		1	AP003627. Q94CS9. LOC_Os01g74450.	 Biochemical character	Os01g0975900	LOC_Os01g74450.1				GO:0055085 - transmembrane transport, GO:0005773 - vacuole, GO:0005215 - transporter activity, GO:0006810 - transport, GO:0016020 - membrane, GO:0016021 - integral to membrane		
8382	TIP3;1	OsTIP3;1, TIP3-1, TIP3.1, TIP3, OsEnS-139	TONOPLAST INTRINSIC PROTEIN 3;1	Probable aquaporin TIP3.1, Probable aquaporin TIP3-1, Tonoplast intrinsic protein 3-1, endosperm-specific gene 139	TONOPLAST INTRINSIC PROTEIN 3;1		10	AC023240. Q9FWV6. LOC_Os10g35050.	 Biochemical character	Os10g0492600	LOC_Os10g35050.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0006810 - transport, GO:0016020 - membrane, GO:0005773 - vacuole, GO:0055085 - transmembrane transport		
8383	TIP3;2	OsTIP3;2, TIP3-2, OsEnS-70	TONOPLAST INTRINSIC PROTEIN 3;2	Probable aquaporin TIP3-2, Tonoplast intrinsic protein 3-2, endosperm-specific gene 70	TONOPLAST INTRINSIC PROTEIN 3;2		4	AL663019. Q7XKI5. LOC_Os04g44570.	 Biochemical character	Os04g0527900	LOC_Os04g44570.1				GO:0055085 - transmembrane transport, GO:0005215 - transporter activity, GO:0005773 - vacuole, GO:0016021 - integral to membrane		
8384	TIP4;1	OsTIP4;1, TIP4-1	TONOPLAST INTRINSIC PROTEIN 4;1	Probable aquaporin TIP4-1, Tonoplast intrinsic protein 4-1	TONOPLAST INTRINSIC PROTEIN 4;1		5	AC145396. Q75GA5. TO:0006054: arsenic concentration. TO:0006059: cadmium concentration. LOC_Os05g14240. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os05g0231700	LOC_Os05g14240.2, LOC_Os05g14240.1				GO:0016021 - integral to membrane, GO:0009566 - fertilization, GO:0005215 - transporter activity, GO:0006810 - transport, GO:0005773 - vacuole		
8385	TIP4;2	OsTIP4;2, TIP4.2, TIP4-2	TONOPLAST INTRINSIC PROTEIN 4;2	Probable aquaporin TIP4.2, Probable aquaporin TIP4-2, Tonoplast intrinsic protein 4-2	TONOPLAST INTRINSIC PROTEIN 4;2		1	AP001550. Q9LWR0. LOC_Os01g13130. Tonoplast membrane integral protein.	 Biochemical character	Os01g0232100	LOC_Os01g13130.1				GO:0006810 - transport, GO:0016020 - membrane, GO:0005773 - vacuole, GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
8386	TIP4;3	OsTIP4;3, TIP4.3, TIP4-3	TONOPLAST INTRINSIC PROTEIN 4;3	Probable aquaporin TIP4.3, Probable aquaporin TIP4-3, Tonoplast intrinsic protein 4-3	TONOPLAST INTRINSIC PROTEIN 4;3		1	AP001550. Q9LWR2. LOC_Os01g13120.	 Biochemical character	Os01g0232000	LOC_Os01g13120.1				GO:0005215 - transporter activity, GO:0006810 - transport, GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0005773 - vacuole, GO:0016021 - integral to membrane		
8387	TIP5;1	OsTIP5;1	TONOPLAST INTRINSIC PROTEIN 5;1	Probable aquaporin TIP5-1, Tonoplast intrinsic protein 5-1	TONOPLAST INTRINSIC PROTEIN 5;1		4	AL663000. Q7XU31. LOC_Os04g46490.	 Biochemical character	Os04g0550800	LOC_Os04g46490.1				GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0005773 - vacuole, GO:0005215 - transporter activity		
8388	TOP6A1	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1	TOPOISOMERASE 6 SUBUNIT A1	topoisomerase 6 subunit A1, sporulation protein11-1	TOPOISOMERASE 6 SUBUNIT A1	Osspo11-1	3	GU170363(Japonica), AJ549926(Indica). AB219537.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0752200	LOC_Os03g54091.1				GO:0003916 - DNA topoisomerase activity, GO:0003677 - DNA binding, GO:0000706 - meiotic DNA double-strand break processing, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0016853 - isomerase activity, GO:0034090 - maintenance of meiotic sister chromatid cohesion, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042138 - meiotic DNA double-strand break formation, GO:0051026 - chiasma formation, GO:0007131 - reciprocal meiotic recombination		
8389	TOP6A2	OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B	TOPOISOMERASE 6 SUBUNIT A2	topoisomerase 6 subunit A2	TOPOISOMERASE 6 SUBUNIT A2		8	AJ605583(Indica), AB219538(Japonica)	 Biochemical character	Os08g0156900	LOC_Os08g06050.1				GO:0009651 - response to salt stress, GO:0003916 - DNA topoisomerase activity, GO:0009414 - response to water deprivation		
8390	TOP6A3	OsTOP6A3, OsSPO11-3, OsSPO11C	TOPOISOMERASE 6 SUBUNIT A3	topoisomerase 6 subunit A3	TOPOISOMERASE 6 SUBUNIT A3		3	AJ550618(Indica), AB219539(Japonica)	 Biochemical character	Os03g0284800	LOC_Os03g17610.1				GO:0009651 - response to salt stress, GO:0003916 - DNA topoisomerase activity, GO:0009414 - response to water deprivation		
8391	TOP6B	OsTOP6B, OsSPO11-6B	TOPOISOMERASE 6 SUBUNIT B	topoisomerase 6 subunit B	TOPOISOMERASE 6 SUBUNIT B		9	AJ582989(Indica), AY371050(Japonica). HG793980. Topo6 (topoisomerase 6) in Blanera et al. 2014.	 Biochemical character	Os09g0279600	LOC_Os09g10770.1				GO:0003916 - DNA topoisomerase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation		
8392	CKX1	OsCKX1	CYTOKININ  OXIDASE/DEHYDROGENASE 1	cytokinin oxidase 1	CYTOKININ  OXIDASE/DEHYDROGENASE 1		1	Q0JQ12. LOC_Os01g09260. GO:1901698: response to nitrogen compound.	 Biochemical character	Os01g0187600	LOC_Os01g09260.1				GO:0019139 - cytokinin dehydrogenase activity, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0009690 - cytokinin metabolic process, GO:0009735 - response to cytokinin stimulus, GO:0005615 - extracellular space, GO:0009733 - response to auxin stimulus, GO:0050660 - FAD binding, GO:0009725 - response to hormone stimulus	TO:0002660 - cytokinin content, TO:0000401 - plant growth hormone sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000011 - nitrogen sensitivity	
8393	CKX3	OsCKX3, ckx3	CYTOKININ OXIDASE/DEHYDROGENASE 3	Putative cytokinin oxidase 3, cytokinin oxidase 3	CYTOKININ OXIDASE/DEHYDROGENASE 3		10	LOC_Os10g34230. Q8LNV6.	 Biochemical character	Os10g0483500	LOC_Os10g34230.1	GR:0020052			GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space, GO:0016491 - oxidoreductase activity, GO:0019139 - cytokinin dehydrogenase activity, GO:0022900 - electron transport chain, GO:0050660 - FAD binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0032940 - secretion by cell, GO:0009690 - cytokinin metabolic process		
8394	CKX4	OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2	CYTOKININ OXIDASE/DEHYDROGENASE 4	Putative cytokinin dehydrogenase 4, cytokinin oxidase 4	CYTOKININ OXIDASE/DEHYDROGENASE 4		1	LOC_Os01g71310. BF889461. Q5JLP4. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0940000	LOC_Os01g71310.1	GR:0020053			GO:0022900 - electron transport chain, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space, GO:0009690 - cytokinin metabolic process, GO:0016491 - oxidoreductase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0019139 - cytokinin dehydrogenase activity, GO:0050660 - FAD binding, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0051607 - defense response to virus, GO:0032940 - secretion by cell, GO:0009725 - response to hormone stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance	
8395	CKX5	OsCKX5, ckx5	CYTOKININ OXIDASE/DEHYDROGENASE 5	Putative cytokinin oxidase 5, cytokinin oxidase 5	CYTOKININ OXIDASE/DEHYDROGENASE 5		1	LOC_Os01g56810. Q5ZAY9. GO:1901698: response to nitrogen compound.	 Biochemical character	Os01g0775400	LOC_Os01g56810.2, LOC_Os01g56810.1	GR:0020054			GO:0009823 - cytokinin catabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0016491 - oxidoreductase activity, GO:0050660 - FAD binding, GO:0009735 - response to cytokinin stimulus, GO:0032940 - secretion by cell, GO:0019139 - cytokinin dehydrogenase activity, GO:0005615 - extracellular space, GO:0022900 - electron transport chain, GO:0009694 - jasmonic acid metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009725 - response to hormone stimulus, GO:0009536 - plastid	TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0002660 - cytokinin content, TO:0000167 - cytokinin sensitivity	
8396	CKX6	OsCKX6	CYTOKININ  OXIDASE/DEHYDROGENASE 6	cytokinin oxidase 6	CYTOKININ  OXIDASE/DEHYDROGENASE 6		2	LOC_Os02g12770. Q6YW51.	 Biochemical character	Os02g0220000					GO:0050660 - FAD binding, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space, GO:0009690 - cytokinin metabolic process, GO:0019139 - cytokinin dehydrogenase activity		
8397	CKX7	OsCKX7	CYTOKININ  OXIDASE/DEHYDROGENASE 7	cytokinin oxidase 7	CYTOKININ  OXIDASE/DEHYDROGENASE 7		2	LOC_Os02g12780. Q6YW50.	 Biochemical character	Os02g0220100	LOC_Os02g12780.1				GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0009690 - cytokinin metabolic process, GO:0005615 - extracellular space, GO:0019139 - cytokinin dehydrogenase activity, GO:0050660 - FAD binding		
8398	CKX8	OsCKX8	CYTOKININ  OXIDASE/DEHYDROGENASE 8	cytokinin oxidase 8	CYTOKININ  OXIDASE/DEHYDROGENASE 8		4	LOC_Os04g44230. A3AVP1.	 Biochemical character	Os04g0523500	LOC_Os04g44230.1				GO:0009690 - cytokinin metabolic process, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space, GO:0050660 - FAD binding, GO:0019139 - cytokinin dehydrogenase activity		
8399	CKX9	OsCKX9	CYTOKININ  OXIDASE/DEHYDROGENASE 9	cytokinin oxidase 9	CYTOKININ  OXIDASE/DEHYDROGENASE 9		5	LOC_Os05g31040. Q75K78. GO:1901698: response to nitrogen compound.	 Biochemical character	Os05g0374200	LOC_Os05g31040.1				GO:0050660 - FAD binding, GO:0005615 - extracellular space, GO:0009735 - response to cytokinin stimulus, GO:0009690 - cytokinin metabolic process, GO:0009733 - response to auxin stimulus, GO:0009725 - response to hormone stimulus, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0019139 - cytokinin dehydrogenase activity	TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000167 - cytokinin sensitivity	
8400	CKX10	OsCKX10	CYTOKININ  OXIDASE/DEHYDROGENASE 10	cytokinin oxidase 10	CYTOKININ  OXIDASE/DEHYDROGENASE 10		6	LOC_Os06g37500. Q5Z620.	 Biochemical character	Os06g0572300	LOC_Os06g37500.1				GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0050660 - FAD binding, GO:0009690 - cytokinin metabolic process, GO:0005615 - extracellular space, GO:0019139 - cytokinin dehydrogenase activity		
8401	CKX11	OsCKX11	CYTOKININ  OXIDASE/DEHYDROGENASE 11	cytokinin oxidase 11	CYTOKININ  OXIDASE/DEHYDROGENASE 11		8	LOC_Os08g35860. Q6Z955.	 Biochemical character	Os08g0460600	LOC_Os08g35860.1				GO:0009690 - cytokinin metabolic process, GO:0005615 - extracellular space, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0019139 - cytokinin dehydrogenase activity, GO:0050660 - FAD binding		
8402	OSC4	Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1	ANTHER SPECIFIC PROTEIN 4	type C non-specific lipid transfer protein 1, non-specific lipid transfer protein c1, lipid transfer protein c1	ANTHER SPECIFIC PROTEIN 4		8	D10982, D21159. BAD09233.	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0546300	LOC_Os08g43290.1				GO:0009555 - pollen development, GO:0048653 - anther development		PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
8403	OSC6	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6	ANTHER SPECIFIC PROTEIN 6	GPI-anchored non-specific lipid transfer protein 25, type G nsLTP 25, type G non-specific lipid transfer protein 25	ANTHER SPECIFIC PROTEIN 6		11	D10983, D21160. D29739. OsC6 function appears toextend to anther cuticle formation (Zhang et al., 2010).	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0582500	LOC_Os11g37280.1				GO:0008233 - peptidase activity, GO:0009555 - pollen development, GO:0010584 - pollen exine formation, GO:0006869 - lipid transport	TO:0000432 - temperature response trait	PO:0009066 - anther 
8404	ASR1	OsAsr1, OsASR3, ASR3, Asr3	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN	"Abiotic Stress Responsive 3, \"ABA-, stress and ripening-induced protein 3\", \"abscisic acid-, stress- and ripening (ASR) gene 3\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN		2	OsASR3 in Philippe et al. 2010, Joo et al. 2013, Perez-Diaz et al. 2013, Li et al. 2016, Jiang et al. 2017. LOC_Os02g33820.	 Tolerance and resistance - Stress tolerance	Os02g0543000	LOC_Os02g33820.1				GO:0009409 - response to cold, GO:0006950 - response to stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
8405	ASR2	OsAsr2, OsASR4, OsASR6	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 2 PROTEIN	"Abiotic Stress Responsive 4, \"ABA-, stress and ripening-induced protein 6\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 2 PROTEIN		1	OsASR4 in Joo et al. 2013. OsASR6 in Philippe et al. 2010 and Perez-Diaz et al. 2013. LOC_Os01g73250.	 Tolerance and resistance - Stress tolerance	Os01g0963600	LOC_Os01g73250.2, LOC_Os01g73250.1				GO:0006950 - response to stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
8406	ASR3	Asr3, OsASR5, OsASR1, Asr1	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 3 PROTEIN	"Abiotic Stress Responsive 5, \"ABA-, stress and ripening-induced protein 1\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 3 PROTEIN		1	OsASR5 in Joo et al. 2013. OsASR1 in Perez-Diaz et al. 2013 and Philippe et al. 2010. LOC_Os01g72900.	 Tolerance and resistance - Stress tolerance	Os01g0959100	LOC_Os01g72900.1				GO:0006950 - response to stress		
8407	ASR4	Asr4, OsASR6, OsASR2, Asr2	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 4 PROTEIN	"Abiotic Stress Responsive 6, \"ABA-, stress and ripening-induced protein 2\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 4 PROTEIN		1	OsASR6 in Joo et al. 2013. OsASR2 in Philippe et al. 2010 and Perez-Diaz et al. 2013. LOC_Os01g72910.	 Tolerance and resistance - Stress tolerance	Os01g0959200	LOC_Os01g72910.1				GO:0006950 - response to stress		
8408	ASR5	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 5 PROTEIN	"Abiotic Stress Responsive 1, \"ABA-, stress and ripening-induced protein 5\", \"abscisic acid-, stress- and ripening (ASR) gene 5\", \"abscisic acid, stress and ripening 2\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 5 PROTEIN	osasr5	11	LOC_Os11g06720. AF039573. EF576160. OsASR1 in Joo et al. 2013. OsASR2 in Li et al. 2017. GO:0090333: regulation of stomatal closure.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0167800	LOC_Os11g06720.1				GO:0006950 - response to stress, GO:0042742 - defense response to bacterium, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0010044 - response to aluminum ion, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010119 - regulation of stomatal movement, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0050832 - defense response to fungus	TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000522 - stomatal conductance, TO:0000605 - hydrogen peroxide content, TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance, TO:0000354 - aluminum sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	
8409	ASR6	Asr6	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 6 PROTEIN		ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 6 PROTEIN		4	Os04g0423700	 Tolerance and resistance - Stress tolerance	Os04g0423700	LOC_Os04g34620.1				GO:0006950 - response to stress		
8410	ATP6	atp6, OsPOX1, prx3, POX1	ATPASE SUBUNIT 6	peroxidase 1, class III peroxidase 3	ATPASE SUBUNIT 6		1	LOC_Os01g15830. dicistronic gene atp6-orf79, Rf1 promotes processing of atp6-orf79 transcript. BN000532.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0263300	LOC_Os01g15830.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0051707 - response to other organism, GO:0004601 - peroxidase activity, GO:0016887 - ATPase activity, GO:0005618 - cell wall, GO:0020037 - heme binding	TO:0000605 - hydrogen peroxide content	
8411	OSBZ8	OsBZ8, OsbZIP05	BZIP PROTEIN 8	bZIP transcription factor 05	BZIP PROTEIN 8		1	U42208. AY606941. a salt-stress inducible bZIP protein. LOC_Os01g46970.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0658900	LOC_Os01g46970.2, LOC_Os01g46970.1				GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0046983 - protein dimerization activity, GO:0005634 - nucleus		
8412	RAB16B	rab21, OsLEA28, OsRAB16D, OsRAB16b	RESPONSIVE TO ABA GENE 16B	Dehydrin Rab16B, RAB(RESPONSIVE TO ABA) GENE 16B, late embryogenesis abundant protein 28	DEHYDRIN RAB16B	rab16Bj	11	Y00842. Q2R4Z5(japonica), A2ZDX8(indica). AF333275 (promoter sequence). EF444533. OsRAB16D in Nakashima et al. 2013, Huang et al. 2018. LOC_Os11g26780.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0454200	LOC_Os11g26780.1				GO:0009415 - response to water, GO:0006950 - response to stress, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	
8413	RAB16C	rab21, OsLEA27, rab16C	RESPONSIVE TO ABA GENE 16C	RAB(RESPONSIVE TO ABA) GENE 16C, Dehydrin Rab16C, late embryogenesis abundant protein 27	DEHYDRIN RAB16C 		11	Q2R4Z7(japonica), A2ZDX6(indica). RAB16A in Hu et al. 2017.	 Tolerance and resistance - Stress tolerance	Os11g0454000	LOC_Os11g26760.1				GO:0009414 - response to water deprivation, GO:0006950 - response to stress, GO:0009415 - response to water	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000507 - osmotic adjustment capacity, TO:0006001 - salt tolerance	
8414	RAB16D	rab21, OsLEA26, Rab16D, OsRab16	RESPONSIVE TO ABA GENE 16D	RAB(RESPONSIVE TO ABA) GENE 16D, Dehydrin Rab16D, late embryogenesis abundant protein 26	DEHYDRIN RAB16D 		11	Q2R4Z8(japonica), A2ZDX4(indica).	 Tolerance and resistance - Stress tolerance	Os11g0453900	LOC_Os11g26750.1				GO:0009409 - response to cold, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0019722 - calcium-mediated signaling, GO:0009651 - response to salt stress, GO:0009415 - response to water	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
8416	GPS1	gps1	GAMETOPHYTIC POLLEN STERILITY 1						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8417	GPS10	gps10	GAMETOPHYTIC POLLEN STERILITY 10						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8418	GPS11	gps11	GAMETOPHYTIC POLLEN STERILITY 11						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8419	GPS12	gps12	GAMETOPHYTIC POLLEN STERILITY 12						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8420	GPS2	gps2	GAMETOPHYTIC POLLEN STERILITY 2						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8421	GPS3	gps3	GAMETOPHYTIC POLLEN STERILITY 3						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8422	GPS4	gps4	GAMETOPHYTIC POLLEN STERILITY 4						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8423	GPS5	gps5	GAMETOPHYTIC POLLEN STERILITY 5						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8424	GPS6	gps6	GAMETOPHYTIC POLLEN STERILITY 6						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8425	GPS7	gps7	GAMETOPHYTIC POLLEN STERILITY 7						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8426	GPS8	gps8	GAMETOPHYTIC POLLEN STERILITY 8						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8427	GPS9	gps9	GAMETOPHYTIC POLLEN STERILITY 9						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8428	PAIR2	Pair2, OsPAIR2, OsASY1	HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2	Homologous pairing aberration in rice meiosis 2	HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2	pair2	9	ortholog of Arabidopsis ASY1. AB109238. PO:0020047; microsporocyte ; PO:0000431; megasporocyte. GRO:0007147; 4.1-panicle initiation stage.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os09g0506800	LOC_Os09g32930.3, LOC_Os09g32930.1	GR:0100120			GO:0000238 - zygotene, GO:0009554 - megasporogenesis, GO:0009556 - microsporogenesis, GO:0000228 - nuclear chromosome, GO:0007129 - synapsis, GO:0005634 - nucleus, GO:0000237 - leptotene	TO:0000729 - meiotic cell cycle trait	PO:0000431 - megasporocyte , PO:0020047 - microsporocyte 
8429	RAG	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1	RICE AGAMOUS	MADS box gene3, MADS-box transcription factor 3, Protein AGAMOUS-like	PROTEIN AGAMOUS-LIKE	mads3-1, mads3-2, mads3-3, mads3-4, osmads3, osmads3-2, osmads3-3	1	Lodicules are homeotically transformed into stamens. Q40704. floral homeotic C-class gene. L37528. a rice homolog of AGAMOUS. KC611053-KC611064 (O. sativa and wild rice species, partial cds). LOC_Os01g10504.	 Reproductive organ - Inflorescence,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os01g0201700	LOC_Os01g10504.3, LOC_Os01g10504.2, LOC_Os01g10504.1				GO:0010229 - inflorescence development, GO:0030154 - cell differentiation, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0048653 - anther development	TO:0000621 - inflorescence development trait, TO:0000215 - stamen anatomy and morphology trait, TO:0006009 - lodicule anatomy and morphology trait, TO:0006023 - lodicule development trait, TO:0000622 - flower development trait	PO:0001083 - inflorescence development stage , PO:0009029 - stamen , PO:0009036 - lodicule , PO:0001049 - lodicule development stage , PO:0001004 - anther development stage , PO:0007615 - flower development stage 
8430	RAP1A	OsMADS15, FDRMADS3, RMADS215, MADS15, DEP	RICE APETALA 1A	MADS-box transcription factor 15, Protein APETALA1-like A, degenerative palea, MADS box gene15	PROTEIN APETALA1-LIKE A	dep, Osmads15	7	AP1-like MADS box protein. Q6Q9I2. AB003325, AF058698. a rice APETALA1 ortholog. 	 Reproductive organ,  Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os07g0108900	LOC_Os07g01820.1, LOC_Os07g01820.2, LOC_Os07g01820.3, LOC_Os07g01820.6, LOC_Os07g01820.5, LOC_Os07g01820.4				GO:0003700 - transcription factor activity, GO:0005515 - protein binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription		PO:0020094 - plant egg cell 
8432	REG1		RICE EMBRYO GLOBULIN-1 PROTEIN		RICE EMBRYO GLOBULIN-1 PROTEIN				 Seed - Morphological traits - Embryo						GO:0015671 - oxygen transport, GO:0019825 - oxygen binding, GO:0020037 - heme binding, GO:0009790 - embryonic development		
8433	REG2	REG-2	RICE EMBRYO GLOBULIN-2 PROTEIN		RICE EMBRYO GLOBULIN-2 PROTEIN			rice homolog of maize GLB2 globulin. AY427562 (promoter).	 Seed - Morphological traits - Embryo,  Seed - Physiological traits - Storage substances						GO:0015671 - oxygen transport, GO:0020037 - heme binding, GO:0009790 - embryonic development, GO:0019825 - oxygen binding	TO:0002653 - endosperm storage protein content	
8434	SPS1	sps1	SPOROPHYTIC POLLEN STERILITY 1						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8435	SPS10	sps10	SPOROPHYTIC POLLEN STERILITY 10						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8436	SPS11	sps11	SPOROPHYTIC POLLEN STERILITY 11						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8437	SPS12	sps12	SPOROPHYTIC POLLEN STERILITY 12				7		 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8438	SPS2	sps2	SPOROPHYTIC POLLEN STERILITY 2						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8439	SPS3	sps3	SPOROPHYTIC POLLEN STERILITY 3						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8440	SPS4	sps4	SPOROPHYTIC POLLEN STERILITY 4						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8441	SPS5	sps5	SPOROPHYTIC POLLEN STERILITY 5						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8442	SPS6	sps6	SPOROPHYTIC POLLEN STERILITY 6				3		 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8443	SPS7	sps7	SPOROPHYTIC POLLEN STERILITY 7						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8444	SPS8	sps8	SPOROPHYTIC POLLEN STERILITY 8						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8445	SPS9	sps9	SPOROPHYTIC POLLEN STERILITY 9				9		 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8446	 LF1	HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1	LATERAL FLORET 1	rice homeobox gene 10, Homeobox-leucine zipper protein HOX10, Homeodomain transcription factor HOX10, HD-ZIP protein HOX10, HOMEODOMAIN CONTAINING PROTEIN 1, Homeodomain transcription factor HOX10, lateral florets 1	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX10	lf1	3	LOC_Os03g01890. EF555531. A2XBL9 (indica), Q6TAQ6 (japonica).  leucin zipper gene family. 	 Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0109400	LOC_Os03g01890.2, LOC_Os03g01890.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0010582 - floral meristem determinacy, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009908 - flower development	TO:0000657 - spikelet anatomy and morphology trait	
8447	HOX11	Oshox11, OsHox11	HOMEOBOX GENE 11	rice homeobox gene 11, Homeobox-leucine zipper protein HOX11, Homeodomain transcription factor HOX11, HD-ZIP protein HOX11	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX11		9	Os09g27450. EF555532, AY559046, CI309350, CI258099. A2Z1U1(indica), Q67UE2(japonica).	 Other	Os09g0447000	LOC_Os09g27450.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
8448	HOX12	Oshox12, OsHox12	HOMEOBOX GENE 12	rice homeobox gene 12, Homeobox-leucine zipper protein HOX12, Homeodomain transcription factor HOX12, HD-ZIP protein HOX12	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX12		3	Os03g10210. EF555533, AK073446. A2XDK5(indica), Q10QF2(japonica).	 Reproductive organ - panicle,  Other	Os03g0198600	LOC_Os03g10210.1				GO:0009685 - gibberellin metabolic process, GO:0010336 - gibberellic acid homeostasis, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0001002 - inflorescence exsertion, TO:0002675 - gibberellic acid content	PO:0009049 - inflorescence 
8449	HOX13	Oshox13, OsHox13	HOMEOBOX GENE 13	rice homeobox gene 13, Homeobox-leucine zipper protein HOX13, Homeodomain transcription factor HOX13, HD-ZIP protein HOX13	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX13		3	LOC_Os03g08960. EF555534, AK105644. A2XDD6(indica), Q10QP3(japonica).	 Other	Os03g0188900	LOC_Os03g08960.1				GO:0043565 - sequence-specific DNA binding, GO:0009536 - plastid, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003700 - transcription factor activity		
8450	HOX14	Oshox14, OsHox14	HOMEOBOX GENE 14	rice homeobox gene 14, Homeobox-leucine zipper protein HOX14, Homeodomain transcription factor HOX14, HD-ZIP protein HOX14	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX14		7	Os07g39320. EF555535, AY559047. A2YN17(indica), Q7XI85(japonica).	 Other	Os07g0581700	LOC_Os07g39320.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
8451	HOX15	Oshox15, OsHox15	HOMEOBOX GENE 15	rice homeobox gene 15, Homeobox-leucine zipper protein HOX15, Homeodomain transcription factor HOX15, HD-ZIP protein HOX15	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX15		10	Os10g01470. EF555536, AK060176, CK069199, BF430484. A2Z4C4(indica), Q7G737(japonica).	 Other	Os10g0103700	LOC_Os10g01470.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
8452	HOX16	Oshox16, OsHox16	HOMEOBOX GENE 16	rice homeobox gene 16, Homeobox-leucine zipper protein HOX16, Homeodomain transcription factor HOX16, HD-ZIP protein HOX16	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX16		2	Os02g49700. EF555537, AY559045. A2X980(indica), Q6YWR4(jponiac).	 Tolerance and resistance - Stress tolerance,  Other	Os02g0729700	LOC_Os02g49700.1, LOC_Os02g49700.2, LOC_Os02g49700.3				GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription	TO:0000259 - heat tolerance	
8453	HOX17	Oshox17, OsHox17	HOMEOBOX GENE 17	rice homeobox gene 17, Homeobox-leucine zipper protein HOX17, Homeodomain transcription factor HOX17, HD-ZIP protein HOX17	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX17		4	Os04g46350. EF555538, AK122006. Q01I23(indica), Q0JB92(japonica).	 Other	Os04g0548700	LOC_Os04g46350.1				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
8454	HOX18	Oshox18, OsHox18	HOMEOBOX GENE 18	rice homeobox gene 18, Homeobox-leucine zipper protein HOX18, Homeodomain transcription factor HOX18, HD-ZIP protein HOX18	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX18		6	Os06g48290. EF555539. A2YGL9(indica), Q5Z6F6(japonica).	 Other	Os06g0698200	LOC_Os06g48290.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003700 - transcription factor activity		
8455	HOX19	Oshox19, OsHox19	HOMEOBOX GENE 19	rice homeobox gene 19, Homeobox-leucine zipper protein HOX19, Homeodomain transcription factor HOX19, HD-ZIP protein HOX19	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX19		3	Os03g12860. EF555540, AY554031, CK069199. A2XE76(indica), Q8GRL4(japonica).	 Other	Os03g0231000	LOC_Os03g12860.1				GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
8456	HOX2	Oshox2, OsHox2	HOMEOBOX GENE 2	rice homeobox gene 2, Homeobox-leucine zipper protein HOX2 ; Homeodomain transcription factor HOX2 ; HD-ZIP protein HOX2	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX2		6	Os06g04870. EF555522, AF145726. Q5VPE3(japonica), Q84U86(indica).	 Other	Os06g0140700	LOC_Os06g04870.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus		
8457	HOX20	Oshox20, OsHox20	HOMEOBOX GENE 20	rice homeobox gene 20, Homeobox-leucine zipper protein HOX20, Homeodomain transcription factor HOX20, HD-ZIP protein HOX20	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX20		8	Os08g37580. EF555543, AK068244. A2YWC0(indica), Q6Z248(japonica).	 Other	Os08g0481400	LOC_Os08g37580.1				GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity		
8458	HOX21	Oshox21, OsHox21	HOMEOBOX GENE 21	rice homeobox gene 21, Homeobox-leucine zipper protein HOX21, Homeodomain transcription factor HOX21, HD-ZIP protein HOX21	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX21		3	Os03g07450. EF555544, AY554028, BP184690. A2XD08(indica), Q8S7W9(japonica).	 Other	Os03g0170600	LOC_Os03g07450.1				GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
8459	HOX22	Oshox22, OsHox22	HOMEOBOX GENE 22	rice homeobox gene 22, Homeobox-leucine zipper protein HOX22, Homeodomain transcription factor HOX22, HD-ZIP protein HOX22	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX22		4	Os04g45810. EF555545, AY224440. Q01IK0(indica), Q7XUJ5(japonica).	 Other	Os04g0541700	LOC_Os04g45810.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
8460	HOX23	Oshox23, OsHox23	HOMEOBOX GENE 23	rice homeobox gene 23, Homeobox-leucine zipper protein HOX23, Homeodomain transcription factor HOX23, HD-ZIP protein HOX23	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX23		10	LOC_Os10g26500. EU085431, CT837749, CT851849. Q94GL5(japonica), A2Z734(indica).	 Other	Os10g0404900	LOC_Os10g26500.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding		
8461	HOX24	Oshox24, OsHox24, OsSLI1	HOMEOBOX GENE 24	rice homeobox gene 24, Homeobox-leucine zipper protein HOX24, Homeodomain transcription factor HOX24, HD-ZIP protein HOX24, stress largely induced 1	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX24		2	LOC_Os02g43330. EF555546, AK063685. A2X7U1(indica), Q6H6S3(japonica).	 Tolerance and resistance - Stress tolerance,  Other	Os02g0649300	LOC_Os02g43330.1				GO:0009738 - abscisic acid mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress	TO:0000168 - abiotic stress trait, TO:0000615 - abscisic acid sensitivity	
8462	HOX25	Oshox25, OsHox25	HOMEOBOX GENE 25	rice homeobox gene 25, Homeobox-leucine zipper protein HOX25, Homeodomain transcription factor HOX25, HD-ZIP protein HOX25	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX25		9	Os09g21180. EF555547, CB678360, CT862400. A2Z0Q0(indica), A3BYC1(japonica).	 Other	Os09g0379600	LOC_Os09g21180.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006350 - transcription		
8463	HOX26	Oshox26	HOMEOBOX GENE 26	rice homeobox gene 26, Putative homeobox-leucine zipper protein HOX26, Homeodomain transcription factor HOX26, HD-ZIP protein HOX26	PUTATIVE HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX26		2	LOC_Os02g05640. Q67UX6.	 Other	Os02g0149900	LOC_Os02g05640.1				GO:0009536 - plastid, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
8464	HOX27	Oshox27, OsHox27	HOMEOBOX GENE 27	rice homeobox gene 27, Homeobox-leucine zipper protein HOX27, Homeodomain transcription factor HOX27, HD-ZIP protein HOX27	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX27		8	Os08g36220. EF555548, AK241196. A2YW03(indica), Q6YPD0(japonica).	 Other	Os08g0465000	LOC_Os08g36220.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
8465	HOX28	Oshox28, OsHox28	HOMEOBOX GENE 28	rice homeobox gene 28, Homeobox-leucine zipper protein HOX28, Homeodomain transcription factor HOX28, HD-ZIP protein HOX28	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX28		6	Os06g04850. EF555549, AK059116. A2Y931(indica), Q5VPE5(japonica).	 Other	Os06g0140400	LOC_Os06g04850.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
8466	HOX29	Oshox29, OsHox29, OSHB5	HOMEOBOX GENE 29	rice homeobox gene 29, Homeobox-leucine zipper protein HOX29, Homeodomain transcription factor HOX29, HD-ZIP protein HOX29, HOMEODOMAIN CONTAINING PROTEIN 5	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX29		1	LOC_Os01g10320. EF555550, CT845867, CB654749. AB374207. A2WLR5(indica), Q5QMZ9(japonica).	 Other	Os01g0200300	LOC_Os01g10320.1				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8467	HOX30	Oshox30	HOMEOBOX GENE 30	rice homeobox gene 30	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX30				 Other						GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription		
8468	HOX31	Oshox31	HOMEOBOX GENE 31	rice homeobox gene 31	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX31				 Other						GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
8470	HOX33	Oshox33, OsHox33, OSHB3, SIP22	HOMEOBOX GENE 33	rice homeobox gene 33, Homeobox-leucine zipper protein HOX33, Homeodomain transcription factor HOX33, HD-ZIP protein HOX33, HOMEODOMAIN CONTAINING PROTEIN 3, SKIP interacting protein 22, SKIPa-interacting protein 22, SKIPa-interacting protein 22	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX33		12	LOC_Os12g41860. EF555552. EU368712. A2ZMN9 (indica), Q2QM96 (japonica).  leucin zipper gene family. 	 Other	Os12g0612700	LOC_Os12g41860.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
8471	HOX8	Oshox8	HOMEOBOX GENE 8	rice homeobox gene 8, Homeobox-leucine zipper protein HOX8, Homeodomain transcription factor HOX8, HD-ZIP protein HOX8	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX8		10	Os10g23090. EF555528, AY346329. Q338Z7(indica), Q6V9S9(japonica).	 Other	Os10g0377300	LOC_Os10g23090.2, LOC_Os10g23090.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
8472	HOX9	Oshox9, OsHox9, OsHB2, HB2, OSHB2	HOMEOBOX GENE 9	rice homeobox gene 9, Homeobox-leucine zipper protein HOX9, Homeodomain transcription factor HOX9, HD-ZIP protein HOX9, HOMEODOMAIN CONTAINING PROTEIN 2	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX9		10	EF555530. Q9AV49(japonica), A2Z8L4(indica). leucin zipper gene family. 	 Other	Os10g0480200	LOC_Os10g33960.4, LOC_Os10g33960.3, LOC_Os10g33960.2, LOC_Os10g33960.1				GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8473	HAP2A	OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A7, NUCLEAR FACTOR-Y subunit NF-YA7, NF-YA transcription factor 7, NF-YA subunit 7, NF-YA family 7	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		8	AB288027. LOC_Os08g09690.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0196700	LOC_Os08g09690.2, LOC_Os08g09690.1				GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
8474	HAP2B	OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A9, NUCLEAR FACTOR-Y subunit NF-YA9, NF-YA transcription factor 9, NF-YA subunit 9, NF-YA family 9	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		12	AB288028. LOC_Os12g41880.	 Other	Os12g0613000	LOC_Os12g41880.2, LOC_Os12g41880.1				GO:0016602 - CCAAT-binding factor complex, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
8475	HAP2C	OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A1, NUCLEAR FACTOR-Y subunit NF-YA1, NF-YA transcription factor 1, NF-YA subunit 1, NF-YA family 1	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2c	3	AB288029, AK069348. LOC_Os03g07880.	 Other	Os03g0174900	LOC_Os03g07880.3, LOC_Os03g07880.2, LOC_Os03g07880.1				GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006350 - transcription		
8476	HAP2D	OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A4, NUCLEAR FACTOR-Y subunit NF-YA4, NF-YA transcription factor 4, NF-YA subunit 4, NF-YA family 4	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2d	3	AB288030. LOC_Os03g48970.	 Other	Os03g0696300	LOC_Os03g48970.4, LOC_Os03g48970.3, LOC_Os03g48970.2, LOC_Os03g48970.1				GO:0006350 - transcription, GO:0016602 - CCAAT-binding factor complex, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000615 - abscisic acid sensitivity	
8477	HAP2E	OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A2, NUCLEAR FACTOR-Y subunit NF-YA2, NF-YA transcription factor 2, NF-YA subunit 2, NF-YA family 2	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2e	3	AB288031. LOC_Os03g29760.	 Other	Os03g0411100	LOC_Os03g29760.3, LOC_Os03g29760.2, LOC_Os03g29760.1				GO:0005634 - nucleus, GO:0016602 - CCAAT-binding factor complex, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding		
8478	HAP2F	OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A10, NUCLEAR FACTOR-Y subunit NF-YA10, NF-YA transcription factor 10, NF-YA subunit 10, NF-YA family 10	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		12	AB288032. LOC_Os12g42400.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0618600	LOC_Os12g42400.4, LOC_Os12g42400.3, LOC_Os12g42400.2, LOC_Os12g42400.1				GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006350 - transcription	TO:0000276 - drought tolerance	
8479	HAP2G	OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A6, NUCLEAR FACTOR-Y subunit NF-YA6, NF-YA transcription factor 6, NF-YA subunit 6, NF-YA family 6	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		7	AB288033. LOC_Os07g41720.	 Other	Os07g0608200	LOC_Os07g41720.2, LOC_Os07g41720.1				GO:0016602 - CCAAT-binding factor complex, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
8480	HAP2H	OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A3, NUCLEAR FACTOR-Y subunit NF-YA3, NF-YA transcription factor 3, NF-YA subunit 3, NF-YA family 3	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2h	3	AB288034. LOC_Os03g44540.	 Other	Os03g0647600	LOC_Os03g44540.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent		
8481	HAP2I	OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A8, NUCLEAR FACTOR-Y subunit NF-YA8, NF-YA transcription factor 8, endosperm-specific gene 136, NF-YA subunit 8, NF-YA family 8	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		10	BR000373. LOC_Os10g25850.	 Other	Os10g0397900	LOC_Os10g25850.1				GO:0006350 - transcription, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding		PO:0009089 - endosperm 
8482	HAP2J	OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A5, NUCLEAR FACTOR-Y subunit NF-YA5, NF-YA transcription factor 5, NF-YA subunit 5, NF-YA family 5	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2j	7	BR000374. LOC_Os07g06470.	 Other	Os07g0158500	LOC_Os07g06470.2, LOC_Os07g06470.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0016602 - CCAAT-binding factor complex		
8483	HAP3D	OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9	HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	HAP3 subunit D, LEC1-type 3 subunit protein-D, endosperm-specific gene 83, NUCLEAR FACTOR-Y subunit B9, NUCLEAR FACTOR-Y subunit NF-YB9, HAP3 SUBUNIT D, NF-YB subunit 9, NF-YB family 9	HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX 		6	LOC_Os06g17480. AB288035, AB288038. HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX, HAP3, HAP3 subunit of HAP complex, NF-YB, CBF-A. PO:0009009; embryo ; PO:0000003; whole plant. LOC_Os06g17480.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Other	Os06g0285200	LOC_Os06g17480.1	GR:0061483			GO:0006350 - transcription, GO:0009845 - seed germination, GO:0005737 - cytoplasm, GO:0009790 - embryonic development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0000137 - days to heading, TO:0000276 - drought tolerance, TO:0000064 - embryo related trait, TO:0000485 - sterility related trait	PO:0009089 - endosperm , PO:0000003 - whole plant , PO:0009009 - plant embryo 
8484	HAP3E	OsHAP3E, OsLEC1/OsHAP3E, OsLEC1, OsNF-YB7, NF-YB7, NFYB7, L1L	HAP3E SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	HAP3 subunit E, LEC1-type 3 subunit protein-E, leafy cotyledon 1, NUCLEAR FACTOR-Y subunit B7, NUCLEAR FACTOR-Y subunit NF-YB7, LEC1-LIKE, LEAFY COTYLEDON1-LIKE, HAP3 SUBUNIT E, NF-YB subunit 7, NF-YB family 7	HAP3E SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	osnf-yb7	2	AB288036. LOC_Os02g49370. HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX, NF-YB, CBF-A. PO:0030104: caryopsis fruit.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Other	Os02g0725700	LOC_Os02g49370.2, LOC_Os02g49370.1	GR:0061484			GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0000137 - days to heading, TO:0000485 - sterility related trait, TO:0000276 - drought tolerance, TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
8485	HAP3F	OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10	HAP3F SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit B10, NUCLEAR FACTOR-Y subunit NF-YB10, NF-YB subunit 10, NF-YB family 10	HAP3F SUBUNIT OF CCAAT-BOX BINDING COMPLEX		7	AB288037. LOC_Os07g41580.	 Reproductive organ - Heading date,  Other	Os07g0606600	LOC_Os07g41580.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:2000028 - regulation of photoperiodism, flowering, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding	TO:0000137 - days to heading, TO:0002616 - flowering time	
8486	HAP3G	OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6	HAP3G SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit B6, NUCLEAR FACTOR-Y subunit NF-YB6, NF-YB subunit 6, NF-YB family 6	HAP3G SUBUNIT OF CCAAT-BOX BINDING COMPLEX		1	AB288038. LOC_Os01g70890.	 Other	Os01g0935200	LOC_Os01g70890.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription		
8488	HAP3I	OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8	HAP3I SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit B8, NUCLEAR FACTOR-Y subunit NF-YB8, NF-YB subunit 8, NF-YB family 8	HAP3I SUBUNIT OF CCAAT-BOX BINDING COMPLEX		3	LOC_Os03g29970. AB288040.	 Reproductive organ - Heading date,  Other	Os03g0413000	LOC_Os03g29970.1				GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:2000028 - regulation of photoperiodism, flowering, GO:0005737 - cytoplasm	TO:0002616 - flowering time	
8489	HAP3J	OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5	HAP3J SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit B5, NUCLEAR FACTOR-Y subunit NF-YB5, NF-YB subunit 5, NF-YB family 5	HAP3J SUBUNIT OF CCAAT-BOX BINDING COMPLEX		1	BR000375. LOC_Os01g70880.	 Other	Os01g0935100	LOC_Os01g70880.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8490	HAP3K	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41	HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear transcription factor Y subunit B-1, CCAAT-binding transcription factor subunit NF-YB1, leafy cotyledon 1, endosperm-specific gene 41, Nuclear Factor YB1, NUCLEAR FACTOR-Y subunit B1, NUCLEAR FACTOR-Y subunit NF-YB1, NF-YB subunit 1, NF-YB family 1	HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	osnf-yb1, osnf-yb1-1, osnf-yb1-2	2	LOC_Os02g49410. AJ300218. NF-YB, CBF-A. Q6Z348. GO:2000014: regulation of endosperm development. GO:2000034: regulation of seed maturation.	 Seed - Morphological traits,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Other	Os02g0725900	LOC_Os02g49410.1				GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0045449 - regulation of transcription, GO:0010431 - seed maturation, GO:0006350 - transcription, GO:0008283 - cell proliferation, GO:0009960 - endosperm development, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000162 - seed quality, TO:0000653 - seed development trait, TO:0002661 - seed maturation, TO:0000391 - seed size, TO:0000184 - seed anatomy and morphology trait, TO:0000266 - chalky endosperm, TO:0000397 - grain size	PO:0009089 - endosperm , PO:0007632 - seed maturation stage , PO:0007633 - endosperm development stage , PO:0005360 - aleurone layer 
8491	HAP5A	OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1, OsNF-YC4-2, NF-YC4-2	HAP5A SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C1 subunit, Nuclear factor Y C subunit 1, NUCLEAR FACTOR-Y subunit C1, NUCLEAR FACTOR-Y subunit NF-YC1, NF-YC subunit 1, NF-YC family 1	HAP5A SUBUNIT OF CCAAT-BOX BINDING COMPLEX		2	AB288041. LOC_Os02g07450. an AtNF-YC4 homolog. OsNF-YC4-2 in Li et al. 2015.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os02g0170500	LOC_Os02g07450.2, LOC_Os02g07450.1				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding	TO:0000276 - drought tolerance, TO:0000137 - days to heading, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
8492	HAP5B	OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3	HAP5B SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C4 subunit, Nuclear factor Y C subunit 4, NUCLEAR FACTOR-Y subunit C4, NUCLEAR FACTOR-Y subunit NF-YC4, NF-YC subunit 4, NF-YC family 4	HAP5B SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap5b	6	AB288042. LOC_Os06g45640. an AtNF-YC4 homolog. OsNF-YC4-3 in Li et al. 2015.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os06g0667100	LOC_Os06g45640.1				GO:0003700 - transcription factor activity, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0016602 - CCAAT-binding factor complex, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0009414 - response to water deprivation, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002616 - flowering time, TO:0006001 - salt tolerance	
8493	HAP5C	OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1	HAP5C SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C2 subunit, Nuclear factor Y C subunit 2, NUCLEAR FACTOR-Y subunit C2, NUCLEAR FACTOR-Y subunit NF-YC2, NF-YC subunit 2, NF-YC family 2	HAP5C SUBUNIT OF CCAAT-BOX BINDING COMPLEX		3	AB288043. LOC_Os03g14669. an AtNF-YC4 homolog. OsNF-YC4-1 in Li et al. 2015.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os03g0251350	LOC_Os03g14669.2, LOC_Os03g14669.1				GO:0005634 - nucleus, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0009737 - response to abscisic acid stimulus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0005737 - cytoplasm	TO:0002616 - flowering time, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000696 - starch content	
8494	HAP5D	OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6	HAP5D SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C6 subunit, Nuclear factor Y C subunit 6, NUCLEAR FACTOR-Y subunit C6, NUCLEAR FACTOR-Y subunit NF-YC6, NF-YC subunit 6, NF-YC family 6	HAP5D SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap5d	8	AB288044. LOC_Os08g38780.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os08g0496500	LOC_Os08g38780.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016602 - CCAAT-binding factor complex, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002616 - flowering time	
8495	HAP5E	OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7	HAP5E SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C7 subunit, Nuclear factor Y C subunit 7, NUCLEAR FACTOR-Y subunit C7, NUCLEAR FACTOR-Y subunit NF-YC7, NF-YC subunit 7, NF-YC family 7	HAP5E SUBUNIT OF CCAAT-BOX BINDING COMPLEX		9	AB288045. LOC_Os09g30310.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0480700	LOC_Os09g30310.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0016602 - CCAAT-binding factor complex, GO:0003700 - transcription factor activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
8496	HAP5F	OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5	HAP5F SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C5 subunit, Nuclear factor Y C subunit 5, NUCLEAR FACTOR-Y subunit C5, NUCLEAR FACTOR-Y subunit NF-YC5, NF-YC subunit 5, NF-YC family 5	HAP5F SUBUNIT OF CCAAT-BOX BINDING COMPLEX		8	AB288046. LOC_Os08g10560. 	 Tolerance and resistance - Stress tolerance,  Other	Os08g0206500					GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0009737 - response to abscisic acid stimulus, GO:0016602 - CCAAT-binding factor complex, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
8497	HAP5G	OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3	HAP5G SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C3 subunit, Nuclear factor Y C subunit 3, NUCLEAR FACTOR-Y subunit C3, NUCLEAR FACTOR-Y subunit NF-YC3, NF-YC subunit 3, NF-YC family 3	HAP5G SUBUNIT OF CCAAT-BOX BINDING COMPLEX		4	AB288047. LOC_Os04g58680. 	 Other	Os04g0683400	LOC_Os04g58680.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016602 - CCAAT-binding factor complex, GO:0006350 - transcription		
8498	DRAP1	OsDrAp1, DrAp1	DR1 ASSOCIATED PROTEIN 1	Dr1-associated protein1, eukaryotic general repressor DrAp1	DR1 ASSOCIATED PROTEIN 1		11	AF464904. subunit of Dr1/DrAp1 repressor. HQ858816. CCAAT transcription factor.	 Other	Os11g0544700 	LOC_Os11g34200.1				GO:0005634 - nucleus, GO:0016564 - transcription repressor activity, GO:0005515 - protein binding, GO:0043565 - sequence-specific DNA binding		
8499	DRAP2	OsDrAp2, DrAp2, OsHAPL1, HAPL1	DR1 ASSOCIATED PROTEIN 2	Dr1-associated protein2, eukaryotic general repressor DrAp2, Heme Activator Protein like 1	DR1 ASSOCIATED PROTEIN 2	oshapl1	5	AB288048. LOC_Os05g41450. subunit of Dr1/DrAp1 repressor.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os05g0494100	LOC_Os05g41450.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:2000028 - regulation of photoperiodism, flowering, GO:0048573 - photoperiodism, flowering, GO:0043565 - sequence-specific DNA binding, GO:0016564 - transcription repressor activity, GO:0009648 - photoperiodism, GO:0005634 - nucleus, GO:0005515 - protein binding	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000382 - 1000-seed weight, TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000040 - panicle length	PO:0025034 - leaf 
8500	CSL1	csl1	COMPACT SHOOT AND LEAFY HEAD 1	compact shoot and leafy head 1					 Heterochrony				0		GO:0010228 - vegetative to reproductive phase transition		
8501	CYP703A3	OsCYP703A3	CYTOCHROME P450 HYDROXYLASE 703A3		CYTOCHROME P450 HYDROXYLASE 703A3	cyp703a3-3	8		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0131100	LOC_Os08g03682.1		0		GO:0004497 - monooxygenase activity, GO:0048653 - anther development, GO:0010584 - pollen exine formation	TO:0000245 - pollen free, TO:0000437 - male sterility	PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009066 - anther 
8502	KAR		BETA KETOACYL REDUCTASE	Beta-ketoacyl reductase	BETA KETOACYL REDUCTASE		12	Os12g0242700	 Biochemical character	Os12g0242700	LOC_Os12g13930.1		0		GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase activity		
8503	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3	DENSE AND ERECT PANICLE 1	dense and erect panicle 1, erect-pose panicle, DENSE PANICLE 1, DENSE AND ERECT PANICLE1, DENSE AND ERECT PANICLES 1, G gamma subunit DEP1, Heterotrimeric G Protein gamma4 Subunit		dep1, Dn1-1, Dn1-2, Dn1-3, dep1-1, dep1-32, DEP1-A, DEP1-B	9	FJ039905, FJ039904. AB475006, AB475007. Putative keratin associated protein. phosphatidylethanolamine-binding protein-like domain protein. Reduce length of the inflorescence internodes. TO:0000800: inflorescence density (panicle density), TO:0000847: panicle anatomy and morphology trait. a major rice nitrogen-use efficiency quantitative trait locus qNGR9.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os09g0441900	LOC_Os09g26999.3, LOC_Os09g26999.2, LOC_Os09g26999.1		0		GO:0005886 - plasma membrane, GO:0005882 - intermediate filament, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0007186 - G-protein coupled receptor protein signaling pathway	TO:0002759 - grain number, TO:0000050 - inflorescence branching, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000456 - spikelet number, TO:0002731 - grain length to width ratio, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000040 - panicle length	
8504	DLT	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2	DWARF AND LOW-TILLERING	GRAS protein 32, SMALL ORGAN SIZE 2	GRAS PROTEIN 32	dlt, smos2, smos2-1, smos2-2	6	LOC_Os06g03710. regulate rice tillering. GAI-PGA-SCR(GRAS) FAMILY PROTEIN. GO:1900457: regulation of brassinosteroid mediated signaling pathway. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. 	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Heading date,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os06g0127800	LOC_Os06g03710.1		0		GO:0009734 - auxin mediated signaling pathway, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0008283 - cell proliferation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000226 - microtubule cytoskeleton organization, GO:0009742 - brassinosteroid mediated signaling	TO:0000227 - root length, TO:0000206 - leaf angle, TO:0002684 - plant cell size, TO:0002616 - flowering time, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0002601 - stamen size, TO:0002602 - pistil size, TO:0002677 - brassinosteroid sensitivity, TO:0000152 - panicle number, TO:0001035 - stem width, TO:0002637 - leaf size, TO:0000391 - seed size, TO:0002688 - leaf lamina joint bending	
8506	DWL1		DWARFISM AND WITHERED LEAF TIP 1				3		 Vegetative organ - Culm				0		GO:0007275 - multicellular organismal development		
8507	DMC1A	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51	MEIOTIC PROTEIN DMC1A	MEIOTIC PROTEIN Dmc1A, DNA repair protein Rad51	MEIOTIC PROTEIN DMC1A	Osdmc1a	12	AB046620, AY123340, AB079873. AB065111. AF265548. Disrupted meiotic cDNA 1, OsDmc1, Dmc1. PO:0009004; gametophyte. RICE LIM15 (MEIOSIS SPECIFIC), DMC1 homologue. LOC_Os12g04980.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0143800	LOC_Os12g04980.1	GR:0100601	0		GO:0007126 - meiosis, GO:0000733 - DNA strand renaturation, GO:0005515 - protein binding, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0006310 - DNA recombination, GO:0008094 - DNA-dependent ATPase activity, GO:0051026 - chiasma formation, GO:0000707 - meiotic DNA recombinase assembly, GO:0000724 - double-strand break repair via homologous recombination, GO:0043069 - negative regulation of programmed cell death, GO:0051321 - meiotic cell cycle, GO:0007129 - synapsis, GO:0003677 - DNA binding, GO:0007131 - reciprocal meiotic recombination, GO:0003684 - damaged DNA binding, GO:0000712 - resolution of meiotic joint molecules as recombinants	TO:0000389 - nuclear mediated male sterility, TO:0000599 - enzyme activity	PO:0009004 - gametophyte , PO:0009049 - inflorescence 
8508	DMC1B	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B	MEIOTIC PROTEIN DMC1B	MEIOTIC PROTEIN Dmc1B	MEIOTIC PROTEIN DMC1B	Osdmc1b	11	AY13339, AB079874. AF265549. Disrupted meiotic cDNA 1. Dmc1, OsDmc. RICE LIM15 (MEIOSIS SPECIFIC), DMC1 homologue. AB065112, AB064544. 	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os11g0146800	LOC_Os11g04954.1		0		GO:0006310 - DNA recombination, GO:0051026 - chiasma formation, GO:0000724 - double-strand break repair via homologous recombination, GO:0000733 - DNA strand renaturation, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0005515 - protein binding, GO:0007126 - meiosis, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0000707 - meiotic DNA recombinase assembly, GO:0003684 - damaged DNA binding, GO:0006281 - DNA repair, GO:0007131 - reciprocal meiotic recombination, GO:0005524 - ATP binding, GO:0008094 - DNA-dependent ATPase activity, GO:0007129 - synapsis	TO:0000485 - sterility related trait	PO:0009049 - inflorescence 
8510	PIP1;2	OsPIP1;2, PIP1-2, OsPIP1-2	PLASMA MEMBRANE INTRINSIC PROTEIN 1;2	Probable aquaporin PIP1-2, Plasma membrane intrinsic protein 1-2	PLASMA MEMBRANE INTRINSIC PROTEIN 1;2		4	AL606687. Q7XSQ9. LOC_Os04g47220. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0559700	LOC_Os04g47220.1				GO:0009915 - phloem loading, GO:0015770 - sucrose transport, GO:0010037 - response to carbon dioxide, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000394 - drought related trait, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000396 - grain yield, TO:0000291 - carbohydrate content	PO:0004006 - mesophyll cell , PO:0025034 - leaf , PO:0009005 - root 
8511	PIP1;3	OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3	PLASMA MEMBRANE INTRINSIC PROTEIN 1;3	Aquaporin PIP 1.3, Aquaporin PIP 1-3, Plasma membrane intrinsic protein 1-3, Water channel protein RWC3, Aquaporin RWC3	PLASMA MEMBRANE INTRINSIC PROTEIN 1;3		2	AP004026. Q9SXF8. LOC_Os02g57720. AB029325. BE607372. Water channel protein (WCP-I). GO:0035445: borate transmembrane transport. TO:0006043: boron concentration.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0823100	LOC_Os02g57720.1				GO:0042742 - defense response to bacterium, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0006950 - response to stress, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0010036 - response to boron, GO:0046713 - boron transport	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000018 - boron sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root 
8512	PIP2;2	OsPIP2;2, PIP2-2, OsPIP2-3	PLASMA MEMBRANE INTRINSIC PROTEIN 2;2	Probable aquaporin PIP2-2, Plasma membrane intrinsic protein 2-2	PLASMA MEMBRANE INTRINSIC PROTEIN 2;2		2	AP006168, Q6K215. LOC_Os02g41860. BE607365. Water channel protein (WCP-I). OsPIP2-3 in Guo et al. 2006.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os02g0629200	LOC_Os02g41860.4, LOC_Os02g41860.3, LOC_Os02g41860.2, LOC_Os02g41860.1				GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	
8513	PIP2;4	OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4	PLASMA MEMBRANE INTRINSIC PROTEIN 2;4	Aquaporin PIP2.4, Aquaporin PIP2-4, Plasma membrane intrinsic protein 2-4	PLASMA MEMBRANE INTRINSIC PROTEIN 2;4		7	AP004668. Q8GRT8. LOC_Os07g26630. GO:1901684: arsenate ion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0448100	LOC_Os07g26630.1				GO:0046685 - response to arsenic, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0055085 - transmembrane transport	TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
8514	PIP2;6	OsPIP2;6, PIP2-6, OsPIP2-5	PLASMA MEMBRANE INTRINSIC PROTEIN 2;6	Probable aquaporin PIP2-6, Plasma membrane intrinsic protein 2-6	PLASMA MEMBRANE INTRINSIC PROTEIN 2;6		4	AL731636. Q7XLR1. LOC_Os04g16450. OsPIP2-5 in Guo et al. 2006. GO:0035445: borate transmembrane transport. TO:0006043: boron concentration. GO:1901684: arsenate ion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0233400	LOC_Os04g16450.1				GO:0009414 - response to water deprivation, GO:0046685 - response to arsenic, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0046713 - boron transport, GO:0005215 - transporter activity, GO:0009409 - response to cold, GO:0010036 - response to boron, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000018 - boron sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	PO:0009005 - root 
8515	PIP2;7	OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6	PLASMA MEMBRANE INTRINSIC PROTEIN 2;7	Probable aquaporin PIP2.7, Probable aquaporin PIP2-7, Plasma membrane intrinsic protein 2-7	PLASMA MEMBRANE INTRINSIC PROTEIN 2;7		9	AP006149. Q651D5. LOC_Os09g36930. OsPIP2-6 in Guo et al . 2006. GO:1901684: arsenate ion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0541000	LOC_Os09g36930.1				GO:0046685 - response to arsenic, GO:0016021 - integral to membrane, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
8516	PIP2;8	OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7	PLASMA MEMBRANE INTRINSIC PROTEIN 2;8	Probable aquaporin PIP2.8, Probable aquaporin PIP2-8, Plasma membrane intrinsic protein 2-8	PLASMA MEMBRANE INTRINSIC PROTEIN 2;8		3	AC092263. Q7Y1E6. LOC_Os03g64330. OsPIP2-7 in Guo et al. 2006.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0861300	LOC_Os03g64330.1				GO:0055085 - transmembrane transport, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
8517	NIP1;1	OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1	NOD26 LIKE INTRINSIC PROTEIN 1;1	Aquaporin NIP1-1, NOD26-like intrinsic protein 1-1, rice Mip 1, major intrinsic protein 1, Nodulin 26	NOD26 LIKE INTRINSIC PROTEIN 1;1		2	AP004070. Q40746. D17443. D17443. LOC_Os02g13870. GO:1901684: arsenate ion transmembrane transport. TO:0006054: arsenic content trait.	 Biochemical character	Os02g0232900	LOC_Os02g13870.1				GO:0006810 - transport, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0005215 - transporter activity		PO:0020141 - stem node , PO:0008039 - stem base , PO:0009051 - spikelet , PO:0009005 - root 
8518	NIP1;2	OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2	NOD26 LIKE INTRINSIC PROTEIN 1;2	Aquaporin NIP1-2, NOD26-like intrinsic protein 1-2	NOD26 LIKE INTRINSIC PROTEIN 1;2		1	AP003105. Q0JPT5. LOC_Os01g10600.	 Biochemical character	Os01g0202800	LOC_Os01g10600.1				GO:0005215 - transporter activity, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8519	NIP1;3	OsNIP1;3, NIP1-3, OsNIP1.3, NIP1.3	NOD26 LIKE INTRINSIC PROTEIN 1;3	Aquaporin NIP1-3, NOD26-like intrinsic protein 1-3	NOD26 LIKE INTRINSIC PROTEIN 1;3		5	AC135918. Q0DK16. LOC_Os05g11560 (Os05g0205000/Os05g0205050).	 Biochemical character	Os05g0205000	LOC_Os05g11560.1				GO:0005215 - transporter activity, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8523	NIP3;1	OsNIP3;1, NIP3-1, OsNIP3.1, NIP3.1	NOD26 LIKE INTRINSIC PROTEIN 3;1	Aquaporin NIP3-1, NOD26-like intrinsic protein 3-1, nodulin 26-like intrinsic protein 3-1	NOD26 LIKE INTRINSIC PROTEIN 3;1	nip3;1-1, nip3;1-2	10	LOC_Os10g36924. AB856420. AC068924. Q0IWF3. GO:1901684: arsenate ion transmembrane transport. GO:0035445: borate transmembrane transport. TO:1000053: shoot system boron content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0513200	LOC_Os10g36924.1				GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0010036 - response to boron, GO:0005215 - transporter activity, GO:0009536 - plastid, GO:0016021 - integral to membrane		PO:0005004 - shoot node , PO:0005352 - xylem , PO:0000074 - parenchyma cell 
8524	NIP3;2	OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2	NOD26 LIKE INTRINSIC PROTEIN 3;2	Aquaporin NIP3-2, NOD26-like intrinsic protein 3-2	NOD26 LIKE INTRINSIC PROTEIN 3;2	nip3;2-1, nip3;2-2	8	AP005467. Q7EYH7. LOC_Os08g05590. GO:1901684: arsenate ion transmembrane transport. TO:1000026: root system arsenic content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0152000	LOC_Os08g05590.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0005215 - transporter activity, GO:0046685 - response to arsenic, GO:0015104 - antimonite transmembrane transporter activity		
8525	NIP3;3	OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3	NOD26 LIKE INTRINSIC PROTEIN 3;3	Aquaporin NIP3-3, NOD26-like intrinsic protein 3-3	NOD26 LIKE INTRINSIC PROTEIN 3;3		8	AP005467. Q84S07. LOC_Os08g05600. GO:1901684: arsenate ion transmembrane transport. TO:0006054: arsenic content trait.	 Biochemical character	Os08g0152100	LOC_Os08g05600.1				GO:0006810 - transport, GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0016021 - integral to membrane, GO:0016020 - membrane		
8526	NIP4;1	OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1	NOD26 LIKE INTRINSIC PROTEIN 4;1	Aquaporin NIP4-1, NOD26-like intrinsic protein 4-1	NOD26 LIKE INTRINSIC PROTEIN 4;1		1	AP003219. Q9ASI1. LOC_Os01g02190.	 Biochemical character	Os01g0112400	LOC_Os01g02190.1				GO:0016020 - membrane, GO:0005215 - transporter activity, GO:0006810 - transport, GO:0016021 - integral to membrane		
8527	SIP1;1	OsSIP1;1, SIP1-1	SMALL AND BASIC INTRINSIC PROTEIN 1;1	Aquaporin SIP1-1, Small basic intrinsic protein 1-1	SMALL AND BASIC INTRINSIC PROTEIN 1;1		1	AP003047. Q5VR89. LOC_Os01g08660.	 Biochemical character	Os01g0182200	LOC_Os01g08660.1				GO:0005215 - transporter activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0006810 - transport		
8528	SIP1;2	OsSIP1;2, OsSTA98	SMALL AND BASIC INTRINSIC PROTEIN 1;2		SMALL AND BASIC INTRINSIC PROTEIN 1;2		3	AC119748. LOC_Os03g20410. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0320000	LOC_Os03g20410.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016020 - membrane, GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0005215 - transporter activity		PO:0009066 - anther 
8529	MIR1425	OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p	MICRORNA1425	microRNA1425, osa-miRNA1425			5	miRBase accession: MI0006965. predicted targets: PPR proteins, confirmed target: Os10g0495200. target gene(s): RF-1. LM382873 LM380728	 Tolerance and resistance - Stress tolerance,  Other	Os05g0245700			0		GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
8530	MIR1428E	OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p	MICRORNA1428E	microRNA1428e, osa-miRNA1428e			3	miRBase accession: MI0008239. Stem-loop predicted structures for osa-miR1428e and osa-miR1428d found in AK102950 (Os03g0611100). miR1428e_3p targets Os08g37800 and Os03g17980 mRNAs, both encoding kinases of the sucrose nonfermenting-related kinase 1 (SnRK1) family (Zhu et al. 2008). EU563913-EU563916. Predicted target(s): Os03g0289100, Os12g0479300, Os08g0484600. LM381019.	 Other	Os03g0611100					GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
8531	miR1428.1	OsmiR1428.1, osa-miR1428.1	MICRORNA1428.1	microRNA1428.1, osa-miRNA1428.1			3	osa-miR1428.1 maps to an intron of gene Os03g0791800 which gives an mRNA (AK067703) coding for a conserved ubiquitin-carrier protein.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
8532	MIR2055	miR2055, OsmiR2055, osa-miR2055, osa-MIR2055	MICRORNA2055	microRNA1425, osa-miRNA1425			9	miRBASE accession: MI0010489. predicted targets: Os01g0871200, Os06g0484800, Os04g0629300, Os05g0560400, Os01g0323600.LM381193	 Other	Os09g0103400	LOC_Os09g01610.1				GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
8533	MIR159A	miR159a, osa-miR159a, osa-MIR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2	MICRORNA159A				1	miRBASE accession: MI0001092. predicted targets: Os03g0113500(a GT-2 like transcription factor), Os10g0516500 , confirmed target: Os10g0495200. AY551215. LM379305, LM381143.	 Other	Os01g0507000	LOC_Os01g32259.1				GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
8534	miR827	miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b	MICRORNA827	MICRORNA827a, MICRORNA827b, osa-miRNA827b			2	OsSPX-MFS1 and OsSPX-MFS2 are both negatively regulated by osa-miR827 abundance. miRBASE accession: MI0010490. miR827 was upregulated by phosphate starvation and strongly induced by the combined stress of salt stress under conditions of potassium starvation (Jeong et al. 2011). predicted target: Os03g0289100,  confirmed target: Os04g0573000 (Lacombe et al. 2008). TO:0020102: phosphate content. Osa-miR827a is encoded by a single locus mapping to an intergenic region on chromosome 2 (Lacombe et al. 2008).LM381194	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0016036 - cellular response to phosphate starvation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
8535	miR1874	OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p	MICRORNA1874				8	miRBASE accession: MI0008277. predicted to target Os04g0311100, Os10g0337400.LM381052	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
8536	GSL1	OsGSL1	BETA-1,3-GLUCANASE ACTIVITY 1	Oryza sativa callose synthase 1, callose synthase 1			6	LOC_Os06g02260. AP001389.	 Biochemical character	Os06g0112800/Os06g0113150					GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0016021 - integral to membrane, GO:0033903 - endo-1,3(4)-beta-glucanase activity, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0010266 - response to vitamin B1		PO:0009066 - anther , PO:0025034 - leaf , PO:0009005 - root 
8537	GSL2	OsGSL2	BETA-1,3-GLUCANASE ACTIVITY 2	Oryza sativa callose synthase 2, callose synthase 2			1		 Biochemical character	Os01g0672500	LOC_Os01g48200.1				GO:0003843 - 1,3-beta-glucan synthase activity, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0016021 - integral to membrane		PO:0009005 - root , PO:0025034 - leaf , PO:0009066 - anther 
8538	GSL3	OsGSL3	BETA-1,3-GLUCANASE ACTIVITY 3	Oryza sativa callose synthase 3, callose synthase 3			1		 Biochemical character	Os01g0754200	LOC_Os01g55040.1				GO:0003843 - 1,3-beta-glucan synthase activity, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0016021 - integral to membrane		
8539	GSL4	OsGSL4	BETA-1,3-GLUCANASE ACTIVITY 4	Oryza sativa callose synthase 4, callose synthase 4			1		 Biochemical character	Os01g0533500/Os01g0533800					GO:0000148 - 1,3-beta-glucan synthase complex, GO:0016021 - integral to membrane, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0003843 - 1,3-beta-glucan synthase activity		PO:0009005 - root , PO:0025034 - leaf , PO:0009066 - anther 
8540	GSL5	OsGSL5, OsSTA170	BETA-1,3-GLUCANASE ACTIVITY 5	Oryza sativa callose synthase 5, callose synthase 5, Glucan Synthase-Like 5			6	a mature anther-preferentially expressed gene. 	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0182300	LOC_Os06g08380.1				GO:0003843 - 1,3-beta-glucan synthase activity, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0016021 - integral to membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009066 - anther 
8541	GSL6	OsGSL6	BETA-1,3-GLUCANASE ACTIVITY 6	Oryza sativa callose synthase 6, callose synthase 6			6	LOC_Os06g51270.	 Biochemical character	Os06g0728800/Os06g0728902					GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0016021 - integral to membrane, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity		PO:0009066 - anther , PO:0009005 - root , PO:0025034 - leaf 
8542	GSL7	OsGSL7	BETA-1,3-GLUCANASE ACTIVITY 7	Oryza sativa callose synthase 7, callose synthase 7			2	LOC_Os02g58554/LOC_Os02g58560.	 Biochemical character	Os02g0832400/Os02g0832500					GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0016021 - integral to membrane, GO:0006075 - 1,3-beta-glucan biosynthetic process		PO:0025034 - leaf , PO:0009005 - root , PO:0009066 - anther 
8543	GSL8	OsGSL8, OsGSC, GSC, CRR1, OsCRR1	BETA-1,3-GLUCANASE ACTIVITY 8	"Oryza sativa callose synthase 8, callose synthase 8, \"1, 3-beta-glucan synthase component\", cannot reach the roof 1"		crr1	3	a protein homologous to the Arabidopsis callose synthases AtGSL8 and AtGSL10. GO:0035670: plant-type ovary development.	 Biochemical character,  Tolerance and resistance	Os03g0119500					GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0052543 - callose deposition in cell wall, GO:0009832 - plant-type cell wall biogenesis, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0016021 - integral to membrane	TO:0000696 - starch content, TO:0000291 - carbohydrate content	PO:0005020 - vascular bundle , PO:0009015 - portion of vascular tissue , PO:0009005 - root , PO:0009066 - anther , PO:0025034 - leaf 
8544	GSL9	OsGSL9	BETA-1,3-GLUCANASE ACTIVITY 9	Oryza sativa callose synthase 9, callose synthase 9			1		 Biochemical character	Os01g0533000/Os01g0533100	LOC_Os01g34900.1, LOC_Os01g34890.1, LOC_Os01g34880.1				GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0016021 - integral to membrane		PO:0009005 - root , PO:0009066 - anther , PO:0025034 - leaf 
8545	GSL10	OsGSL10	BETA-1,3-GLUCANASE ACTIVITY 10	Oryza sativa callose synthase 10, callose synthase 10			3		 Biochemical character	Os03g0128100/Os03g0128200	LOC_Os03g03610.3, LOC_Os03g03610.2, LOC_Os03g03610.1				GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0016021 - integral to membrane		PO:0009005 - root , PO:0009066 - anther , PO:0025034 - leaf 
8547	HSFA1	OsHsfA1, HSFA1, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a	HEAT STRESS TRANSCRIPTION FACTOR A1	Heat stress transcription factor A1, Heat stress transcription factor A-1, Heat stress transcription factor 13, Heat stress transcription factor 3	HEAT STRESS TRANSCRIPTION FACTOR A1		3	LOC_Os03g63750. AC120506. Q84T61.	 Tolerance and resistance - Stress tolerance	Os03g0854500	LOC_Os03g63750.1				GO:0006350 - transcription, GO:0006950 - response to stress, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0003700 - transcription factor activity		
8548	HSFA2A	HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e	HEAT STRESS TRANSCRIPTION FACTOR A2A	Heat stress transcription factor A2a, Heat stress transcription factor A-2a, Heat stress transcription factor 11, Heat stress transcription factor 4, Heat shock protein 41, Heat shock transcription factorA2	HEAT STRESS TRANSCRIPTION FACTOR A2a		3	LOC_Os03g53340. AC092558. Q84MN7. OsHsfA2e in Lavinia et al. 2018.	 Tolerance and resistance - Stress tolerance	Os03g0745000	LOC_Os03g53340.6, LOC_Os03g53340.5, LOC_Os03g53340.4, LOC_Os03g53340.3, LOC_Os03g53340.2, LOC_Os03g53340.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006950 - response to stress, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000429 - salt sensitivity	
8549	HSFA2B	HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, HSF5, OsHSF5	HEAT STRESS TRANSCRIPTION FACTOR A2B	Heat stress transcription factor A2b, Heat stress transcription factor A-2b, Heat stress transcription factor 18, Heat stress transcription factor 5	HEAT STRESS TRANSCRIPTION FACTOR A2b		7	LOC_Os07g08140. AP003826. Q6VBB2. AY344487.	 Tolerance and resistance - Stress tolerance	Os07g0178600	LOC_Os07g08140.1				GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
8550	HSFA2C	HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, HSF6, OsHsfA6a, HsfA6a	HEAT STRESS TRANSCRIPTION FACTOR A2C	Heat stress transcription factor A2c, Heat stress transcription factor A-2c, Heat stress transcription factor 25, Heat stress transcription factor 6	HEAT STRESS TRANSCRIPTION FACTOR A2c		10	LOC_Os10g28340. AC027658. Q338B0. AY344488. OsHSF6 in Liu et al. 2005. OsHsfA6a in Lavinia et al. 2018.	 Tolerance and resistance - Stress tolerance	Os10g0419300	LOC_Os10g28340.5, LOC_Os10g28340.3, LOC_Os10g28340.2, LOC_Os10g28340.1				GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0005737 - cytoplasm		
8551	HSFA2D	HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b	HEAT STRESS TRANSCRIPTION FACTOR A2D	Heat stress transcription factor A2d, Heat stress transcription factor A-2d, Heat stress transcription factor 8, Heat stress transcription factor 7	HEAT STRESS TRANSCRIPTION FACTOR A2d	hsfa2d	3	LOC_Os03g06630. AC105729. Q8H7Y6. AY344489. OsHsfA6b in Lavinia et al. 2018.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os03g0161900	LOC_Os03g06630.2, LOC_Os03g06630.1				GO:0005634 - nucleus, GO:0006986 - response to unfolded protein, GO:0003700 - transcription factor activity, GO:0009734 - auxin mediated signaling pathway, GO:0009629 - response to gravity, GO:0048571 - long-day photoperiodism, GO:0009408 - response to heat, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress, GO:0043565 - sequence-specific DNA binding, GO:0005737 - cytoplasm	TO:0000075 - light sensitivity, TO:0002693 - gravity response trait, TO:0000567 - tiller angle	
8552	HSFA2E	HSfA2e, OsHsfA2e, OsHsf-12, HSF12, OsHsfA2a, HsfA2a	HEAT STRESS TRANSCRIPTION FACTOR A2E	Heat stress transcription factor A2e, Heat stress transcription factor A-2e, Heat stress transcription factor 12	HEAT STRESS TRANSCRIPTION FACTOR A2e		3	LOC_Os03g58160. AC092076. Q6F388. OsHsfA2a in Lavania et al. 2018.	 Tolerance and resistance - Stress tolerance	Os03g0795900	LOC_Os03g58160.2, LOC_Os03g58160.1				GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005737 - cytoplasm, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
8553	HSFA3	HSfA3, OsHsfA3, OsHsf-07, HSF07	HEAT STRESS TRANSCRIPTION FACTOR A3	Heat stress transcription factor A3, Heat stress transcription factor A-3, Heat stress transcription factor 7	HEAT STRESS TRANSCRIPTION FACTOR A3		2	LOC_Os02g32590. AP004777. Q6H6Q7. 	 Tolerance and resistance - Stress tolerance	Os02g0527300	LOC_Os02g32590.2, LOC_Os02g32590.1				GO:0009409 - response to cold, GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000303 - cold tolerance	
8554	HSFA4A	OsHsfA4a, OsHsf-04, HSFA4B, HSF04, HSF9, OsHsfA4b, OsHSF9	HEAT STRESS TRANSCRIPTION FACTOR A4a	Heat stress transcription factor A4a, Heat stress transcription factor A-4b, Heat stress transcription factor 4, heat shock transcription factor 9	HEAT STRESS TRANSCRIPTION FACTOR A4a		1	LOC_Os01g54550. AP003076. Q94J16. AY344491.	 Tolerance and resistance - Stress tolerance	Os01g0749300	LOC_Os01g54550.1				GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0003677 - DNA binding, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
8556	HSFA5	HSfA5, OsHsfA5, OsHsf-06, HSF06	HEAT STRESS TRANSCRIPTION FACTOR A5	Heat stress transcription factor A5, Heat stress transcription factor A-5, Heat stress transcription factor 6	HEAT STRESS TRANSCRIPTION FACTOR A5		2	LOC_Os02g29340. AP004999. Q6K6S5.	 Tolerance and resistance - Stress tolerance	Os02g0496100	LOC_Os02g29340.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0005737 - cytoplasm, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress, GO:0043565 - sequence-specific DNA binding		
8557	HSFA6	HSfA6, OsHsfA6, OsHsf-17, HSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b	HEAT STRESS TRANSCRIPTION FACTOR A6	Heat stress transcription factor A6, Putative heat stress transcription factor A-6a, Heat stress transcription factor 17	HEAT STRESS TRANSCRIPTION FACTOR A6		6	LOC_Os06g36930. AP005456. Q5Z6A4. OsHsfA7b in Lavinia et al. 2018.	 Tolerance and resistance - Stress tolerance	Os06g0565200	LOC_Os06g36930.1				GO:0006950 - response to stress, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
8558	HSFA7	OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsEnS-9, OsHsfA7a, HsfA7a	HEAT STRESS TRANSCRIPTION FACTOR A7	Heat stress transcription factor A7, Heat stress transcription factor A-6a, Heat stress transcription factor 1, endosperm-specific gene 9	HEAT STRESS TRANSCRIPTION FACTOR A7		1	LOC_Os01g39020. Q657C0. AP003308. Heat shock transcription factor HSF8-like. OsHsfA7a in Lavinia et al. 2018.	 Tolerance and resistance - Stress tolerance	Os01g0571300	LOC_Os01g39020.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005739 - mitochondrion		
8559	HSFA9	HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, HSF8, OsHsfA8, HsfA8	HEAT STRESS TRANSCRIPTION FACTOR A9	Heat stress transcription factor A9, Heat stress transcription factor A-9, Heat stress transcription factor 9, Heat stress transcription factor 8	HEAT STRESS TRANSCRIPTION FACTOR A9		3	LOC_Os03g12370. AC107226. Q10PR4. AJ575240. OsHsfA8 in Lavinia et al. 2018.	 Seed,  Tolerance and resistance - Stress tolerance,  Other	Os03g0224700	LOC_Os03g12370.4, LOC_Os03g12370.3, LOC_Os03g12370.2, LOC_Os03g12370.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
8560	HSFB1	HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, TBF1	HEAT STRESS TRANSCRIPTION FACTOR B1	Heat stress transcription factor B1, Heat stress transcription factor B-1, Heat stress transcription factor 23	HEAT STRESS TRANSCRIPTION FACTOR B1		9	LOC_Os09g28354. AP006057. Q67TP9. HQ858829. HSF-BDB transcription factor.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0456800	LOC_Os09g28354.1				GO:0009817 - defense response to fungus, incompatible interaction, GO:0005737 - cytoplasm, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0009814 - defense response, incompatible interaction, GO:0034052 - positive regulation of plant-type hypersensitive response, GO:0043565 - sequence-specific DNA binding		
8561	HSFB2A	HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14	HEAT STRESS TRANSCRIPTION FACTOR B2A	Heat stress transcription factor B2a, Heat stress transcription factor B-2a, Heat stress transcription factor 14, Heat stress transcription factor 1	HEAT STRESS TRANSCRIPTION FACTOR B2a		4	LOC_Os04g48030. AL663003. Q7XRX3. AY344483.	 Tolerance and resistance - Stress tolerance	Os04g0568700	LOC_Os04g48030.1				GO:0005737 - cytoplasm, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress		
8562	HSFB2B	HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21	HEAT STRESS TRANSCRIPTION FACTOR B2B	Heat stress transcription factor B2b, Heat stress transcription factor B-2b, Heat stress transcription factor 21, Heat stress transcription factor 2	HEAT STRESS TRANSCRIPTION FACTOR B2b		8	LOC_Os08g43334. AP004163. Q6Z9C8.	 Tolerance and resistance - Stress tolerance	Os08g0546800	LOC_Os08g43334.2, LOC_Os08g43334.1				GO:0009411 - response to UV, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0043565 - sequence-specific DNA binding	TO:0000160 - UV light sensitivity	
8563	HSFB2C	HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24	HEAT STRESS TRANSCRIPTION FACTOR B2C	Heat stress transcription factor B2c, Heat stress transcription factor B-2c, Heat stress transcription factor 24	HEAT STRESS TRANSCRIPTION FACTOR B2c		9	LOC_Os09g35790. AP005681. Q652B0.	 Tolerance and resistance - Stress tolerance	Os09g0526600	LOC_Os09g35790.3, LOC_Os09g35790.2, LOC_Os09g35790.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0006350 - transcription	TO:0000259 - heat tolerance	
8564	HSFB4A	HSfB4a, OsHsfB4a, OsHsf-20, HSF20	HEAT STRESS TRANSCRIPTION FACTOR B4A	Heat stress transcription factor B4a, Putative heat stress transcription factor B-4a, Heat stress transcription factor 20	HEAT STRESS TRANSCRIPTION FACTOR B4a		8	LOC_Os08g36700. AP004693. Q6Z9R8.	 Tolerance and resistance - Stress tolerance	Os08g0471000	LOC_Os08g36700.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0006950 - response to stress		
8565	HSFB4B	HSFB4b, OsHSFB4b, OsHsf-19, rHsf12, OsHSF12, HSF12, HSF19	HEAT STRESS TRANSCRIPTION FACTOR B4B	Heat stress transcription factor B4b, Heat stress transcription factor B-4b, Heat stress transcription factor 19, Heat stress transcription factor 12	HEAT STRESS TRANSCRIPTION FACTOR B4b		7	LOC_Os07g44690. AP005292. Q7XHZ0. AY344494. OsHSF12 in Liu et al. 2005.	 Tolerance and resistance - Stress tolerance	Os07g0640900	LOC_Os07g44690.1				GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent		
8566	HSFB4C	HSfB4c, OsHsfB4c, OsHsf-22, HSF22	HEAT STRESS TRANSCRIPTION FACTOR B4C	Heat stress transcription factor B4c, Heat stress transcription factor B-4c, Heat stress transcription factor 22	HEAT STRESS TRANSCRIPTION FACTOR B4c		9	LOC_Os09g28200. AP005655. Q67U94.	 Tolerance and resistance - Stress tolerance	Os09g0455200	LOC_Os09g28200.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0006950 - response to stress, GO:0005634 - nucleus, GO:0005737 - cytoplasm		
8567	HSFB4D	OsHsfB4d, HSfB4d, OsHsf-10, HSF10	HEAT STRESS TRANSCRIPTION FACTOR B4D	Heat stress transcription factor B4d, HEAT STRESS TRANSCRIPTION FACTOR B4d, Heat stress transcription factor 10	HEAT STRESS TRANSCRIPTION FACTOR B4d		3	LOC_Os03g25120. AC125784. Q10KX8.	 Tolerance and resistance - Stress tolerance	Os03g0366800	LOC_Os03g25120.1				GO:0006350 - transcription, GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
8568	HSFC1A	HSfC1a, OsHsfC1a, OsHsf-02, rHsf13, HSF02, HSF13	HEAT STRESS TRANSCRIPTION FACTOR C1A	Heat stress transcription factor C1a, Heat stress transcription factor C-1a, Heat stress transcription factor 2, Heat stress transcription factor 13	HEAT STRESS TRANSCRIPTION FACTOR C1a		1	LOC_Os01g43590. AP002744. Q6VBA4.	 Tolerance and resistance - Stress tolerance	Os01g0625300	LOC_Os01g43590.2, LOC_Os01g43590.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
8569	HSFC1B	OsHsfC1b, HsfC1b, HSF03, OsHsf-03, HSF11, rHsf11	HEAT STRESS TRANSCRIPTION FACTOR C1b	Heat stress transcription factor C1b, Heat stress transcription factor C-1b, Heat stress transcription factor 3	HEAT STRESS TRANSCRIPTION FACTOR C1b	hsfc1b	1	LOC_Os01g53220. AP003309. Q942D6.	 Tolerance and resistance - Stress tolerance	Os01g0733200	LOC_Os01g53220.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
8570	HSFC2A	HSfC2a, OsHsfC2a, OsHsf-05, HSF05	HEAT STRESS TRANSCRIPTION FACTOR C2A	Heat stress transcription factor C2a, Heat stress transcription factor C-2a, Heat stress transcription factor 5	HEAT STRESS TRANSCRIPTION FACTOR C2a		2	LOC_Os02g13800. AP004070. Q6EUG4.	 Tolerance and resistance - Stress tolerance	Os02g0232000	LOC_Os02g13800.1				GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
8571	HSFC2B	HSfC2b, OsHsfC2b, OsHsf-16, HSF16	HEAT STRESS TRANSCRIPTION FACTOR C2B	Heat stress transcription factor C2b, Heat stress transcription factor C-2b, Heat stress transcription factor 16	HEAT STRESS TRANSCRIPTION FACTOR C2b		6	LOC_Os06g35960. AP003682. Q0DBL6.	 Tolerance and resistance - Stress tolerance	Os06g0553100	LOC_Os06g35960.1				GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus		
8572	C3H1	OsC3H1, OsEnS-1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1	Zinc finger CCCH domain-containing protein 1, endosperm-specific gene 1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1		1	LOC_Os01g07930. Q5VR07.	 Other	Os01g0174600	LOC_Os01g07930.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8573	C3H10	OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 10	Zinc finger CCCH domain-containing protein 10, Tandem zinc finger protein 8, endosperm-specific gene 12	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 10		1	LOC_Os01g53650. Q94JI5.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0738400	LOC_Os01g53650.1				GO:0003676 - nucleic acid binding, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8574	C3H11	OsC3H11	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 11	Zinc finger CCCH domain-containing protein 11	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 11		1	Os01g0834700. Q0JHZ2.	 Other	Os01g0834700	LOC_Os01g61830.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005739 - mitochondrion		
8575	C3H12	OsC3H12	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12	Zinc finger CCCH domain-containing protein 12, Zinc finger CCCH domain-containing protein ZFN-like 2	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12		1	LOC_Os01g68860. Q5JLB5. JF799943.	 Tolerance and resistance - Disease resistance,  Other	Os01g0917400	LOC_Os01g68860.3, LOC_Os01g68860.2, LOC_Os01g68860.1				GO:0008270 - zinc ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0003677 - DNA binding	TO:0000615 - abscisic acid sensitivity	
8576	C3H13 	OsC3H13, BIP105	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13	Zinc finger CCCH domain-containing protein 13, BRI1-kinase domain-interacting protein 105, brassinosteroid receptor kinase (BRI1)-interacting protein 105, BRI1-interacting protein 105, brassinosteroid receptor kinase-interacting protein 105	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13		2	Q6H7U2. AB117992.	 Other	Os02g0161200	LOC_Os02g06584.4, LOC_Os02g06584.3, LOC_Os02g06584.2				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8577	C3H14	OsC3H14	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14	Zinc finger CCCH domain-containing protein 14	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14		2	Os02g0194200. Q7F8R0.	 Other	Os02g0194200	LOC_Os02g10080.2, LOC_Os02g10080.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0003723 - RNA binding		
8578	C3H15	OsC3H15, OsRFPHC-3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15	Zinc finger CCCH domain-containing protein 15, RING finger protein OsRFPHC-3, RING-HC protein 3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15		2	Os02g0301000. Q6K4V3.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0301000	LOC_Os02g19804.1				GO:0008270 - zinc ion binding, GO:0005515 - protein binding, GO:0003677 - DNA binding	TO:0000168 - abiotic stress trait	
8579	C3H16	OsC3H16	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16	Zinc finger CCCH domain-containing protein 16	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16		2	Os02g0557500. Q6YVX9.	 Other	Os02g0557500	LOC_Os02g35150.1				GO:0000166 - nucleotide binding, GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8580	C3H17	OsC3H17, OsWD40-49	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 17	Zinc finger CCCH domain-containing protein 17	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 17		2	Q0DYP5.	 Other	Os02g0677700	LOC_Os02g45480.4, LOC_Os02g45480.3, LOC_Os02g45480.2, LOC_Os02g45480.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8581	C3H18	OsC3H18	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18	Zinc finger CCCH domain-containing protein 18	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18		2	Os02g0793000, Q6K687.	 Other	Os02g0793000	LOC_Os02g55000.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005622 - intracellular		
8582	C3H19	OsC3H19	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19	Zinc finger CCCH domain-containing protein 19	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19		2	Os02g0831100. Q6K977.	 Other	Os02g0831100	LOC_Os02g58440.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8584	EHD4	OsC3H20, C3H20, Ehd4	EARLY HEADING DATE 4	Zinc finger CCCH domain-containing protein 20, Early heading date 4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	ehd4	3	LOC_Os03g02160. Q0DVU4. JQ828863.	 Reproductive organ - Heading date,  Other	Os03g0112700	LOC_Os03g02160.3, LOC_Os03g02160.2, LOC_Os03g02160.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:2000028 - regulation of photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0002616 - flowering time	
8585	C3H21	OsC3H21	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21	zinc finger CCCH domain-containing protein 21	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21		3	Q10MN8. GO:0061158: 3'-UTR-mediated mRNA destabilization.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0301500	LOC_Os03g18950.1				GO:0003677 - DNA binding, GO:0046688 - response to copper ion, GO:0008270 - zinc ion binding, GO:0003730 - mRNA 3'-UTR binding, GO:0046872 - metal ion binding, GO:0005829 - cytosol	TO:0000021 - copper sensitivity	
8586	C3H22	OsC3H22	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22	Zinc finger CCCH domain-containing protein 22	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22		3	Os03g0328900. Q10M00.	 Other	Os03g0328900	LOC_Os03g21140.2, LOC_Os03g21140.1				GO:0003723 - RNA binding, GO:0003677 - DNA binding, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding		
8587	C3H23	OsC3H23	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 23	Zinc finger CCCH domain-containing protein 23	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 23		3	Os03g0329200. Q10LZ9.	 Other	Os03g0329200	LOC_Os03g21160.2, LOC_Os03g21160.1				GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0003677 - DNA binding		
8588	C3H24	OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 24	Zinc finger CCCH domain-containing protein 24, Tandem zinc finger protein 3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 24		3	LOC_Os03g49170.1 Q10EL1.	 Tolerance and resistance - Disease resistance,  Other	Os03g0698800	LOC_Os03g49170.3, LOC_Os03g49170.1				GO:0003677 - DNA binding, GO:0051607 - defense response to virus, GO:0008270 - zinc ion binding	TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance	
8589	C3H25	OsC3H25	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 25	Zinc finger CCCH domain-containing protein 25	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 25		3	Os03g0826400. Q10B98.	 Other	Os03g0826400	LOC_Os03g61110.1				GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0003677 - DNA binding		
8590	C3H26	OsC3H26	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26	tRNA-dihydrouridine synthase 3-like, Zinc finger CCCH domain-containing protein 26	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26		4	Zinc finger CCCH domain-containing protein 26. Os04g0117600. EC=1.-.-.- Q7XT07.	 Other	Os04g0117600	LOC_Os04g02730.1				GO:0050660 - FAD binding, GO:0008033 - tRNA processing, GO:0009536 - plastid, GO:0017150 - tRNA dihydrouridine synthase activity, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0055114 - oxidation reduction		
8591	C3H27	OsC3H27	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 27	Zinc finger CCCH domain-containing protein 27	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 27		4	Os04g0394300. Q0JDM0.	 Other	Os04g0394300	LOC_Os04g32340.1				GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0003723 - RNA binding		
8592	C3H28	OsC3H28	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 28	Zinc finger CCCH domain-containing protein 28	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 28		4	Os04g0438700. Q0JD07.	 Other	Os04g0438700	LOC_Os04g35800.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8593	C3H29	OsC3H29, OsCCCH-Zn-9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29	Putative zinc finger CCCH domain-containing protein 29	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29		4	LOC_Os04g41060. Q7XSB2.	 Other	Os04g0487550	LOC_Os04g41060.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8594	C3H3	OsC3H3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3	Zinc finger CCCH domain-containing protein 3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3		1	Q0JP11.	 Other	Os01g0252200	LOC_Os01g14870.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8595	C3H30	OsC3H30	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 30	Zinc finger CCCH domain-containing protein 30	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 30		4	Os04g0663200. Q7XM16.	 Other	Os04g0663200	LOC_Os04g56750.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8596	C3H31	OsC3H31	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 31	Zinc finger CCCH domain-containing protein 31	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 31		4	Os04g0665700. Q7XPK1.	 Other	Os04g0665700	LOC_Os04g57010.2, LOC_Os04g57010.1				GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8597	C3H32	OsC3H32	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32	Zinc finger CCCH domain-containing protein 32	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32		4	Q0J952. HQ858841. C3H-related transcription factor.	 Other	Os04g0671800	LOC_Os04g57600.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8598	C3H33	OsC3H33, OsTZF5, OsCCCH-Zn-5	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33	Zinc finger CCCH domain-containing protein 33, Tandem zinc finger protein 5	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33		5	Os05g0128200. Q688R3.	 Other	Os05g0128200	LOC_Os05g03760.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8599	C3H34	OsC3H34	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 34	Zinc finger CCCH domain-containing protein 34	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 34		5	Os05g0176400. Q6AT25.	 Other	Os05g0176400	LOC_Os05g08400.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8600	C3H35	OsC3H35, OsTZF1, OsCCCH-Zn-3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 35	Zinc finger CCCH domain-containing protein 35, Protein DELAY OF THE ONSET OF SENESCENCE-like, Tandem zinc finger protein 1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 35		5	Q6L4N4.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0195200	LOC_Os05g10670.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8601	C3H36	OsC3H36	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 36	Zinc finger CCCH domain-containing protein 36	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 36		5	Os05g0497500. Q75K81.	 Other	Os05g0497500	LOC_Os05g41790.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8602	C3H37	OsC3H37, OsTZF7, OsCCCH-Zn-1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37	Zinc finger CCCH domain-containing protein 37, Tandem zinc finger protein 7	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37		5	Os05g0525900. Q65X92.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0525900	LOC_Os05g45020.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8603	C3H38  	OsC3H38, U2AF35B, OsU2AF35b	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38	Splicing factor U2af small subunit B, U2 small nuclear ribonucleoprotein auxiliary factor small subunit B, U2 snRNP auxiliary factor small subunit B, U2 auxiliary factor 35 kDa subunit B, Zinc finger CCCH domain-containing protein 38, U2 snRNP auxiliary factor small subunit B, U2 auxiliary factor 35 kDa subunit B, U2 Small Nuclear Ribonucleoprotein Auxiliary Factor U2AF Subunit 35b	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38		5	Q6AUG0. Y18348.	 Other	Os05g0564200	LOC_Os05g48960.4, LOC_Os05g48960.3, LOC_Os05g48960.2, LOC_Os05g48960.1				GO:0003677 - DNA binding, GO:0006397 - mRNA processing, GO:0008270 - zinc ion binding, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0008380 - RNA splicing, GO:0000166 - nucleotide binding		
8604	C3H39	OsC3H39	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	Zinc finger CCCH domain-containing protein 39	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39		5	Os05g0576300. Q6L5G1.	 Other	Os05g0576300	LOC_Os05g50080.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8605	C3H4	OsC3H4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 4	Zinc finger CCCH domain-containing protein 4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 4		1	Os01g0256800. EC=3.6.1.- Q1EHT7.	 Other	Os01g0256800	LOC_Os01g15300.2, LOC_Os01g15300.1				GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0008270 - zinc ion binding		
8606	C3H40	OsC3H40	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40	Zinc finger CCCH domain-containing protein 40	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40		6	LOC_Os06g07350.1. Q5SNN4. RNA-binding motif protein.	 Other	Os06g0170500	LOC_Os06g07350.1				GO:0003723 - RNA binding, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding		
8607	C3H41	OsC3H41, MKRN	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41	E3 ubiquitin-protein ligase makorin, Zinc finger CCCH domain-containing protein 41	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41		6	LOC_Os06g21390. EC=6.3.2.- Q5ZA07. OsRFP (RING finger protein).	 Tolerance and resistance - Stress tolerance,  Other	Os06g0318700	LOC_Os06g21390.4, LOC_Os06g21390.3, LOC_Os06g21390.2, LOC_Os06g21390.1				GO:0005515 - protein binding, GO:0046685 - response to arsenic, GO:0003677 - DNA binding, GO:0019941 - modification-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity		
8608	C3H42	OsC3H42	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 42	Zinc finger CCCH domain-containing protein 42	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 42		6	Os06g0519400. Q0DBW8.	 Other	Os06g0519400	LOC_Os06g32720.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0009536 - plastid		
8609	C3H43	OsC3H43	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43	Zinc finger CCCH domain-containing protein 43	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43		6	Os06g0520600. Q5Z5Q3.	 Other	Os06g0520600	LOC_Os06g32860.2, LOC_Os06g32860.1				GO:0005515 - protein binding, GO:0008270 - zinc ion binding, GO:0016070 - RNA metabolic process, GO:0003677 - DNA binding		
8610	C3H44	OsC3H44	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44	Zinc finger CCCH domain-containing protein 44	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44		6	Os06g0618100. Q69XQ3.	 Other	Os06g0618100	LOC_Os06g41384.2, LOC_Os06g41384.1				GO:0008270 - zinc ion binding, GO:0003723 - RNA binding, GO:0003677 - DNA binding		
8611	C3H45	OsC3H45	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45	Zinc finger CCCH domain-containing protein 45	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45		6	Os06g0677700. Q0DA50.	 Other	Os06g0677700	LOC_Os06g46400.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8612	 LIC	OsC3H46, C3H46, OsLIC	LEAF AND TILLER ANGLE INCREASED CONTROLLER	Zinc finger CCCH domain-containing protein 46, LEAF and TILLER ANGLE INCREASED CONTROLLER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 46	lic-1	6	LOC_Os06g49080. Q5Z807. OsLIC is a negative regulator of the BR response. OsLIC is epistatic to d2-1, while d61-1 is epistatic to OsLIC.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Other	Os06g0704300	LOC_Os06g49080.1				GO:0008270 - zinc ion binding, GO:0009742 - brassinosteroid mediated signaling, GO:0003677 - DNA binding, GO:0005739 - mitochondrion	TO:0000206 - leaf angle, TO:0000445 - seed number, TO:0000567 - tiller angle, TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity	
8613	C3H47	OsC3H47, OsCCCH-Zn-10	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 47	Zinc finger CCCH domain-containing protein 47	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 47		7	Q8GW05.	 Other	Os07g0138400	LOC_Os07g04580.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8614	C3H48	OsC3H48	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48	Putative zinc finger CCCH domain-containing protein 48	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48		7	Os07g0139000. Q8GVZ8.	 Other	Os07g0139000	LOC_Os07g04650.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8615	C3H49	OsC3H49	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49	Zinc finger CCCH domain-containing protein 49	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49		7	Os07g0281000. Q6Z358.	 Other	Os07g0281000	LOC_Os07g18050.1				GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0003677 - DNA binding		
8616	C3H5	OsC3H5	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 5	Zinc finger CCCH domain-containing protein 5, Zinc finger CCCH domain-containing protein ZFN-like 3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 5		1	Os01g0257400. Q5NAV3.	 Other	Os01g0257400	LOC_Os01g15350.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8617	C3H50	OsC3H50, OsTZF6, OsCCCH-Zn-6	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 50	Zinc finger CCCH domain-containing protein 50, Protein ZF, Tandem zinc finger protein 6	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 50		7	AJ575241. Q84SL2.	 Seed,  Tolerance and resistance - Stress tolerance,  Other	Os07g0568300	LOC_Os07g38090.2, LOC_Os07g38090.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
8618	C3H51	OsC3H51	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 51	Putative zinc finger CCCH domain-containing protein 51	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 51		7	Os07g0583300. Q84ZT0.	 Other	Os07g0583300	LOC_Os07g39440.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0003723 - RNA binding, GO:0000166 - nucleotide binding		
8619	C3H53	OsC3H53	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53	Zinc finger CCCH domain-containing protein 53	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53		7	Os07g0682400. Q0D3J9.	 Other	Os07g0682400	LOC_Os07g48410.2, LOC_Os07g48410.1				GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0003677 - DNA binding		
8620	C3H54	OsC3H54	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54	Zinc finger CCCH domain-containing protein 54	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54		8	Os08g0126700. Q6ZK57.	 Other	Os08g0126700	LOC_Os08g03310.6, LOC_Os08g03310.5, LOC_Os08g03310.4, LOC_Os08g03310.3, LOC_Os08g03310.2, LOC_Os08g03310.1				GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8621	C3H55	OsC3H55	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55	Zinc finger CCCH domain-containing protein 55	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55		8	Os08g0135800. Q6YYC0.	 Other	Os08g0135800	LOC_Os08g04170.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8622	C3H56	OsC3H56	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56	Zinc finger CCCH domain-containing protein 56	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56		8	Os08g0159800. Q84UQ3.	 Other	Os08g0159800	LOC_Os08g06330.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8623	C3H57	OsC3H57	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 57	Putative zinc finger CCCH domain-containing protein 57	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 57		8	Os08g0491700. A3BUD2.	 Other	Os08g0491700	LOC_Os08g38370.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8624	C3H58	OsC3H58	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58	Putative zinc finger CCCH domain-containing protein 58	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58		9	Os09g0305900. Q69KP0.	 Other	Os09g0305900	LOC_Os09g13530.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8625	C3H59	OsC3H59	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 59	Zinc finger CCCH domain-containing protein 59	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 59		9	Os09g0364000. Q69NK8.	 Other	Os09g0364000	LOC_Os09g19940.2, LOC_Os09g19940.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0003824 - catalytic activity		
8626	C3H6	OsC3H6	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6	Zinc finger CCCH domain-containing protein 6, Zinc finger CCCH domain-containing protein ZFN-like 1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6		1	Os01g0258700. Q5NAW2.	 Other	Os01g0258700	LOC_Os01g15460.3, LOC_Os01g15460.2, LOC_Os01g15460.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005634 - nucleus		
8627	C3H60 	OsC3H60, U2AF35a, U2AF35A, OsU2AF35a	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 60	"Splicing factor U2af small subunit A, U2 snRNP auxiliary factor small subunit A, U2 auxiliary factor 35 kDa subunit A, Zinc finger CCCH domain-containing protein 60, \"U2 snRNP auxiliary factor, small subunit\", U2 small nuclear ribonucleoprotein auxiliary factor small subunit A, U2 Small Nuclear Ribonucleoprotein Auxiliary Factor U2AF Subunit 35a"	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 60		9	U2 small nuclear ribonucleoprotein auxiliary factor small subunit A.  Y18349. Q9ZQW8.	 Other	Os09g0491756	LOC_Os09g31482.3, LOC_Os09g31482.1				GO:0005634 - nucleus, GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0003723 - RNA binding, GO:0003677 - DNA binding, GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding		
8628	C3H62	OsC3H62	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62	Zinc finger CCCH domain-containing protein 62	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62		10	Os10g0391300. Q338N2.	 Other	Os10g0391300	LOC_Os10g25220.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8629	C3H63	OsC3H63	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 63	Zinc finger CCCH domain-containing protein 63	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 63		11	Os11g0472000. Q2R4J4.	 Other	Os11g0472000	LOC_Os11g28270.3, LOC_Os11g28270.2, LOC_Os11g28270.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8630	C3H65	OsC3H65	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 65	Zinc finger CCCH domain-containing protein 65	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 65		12	Os12g0278800. Q2QTY2.	 Other	Os12g0278800	LOC_Os12g18120.4, LOC_Os12g18120.2, LOC_Os12g18120.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8631	C3H66	OsC3H66	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66	Zinc finger CCCH domain-containing protein 66	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66		12	Os12g0405100. Q2QT65.	 Other	Os12g0405100	LOC_Os12g21700.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8632	C3H67	OsC3H67, OsTZF4, OsCCCH-Zn-7	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 67	Zinc finger CCCH domain-containing protein 67, Tandem zinc finger protein 4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 67		12	Os12g0515500. Q2QPW2.	 Other	Os12g0515500	LOC_Os12g33090.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8633	C3H7	OsC3H7	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7	Zinc finger CCCH domain-containing protein 7	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7		1	Os01g0572100. Q657B3.	 Other	Os01g0572100	LOC_Os01g39100.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8634	C3H8	OsC3H8	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8	Zinc finger CCCH domain-containing protein 8	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8		1	Os01g0616400. Q5ZDJ6.	 Other	Os01g0616400	LOC_Os01g42970.2, LOC_Os01g42970.1				GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8635	C3H9	OsC3H9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 9	Zinc finger CCCH domain-containing protein 9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 9		1	Os01g0645000. A2ZVY5.	 Other	Os01g0645000	LOC_Os01g45730.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8638	S30 	S30-i, S30-j, S30-n	HYBRID SPIKELET STERILITY 30				7	Data on F1 fertility, segregation distortion in BC1F1 derived from IR36/Ludao//IR36 and linkage analysis are reported.  Semi-sterility expressed as an allelic interaction such as S30-i / S30-j. Segregation distortion in BC1F1 due to the abortion of female gametes having S30-j . O. sativa cv. IR36(S30-i), Ludao(S30-j) and N22(S30-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
8639	S31	S31-gi, S31-un, S31-n, S31(t)	HYBRID SPIKELET STERILITY 31				5	Data on F1 fertility, segregation distortion in BC1F1 derived from USSR5/Guangjie9//USSR5 and linkage analysis are reported.Semi-sterility expressed as an allelic interaction such as S31-un / S31-gi. Segregation distortion in BC1F1 due to the abortion of female gametes having S31-un .O. sativa cv. Guangjie 9 (S31-gi), USSR5 (S31-un) and Dular(S31-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
8640	S32	S32-kn, S32-ti, S32-n, S32(t)(=qSS2)	HYBRID SPIKELET STERILITY 32	hybrid sterility			2	Data on F1 fertility, segregation distortion in BC1F1 derived from Tuanguzao/ Ketan Nangka //Ketan Nangka and linkage analysis are reported. Semi-sterility expressed as an allelic interaction such as S32-kn / S32-ti . Segregation distortion in BC1F1 due to the abortion of female gametes having S32-n  O. sativa cv. Ketan Nangka(S32-kn), Tuanguzao(S32-ti) and Dular(S32-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
8641	S33	S33-id, S33-j., S33-n	HYBRID SPIKELET STERILITY 33				3	Data on F1 fertility, segregation distortion in BC1F1 derived from Akihikari//Ludao/Akihikari and linkage analysis are reported.Pollen semi-sterility expressed as an allelic interaction such as S33-id / S33-j. Segregation distortion in BC1F1 due to the abortion of male gametes having S33-id .O. sativa weedy strain Ludao (S33-id), cv. Akihikari (S33-j) and 02428 (S33-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
8642	S34	S34-id, S34-j., S34-n, S34(t)	HYBRID SPIKELET STERILITY 34				11	Data on F1 fertility, segregation distortion in BC1F1 derived from Akihikari//Ludao/Akihikari and linkage analysis are reported. Pollen semi-sterility expressed as an allelic interaction such as S34-id / S34-j. Segregationdistortion in BC1F1 due to the abortion of male gametes having S34-id O. sativa weedy strain Ludao (S34-id), cv. Akihikari (S34-j) and 02428 (S34-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
8643	PSS1	pss1, OsPSS1	POLLEN SEMI-STERILITY 1 	pollen semi-sterility 1, pollen semi-sterile 1, Pollen semi-sterility1		pss1	8	Data on genetic analysis and fine mapping of pss1 are reported.The female gamete of mutant W207-2 was normal, and its semi-sterility was unaffected by growth duration but was conditioned by a recessive nuclear gene whose action leads to pollen semi-sterility and anther indehiscence. O. sativa cv. Nipponbare. AP004562. PSS1 encodes a kinesin-1-like protein. BK007977. F9W301.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os08g0117000	LOC_Os08g02380.2, LOC_Os08g02380.1	GR:0101187			GO:0005524 - ATP binding, GO:0007018 - microtubule-based movement, GO:0003777 - microtubule motor activity, GO:0005874 - microtubule, GO:0005871 - kinesin complex, GO:0007126 - meiosis, GO:0005737 - cytoplasm, GO:0009901 - anther dehiscence	TO:0000053 - pollen sterility	
8644	LGC2		LOW GLUTELIN CONTENT 2				2	Data on genetic analysis, linkage analysis and the marker-assisted selection accuracy are reported. With a low glutelin content and a high prolamine content in rice seeds.O. sativa cv. W3660 	 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
8645	ZFP245	OsZFP245	ZINC FINGER PROTEIN 245	zinc finger protein ZFP245	ZINC FINGER PROTEIN 245		7	AY395294.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0588700	LOC_Os07g39970.1		0		GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0046872 - metal ion binding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0009738 - abscisic acid mediated signaling	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity	
8646	ZFP252	RZF71	ZINC FINGER PROTEIN 252		ZINC FINGER PROTEIN 252		12	AY219847	 Tolerance and resistance - Stress tolerance,  Other	Os12g0583700	LOC_Os12g39400.1		0		GO:0008270 - zinc ion binding, GO:0003677 - DNA binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
8647	ONG1		ALPHA-GLUCOSIDASE 1	Alpha-D-glucoside glucohydrolase 1	ALPHA-GLUCOSIDASE 1		6	AP004989	 Biochemical character				0		GO:0004558 - alpha-glucosidase activity		
8648	ONG2		ALPHA-GLUCOSIDASE 2	Alpha-D-glucoside glucohydrolase 2	ALPHA-GLUCOSIDASE 2		6	AP003728, Two isoforms (ONG2-I and ONG2-II) are produced by post-translational proteolysis.	 Biochemical character				0		GO:0004558 - alpha-glucosidase activity		
8649	ONG4		ALPHA-GLUCOSIDASE 4	Alpha-D-glucoside glucohydrolase 4	ALPHA-GLUCOSIDASE 4		1	AP002526	 Biochemical character				0		GO:0004558 - alpha-glucosidase activity		
8650	ONG3		ALPHA-GLUCOSIDASE 3	Alpha-D-glucoside glucohydrolase 3	ALPHA-GLUCOSIDASE 3		6	mRNAs of ONG2 and ONG3 are formed by alternative splicing.	 Biochemical character				0		GO:0004558 - alpha-glucosidase activity		
8651	ERF3	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 3	Apetela2 transcription factor 37, ethylene response factor 3, Ethylene responsive factor 3, ethylene response factor 75, APETALA2/ethylene-responsive element binding protein 4, benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 2, benzothiadiazole-induced ethylene responsive transcriptional factor 2, BTH-induced ethylene responsive transcriptional factor 2, ethylene-responsive element binding factor 3, APETALA37	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 3		1	LOC_Os01g58420, AB036883. AAV98701.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other	Os01g0797600	LOC_Os01g58420.1		0		GO:0009651 - response to salt stress, GO:0010366 - negative regulation of ethylene biosynthetic process, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009873 - ethylene mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009736 - cytokinin mediated signaling, GO:0048364 - root development	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000164 - stress trait, TO:0000173 - ethylene sensitivity, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000371 - yield trait	PO:0000043 - crown root , PO:0007518 - crown root emergence stage 
8652	ERF91	OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3	ETHYLENE RESPONSE FACTOR 91	Apetela2 transcription factor 59, ethylene response factor 91, ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 91, APETALA2/ethylene-responsive element binding protein 147, benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 3, benzothiadiazole-induced ethylene responsive transcriptional factor 3, BTH-induced ethylene responsive transcriptional factor 3, BTH-induced ERF transcriptional factor 3	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 91	ETHYLENE RESPONSE FACTOR 91	2	LOC_Os02g43790. CAC39058. AY831394.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0654700	LOC_Os02g43790.1		0		GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0009620 - response to fungus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000164 - stress trait, TO:0000276 - drought tolerance	
8653	SNK1	SK1	SNORKEL 1	SNORKEL1	ETHYLENE RESPONSE FACTOR		12	Major QTL regulates deepwater response,AB510478(O. sativa Indica, C9285), AB510480(O. sativa Indica, Bhadua), AB510482(O. rufipogon, W0120), AB510484(O. nivara, W0106)	 Tolerance and resistance - Stress tolerance,  Character as QTL				0		GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
8654	SNK2	SK2	SNORKEL 2	SNORKEL2	ETHYLENE RESPONSE FACTOR		12	Major QTL regulates deepwater response, AB510479(O. sativa Indica, C9285), AB510481(O. sativa Indica, Bhadua), AB510483(O. rufipogon, W0120), AB510485(O. nivara, W0106), AB510486(O. glumipatula, IRGC105668), AB510487(O. glumipatula, IRGC105668)	 Tolerance and resistance - Stress tolerance,  Character as QTL				0		GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0030912 - response to deep water, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
8655	LCS	OsHAK1, HAK1	LOW CS ACCUMULATION	High-affinity Potassium(K+) Transporter 1, Potassium transporter 1, low Cs accumulation	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 1 	lcs, lcs-1, lcs-2, lcs-3	4	LOC_Os04g32920. AJ427970, AY324878. KT-HAK-KUP family of transporters. Q6VVA6.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os04g0401700	LOC_Os04g32920.5, LOC_Os04g32920.4, LOC_Os04g32920.3, LOC_Os04g32920.2, LOC_Os04g32920.1				GO:0051365 - cellular response to potassium ion starvation, GO:0006813 - potassium ion transport, GO:0005886 - plasma membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009674 - potassium:sodium symporter activity, GO:0030955 - potassium ion binding	TO:0000207 - plant height	
8656	HAK2	OsHAK2	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 2	High-affinity Potassium(K+) Transporter 2, Probable potassium transporter 2	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 2		1	AK070575, AK071411. KT-HAK-KUP family of transporters. Q942X8.	 Biochemical character	Os01g0935500	LOC_Os01g70940.3, LOC_Os01g70940.2, LOC_Os01g70940.1				GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane		
8657	HAK3	OsHAK3	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 3	High-affinity Potassium(K+) Transporter 3, Probable potassium transporter 3	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 3		1	AJ427974. KT-HAK-KUP family of transporters. Q5ZC87.	 Biochemical character	Os01g0369300	LOC_Os01g27170.1				GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity		
8658	HAK4	OsHAK4	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 4	High-affinity Potassium(K+) Transporter 4, Probable potassium transporter 4	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 4		8	AK071698, AF129485. KT-HAK-KUP family of transporters. Q6YSA9.	 Biochemical character	Os08g0466200	LOC_Os08g36340.1				GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity		
8659	HAK5	OsHAK5, FCO13, OsFCO13	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 5	High-affinity Potassium(K+) Transporter 5, Potassium transporter 5, high affinity K transporter 5, Functioning in Cesium Over-transport 13	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 5		1	AK241580. KT-HAK-KUP family of transporters. Q5JK32. The O. glaberrima ortholog of OsHAK5 is significantly upregulated under salt stress. (Meyer et al. 2016)	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0930400	LOC_Os01g70490.1				GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030955 - potassium ion binding, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport	TO:0006001 - salt tolerance	
8660	HAK6	OsHAK6, OsSTA42	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 6	High-affinity Potassium(K+) Transporter 6, Potassium transporter 6.	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 6		1	KT-HAK-KUP family of transporters. Q5JMH0. LOC_Os01g70660. a mature anther-preferentially expressed gene. The OsHAK6 ortholog in O. glaberrima did not show evidence of upregulation under salt stress. (Meyer et al. 2016)	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0932500	LOC_Os01g70660.1				GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity		PO:0009066 - anther 
8661	HAK7	OsHAK7	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 7	High-affinity Potassium(K+) Transporter 7, Potassium transporter 7	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 7		7	AJ427971, AJ427976. KT-HAK-KUP family of transporters. Q8H3P9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0669700	LOC_Os07g47350.2, LOC_Os07g47350.1				GO:0016021 - integral to membrane, GO:0051365 - cellular response to potassium ion starvation, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity		
8662	HAK8	OsHAK8	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 8	High-affinity Potassium(K+) Transporter 8, Putative potassium transporter 8	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 8		3	AJ427977. KT-HAK-KUP family of transporters. Q8VXB5.	 Biochemical character	Os03g0337500	LOC_Os03g21890.1				GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport		
8663	HAK9	OsHAK9	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 9	High-affinity Potassium(K+) Transporter 9, Probable potassium transporter 9	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 9		7	AK070738. KT-HAK-KUP family of transporters. Q7XIV8.	 Biochemical character	Os07g0679000	LOC_Os07g48130.4, LOC_Os07g48130.3, LOC_Os07g48130.2, LOC_Os07g48130.1				GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding		
8664	HAK10	OsHAK10	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 10	High-affinity Potassium(K+) Transporter 10, Potassium transporter 10	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 10		6	AJ427972, AJ427979. KT-HAK-KUP family of transporters. Q67VS5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0625900	LOC_Os06g42030.1				GO:0005773 - vacuole, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane		
8665	HAK11	OsHAK11	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 11	High-affinity Potassium(K+) Transporter 11, Probable potassium transporter 11	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 11		4	KT-HAK-KUP family of transporters. Q7XLC6.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0613900	LOC_Os04g52390.1				GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport	TO:0006001 - salt tolerance	
8666	HAK12	OsHAK12	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 12	High-affinity Potassium(K+) Transporter 12, Putative potassium transporter 12	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 12		8	AJ427981. KT-HAK-KUP family of transporters. Q8VXB1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0206400	LOC_Os08g10550.1				GO:0016021 - integral to membrane, GO:0051365 - cellular response to potassium ion starvation, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding		
8667	HAK13	OsHAK13	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 13	High-affinity Potassium(K+) Transporter 13, Probable potassium transporter 13	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 13		6	AJ427982. KT-HAK-KUP family of transporters. Q652J4.	 Biochemical character	Os06g0671000	LOC_Os06g45940.2, LOC_Os06g45940.1				GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport		
8668	HAK14	OsHAK14	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 14	High-affinity Potassium(K+) Transporter 14, Probable potassium transporter 14	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 14		7	AJ427983. KT-HAK-KUP family of transporters. Q69RI8.	 Biochemical character	Os07g0509200	LOC_Os07g32530.1				GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding		
8669	HAK15	OsHAK15	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 15	High-affinity Potassium(K+) Transporter 15, Probable potassium transporter 15	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 15		4	AJ427984. KT-HAK-KUP family of transporters. Q7XPL3. 	 Biochemical character	Os04g0610700	LOC_Os04g52120.1				GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding		
8670	HAK16	OsHAK16	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 16	High-affinity Potassium(K+) Transporter 16, Probable potassium transporter 16	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 16		3	AJ427973. KT-HAK-KUP family of transporters. Q84MS3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0575200	LOC_Os03g37840.1				GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0016021 - integral to membrane, GO:0051365 - cellular response to potassium ion starvation, GO:0015079 - potassium ion transmembrane transporter activity, GO:0009651 - response to salt stress	TO:0000008 - potassium sensitivity, TO:0006001 - salt tolerance	
8671	HAK17	OsHAK17, FCO3, FCO4	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 17	High-affinity Potassium(K+) Transporter 17, Probable potassium transporter 17, Functioning in Cesium Over-transport 3, Functioning in Cesium Over-transport 4	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 17		9	KT-HAK-KUP family of transporters. Q67UC7.	 Biochemical character	Os09g0448200	LOC_Os09g27580.3, LOC_Os09g27580.2, LOC_Os09g27580.1				GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity		PO:0025034 - leaf 
8672	HAK18	OsHAK18	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 18	High-affinity Potassium(K+) Transporter 18, Potassium transporter 18	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 18		9	AK065464. KT-HAK-KUP family of transporters. Q653B6.	 Biochemical character	Os09g0563200	LOC_Os09g38960.4, LOC_Os09g38960.3, LOC_Os09g38960.2				GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030955 - potassium ion binding		
8673	HAK19	OsHAK19	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 19	High-affinity Potassium(K+) Transporter 19, Potassium transporter 19	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 19		2	AK106353. KT-HAK-KUP family of transporters. Q6H4M2.	 Biochemical character	Os02g0518600	LOC_Os02g31910.2, LOC_Os02g31910.1				GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity		
8674	HAK20	OsHAK20	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 20	High-affinity Potassium(K+) Transporter 20, Potassium transporter 20	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 20		2	AK119325. KT-HAK-KUP family of transporters. Q6H4L9.	 Biochemical character	Os02g0519100	LOC_Os02g31940.1				GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport		
8675	HAK21	OsHAK21	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 21	High-affinity Potassium(K+) Transporter 21, Potassium transporter 21	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 21	oshak21	3	KT-HAK-KUP family of transporters. Q75G84. LOC_Os03g37930.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0576200	LOC_Os03g37930.1				GO:0009753 - response to jasmonic acid stimulus, GO:0010107 - potassium ion import, GO:0015079 - potassium ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006883 - cellular sodium ion homeostasis, GO:0006813 - potassium ion transport, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding, GO:0030007 - cellular potassium ion homeostasis	TO:0006001 - salt tolerance, TO:0000609 - potassium content, TO:0000525 - sodium to potassium content ratio, TO:0000514 - potassium uptake, TO:0000172 - jasmonic acid sensitivity	PO:0005421 - parenchyma , PO:0005352 - xylem 
8676	HAK22	OsHAK22	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 22	High-affinity Potassium(K+) Transporter 22, Potassium transporter 22	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 22		7	AK099800. KT-HAK-KUP family of transporters. Q69L87.	 Biochemical character	Os07g0102100	LOC_Os07g01214.1				GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport		
8677	HAK23	OsHAK23	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 23	High-affinity Potassium(K+) Transporter 23, Potassium transporter 23	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 23		9	AK070831. KT-HAK-KUP family of transporters. Q6H4R6.	 Biochemical character	Os09g0376900	LOC_Os09g21000.1				GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity		
8678	HAK24	OsHAK24	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 24	High-affinity Potassium(K+) Transporter 24, Potassium transporter 24	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 24		6	KT-HAK-KUP family of transporters. Q5Z6K9.	 Biochemical character	Os06g0270200	LOC_Os06g15910.1				GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane		
8679	HAK25	OsHAK25	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 25	High-affinity Potassium(K+) Transporter 25, Potassium transporter 25	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 25		2	KT-HAK-KUP family of transporters. Q6YWQ4. Potassium transporter (KT) in Hu et al. 2015. LOC_Os02g49760.	 Biochemical character	Os02g0730300	LOC_Os02g49760.4, LOC_Os02g49760.3, LOC_Os02g49760.2, LOC_Os02g49760.1				GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport		
8680	HAK26	OsHAK26	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 26	High-affinity Potassium(K+) Transporter 26, Potassium transporter 26	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 26		8	AK072472. KT-HAK-KUP family of transporters. Q84YJ9.	 Biochemical character	Os08g0510300	LOC_Os08g39950.1				GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity		
8681	HAK27	OsHAK27	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 27	High-affinity Potassium(K+) Transporter 27, Potassium transporter 27	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 27		3	AK068853. KT-HAK-KUP family of transporters. Q84MS4.	 Biochemical character	Os03g0574900	LOC_Os03g37830.1				GO:0016021 - integral to membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030955 - potassium ion binding	TO:0000172 - jasmonic acid sensitivity	
8682	NYC3	nyc3, OsNYC3, PPH	NON-YELLOW COLORING 3	pheophytinase	PLASTID-LOCALIZING ALPHA/BETA HYDROLASE-FOLD FAMILY PROTEIN	nyc3-1, nyc3-2, nyc3-3	6	LOC_Os06g24730. AB476298. stay green. 	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os06g0354700	LOC_Os06g24730.3, LOC_Os06g24730.2, LOC_Os06g24730.1		0		GO:0015996 - chlorophyll catabolic process, GO:0080124 - pheophytinase activity, GO:0010150 - leaf senescence, GO:0016787 - hydrolase activity	TO:0000326 - leaf color, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
8683	NOL	nol, NOL1, OsNOL, OsNOL1	NYC1-LIKE	"Non-Yellow Coloring 1 like, NYC1-like, \"Chlorophyll(ide) b reductase NOL, chloroplastic\", Protein NON-YELLOW COLORING 1-LIKE, Protein NYC1-LIKE, Short-chain dehydrogenase/reductase NOL"	NYC1-LIKE		3	LOC_Os03g45194. chlorophyll b reductase, Chl b reductase, chlorophyll(ide) b reductase. Q84ST4. AB255026. EC=1.1.1.294	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os03g0654600	LOC_Os03g45194.1	GR:0101293	0		GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0055114 - oxidation reduction, GO:0009535 - chloroplast thylakoid membrane, GO:0034256 - chlorophyll(ide) b reductase activity, GO:0005488 - binding, GO:0015996 - chlorophyll catabolic process, GO:0009536 - plastid, GO:0008152 - metabolic process, GO:0016491 - oxidoreductase activity	TO:0000326 - leaf color	
8684	NHL1		NYC3-LIKE 1		NYC3-LIKE 1		2	Os02g0705100	 Biochemical character	Os02g0705100	LOC_Os02g47620.3, LOC_Os02g47620.2, LOC_Os02g47620.1		0		GO:0016787 - hydrolase activity, GO:0010150 - leaf senescence, GO:0015996 - chlorophyll catabolic process		
8685	NHL2		NYC3-LIKE 2		NYC3-LIKE 2		7	Os07g38830	 Biochemical character	Os07g0575800	LOC_Os07g38830.2, LOC_Os07g38830.1		0		GO:0015996 - chlorophyll catabolic process, GO:0016787 - hydrolase activity, GO:0010150 - leaf senescence		
8686	NHL3		NYC3-LIKE 3		NYC3-LIKE 3		5	Os05g0419000	 Biochemical character	Os05g0419000	LOC_Os05g34630.1		0		GO:0015996 - chlorophyll catabolic process, GO:0016787 - hydrolase activity, GO:0010150 - leaf senescence		
8688	PLDalpha2	OsPLDalpha2	PHOSPHOLIPASE D alpha 2	phospholipase Dalpha2	PHOSPHOLIPASE D alpha 2		5		 Biochemical character	Os05g0171000	LOC_Os05g07880.2, LOC_Os05g07880.1		0		GO:0004630 - phospholipase D activity, GO:0070290 - NAPE-specific phospholipase D activity, GO:0005509 - calcium ion binding, GO:0016020 - membrane, GO:0016042 - lipid catabolic process, GO:0046470 - phosphatidylcholine metabolic process		
8692	PLDalpha6	OsPLDalpha6, OsPLDeta1, OsPLDmu	PHOSPHOLIPASE D alpha 6	phospholipase D mu	PHOSPHOLIPASE D alpha 6		3	OsPLDeta1 in Qi et al. 2011. AC099323. OsPLDmu in Elias et al. 2002.	 Biochemical character	Os03g0391400	LOC_Os03g27370.1		0		GO:0005509 - calcium ion binding, GO:0046466 - membrane lipid catabolic process, GO:0046470 - phosphatidylcholine metabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0004630 - phospholipase D activity, GO:0016020 - membrane, GO:0070290 - NAPE-specific phospholipase D activity		
8693	PLDalpha7	OsPLDalpha7, OsPLDtheta	PHOSPHOLIPASE D alpha 7	phospholipase D theta	PHOSPHOLIPASE D alpha 7		8	OsPLDtheta in Elias et al. 2002.	 Biochemical character	Os08g0401800	LOC_Os08g31060.1		0		GO:0004630 - phospholipase D activity		
8694	PLDalpha8	OsPLDalpha8, OsPLDlambda	PHOSPHOLIPASE D alpha 8	phospholipase D lambda	PHOSPHOLIPASE D alpha 8		9	AF411223. AU094063, C72750, C93652. OsPLDlambda in Elias et al. 2002.	 Biochemical character	Os09g0421300	LOC_Os09g25390.1		0		GO:0006970 - response to osmotic stress, GO:0070290 - NAPE-specific phospholipase D activity, GO:0006995 - cellular response to nitrogen starvation, GO:0004630 - phospholipase D activity, GO:0048364 - root development, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding, GO:0051301 - cell division, GO:0051365 - cellular response to potassium ion starvation, GO:0016049 - cell growth, GO:0009395 - phospholipid catabolic process, GO:0009791 - post-embryonic development, GO:0016036 - cellular response to phosphate starvation, GO:0045848 - positive regulation of nitrogen utilization, GO:0046470 - phosphatidylcholine metabolic process		
8695	PLDbeta1	OsPLDbeta1	PHOSPHOLIPASE D beta 1	phospholipase Dbeta1	PHOSPHOLIPASE D beta 1		10	AJ419630. AU091872, BE530951, C72286. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0524400	LOC_Os10g38060.2, LOC_Os10g38060.1		0		GO:0004630 - phospholipase D activity, GO:0046686 - response to cadmium ion, GO:0050832 - defense response to fungus, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0003824 - catalytic activity	TO:0000074 - blast disease	
8696	PLDbeta2	OsPLDbeta2, OsSTA86	PHOSPHOLIPASE D beta 2		PHOSPHOLIPASE D beta 2		3	AF411221. LOC_Os03g02740. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0119100	LOC_Os03g02740.1		0		GO:0005509 - calcium ion binding, GO:0070290 - NAPE-specific phospholipase D activity, GO:0004630 - phospholipase D activity, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0016020 - membrane, GO:0016042 - lipid catabolic process, GO:0046470 - phosphatidylcholine metabolic process, GO:0046686 - response to cadmium ion		PO:0009066 - anther 
8697	PLDdelta1	OsPLDdelta1, OsPLDdelta, OsSTA233	PHOSPHOLIPASE D delta 1	phospholipase D delta	PHOSPHOLIPASE D delta 1		9	AU058024, BE040461. GO:0090333: regulation of stomatal closure. LOC_Os09g37100. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0543100	LOC_Os09g37100.1		0		GO:0012501 - programmed cell death, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009506 - plasmodesma, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0016042 - lipid catabolic process, GO:0070290 - NAPE-specific phospholipase D activity, GO:0046473 - phosphatidic acid metabolic process, GO:0046470 - phosphatidylcholine metabolic process, GO:0004630 - phospholipase D activity, GO:0005509 - calcium ion binding		PO:0009066 - anther 
8699	PLDdelta3	OsPLDdelta3, OsPLDnu2	PHOSPHOLIPASE D delta 3	phospholipase D nu 2	PHOSPHOLIPASE D delta 3		7	AF414565, AF414566. OsPLDnu2 in Elias et al. 2002.	 Biochemical character	Os07g0260400	LOC_Os07g15680.1		0		GO:0016042 - lipid catabolic process, GO:0046470 - phosphatidylcholine metabolic process, GO:0004630 - phospholipase D activity, GO:0016020 - membrane, GO:0005509 - calcium ion binding, GO:0003824 - catalytic activity, GO:0070290 - NAPE-specific phospholipase D activity		
8700	PLDkappa	OsPLDkappa	PHOSPHOLIPASE D kappa		PHOSPHOLIPASE D kappa		2		 Biochemical character	Os02g0120200	LOC_Os02g02790.1		0		GO:0004630 - phospholipase D activity		
8701	PLDzeta1	OsPLDzeta1, OsPLDrho1	PHOSPHOLIPASE D zeta 1	phospholipase D rho 1	PHOSPHOLIPASE D zeta 1		5	BF430634. OsPLDrho1 in Elias et al. 2002, Jeong et al. 2016. LOC_Os05g29050.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0358700	LOC_Os05g29050.2, LOC_Os05g29050.1		0		GO:0016036 - cellular response to phosphate starvation, GO:0004630 - phospholipase D activity	TO:0000102 - phosphorus sensitivity	
8702	PLDzeta2	OsPLDzeta2, OsPLDrho2	PHOSPHOLIPASE D zeta 2	phospholipase D rho 2	PHOSPHOLIPASE D zeta 2		1	C19214, AU091665, AU173474, AU173473. OsPLDrho2 in Elias et al. 2002. LOC_Os01g20860.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0310100	LOC_Os01g20860.1		0		GO:0004630 - phospholipase D activity, GO:0016036 - cellular response to phosphate starvation, GO:0005543 - phospholipid binding	TO:0000102 - phosphorus sensitivity, TO:0002661 - seed maturation	
8703	PLDvarphi	OsPLDvarphi	PHOSPHOLIPASE D varphi		PHOSPHOLIPASE D varphi		6	Os06g0649900,AK122015	 Biochemical character	Os06g0649900	LOC_Os06g44060.2, LOC_Os06g44060.1		0		GO:0004630 - phospholipase D activity		
8704	HD16	Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1	HEADING DATE 16	EARLY FLOWERING 1, Early flowering1, Casein Kinase I	CASEIN KINASE I		3	Under long day (14.5hr) treatment, this QTL introduced from Koshihikari to Nipponbare decreased the days to heading. Hd16 is involved in the photoperiodic flowering pathway by means of its phosphorylaion of Ghd7. The genome sequence of Hd16 in Nipponbare is the same as that of the wild-type allele of EL1. EL1 encodes the casein kinase I that phosphorylates SLR1. The genome sequence of Hd16 in Nipponbare is the same as that of the wild-type allele of EL1. LOC_Os03g57940.	 Biochemical character,  Reproductive organ - Heading date	Os03g0793500	LOC_Os03g57940.4, LOC_Os03g57940.3, LOC_Os03g57940.2, LOC_Os03g57940.1		0		GO:0048573 - photoperiodism, flowering, GO:0009648 - photoperiodism, GO:2000028 - regulation of photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	
8705	HD3B	Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1	HEADING DATE 3B	HEADING DATE 17, EARLINESS 7, EARLY FLOWERING 3-1, EARLY FLOWERING3.1, EARLY FLOWERING 3.1, ELF3 homolog 1, Heading date from Qingluzhan 11, EARLY FLOWERING3		oself3, Ef7-1, Hd-q, oself3.1, OsELF3(L), OsELF3(S)	6	LOC_Os06g05060. KC204687. Under long day (14.5hr) treatment, this QTL introduced from Koshihikari to Nipponbare increased the days to heading. AB683966(Nipponbare), AB683967(Koshihikari), AB683968(Kasalath). This gene encodes a homolog of Arabidopsis EARLY FLOWERING 3 (ELF3). AB686539(Gimbozu), AB686540(HS276), EF7 encodes an ELF3-like protein. EF7 functions as a floral promoter by repressing Ghd7 expression under both SD and LD conditions. an Ortholog of Arabidopsis EARLY FLOWERING 3. a rice ortholog of Arabidopsis gene for circadian clock component. GO:1900057: positive regulation of leaf senescence.	 Vegetative organ - Leaf,  Reproductive organ - Heading date	Os06g0142600	LOC_Os06g05060.1		0		GO:0007623 - circadian rhythm, GO:0048573 - photoperiodism, flowering, GO:0009648 - photoperiodism	TO:0000249 - leaf senescence, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading, TO:0000396 - grain yield	PO:0001054 - 4 leaf senescence stage 
8706	HOS58		HOMEOBOX ORYZA SATIVA 58	Homeobox protein knotted-1-like 2, Homeobox protein HOS58	HOMEOBOX PROTEIN HOS58		2	Q0E3C3.	 Other	Os02g0182800	LOC_Os02g08544.3, LOC_Os02g08544.2, LOC_Os02g08544.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
8707	HOS59		HOMEOBOX ORYZA SATIVA59	Homeobox protein knotted-1-like 11, Homeobox protein HOS59	HOMEOBOX PROTEIN HOS59		6	Q94LW4. Knox homeodomain protein.	 Other	Os06g0646600	LOC_Os06g43860.4, LOC_Os06g43860.2, LOC_Os06g43860.1		0		GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
8708	HOS66	HB365, KNAT7	HOMEOBOX ORYZA SATIVA 66	Homeobox protein knotted-1-like 3, Homeobox protein HOS66	HOMEOBOX PROTEIN HOS66		3	AF003602. Q94LW3. LOC_Os03g03164. a rice homolog of Arabidopsis KNAT7. GO:1901141: regulation of lignin biosynthetic process. GO:1901347: negative regulation of secondary cell wall biogenesis.	 Other	Os03g0123500	LOC_Os03g03164.3, LOC_Os03g03164.2, LOC_Os03g03164.1		0		GO:0009834 - secondary cell wall biogenesis, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009809 - lignin biosynthetic process		
8709	OSH45	OSH42, OSH44, H45	HOMEOBOX45	Oryza sativa homeobox45, Homeobox protein knotted-1-like 13, Homeobox protein OSH45	HOMEODOMAIN CONTAINING PROTEIN 45		8	Q0J6N4. D49704. OSH42 and OSH44 are alternative spliced products.	 Other	Os08g0292900	LOC_Os08g19650.2, LOC_Os08g19650.1		0		GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
8710	GAMYBL1	OsGAMYBL1	GAMYB-LIKE 1	GAMYB-like1	GAMYB-LIKE 1		6	AB212075.LOC_Os06g403301	 Other	Os06g0605600	LOC_Os06g40330.1		0		GO:0010476 - gibberellin-mediated signaling, GO:0009908 - flower development		
8711	GAMYBL2	OsGAMYBL2	GAMYB-LIKE 2		GAMYB-LIKE 2		3	AC147962, AAT76349	 Other	Os03g0578900	LOC_Os03g38210.1		0		GO:0009908 - flower development, GO:0010476 - gibberellin-mediated signaling		
8712	BT1-1	OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2	BRITTLE 1-1	Brittle-1-1, endosperm-specific gene 29, BRITTLE1, shrunken3	BRITTLE 1-1 PROTEIN	shr3, osbt1	2	plastidic translocator, putative ADP-glucose translocator, Brittle-1 protein, BT1. LOC_Os02g10800. OsBT1 in Cakir et al. 2016 and Li et al. 2017. ADP-glucose transporter. OsBT1-2 in Zhao et al. 2019.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os02g0202400	LOC_Os02g10800.3, LOC_Os02g10800.2, LOC_Os02g10800.1		0		GO:0005982 - starch metabolic process, GO:0033097 - amyloplast membrane, GO:0055085 - transmembrane transport, GO:0009660 - amyloplast organization, GO:0016021 - integral to membrane, GO:0010021 - amylopectin biosynthetic process, GO:0019252 - starch biosynthetic process, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0015711 - organic anion transport, GO:0010581 - regulation of starch biosynthetic process, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation	TO:0000382 - 1000-seed weight, TO:0000696 - starch content, TO:0000196 - amylose content, TO:0000100 - shrunken endosperm, TO:0000487 - endosperm color, TO:0002658 - starch grain synthesis	PO:0009089 - endosperm 
8713	BT1-2	OsBT1-2	BRITTLE 1-2	Brittle-1-2	BRITTLE 1-2 PROTEIN		5	Os05g0171300. plastidic translocator, putative ADP-glucose translocator, Brittle-1 protein, BT1.	 Biochemical character	Os05g0171300	LOC_Os05g07900.2, LOC_Os05g07900.1		0		GO:0022891 - substrate-specific transmembrane transporter activity, GO:0005982 - starch metabolic process		
8714	BT1-3	OsBT1-3, SLA	BRITTLE 1-3	Brittle-1-3, seedling leaf albino	BRITTLE 1-3 PROTEIN	sla	6	LOC_Os06g40050. plastidic translocator, putative ADP-glucose translocator, Brittle-1 protein, BT1.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os06g0602700	LOC_Os06g40050.2, LOC_Os06g40050.1		0		GO:0005982 - starch metabolic process, GO:0009941 - chloroplast envelope, GO:0009658 - chloroplast organization, GO:0015292 - uniporter activity, GO:0005743 - mitochondrial inner membrane, GO:0015853 - adenine transport, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0006839 - mitochondrial transport, GO:0009507 - chloroplast	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait	
8715	PPT1	OsPPT1	PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 1				9	Os09g0297400	 Biochemical character	Os09g0297400	LOC_Os09g12600.2, LOC_Os09g12600.1		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
8716	PPT2	OsPPT2	PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 2				8	LOC_Os08g25630 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character				0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
8717	PPT3	OsPPT3	PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 3				1	Os01g0172100	 Biochemical character	Os01g0172100	LOC_Os01g07730.1		0		GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
8718	PPT4	OsPPT4	PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 4				5	LOC_Os05g07870	 Biochemical character	Os05g0170950	LOC_Os05g07870.1		0		GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
8719	TPT1	OsTPT1, TPT, tpt	TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 1	triose phosphate/phosphate translocator, triose phosphate/phosphate translocator 1	TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 1		1	AY028422. Q9FTT3.	 Biochemical character	Os01g0239200	LOC_Os01g13770.3, LOC_Os01g13770.2, LOC_Os01g13770.1		0		GO:0005215 - transporter activity, GO:0006810 - transport, GO:0031969 - chloroplast membrane, GO:0008643 - carbohydrate transport, GO:0016021 - integral to membrane		
8720	TPT2	OsTPT2	TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 2	triose phosphate/phosphate translocator 2	TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 2		5	Os05g0241200	 Biochemical character	Os05g0241200	LOC_Os05g15160.1		0		GO:0005215 - transporter activity, GO:0006810 - transport, GO:0016021 - integral to membrane		
8721	GPT1	OsGPT1	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1		GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1		8	Os08g0187800	 Biochemical character	Os08g0187800	LOC_Os08g08840.2, LOC_Os08g08840.1		0		GO:0005215 - transporter activity		
8722	GPT2-1	OsGPT2-1	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-1		GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-1		7	LOC_Os07g34010 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character				0		GO:0005215 - transporter activity		
8723	GPT2-2	OsGPT2-2	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-2		GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-2		7	LOC_Os07g33960 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character				0		GO:0005215 - transporter activity		
8724	GPT2-3	OsGPT2-3	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-3		GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-3		7	LOC_Os07g33910	 Biochemical character	Os07g0523400	LOC_Os07g33910.2		0		GO:0016020 - membrane, GO:0005215 - transporter activity		
8725	NTT1	OsNTT1	PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 1		PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 1		1	Os01g0647100	 Biochemical character	Os01g0647100	LOC_Os01g45910.1		0		GO:0005471 - ATP:ADP antiporter activity		
8726	NTT2	OsNTT2	PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 2		PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 2		2	Os02g0208100	 Biochemical character	Os02g0208100	LOC_Os02g11740.2, LOC_Os02g11740.1		0		GO:0005471 - ATP:ADP antiporter activity		
8727	PGLCT	OsPGLCT	PLASTIDIC GLUCOSE TRANSLOCATOR		PLASTIDIC GLUCOSE TRANSLOCATOR		1		 Biochemical character	Os01g0133400	LOC_Os01g04190.1, LOC_Os01g04190.4, LOC_Os01g04190.3, LOC_Os01g04190.2		0		GO:0022891 - substrate-specific transmembrane transporter activity		
8728	MT	OsMT, OsMEX1, MEX1	MALTOSE TRANSLOCATOR	maltose excess1, maltose excess 1	MALTOSE TRANSLOCATOR		4	a plastidic maltose transporter. KC865045. LOC_Os04g51330.	 Biochemical character	Os04g0602400	LOC_Os04g51330.1		0		GO:0005363 - maltose transmembrane transporter activity, GO:0009941 - chloroplast envelope		PO:0009029 - stamen , PO:0025281 - pollen 
8730	PROG1	OsPROG1	PROSTRATE GROWTH 1	zinc-finger nuclear transcription factor PROG1	ZINC-FINGER NUCLEAR TRANSCRIPTION FACTOR PROG1	prog1	7	EU554631(Oryza rufipogon), EU556720(Oryza rufipogon), EU556721(Oryza rufipogon), EU556722(Oryza nivara), EU556723(Oryza sativa), EU556719(Oryza rufipogon), EU556718(Oryza rufipogon), FJ155665(Oryza rufipogon). ZINC-FINGER NUCLEAR TRANSCRIPTION  FACTOR. LOC_Os07g05900. PO:0005001; basal axillary shoot ; PO:0008019; leaf lamina base ; PO:0009081; inflorescence branch ; PO:0008017; leaf sheath pulvinus. HM149562-HM237792 (O. sativa, O. rufipogon and O. nivara gene, promoter region). ZnF1 in O. rufipogon. MF503970, MF503971, MF503972 (O. rufipogon). ASR75314 (O. rufipogon).	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Other	Os07g0153600	LOC_Os07g05900.1	GR:0080061	0		GO:0048873 - homeostasis of number of cells within a tissue, GO:0016563 - transcription activator activity, GO:0005634 - nucleus, GO:0009536 - plastid	TO:0000152 - panicle number, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000567 - tiller angle, TO:0000440 - grain number per plant, TO:0002759 - grain number, TO:0000449 - grain yield per plant, TO:0000207 - plant height	PO:0005001 - basal axillary shoot system , PO:0008017 - leaf sheath pulvinus , PO:0008019 - leaf lamina base , PO:0009081 - inflorescence branch 
8731	FC1	OsCAD7, fc1, CAD7	FLEXIBLE CULM 1	flexible culm1, FLEXIBLE CULM1, Protein FLEXIBLE CULM 1, Cinnamyl alcohol dehydrogenase 7	CINNAMYL-ALCOHOL DEHYDROGENASE 7		4	LOC_Os04g52280. fc1 plants exhibited a reduction in mechanical strength and a slight delay in growth. Q0JA75. GO:0052747:sinapyl alcohol dehydrogenase activity. GO:1901698: response to nitrogen compound. PO:0030123: panicle inflorescence.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os04g0612700	LOC_Os04g52280.1		0		GO:0048046 - apoplast, GO:0044036 - cell wall macromolecule metabolic process, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0009626 - plant-type hypersensitive response, GO:0055114 - oxidation reduction, GO:0008270 - zinc ion binding, GO:0009834 - secondary cell wall biogenesis, GO:0000166 - nucleotide binding, GO:0009809 - lignin biosynthetic process, GO:0009617 - response to bacterium, GO:0009808 - lignin metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity	TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0000733 - lignin biosynthesis trait	PO:0020104 - leaf sheath , PO:0009047 - stem 
8732	CIF2		CROSS-INCOMPATIBILITY IN THE FEMALE REACTION 2				6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness				0		GO:0009566 - fertilization, GO:0009856 - pollination		
8733	SH-H	sh-h, OsCPL1	SHATTERING-H	carboxy-terminal domain phosphatase-like 1	CARBOXY-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 PROTEIN.	sh-h	7	sh-h is very close to the Rc gene. between RM7161 and RM8262 on chromosome 7. SH-H encodes a carboxy-terminal domain (CTD) phosphatase-like 1 (OsCPL1) protein that is similar to the metazoan CTD phosphatases, which are involved in cell differentiation.  LOC_Os07g10690. GQ32874	 Seed - Physiological traits - Shattering	Os07g0207700	LOC_Os07g10690.8, LOC_Os07g10690.7, LOC_Os07g10690.6, LOC_Os07g10690.4, LOC_Os07g10690.3, LOC_Os07g10690.2, LOC_Os07g10690.1		0				
8734	NADP-ME1	NADP-ME, ME6, OschlME, XcrMal1	NADP-MALIC ENZYME 1	"\"NADP-dependent malic enzyme, chloroplastic\", chloroplastic NADP malic enzyme, plastidic NADP-ME"	NADP-MALIC ENZYME 1		1	D16499. P43279. EC=1.1.1.40 XcrMal1 in Kishimoto et al. 1997.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0188400	LOC_Os01g09320.1	GR:0061037	0		GO:0046872 - metal ion binding, GO:0004473 - malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, GO:0051287 - NAD or NADH binding, GO:0006108 - malate metabolic process, GO:0009507 - chloroplast, GO:0055114 - oxidation reduction		
8735	NADP-ME2	OscytME1	NADP-MALIC ENZYME 2	cytosolic NADP malic enzyme 1	NADP-MALIC ENZYME 2		1	AB053295, Experimental results suggest that NADP-ME2 has a role in enhancing tolerance of plants to salt and osmotic stress.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0723400	LOC_Os01g52500.5, LOC_Os01g52500.4, LOC_Os01g52500.3, LOC_Os01g52500.2, LOC_Os01g52500.1		0		GO:0046872 - metal ion binding, GO:0051287 - NAD or NADH binding, GO:0006108 - malate metabolic process, GO:0004473 - malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, GO:0009507 - chloroplast, GO:0055114 - oxidation reduction		
8736	qSH3		Shattering (QTL)-3			qSH3-W	3		 Seed - Physiological traits - Shattering				0			TO:0000473 - grain shattering	
8737	SH4	sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23	SHATTERING 4	grain shattering quantitative trait locus on chromosome 4, SHATTERING ABORTION2, shattering abortion 2, shattering 4, Shattering1, Myb/SANT-LIKE 23		sh4-1, sh4-2, shat2, qSH4-W, sh4	4	EF203243. DQ383398-DQ421814 (Oryza sativa and other wild rice species). GU220907-GU221049 (Oryza sativa and other wild rice species). EU999862-EU999948 (Oryza sativa and other wild rice species). EF203243 (O. rufipogon), EF203244 (indica). trihelix family of transcription factors. SHA1 in Lin et al. 2007. Myb3 family TF gene. LOC_Os04g57530. OgSh4 in O. glaberrima. a Myb3 transcription factor.  AB330247, AB330272-AB330290. (Oryza sativa and other wild rice species).	 Seed - Physiological traits - Shattering	Os04g0670900	LOC_Os04g57530.1		0		GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000473 - grain shattering	PO:0025034 - leaf , PO:0009047 - stem 
8738	DH1	OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16	DEGENERATED HULL 1	degenerated hull1, lateral organ boundaries domain 2-1	LOB DOMAIN-LIKE PROTEIN	dh1, DH1	2	LOC_Os02g57490. In the dh1 mutant, all floral organs of the spikelets had absolutely degenerated and formed tumor-like organs. TO:0000816: inflorescence bract anatomy and morphology trait. a downstream gene of OsJMJ706.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0820500	LOC_Os02g57490.1		0		GO:0005634 - nucleus, GO:0010311 - lateral root formation, GO:0048437 - floral organ development	TO:0000240 - sterile lemma length, TO:0006022 - floral organ development trait	
8739	EL5	EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6	ELICITOR 5	E3 ubiquitin-protein ligase EL5	E3 UBIQUITIN-PROTEIN LIGASE EL5		2	AB045120. ATL family, RING-H2 TYPE UBIQUITIN LIASE. Q9LRB7. EC=6.3.2.-	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os02g0559800	LOC_Os02g35329.1		0		GO:0005515 - protein binding, GO:0008219 - cell death, GO:0008270 - zinc ion binding, GO:0009736 - cytokinin mediated signaling, GO:0016021 - integral to membrane, GO:0016874 - ligase activity, GO:0019941 - modification-dependent protein catabolic process, GO:0080033 - response to nitrite		
8740	RRF1		RING FINGER 1	ATL family proteins.	RING FINGER 1		9		 Biochemical character				0		GO:0005515 - protein binding, GO:0008270 - zinc ion binding		
8741	EP2	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, CL7(t)	ERECT PANICLE 2	erect panical 2, Erect panicle2, erect panicle2-1, erect panicle2-2, dense and erect panicle 2, small and round seed 1, cleistogamy 7, cleistogamy gene on chromosome 7		ep2-1, ep2-2, dep2, dep2-1, dep2-2, srs1, srs1-1, srs1-2, srs1-3, srs1-4, srs1-5, cl7(t)	7	GQ449684. TO:0000800: inflorescence density (panicle density), TO:0000847: panicle anatomy and morphology trait. LOC_Os07g42410. TO:0000756: stem internode anatomy and morphology trait. TO:0000882: cleistogamous flower.	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os07g0616000	LOC_Os07g42410.1		0			TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000382 - 1000-seed weight, TO:0000402 - grain width, TO:0000397 - grain size, TO:0000050 - inflorescence branching, TO:0002637 - leaf size, TO:0000734 - grain length, TO:0000180 - spikelet fertility, TO:0002759 - grain number, TO:0000557 - secondary branch number, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000339 - stem thickness, TO:0000472 - vascular bundle number, TO:0000051 - stem strength	
8742	qSW5	GW5, OsGW5	seed width (QTL)-5				5	AB433345(Kasalath), Map position (5.35Mb).	 Character as QTL - Grain quality				0			TO:0000402 - grain width, TO:0000391 - seed size, TO:0000590 - grain weight	
8743	RF1C	Rf-1C	RESTORATION OF FERTILITY 1C				10		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration				0		GO:0007275 - multicellular organismal development		
8744	RF1D	Rf-1D	RESTORATION OF FERTILITY 1D				10		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration				0		GO:0007275 - multicellular organismal development		
8745	RF1E	Rf-1E	RESTORATION OF FERTILITY 1E				10		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration				0		GO:0007275 - multicellular organismal development		
8746	RF1F	Rf-1F	RESTORATION OF FERTILITY 1F				10		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration				0		GO:0007275 - multicellular organismal development		
8747	SDH1	sdh1, FP, sdh1-1	SUCCINATE DEHYDROGENASE SUBUNIT 1	"SUCCINATE:UBIQUINONE OXIDOREDUCTASE, Succinate dehydrogenase (ubiquinone) flavoprotein subunit, Succinate dehydrogenase subunit 1, Succinate dehydrogenase (ubiquinone) flavoprotein, \"Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial\", Flavoprotein subunit of complex II"	SUCCINATE DEHYDROGENASE SUBUNIT 1		7	LOC_Os07g04240. Q6ZDY8. EC=1.3.5.1	 Biochemical character	Os07g0134800	LOC_Os07g04240.1	GR:0100183	0		GO:0009055 - electron carrier activity, GO:0000104 - succinate dehydrogenase activity, GO:0005743 - mitochondrial inner membrane, GO:0008177 - succinate dehydrogenase (ubiquinone) activity, GO:0006810 - transport, GO:0006099 - tricarboxylic acid cycle, GO:0050660 - FAD binding, GO:0005749 - mitochondrial respiratory chain complex II, GO:0016491 - oxidoreductase activity, GO:0022900 - electron transport chain, GO:0015036 - disulfide oxidoreductase activity, GO:0005739 - mitochondrion		
8748	SDH2	SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14	SUCCINATE DEHYDROGENASE SUBUNIT 2	SUCCINATE:UBIQUINONE OXIDOREDUCTASE, mitochondrial succinate dehydrogenase subunit B, ribosomal protein S14, succinate dehydrogenase (iron-sulphur protein subunit), chimeric SDH2-RPS14	SUCCINATE DEHYDROGENASE SUBUNIT 2		8	LOC_Os08g02640. Q9S827. AB017427, AB017428, AB017429. D10414. The gene transcripts of sdhB and rps14 result from a single mRNA precursor by alternative splicing (Kubo et al. 1999).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0120000	LOC_Os08g02640.5, LOC_Os08g02640.4, LOC_Os08g02640.3, LOC_Os08g02640.2, LOC_Os08g02640.1		0		GO:0000104 - succinate dehydrogenase activity, GO:0006099 - tricarboxylic acid cycle, GO:0009055 - electron carrier activity, GO:0016491 - oxidoreductase activity, GO:0051537 - 2 iron, 2 sulfur cluster binding		
8749	SDH3		SUCCINATE DEHYDROGENASE SUBUNIT 3	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 3		2	LOC_Os02g02940. Q6ZH92.	 Biochemical character	Os02g0121800	LOC_Os02g02940.2, LOC_Os02g02940.1		0		GO:0005749 - mitochondrial respiratory chain complex II, GO:0046872 - metal ion binding, GO:0006121 - mitochondrial electron transport, succinate to ubiquinone, GO:0006099 - tricarboxylic acid cycle, GO:0000104 - succinate dehydrogenase activity, GO:0016021 - integral to membrane, GO:0045273 - respiratory chain complex II		
8750	SDH4		SUCCINATE DEHYDROGENASE SUBUNIT 4	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 4		1	LOC_Os01g70980. Q942X4.	 Biochemical character	Os01g0935900	LOC_Os01g70980.1		0		GO:0006099 - tricarboxylic acid cycle, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0045273 - respiratory chain complex II, GO:0005743 - mitochondrial inner membrane, GO:0000104 - succinate dehydrogenase activity		
8751	SDH5		SUCCINATE DEHYDROGENASE SUBUNIT 5	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 5		4	LOC_Os04g34100. Q0JDA2.	 Biochemical character	Os04g0418000	LOC_Os04g34100.1		0		GO:0000104 - succinate dehydrogenase activity, GO:0005634 - nucleus, GO:0009853 - photorespiration, GO:0051788 - response to misfolded protein, GO:0045273 - respiratory chain complex II, GO:0080129 - proteasome core complex assembly, GO:0006099 - tricarboxylic acid cycle, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005749 - mitochondrial respiratory chain complex II		
8752	SDH6		SUCCINATE DEHYDROGENASE SUBUNIT 6	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 6		8	LOC_Os08g02080. Q6ZCC4.	 Biochemical character	Os08g0112800	LOC_Os08g02080.2, LOC_Os08g02080.1		0		GO:0009853 - photorespiration, GO:0005749 - mitochondrial respiratory chain complex II, GO:0019867 - outer membrane, GO:0009536 - plastid, GO:0000104 - succinate dehydrogenase activity, GO:0045273 - respiratory chain complex II, GO:0005774 - vacuolar membrane, GO:0006099 - tricarboxylic acid cycle		
8753	SDH7		SUCCINATE DEHYDROGENASE SUBUNIT 7	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 7		9	LOC_Os09g21470. Q6H611.	 Biochemical character	Os09g0382500	LOC_Os09g21470.1		0		GO:0000104 - succinate dehydrogenase activity, GO:0045273 - respiratory chain complex II, GO:0005743 - mitochondrial inner membrane, GO:0006099 - tricarboxylic acid cycle		
8754	RIM1	ONAC054, ONAC54, NAC54	RICE DWARF VIRUS MULTIPLICATION 1	NAC domain-containing protein 054, NAC domain-containing protein 54	NAC DOMAIN-CONTAINING PROTEIN 54	rim1, rim1-1, rim1-2, rim1-3, rim1-4, rim1-5, rim1-6, rim1-7, rim1-8	3	Regulator of jasmonate signaling. rim1-1 mutant shows reduced susceptibility to RDV(rice dwarf virus) and also exhibits a semi-dwarf phenotype with shorter roots. AB265821. LOC_Os03g02800.	 Tolerance and resistance - Disease resistance	Os03g0119966	LOC_Os03g02800.1		0		GO:0003700 - transcription factor activity	TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity	
8755	OPR1	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR	12-OXOPHYTODIENOATE REDUCTASE 1	12-oxo-phytodienoic acid reductase 1, OPDA reductase	12-OXOPHYTODIENOATE REDUCTASE 1		6	LOC_Os06g11290. Q84QK0. AB122088. AB040743. C96685, C96686, C26019, AU092237, C26097, AU093231.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0216300	LOC_Os06g11290.1		0		GO:0010181 - FMN binding, GO:0009695 - jasmonic acid biosynthetic process, GO:0006952 - defense response, GO:0016629 - 12-oxophytodienoate reductase activity	TO:0000432 - temperature response trait	
8756	OPR2	OsOPR2, OsOPR06-5	12-OXOPHYTODIENOATE REDUCTASE 2	12-oxo-phytodienoic acid reductase 2	12-OXOPHYTODIENOATE REDUCTASE 2		6	OPDA reductase. Q69TH4.	 Biochemical character	Os06g0216200	LOC_Os06g11280.1		0		GO:0031408 - oxylipin biosynthetic process, GO:0010181 - FMN binding, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0016491 - oxidoreductase activity		
8757	OPR3	OsOPR3, OsOPR06-4	12-OXOPHYTODIENOATE REDUCTASE 3	12-oxo-phytodienoic acid reductase 3	12-OXOPHYTODIENOATE REDUCTASE 3		6	OPDA reductase. Q69TH6.	 Biochemical character	Os06g0216000	LOC_Os06g11260.1		0		GO:0016491 - oxidoreductase activity, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0010181 - FMN binding, GO:0031408 - oxylipin biosynthetic process		
8758	OPR4	OsOPR4, OsOPR10, OsOPR06-3	12-OXOPHYTODIENOATE REDUCTASE 4	12-oxo-phytodienoic acid reductase 4	12-OXOPHYTODIENOATE REDUCTASE 4		6	OPDA reductase. OPDAR. Q69TH8. AU057040, AU057041. LOC_Os06g11240.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0215900	LOC_Os06g11240.1		0		GO:0031408 - oxylipin biosynthetic process, GO:0050832 - defense response to fungus, GO:0016491 - oxidoreductase activity, GO:0010181 - FMN binding, GO:0016629 - 12-oxophytodienoate reductase activity	TO:0000074 - blast disease, TO:0000432 - temperature response trait	
8759	OPR5	OsOPR5, OsOPR6, OsOPR06-2	12-OXOPHYTODIENOATE REDUCTASE 5	12-oxo-phytodienoic acid reductase 5	12-OXOPHYTODIENOATE REDUCTASE 5		6	OPDA reductase. Q69TI0. LOC_Os06g11210.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0215600	LOC_Os06g11210.1		0		GO:0010181 - FMN binding, GO:0009695 - jasmonic acid biosynthetic process, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0031408 - oxylipin biosynthetic process, GO:0050832 - defense response to fungus, GO:0016491 - oxidoreductase activity	TO:0000074 - blast disease	
8760	OPR6	OsOPR6, OsOPR4, OsOPR06-1	12-OXOPHYTODIENOATE REDUCTASE 6	12-oxo-phytodienoic acid reductase 6	12-OXOPHYTODIENOATE REDUCTASE 6		6	OPDA reductase. Q69TI2. LOC_Os06g11200.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0215500	LOC_Os06g11200.1		0		GO:0016491 - oxidoreductase activity, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0050832 - defense response to fungus, GO:0010181 - FMN binding, GO:0031408 - oxylipin biosynthetic process	TO:0000074 - blast disease	
8761	OG1	OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1, OPR13, OPR3, OPR5, OPR9, OPR08-1	OPEN GLUME1	12-oxo-phytodienoic acid reductase 7, 12-oxophytodienoate reductase7, OPDA reductase 7, open glume 1	12-OXOPHYTODIENOATE REDUCTASE 7	og1	8	Q6Z965. OsOPR3 in Ye et al. 2019, Cheng et al. 2019.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os08g0459600	LOC_Os08g35740.2, LOC_Os08g35740.1		0		GO:0005777 - peroxisome, GO:0009695 - jasmonic acid biosynthetic process, GO:0010181 - FMN binding, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0008643 - carbohydrate transport, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0002668 - jasmonic acid content, TO:0000696 - starch content, TO:0000184 - seed anatomy and morphology trait	PO:0007616 - flowering stage , PO:0009036 - lodicule , PO:0009039 - glume 
8762	OPR8	OsOPR8, OsOPR7, OsOPR02-1	12-OXOPHYTODIENOATE REDUCTASE 8	12-oxo-phytodienoic acid reductase 8	12-OXOPHYTODIENOATE REDUCTASE 8		2	OPDA reductase. Q0E0C6.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0559400	LOC_Os02g35310.1		0		GO:0016629 - 12-oxophytodienoate reductase activity, GO:0016491 - oxidoreductase activity, GO:0031408 - oxylipin biosynthetic process, GO:0010181 - FMN binding		
8763	OPR9	OsOPR9, OsOPR01-2	12-OXOPHYTODIENOATE REDUCTASE 9	12-oxo-phytodienoic acid reductase 9	12-OXOPHYTODIENOATE REDUCTASE 9		1	OPDA reductase. Q5ZC83.	 Biochemical character	Os01g0370000	LOC_Os01g27240.1		0		GO:0010181 - FMN binding, GO:0016491 - oxidoreductase activity, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0031408 - oxylipin biosynthetic process		
8764	OPR10	OsOPR10, OsOPR12, OsOPR01-1	12-OXOPHYTODIENOATE REDUCTASE 10	12-oxo-phytodienoic acid reductase 10	12-OXOPHYTODIENOATE REDUCTASE 10		1	OPDA reductase. Q0JMR0.	 Biochemical character	Os01g0369900	LOC_Os01g27230.1		0		GO:0016491 - oxidoreductase activity, GO:0031408 - oxylipin biosynthetic process, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0010181 - FMN binding		
8765	AOS2	OsAOS2, CYP74A2, OsAOS, OsAOS1	ALLENE OXIDE SYNTHASE 2	Allene oxide synthase 2, Cytochrome P450 74A2, Hydroperoxide dehydrase 2, allene oxide synthase-1	ALLENE OXIDE SYNTHASE 2	osaos	3	AY310358. AY062258. AY055775. Q7XYS3. EC=4.2.1.92 OsAOS1 in Kobayashi et al. 2016, Yoeun et al. 2018. GO:0035864: response to potassium ion. 	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os03g0225900	LOC_Os03g12500.1		0		GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0009695 - jasmonic acid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0010106 - cellular response to iron ion starvation, GO:0020037 - heme binding, GO:0031408 - oxylipin biosynthetic process, GO:0047987 - hydroperoxide dehydratase activity, GO:0051365 - cellular response to potassium ion starvation	TO:0000261 - insect damage resistance, TO:0000031 - silicon sensitivity, TO:0002668 - jasmonic acid content, TO:0000175 - bacterial blight disease resistance, TO:0000224 - iron sensitivity, TO:0000008 - potassium sensitivity	
8766	AOC	OsAOC, AOC1, OsAOC1, HB, CPM2	ALLENE OXIDE CYCLASE	allene oxide cyclase, coleoptile photomorphogenesis 2, hebiba, hebibaAOC	ALLENE OXIDE CYCLASE	cpm2, hebiba, hb, cpm2/osaoc, osaoc	3	LOC_Os03g32314. AJ493664. The hebiba mutant is due to a genomic deletion of 169 kb, which contains 26 annotated genes. One of the genes encodes allene oxide cyclase (AOC), part of the jasmonate biosynthetic pathway, loss of which leads to jasmonate deficiency (Gutjahr et al. 2015).	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os03g0438100	LOC_Os03g32314.1		0		GO:0046423 - allene-oxide cyclase activity, GO:0005886 - plasma membrane, GO:0009269 - response to desiccation, GO:0009409 - response to cold, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0010319 - stromule, GO:0016853 - isomerase activity, GO:0009695 - jasmonic acid biosynthetic process, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009941 - chloroplast envelope, GO:0009620 - response to fungus	TO:0002668 - jasmonic acid content, TO:0000074 - blast disease, TO:0000544 - mesocotyl length, TO:0001007 - coleoptile length	
8767	LOX-L2	OsLOX-L2, LOX1.1, LOX L-2, LOX-2	LIPOXYGENASE L2	Lipoxygenase 2, Lipoxygenase L-2	LIPOXYGENASE L2		3	EC=1.13.11.12 P29250. X64396. KC611028-KC611039 (O. sativa and wild rice species, partial cds). AF464895.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0738600	LOC_Os03g52860.1		0		GO:0009507 - chloroplast, GO:0055114 - oxidation reduction, GO:0016165 - lipoxygenase activity, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0009753 - response to jasmonic acid stimulus, GO:0048364 - root development, GO:0051707 - response to other organism, GO:0009737 - response to abscisic acid stimulus, GO:0031408 - oxylipin biosynthetic process, GO:0005506 - iron ion binding, GO:0009611 - response to wounding, GO:0005737 - cytoplasm		
8768	LOX2	LOX-2	LIPOXYGENASE 2		LIPOXYGENASE 2				 Seed - Physiological traits - Taste				0		GO:0005506 - iron ion binding, GO:0051707 - response to other organism, GO:0005737 - cytoplasm, GO:0016165 - lipoxygenase activity, GO:0055114 - oxidation reduction, GO:0031408 - oxylipin biosynthetic process, GO:0009611 - response to wounding		
8769	LOX1	LOX-1	LIPOXYGENASE 1		LIPOXYGENASE 1				 Seed - Physiological traits - Taste				0		GO:0031408 - oxylipin biosynthetic process, GO:0055114 - oxidation reduction, GO:0016165 - lipoxygenase activity, GO:0005506 - iron ion binding		
8770	LOX-RLL	OsLOX-RLL	LIPOXYGENASE RLL		LIPOXYGENASE RLL		8		 Biochemical character				0		GO:0031408 - oxylipin biosynthetic process, GO:0016165 - lipoxygenase activity, GO:0055114 - oxidation reduction, GO:0005506 - iron ion binding		
8771	LOX-RCI1	OsLOX-RCI1	LIPOXYGENASE RCI1		LIPOXYGENASE RCI1				 Biochemical character				0		GO:0005506 - iron ion binding, GO:0031408 - oxylipin biosynthetic process, GO:0016165 - lipoxygenase activity, GO:0055114 - oxidation reduction		
8772	R9-LOX1	Osr9-LOX1, OsLOX3, LOX3	R9-LIPOXYGENASE 1	9-lipoxygenase 1, lipoxygenase 3	R9-LIPOXYGENASE 1		3	a chloroplast-localized 9-LOX. AB099850. FJ660621, FJ660622, AP008209 (27849405-27853695). Q76I22. GO:1900366: negative regulation of defense response to insect. GO:1990136: linoleate 9S-lipoxygenase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os03g0699700	LOC_Os03g49260.2, LOC_Os03g49260.1		0		GO:0016165 - lipoxygenase activity, GO:0009507 - chloroplast, GO:0005506 - iron ion binding, GO:0034440 - lipid oxidation, GO:0031408 - oxylipin biosynthetic process, GO:0010311 - lateral root formation	TO:0002668 - jasmonic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0000164 - stress trait, TO:0000424 - brown planthopper resistance, TO:0000476 - growth hormone content, TO:0000401 - plant growth hormone sensitivity	
8773	EMF1	OsEMF1	EMBRYONIC FLOWER 1				1		 Seed - Morphological traits - Embryo				0		GO:0048573 - photoperiodism, flowering		
8774	OGR1	ogr1	OPAQUE AND GROWTH RETARDATION 1	opaque and growth retardation 1	PENTATRICOPEPTIDE REPEAT-DYW PROTEIN		12	FJ527826. pentatricopeptide repeat-DYW protein. RNA editing in mitochondria.	 Biochemical character	Os12g0270200	LOC_Os12g17080.1		0		GO:0009451 - RNA modification		
8775	MEF9		MITOCHONDRIAL EDITING FACTOR 9		MITOCHONDRIAL EDITING FACTOR 9				 Biochemical character				0		GO:0009451 - RNA modification		
8776	YL1	MTC, YGL8, OsCRD1, CRD1, CRD, YL-1, PNZIP	YELLOW-LEAF 1	Mg-Proto IX monomethylester cyclase, yellow-green leaf 8, Copper Response Defect 1, Yellow-Leaf 1, PHARBITIS NIL LEUCINE ZIPPER	PHARBITIS NIL LEUCINE ZIPPER	ygl8, yl-1	1	GO:0036068: light-independent chlorophyll biosynthetic process. GO:1901401: regulation of tetrapyrrole metabolic process. LOC_Os01g17170. a catalytic subunit of magnesium-protoporphyrin IX monomethyl ester cyclase (MgPME cyclase). TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll	Os01g0279100	LOC_Os01g17170.2, LOC_Os01g17170.1		0		GO:0009416 - response to light stimulus, GO:0009534 - chloroplast thylakoid, GO:0009507 - chloroplast, GO:0006364 - rRNA processing, GO:0015995 - chlorophyll biosynthetic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0003677 - DNA binding, GO:0009658 - chloroplast organization, GO:0019344 - cysteine biosynthetic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0031408 - oxylipin biosynthetic process, GO:0010207 - photosystem II assembly, GO:0019216 - regulation of lipid metabolic process, GO:0048529 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, GO:0015979 - photosynthesis, GO:0009941 - chloroplast envelope, GO:0010027 - thylakoid membrane organization, GO:0005506 - iron ion binding, GO:0009668 - plastid membrane organization	TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000316 - photosynthetic ability, TO:0000298 - chlorophyll ratio, TO:0000293 - chlorophyll-a content	PO:0009047 - stem , PO:0025034 - leaf , PO:0009049 - inflorescence 
8777	AL12	al12	ALBINO 12				8	The leaves of the albino mutant al12 were white before the 3-leaf-stage at al12 were white before the 3-leaf-stage at a low temperature (<24C) and then gradually turned green. The gene al12 was located between the two close SSR markers RM5068 and RM3702.	 Coloration - Chlorophyll			GR:0060025	0		GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	
8778	GM9	Gm9, Gm9(t)	GALL MIDGE RESISTANCE 9	Gall midge resistance-9				PO:0009011; plant structure ; PO:0000003; whole plant. 	 Tolerance and resistance - Insect resistance			GR:0061089	0		GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8779	GM10	Gm10, Gm10(t)	GALL MIDGE RESISTANCE 10	Gall midge resistance-10				PO:0009011; plant structure ; PO:0000003; whole plant. 	 Tolerance and resistance - Insect resistance			GR:0061090	0		GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8780	BPH21	Bph21(t)	BROWN PLANTHOPPER RESISTANCE 21 				12	BPH21 was introgressed from the wild rice species O. minuta (BC genome). KX681951.	 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8781	BPH20	Bph20(t)	BROWN PLANTHOPPER RESISTANCE 20  				4		 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8782	BPH13	Bph13(t)	BROWN PLANT HOPPER RESISTANT 13				3		 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8783	BU1	ILI4, OsILI4, OsBU1, BU1/ILI4, OsbHLH172, bHLH172	BRASSINOSTEROID UPREGULATED 1	BRASSINOSTEROID UPREGULATED1, Increased Leaf Inclination4, BR upregulated 1, basic helix-loop-helix protein 172			6	LOC_Os06g12210. Q0DDF6. Transcription level is upregulated by BL application to rice. Helix-loop-helix protein. the closest homolog of PGL2.	 Vegetative organ - Leaf,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Other	Os06g0226500	LOC_Os06g12210.1		0		GO:0009741 - response to brassinosteroid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0046983 - protein dimerization activity, GO:0040008 - regulation of growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009723 - response to ethylene stimulus	TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000397 - grain size, TO:0002688 - leaf lamina joint bending, TO:0000172 - jasmonic acid sensitivity, TO:0000734 - grain length, TO:0000173 - ethylene sensitivity	PO:0005052 - plant callus 
8784	BPH22	Bph22(t)	BROWN PLANTHOPPER RESISTANCE 22				6	Through single marker analysis ,it was found that the BPH resistant locus Bph22(t) was located at a distance of 6.7cM from the SSR markers RM 585,RM 225,RM 584,   RM 19429 and 12.7cM from RM 204 on the long arm of chromosome 6 with a probability value of 0.00.	 Tolerance and resistance - Insect resistance				0	6.7	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8785	CSA	csa	CARBON STARVED ANTHER		CSA PROTEIN		1	LOC_Os01g16810. CSA encodes a rice R2R3 MYB transcription factor that regulates sugar partitioning from leaves to anthers required for the production of functional pollens. CSA regulates sugar partitioning from leaves to anthers. A mutant generated from 9522 cultivar in Shanghai. AP000837. R2R3-MYB. One of the candidate genes for the hybrid sterility gene S40 locus (Chen et al. 2017).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0274800	LOC_Os01g16810.1		0		GO:0008643 - carbohydrate transport, GO:0003700 - transcription factor activity		
8786	GM11	Gm11t, Gm11(t), Gm11	GALL MIDGE RESISTANCE 11				12	A new gene conferring resistance to Asian rice gall midge biotypes 1,2,3 and 4. The gene is mapped between two flanking SSR markers, RM28574 and RM28706. PO:0009011; plant structure ; PO:0000003; whole plant. 	 Tolerance and resistance - Insect resistance			GR:0061091	0		GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8787	SDR4	Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L	SEED DORMANCY 4	Sdr4-like		Sdr4-n, Sdr4-k, Sdr4-k'	7	AB506455(Sdr4-k, Kasalath), AB510199(Sdr4-n, Nipponbare), PO:0009010; seed. GRO:0007045; 09-mature grain stage. Putative zinc finger protein. Pre-harvest sprouting resistance. LOC_Os07g39700.	 Seed - Physiological traits - Dormancy	Os07g0585700	LOC_Os07g39700.1	GR:0060859	0		GO:0009738 - abscisic acid mediated signaling, GO:0009845 - seed germination	TO:0000253 - seed dormancy, TO:0000619 - vivipary, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed 
8788	COE1	coe1	COMMISSURAL VEIN EXCESSIVE1	commissural vein excessive1	LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE	coe1-1, coe1-2, coe1-3	8	The coe1 mutants indicate the narrower interval of commissural vein and the cluster-like formation of commissural vein. 	 Vegetative organ - Leaf	Os08g0442700	LOC_Os08g34380.2, LOC_Os08g34380.1		0				
8789	SSG		SUBSTANDARD STARCH GRAIN					Mutants defective in starch grain morphology	 Seed - Morphological traits - Endosperm				0				
8790	RDD1	OsDof2, OsDof9, Dof9, OsDof-9	RICE DOF DAILY FLUCTUATIONS 1	Dof zinc factor 9, Dof transcription factor 9		Rdd1-1	2	Rdd1 is a putative Dof transcription factor gene that is associated with plant growth, grain size and flowering time in rice. AB028130. LOC_Os02g45200. OsDof9 in Lijavetzky et al. 2003 and Zhang et al. 2015.	 Seed,  Other	Os02g0673700	LOC_Os02g45200.4, LOC_Os02g45200.3, LOC_Os02g45200.2, LOC_Os02g45200.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8791	RDD2	OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3	RICE DOF DAILY FLUCTUATIONS 2	AOBP-like protein gene, Rdd1-like gene, DNA binding of the One Finger 1, DNA binding with one finger protein 1, Dof protein 1, CYCLING DOF FACTOR 3, Dof zinc factor 23, Dof transcription factor 23		osdof1	7	AY224430. LOC_Os07g48570. OsDof1 in Park et al. 2014.	 Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os07g0685000	LOC_Os07g48570.1		0		GO:0003677 - DNA binding, GO:0009611 - response to wounding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009620 - response to fungus, GO:0008270 - zinc ion binding	TO:0000164 - stress trait, TO:0000074 - blast disease	
8792	RDD3	OsDof26, Dof26, OsDof-26	RICE DOF DAILY FLUCTUATIONS 3	Dof zinc factor 26, Dof transcription factor 26			10	similar to H-protein promoter binding factor-2a (nucleotide positions 102701-102537 and 101680-100454 AE017092. LOC_Os10g26620.	 Seed,  Other	Os10g0406300	LOC_Os10g26620.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8793	RDD4	OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12	RICE DOF DAILY FLUCTUATIONS 4	CYCLING DOF FACTOR 1, Dof zinc factor 12, Dof transcription factor 12			3	LOC_Os03g07360. AY224429. putative H-protein promoter binding factor-2a.	 Seed,  Tolerance and resistance - Stress tolerance,  Other	Os03g0169600	LOC_Os03g07360.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009646 - response to absence of light, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding	TO:0000276 - drought tolerance, TO:0000460 - light intensity sensitivity	
8794	DOF1	OsDof1	DNA BINDING WITH ONE FINGER 1					AB028129	 Biochemical character				0				
8795	DOF4	OsDof4, OsDof8, Dof8, OsDof-8, DOF8	DNA BINDING WITH ONE FINGER 4	Dof zinc factor 8, Dof transcription factor 8			2	AB028132. C91785, AU172851. LOC_Os02g49440. 	 Tolerance and resistance - Stress tolerance,  Other	Os02g0726300	LOC_Os02g49440.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006950 - response to stress	TO:0000432 - temperature response trait	
8796	DOF5	OsDof5	DNA BINDING WITH ONE FINGER 5					AB028133	 Biochemical character				0				
8797	DOF6	OsDof6, Dof6, OsDof-6	DNA BINDING WITH ONE FINGER 6	Dof zinc factor 6, Dof transcription factor 6, C2C2-Dof transcription factor			1	LOC_Os01g55340. HQ858825.		Os01g0758200 	LOC_Os01g55340.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8798	DOF7	OsDof7, Dof7, OsDof-7	DNA BINDING WITH ONE FINGER 7				2	LOC_Os02g47810.	 Biochemical character	Os02g0707200	LOC_Os02g47810.1		0		GO:0010067 - procambium histogenesis, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010087 - phloem or xylem histogenesis		
8802	DOF11	OsDof11, Dof11, OsDof-11	DNA BINDING WITH ONE FINGER 11	Dof zinc factor 11, Dof transcription factor 11			3	LOC_Os03g38870.	 Other	Os03g0585600	LOC_Os03g38870.1		0		GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0009536 - plastid		
8803	DOF13	OsDof13, Dof13, OsDof-13	DNA BINDING WITH ONE FINGER 13	Dof zinc factor 13, Dof transcription factor 13			3	LOC_Os03g42200.	 Other	Os03g0619151	LOC_Os03g42200.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8804	DOF14	OsDof14, Dof14, OsDof-14	DNA BINDING WITH ONE FINGER 14 	Dof zinc factor 14, Dof transcription factor 14			3	LOC_Os03g16850.	 Other	Os03g0276300	LOC_Os03g16850.1		0		GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
8805	SP3	OsDof15, Dof15, OsDof-15, DOF15	SHORT PANICLE 3	Dof zinc factor 15, Dof transcription factor 15, DNA BINDING WITH ONE FINGER 15, Short Panicle 3		sp3	3	LOC_Os03g55610.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching,  Other	Os03g0764900 	LOC_Os03g55610.1		0		GO:0009690 - cytokinin metabolic process, GO:0010081 - regulation of inflorescence meristem growth, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000145 - internode length, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000557 - secondary branch number, TO:0006032 - panicle size, TO:0000396 - grain yield, TO:0000373 - inflorescence anatomy and morphology trait, TO:0002660 - cytokinin content, TO:0000456 - spikelet number, TO:0000050 - inflorescence branching	PO:0009049 - inflorescence 
8806	DOF16	OsDof16, Dof16, OsDof-16	DNA BINDING WITH ONE FINGER 16	Dof zinc factor 16, Dof transcription factor 16			3	LOC_Os03g60630.	 Other	Os03g0821200 	LOC_Os03g60630.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8807	DOF17	OsDof17, Dof17, OsDof-17	DNA BINDING WITH ONE FINGER 17	Dof zinc factor 17, Dof transcription factor 17			4	LOC_Os04g58190.	 Other	Os04g0678400 	LOC_Os04g58190.3, LOC_Os04g58190.2, LOC_Os04g58190.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8808	DOF18	OsDof18, Dof18, OsDof-18	DNA BINDING WITH ONE FINGER 18	Dof zinc factor 18, Dof transcription factor 18			4	LOC_Os04g47990.	 Other	Os04g0567800 	LOC_Os04g47990.2, LOC_Os04g47990.1		0		GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
8809	DOF19	OsDof19, Dof19, OsDof-19	DNA BINDING WITH ONE FINGER 19	Dof zinc factor 19, Dof transcription factor 19			5	LOC_Os05g02150.	 Other	Os05g0112200 	LOC_Os05g02150.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8810	DOF20	OsDof20, Dof20, OsDof-20	DNA BINDING WITH ONE FINGER 20	Dof zinc factor 20, Dof transcription factor 20			6	LOC_Os06g17410.	 Other	Os06g0284500 	LOC_Os06g17410.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8811	DOF21	OsDof21, Dof21, OsDof-21, OsCDF2, CDF2	DNA BINDING WITH ONE FINGER 21	Dof zinc factor 21, Dof transcription factor 21, CYCLING DOF FACTOR 2			7	LOC_Os07g13260.	 Other	Os07g0236700 	LOC_Os07g13260.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8812	DOF22	OsDof22, Dof22, OsDof-22	DNA BINDING WITH ONE FINGER 22	Dof zinc factor 22, Dof transcription factor 22			7	LOC_Os07g32510.	 Other	Os07g0508900	LOC_Os07g32510.1		0		GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
8813	DOF24	OsDof24, Dof24, OsDof-24	DNA BINDING WITH ONE FINGER 24 	Dof zinc factor 24, Dof transcription factor 24			8	LOC_Os08g38220.	 Other	Os08g0490100 	LOC_Os08g38220.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8814	DOF25	OsDof25, Dof25, OsDof-25	DNA BINDING WITH ONE FINGER 25	Dof zinc factor 25, Dof transcription factor 25			9	LOC_Os09g29960.	 Other	Os09g0475800 	LOC_Os09g29960.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8815	DOF27	OsDof27, Dof27, OsDof-27	DNA BINDING WITH ONE FINGER 27	Dof zinc factor 27, Dof transcription factor 27			10	LOC_Os10g35300. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening. 	 Other	Os10g0496000 	LOC_Os10g35300.2, LOC_Os10g35300.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8816	DOF28	OsDof28, Dof28, OsDof-28	DNA BINDING WITH ONE FINGER 28	Dof zinc factor 28, Dof transcription factor 28			12	LOC_Os12g38200.	 Other	Os12g0569900 	LOC_Os12g38200.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8817	DOF29	OsDof29, Dof29, OsDof-29	DNA BINDING WITH ONE FINGER 29	Dof zinc factor 29, Dof transcription factor 29			5	LOC_Os05g36900.	 Other	Os05g0440000 	LOC_Os05g36900.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8818	DOF30	OsDof30, Dof30, OsDof-30	DNA BINDING WITH ONE FINGER 30	Dof zinc factor 30, Dof transcription factor 30			12	LOC_Os12g39990.	 Other	Os12g0590700 	LOC_Os12g39990.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8820	PRR73	OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11	PSEUDO-RESPONSE REGULATOR 73	A-type RR 20, pseudo-response regulator 3, CCT domain-containing gene 11, CCT (CO, CO-LIKE and TOC1) domain protein 11, CCT domain protein 11			3	LOC_Os03g17570. AB189040, AB189043. Q10N34, A2XFB7. GO:0035556: intracellular signal transduction. a rice ortholog of Arabidopsis gene for circadian clock component. ortholog of Arabidopsis circadian gene PRR7.	 Reproductive organ - Heading date	Os03g0284100	LOC_Os03g17570.6, LOC_Os03g17570.5, LOC_Os03g17570.4, LOC_Os03g17570.3, LOC_Os03g17570.2, LOC_Os03g17570.1		0		GO:0048511 - rhythmic process, GO:0000156 - two-component response regulator activity, GO:0005634 - nucleus, GO:0007623 - circadian rhythm, GO:0048573 - photoperiodism, flowering, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent	TO:0000137 - days to heading	
8821	PRR95	OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33	PSEUDO-RESPONSE REGULATOR 95	pseudo-response regulator 2, CCT domain-containing gene 33, CCT (CO, CO-LIKE and TOC1) domain protein 33, CCT domain protein 33			9	AB189041. Q689G6. a rice ortholog of Arabidopsis gene for circadian clock component. OsCaM1 target gene.	 Tolerance and resistance - Stress tolerance	Os09g0532400	LOC_Os09g36220.2, LOC_Os09g36220.1		0		GO:0000156 - two-component response regulator activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048511 - rhythmic process, GO:0007623 - circadian rhythm		
8822	PRR59	OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38	PSEUDO-RESPONSE REGULATOR 59	pseudo-response regulator 5, CCT domain-containing gene 38, CCT (CO, CO-LIKE and TOC1) domain protein 38, CCT domain protein 38			11	LOC_Os11g05930. a rice ortholog of Arabidopsis gene for circadian clock component.		Os11g0157600	LOC_Os11g05930.5, LOC_Os11g05930.4, LOC_Os11g05930.3, LOC_Os11g05930.2, LOC_Os11g05930.1		0		GO:0007623 - circadian rhythm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000156 - two-component response regulator activity		
8823	ZTL1	OsZTL1, OsFbox066, OsFbox66, Os_F0484	ZEITLUPE 1	F-box protein 66			2	LOV, F-box, Kelch repeat. LOC_Os02g05700. Os_F0484 in Hua et al. 2011.		Os02g0150800	LOC_Os02g05700.2, LOC_Os02g05700.1		0				
8824	ZTL2	OsZTL2, OsFbox325, Os_F0374, ZTL1	ZEITLUPE 2	F-box protein 325			6	LOC_Os06g47890. LOV, F-box, Kelch repeat. ZTL1 in Matsuzaki et al. 2015. a rice ortholog of Arabidopsis gene for circadian clock component.		Os06g0694000	LOC_Os06g47890.2, LOC_Os06g47890.1		0		GO:0007623 - circadian rhythm		
8825	FKF1	OsFbox609, Os_F0370, OsFKF1	FLAVIN-BINDING, KELCH REPEAT, F BOX 1	"F-box protein 609, \"FLAVIN-BINDING, KELCH REPEAT, F-BOX 1\""		osfkf1	11	LOC_Os11g34460. LOV, F-box, Kelch repeat. a rice ortholog of Arabidopsis gene for circadian clock component.	 Reproductive organ - Heading date	Os11g0547000	LOC_Os11g34460.3, LOC_Os11g34460.2, LOC_Os11g34460.1		0		GO:0007623 - circadian rhythm, GO:0010228 - vegetative to reproductive phase transition	TO:0002616 - flowering time	
8826	UAM1	OsUAM1, RGP-1, Osgls1	UDP-ARABINOPYRANOSE MUTASE 1	UDP-Arabinopyranose Mutase 1, reversibly glycosylated polypeptide-1			3	LOC_Os03g40270. Q8H8T0. GO:0052691:UDP-arabinopyranose mutase activity. AF294725, AJ011078, Y18624.	 Biochemical character	Os03g0599800	LOC_Os03g40270.1		0		GO:0016866 - intramolecular transferase activity, GO:0030244 - cellulose biosynthetic process, GO:0005794 - Golgi apparatus		
8827	UAM2	OsUAM2	UDP-ARABINOPYRANOSE MUTASE 2	UDP-Arabinopyranose Mutase 2			4	LOC_Os04g56520. Q7FAY6. GO:0052691:UDP-arabinopyranose mutase activity.	 Biochemical character	Os04g0660400	LOC_Os04g56520.2, LOC_Os04g56520.1		0		GO:0005794 - Golgi apparatus, GO:0009651 - response to salt stress, GO:0030244 - cellulose biosynthetic process		
8828	UAM3	OsUAM3	UDP-ARABINOPYRANOSE MUTASE 3	UDP-Arabinopyranose Mutase 3			7	LOC_Os07g41360. Q6Z4G3. GO:0052691:UDP-arabinopyranose mutase activity. GO:0035884: arabinan biosynthetic process.	 Biochemical character	Os07g0604800	LOC_Os07g41360.1		0		GO:0009555 - pollen development, GO:0043667 - pollen wall, GO:0043668 - exine, GO:0010246 - rhamnogalacturonan I biosynthetic process, GO:0030244 - cellulose biosynthetic process, GO:0042546 - cell wall biogenesis, GO:0010208 - pollen wall assembly, GO:0016866 - intramolecular transferase activity, GO:0005794 - Golgi apparatus		PO:0001007 - pollen development stage 
8829	MKK1	OsMKK1, OsMEK2	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1	MAPK kinase 1		osmkk1	6	EF529623(OsMKK1), DQ989216(OmMKK1-1), DQ989217(OmMKK1-2). LOC_Os06g05520.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0147800	LOC_Os06g05520.1		0		GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide	TO:0006001 - salt tolerance, TO:0000160 - UV light sensitivity, TO:0000175 - bacterial blight disease resistance	
8830	MKK3	OsMKK3	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3			mkk3	6	EF529623 (Indica cultivar).	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance	Os06g0473200	LOC_Os06g27890.1, LOC_Os06g27890.4, LOC_Os06g27890.3, LOC_Os06g27890.2		0		GO:2000033 - regulation of seed dormancy, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide	TO:0000253 - seed dormancy, TO:0000175 - bacterial blight disease resistance	
8831	SMG1	OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1	SMALL GRAIN 1	MAPK kinase 4, mitogen-activated protein kinase kinase 4, small grain1	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4	smg1, smg1-1, smg1-2	2	LOC_Os02g54600. DQ848674. Gene Expression Omnibus database: GSE15613. TO:0000970: panicle density. TO:0000847: panicle inflorescence morphology trait.	 Biochemical character,  Vegetative organ - Root,  Seed - Morphological traits,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os02g0787300	LOC_Os02g54600.1		0		GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0010229 - inflorescence development, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0048364 - root development, GO:0008283 - cell proliferation, GO:0009741 - response to brassinosteroid stimulus, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0000165 - MAPKKK cascade, GO:0009737 - response to abscisic acid stimulus, GO:0010200 - response to chitin	TO:0000454 - stem borer resistance, TO:0000447 - filled grain number, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000160 - UV light sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000656 - root development trait, TO:0000439 - fungal disease resistance, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0000734 - grain length, TO:0000175 - bacterial blight disease resistance, TO:0002669 - diterpenoid phytoalexin content, TO:0000615 - abscisic acid sensitivity, TO:0000040 - panicle length, TO:0002677 - brassinosteroid sensitivity	PO:0001083 - inflorescence development stage , PO:0007520 - root development stage 
8832	MKK6	OsMKK6, OsMEK1	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6	MAPK kinase 6	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6		1	DQ779790(Indica culativar). AF216314. Q5QN75.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0510100	LOC_Os01g32660.5, LOC_Os01g32660.4, LOC_Os01g32660.3, LOC_Os01g32660.2, LOC_Os01g32660.1		0		GO:0004674 - protein serine/threonine kinase activity, GO:0009751 - response to salicylic acid stimulus, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0042742 - defense response to bacterium	TO:0002669 - diterpenoid phytoalexin content, TO:0000074 - blast disease, TO:0000160 - UV light sensitivity, TO:0000175 - bacterial blight disease resistance	
8833	MKK10-2	OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMPKK10-2D, MPKK10-2D, MPKK10.2	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-2	MAPK kinase 10.2			3	EF666056 (Indica cultivar). LOC_Os03g12390.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0225100	LOC_Os03g12390.1		0		GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000203 - bacterial leaf streak disease resistance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity	
8834	MKK5	OsMKK5, BUD1, OsBUD1	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5	MAPK kinase 5			6		 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os06g0191300	LOC_Os06g09180.1		0		GO:0009409 - response to cold, GO:0009735 - response to cytokinin stimulus, GO:0048364 - root development, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance, TO:0000656 - root development trait	PO:0007520 - root development stage 
8835	MKK10-1	OsMKK10-1, MPKK10.1	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-1				2	LOC_Os02g46760. GO:0023014: signal transduction by protein phosphorylation.	 Biochemical character	Os02g0694900	LOC_Os02g46760.1		0		GO:0004674 - protein serine/threonine kinase activity, GO:0031098 - stress-activated protein kinase signaling pathway, GO:0007346 - regulation of mitotic cell cycle, GO:0032147 - activation of protein kinase activity, GO:0005524 - ATP binding		
8836	MKK10-3	MPKK10.3	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-3 				3	LOC_Os03g50550. GO:0023014: signal transduction by protein phosphorylation.	 Biochemical character	Os03g0713500	LOC_Os03g50550.1		0		GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0032147 - activation of protein kinase activity, GO:0031098 - stress-activated protein kinase signaling pathway, GO:0007346 - regulation of mitotic cell cycle		
8837	EMF2A	OsEMF2a, OsEMF2, EMF2	EMBRYONIC FLOWER 2A	EMBRYONIC FLOWER 2			4	Polycomb group protein, Supressor of Zeste(12) homolog. AY321106. KC609074-KC609086 (O. sativa and wild rice species, partial cds).	 Seed - Morphological traits - Embryo	Os04g0162100	LOC_Os04g08034.6, LOC_Os04g08034.5, LOC_Os04g08034.4, LOC_Os04g08034.3, LOC_Os04g08034.2, LOC_Os04g08034.1		0		GO:0009910 - negative regulation of flower development, GO:0006349 - genetic imprinting, GO:0008270 - zinc ion binding, GO:0005622 - intracellular	TO:0006020 - shoot apical meristem development, TO:0000622 - flower development trait	
8838	EMF2B	OsEMF2b, EMF2b	EMBRYONIC FLOWER 2B	EMBRYONIC FLOWER 2b			9	Polycomb group protein, Suppressor of Zeste(12) homolog. a component of polycomb repression complex 2. Su(z)12 homolog. a PRC2 (Polycomb repressive complex 2) subunit.	 Seed - Morphological traits - Embryo	Os09g0306800	LOC_Os09g13630.1		0		GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0020056 - tegmen 
8839	CLF	OsSET24, SDG711, EZ1, OsCLF	CURLY LEAF	SET protein 24, polycomb protein EZ1, SET DOMAIN GROUP 711		sdg711	6	Polycomb group protein, Enhancer of Zeste(E(z)) like gene, E(z)-like gene. AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). LOC_Os06g16390. H3K27 methyltransferase. a polycom repressive complex 2(PRC2) key subunit.	 Vegetative organ - Leaf,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os06g0275500	LOC_Os06g16390.1		0		GO:0003700 - transcription factor activity, GO:0048574 - long-day photoperiodism, flowering, GO:0010229 - inflorescence development, GO:0009908 - flower development, GO:0031047 - gene silencing by RNA, GO:0010228 - vegetative to reproductive phase transition, GO:0016571 - histone methylation, GO:0009294 - DNA mediated transformation, GO:0031519 - PcG protein complex, GO:0003677 - DNA binding, GO:0003727 - single-stranded RNA binding, GO:0010048 - vernalization response, GO:0006349 - genetic imprinting, GO:0009965 - leaf morphogenesis, GO:0006306 - DNA methylation, GO:0045857 - negative regulation of molecular function, epigenetic, GO:0051567 - histone H3-K9 methylation, GO:0009790 - embryonic development, GO:0048586 - regulation of long-day photoperiodism, flowering	TO:0006032 - panicle size, TO:0002616 - flowering time, TO:0000621 - inflorescence development trait	PO:0000230 - inflorescence meristem , PO:0001083 - inflorescence development stage , PO:0009089 - endosperm , PO:0020056 - tegmen 
8840	IEZ1	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718	ENHANCER OF ZESTE 1	indica Enhancer of Zeste 1, SET protein 15			3	AF407010, AJ421722. HQ881586. Polycomb group protein, Enhancer of Zeste(E(z)) like gene, E(z)-like gene. a homolog of Arabidopsis PRC2. ortholog of Arabidopsis SWN. GO:1990110: callus formation.	 Reproductive organ - Heading date,  Seed,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0307800	LOC_Os03g19480.1		0		GO:0003727 - single-stranded RNA binding, GO:0003677 - DNA binding, GO:0006349 - genetic imprinting, GO:0009960 - endosperm development, GO:0031519 - PcG protein complex, GO:0048575 - short-day photoperiodism, flowering, GO:0048587 - regulation of short-day photoperiodism, flowering, GO:0009790 - embryonic development	TO:0000428 - callus induction, TO:0002616 - flowering time	PO:0020056 - tegmen , PO:0009089 - endosperm 
8841	FIE1	OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154	FERTILIZATION-INDEPENDENT ENDOSPERM 1	FERTILIZATION-INDEPENDENT ENDOSPERM1, Fertilization-Independent Endosperm 1, dwarf and flower aberrant mutant, endosperm-specific gene 116		df, Epi-df, osfie1	8	Polycomb group protein, Extra Sex Combs (ESC)-like genes. an OsWD40 superfamily member protein. GO:2000014 regulation of endosperm development. Gene Expression Omnibus database: accession number GSE39298. df (Epi-df) might be an epigenetic mutant that is heritable but unstable with a low frequency of spontaneous reversion back to a normal. This allele causes a dwarf stature and various floral defects. LOC_Os08g04290.	 Vegetative organ - Culm,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0137250	LOC_Os08g04290.1		0		GO:0043078 - polar nucleus, GO:0006349 - genetic imprinting, GO:0016571 - histone methylation, GO:0009409 - response to cold, GO:0009790 - embryonic development, GO:0000003 - reproduction, GO:0048316 - seed development	TO:0002673 - amino acid content, TO:0000455 - seed set percent, TO:0002653 - endosperm storage protein content, TO:0000391 - seed size, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009089 - endosperm , PO:0020056 - tegmen 
8842	FIE2	OsFIE2, FIE, OsWD40-153	FERTILIZATION-INDEPENDENT ENDOSPERM 2	FERTILIZATION-INDEPENDENT ENDOSPERM2, Fertilization-Independent Endosperm 2, Polycomb protein OsFIE2			8	Polycomb group protein, Extra Sex Combs (ESC)-like gene. GO:2000014 regulation of endosperm development. AY456262. C26788, AU164097, C26788, AU057691.	 Seed - Morphological traits - Endosperm,  Character as QTL - Yield and productivity	Os08g0137100	LOC_Os08g04270.3, LOC_Os08g04270.2, LOC_Os08g04270.1		0		GO:0009409 - response to cold, GO:0043078 - polar nucleus, GO:0000003 - reproduction, GO:0016571 - histone methylation, GO:0006349 - genetic imprinting		PO:0020056 - tegmen 
8843	MET1A	OsMET1a, OsMET1-1, MET1a, MET1-1	METHYLTRANSFERASE 1A	DNA methyltransferase 1-1	DNA METHYLTRANSFERASE 1A		3	Alternative splicing. DNA MTase. AF462029. Q7Y1I7. GO:0090116 C-5 methylation of cytosine. LOC_Os03g58400.	 Biochemical character	Os03g0798300	LOC_Os03g58400.1		0		GO:0005515 - protein binding, GO:0006349 - genetic imprinting, GO:0016458 - gene silencing, GO:0010424 - DNA methylation on cytosine within a CG sequence, GO:0010216 - maintenance of DNA methylation, GO:0009294 - DNA mediated transformation, GO:0005634 - nucleus, GO:0009910 - negative regulation of flower development, GO:0003886 - DNA (cytosine-5-)-methyltransferase activity, GO:0003677 - DNA binding, GO:0010069 - zygote asymmetric cytokinesis in the embryo sac		
8844	MET1B	OsMET1b, OsMET1-2, MET1b, MET1	METHYLTRANSFERASE 1B	DNA methyltransferase 1-2	DNA METHYLTRANSFERASE 1B	met1b	7	Alternative splicing. DNA MTase. BK001405, AP003855. B1Q3J6. a major CG methylase. LOC_Os07g08500. MET1 in in Li et al. 2017. up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character	Os07g0182900	LOC_Os07g08500.1		0		GO:0010424 - DNA methylation on cytosine within a CG sequence, GO:0032502 - developmental process, GO:0009790 - embryonic development, GO:0003682 - chromatin binding, GO:0005515 - protein binding, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006306 - DNA methylation, GO:0006349 - genetic imprinting, GO:0010216 - maintenance of DNA methylation, GO:0009793 - embryonic development ending in seed dormancy, GO:0003886 - DNA (cytosine-5-)-methyltransferase activity	TO:0000357 - growth and development trait	
8845	EF6	ef6	EARLINESS 6				7		 Reproductive organ - Heading date				0		GO:0009648 - photoperiodism	TO:0000137 - days to heading	
8847	PI41	Pi41(t), Pi41	PYRICULARIA ORYZAE RESISTANCE 41 	Pyricularia grisea resistance 41, Magnaporthe grisea resistance 41, Blast resistance 41			12	Original strain is 93-11 (Indica).	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8848	PI38	Pi38, Pi-38	PYRICULARIA ORYZAE RESISTANCE 38	Magnaporthe grisea resistance 38, Blast resistance 38			11	Original line is Tadukan (Indica). Map position (79.1-88.7 cM).	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8849	PI32	Pi-32(t), Pi32(t)*, Pi32(t)	PYRICULARIA ORYZAE RESISTANCE 32	Magnaporthe grisea resistance 32, Blast resistance 32			12	Original line is IR64 (Indica).	 Tolerance and resistance - Disease resistance				0	47.5	GO:0009620 - response to fungus		
8850	PI31	Pi-31(t), Pi31(t)*, Pi31(t)	PYRICULARIA ORYZAE RESISTANCE 31	Magnaporthe grisea 31, Blast resistance 31			12	Original line is IR64 (Indica). 	 Tolerance and resistance - Disease resistance				0	44.3	GO:0009620 - response to fungus		
8852	BPH23	Bph23(t)	BROWN PLANTHOPPER RESISTANCE 23						 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8853	BPH24	Bph24(t)	BROWN PLANTHOPPER RESISTANCE 24						 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8854	ERF59	OsERF#059, OsERF059, OsERF59, EBL1, AP2/EREBP#006, AP2/EREBP6	ETHYLENE RESPONSE FACTOR 59	ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN1-LIKE 1, ethylene response factor 59, APETALA2/ethylene-responsive element binding protein 6	ETHYLENE RESPONSE FACTOR 59	Ebl1-1	10		 Other	Os10g0390800	LOC_Os10g25170.1		0		GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
8855	BPH25	Bph25(t)	BROWN PLANTHOPPER RESISTANCE 25				6	BPH25 gene conferring resistance to BPH derived from a BPH-resistant indica rice cultivar, Oryza sativa ADR52	 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8856	BPH26	Bph26(t)	BROWN PLANTHOPPER RESISTANCE 26				12	LOC_Os12g37280. BPH26 gene conferring resistance to BPH derived from a BPH-resistant indica rice cultivar, Oryza sativa ADR52. AB910360. a coiled-coil-nucleotide-binding-site-leucine-rich repeat (CC-NBS-LRR) protein. BPH26 was identical to BPH2 on the basis of DNA sequence analysis and feeding ability of the BPH2-virulent biotype of BPH. Two putative genes (Os12g0559400 and Os12g0559600) were predicted to encode parts of one nucleotide-binding site-leucine-rich repeat (NBS-LRR) protein (Tamura et al. 2014).	 Tolerance and resistance - Insect resistance	Os12g0559400	LOC_Os12g37290.1, LOC_Os12g37280.1		0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8857	qAC9.3		amylose content (QTL) 9.3					HokkaiPL9	 Character as QTL - Grain quality				0				
8858	PI46	Pi46(t)	PYRICULARIA ORYZAE RESISTANCE 46	Magnaporthe grisea resistance 46, Blast resistance 46			11	Linkage analysis using susceptible F2 individuals showed that Pi46(t) was mapped between the markers RM224 and RM27360.	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8859	DPL1		DOPPELGANGER 1	DOPPELGANGER1		DPL1-N+, DPL1-K-	1	DPL1 and DPL2 are  paralogous genes. AB534814. Functional DPL1 is essential for pollen gemination in vitro. other DPL1 orthologs AB534814-AB534855.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os01g0258600	LOC_Os01g15448.1		0			TO:0000485 - sterility related trait	PO:0009066 - anther 
8860	DPL2		DOPPELGANGER 2	DOPPELGANGER2		DPL2-N-, DPL2-K+	6	DPL1 and DPL2 are paralogous genes. AB534856. Functional DPL2 is essential for pollen gemination in vitro. other DPL2 orthologs AB534856-AB534897. KF892880-KF892970.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os06g0184100	LOC_Os06g08510.1		0			TO:0000485 - sterility related trait	PO:0009066 - anther 
8861	PI42	Pi42(t), Pi-42(t)	PYRICULARIA ORYZAE RESISTANCE 42 	Pyricularia grisea resistance 42, Magnaporthe grisea resistance 42, Blast resistance 42			12	Original line is DHR9 (Indica). 	 Tolerance and resistance - Disease resistance	Os12g0281600	LOC_Os12g18374.2, LOC_Os12g18374.1		0		GO:0009620 - response to fungus, GO:0043531 - ADP binding, GO:0006952 - defense response		
8862	PIKS	Pi-ks, Pi-s, Pik-s, Piks	PYRICULARIA ORYZAE RESISTANCE KS	Pyricularia oryzae resistance ks, Magnaporthe grisea resistance ks, Blast resistance ks			11	Original lines are the Shin 2, Aichi Asahi and Ishikari Shiroke groups (Japonica). Map position (115.1-117.3 cM). Pi-ks is one of the alleles in the Pi-k locus. 	 Tolerance and resistance - Disease resistance				0				
8863	XA33	Xa33	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 33 	Xanthomonas oryzae pv. oryzae resistance 33, Xanthomonas campestris pv. oryzae resistance-33, Xanthomonas oryzae pv. oryzae resistance-33, Xanthomonas resistance 33			7	XA33 gene was fine mapped on chromosome 7 between two SSR markers RMWR7.1 and RMWR7.6  (Kumar et al. 2011).	 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
8864	BSR1	OsRLCK278, RLCK278	BROAD-SPECTRUM RESISTANCE 1	Receptor-like Cytoplasmic Kinase 278	RECEPTOR-LIKE CYTOPLASMIC KINASE 278		9	BSR1 gene conferred remarkable resistance to both bacterial and fungal pathogens (Xanthomonas oryzae pv. oryzae (Xoo) and Magnaporthe grisea) when overexpressed in rice. LOC_Os09g36320. targeted by osa-miR818 (Qin et al. 2017).	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0533600	LOC_Os09g36320.1		0		GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
8865	LGD1		LAGGING GROWTH AND DEVELOPMENT 1		von Willebrand factor type A (vWA) domain containing protein	LGD1.1	9	multiple transcripts from LGD1. lgd1 mutant showed slow growth and development.	 Vegetative organ	Os09g0502100	LOC_Os09g32540.1		0				
8872	PTB1		POLLEN TUBE BLOCKED 1 		RING-TYPE E3 UBIQUITIN LIGASE	ptb1	5	PTB1 is an important maternal sporophytic factor of pollen tube growth and a key modulator of the rice panicle seed setting rate. LOC_Os05g05280.	 Reproductive organ - Pollination, fertilization, fertility	Os05g0145000	LOC_Os05g05280.1		0				
8873	PI47	Pi47, Pi47(t)	PYRICULARIA ORYZAE RESISTANCE 47 				11	Pi47 was identified in XZ3150 (indica rice cultivar Xiangzi 3150) and is located in the interval between RM206 and RM224 on chromosome 11.	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8874	PI48	Pi48, Pi48(t)	PYRICULARIA ORYZAE RESISTANCE 48 				12	Pi48 was identified in XZ3150 (indica rice cultivar Xiangzi 3150) and is located in the interval between RM5364 and RM7102 on chromosome 12.	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8875	RYMV2	OsCPR5-1, CPR5-1	RESISTANCE TO YELLOW MOTTLE 2	constitutive expresser of pathogenesisrelated genes 5-1			1	confers high resistance (no symptoms, no virus detection in ELISA) to Rice yellow motlle virus. a Rice Homolog of the Arabidopsis thaliana CPR5 Gene. LOC_Os01g68970. KC977156, KC977153, KC977154, KC977151, KC977152, KF303596.	 Tolerance and resistance - Disease resistance	Os01g0918500 	LOC_Os01g68970.3, LOC_Os01g68970.2, LOC_Os01g68970.1		0		GO:0031348 - negative regulation of defense response, GO:0051607 - defense response to virus	TO:0000088 - rice yellow mottle virus resistance	
8877	WFP	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1	WEALTHY FARMER'S PANICLE	IDEAL PLANT ARCHITECTURE 1, Ideal Plant Architecture 1, Ideal Plant Architecture1, Squamosa promoter-binding-like protein 14, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14, Squamosa promoter binding protein like-14, IDEAL PLANT ARCHITECTURE1	SQUAMOSA PROMOTER BINDING  PROTEIN-LIKE 14	ipa1, OsSPL14WFP, OsSPL14ipa, OsSPL14-ST12, OsSPL14-Aikawa1, OsSPL14-Ri22, OsSPL14-Habataki, ipa1-1D, ipa1-2D, ipa1-3D, ipa1-4D, ipa1-10, ipa1-11, Ri22, ipa1-1D	8	A QTL increases primary branch number on chromosome 8. Q7EXZ2. GU136674. Regulate panicle branching and grain yield. LOC_Os08g39890.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os08g0509600	LOC_Os08g39890.1		0		GO:0005634 - nucleus, GO:0009755 - hormone-mediated signaling, GO:0045449 - regulation of transcription, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus, GO:0006350 - transcription, GO:0003677 - DNA binding	TO:0000547 - primary branch number, TO:0000017 - anatomy and morphology related trait, TO:0000396 - grain yield, TO:0002759 - grain number, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000011 - nitrogen sensitivity, TO:0000152 - panicle number, TO:0000455 - seed set percent, TO:0000050 - inflorescence branching, TO:0000447 - filled grain number, TO:0000329 - tillering ability	
8878	XA34	xa34(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 34			xa34	1	The locus of xa34(t) was defined to a 204 kb interval flanked by markers RM10929 and BGID25.	 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8879	XA35		XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 35				11		 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8880	XA36		XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 36				11		 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8881	XA37		"	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 37"						 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8882	G1L1	OsG1L1	G1 LIKE PROTEIN 1		G1 LIKE PROTEIN 1		2	LOC_Os02g07030. AB512490. Q0E3M2. B8AIK3. GO:0090698: post-embryonic plant morphogenesis.	 Other	Os02g0166800	LOC_Os02g07030.3, LOC_Os02g07030.2, LOC_Os02g07030.1		0		GO:0003677 - DNA binding, GO:0009299 - mRNA transcription, GO:0007275 - multicellular organismal development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009416 - response to light stimulus, GO:0005634 - nucleus		PO:0020104 - leaf sheath 
8883	G1L2	OsG1L2	G1 LIKE PROTEIN 2		G1 LIKE PROTEIN 2		6	AB512491. Q652I1. A2YG32. GO:0090698: post-embryonic plant morphogenesis. PO:0030123: panicle inflorescence.	 Other	Os06g0672400	LOC_Os06g46030.1		0		GO:0003677 - DNA binding, GO:0009299 - mRNA transcription, GO:0007275 - multicellular organismal development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009416 - response to light stimulus, GO:0005634 - nucleus		PO:0009047 - stem , PO:0009005 - root , PO:0005052 - plant callus , PO:0020104 - leaf sheath 
8884	G1L3	OsG1L3	G1 LIKE PROTEIN 3		G1 LIKE PROTEIN 3		2	AB512492. Q0DZF3. B8AH02. GO:0090698: post-embryonic plant morphogenesis.	 Other	Os02g0623400	LOC_Os02g41460.1		0		GO:0009416 - response to light stimulus, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription		PO:0020104 - leaf sheath 
8885	G1L4	OsG1L4	G1 LIKE PROTEIN 4		G1 LIKE PROTEIN 4		4	AB512493. Q7XRS1. A2XVI8. GO:0090698: post-embryonic plant morphogenesis.	 Other	Os04g0516200	LOC_Os04g43580.2, LOC_Os04g43580.1		0		GO:0009416 - response to light stimulus, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription		PO:0009047 - stem , PO:0009006 - shoot system 
8886	G1L5	OsG1L5, TAW1, OsTAW1	G1 LIKE PROTEIN 5	TAWAWA1	G1 LIKE PROTEIN 5	tawawa1-D, taw1-D1, taw1-D2	10	AB512494. Q7XDD0. GO:0090698: post-embryonic plant morphogenesis.	 Reproductive organ - Inflorescence,  Reproductive organ - Panicle, Mode of branching,  Other	Os10g0478000	LOC_Os10g33780.1		0		GO:0009416 - response to light stimulus, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription		PO:0009005 - root , PO:0005052 - plant callus 
8887	BLS1	OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1	BEAK LIKE SPIKELET 1	G1 LIKE PROTEIN 6, TRIANGULAR HULL1, TRIANGULAR HULL 1, BEAK LIKE SPIKELET1, abnormal ower and dwarf1, beak-shaped grain1, BEAK-SHAPED GRAIN 1, ABNORMAL FLOWER AND DWARF 1	G1 LIKE PROTEIN 6	th1, th1-1, bls1, bls1-1, bls1-2, s2-89, xd151, xd281, xd425, bsg1, bsg1-1, afd1	2	AB512495. Q6K5X1. A2XAV5. TO:1000024: palea morphology trait. GO:0090698: post-embryonic plant morphogenesis. GO:0045892: negative regulation of transcription, DNA-templated. PO:0030123: panicle inflorescence. TO:1000024: palea morphology trait.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os02g0811000	LOC_Os02g56610.1		0		GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0001558 - regulation of cell growth, GO:0008361 - regulation of cell size, GO:0009299 - mRNA transcription, GO:0009416 - response to light stimulus, GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0048437 - floral organ development, GO:0051302 - regulation of cell division	TO:0000421 - pollen fertility, TO:0000145 - internode length, TO:0006011 - lodicule shape, TO:0002762 - width of grain with hull, TO:0000614 - lemma shape, TO:0000657 - spikelet anatomy and morphology trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0000564 - spikelet width, TO:0002730 - grain shape, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000040 - panicle length, TO:0000180 - spikelet fertility	PO:0001047 - lemma development stage , PO:0001048 - palea development stage , PO:0020104 - leaf sheath , PO:0020032 - plumule , PO:0025585 - floral organ formation stage , PO:0009049 - inflorescence , PO:0009037 - lemma , PO:0009038 - palea , PO:0001083 - inflorescence development stage 
8888	G1L7	OsG1L7	G1 LIKE PROTEIN 7		G1 LIKE PROTEIN 7		1	AB512496. Q941W1. A2XED8. GO:0090698: post-embryonic plant morphogenesis.	 Other	Os01g0828900	LOC_Os01g61310.1		0		GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription, GO:0009416 - response to light stimulus		PO:0009047 - stem , PO:0020104 - leaf sheath 
8889	G1L8	OsG1L8	G1 LIKE PROTEIN 8		G1 LIKE PROTEIN 8		5	AB512497. Q6ATW6. A2Y5N0. GO:0090698: post-embryonic plant morphogenesis.	 Other	Os05g0472000	LOC_Os05g39500.1		0		GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription, GO:0009416 - response to light stimulus		PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0009005 - root 
8890	G1L9	OsG1L9	G1 LIKE PROTEIN 9		G1 LIKE PROTEIN 9		5	AB512498. Q5W659. A2Y3I2. GO:0090698: post-embryonic plant morphogenesis.	 Other	Os05g0347400	LOC_Os05g28040.1		0		GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription, GO:0009416 - response to light stimulus		PO:0009005 - root 
8891	XA38	Xa38	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 38	Xanthomonas oryzae pv. oryzae resistance 38			4	Dominant gene effective against all the prevalent virulences in North India. Oryza nivara PR114(Xa38). This gene was originally named as Xa30 and renamed as Xa38. Approximately 35 cM chromosomal region on 4L, between RM317 and RM562, to be associated with BB resistance.Based on the map position of Xa38, three loci LOC_Os04g53030, LOC_Os04g53050 and LOC_Os04g53060 were considered as putative candidate genes.	 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8892	DRO1	Dro1	DEEPER ROOTING 1	Deeper rooting 1		DRO1-kp	9	Deeper rooting (large root growth angle).Position:16679.5-17287.9kbp(IRGSP4). AB689742, AB689741. LOC_Os09g26840.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Root activity	Os09g0439800	LOC_Os09g26840.1		0		GO:0009414 - response to water deprivation, GO:0048364 - root development	TO:0000656 - root development trait, TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance	PO:0007520 - root development stage 
8893	STA1	Sta1	STELE TRANSVERSAL AREA 1				9		 Character as QTL - Root activity				0				
8894	qFLL9	qFLL9	FLAG LEAF LENGTH 9				9	Lijiangxintuanheigu(LTD). qFLL9 was mapped between SSR marker RM24423 and RM24434.	 Vegetative organ - Leaf,  Character as QTL - Plant growth activity				0				
8895	LSY1	lsy1	LEAF LATERAL SYMMETRY 1	leaf lateral symmetry-1				lsy1 mutant showed two major phenotypes of leaves; a narrow leaf due to the deletion of a part or whole of one lateral half, and a bifurcated leaf in which an additional midrib is formed in one lateral half. Homozygous lys1 plants were sterile. PO:0009062; gynoecium ; PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0061479	0		GO:0000079 - regulation of cyclin-dependent protein kinase activity	TO:0000492 - leaf shape, TO:0000358 - female sterility	PO:0009025 - vascular leaf , PO:0009062 - gynoecium 
8896	MEL2	OsMEL2	MEIOSIS ARRESTED AT LEPTOTENE 2	MEIOSIS ARRESTED AT LEPTOTENE2	PROTEIN AGRONAUTE MEL2	mel2-1, mel2-2	12	MEL2 protein plays an essential role in promoting premeiotic G1/S-phase transition in rice, Tos17 insertion line ND00287(mel2-1), NE04525(mel2-2), AB522964, RNA recognition motif(RRM) protein	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0572800	LOC_Os12g38460.1		0		GO:0003723 - RNA binding		
8897	PI45		reserved gene										0				
8898	VR1		VACUOLATION RETARDATION 1				4	VR1 is located between the molecular markers RM17411 and RM5030, at the distances of 0.7 and 1.5cM, respectively, on chromosome 4. 	 Reproductive organ - Pollination, fertilization, fertility				0				
8899	PI46	Pi46(t)	PYRICULARIA ORYZAE RESISTANCE 46 	Magnaporthe grisea resistance 46, Blast resistance 46			4	Pi46(t) was mapped between two SSR markers, RM6748 and RM5473, on the terminal region of the long arm of chromosome 4. Original line is Chumroo.	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8900	GW2	OsGW2	GRAIN WEIGHT 2	GRAIN WIDTH AND WEIGHT2, Grain width 2	RING-TYPE E3 UBIQUITIN LIGASE	GW2-A, GW2-B, gw2, gw2-1, gw2-2	2	LOC_Os02g14720. EF447275. a homolog of Arabidopsis E3 ubiquitin ligase DA2. KC609022-KC609034 (O. sativa and wild rice species, partial ads). PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os02g0244100	LOC_Os02g14720.2, LOC_Os02g14720.1		0		GO:0006109 - regulation of carbohydrate metabolic process, GO:0080050 - regulation of seed development, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity	TO:0000396 - grain yield, TO:0000391 - seed size, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000402 - grain width	PO:0009005 - root , PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0009066 - anther , PO:0005360 - aleurone layer 
8901	GBSSII	GBSS2	GRANULE BOUND STARCH SYNTHASE II	Granule-bound starch synthase Ib, Granule-bound starch synthase II	GRANULE BOUND STARCH SYNTHASE II		7	AY069940. FJ811002-FJ811042 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901890-DQ901918 (wild rice species). EF069642-EF069713 (O.sativa and wild rice species). GQ150865.	 Biochemical character,  Seed - Physiological traits - Storage substances	Os07g0412100	LOC_Os07g22930.4, LOC_Os07g22930.3, LOC_Os07g22930.2		0		GO:0009011 - starch synthase activity, GO:0019252 - starch biosynthetic process, GO:0005982 - starch metabolic process, GO:0004373 - glycogen (starch) synthase activity		
8903	CRL3	crl3	CROWN ROOTLESS 3				3	CRL3 locus was located between the molecular marker I03_F (94.9cM) and K08_20, which are covered by two BAC clones; AC091246 and AC092390.	 Vegetative organ - Root				0				
8904	CRL4	OsGNOM1, GNOM1, CRL4/GNOM1	CROWN ROOTLESS 4	crown rootless4		crl4, gnom1-1, gnom1-2, gnom1-3, gnom1-4	3	a guanine nucleotide exchange factor for ADP ribosylation factor. OsGNOM1 was mapped to the long arm of chromosome 3 between the single sequence repeat (SSR) marker RM15621 and a sequence-tagged site (STS) marker STS18. EAY91294. LOC_Os03g46330.	 Vegetative organ - Root	Os03g0666100	LOC_Os03g46330.1		0		GO:0080119 - ER body organization, GO:0032012 - regulation of ARF protein signal transduction, GO:0016192 - vesicle-mediated transport, GO:0010540 - basipetal auxin transport, GO:0000911 - cytokinesis by cell plate formation, GO:0010292 - GTP:GDP antiporter activity, GO:0010087 - phloem or xylem histogenesis, GO:0009942 - longitudinal axis specification, GO:0009826 - unidimensional cell growth, GO:0007155 - cell adhesion, GO:0005086 - ARF guanyl-nucleotide exchange factor activity, GO:0001736 - establishment of planar polarity, GO:0005802 - trans-Golgi network, GO:0048765 - root hair cell differentiation		
8905	PUL	OsPUL, SDBE, OsPUL3, RE	PULLULANASE	R-enzyme, starch debranching enzyme	PULLULANASE		4	D50602, AB012915. FJ918761-FJ918822 (wild rice species). OsPUL3 (LOC_Os04g08270) in Lu et al. 2012.	 Biochemical character	Os04g0164900		GR:0061189	0		GO:0051060 - pullulanase activity, GO:0005975 - carbohydrate metabolic process, GO:0004556 - alpha-amylase activity		
8906	RSR1	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1	RICE STRACH REGULATOR 1	AP2/EREBP family transcription factor, APETALA2/ethylene-responsive element binding protein 90, Rice Starch Regulator1, APETALA2-1	RICE STRACH REGULATOR 1	rsr1	5	AY685117, LOC_Os05g03040. rsr1 mutants have a larger seed size and increased seed mass and yield. RSR1 overexpression suppresses the expression of starch systhesis genes. qHD5 in Zhan et al. 2015 and Sun et al. 2016. qHD5 is a major and novel QTL for HD which was pleiotropic and was limited to a 309.52 Kb region (between RM17788-RM5374 oc chromosome 5) (Zhan et al. 2015). This gene (LOC_Os05g03040) was concluded to be the most probable candidate gene for qHD5 (Sun et al. 2016). AP2-1 in Dai et al. 2016. 	 Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os05g0121600	LOC_Os05g03040.3, LOC_Os05g03040.2, LOC_Os05g03040.1		0		GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0009887 - organ morphogenesis, GO:0010077 - maintenance of inflorescence meristem identity, GO:0010228 - vegetative to reproductive phase transition, GO:0010581 - regulation of starch biosynthetic process, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0048437 - floral organ development	TO:0000259 - heat tolerance, TO:0006032 - panicle size, TO:0006030 - spikelet meristem identity, TO:0000137 - days to heading, TO:0000382 - 1000-seed weight, TO:0000397 - grain size	
8907	ACT2	OsACT2, Act2	ACTIN 2		ACTIN 2		3	EU155408	 Biochemical character				0		GO:0003774 - motor activity, GO:0015629 - actin cytoskeleton, GO:0005856 - cytoskeleton, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0005515 - protein binding		
8908	BGLU13	OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13	BETA-GLUCOSIDASE 13	beta-glucosidase 13, tuberonic acid glucoside beta-glucosidase 1, tuberonic acid glucoside hydrolyzing beta-glucosidase 1	BETA-GLUCOSIDASE 13		4	Glycosyl hydrolase family 1 (GH1). BAF14985. Q7XKV2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0474900	LOC_Os04g39900.1		0		GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
8909	PTR1	OsPTR1, OsNPF8.2, NPF8.2	PROTEIN TRANSPORTER 1	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.2	PROTEIN TRANSPORTER 1		7	LOC_Os07g01070.	 Biochemical character	Os07g0100600	LOC_Os07g01070.1		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0006857 - oligopeptide transport		
8910	PTR2	OsPTR2, OsNPF2.2, NPF2.2	PROTEIN TRANSPORTER 2	nitrate transporter 1/peptide transporter family 2.2, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 2.2	PROTEIN TRANSPORTER 2	osnpf2.2, osnpf2.2-1, osnpf2.2-2	12	LOC_Os12g44100. TO:0020094: nitrate content. TO:0020098: nitrate sensitivity. TO:0020099: nitrate transport.	 Biochemical character	Os12g0638200	LOC_Os12g44100.1		0		GO:0016020 - membrane, GO:0001944 - vasculature development, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0010167 - response to nitrate, GO:0015706 - nitrate transport, GO:0044464 - cell part		PO:0000034 - vascular system 
8911	PTR3	OsPTR3, OsNPF5.5, NPF5.5	PROTEIN TRANSPORTER 3	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 5.5	PROTEIN TRANSPORTER 3		10	LOC_Os10g33210.	 Biochemical character	Os10g0470700	LOC_Os10g33210.1		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
8912	PTR4	OsPTR4, OsNPF7.1, NPF7.1	PROTEIN TRANSPORTER 4	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.1	PROTEIN TRANSPORTER 4		7	LOC_Os07g41250.	 Biochemical character	Os07g0603800	LOC_Os07g41250.2, LOC_Os07g41250.1		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
8913	PTR5	OsPTR5, OsNPF7.4, NPF7.4	PROTEIN TRANSPORTER 5	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.4	PROTEIN TRANSPORTER 5		4	LOC_Os04g50940.	 Biochemical character	Os04g0597600	LOC_Os04g50940.2, LOC_Os04g50940.1		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
8914	PTR6	OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3	PROTEIN TRANSPORTER 6	PTR/NRT1 transporter 6, nitrate transporter 1/peptide transporter family 7.3, PTR/NRT1 family 7.3, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.3	PROTEIN TRANSPORTER 6		4	LOC_Os04g50950. AY305030. TO:0020093: nitrogen content.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0597800	LOC_Os04g50950.1		0		GO:0015197 - peptide transporter activity, GO:0045848 - positive regulation of nitrogen utilization, GO:0044270 - nitrogen compound catabolic process, GO:0016020 - membrane, GO:0005774 - vacuolar membrane, GO:0005215 - transporter activity	TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0000152 - panicle number, TO:0000346 - tiller number, TO:0002673 - amino acid content	PO:0020121 - lateral root , PO:0009047 - stem 
8915	PTR7	OsPTR7, OsNPF8.1, NPF8.1	PROTEIN TRANSPORTER 7	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.1	PROTEIN TRANSPORTER 7	osptr7-1, osptr7-2	1	LOC_Os01g04950.1 TO:1000052: shoot system arsenic content.	 Biochemical character	Os01g0142800	LOC_Os01g04950.1, LOC_Os01g04950.2, LOC_Os01g04950.3, LOC_Os01g04950.4		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0006857 - oligopeptide transport		PO:0020141 - stem node , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009006 - shoot system 
8916	PTR8	OsPTR8, OsNPF8.5, NPF8.5	PROTEIN TRANSPORTER 8	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.5	PROTEIN TRANSPORTER 8		3	LOC_Os03g51050.	 Biochemical character	Os03g0719900	LOC_Os03g51050.1		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0006857 - oligopeptide transport		
8917	ABI3		ABA INSENSITIVE 3		BZIP-TYPE TRANSCRIPTION FACTOR ABI3				 Reproductive organ - Pollination, fertilization, fertility				0				
8918	PPS	OsWD40-55, OsCOP1, COP1	PETER PAN SYNDROME	COP1 ortholog, CONSTITUTIVE PHOTOMORPHOGENIC 1		pps-1, pps-2	2	Rice pps is a heterochronic mutant that shows a prolonged juvenile phase. In addition, pps shows early flowering. Germplasm: Taichung 65. LOC_Os02g53140. AB040053. TO:0000748: leaf anatomy and morphology trait. AF261992, AF289544. OsRFP (RING finger protein). lodging resistance. TO:0000756: stem internode anatomy and morphology trait.	 Reproductive organ - Heading date,  Heterochrony,  Tolerance and resistance - Stress tolerance	Os02g0771100	LOC_Os02g53140.1		0		GO:0006281 - DNA repair, GO:0048573 - photoperiodism, flowering, GO:0010119 - regulation of stomatal movement, GO:0009640 - photomorphogenesis, GO:0008270 - zinc ion binding, GO:0009628 - response to abiotic stimulus, GO:0010228 - vegetative to reproductive phase transition, GO:0046283 - anthocyanin metabolic process, GO:0046685 - response to arsenic, GO:0009641 - shade avoidance, GO:0016874 - ligase activity, GO:0005634 - nucleus	TO:0000396 - grain yield, TO:0000675 - ferulic acid content, TO:0002616 - flowering time, TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading, TO:0000168 - abiotic stress trait, TO:0000326 - leaf color, TO:0000051 - stem strength, TO:0006007 - polysaccharide content, TO:0006006 - monosaccharide content	
8919	APO	apo	APOMIXIS	apomixis			12					GR:0061076	0				
8920	ATG4	Atg4, OsAtg4, APG4, Atg4b, OsATG4b	AUTOPHAGY ASSOCIATED GENE 4	autophagy 4, AUTOPHAGY RELATED4b, autophagy 4b, AUTOPHAGY ASSOCIATED GENE 4B			4	Q7XPW8, Q2XPP4, DQ269984, ABB77259. PO:0020104; leaf sheath ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. LOC_Os04g58560. Atg4b in Chung et al. 2009.	 Biochemical character	Os04g0682000	LOC_Os04g58560.2, LOC_Os04g58560.1	GR:0101172	0		GO:0016807 - cysteine-type carboxypeptidase activity, GO:0005737 - cytoplasm, GO:0005775 - vacuolar lumen, GO:0019786 - APG8-specific protease activity, GO:0006914 - autophagy, GO:0005776 - autophagic vacuole, GO:0005515 - protein binding		PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
8922	CCH	OsATX1, CCH, ATX1	COPPER CHAPERONE HOMOLOG	Anti-oxidant 1, copper chaperone homolog CCH	COPPER CHAPERONE HOMOLOG		2	LOC_Os02g32814. AF198626. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os02g0530100	LOC_Os02g32814.1	GR:0101323	0		GO:0046872 - metal ion binding, GO:0009566 - fertilization, GO:0005507 - copper ion binding, GO:0030001 - metal ion transport, GO:0046688 - response to copper ion, GO:0006826 - iron ion transport	TO:0000021 - copper sensitivity	
8923	EP3	EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3	ERECT PANICLE 3	LARGER PANICLE, F-box protein 76	ep3, lp		2	LOC_Os02g15950. TO:0000847: panicle anatomy and morphology trait. a Kelch repeat-containing F boxprotein. Os_F0106 in Hua et al. 2011.  EP3 is a functional orthologue of Arabidopsis HWS gene (Yu et al. 2015).	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os02g0260200	LOC_Os02g15950.1		0		GO:0048513 - organ development, GO:0010118 - stomatal movement, GO:0010052 - guard cell differentiation, GO:0009760 - C4 photosynthesis	TO:0000050 - inflorescence branching, TO:0002759 - grain number, TO:0000396 - grain yield	
8924	EP2(t)	Ep2(t)	ERECT PANICLE 2				4	The target trais was mapped between RM5879 and RM3332.	 Reproductive organ - Panicle, Mode of branching				0				
8925	ETR2	etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3	ETHYLENE RESPONSE 2	subfamily I ethylene receptor, ethylene receptor 2	PROTEIN KINASE		4	No ETR1-like receptor (subfamily I receptor with a receiver domain) was identified after analysis of the whole rice genome.  AB107219, AF420319, Q944U0, AY136816. LOC_Os04g08740.	 Biochemical character,  Seed - Physiological traits - Storage substances	Os04g0169100	LOC_Os04g08740.3, LOC_Os04g08740.2, LOC_Os04g08740.1		0		GO:0009413 - response to flooding, GO:0005789 - endoplasmic reticulum membrane, GO:0000155 - two-component sensor activity, GO:0000156 - two-component response regulator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009873 - ethylene mediated signaling pathway, GO:0018106 - peptidyl-histidine phosphorylation, GO:0048573 - photoperiodism, flowering, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005524 - ATP binding, GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity, TO:0002616 - flowering time, TO:0000696 - starch content, TO:0000286 - submergence sensitivity, TO:0000382 - 1000-seed weight, TO:0000137 - days to heading, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity	
8926	BC7	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17	BRITTLE CULM 7	Cellulose synthase A catalytic subunit 4 [UDP-forming], Cellulose synthase A catalytic subunit 4, brittle culm 7, brittle culm11, fragile culm 17	CELLULOSE SYNTHASE A4	bc7, bc11, oscesa, cesa4, fc17	1	EC=2.4.1.12 A2WV32(indica). Q5JN63(japonca). LOC_Os01g54620. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association. GO:1901698: response to nitrogen compound.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os01g0750300	LOC_Os01g54620.1		0		GO:0005515 - protein binding, GO:0009610 - response to symbiotic fungus, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0005886 - plasma membrane, GO:0007047 - cell wall organization, GO:0008270 - zinc ion binding, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0009834 - secondary cell wall biogenesis, GO:0009642 - response to light intensity	TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0000460 - light intensity sensitivity	PO:0025025 - root system 
8927	BRXL1	OsBRXL1	BREVIS RADIX-LIKE 1	Brevis radix-like 1, BRX-like 1	BREVIS RADIX-LIKE 1		8	Q6YUB8. Although different locus number(OsBRXL4) is used in the reference 2010, the original number is given the highest priority in the database.	 Tolerance and resistance - Stress tolerance	Os08g0462700	LOC_Os08g36020.1		0		GO:0005634 - nucleus		
8928	BRXL2	OsBRXL2	BREVIS RADIX-LIKE 2	Brevis radix-like 2, BRX-like 2	BREVIS RADIX-LIKE 2		2	Q6ZIK7. Although different locus number(OsBRXL1) is used in the reference 2010, the original number is given the highest priority in the database.	 Tolerance and resistance - Stress tolerance	Os02g0700700	LOC_Os02g47230.2, LOC_Os02g47230.1		0		GO:0005634 - nucleus		
8929	BRXL3	OsBRXL3	BREVIS RADIX-LIKE 3	Brevis radix-like 3, BRX-like 3	BREVIS RADIX-LIKE 3		4	Q7XPT0.	 Tolerance and resistance - Stress tolerance	Os04g0600500	LOC_Os04g51172.1		0		GO:0005634 - nucleus		
8930	BRXL4	OsBRXL4	BREVIS RADIX-LIKE 4	Brevis radix-like 4, BRX-like 4	BREVIS RADIX-LIKE 4		3	Q84T65. Although different locus number(OsBRXL2) is used in the reference 2010, the original number is given the highest priority in the database.	 Tolerance and resistance - Stress tolerance	Os03g0853500	LOC_Os03g63650.1		0		GO:0005634 - nucleus		
8931	BRXL5.P	OsBRXL5.P, OsBRXL5	BREVIS RADIX-LIKE 5 PSEUDOGENE	Brevis radix-like 5 pseudogene, BRX-like 5 pseudogene			12	Q2QWK1. Although different locus number(OsBRXL6) is used in the reference 2010, the original number is given the highest priority in the database. LOC_Os12g09080.	 Tolerance and resistance - Stress tolerance	Os12g0193000	LOC_Os12g09080.1		0		GO:0005634 - nucleus		
8932	BRXL5	OsBRXL5	BREVIS RADIX-LIKE 5	Brevis radix-like 5	BREVIS RADIX-LIKE 5		9	OsBRXL5 should be the combination of the two predicted molecules (LOC_Os09g27220 + LOC_Os09g27220).	 Tolerance and resistance - Stress tolerance	Os09g0444500	LOC_Os09g27220.1		0		GO:0005634 - nucleus		
8933	LRA1	OsPIN2, PIN2, OsLRA1	LARGE ROOT ANGLE1	PIN-FORMED 2, large root angle 1	PIN PROTEIN 2	lra1	6	LOC_Os06g44970. BR000831, AP005769, Q651V6, auxin efflux carrier. gi:52077371. GO:1901698: response to nitrogen compound. GO:2000012: regulation of auxin polar transport.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os06g0660200	LOC_Os06g44970.1		0		GO:0009725 - response to hormone stimulus, GO:0009926 - auxin polar transport, GO:0016021 - integral to membrane, GO:0009629 - response to gravity, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0055085 - transmembrane transport	TO:0000346 - tiller number, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000567 - tiller angle, TO:0000401 - plant growth hormone sensitivity, TO:0000043 - root anatomy and morphology trait, TO:0002693 - gravity response trait, TO:0000011 - nitrogen sensitivity, TO:0000152 - panicle number	PO:0004013 - epidermal cell , PO:0009005 - root , PO:0008039 - stem base , PO:0000016 - lateral root primordium , PO:0025256 - lateral root elongation zone 
8934	PIN10A	PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3	PIN PROTEIN 10A	PIN PROTEIN 3A	PIN PROTEIN 10A		1	BR000832, AP003725, Q5VP70, auxin efflux carrier. gi:55297110. OsPIN3a in Zou et al. 2014 and Akiba et al. 2014. OsPIN3 in Deshpande et al. 2015.	 Biochemical character	Os01g0643300	LOC_Os01g45550.3, LOC_Os01g45550.2, LOC_Os01g45550.1		0		GO:0009734 - auxin mediated signaling pathway, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	PO:0004013 - epidermal cell 
8935	PIN10B	PIN3B, OsPIN3b, OsPIN10b	PIN PROTEIN 10B	PIN PROTEIN 3B	PIN PROTEIN 10B		5	BR000833, AC098571, Q6L5F6, auxin efflux carrier. OsPIN3b in Zou et al. 2014.	 Biochemical character	Os05g0576900	LOC_Os05g50140.2, LOC_Os05g50140.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009734 - auxin mediated signaling pathway		
8936	PIN5A	OsPIN5a	PIN PROTEIN 5A		PIN PROTEIN 5A		1	BR000834, AP003437, Q651V6.	 Biochemical character	Os01g0919800	LOC_Os01g69070.1		0		GO:0009734 - auxin mediated signaling pathway, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8937	GRP1	OsGRP1	GLYCINE-RICH RNA-BINDING PROTEIN 1	glycine-rich RNA-binding protein 1	GLYCINE-RICH RNA-BINDING PROTEIN 1		1		 Tolerance and resistance - Stress tolerance	Os01g0916600	LOC_Os01g68790.4, LOC_Os01g68790.3, LOC_Os01g68790.2, LOC_Os01g68790.1		0		GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
8938	GRP2	OsGRP2	GLYCINE-RICH RNA-BINDING PROTEIN 2	glycine-rich RNA-binding protein 2	GLYCINE-RICH RNA-BINDING PROTEIN 2		3		 Tolerance and resistance - Stress tolerance	Os03g0770100	LOC_Os03g56020.1		0		GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
8939	GRP3	OsGRP3, RTP, RBP-152	GLYCINE-RICH RNA-BINDING PROTEIN 3	glycine-rich RNA-binding protein 3, ABA-inducible for glycine-rich protein, Retrotransposon protein, RNA-binding RBP-152	GLYCINE-RICH RNA-BINDING PROTEIN 3		3	LOC_Os03g46770. D10424 (partial cds). D15344, D16070, D22624. D29707. BF889450. embryonic abundant protein, glycine-rich. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0670700	LOC_Os03g46770.1		0		GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
8940	GRP4	OsGRP4	GLYCINE-RICH RNA-BINDING PROTEIN 4	glycine-rich RNA-binding protein 4	GLYCINE-RICH RNA-BINDING PROTEIN 4		4		 Tolerance and resistance - Stress tolerance	Os04g0414400	LOC_Os04g33810.1		0		GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
8941	GRP5	OsGRP5	GLYCINE-RICH RNA-BINDING PROTEIN 5	glycine-rich RNA-binding protein 5	GLYCINE-RICH RNA-BINDING PROTEIN 5		5		 Tolerance and resistance - Stress tolerance	Os05g0223300	LOC_Os05g13630.1		0		GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
8942	GRP6	OsGRP6, GRRBP7	GLYCINE-RICH RNA-BINDING PROTEIN 6	glycine-rich RNA-binding protein 6, glycine-rich RNA-binding protein 7	GLYCINE-RICH RNA-BINDING PROTEIN 6		12	D22825.	 Tolerance and resistance - Stress tolerance	Os12g0502200	LOC_Os12g31800.1		0		GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
8943	CLPB-C	ClpB-c, OsClpB-c	CLASS I CLP ATPASE B-C	class I Clp ATPase B-C, ClpB-chloroplastic, ClpB/Hsp100 chloroplastic isoform	CLASS I CLP ATPASE B-C		3		 Tolerance and resistance - Stress tolerance	Os03g0426900	LOC_Os03g31300.1		0		GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0017111 - nucleoside-triphosphatase activity, GO:0019538 - protein metabolic process, GO:0005515 - protein binding		
8945	CLPB-M	ClpB-m, OsClpB-m	CLASS I CLP ATPASE B-M	class I Clp ATPase B-M, ClpB-mitochondrial, ClpB/Hsp100 mitochondrial isoform	CLASS I CLP ATPASE B-M		2		 Biochemical character	Os02g0181900	LOC_Os02g08490.1		0		GO:0005524 - ATP binding, GO:0017111 - nucleoside-triphosphatase activity		
8946	CLPC1	ClpC1	CLASS I CLP ATPASE C1	class I Clp ATPase C1	CLASS I CLP ATPASE C1		4		 Biochemical character	Os04g0397100	LOC_Os04g32560.2, LOC_Os04g32560.1		0		GO:0005524 - ATP binding, GO:0006289 - nucleotide-excision repair, GO:0017111 - nucleoside-triphosphatase activity, GO:0004518 - nuclease activity, GO:0003677 - DNA binding		
8947	CLPC2	ClpC2	CLASS I CLP ATPASE C2	class I Clp ATPase C2	CLASS I CLP ATPASE C2		12		 Biochemical character	Os12g0226900	LOC_Os12g12580.2, LOC_Os12g12580.1		0		GO:0016491 - oxidoreductase activity, GO:0055114 - oxidation reduction, GO:0008270 - zinc ion binding		
8948	CLPC3	ClpC3	CLASS I CLP ATPASE C3	class I Clp ATPase C3	CLASS I CLP ATPASE C3		11		 Biochemical character	Os11g0267400	LOC_Os11g16590.1		0		GO:0008233 - peptidase activity, GO:0005524 - ATP binding, GO:0006289 - nucleotide-excision repair, GO:0004518 - nuclease activity, GO:0019538 - protein metabolic process, GO:0003677 - DNA binding, GO:0017111 - nucleoside-triphosphatase activity, GO:0005515 - protein binding		
8949	CLPC4	ClpC4	CLASS I CLP ATPASE C4	class I Clp ATPase C4	CLASS I CLP ATPASE C4		11		 Biochemical character	Os11g0269000	LOC_Os11g16770.1		0				
8950	ERD1	CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4	EARLY RESPONSIVE TO DEHYDRATION 1	class I Clp ATPase D1, early responsive to drought 1	CLASS I CLP ATPASE D1		2	Q6H795. Caseinolytic protease regulatory subunit. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0526400	LOC_Os02g32520.2, LOC_Os02g32520.1		0		GO:0009751 - response to salicylic acid stimulus, GO:0005515 - protein binding, GO:0005524 - ATP binding, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006562 - proline catabolic process, GO:0005983 - starch catabolic process, GO:0008233 - peptidase activity, GO:0009941 - chloroplast envelope, GO:0017111 - nucleoside-triphosphatase activity, GO:0019538 - protein metabolic process, GO:0034605 - cellular response to heat	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0006002 - proline content, TO:0000696 - starch content	
8951	CLPD2	ClpD2, OsClpD2	CLASS I CLP ATPASE D2	class I Clp ATPase D2	CLASS I CLP ATPASE D2		4	LOC_Os04g33210.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0405000	LOC_Os04g33210.1		0		GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance	
8952	NAC122	OsNAC10, NAC10, ONAC122, NAC122	NAC DOMAIN-CONTAINING PROTEIN 122	NAC domain-containing protein 10, NAC domain-containing protein 122	NAC DOMAIN-CONTAINING PROTEIN 122		11	LOC_Os11g03300. JA-responsive SNAC (stress-responsive NAC) factor. OsNAC10 in Jeong et al. 2010 and Wang et al. 2017. 	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0126900	LOC_Os11g03300.2, LOC_Os11g03300.1		0		GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0051607 - defense response to virus, GO:0009635 - response to herbicide, GO:0009751 - response to salicylic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000058 - herbicide sensitivity	
8953	APX3	OsAPx3, OsAPx03, OSAPX3, APx3, mAPX	ASCORBATE PEROXIDASE 3	ascorbate peroxidase 3, Peroxisomal Ascorbate Peroxidase, microbody-bound ascorbate peroxidase	ASCORBATE PEROXIDASE 3		4	AY382617. AAQ88105. Q01MI9. Q0JEQ2. LOC_Os04g14680.	 Biochemical character	Os04g0223300	LOC_Os04g14680.1		0		GO:0016021 - integral to membrane, GO:0016688 - L-ascorbate peroxidase activity, GO:0020037 - heme binding, GO:0042744 - hydrogen peroxide catabolic process, GO:0055114 - oxidation reduction		
8954	APX4	OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4	ASCORBATE PEROXIDASE 4	ascorbate peroxidase 4, Peroxisomal APX 4	ASCORBATE PEROXIDASE 4		8	Q6ZJJ1. C29046. Peroxisomal Ascorbate Peroxidase.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0549100	LOC_Os08g43560.3, LOC_Os08g43560.2, LOC_Os08g43560.1		0		GO:0006979 - response to oxidative stress, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0042744 - hydrogen peroxide catabolic process, GO:0055114 - oxidation reduction, GO:0016688 - L-ascorbate peroxidase activity, GO:0042742 - defense response to bacterium	TO:0002657 - oxidative stress, TO:0000316 - photosynthetic ability, TO:0000319 - rubisco content, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance	
8955	APX5	OsAPx5, OsAPx05, OSAPX5, APx5	ASCORBATE PEROXIDASE 5	ascorbate peroxidase 5	ASCORBATE PEROXIDASE 5		12	P0C0L0. AU030079. ABA96618. Stromal Ascorbate Peroxidase. chloroplastic isoform.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0178200	LOC_Os12g07830.1		0		GO:0042744 - hydrogen peroxide catabolic process, GO:0009570 - chloroplast stroma, GO:0020037 - heme binding, GO:0055114 - oxidation reduction, GO:0016688 - L-ascorbate peroxidase activity		
8956	APX6	OsAPx6, OsAPx06, OSAPX6, APx6	ASCORBATE PEROXIDASE 6	ascorbate peroxidase 6	ASCORBATE PEROXIDASE 6		12	LOC_Os12g07820. P0C0L1. AU173022. ABA96617. Stromal Ascorbate Peroxidase. chloroplastic isoform.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0178100	LOC_Os12g07820.1		0		GO:0055114 - oxidation reduction, GO:0042744 - hydrogen peroxide catabolic process, GO:0016688 - L-ascorbate peroxidase activity, GO:0042742 - defense response to bacterium, GO:0020037 - heme binding, GO:0009570 - chloroplast stroma	TO:0000175 - bacterial blight disease resistance	
8957	APX7	OsAPx7, OsAPx07, OSAPX7, APx7, sAPX	ASCORBATE PEROXIDASE 7	ascorbate peroxidase 7, stromal Ascorbate Peroxidase	ASCORBATE PEROXIDASE 7		4	AB1148551. AI978435. BAC79362. Q7XJ02. D23646. Cytochrome c peroxidase in Sasaki et al. 1994. chloroplastic isoform.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0434800	LOC_Os04g35520.4, LOC_Os04g35520.3, LOC_Os04g35520.2, LOC_Os04g35520.1		0		GO:0020037 - heme binding, GO:0042744 - hydrogen peroxide catabolic process, GO:0055114 - oxidation reduction, GO:0042742 - defense response to bacterium, GO:0016688 - L-ascorbate peroxidase activity, GO:0006801 - superoxide metabolic process, GO:0009651 - response to salt stress, GO:0009570 - chloroplast stroma	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
8958	APX8	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8	ASCORBATE PEROXIDASE 8	ascorbate peroxidase 8	ASCORBATE PEROXIDASE 8		2	BAC79363. Q69SV0. AB114856. LOC_Os02g34810. Thylakoid-bound Ascorbate Peroxidase.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0553200	LOC_Os02g34810.1		0		GO:0055114 - oxidation reduction, GO:0016688 - L-ascorbate peroxidase activity, GO:0042744 - hydrogen peroxide catabolic process, GO:0009651 - response to salt stress, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane, GO:0042742 - defense response to bacterium	TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
8959	WRKY89	OsWRKY89	WRKY GENE 89		TRANSCRIPTION FACTOR WRKY 89		8	DQ298186. WRKY48 in Zhang and Wang (2005) and Berri et al. (2009). WRKY74 in Wu et al. (2005) in Sun et al. 2014. WRKY82 in Ryu et al. (2006) and Ross et al. (2007), Xu et al. 2018. LOC_Os08g17400.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0276200	LOC_Os08g17400.1		0		GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
8960	WRKY94	OsWRKY94	WRKY GENE 94		TRANSCRIPTION FACTOR WRKY		12	LOC_Os12g40570. WRKY89 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY102 in Wu et al. (2005). WRKY83 in Ryu et al. (2006) and Ross et al. (2007).	 Tolerance and resistance - Disease resistance	Os12g0597700	LOC_Os12g40570.2, LOC_Os12g40570.1		0		GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
8961	WRKY85	OsWRKY85	WRKY GENE 85	WRKY transcription factor 85, Rice WRKY gene85	TRANSCRIPTION FACTOR WRKY 85		6	WRKY85 (P0702F05.11) in Qiu et al. 2004.		Os06g0157800,Os06g0158100			0				
8962	WRKY104	OsWRKY104	WRKY GENE 104		TRANSCRIPTION FACTOR WRKY104		11	LOC_Os11g02520. WRKY9 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY89 in Wu et al. (2005). WRKY100 in Ross et al.(2007). WRKY93 (AC123514_59764~60804 bp) in Qiu et al. 2004, Rice WRKY Working Group 2012. WRKY93 and WRKY104 in Choi et al. 2017.	 Tolerance and resistance - Disease resistance	Os11g0117400	LOC_Os11g02520.1		0		GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
8963	PIN5C	PIN5B, OsPIN5b, OsPIN5c	PIN PROTEIN 5C	PIN PROTEIN 5B	PIN PROTEIN 5C		9	BR000835. OsPIN5b in Zou et al. 2014.	 Biochemical character	Os09g0505400	LOC_Os09g32770.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8964	PIN5B	PIN5C, OsPIN5c, OsPIN5b	PIN PROTEIN 5B	PIN PROTEIN 5C	PIN PROTEIN 5B		8	LOC_Os08g41720. BR000836. OsPIN5c in Zou et al. 2014.	 Biochemical character	Os08g0529000	LOC_Os08g41720.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8965	PIN8	OsPIN8	PIN PROTEIN 8		PIN PROTEIN 8		1	BR000837.	 Biochemical character	Os01g0715600	LOC_Os01g51780.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8966	PIN9	OsPIN9	PIN PROTEIN 9		PIN PROTEIN 9		1	LOC_Os01g58860. BR000838. GO:1901698: response to nitrogen compound.	 Biochemical character,  Vegetative organ - Root	Os01g0802700	LOC_Os01g58860.1		0		GO:0009735 - response to cytokinin stimulus, GO:0009725 - response to hormone stimulus, GO:0009733 - response to auxin stimulus, GO:0048364 - root development, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000656 - root development trait, TO:0000401 - plant growth hormone sensitivity, TO:0000011 - nitrogen sensitivity	PO:0007520 - root development stage 
8967	WRKY81	OsWRKY81, OsWRKY33	WRKY GENE 81		TRANSCRIPTION FACTOR WRKY		3	LOC_Os03g33012. AF193802. AY302436. WRKY84 in Ryu et al. (2006) and Ross et al. (2007). WRKY107 in Berri et al. (2009). OsWRKY33 in Koo et al. 2009. WRKY81 and WRKY120 in Choi et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os03g0444900	LOC_Os03g33012.1		0		GO:0009863 - salicylic acid mediated signaling pathway, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0080027 - response to herbivore, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance, TO:0000454 - stem borer resistance, TO:0000112 - disease resistance	
8968	FRO1	OsFRO1	FERRIC REDUCTASE 1		FERRIC REDUCTASE 1			AB126084	 Biochemical character				0				
8969	FRO2	OsFRO2	FERRIC REDUCTASE 2	ferric reductase oxidase 2	FERRIC REDUCTASE 2		4	AB126085. ferric chelate reductase.	 Biochemical character	Os04g0578600	LOC_Os04g48930.4, LOC_Os04g48930.3, LOC_Os04g48930.2, LOC_Os04g48930.1		0		GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0050660 - FAD binding		
8971	CAM61	CaM61, OsCaM61, OsCML1, OsCML1d	CALMODULIN 61	Calmodulin-61, Calmodulin-like 1, calmodulin-like protein, CaM-like protein	CALMODULIN 61		1	U37936. Q8S1Y9, Q40642. LOC_Os01g59530.	 Biochemical character	Os01g0810300 	LOC_Os01g59530.2, LOC_Os01g59530.1	GR:0061338	0		GO:0005509 - calcium ion binding, GO:0016020 - membrane		
8972	NAC36	ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2	NAC DOMAIN-CONTAINING PROTEIN 36	IDE-binding factor 2, NAC domain-containing protein 36, NAC domain-containing protein 38, iron deficiency-responsive cis-acting element binding factor 2	NAC DOMAIN-CONTAINING PROTEIN 36		5	AB362160. LOC_Os05g35170. PO:0009005; root ; PO:0009025; leaf. Positive transcriptional regulator.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0426200	LOC_Os05g35170.5, LOC_Os05g35170.4, LOC_Os05g35170.3, LOC_Os05g35170.2, LOC_Os05g35170.1	GR:0080045	0		GO:0045449 - regulation of transcription, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0010106 - cellular response to iron ion starvation, GO:0003700 - transcription factor activity	TO:0000224 - iron sensitivity	PO:0009005 - root , PO:0009025 - vascular leaf 
8973	GLH10	glh10t, glh10(t), glh10	GREEN LEAFHOPPER RESISTANCE 10	Green leafhopper resistance10, Green leafhopper resistance 10, Green leafhopper resistance-10, Green leafhopper resistance-10t				the recessive gene of IR36. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060385	0		GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8974	GLH11	Glh11t, Glh11(t), Glh11	GREEN LEAFHOPPER RESISTANCE 11	Green leafhopper resistance11, Green leafhopper resistance 11, Green leafhopper resistance-11, Green leafhopper resistance-11t				dominant gene. PO:0009011; plant structure ; PO:0000003; whole plant.  the dominant gene of IR20965-11-3-3.	 Tolerance and resistance - Insect resistance			GR:0060386	0		GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8975	PITP	Pi-tp(t), Pitp(t), Pi-tp	PYRICULARIA ORYZAE RESISTANCE TP	Pyricularia oryzae resistance-tp, Magnaporthe grisea resistance-tp			1	PO:0009025; leaf.	 Tolerance and resistance - Insect resistance			GR:0061458	0	114.1	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
8976	PITQ6	Pi-tq6, Pitq6	PYRICULARIA ORYZAE RESISTANCE TQ6	Pyricularia oryzae resistance tq6, Magnaporthe grisea resistance tq6			12	Original line is Teqing (Indica). Map position (29.2-47.5 cM). PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060665	0		GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
8978	PILM2	Pi-lm2, Pilm2, Pi lm2, Pib2	PYRICULARIA ORYZAE RESISTANCE LM2	Pyricularia oryzae resistance lm2, Magnaporthe grisea resistance lm2			11	Original line is Lemont(Japonica). Map position (56.2-117.9 cM). Pi-lm2 might be the Pi-kh allele known to be in Dawn, an ancestor of Lemont (Tabien  et al. 2002). Pi-lm2 is synonymous to Pib2 (Koide et al. 2009).	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	
8979	AOS3	OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2	ALLENE OXIDE SYNTHASE 3	allene oxide synthase3, Allene oxide synthase 3, HYDROPEROXIDE LYASE 2	ALLENE OXIDE SYNTHASE 3		2	EC=4.2.1.92 Q6Z6L1.	 Biochemical character	Os02g0218700	LOC_Os02g12680.1		0		GO:0009055 - electron carrier activity, GO:0009620 - response to fungus, GO:0010287 - plastoglobule, GO:0031408 - oxylipin biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0004497 - monooxygenase activity, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0005739 - mitochondrion, GO:0016829 - lyase activity, GO:0005506 - iron ion binding, GO:0047987 - hydroperoxide dehydratase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009611 - response to wounding, GO:0009978 - allene oxide synthase activity, GO:0020037 - heme binding		
8980	CAX1B	OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10	Ca(2+)/H(+) EXCHANGER 1B	Vacuolar cation/proton exchanger 1b, Ca(2+)/H(+) exchanger 1b, cation/H+ exchanger 1b, Na+/Ca2+ Exchanger 10, Sodium/calcium exchanger 10	Ca(2+)/H(+) EXCHANGER 1B		5	LOC_Os05g51610. AB112770. Q5TKG3. CAX3 in Singh et al. 2013. Oryza barthii: ObarCAX1b: OBART05G28070/OBART05G28050, Oryza brachyantha: ObraCAX1b: OB05G35550, Oryza glaberrima: OglaCAX1b: ORGLA05G0244200, Oryza glumipatula: OgluCAX1b: OGLUM05G29480, Oryza longistaminata: OlCAX1b: OLONG_007971, Oryza meridionalis: OmCAX1b: OMERI05G23910, Oryza nivara: OnCAX1b: ONIVA05G29950, Oryza punctata: OpCAX1b: OPUNC05G25670, Oryza rufipogon: OrCAX1b: ORUFI05G30040. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0594200	LOC_Os05g51610.1		0		GO:0055085 - transmembrane transport, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding, GO:0005773 - vacuole, GO:0006816 - calcium ion transport, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015297 - antiporter activity, GO:0051592 - response to calcium ion, GO:0009651 - response to salt stress	TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root 
8981	CAX1C	OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5	Ca(2+)/H(+) EXCHANGER 1C	Vacuolar cation/proton exchanger 1c, Ca(2+)/H(+) exchanger 1c, cation/H+ exchanger 1c, Na+/Ca2+ Exchanger 5, Sodium/calcium exchanger 5	Ca(2+)/H(+) EXCHANGER 1C		2	LOC_Os02g21009. AB112771. Q5KTQ9.  CAX4 in Singh et al. 2013. Oryza barthii: ObarCAX1c: OBART02G14010, Oryza brachyantha: ObraCAX1c: OB02G22370, Oryza glaberrima: OglaCAX1c: ORGLA02G0123900, Oryza glumipatula: OgluCAX1c: OGLUM02G13900, Oryza longistaminata: OlCAX1c: OLONG_010143, Oryza meridionalis: OmCAX1c: OMERI02G14510, Oryza nivara: OnCAX1c: ONIVA02G15170, Oryza punctata: OpCAX1c: OPUNC02G12430 (only partial length sequence available), Oryza rufipogon: OrCAX1c: ORUFI02G14210.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0314300	LOC_Os02g21009.2, LOC_Os02g21009.1		0		GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0005509 - calcium ion binding, GO:0055085 - transmembrane transport, GO:0009411 - response to UV, GO:0006816 - calcium ion transport, GO:0005773 - vacuole, GO:0015297 - antiporter activity	TO:0000160 - UV light sensitivity	PO:0025034 - leaf 
8982	CAX2	OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2	Ca(2+)/H(+) EXCHANGER 2	Vacuolar cation/proton exchanger 2, Ca(2+)/H(+) exchanger 2, cation/H+ exchanger 2, Na+/Ca2+ Exchanger 7, Sodium/calcium exchanger 7, OSCA channels 1.2	Ca(2+)/H(+) EXCHANGER 2		3	LOC_Os03g27960. AB112772. Q5KQN0. CAX5 in Singh et al. 2013. Oryza barthii: ObarCAX2: OBART03G20450, Oryza brachyantha: ObraCAX2: OB03G29660, Oryza glaberrima: OglaCAX2: ORGLA03G0191100, Oryza glumipatula: OgluCAX2: OGLUM03G21200, Oryza longistaminata: OlCAX2: OLONG_009358, Oryza nivara: OnCAX2: ONIVA03G22170, Oryza punctata: OpCAX2: OPUNC03G19280, Oryza rufipogon: OrCAX2: ORUFI03G21080.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0397400	LOC_Os03g27960.2, LOC_Os03g27960.1		0		GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0005773 - vacuole, GO:0006816 - calcium ion transport, GO:0008324 - cation transmembrane transporter activity, GO:0015297 - antiporter activity, GO:0055085 - transmembrane transport, GO:0009411 - response to UV, GO:0051592 - response to calcium ion, GO:0016021 - integral to membrane	TO:0006001 - salt tolerance, TO:0000160 - UV light sensitivity	
8983	CAX3	OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9	Ca(2+)/H(+) EXCHANGER 3	Vacuolar cation/proton exchanger 3, Ca(2+)/H(+) exchanger 3, cation/H+ exchanger 3, Na+/Ca2+ Exchanger 9, Sodium/calcium exchanger 9	Ca(2+)/H(+) EXCHANGER 3		4	LOC_Os04g55940. AB112773. Q6K1C4. CAX6 in Singh et al. 2013. Oryza barthii: ObarCAX3: OBART04G27810, Oryza brachyantha: ObraCAX3: OB04G34750, Oryza glaberrima: OglaCAX3: ORGLA04G0240500, Oryza glumipatula: OgluCAX3: OGLUM04G27670, Oryza longistaminata: OlCAX3: OLONG_021212, Oryza meridionalis: OmCAX3: OMERI04G23200, Oryza nivara: OnCAX3: ONIVA04G26230, Oryza punctata: OpCAX3: OPUNC04G25220, Oryza rufipogon: OrCAX3: ORUFI04G29410.	 Biochemical character	Os04g0653200	LOC_Os04g55940.2, LOC_Os04g55940.1		0		GO:0009411 - response to UV, GO:0016021 - integral to membrane, GO:0015297 - antiporter activity, GO:0008324 - cation transmembrane transporter activity, GO:0006816 - calcium ion transport, GO:0055085 - transmembrane transport, GO:0005509 - calcium ion binding, GO:0005773 - vacuole, GO:0051592 - response to calcium ion	TO:0000160 - UV light sensitivity	
8984	CDKB2;1 	Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1	CYCLIN-DEPENDENT KINASE B2;1	B-type cyclin-dependent kinase 2;1	CYCLIN-DEPENDENT KINASE B2;1		8	Q0J4I1. D64036. LOC_Os08g40170.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0512600	LOC_Os08g40170.2, LOC_Os08g40170.1		0		GO:0006970 - response to osmotic stress, GO:0006468 - protein amino acid phosphorylation, GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding, GO:0051301 - cell division, GO:0009524 - phragmoplast, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0009651 - response to salt stress, GO:0007067 - mitosis, GO:0005819 - spindle, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
8985	CYCA1;1	CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1	CYCLIN-A1-1	A-type cyclin 1;1, A-type cyclin 1-1	CYCLIN-A1-1		1	AB024986. Q7F830. LOC_Os01g13260. CYCA2.3 in Xu et al. 2014.	 Biochemical character	Os01g0233500	LOC_Os01g13260.1		0		GO:0005634 - nucleus, GO:0007067 - mitosis, GO:0051301 - cell division		
8986	CYCH;1	Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1	CYCLIN-H-1 	cyclin H homolog 1, cyclin H1, H-type cyclin 1, cyclin H-1, CYCLIN H-1	CYCLIN-H-1		3	Q10D80. AY387483 (AAR07076.1). LOC_Os03g52750. CDK-activating kinase complex.	 Biochemical character	Os03g0737600	LOC_Os03g52750.2, LOC_Os03g52750.1		0		GO:0007049 - cell cycle, GO:0051301 - cell division		
8987	EEF1BG	eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1	ELONGATION FACTOR 1B GAMMA	gamma-subunit of translation elongation factor 1B, elongation factor 1B gamma, ELONGATION FACTOR 1 GAMMA 1	ELONGATION FACTOR 1B GAMMA		2	D89802. Q9ZRI7.	 Biochemical character	Os02g0220600	LOC_Os02g12800.5, LOC_Os02g12800.4, LOC_Os02g12800.3, LOC_Os02g12800.2, LOC_Os02g12800.1		0		GO:0006414 - translational elongation, GO:0005853 - eukaryotic translation elongation factor 1 complex, GO:0003746 - translation elongation factor activity		
8988	EF1G		ELONGATION FACTOR 1 GAMMA-LIKE PROTEIN	elongation factor 1-gamma	ELONGATION FACTOR 1 GAMMA-LIKE PROTEIN		2	Q6YW46. AY224455. D22238, C96682, AU102118, C96770.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0220500	LOC_Os02g12794.3		0		GO:0006414 - translational elongation, GO:0003746 - translation elongation factor activity, GO:0005853 - eukaryotic translation elongation factor 1 complex	TO:0000432 - temperature response trait	
8990	FEN1B	OsFEN-1b	FLAP ENDONUCLEASE 1B	Flap endonuclease-1b	FLAP ENDONUCLEASE 1B		3	Q75LI2. AB088391.	 Biochemical character	Os03g0834000			0		GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0000287 - magnesium ion binding, GO:0004519 - endonuclease activity, GO:0003677 - DNA binding		
8991	GAPC	OsGapC3, OGapC3, OsGAPDH1, GAPDH1	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC 	glyceraldehydes-3-phosphate dehydrogenase, cytosolic GAPDH3, cytosolic glyceraldehyde-3-phosphate dehydrogenase 3	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC	gapdh1	8	LOC_Os08g03290. Q0J8A4, A2YQT7. U31676. GAPDH1 in Zhang et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0126300	LOC_Os08g03290.4, LOC_Os08g03290.3, LOC_Os08g03290.2, LOC_Os08g03290.1		0		GO:0055114 - oxidation reduction, GO:0005737 - cytoplasm, GO:0051287 - NAD or NADH binding, GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, GO:0009628 - response to abiotic stimulus, GO:0006096 - glycolysis, GO:0005634 - nucleus	TO:0000168 - abiotic stress trait	
8992	GLP8-3	OsGLP8-3, GER2	GERMIN-LIKE PROTEIN 8-3	Germin-like protein 8-3, germin-like protein 2	GERMIN-LIKE PROTEIN 8-3		8	Q6YZZ7. oxalate oxidase. D40492, AU174256. AF032972.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0189200	LOC_Os08g08970.1		0		GO:0009607 - response to biotic stimulus, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0002242 - defense response to parasitic plant	TO:0000432 - temperature response trait, TO:0000444 - parasitic weed, TO:0000179 - biotic stress trait	PO:0009010 - seed 
8993	GLP8-1	OsGLP8-1	GERMIN-LIKE PROTEIN 8-1	Germin-like protein 8-1	GERMIN-LIKE PROTEIN 8-1		8	Q6YZB2.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0188900	LOC_Os08g08920.1		0		GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast		
8994	GLN1;1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1	GLUTAMINE SYNTHETASE 1;1	cytosolic glutamine synthethase 1;1, cytosolic glutamine synthase 1, glutamine synthetase 1;1, Glutamine synthetase, glutamine synthetase 1, glutamine synthetase shoot isozyme, glutamate:ammonia ligase gamma	GLUTAMINE SYNTHETASE 1;1		2	LOC_Os02g50240. X14245, AB037595, AB037664. P14656. C25787, AU102080. D15766. KC611121-KC611131 (O. sativa and wild rice species, partial cds). XB21 interacting protein (XB21IP).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0735200	LOC_Os02g50240.2, LOC_Os02g50240.1		0		GO:0009635 - response to herbicide, GO:0005737 - cytoplasm, GO:0004356 - glutamate-ammonia ligase activity, GO:0010431 - seed maturation, GO:0009414 - response to water deprivation, GO:0006807 - nitrogen compound metabolic process, GO:0010150 - leaf senescence, GO:0006542 - glutamine biosynthetic process, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0000432 - temperature response trait, TO:0000360 - leaf elongation rate, TO:0002661 - seed maturation, TO:0006002 - proline content, TO:0000276 - drought tolerance, TO:0006032 - panicle size, TO:0005007 - glufosinate sensitivity, TO:0000249 - leaf senescence, TO:0002633 - fruit ripening trait, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000436 - spikelet sterility	PO:0000048 - leaf lamina vascular system , PO:0007632 - seed maturation stage , PO:0001054 - 4 leaf senescence stage 
8995	GLN1;2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2	GLUTAMINE SYNTHETASE 1;2	cytosolic glutamine synthethase 1;2, cytosolic glutamine synthase 2, glutamine synthetase 1;2, glutamine synthetase 1	GLUTAMINE SYNTHETASE 1;2	gs1;2, gs1-2	3	LOC_Os03g12290. X14244, AB180688. P14654.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os03g0223400	LOC_Os03g12290.1		0		GO:0009691 - cytokinin biosynthetic process, GO:0004356 - glutamate-ammonia ligase activity, GO:0005524 - ATP binding, GO:0006542 - glutamine biosynthetic process, GO:0005737 - cytoplasm, GO:0009808 - lignin metabolic process, GO:0010223 - secondary shoot formation, GO:0019676 - ammonia assimilation cycle, GO:0006529 - asparagine biosynthetic process, GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus	TO:0000346 - tiller number, TO:0000152 - panicle number, TO:0000371 - yield trait, TO:0000329 - tillering ability, TO:0002673 - amino acid content, TO:0000249 - leaf senescence, TO:0000074 - blast disease, TO:0002660 - cytokinin content	PO:0006343 - axillary shoot system , PO:0004709 - axillary bud , PO:0009005 - root , PO:0001054 - 4 leaf senescence stage 
8996	GLUB4	GluB4, GluB-5	GLUTELIN B4		GLUTELIN B4		2	LOC_Os02g16830. X14393. AB093593. P14614. EU264106 (promoter sequence). AY427571 (promoter). GluB-5 in Qu et al. 2008. 	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os02g0268300	LOC_Os02g16830.1		0		GO:0045735 - nutrient reservoir activity, GO:0009279 - cell outer membrane, GO:0006952 - defense response	TO:0002661 - seed maturation	
8997	GLUB5	GluB5, GLU2.3	GLUTELIN B5	gluten 2.3	GLUTELIN B5		2	LOC_Os02g16820. AU094576. AB093593 (truncated form in Lgc1). Q6ERU3. GLU2.3 in Xu et al. 2016.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os02g0268100	LOC_Os02g16820.1		0		GO:0009279 - cell outer membrane, GO:0006952 - defense response, GO:0009415 - response to water, GO:0000003 - reproduction, GO:0045735 - nutrient reservoir activity, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0009791 - post-embryonic development	TO:0000237 - water stress trait, TO:0006001 - salt tolerance, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
8998	HKT1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1	HIGH-AFFINITY K+ TRANSPORTER 1	High-affinity K+ Transporter 1	HIGH-AFFINITY K+ TRANSPORTER 1	oshkt2;1, oshkt2;1-1, oshkt2;1-2, oshkt2;1-3	6	AB061311, AB061312, AF450299, AF313388, AJ491852, BAB61790. A2YGP9, Q0D9S3. sodium ion transporter. class II HKT transporter. OsHKT1;1 in Sun et al. 2014. AY885801-AY885828 and DQ374748-DQ374774 (O. sativa and other wild rice species, partial cds). OsHKT2;1 in Fang et al. 2019.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0701700	LOC_Os06g48810.1		0		GO:0055085 - transmembrane transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding, GO:0031402 - sodium ion binding, GO:0006813 - potassium ion transport, GO:0006814 - sodium ion transport, GO:0008324 - cation transmembrane transporter activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0055078 - sodium ion homeostasis, GO:0055075 - potassium ion homeostasis	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
8999	HKT2	OsHKT2, OsHKT2;2	HIGH-AFFINITY K+ TRANSPORTER 2	High-affinity K+ Transporter 2	HIGH-AFFINITY K+ TRANSPORTER 2			AB061313, BAB61791. Q93XI5. potassium-sodium symporter. OsHKT2;2 is absent from the japonica cultivar Nipponbare genome (Cotsaftis et al. 2011).	 Biochemical character				0		GO:0006813 - potassium ion transport, GO:0006814 - sodium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0031402 - sodium ion binding, GO:0055085 - transmembrane transport, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding		
9001	HKT4	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4	HIGH-AFFINITY K+ TRANSPORTER 4	High-affinity K+ Transporter 4, Root Na+ Content 4	HIGH-AFFINITY K+ TRANSPORTER 4	oshkt1;1	4	AJ491815, AJ491816. Q7XPF8. OsHKT2 in Tripathy et al. 2015. TO:1000041: root system sodium content. TO:0020004: shoot system sodium content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0607500	LOC_Os04g51820.3, LOC_Os04g51820.2, LOC_Os04g51820.1		0		GO:0006813 - potassium ion transport, GO:0006814 - sodium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030955 - potassium ion binding, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0031402 - sodium ion binding, GO:0055085 - transmembrane transport, GO:0055078 - sodium ion homeostasis	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000608 - sodium content	
9002	HXK10	OsHXK10	HEXOKINASE-10	Hexokinase 10	HEXOKINASE-10		5	EC=2.7.1.1 AC108874, DQ116392. Q2KNB5.	 Biochemical character	Os05g0375100	LOC_Os05g31110.1		0		GO:0016021 - integral to membrane, GO:0009555 - pollen development, GO:0004396 - hexokinase activity, GO:0005524 - ATP binding, GO:0009527 - plastid outer membrane, GO:0009507 - chloroplast, GO:0006096 - glycolysis		PO:0001007 - pollen development stage 
9003	HXK2	OsHXK2	HEXOKINASE-2	Hexokinase 2	HEXOKINASE-2		5	EC=2.7.1.1 AC121365, DQ116384. Q2KNB9.	 Biochemical character	Os05g0532600	LOC_Os05g45590.1		0		GO:0005524 - ATP binding, GO:0006096 - glycolysis, GO:0004396 - hexokinase activity		
9004	HXK3	OsHXK3	HEXOKINASE-3	Hexokinase 3	HEXOKINASE-3		1	EC=2.7.1.1 Q2KNB4. AP003412, DQ116385.	 Biochemical character	Os01g0940100	LOC_Os01g71320.1		0		GO:0004396 - hexokinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0005741 - mitochondrial outer membrane, GO:0006096 - glycolysis, GO:0009555 - pollen development		PO:0001007 - pollen development stage 
9005	HXK4	OsHXK4	HEXOKINASE-4	Hexokinase 4	HEXOKINASE-4		7	EC=2.7.1.1 Q94JW5. AP005257, DQ116386.	 Biochemical character	Os07g0197100	LOC_Os07g09890.1		0		GO:0004396 - hexokinase activity, GO:0005524 - ATP binding, GO:0009570 - chloroplast stroma, GO:0006096 - glycolysis		
9006	HXK5	OsHXK5	HEXOKINASE-5	Hexokinase 5	HEXOKINASE-5	OsHXK5-G113D, OsHXK5-S186A	5	EC=2.7.1.1 Q5W676. AC118284, DQ116387. LOC_Os05g44760.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0522500	LOC_Os05g44760.1		0		GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0010182 - sugar mediated signaling, GO:0006096 - glycolysis, GO:0045014 - negative regulation of transcription by glucose, GO:0009507 - chloroplast, GO:0004396 - hexokinase activity, GO:0050832 - defense response to fungus, GO:0009527 - plastid outer membrane	TO:0000074 - blast disease	
9007	HXK6	OsHXK6	HEXOKINASE-6	Hexokinase 6	HEXOKINASE-6	OsHXK6-G112D, OsHXK6-S185A	1	EC=2.7.1.1 Q8LQ68. AP003768, DQ116388. LOC_Os01g53930.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os01g0742500	LOC_Os01g53930.2, LOC_Os01g53930.1		0		GO:0045449 - regulation of transcription, GO:0005739 - mitochondrion, GO:0006397 - mRNA processing, GO:0009555 - pollen development, GO:0016021 - integral to membrane, GO:0045014 - negative regulation of transcription by glucose, GO:0030528 - transcription regulator activity, GO:0010182 - sugar mediated signaling, GO:0009527 - plastid outer membrane, GO:0009507 - chloroplast, GO:0006096 - glycolysis, GO:0005524 - ATP binding, GO:0004396 - hexokinase activity	TO:0000308 - male fertility restoration trait	
9008	HXK7	OsHXK7	HEXOKINASE-7	Hexokinase 7, Hexokinase7, hexokinase 1	HEXOKINASE-7	oshxk7-1, oshxk7-2, OsHXK7-G76D, OsHXK7-S148A	5	EC=2.7.1.1 Q1WM16. AC093954, DQ116389. hexokinase 1 in Yamaguchi et al. 2004. C93441, AU166412. LOC_Os05g09500.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0187100	LOC_Os05g09500.1		0		GO:0006096 - glycolysis, GO:0045014 - negative regulation of transcription by glucose, GO:0009408 - response to heat, GO:0034059 - response to anoxia, GO:0004396 - hexokinase activity, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0010182 - sugar mediated signaling, GO:0009845 - seed germination, GO:0005975 - carbohydrate metabolic process, GO:0009555 - pollen development	TO:0000432 - temperature response trait	PO:0001007 - pollen development stage , PO:0007057 - 0 seed germination stage 
9009	HXK8	OsHXK8	HEXOKINASE-8	Hexokinase 8	HEXOKINASE-8		1	EC=2.7.1.1 Q1WM15. AP002734, DQ116390. 	 Biochemical character	Os01g0190400	LOC_Os01g09460.1		0		GO:0006096 - glycolysis, GO:0005524 - ATP binding, GO:0004396 - hexokinase activity		
9010	HXK9	OsHXK9	HEXOKINASE-9	Hexokinase 9	HEXOKINASE-9		1	EC=2.7.1.1 Q2KNB7. AP003292, DQ116391.	 Biochemical character	Os01g0722700	LOC_Os01g52450.2, LOC_Os01g52450.1		0		GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0009527 - plastid outer membrane, GO:0004396 - hexokinase activity, GO:0009507 - chloroplast, GO:0006096 - glycolysis		
9011	LTP2	nsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3	LIPID TRANSFER PROTEIN 2	non-specific lipid-transfer protein 2, type-2 lipid transfer protein, Nonspecific Lipid Transfer Protein-2, lipid transfer protein-2	LIPID TRANSFER PROTEIN 2		3	Q10ST8. A2XBN5. P83219. CT829990. KJ174106. PDB code: 1l6h. LOC_Os03g02050.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0111300	LOC_Os03g02050.1		0		GO:0006869 - lipid transport, GO:0009409 - response to cold, GO:0008289 - lipid binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
9012	ND1	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, NRL1	NARROW LEAF AND DWARF 1	CURLED LEAF AND DWARF 1, Dwarf and narrow-leaf 3, narrow and rolled leaf 1	CELLULOSE SYNTHASE LIKE D4 	cd1, dnl3, nrl1	12	LOC_Os12g36890. AF435644. ABA99552. AU078363, AU082165, AU082190, AU082189. Q2QNS6. CSLD4 is mainly expressed in rapidly growing tissues. CSLD4 is a Golgi-localized protein. CSLD4 mutation alters wall formation. TO:0000748: leaf morphology trait. PO:0030123: panicle inflorescence.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os12g0555600	LOC_Os12g36890.1		0		GO:0007047 - cell wall organization, GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0051301 - cell division, GO:0009740 - gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0032502 - developmental process, GO:0000139 - Golgi membrane	TO:0000207 - plant height, TO:0000370 - leaf width, TO:0000166 - gibberellic acid sensitivity, TO:0000145 - internode length, TO:0000472 - vascular bundle number	PO:0020104 - leaf sheath , PO:0009005 - root 
9013	CSLD2	OsCSLD2	CELLULOSE SYNTHASE LIKE D2		CELLULOSE SYNTHASE LIKE D2		6	LOC_Os06g02180. Q9LHZ7. GO:0071555: cell wall organization.	 Biochemical character	Os06g0111800	LOC_Os06g02180.1		0		GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane		
9014	CSLD3	OsCSLD3	CELLULOSE SYNTHASE LIKE D3 		CELLULOSE SYNTHASE LIKE D3 		8	BK000093. Q7EZW6. LOC_Os08g25710.	 Biochemical character	Os08g0345500	LOC_Os08g25710.1		0		GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity		
9015	CSLD5	OsCSLD5	CELLULOSE SYNTHASE LIKE D5 		CELLULOSE SYNTHASE LIKE D5		6	LOC_Os06g22980.	 Biochemical character	Os06g0336500	LOC_Os06g22980.1		0				
9016	SPL28		SPOTTED LEAF 28		CLATHRIN-ASSOCIATED ADAPTOR PROTEIN COMPLEX 1		1	SPL28 is responsible for spotted leaf and early senescence in rice. Regulation of vesicular trafficking, Disease resistance. Q0JK13, NM_001050536.	 Tolerance and resistance - Lesion mimic	Os01g0703600	LOC_Os01g50770.2, LOC_Os01g50770.1		0		GO:0006952 - defense response		
9017	ETR4	PK3, OsPK3, OsETR4, OS-ETR4	ETHYLENE RESPONSE 4	subfamily I ethylene receptor	PROTEIN KINASE		7	LOC_Os07g15540. AY434734, AF497626, Q71HN7	 Seed - Physiological traits - Storage substances	Os07g0259100	LOC_Os07g15540.1		0		GO:0000156 - two-component response regulator activity, GO:0005789 - endoplasmic reticulum membrane, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009873 - ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0048573 - photoperiodism, flowering, GO:0000155 - two-component sensor activity	TO:0000173 - ethylene sensitivity, TO:0000137 - days to heading, TO:0002616 - flowering time	
9019	HKT3	OsHKT3, OsHKT2;3	HIGH-AFFINITY K+ TRANSPORTER 3 		HIGH-AFFINITY K+ TRANSPORTER 3 	oshkt2;3	1	AJ491819, AJ491820. Q8L481. class II HKT transporter.	 Biochemical character	Os01g0532600	LOC_Os01g34850.1		0		GO:0006814 - sodium ion transport, GO:0008324 - cation transmembrane transporter activity, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9020	HKT5	OsHKT5, OsHKT1;2	HIGH-AFFINITY K+ TRANSPORTER 5		HIGH-AFFINITY K+ TRANSPORTER 5		4	AJ506745	 Biochemical character				0		GO:0008324 - cation transmembrane transporter activity, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0006814 - sodium ion transport, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0031402 - sodium ion binding, GO:0030955 - potassium ion binding		
9021	HKT6	OsHKT6, OsHKT1;3, HKT1;3	HIGH-AFFINITY K+ TRANSPORTER 6		HIGH-AFFINITY K+ TRANSPORTER 6		2	AJ491817, AJ491818. Q6H501. LOC_Os02g07830.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0175000	LOC_Os02g07830.1		0		GO:0006814 - sodium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0009651 - response to salt stress, GO:0031402 - sodium ion binding, GO:0055085 - transmembrane transport, GO:0006813 - potassium ion transport, GO:0005886 - plasma membrane, GO:0030955 - potassium ion binding	TO:0006001 - salt tolerance	
9022	HKT8	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1	HIGH-AFFINITY K+ TRANSPORTER 8	shoot K+ concentration (QTL)-1(t)	HIGH-AFFINITY K+ TRANSPORTER 8	HKT1;5NB, HKT1;5K	1	AJ108663, DQ148410. A2WNZ9. This QTL controls shoot K+ concentration in relation to salt tolerance, being located on chromosome 1 between marker C1211 and S2139. BAF04762, ABN48306. Q0JNB6, A2WNZ9. EF589340 - EF589342.  EF373553, HQ162137. JQ695808-JQ695816 (O.sativa, O. rufipogon, O. glaberrima). OsHKT1;5 in Cui et al. 2016, He et al. 2016, Chen et al. 2018. GO:0036376: sodium ion export across plasma membrane.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0307500	LOC_Os01g20160.1		0		GO:0055085 - transmembrane transport, GO:0031402 - sodium ion binding, GO:0006813 - potassium ion transport, GO:0006814 - sodium ion transport, GO:0006950 - response to stress, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0009753 - response to jasmonic acid stimulus, GO:0055075 - potassium ion homeostasis, GO:0055078 - sodium ion homeostasis, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000525 - sodium to potassium content ratio, TO:0000608 - sodium content	PO:0005020 - vascular bundle , PO:0005352 - xylem , PO:0005417 - phloem 
9023	PI29	Pi-29(t), Pi29(t)	PYRICULARIA ORYZAE RESISTANCE 29	Pyricularia oryzae resistance 29, Blast resistance 29			8	Pi-29(t) may correspond to the Pi-11(t) because these two blast resistance genes map in the same area of chromosome 8. PO:0009025; leaf. Original line is IR64 (Indica).	 Tolerance and resistance - Disease resistance			GR:0061352	0	69.0	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
9024	PAIR3		HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3		COILD-COIL PROTEIN	pair3, pair3-1, pair3-2	10	FJ449711, FJ449712, B9G5N1, Homologous chromosome pairing and synapsis in meiosis.  T-DNA insertion lines, pair3-1 and pair3-2, exhibit male and female sterility.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os10g0405500	LOC_Os10g26560.1		0		GO:0000228 - nuclear chromosome, GO:0009554 - megasporogenesis, GO:0007129 - synapsis, GO:0000237 - leptotene, GO:0000238 - zygotene, GO:0009556 - microsporogenesis, GO:0005634 - nucleus		
9025	HKT9	OsHKT9, OsHKT2;4	HIGH-AFFINITY K+ TRANSPORTER 9		HIGH-AFFINITY K+ TRANSPORTER 9	oshkt2;4	6	AJ491854, AJ491855. Q8L4K5. class II HKT transporter.	 Biochemical character	Os06g0701600	LOC_Os06g48800.1		0		GO:0031402 - sodium ion binding, GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0008324 - cation transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0006814 - sodium ion transport		
9026	ARK1	OsARK1	ALDO-KETO REDUCTASE 1	Aldo-Keto reductase 1	ALDO-KETO REDUCTASE 1		1	Overexpression  if OsAKR1 increases oxidative and heat stress tolerance by malondialdehyde and methylglyoxal detoxification.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0847600	LOC_Os01g62860.1		0		GO:0018920 - glyphosate metabolic process, GO:0009635 - response to herbicide, GO:0016491 - oxidoreductase activity, GO:0019632 - shikimate metabolic process	TO:0000058 - herbicide sensitivity, TO:0005006 - glyphosate sensitivity	
9028	AKR2	OsAKR2, AKR4C14	ALDO-KETO REDUCTASE 2		ALDO-KETO REDUCTASE 2		1	GQ227709, ACS92968. D15203. Aldo-Keto Reductase, AKR4 subfamily C.	 Biochemical character	Os01g0847700	LOC_Os01g62870.2, LOC_Os01g62870.1		0		GO:0016491 - oxidoreductase activity, GO:0046686 - response to cadmium ion, GO:0005829 - cytosol, GO:0005634 - nucleus		
9029	AKR3	OsAKR3, OsALR1, ALR1	ALDO-KETO REDUCTASE 3	aldose reductase 1	ALDO-KETO REDUCTASE 3		1		 Biochemical character	Os01g0847800	LOC_Os01g62880.2, LOC_Os01g62880.1		0		GO:0016491 - oxidoreductase activity		
9031	RNRL2		RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 2 		RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 2 		2	EU602346,chloroplast biogenesis	 Biochemical character	Os02g0804900	LOC_Os02g56100.1		0				
9032	RNRS2		RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2   		RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2   		6	EU602347. Chloroplast biogenesis.	 Biochemical character	Os06g0127900	LOC_Os06g03720.1		0		GO:0009263 - deoxyribonucleotide biosynthetic process, GO:0009658 - chloroplast organization, GO:0055114 - oxidation reduction		
9033	ELIP		EARLY LIGHT INDUCIBLE PROTEIN		EARLY LIGHT INDUCIBLE PROTEIN		1	D85513.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0246400	LOC_Os01g14410.1		0				
9034	CRP		COLD REGULATED PROTEIN		COLD REGULATED PROTEIN		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0468800	LOC_Os05g39250.1		0				
9035	DHN6	OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21	DEHYDRIN 6	late embryogenesis abundant protein 25, endosperm-specific gene 143	DEHYDRIN 6		11	LOC_Os11g26570. CT828256.	 Tolerance and resistance - Stress tolerance	Os11g0451700	LOC_Os11g26570.1		0		GO:0009414 - response to water deprivation, GO:0009631 - cold acclimation, GO:0009415 - response to water, GO:0006950 - response to stress, GO:0009737 - response to abscisic acid stimulus, GO:0005829 - cytosol		
9036	LEA14	Lea14A, OsLEA5, OsEnS-2	LATE EMBRYOGENESIS ABUNDANT PROTEIN	late embryogenesis abundant protein 5, endosperm-specific gene 2	LATE EMBRYOGENESIS ABUNDANT PROTEIN		1	LOC_Os01g12580.	 Tolerance and resistance - Stress tolerance	Os01g0225600	LOC_Os01g12580.1		0		GO:0009269 - response to desiccation, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009644 - response to high light intensity		
9037	WSI18	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18	WATER STRESS INDUCIBLE PROTEIN 18	late embryogenesis abundant protein 14, water stress-induced 18	WATER STRESS INDUCIBLE PROTEIN 18	wsi18j	1	AB001682 (promoter sequence). GQ903792 (promoter sequence). D26536. AF246702 (promoter sequence). LOC_Os01g50910. Q94JF2.	 Tolerance and resistance - Stress tolerance	Os01g0705200	LOC_Os01g50910.2, LOC_Os01g50910.1		0		GO:0005634 - nucleus		
9038	TPP2	OsTPP2	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2	trehalose-6-phosphate phosphatase 2	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2		10	AB277360. BAF34519. LOC_Os10g40550.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0553300	LOC_Os10g40555.1, LOC_Os10g40550.2, LOC_Os10g40550.1		0		GO:0004805 - trehalose-phosphatase activity, GO:0009409 - response to cold, GO:0005992 - trehalose biosynthetic process	TO:0000303 - cold tolerance	
9039	TRE1	OsTRE, OsTRE1	TREHALASE 1	trehalase 1	TREHALASE 1		10	Q9FWC1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0521000	LOC_Os10g37660.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004555 - alpha,alpha-trehalase activity, GO:0005993 - trehalose catabolic process	TO:0000328 - sucrose content, TO:0006005 - fructose content, TO:0000300 - glucose content, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000333 - sugar content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000291 - carbohydrate content	
9040	TPS1	OsTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE 1		TREHALOSE-6-PHOSPHATE SYNTHASE 1		5	LOC_Os05g44210. HM050424. The genome of rice contains 11 OsTPS genes, and only OsTPS1 shows TPS activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0518600	LOC_Os05g44210.2, LOC_Os05g44210.1		0		GO:0070413 - trehalose metabolism in response to stress, GO:0005737 - cytoplasm, GO:0005992 - trehalose biosynthetic process, GO:0005829 - cytosol, GO:0016311 - dephosphorylation, GO:0003824 - catalytic activity		
9041	TPS2	OsTPS2	TREHALOSE-6-PHOSPHATE SYNTHASE 2		TREHALOSE-6-PHOSPHATE SYNTHASE 2 		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0749400	LOC_Os01g54560.3, LOC_Os01g54560.2, LOC_Os01g54560.1		0				
9042	TPS3	OsTPS3	TREHALOSE-6-PHOSPHATE SYNTHASE 3		TREHALOSE-6-PHOSPHATE SYNTHASE 3		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0730300	LOC_Os01g53000.2, LOC_Os01g53000.1		0				
9043	TPS4	OsTPS4	 TREHALOSE-6-PHOSPHATE SYNTHASE 4		 TREHALOSE-6-PHOSPHATE SYNTHASE 4		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0224300	LOC_Os03g12360.2, LOC_Os03g12360.1		0				
9044	TPS5	OsTPS5	 TREHALOSE-6-PHOSPHATE SYNTHASE 5		 TREHALOSE-6-PHOSPHATE SYNTHASE 5		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0790500	LOC_Os02g54820.3, LOC_Os02g54820.2, LOC_Os02g54820.1		0				
9045	TPS6	OsTPS6	TREHALOSE-6-PHOSPHATE SYNTHASE 6		TREHALOSE-6-PHOSPHATE SYNTHASE 6		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0517200	LOC_Os05g44100.1		0				
9046	TPS7	OsTPS7	"	TREHALOSE-6-PHOSPHATE SYNTHASE 7"		"	TREHALOSE-6-PHOSPHATE SYNTHASE 7"		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0414700	LOC_Os08g31980.1		0				
9047	TPS8	OsTPS8, OsTPS1, TPS1	TREHALOSE-6-PHOSPHATE SYNTHASE 8	trehalose-6-phosphate synthase 1	TREHALOSE-6-PHOSPHATE SYNTHASE 8		8	LOC_Os08g34580. OsTPS1 in Liu et al. 2013, Zhang et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0445700	LOC_Os08g34580.2, LOC_Os08g34580.1		0				
9048	TPS9	OsTPS9	TREHALOSE-6-PHOSPHATE SYNTHASE 6		TREHALOSE-6-PHOSPHATE SYNTHASE 6		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0427800	LOC_Os09g25890.2, LOC_Os09g25890.1		0				
9049	TPS10	OsTPS10	"	TREHALOSE-6-PHOSPHATE SYNTHASE 10"		"	TREHALOSE-6-PHOSPHATE SYNTHASE 10"		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0397300	LOC_Os09g23350.1		0				
9050	TPS11	OsTPS11	"	TREHALOSE-6-PHOSPHATE SYNTHASE 11"		"	TREHALOSE-6-PHOSPHATE SYNTHASE 11"		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0376800	LOC_Os09g20990.1		0				
9051	BC12	bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12	BRITTLE CULM 12	Gibberellin-deficient dwarf 1, gibberellin-deficient dwarf1, kinesin-4 protein BRITTLE CULM12, kinesin-like protein BRITTLE CULM12, OsKinesin-4	KINESIN-4 PROTEIN	bc12-1, bc12-2, gdd1	9	LOC_Os09g02650. Q6YUL8.	 Vegetative organ - Culm	Os09g0114500	LOC_Os09g02650.1		0		GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0040008 - regulation of growth, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005871 - kinesin complex, GO:0005856 - cytoskeleton, GO:0006351 - transcription, DNA-dependent, GO:0003777 - microtubule motor activity, GO:0005524 - ATP binding, GO:0007018 - microtubule-based movement, GO:0005874 - microtubule, GO:0008574 - plus-end-directed microtubule motor activity, GO:0008017 - microtubule binding, GO:0043565 - sequence-specific DNA binding, GO:0007049 - cell cycle, GO:0010215 - cellulose microfibril organization, GO:0009832 - plant-type cell wall biogenesis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0042127 - regulation of cell proliferation		
9052	BC1L4	OsBC1L4	BRITTLE CULM-LIKE 4		COBRA-LIKE PROTEIN								0				
9053	CESA1	OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1	CELLULOSE SYNTHASE A1	Cellulose synthase A catalytic subunit 1 [UDP-forming], Cellulose synthase A catalytic subunit 1, RSW1-like cellulose synthase catalytic subunit	CELLULOSE SYNTHASE A1		5	AF030052, Q6AT26. D39394. LOC_Os05g08370.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0176100	LOC_Os05g08370.1		0		GO:0008270 - zinc ion binding, GO:0009642 - response to light intensity, GO:0030244 - cellulose biosynthetic process, GO:0005886 - plasma membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane, GO:0007047 - cell wall organization	TO:0000460 - light intensity sensitivity	
9054	CESA2	OsCesA2, OsCESA2, OS_CESA02	CELLULOSE SYNTHASE A2	Cellulose synthase A catalytic subunit 2 [UDP-forming], Cellulose synthase A catalytic subunit 2	CELLULOSE SYNTHASE A2		3	Q84M43. LOC_Os03g59340.	 Biochemical character	Os03g0808100	LOC_Os03g59340.1		0		GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0005886 - plasma membrane, GO:0030244 - cellulose biosynthetic process, GO:0007047 - cell wall organization		
9055	CESA3	OsCesA3, OsCESA3, OS_CESA03	CELLULOSE SYNTHASE A3	Cellulose synthase A catalytic subunit 3 [UDP-forming], Cellulose synthase A catalytic subunit 3	CELLULOSE SYNTHASE A3		7	Q69V23. LOC_Os07g24190.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0424400	LOC_Os07g24190.3, LOC_Os07g24190.2, LOC_Os07g24190.1		0		GO:0007047 - cell wall organization, GO:0016021 - integral to membrane, GO:0009642 - response to light intensity, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane	TO:0000460 - light intensity sensitivity	
9056	CESA5	OsCesA5, OsCESA5, OS_CESA05	CELLULOSE SYNTHASE A5	Cellulose synthase A catalytic subunit 5 [UDP-forming], Cellulose synthase A catalytic subunit 5	CELLULOSE SYNTHASE A5		3	Q851L8. LOC_Os03g62090.	 Biochemical character	Os03g0837100	LOC_Os03g62090.1		0		GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0007047 - cell wall organization		
9057	CESA6	OsCesA6, OsCESA6, OS_CESA06	CELLULOSE SYNTHASE A6	Cellulose synthase A catalytic subunit 6 [UDP-forming], Cellulose synthase A catalytic subunit 6	CELLULOSE SYNTHASE A6		7	Q6YVM4. LOC_Os07g14850.	 Biochemical character	Os07g0252400	LOC_Os07g14850.1		0		GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0007047 - cell wall organization, GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane		
9058	CESA8	OsCesA8, OsCESA8, OS_CESA08, CesA8	CELLULOSE SYNTHASE A8	Cellulose synthase A catalytic subunit 8 [UDP-forming], Cellulose synthase A catalytic subunit 8, CELLULOSE SYNTHASE8	CELLULOSE SYNTHASE A8		7	Q84ZN6. LOC_Os07g10770.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0208500	LOC_Os07g10770.1		0		GO:0016021 - integral to membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0009642 - response to light intensity, GO:0030244 - cellulose biosynthetic process, GO:0007047 - cell wall organization	TO:0000460 - light intensity sensitivity	
9059	CESA10	OsCesA10, OsCESA10	CELLULOSE SYNTHASE A10	Cellulose synthase A catalytic subunit 10 [UDP-forming], Cellulose synthase A catalytic subunit 10	CELLULOSE SYNTHASE A10		12	LOC_Os12g29300. GO:0080181: lateral root branching. GO:0080147: root hair cell development.	 Biochemical character,  Vegetative organ - Root	Os12g0477200	LOC_Os12g29300.1		0		GO:0048364 - root development, GO:0007047 - cell wall organization, GO:0016021 - integral to membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process	TO:0000043 - root anatomy and morphology trait, TO:0000656 - root development trait	PO:0007520 - root development stage 
9060	CESA11	OsCesA11, OsCESA11, OsCLD1, CLD1	CELLULOSE SYNTHASE A11	Cellulose synthase A catalytic subunit 11 [UDP-forming], Cellulose synthase A catalytic subunit 11	CELLULOSE SYNTHASE A11		6	Q69XK5. LOC_Os06g39970. OsCLD1 in Shi et al. 2016.	 Biochemical character	Os06g0601600/Os06g0600550			0		GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0007047 - cell wall organization, GO:0005886 - plasma membrane, GO:0016760 - cellulose synthase (UDP-forming) activity		
9061	DWARF4	OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2	DWARF4	brassinosteroid C-22 hydroxylase, Cytochrome P450 90B2	CYTOCHROME P450 90B2	dwarf4-1	3	LOC_Os03g12660. Q5CCK3. AB206579. KC610990-KC611001 (O. sativa and wild rice species, partial cds).	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os03g0227700	LOC_Os03g12660.1		0		GO:0010268 - brassinosteroid homeostasis, GO:0010358 - leaf shaping, GO:0016021 - integral to membrane, GO:0016125 - sterol metabolic process, GO:0016132 - brassinosteroid biosynthetic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0048366 - leaf development, GO:0010012 - steroid 22-alpha hydroxylase activity, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0009741 - response to brassinosteroid stimulus, GO:0005886 - plasma membrane, GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth, GO:0005783 - endoplasmic reticulum, GO:0009867 - jasmonic acid mediated signaling pathway		
9062	CPD1	OsCPD1, CYP90A3, CYP90A3/OsCPD1	CPD1	brassinosteroid C-23 hydrozylase, CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM 1, Cytochrome P450 90A3	CYTOCHROME P450 90A3	oscpd1-1, oscpd1-2	11	AB206580. one of the orthologs to the Arabidopsis CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM (CPD) gene.	 Vegetative organ - Culm	Os11g0143200	LOC_Os11g04710.1		0		GO:0004497 - monooxygenase activity, GO:0009637 - response to blue light, GO:0016132 - brassinosteroid biosynthetic process, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0002676 - brassinosteroid content, TO:0000159 - blue light sensitivity	
9063	DWARF4L	OsDWARF4L	DWARF4-LIKE				4		 Vegetative organ - Culm				0				
9064	SG1	OsSG1, Sg1	SHORT GRAIN 1	SHORT GRAIN1, Short grain 1		Sg1, Sg1-D	9	Rice overexpressor shows short grain phenotype. Knock-down line shows long grain phenotype.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os09g0459200	LOC_Os09g28520.1		0		GO:0009742 - brassinosteroid mediated signaling, GO:0008285 - negative regulation of cell proliferation, GO:0009741 - response to brassinosteroid stimulus, GO:0010229 - inflorescence development, GO:0048316 - seed development	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000146 - seed length, TO:0000207 - plant height, TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000326 - leaf color, TO:0000370 - leaf width, TO:0000734 - grain length, TO:0000040 - panicle length	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0007089 - stem elongation stage 
9065	CSLA1	OsCslA1, OsCSLA1	CELLULOSE SYNTHASE LIKE A1		CELLULOSE SYNTHASE LIKE A1		2	BK000080. Q7PC76. LOC_Os02g09930.	 Biochemical character	Os02g0192500	LOC_Os02g09930.2, LOC_Os02g09930.1		0		GO:0000139 - Golgi membrane, GO:0047259 - glucomannan 4-beta-mannosyltransferase activity, GO:0051753 - mannan synthase activity, GO:0016021 - integral to membrane		
9066	CSLC1	OsCslC1, OsCSLC1	CELLULOSE SYNTHASE LIKE C1		CELLULOSE SYNTHASE LIKE C1		1	BK000086. Q8LIY0. LOC_Os01g56130.	 Biochemical character	Os01g0766900	LOC_Os01g56130.1		0		GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
9067	CSLE1	OsCslE1, OsCSLE1	CELLULOSE SYNTHASE LIKE E1		CELLULOSE SYNTHASE LIKE E1		9	AF432500, AF435647, AU068392, AU166543. Q651X7. LOC_Os09g30120.	 Biochemical character	Os09g0478100	LOC_Os09g30120.2, LOC_Os09g30120.1		0		GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane		
9068	CSLF1	OsCslF1, OsCSLF1	CELLULOSE SYNTHASE LIKE F1		CELLULOSE SYNTHASE LIKE F1		7	AF432502. Q6ZF89. LOC_Os07g36700.	 Biochemical character	Os07g0553000	LOC_Os07g36700.1		0		GO:0016021 - integral to membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0000139 - Golgi membrane		
9069	CSLH1	OsCslH1, OsCSLH1	CELLULOSE SYNTHASE LIKE H1		CELLULOSE SYNTHASE LIKE H1		10	BK000084, AF435646, AU085988. Q339N5. LOC_Os10g20090.	 Biochemical character	Os10g0341700	LOC_Os10g20090.3, LOC_Os10g20090.2, LOC_Os10g20090.1		0		GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0000139 - Golgi membrane		
9071	ACO1	OsACO1, ACO	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 1	ACC oxidase 1, ACC oxidase	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 1		9	X85747. Q0J1C1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0451400	LOC_Os09g27820.1		0		GO:0009815 - 1-aminocyclopropane-1-carboxylate oxidase activity, GO:0031418 - L-ascorbic acid binding, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009835 - ripening, GO:0009727 - detection of ethylene stimulus, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0009620 - response to fungus, GO:0009651 - response to salt stress, GO:0009693 - ethylene biosynthetic process, GO:0005507 - copper ion binding		
9072	ACO2	OsACO2	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 2	ACC oxidase 2	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 2		9	AF049888	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0451000	LOC_Os09g27750.1		0		GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009693 - ethylene biosynthetic process, GO:0009727 - detection of ethylene stimulus, GO:0005886 - plasma membrane, GO:0009620 - response to fungus, GO:0005507 - copper ion binding, GO:0009651 - response to salt stress, GO:0005618 - cell wall, GO:0009751 - response to salicylic acid stimulus	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
9073	ACO3	OsACO3	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 3	ACC oxidase 3	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 3		2	AF049889	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0771600	LOC_Os02g53180.3, LOC_Os02g53180.2, LOC_Os02g53180.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0005507 - copper ion binding, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009727 - detection of ethylene stimulus, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0010446 - response to alkalinity, GO:0009693 - ethylene biosynthetic process, GO:0009620 - response to fungus	TO:0000172 - jasmonic acid sensitivity, TO:0000481 - alkali sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root 
9074	ACO4	OsACO4	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 4	ACC oxidase 4	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 4		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0186900	LOC_Os11g08380.1		0		GO:0009753 - response to jasmonic acid stimulus, GO:0010446 - response to alkalinity, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000481 - alkali sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root 
9075	ACO5	OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 5 	ACC oxidase 5, 2-oxoglutarate-dependent dioxygenase 14	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 5		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0149400	LOC_Os05g05680.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root 
9076	SSG6	OsACS6, ACS6	SUBSTANDARD STARCH GRAIN6	substandard starch grain 6, ACC SYNTHASE 6	ACC SYNTHASE 6	ssg6	6		 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances	Os06g0130400	LOC_Os06g03990.1		0		GO:0009693 - ethylene biosynthetic process, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0033097 - amyloplast membrane, GO:0009658 - chloroplast organization	TO:0000397 - grain size, TO:0002715 - chloroplast development trait, TO:0000266 - chalky endosperm, TO:0002658 - starch grain synthesis, TO:0000402 - grain width, TO:0002655 - starch grain size, TO:0000590 - grain weight	PO:0009089 - endosperm , PO:0009005 - root 
9077	DEP2		DENSE AND ERECT PANICLE 2					Affect the elongation of rachis and primary and secondary branches. Novel plant-specific protein.	 Reproductive organ - Panicle, Mode of branching				0				
9078	DEP3	dep3, OspPLAIIIdelta, pPLAIIIdelta	DENSE AND ERECT PANICLE 3	dense and erect panicle 3, Patatin-related phospholipase A III delta		dep3	6	DEP3 gene was predicted to encode a patatin-like phospholipase A2 (PLA2) superfamily domain-containing protein. Control panicle length, grain number per panicle.LOC_Os06g46350. TO:0000800: inflorescence density, TO:0000847: panicle anatomy and morphology trait.	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os06g0677000	LOC_Os06g46350.1		0		GO:0006629 - lipid metabolic process, GO:0016787 - hydrolase activity	TO:0002759 - grain number, TO:0000396 - grain yield, TO:0000050 - inflorescence branching	
9079	EL3		ELICITOR 3				4	D64039	 Biochemical character				0				
9081	GA2OX5	OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32	GIBBERELLIN 2-OXIDASE 5	GA 2-oxidase 5, 2-oxoglutarate-dependent dioxygenase 32	GIBBERELLIN 2-OXIDASE 5		7	BAC10398, AP005187	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0103500	LOC_Os07g01340.1		0		GO:0009685 - gibberellin metabolic process	TO:0006001 - salt tolerance, TO:0002675 - gibberellic acid content, TO:0002693 - gravity response trait	
9082	GA2OX6	OsGA2ox6	GIBBERELLIN 2-OXIDASE 6	GA 2-oxidase 6	GIBBERELLIN 2-OXIDASE 6		4	CAE03751, AL662958	 Biochemical character,  Vegetative organ - Culm	Os04g0522500	LOC_Os04g44150.1		0		GO:0009685 - gibberellin metabolic process	TO:0002675 - gibberellic acid content, TO:0000207 - plant height	
9083	GA2OX7	OsGA2ox7	GIBBERELLIN 2-OXIDASE 7	GA 2-oxidase 7	GIBBERELLIN 2-OXIDASE 7		1		 Biochemical character	Os01g0209700	LOC_Os01g11150.1		0		GO:0009685 - gibberellin metabolic process		
9084	GA2OX8	OsGA2ox8	GIBBERELLIN 2-OXIDASE 8		GIBBERELLIN 2-OXIDASE 8		5	OsGA2ox7 in Tang et al. (2010). Os.51835 in Zhu et al. 2017. TO:0020106: Indole-3-acetic acid content.	 Biochemical character	Os05g0560900	LOC_Os05g48700.1		0		GO:0009685 - gibberellin metabolic process	TO:0002675 - gibberellic acid content	
9085	GA2OX9	OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35	GIBBERELLIN 2-OXIDASE 9	GA 2-oxidase 9, 2-oxoglutarate-dependent dioxygenase 35	GIBBERELLIN 2-OXIDASE 9		2	LOC_Os02g41954. GA2ox7 in Lin et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0630300	LOC_Os02g41954.2, LOC_Os02g41954.1		0		GO:0009414 - response to water deprivation, GO:0046689 - response to mercury ion, GO:0046687 - response to chromate, GO:0009685 - gibberellin metabolic process	TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance	
9087	GA2OX10	OsGA2ox10	GIBBERELLIN 2-OXIDASE 10		GIBBERELLIN 2-OXIDASE 10		5	OSJNBb0016G07(9180-13210), LOC_Os05g11810.1, LOC_Os05g11810.2	 Biochemical character	Os05g0208500/Os05g0208550			0		GO:0009685 - gibberellin metabolic process, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors		
9088	SWEET1A	OsSWEET1a, SWEET1a	SWEET1A		SUGAR TRANSPORTER SWEET1A		1	LOC_Os01g65880. Q8RZQ8.	 Biochemical character	Os01g0881300	LOC_Os01g65880.3, LOC_Os01g65880.2, LOC_Os01g65880.1		0		GO:0009733 - response to auxin stimulus, GO:0008643 - carbohydrate transport, GO:0016021 - integral to membrane, GO:0005887 - integral to plasma membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0034219 - carbohydrate transmembrane transport, GO:0009739 - response to gibberellin stimulus, GO:0010150 - leaf senescence, GO:0009735 - response to cytokinin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9089	SWEET1B	OsSWEET1b, SWEET1b	SWEET1B		SUGAR TRANSPORTER SWEET1B		5	LOC_Os05g35140. Q60EC2.	 Biochemical character	Os05g0426000	LOC_Os05g35140.1		0		GO:0015757 - galactose transport, GO:0005887 - integral to plasma membrane, GO:0009733 - response to auxin stimulus, GO:0008643 - carbohydrate transport, GO:0016021 - integral to membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0034219 - carbohydrate transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0010150 - leaf senescence	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000249 - leaf senescence, TO:0000166 - gibberellic acid sensitivity	PO:0001054 - 4 leaf senescence stage 
9090	SWEET2A	OsSWEET2a, SWEET2a	SWEET2A		SUGAR TRANSPORTER SWEET2A		1	LOC_Os01g36070. Q5JJY5.	 Biochemical character	Os01g0541800	LOC_Os01g36070.1		0		GO:0005887 - integral to plasma membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0051119 - sugar transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0008643 - carbohydrate transport	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9091	SWEET2B	OsSWEET2b, SWEET2b	SWEET2B		SUGAR TRANSPORTER SWEET2B		1	rice orthologue of AtSWEET2. vacuolar glucose transporter. PDB (Protein Data Bank) accession: 5CTG, 5CTH. LOC_Os01g50460. Q5N8J1.	 Biochemical character	Os01g0700100	LOC_Os01g50460.1		0		GO:0034219 - carbohydrate transmembrane transport, GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9092	SWEET3A	OsSWEET3a, SWEET3a	SWEET3A		SUGAR TRANSPORTER SWEET3A		5	LOC_Os05g12320. Q0DJY3.	 Biochemical character	Os05g0214300	LOC_Os05g12320.1		0		GO:0009739 - response to gibberellin stimulus, GO:0008643 - carbohydrate transport, GO:0005887 - integral to plasma membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0034219 - carbohydrate transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity	
9093	GELP12	OsGELP12, OsGELP12a, OsGELP12b, OsGELP12c	GDSL ESTERASE/LIPASE PROTEIN 12	GDSL esterase/lipase protein 12	GDSL ESTERASE/LIPASE PROTEIN 12		1		 Biochemical character	Os01g0223200	LOC_Os01g12320.3, LOC_Os01g12320.2, LOC_Os01g12320.1		0		GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
9094	SWEET4	OsSWEET4	SWEET4		SUGAR TRANSPORTER SWEET4		2	LOC_Os02g19820. Q6K4V2. the rice ortholog of maize ZmSWEET4c. 	 Biochemical character,  Seed - Morphological traits - Endosperm,  Character as QTL - Yield and productivity	Os02g0301100	LOC_Os02g19820.1		0		GO:0009733 - response to auxin stimulus, GO:0009960 - endosperm development, GO:0008645 - hexose transport, GO:0009749 - response to glucose stimulus, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0015758 - glucose transport, GO:0010150 - leaf senescence, GO:0015757 - galactose transport, GO:0051119 - sugar transmembrane transporter activity, GO:0008643 - carbohydrate transport	TO:0000249 - leaf senescence, TO:0002661 - seed maturation, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000100 - shrunken endosperm, TO:0000166 - gibberellic acid sensitivity, TO:0000333 - sugar content	PO:0007633 - endosperm development stage , PO:0025196 - basal endosperm transfer layer , PO:0001054 - 4 leaf senescence stage 
9095	SWEET5	OsSWEET5	SWEET5		SUGAR TRANSPORTER SWEET5		5	LOC_Os05g51090. Q6L568. GO:0060918: auxin transport.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root	Os05g0588500	LOC_Os05g51090.1		0		GO:0010150 - leaf senescence, GO:0009735 - response to cytokinin stimulus, GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0015757 - galactose transport, GO:0016021 - integral to membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0051119 - sugar transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0005887 - integral to plasma membrane, GO:0009734 - auxin mediated signaling pathway, GO:0009739 - response to gibberellin stimulus	TO:0002672 - auxin content, TO:0000333 - sugar content, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000227 - root length, TO:0000249 - leaf senescence, TO:0000207 - plant height	PO:0001054 - 4 leaf senescence stage 
9096	SWEET6A	OsSWEET6a, SWEET6a	SWEET6A		SUGAR TRANSPORTER SWEET6A		1	LOC_Os01g42110. Q8LR09.	 Biochemical character	Os01g0606000	LOC_Os01g42110.1		0		GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0016021 - integral to membrane, GO:0005887 - integral to plasma membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0051119 - sugar transmembrane transporter activity, GO:0008643 - carbohydrate transport, GO:0009733 - response to auxin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
9097	SWEET6B	OsSWEET6b, SWEET6b	SWEET6B		SUGAR TRANSPORTER SWEET6B		1	LOC_Os01g42090. Q8W0K2.	 Biochemical character	Os01g0605700	LOC_Os01g42090.1		0		GO:0034219 - carbohydrate transmembrane transport, GO:0016021 - integral to membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0008643 - carbohydrate transport, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9098	SWEET7A	OsSWEET7a, SWEET7a	SWEET7A		SUGAR TRANSPORTER SWEET7A		9	LOC_Os09g08030. Q0J361.	 Biochemical character	Os09g0254600	LOC_Os09g08030.1		0		GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0034219 - carbohydrate transmembrane transport		
9099	SWEET7B	OsSWEET7b, SWEET7b	SWEET7B		SUGAR TRANSPORTER SWEET7B		9	LOC_Os09g08440. Q0J349.	 Biochemical character	Os09g0258700	LOC_Os09g08440.1		0		GO:0016021 - integral to membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0008643 - carbohydrate transport		
9100	SWEET7C	OsSWEET7c, SWEET7c	SWEET7C		SUGAR TRANSPORTER SWEET7C		12	LOC_Os12g07860. Q2QWX8.	 Biochemical character	Os12g0178500	LOC_Os12g07860.1		0		GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0034219 - carbohydrate transmembrane transport		
9101	SWEET7D	OsSWEET7d, SWEET7d	SWEET7D		SUGAR TRANSPORTER SWEET7D		9	LOC_Os09g08490.	 Biochemical character	Os09g0259200	LOC_Os09g08490.1		0		GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane		
9102	SWEET7E	OsSWEET7e, SWEET7e	SWEET7E		SUGAR TRANSPORTER SWEET7E		9	LOC_Os09g08270. Os09g0256600. A3BWJ9.	 Biochemical character	Os09g0256650	LOC_Os09g08270.1		0		GO:0009739 - response to gibberellin stimulus, GO:0034219 - carbohydrate transmembrane transport, GO:0016021 - integral to membrane, GO:0009735 - response to cytokinin stimulus, GO:0008643 - carbohydrate transport, GO:0005887 - integral to plasma membrane, GO:0051119 - sugar transmembrane transporter activity	TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity	
9103	SWEET12	OsSWEET12	SWEET12		SUGAR TRANSPORTER SWEET12		3	LOC_Os03g22590. Q10LI8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0347500	LOC_Os03g22590.1		0		GO:0009739 - response to gibberellin stimulus, GO:0016021 - integral to membrane, GO:0009733 - response to auxin stimulus, GO:0008643 - carbohydrate transport, GO:0009651 - response to salt stress, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0034219 - carbohydrate transmembrane transport	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	
9104	SWEET13	OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25	SWEET13	Xanthomonas oryzae pv. oryzae resistance 25, Xanthomonas oryzae pv. oryzae resistance-25, Xanthomonas campestris pv. oryzae resistance-25, nodulin MtN3 family protein, nodulin/SWEET13	SUGAR TRANSPORTER SWEET13	xa25	12	Resistant to bacterial blight disease. The present study identified a new dominant gene, Xa25(t), for bacterial blight resistance in Minghui 63 (Chen et al. 2002). LOC_Os12g29220. Q2QR07. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0476200	LOC_Os12g29220.1		0		GO:0005887 - integral to plasma membrane, GO:0042742 - defense response to bacterium, GO:0008643 - carbohydrate transport, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0034219 - carbohydrate transmembrane transport	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
9105	11N3	OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14	11N3	Xanthomonas oryzae pv. oryzae resistance 41	SUGAR TRANSPORTER SWEET14	xa41(t), xa41, sweet14-10, sweet14-11, sweet14-15, sweet14-32, sweet14-36	11	LOC_Os11g31190. Q2R3P9. a second member of the NODULIN3 (N3) gene family. Nodulin-3. GO:0071470. a major bacterial blight susceptibility S gene. The 18-bp deletion in the promoter region of the OsSWEET14 gene represents a new resistance allele xa41(t) (Hutin et al. 2015). 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0508600	LOC_Os11g31190.1		0		GO:0051119 - sugar transmembrane transporter activity, GO:0010150 - leaf senescence, GO:0071215 - cellular response to abscisic acid stimulus, GO:0002237 - response to molecule of bacterial origin, GO:0009751 - response to salicylic acid stimulus, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0008515 - sucrose transmembrane transporter activity, GO:0034219 - carbohydrate transmembrane transport, GO:0015770 - sucrose transport, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000175 - bacterial blight disease resistance	
9106	SWEET15	OsSWEET15	SWEET15		SUGAR TRANSPORTER SWEET15		2	LOC_Os02g30910. Q6K602.	 Biochemical character	Os02g0513100	LOC_Os02g30910.1		0		GO:0008643 - carbohydrate transport, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0010150 - leaf senescence, GO:0016021 - integral to membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0015757 - galactose transport, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9107	SWEET16	OsSWEET16	SWEET16		SUGAR TRANSPORTER SWEET16		3	LOC_Os03g22200. Q10LN5.	 Biochemical character	Os03g0341300	LOC_Os03g22200.2, LOC_Os03g22200.1		0		GO:0051119 - sugar transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0005887 - integral to plasma membrane, GO:0008643 - carbohydrate transport		
9108	YUCCA10	OsYUCCA10, OsYUC10	YUCCA-LIKE GENE 10				1	LOC_Os01g16750. an orthologue of AtYUCCA.	 Biochemical character	Os01g0274100	LOC_Os01g16750.1		0				
9109	YUCCA11	OsYUCCA11, OsYUC11	YUCCA-LIKE GENE 11				12	LOC_Os12g08780. an orthologue of AtYUCCA.	 Biochemical character	Os12g0189500	LOC_Os12g08780.1		0				
9110	YUCCA12	OsYUCCA12, OsYUC12	YUCCA-LIKE GENE 12				2	LOC_Os02g17230. an orthologue of AtYUCCA.	 Biochemical character	Os02g0272200	LOC_Os02g17230.1		0				
9111	YUCCA13	OsYUCCA13, OsYUC13	YUCCA-LIKE GENE 13				11	LOC_Os11g10140. an orthologue of AtYUCCA.	 Biochemical character	Os11g0207700	LOC_Os11g10140.1		0				
9112	YUCCA14	OsYUCCA14, OsYUC14	YUCCA-LIKE GENE 14				11	LOC_Os11g10170. an orthologue of AtYUCCA.	 Biochemical character	Os11g0207900	LOC_Os11g10170.1		0				
9113	SPO11-4	OsSPO11-4, OsSPO11D	TOPOISOMERASE 6 SUBUNIT A	sporulation protein11-4	TOPOISOMERASE 6 SUBUNIT A		12	GU177866(Japonica). AB219540.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0622500	LOC_Os12g42760.1		0		GO:0005694 - chromosome, GO:0003916 - DNA topoisomerase activity, GO:0006265 - DNA topological change, GO:0003918 - DNA topoisomerase (ATP-hydrolyzing) activity, GO:0005524 - ATP binding		
9114	SPO11-5	OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35	TOPOISOMERASE 6 SUBUNIT A-LIKE PROTEIN	ubiquitin-specific processing protease 13, Ubiquitin-specific protease 35	TOPOISOMERASE 6 SUBUNIT A		11	GU170364(Indica), AY154916/AY154917/AY154918/AY154919(Japonica). GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP35 in Ma et al. 2019.	 Biochemical character	Os11g0545300	LOC_Os11g34270.1		0		GO:0003677 - DNA binding, GO:0016889 - endodeoxyribonuclease activity, producing 3'-phosphomonoesters, GO:0000737 - DNA catabolic process, endonucleolytic, GO:0005694 - chromosome, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		
9115	ZEP1	OsZEP1	TANSVERSE FILAMENT		SYNAPTONEMAL COMPLEX PROTEIN	zep1-1, zep1-2, zep1-3, zep1-4, zep1	4	GU479042, In the mutants of zep1, the SCs do not assemble normally, but COs are always formed between homologous chromosomes. a transverse filament protein of synaptonemal complex (SC).	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0452500	LOC_Os04g37960.1		0		GO:0000795 - synaptonemal complex, GO:0007129 - synapsis, GO:0007131 - reciprocal meiotic recombination		
9116	RMC1	MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3	RICE MEIOTIC CROSSOVER 1	ZMM protein, ROCK-N-ROLLERS	DNA HELICASE	Osmer3, mer3	2	FJ008126	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0617500	LOC_Os02g40450.1		0		GO:0008026 - ATP-dependent helicase activity, GO:0051026 - chiasma formation, GO:0005524 - ATP binding, GO:0007126 - meiosis, GO:0003676 - nucleic acid binding, GO:0007131 - reciprocal meiotic recombination		
9117	RPA1A	OsRPA70a, OsRPA1a, RPA1a	REPLICATION PROTEIN A 1A	Replication protein A 70kDa subunit a, RPA70kDa subunit a	REPLICATION PROTEIN A 1A	osrpa1a	2	AB042415, AU068958. Q6YZ49.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os02g0776800	LOC_Os02g53680.1				GO:0007062 - sister chromatid cohesion, GO:0009640 - photomorphogenesis, GO:0043247 - telomere maintenance in response to DNA damage, GO:0009555 - pollen development, GO:0045132 - meiotic chromosome segregation, GO:0009560 - embryo sac egg cell differentiation, GO:0042138 - meiotic DNA double-strand break formation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0046872 - metal ion binding, GO:0048232 - male gamete generation, GO:0032204 - regulation of telomere maintenance, GO:0019915 - lipid storage, GO:0009933 - meristem structural organization, GO:0010228 - vegetative to reproductive phase transition, GO:0010182 - sugar mediated signaling, GO:0050826 - response to freezing, GO:0016567 - protein ubiquitination, GO:0010162 - seed dormancy, GO:0009909 - regulation of flower development, GO:0016444 - somatic cell DNA recombination, GO:0051026 - chiasma formation, GO:0010332 - response to gamma radiation, GO:0009845 - seed germination, GO:0009793 - embryonic development ending in seed dormancy, GO:0000790 - nuclear chromatin, GO:0000724 - double-strand break repair via homologous recombination, GO:0009220 - pyrimidine ribonucleotide biosynthetic process, GO:0007141 - male meiosis I, GO:0007140 - male meiosis, GO:0003677 - DNA binding, GO:0006260 - DNA replication, GO:0006281 - DNA repair, GO:0007131 - reciprocal meiotic recombination, GO:0006312 - mitotic recombination, GO:0043687 - post-translational protein modification		
9118	RAD51A2	OsRad51A2, OsRAD51	DNA REPAIR PROTEIN RAD51A2 		DNA REPAIR PROTEIN RAD51A2 	rad51a2	12	AB080264(Japonica), DQ890514(Indica). GO:1904975: response to bleomycin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0497300	LOC_Os12g31370.1		0		GO:0005524 - ATP binding, GO:0006281 - DNA repair, GO:0006302 - double-strand break repair, GO:0008094 - DNA-dependent ATPase activity		
9119	SDS	OsSDS, Orysa;SDS	SOLO DANCERS		N-TYPE CYCLIN	Ossds, Ossds-1, Ossds-2, Ossds-3	3	Q10PQ9. OsSDS is critical for the localization of OsMSH5, OsMER3 and OsZIP4 (Wu et al. 2015). LOC_Os03g12414.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0225200	LOC_Os03g12414.1, LOC_Os03g12414.2		0		GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0000706 - meiotic DNA double-strand break processing, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0007126 - meiosis, GO:0051301 - cell division		
9121	ORC1	OsORC1	ORIGIN RECOGNITION COMPLEX 1				6	AB037135 (Japonica). LOC_Os06g08790.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0187000	LOC_Os06g08790.1		0		GO:0045787 - positive regulation of cell cycle, GO:0010332 - response to gamma radiation		
9122	ORC2	OsORC2	ORIGIN RECOGNITION COMPLEX 2	Origin recognition complex subunit 2, ORC subunit 2			3	AB104466(Japonica). AF140487.	 Biochemical character	Os03g0184700	LOC_Os03g08640.2, LOC_Os03g08640.1		0		GO:0005664 - nuclear origin of replication recognition complex, GO:0006267 - pre-replicative complex assembly, GO:0006260 - DNA replication, GO:0030466 - chromatin silencing at silent mating-type cassette, GO:0006270 - DNA replication initiation, GO:0000808 - origin recognition complex, GO:0003688 - DNA replication origin binding, GO:0005634 - nucleus, GO:0045787 - positive regulation of cell cycle, GO:0005656 - pre-replicative complex		
9123	ORC3	OsORC3	ORIGIN RECOGNITION COMPLEX 3				10	AB100408 (Japonica). Q0IY07. LOC_Os10g26280.	 Biochemical character	Os10g0402200 	LOC_Os10g26280.1		0		GO:0048527 - lateral root development, GO:0005664 - nuclear origin of replication recognition complex, GO:0009744 - response to sucrose stimulus, GO:0000724 - double-strand break repair via homologous recombination, GO:0006261 - DNA-dependent DNA replication, GO:0000911 - cytokinesis by cell plate formation, GO:0003677 - DNA binding		
9124	ORC4	OsORC4	ORIGIN RECOGNITION COMPLEX 4	origin recognition complex subunit 4			1	AB110983(Japonica). Q5N8Q4. LOC_Os01g49010. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0683400	LOC_Os01g49010.2, LOC_Os01g49010.1		0		GO:0009744 - response to sucrose stimulus, GO:0006270 - DNA replication initiation, GO:0003688 - DNA replication origin binding, GO:0005524 - ATP binding, GO:0007126 - meiosis, GO:0005664 - nuclear origin of replication recognition complex		
9125	ORC5	OsORC5	ORIGIN RECOGNITION COMPLEX 5				3	AB099524(Japonica)	 Biochemical character	Os03g0759500	LOC_Os03g55200.1		0				
9126	SAUR1	OsSAUR1	SMALL AUXIN-UP RNA 1	Small auxin-up RNA 1	SAUR PROTEIN 1		1	Auxin-responsive SAUR gene family member.		Os01g0155100	LOC_Os01g06230.1		0		GO:0009734 - auxin mediated signaling pathway, GO:0005516 - calmodulin binding		
9127	SAUR2	OsSAUR2	SMALL AUXIN-UP RNA 2	Small auxin-up RNA 2	SAUR PROTEIN 2		1	Auxin-responsive SAUR gene family member. CF955968. LOC_Os01g56240.		Os01g0768333	LOC_Os01g56240.1		0		GO:0009733 - response to auxin stimulus		
9128	SAUR3	OsSAUR3	SMALL AUXIN-UP RNA 3	Small auxin-up RNA 3	SAUR PROTEIN 3		1	Auxin-responsive SAUR gene family member.		Os01g0924966	LOC_Os01g70050.1		0				
9129	SAUR4	OsSAUR4	SMALL AUXIN-UP RNA 4	Small auxin-up RNA 4	SAUR PROTEIN 4		2	Auxin-responsive SAUR gene family member. 		Os02g0143300	LOC_Os02g05050.1		0				
9130	SAUR5	OsSAUR5	SMALL AUXIN-UP RNA 5	Small auxin-up RNA 5	SAUR PROTEIN 5		2	Auxin-responsive SAUR gene family member. CA764032.		Os02g0143400	LOC_Os02g05060.1		0				
9131	SAUR6	OsSAUR6	SMALL AUXIN-UP RNA 6	Small auxin-up RNA 6	SAUR PROTEIN 6		2	Auxin-responsive SAUR gene family member. CB649992.		Os02g0167600	LOC_Os02g07110.1		0				
9132	SAUR7	OsSAUR7	SMALL AUXIN-UP RNA 7	Small auxin-up RNA 7	SAUR PROTEIN 7		2	Auxin-responsive SAUR gene family member. LOC_Os02g20320. Os02g0306200 (in Rap2 (build4)).		Os02g0305950	LOC_Os02g20320.1	GR:0020089	0		GO:0009733 - response to auxin stimulus		
9133	SAUR8	OsSAUR8	SMALL AUXIN-UP RNA 8	Small auxin-up RNA 8	SAUR PROTEIN 8		2	LOC_Os02g24700. Auxin-responsive SAUR gene family member. AU33213.	 Tolerance and resistance - Stress tolerance	Os02g0445100	LOC_Os02g24700.1		0		GO:0009629 - response to gravity	TO:0002693 - gravity response trait	
9134	SAUR9	OsSAUR9	SMALL AUXIN-UP RNA 9	Small auxin-up RNA 9	SAUR PROTEIN 9		2	Auxin-responsive SAUR gene family member. CA759440.		Os02g0445600	LOC_Os02g24740.1		0				
9135	SAUR10	OsSAUR10	SMALL AUXIN-UP RNA 10	Small auxin-up RNA 10	SAUR PROTEIN 10		2	Auxin-responsive SAUR gene family member. AU184046, AU101615.		Os02g0512000	LOC_Os02g30810.1		0				
9136	SAUR11	OsSAUR11	SMALL AUXIN-UP RNA 11	Small auxin-up RNA 11	SAUR PROTEIN 11		2	Auxin-responsive SAUR gene family member. CA758724, CF962956, CX115060, CF987505, AU070771, AU083499, CF991337, CK037178. LOC_Os02g42990.		Os02g0643800	LOC_Os02g42990.1		0		GO:0009733 - response to auxin stimulus		
9137	SAUR12	OsSAUR12	SMALL AUXIN-UP RNA 12	Small auxin-up RNA 12	SAUR PROTEIN 12		2	Auxin-responsive SAUR gene family member. CB668237. LOC_Os02g52990.		Os02g0769100 	LOC_Os02g52990.1	GR:0020094	0				
9138	SAUR13	OsSAUR13	SMALL AUXIN-UP RNA 13	Small auxin-up RNA 13	SAUR PROTEIN 13		3	Auxin-responsive SAUR gene family member. 		Os03g0290100	LOC_Os03g18050.1		0				
9139	SAUR14	OsSAUR14	SMALL AUXIN-UP RNA 14	Small auxin-up RNA 14	SAUR PROTEIN 14		3	Auxin-responsive SAUR gene family member. 		Os03g0660200	LOC_Os03g45800.1		0				
9140	SAUR15	OsSAUR15	SMALL AUXIN-UP RNA 15	Small auxin-up RNA 15	SAUR PROTEIN 15		3	Auxin-responsive SAUR gene family member. 		Os03g0660300	LOC_Os03g45830.1		0				
9141	SAUR16	OsSAUR16	SMALL AUXIN-UP RNA 16	Small auxin-up RNA 16	SAUR PROTEIN 16		3	Auxin-responsive SAUR gene family member.		Os03g0660400	LOC_Os03g45850.1		0				
9142	SAUR17	OsSAUR17	SMALL AUXIN-UP RNA 17	Small auxin-up RNA 17	SAUR PROTEIN 17		3	Auxin-responsive SAUR gene family member. 		Os03g0660500	LOC_Os03g45860.1		0				
9143	SAUR18	OsSAUR18	SMALL AUXIN-UP RNA 18	Small auxin-up RNA 18	SAUR PROTEIN 18		4	Auxin-responsive SAUR gene family member. 		Os04g0517900 	LOC_Os04g43740.1		0				
9144	SAUR19	OsSAUR19	SMALL AUXIN-UP RNA 19	Small auxin-up RNA 19	SAUR PROTEIN 19		4	LOC_Os04g45370. Auxin-responsive SAUR gene family member. CF992080, AU163467, AU070854.	 Tolerance and resistance - Stress tolerance	Os04g0537100	LOC_Os04g45370.1		0		GO:0009629 - response to gravity	TO:0002693 - gravity response trait	
9145	SAUR20	OsSAUR20	SMALL AUXIN-UP RNA 20	Small auxin-up RNA 20	SAUR PROTEIN 20		4	Auxin-responsive SAUR gene family member. 		Os04g0608300	LOC_Os04g51890.1		0				
9146	SAUR21	OsSAUR21	SMALL AUXIN-UP RNA 21	Small auxin-up RNA 21	SAUR PROTEIN 21		4	Auxin-responsive SAUR gene family member. CX116178, AU101241, AU101242, AU164440, AU164434.		Os04g0617050	LOC_Os04g52670.1		0				
9147	SAUR22	OsSAUR22	SMALL AUXIN-UP RNA 22	Small auxin-up RNA 22	SAUR PROTEIN 22		4	Auxin-responsive SAUR gene family member. 		Os04g0662200	LOC_Os04g56680.1		0				
9148	SAUR23	OsSAUR23	SMALL AUXIN-UP RNA 23	Small auxin-up RNA 23	SAUR PROTEIN 23		4	Auxin-responsive SAUR gene family member.	 Tolerance and resistance - Stress tolerance	Os04g0662400	LOC_Os04g56690.1		0		GO:0009629 - response to gravity, GO:0009733 - response to auxin stimulus	TO:0002693 - gravity response trait	
9149	SAUR24	OsSAUR24	SMALL AUXIN-UP RNA 24	Small auxin-up RNA 24	SAUR PROTEIN 24		6	Auxin-responsive SAUR gene family member. CX111504, CB678751.		Os06g0137400	LOC_Os06g04590.1		0				
9150	SAUR25	OsSAUR25	SMALL AUXIN-UP RNA 25	Small auxin-up RNA 25	SAUR PROTEIN 25		6	Auxin-responsive SAUR gene family member. CB649992, CB649993.		Os06g0671150	LOC_Os06g45950.1		0				
9151	SAUR26	OsSAUR26	SMALL AUXIN-UP RNA 26	Small auxin-up RNA 26	SAUR PROTEIN 26		6	Auxin-responsive SAUR gene family member. 		Os06g0671600	LOC_Os06g45970.1		0				
9152	SAUR27	OsSAUR27	SMALL AUXIN-UP RNA 27	Small auxin-up RNA 27	SAUR PROTEIN 27		6	Auxin-responsive SAUR gene family member. 		Os06g0701900	LOC_Os06g48850.1		0				
9153	SAUR28	OsSAUR28	SMALL AUXIN-UP RNA 28	Small auxin-up RNA 28	SAUR PROTEIN 28		6	Auxin-responsive SAUR gene family member. 		Os06g0702000	LOC_Os06g48860.1		0				
9154	SAUR29	OsSAUR29	SMALL AUXIN-UP RNA 29	Small auxin-up RNA 29	SAUR PROTEIN 29		6	Auxin-responsive SAUR gene family member. AU070300, AU070299.		Os06g0714300	LOC_Os06g50040.1		0				
9155	SAUR30	OsSAUR30	SMALL AUXIN-UP RNA 30	Small auxin-up RNA 30	SAUR PROTEIN 30		7	Auxin-responsive SAUR gene family member. 		Os07g0475700	LOC_Os07g29310.1		0				
9156	SAUR31	OsSAUR31	SMALL AUXIN-UP RNA 31	Small auxin-up RNA 31	SAUR PROTEIN 31		8	Auxin-responsive SAUR gene family member. AU083558, D48386.		Os08g0118500	LOC_Os08g02520.1		0				
9157	SAUR32	OsSAUR32	SMALL AUXIN-UP RNA 32	Small auxin-up RNA 32	SAUR PROTEIN 32		8	Auxin-responsive SAUR gene family member. 		Os08g0118800	LOC_Os08g02530.1		0				
9158	SAUR33	OsSAUR33	SMALL AUXIN-UP RNA 33	Small auxin-up RNA 33	SAUR PROTEIN 33		8	Auxin-responsive SAUR gene family member. CX102113, CK008354, CF993077, D41303, AA752879, CK009417, CF960474.		Os08g0452500	LOC_Os08g35110.1		0				
9159	SAUR34	OsSAUR34	SMALL AUXIN-UP RNA 34	Small auxin-up RNA 34	SAUR PROTEIN 34		8	Auxin-responsive SAUR gene family member. LOC_Os08g42198.		Os08g0534950 	LOC_Os08g42198.1		0				
9160	SAUR35	OsSAUR35	SMALL AUXIN-UP RNA 35	Small auxin-up RNA 35	SAUR PROTEIN 35		8	Auxin-responsive SAUR gene family member. AU162587. LOC_Os08g42277.		Os08g0534300			0				
9161	SAUR36	OsSAUR36	SMALL AUXIN-UP RNA 36	Small auxin-up RNA 36	SAUR PROTEIN 36		8	Auxin-responsive SAUR gene family member. CX114771.		Os08g0550700	LOC_Os08g43700.1		0				
9162	SAUR37	OsSAUR37	SMALL AUXIN-UP RNA 37	Small auxin-up RNA 37	SAUR PROTEIN 37		9	Auxin-responsive SAUR gene family member. CK057681, CK009831.		Os09g0437100 	LOC_Os09g26590.1		0				
9163	SAUR38	OsSAUR38	SMALL AUXIN-UP RNA 38	Small auxin-up RNA 38	SAUR PROTEIN 38		9	Auxin-responsive SAUR gene family member. 		Os09g0437400	LOC_Os09g26610.1		0				
9164	SAUR39	OsSAUR39	SMALL AUXIN-UP RNA 39	Small auxin-up RNA 39	SAUR PROTEIN 39		9	Auxin-responsive SAUR gene family member. an early auxin response gene. CF298825, CF313445, CF319833, CF318268, CK076098, CB667154, CK075864, CB667155, CF319834, CF300374, CF300373. Os09g0545280. LOC_Os09g37330. B7F8P5. GO:2000012: regulation of auxin polar transport.		Os09g0545300	LOC_Os09g37330.1		0		GO:0005737 - cytoplasm, GO:0009734 - auxin mediated signaling pathway, GO:0046621 - negative regulation of organ growth, GO:0007275 - multicellular organismal development	TO:0002672 - auxin content, TO:0000163 - auxin sensitivity	
9165	SAUR40	OsSAUR40	SMALL AUXIN-UP RNA 40	Small auxin-up RNA 40	SAUR PROTEIN 40		9	Auxin-responsive SAUR gene family member. CA755157.		Os09g0545400 	LOC_Os09g37344.1		0				
9166	SAUR41	OsSAUR41	SMALL AUXIN-UP RNA 41	Small auxin-up RNA 41	SAUR PROTEIN 41		9	Auxin-responsive SAUR gene family member.  		Os09g0545700	LOC_Os09g37369.1		0				
9167	SAUR42	OsSAUR42	SMALL AUXIN-UP RNA 42	Small auxin-up RNA 42	SAUR PROTEIN 42		9	Auxin-responsive SAUR gene family member. LOC_Os09g37380. Os09g0545900(obsolete in IRGSP1).					0				
9168	SAUR43	OsSAUR43	SMALL AUXIN-UP RNA 43	Small auxin-up RNA 43	SAUR PROTEIN 43		9	Auxin-responsive SAUR gene family member. OSJNBa0038K02.5, pseudogene.					0				
9169	SAUR44	OsSAUR44	SMALL AUXIN-UP RNA 44	Small auxin-up RNA 44	SAUR PROTEIN 44		9	Auxin-responsive SAUR gene family member. CA759673. LOC_Os09g37394. Os09g0546000 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os09g37394		0				
9170	SAUR45	OsSAUR45	SMALL AUXIN-UP RNA 45	Small auxin-up RNA 45	SAUR PROTEIN 45		9	LOC_Os09g37400. Auxin-responsive SAUR gene family member. D41140. GO:0060918: auxin transport. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root	Os09g0546100	LOC_Os09g37400.1		0		GO:0009738 - abscisic acid mediated signaling, GO:0009926 - auxin polar transport, GO:0009851 - auxin biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0080022 - primary root development, GO:0048367 - shoot development, GO:0009733 - response to auxin stimulus, GO:0005737 - cytoplasm, GO:0048366 - leaf development, GO:0009734 - auxin mediated signaling pathway, GO:0009736 - cytokinin mediated signaling	TO:0000163 - auxin sensitivity, TO:0002672 - auxin content, TO:0000207 - plant height, TO:0000227 - root length, TO:0001006 - adventitious root number, TO:0000370 - leaf width, TO:0000180 - spikelet fertility, TO:0000656 - root development trait, TO:0000655 - leaf development trait, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000576 - stem length, TO:0006036 - stem elongation, TO:0000654 - shoot development trait	PO:0001052 - 2 leaf expansion stage , PO:0001031 - 4 root elongation stage , PO:0007089 - stem elongation stage 
9171	SAUR46	OsSAUR46	SMALL AUXIN-UP RNA 46	Small auxin-up RNA 46	SAUR PROTEIN 46		9	Auxin-responsive SAUR gene family member. CB096280.		Os09g0546200	LOC_Os09g37410.1		0				
9172	SAUR47	OsSAUR47	SMALL AUXIN-UP RNA 47	Small auxin-up RNA 47	SAUR PROTEIN 47		9	Auxin-responsive SAUR gene family member. CK059911. OSJNBa0038K02.9 pseudogene.					0				
9173	SAUR48	OsSAUR48	SMALL AUXIN-UP RNA 48	Small auxin-up RNA 48	SAUR PROTEIN 48		9	Auxin-responsive SAUR gene family member. LOC_Os09g37430. Os09g0546300 (in Rap1 (build3), Rap2 (build4)). 			LOC_Os09g37430		0				
9174	SAUR49	OsSAUR49	SMALL AUXIN-UP RNA 49	Small auxin-up RNA 49	SAUR PROTEIN 49		9	Auxin-responsive SAUR gene family member. BX899832. LOC_Os09g37440.Os09g0546500 (in Rap1 (build3), Rap2 (build4)).			LOC_Os09g37440		0				
9175	SAUR50	OsSAUR50	SMALL AUXIN-UP RNA 50	Small auxin-up RNA 50	SAUR PROTEIN 50		9	Auxin-responsive SAUR gene family member. OSJNBa0038K02.12, pseudogene.					0				
9176	SAUR51	OsSAUR51	SMALL AUXIN-UP RNA 51	Small auxin-up RNA 51	SAUR PROTEIN 51		9	Auxin-responsive SAUR gene family member. CX111160.		Os09g0546700	LOC_Os09g37460.1		0				
9177	SAUR52	OsSAUR52	SMALL AUXIN-UP RNA 52	Small auxin-up RNA 52	SAUR PROTEIN 52		9	Auxin-responsive SAUR gene family member. CX108618. Os09g0546800 in RAP2 and RAP3 (build4 and build5). LOC_Os09g37470.			LOC_Os09g37470	GR:0020134	0				
9178	SAUR53	OsSAUR53	SMALL AUXIN-UP RNA 53	Small auxin-up RNA 53	SAUR PROTEIN 53		9	Auxin-responsive SAUR gene family member. C25314, AU172957.		Os09g0546900	LOC_Os09g37480.1		0				
9179	SAUR54	OsSAUR54	SMALL AUXIN-UP RNA 54	Small auxin-up RNA 54	SAUR PROTEIN 54		9	Auxin-responsive SAUR gene family member. CA762058.		Os09g0547000	LOC_Os09g37490.1		0				
9180	SAUR55	OsSAUR55	SMALL AUXIN-UP RNA 55	Small auxin-up RNA 55	SAUR PROTEIN 55		9	Auxin-responsive SAUR gene family member. CV725163.		Os09g0547100	LOC_Os09g37500.1		0				
9181	SAUR56	OsSAUR56	SMALL AUXIN-UP RNA 56	Small auxin-up RNA 56	SAUR PROTEIN 56		10	Auxin-responsive SAUR gene family member. CX103416.		Os10g0510500	LOC_Os10g36703.1		0				
9182	SAUR57	OsSAUR57	SMALL AUXIN-UP RNA 57	Small auxin-up RNA 57	SAUR PROTEIN 57		12	LOC_Os12g41600. Auxin-responsive SAUR gene family member. CF965411, AU164662, D49128.	 Tolerance and resistance - Stress tolerance	Os12g0609600	LOC_Os12g41600.2, LOC_Os12g41600.1		0		GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
9183	SAUR58	OsSAUR58	SMALL AUXIN-UP RNA 58	Small auxin-up RNA 58	SAUR PROTEIN 58		12	Auxin-responsive SAUR gene family member. BE230777.		Os12g0626200	LOC_Os12g43110.1		0				
9184	MLO_	OsMLO4, OsMLO1, MLO1	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O1, powdery-MiLdew-resistance gene O4, Mildew resistance Locus O-1	POWDERY-MILDEW-RESISTANCE PROTEIN O_		10	AC073166. OsMLO1 in Nguyen et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0541000	LOC_Os10g39520.1		0		GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0008219 - cell death, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity, TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009066 - anther 
9185	MLO_	OsMLO5, OsMLO2	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O5, powdery-MiLdew-resistance gene O2, Mildew resistance Locus O-2	POWDERY-MILDEW-RESISTANCE PROTEIN O_		1	AP003346. OsMLO2 in Nguyen et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0888600	LOC_Os01g66510.1		0		GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0008219 - cell death, GO:0016021 - integral to membrane	TO:0000074 - blast disease, TO:0000259 - heat tolerance	PO:0009046 - flower 
9186	MLO_	OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O2, powdery-MiLdew-resistance gene O3, MLO homologue, Mildew resistance Locus O-3	POWDERY-MILDEW-RESISTANCE PROTEIN O_		3	AC099739, AP000615, AF384030. AF388195. OsMLO3 in Nguyen et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0129100	LOC_Os03g03700.2, LOC_Os03g03700.1		0		GO:0009408 - response to heat, GO:0008219 - cell death, GO:0016021 - integral to membrane, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0009646 - response to absence of light, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000075 - light sensitivity, TO:0000259 - heat tolerance, TO:0000074 - blast disease	PO:0025034 - leaf , PO:0009006 - shoot system 
9187	MLO_	OsMLO4, MLO4	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O4, Mildew resistance Locus O-4	POWDERY-MILDEW-RESISTANCE PROTEIN O_		4	AL606456.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0680800	LOC_Os04g58420.1		0		GO:0008219 - cell death, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0016021 - integral to membrane	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0000025 - root tip 
9188	MLO_	OsMLO5, MLO5	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O5, Mildew resistance Locus O-5	POWDERY-MILDEW-RESISTANCE PROTEIN O_		4	AL731606.	 Tolerance and resistance - Disease resistance	Os04g0444400	LOC_Os04g36680.1		0		GO:0008219 - cell death, GO:0016021 - integral to membrane		
9189	MLO_	OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O6, powdery-MiLdew-resistance gene O1, Mildew resistance Locus O-6	POWDERY-MILDEW-RESISTANCE PROTEIN O_		6	AP003518, Z95353, AF490386. Q0DC45, A2YD22. OsMLO6 in Nguyen et al. 2016.	 Tolerance and resistance - Disease resistance	Os06g0486300	LOC_Os06g29110.1		0		GO:0005516 - calmodulin binding, GO:0006952 - defense response, GO:0008219 - cell death, GO:0009607 - response to biotic stimulus, GO:0016021 - integral to membrane	TO:0000074 - blast disease	PO:0009066 - anther 
9190	MLO_	OsMLO7, MLO7	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O7, Mildew resistance Locus O-7	POWDERY-MILDEW-RESISTANCE PROTEIN O_		6	AP003616.	 Tolerance and resistance - Disease resistance	Os06g0610500	LOC_Os06g40790.1		0		GO:0008219 - cell death, GO:0016021 - integral to membrane		
9191	MLO_	OsMLO8, MLO8	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O8, Mildew resistance Locus O-8	POWDERY-MILDEW-RESISTANCE PROTEIN O_		2	AP004191.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0197200	LOC_Os02g10350.1		0		GO:0009416 - response to light stimulus, GO:0016021 - integral to membrane, GO:0008219 - cell death, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000075 - light sensitivity	PO:0025034 - leaf , PO:0009066 - anther , PO:0025281 - pollen 
9192	MLO_	OsMLO9, MLO9	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O9, Mildew resistance Locus O-9	POWDERY-MILDEW-RESISTANCE PROTEIN O_		5	AC134933.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0418100	LOC_Os05g34550.3, LOC_Os05g34550.2, LOC_Os05g34550.1		0		GO:0016021 - integral to membrane, GO:0008219 - cell death, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0050832 - defense response to fungus	TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0009066 - anther 
9193	MLO_	OsMLO10, MLO10	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O10, Mildew resistance Locus O-10	POWDERY-MILDEW-RESISTANCE PROTEIN O_		2	AP004144.	 Tolerance and resistance - Disease resistance	Os02g0562600	LOC_Os02g35490.1		0		GO:0016021 - integral to membrane, GO:0008219 - cell death		PO:0009005 - root 
9194	MLO_	OsMLO11, MLO11	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O11, Mildew resistance Locus O-11	POWDERY-MILDEW-RESISTANCE PROTEIN O_		11	AC135794.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0181400	LOC_Os11g07912.1		0		GO:0008219 - cell death, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0050832 - defense response to fungus	TO:0000303 - cold tolerance, TO:0000074 - blast disease	PO:0009046 - flower , PO:0009066 - anther 
9195	MLO_	OsMLO12, MLO12	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O12, Mildew resistance Locus O-12	POWDERY-MILDEW-RESISTANCE PROTEIN O_		5	AC135431.	 Tolerance and resistance - Disease resistance	Os05g0183300 	LOC_Os05g09050.1		0		GO:0016021 - integral to membrane, GO:0008219 - cell death		PO:0025281 - pollen , PO:0009066 - anther 
9196	ORC6	OsORC6	ORIGIN RECOGNITION COMPLEX 6				7		 Biochemical character	Os07g0628600	LOC_Os07g43540.1		0				
9197	MCM7	OsMCM7	MINI-CHROMOSOME MAINTENANCE PROTEIN 7		MINI-CHROMOSOME MAINTENANCE PROTEIN 7		12	LOC_Os12g37400, Replicative helicase.	 Biochemical character	Os12g0560700	LOC_Os12g37400.2, LOC_Os12g37400.1		0				
9198	MCM6	OsMCM6	MINI-CHROMOSOME MAINTENANCE PROTEIN 6		MINI-CHROMOSOME MAINTENANCE PROTEIN 6		5	LOC_Os05g14590. Replicative helicase.	 Biochemical character	Os05g0235800	LOC_Os05g14590.1		0				
9199	MCM5	OsMCM5	MINI-CHROMOSOME MAINTENANCE PROTEIN 5		MINI-CHROMOSOME MAINTENANCE PROTEIN 5		2	LOC_Os02g55410. Q6KAJ4. Replicative helicase.	 Biochemical character	Os02g0797400	LOC_Os02g55410.2, LOC_Os02g55410.1		0		GO:0003682 - chromatin binding, GO:0003688 - DNA replication origin binding, GO:0005524 - ATP binding, GO:0003678 - DNA helicase activity, GO:0000347 - THO complex, GO:0005737 - cytoplasm, GO:0006270 - DNA replication initiation, GO:0007049 - cell cycle, GO:0042555 - MCM complex		
9200	MCM4	OsMCM4	MINI-CHROMOSOME MAINTENANCE PROTEIN 4		MINI-CHROMOSOME MAINTENANCE PROTEIN 4		1	LOC_Os01g36390. Q5JKB0. Replicative helicase.	 Biochemical character	Os01g0544450	LOC_Os01g36390.1		0		GO:0007049 - cell cycle, GO:0046872 - metal ion binding, GO:0003678 - DNA helicase activity, GO:0042555 - MCM complex, GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0000347 - THO complex, GO:0005829 - cytosol, GO:0006270 - DNA replication initiation		
9201	MCM3	OsMCM3	MINI-CHROMOSOME MAINTENANCE PROTEIN 3		MINI-CHROMOSOME MAINTENANCE PROTEIN 3		5	LOC_Os05g39850. Replicative helicase.	 Biochemical character	Os05g0476200	LOC_Os05g39850.1		0				
9202	MCM2	OsMCM2	MINI-CHROMOSOME MAINTENANCE PROTEIN 2		MINI-CHROMOSOME MAINTENANCE PROTEIN 2		11	LOC_Os11g29380. Replicative helicase.	 Biochemical character	Os11g0484300	LOC_Os11g29380.1		0				
9203	CDC6	OsCDC6	CELL DIVISION CONTROL 6				1	LOC_Os01g63710. Q5N897.	 Biochemical character	Os01g0856000	LOC_Os01g63710.3, LOC_Os01g63710.2, LOC_Os01g63710.1		0		GO:0033314 - mitotic cell cycle DNA replication checkpoint, GO:0003688 - DNA replication origin binding, GO:0005634 - nucleus, GO:0006270 - DNA replication initiation, GO:0051301 - cell division, GO:0000278 - mitotic cell cycle		
9204	CDC45-1	CDC45, OsCDC45, CDC45A	CELL DIVISION  CONTROL 45-1		CELL DIVISION  CONTROL 45-1		12	LOC_Os12g03130. DNA replication initiation protein. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0124700	LOC_Os12g03130.1		0		GO:0006270 - DNA replication initiation, GO:0007126 - meiosis		
9205	CDC45-2	OsCDC45, CDC45	CELL DIVISION  CONTROL 45-2		CELL DIVISION  CONTROL 45-2		11	LOC_Os11g03430	 Biochemical character	Os11g0128400	LOC_Os11g03430.1		0				
9206	WRKY107	OsWRKY107	WRKY GENE 107		TRANSCRIPTION FACTOR WRKY		1	LOC_Os01g09080. AU071032, AU091465, AU065466, AU082723. WRKY63 in Qiu et al. 2004. WRKY26 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY2 in Wu et al. (2005). WRKY97 (WRKY-97) in Ross et al. (2007) and Yang et al. 2016. WRKY101 and WRKY107 in Choi et al. 2017.	 Tolerance and resistance - Disease resistance	Os01g0185900	LOC_Os01g09080.1		0		GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9207	WRKY116	OsWRKY116	WRKY GENE 116		TRANSCRIPTION FACTOR WRKY		1	WRKY105 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY18 in Wu et al. (2005), Ross et al. (2007) and Sun et al. 2014. LOC_Os01g60520.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0820700	LOC_Os01g60520.1		0		GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding	TO:0006001 - salt tolerance	
9208	WRKY108	OsWRKY108	WRKY GENE 108		TRANSCRIPTION FACTOR WRKY		1	LOC_Os01g60600. BF889473. WRKY41 in Zhang and Wang (2005) and Berri et al. (2009). WRKY20 in Wu et al. (2005) and Sun et al. 2014. WRKY86 in Ross et al. (2007). WRKY98 and WRKY108 in Choi et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0821300	LOC_Os01g60600.1		0		GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
9209	WRKY119	OsWRKY119	WRKY GENE 119		TRANSCRIPTION FACTOR WRKY		1	LOC_Os01g62510. WRKY23 in Wu et al. (2005). Os01g0842700 (in Rap3 (build5)).	 Tolerance and resistance - Disease resistance		LOC_Os01g62510		0		GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9210	WRKY79	OsWRKY79, WRKY-79	WRKY GENE 79		TRANSCRIPTION FACTOR WRKY		3	LOC_Os03g21710. WRKY19 in Zhang and Want (2005) and Berri et al. (2009). WRKY32 in Wu et al. (2005) and Sun et al. 2014. WRKY44 in Ross et al. (2007). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0335200	LOC_Os03g21710.1		0		GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	
9212	WRKY80	OsWRKY80	WRKY GENE 80		TRANSCRIPTION FACTOR WRKY		3	LOC_Os03g63810. WRKY81 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY30 in Wu et al. (2005). WRKY88 in Ross et al. (2007). GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os03g0855100	LOC_Os03g63810.1		0		GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0009723 - response to ethylene stimulus, GO:0050832 - defense response to fungus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	
9213	WRKY109	OsWRKY109	WRKY GENE 109		TRANSCRIPTION FACTOR WRKY		5	LOC_Os05g03900. WRKY52 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY45 in Wu et al. (2005) in Sun et al. 2014. WRKY89 in Ross et al. (2007). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0129800	LOC_Os05g03900.2, LOC_Os05g03900.1		0		GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
9214	WRKY82	OsWRKY82	WRKY GENE 82		TRANSCRIPTION FACTOR WRKY 82		5	LOC_Os05g14370. WRKY45 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY48 in Wu et al.(2005) and Sun et al. 2014. WRKY90 in Ross et al. (2007). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0233100	LOC_Os05g14370.1		0		GO:0003700 - transcription factor activity, GO:0009408 - response to heat, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	
9215	WRKY84	OsWRKY84	WRKY GENE 84		TRANSCRIPTION FACTOR WRKY		5	LOC_Os05g40070. WRKY94 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY54 in Wu et al. (2005). WRKY91 in Ross et al. (2007).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0478700	LOC_Os05g40070.1		0		GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009725 - response to hormone stimulus, GO:0042742 - defense response to bacterium	TO:0000401 - plant growth hormone sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000188 - drought sensitivity	
9216	WRKY83	OsWRKY83	WRKY GENE 83		TRANSCRIPTION FACTOR WRKY 83		5	LOC_Os05g50680.	 Tolerance and resistance - Disease resistance	Os05g0583600	LOC_Os05g50680.1		0		GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
9217	WRKY111	OsWRKY111	WRKY GENE 111		TRANSCRIPTION FACTOR WRKY		5	WRKY60 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY62 in Wu et al. (2005) and Sun et al. 2014. WRKY92 in Ross et al. (2007). LOC_Os05g50700. Os05g0584000 (in Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os05g50700		0		GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
9218	WRKY113	OsWRKY113	WRKY GENE 113		TRANSCRIPTION FACTOR WRKY		6	LOC_Os06g06360. WRKY64 in Zhang and Wang (2005), Wu et al. (2005), Berri et al. (2009) and Sun et al. 2014. WRKY93 in Ross et al. (2007). WRKY85 and WRKY113 in Choi et al 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0158100	LOC_Os06g06360.1		0		GO:0006952 - defense response, GO:0010039 - response to iron ion, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0009863 - salicylic acid mediated signaling pathway, GO:0043565 - sequence-specific DNA binding	TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
9219	WRKY123	OsWRKY123	WRKY GENE 123		TRANSCRIPTION FACTOR WRKY		7	LOC_Os07g17230. WRKY71 in Wu et al. (2005). WRKY94 in Ross et al. (2007). RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Tolerance and resistance - Disease resistance	Os07g0273700	LOC_Os07g17230.1		0		GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
9220	WRKY115	OsWRKY115	WRKY GENE 115		TRANSCRIPTION FACTOR WRKY		7	LOC_Os07g27670. WRKY87 in Zhang and Wang (2005), in Berri et al. (2009). WRKY69 in Wu et al. (2005) and Sun et al. 2014. WRKY95 in Ross et al. (2007). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0460900	LOC_Os07g27670.1		0		GO:0006952 - defense response, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000188 - drought sensitivity, TO:0000303 - cold tolerance	
9221	WRKY88	OsWRKY88	WRKY GENE 88		TRANSCRIPTION FACTOR WRKY		7	LOC_Os07g40570. AY341847. WRKY103 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY68 in Wu et al. (2005). WRKY96 in Ross et al. (2007).	 Tolerance and resistance - Disease resistance	Os07g0596900	LOC_Os07g40570.1		0		GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0003700 - transcription factor activity, GO:0009863 - salicylic acid mediated signaling pathway, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
9222	WRKY105	OsWRKY105	WRKY GENE 105		TRANSCRIPTION FACTOR WRKY		8	LOC_Os08g09800. WRKY15 in Zhang and Wang (2005) and in Berri et al. (2009).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0198000	LOC_Os08g09800.1		0		GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus	TO:0000401 - plant growth hormone sensitivity, TO:0000188 - drought sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
9223	WRKY106	OsWRKY106	WRKY GENE 106		TRANSCRIPTION FACTOR WRKY		8	LOC_Os08g09810. WRKY16 in Zhang and Wang (2005) and in Berri et al. (2009).	 Tolerance and resistance - Disease resistance	Os08g0198100	LOC_Os08g09810.1		0		GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
9224	WRKY117	OsWRKY117	WRKY GENE 117		TRANSCRIPTION FACTOR WRKY		8	LOC_Os08g09840. WRKY109 in Zhang and Wang (2005). WRKY113 in Berri et al. (2009).	 Tolerance and resistance - Disease resistance	Os08g0198400	LOC_Os08g09840.1		0		GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
9225	WRKY118	OsWRKY118	WRKY GENE 118		TRANSCRIPTION FACTOR WRKY		8	LOC_Os08g09900. WRKY111 in Zhang ans Wang (2005). WRKY115 in Berri et al. (2009).	 Tolerance and resistance - Disease resistance	Os08g0198900	LOC_Os08g09900.1		0		GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
9226	WRKY112	OsWRKY112	WRKY GENE 112		TRANSCRIPTION FACTOR WRKY		9	LOC_Os09g09630. WRKY62 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY77 in Wu et al. (2005). WRKY98 in Ross et al. (2007). Os09g0269300 (not found in RapDB, Ncbi and UniProt).	 Tolerance and resistance - Disease resistance		LOC_Os09g09630		0		GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
9227	WRKY125	OsWRKY125	WRKY GENE 125		TRANSCRIPTION FACTOR WRKY		11	WRKY59 in Ross et al. (2007)	 Tolerance and resistance - Disease resistance	Os11g0684100	LOC_Os11g45750.2, LOC_Os11g45750.1		0		GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response		
9228	WRKY114	OsWRKY114	WRKY GENE 114		TRANSCRIPTION FACTOR WRKY114		12	LOC_Os12g02400. Os12g0116100 (in Rap3 (build5)). WRKY77 in Zhang and Wang (2005) and  in Berri et al. (2009). WRKY100 in Wu et al. (2005). WRKY81 in Ross et al. (2007).	 Tolerance and resistance - Disease resistance				0		GO:0043565 - sequence-specific DNA binding, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
9229	WRKY97	OsWRKY97	WRKY GENE 97		TRANSCRIPTION FACTOR WRKY		12	WRKY99 in Wu et al. (2005).  WRKY46B in Ross et al. (2007).	 Tolerance and resistance - Disease resistance	Os12g0116400	LOC_Os12g02420.2, LOC_Os12g02420.1		0		GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
9230	WRKY95	OsWRKY95	WRKY GENE 95		TRANSCRIPTION FACTOR WRKY 95		12	LOC_Os12g02440. WRKY101 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY98 in Wu et al. (2005). WRKY56 in Ross et al. (2007). WRKY100 in Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0116600	LOC_Os12g02440.4, LOC_Os12g02440.3, LOC_Os12g02440.2, LOC_Os12g02440.1		0		GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009408 - response to heat	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
9231	WRKY96	OsWRKY96	WRKY GENE 96		TRANSCRIPTION FACTOR WRKY		12	LOC_Os12g32250. WRKY83 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY85 in Ryu et al (2006) and Ross et al. (2007). WRKY101 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0507300	LOC_Os12g32250.1		0		GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000188 - drought sensitivity, TO:0000175 - bacterial blight disease resistance	
9234	WRKY110	OsWRKY110	WRKY GENE 110		TRANSCRIPTION FACTOR WRKY		7	WRKY55 in Zhang and Wang (2005) and in Berri et al. (2009).	 Tolerance and resistance - Disease resistance				0		GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
9235	WRKY120	OsWRKY120	WRKY GENE 120		TRANSCRIPTION FACTOR WRKY			WRKY33 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance				0		GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
9236	WRKY124	OsWRKY124	WRKY GENE 124		TRANSCRIPTION FACTOR WRKY			WRKY85 in Wu et al. (2005). WRKY99 in Ross et al. (2007).	 Tolerance and resistance - Disease resistance				0		GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding		
9237	WRKY78	OsWRKY78	WRKY GENE 78		TRANSCRIPTION FACTOR WRKY		1	AP001072_110726~118434 in Qiu et al. 2004. NM_188117 (obsolete data) in Qiu et al. 2004 and Choi et al. 2017.	 Tolerance and resistance - Disease resistance				0		GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
9238	WRKY86	OsWRKY86, OsaLeg5, Leg5	WRKY GENE 86	legumain 5	TRANSCRIPTION FACTOR WRKY 86		6	WRKY86 (AP001129_68622~70535 bp) in Qiu et al. 2004. a vegetative-related protease.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0105100			0		GO:0000323 - lytic vacuole, GO:0042742 - defense response to bacterium, GO:0004197 - cysteine-type endopeptidase activity, GO:0006508 - proteolysis	TO:0000175 - bacterial blight disease resistance	
9241	WRKY98	OsWRKY98	WRKY GENE 98		TRANSCRIPTION FACTOR WRKY		1	WRKY38 (NM_190356  (obsolete data), P0703B11.18 (obsolete data), P0485B12.10 (probably inactive due to including stop codon(s) in CDS), AP003348) in Qiu et al. (2004).	 Tolerance and resistance - Disease resistance				0		GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response		
9242	WRKY99	OsWRKY99	WRKY GENE 99		TRANSCRIPTION FACTOR WRKY		1	WRKY44 (NM_190346 (obsolete data), P0703B11.8  (obsolete data, AP003302 (chromosome 1)) in Qiu et al. (2004).	 Tolerance and resistance - Disease resistance				0		GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
9243	WRKY121	OsWRKY121	WRKY GENE 121		TRANSCRIPTION FACTOR WRKY		3	LOC_Os03g53050. WRKY35 in Wu et al. (2005). WRKY87 in Ross et al. (2007). WRKY109 in Berri et al. (2009). HQ858818.	 Tolerance and resistance - Disease resistance	Os03g0741400	LOC_Os03g53050.1		0		GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9244	BET1	BET1, ONAC081, ONAC81, NAC81	BORON EXCESS TOLERANT 1	BORON EXCESS TOLERANT1, NAC domain-containing protein 081, NAC domain-containing protein 81	NAC DOMAIN-CONTAINING PROTEIN 81		4	AB630330(Wataribune), AB630331(Nipponbare). LOC_Os04g40140.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0477300	LOC_Os04g40140.3, LOC_Os04g40140.2, LOC_Os04g40140.1		0		GO:0051607 - defense response to virus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress	TO:0000018 - boron sensitivity, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0006001 - salt tolerance, TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance	
9246	TPKA	TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a	TWO-PORE K+ CHANNEL A	two-pore K+ channel a	TWO-PORE K+ CHANNEL A		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0752300	LOC_Os03g54100.2, LOC_Os03g54100.1		0		GO:0009651 - response to salt stress, GO:0030007 - cellular potassium ion homeostasis, GO:0016021 - integral to membrane, GO:0009705 - plant-type vacuole membrane, GO:0031004 - potassium ion-transporting ATPase complex, GO:0005242 - inward rectifier potassium channel activity	TO:0006001 - salt tolerance	
9247	TPKB	TPKb, OsTPKb	TWO-PORE K+ CHANNEL B	two-pore K+ channel b	TWO-PORE K+ CHANNEL B		7		 Biochemical character	Os07g0108800	LOC_Os07g01810.1		0		GO:0009705 - plant-type vacuole membrane, GO:0005242 - inward rectifier potassium channel activity, GO:0030007 - cellular potassium ion homeostasis, GO:0000272 - polysaccharide catabolic process, GO:0016021 - integral to membrane		
9248	PTC1	OsMS1, tms9-1, OsPTC1, MS1, TMS9-1	PERSISTENT TAPETAL CELL 1	PERSISTENT TAPETAL CELL1, MALE STERILITY1 homolog, thermo-sensitive genic male sterility 9-1, MALE STERILITY 1	_	ptc1, osms1	9	ortholog of Arabidopsis MS1. AP005308, GU597363, AC005308. Q67V61.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0449000	LOC_Os09g27620.1		0		GO:0010143 - cutin biosynthetic process, GO:0048653 - anther development, GO:0005634 - nucleus, GO:0010584 - pollen exine formation, GO:0048658 - tapetal layer development, GO:0043068 - positive regulation of programmed cell death, GO:0009555 - pollen development, GO:0046872 - metal ion binding, GO:0008270 - zinc ion binding	TO:0000067 - genic male sterility-thermo sensitive, TO:0000437 - male sterility, TO:0000187 - anther color, TO:0000531 - anther length	
9250	API5	API5, Os API5, OsAPI5	APOPTOSIS INHIBITOR 5	APOPTOSIS INHIBITOR5		api5, api5-1, api5-2	2	API5 encodes a putative homolog of antiapoptosis protein Api5 in animal. Q6Z6S1.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0313400	LOC_Os02g20930.1		0		GO:0009555 - pollen development, GO:0005634 - nucleus, GO:0043067 - regulation of programmed cell death		
9251	AIP1	AIP1, Os AIP1, OsAIP1, OsRH56, OsBAT1, UAP56, OsUAP56, OsBAT1/UAP56	API5-INTERACTING PROTEIN 1	API5-INTERACTING PROTEIN1, RNA helicase 56, HLA-B associated transcript 1, spliceosome RNA helicase UAP56	API5-INTERACTING PROTEIN 1		1	Q0JM17. LOC_Os01g36890. GQ478227. DEAD-box RNA helicase protein. Oryza sativa homologue of HLA-B associated transcript 1 (BAT1) protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0549700	LOC_Os01g36890.2		0		GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0003724 - RNA helicase activity, GO:0032508 - DNA duplex unwinding, GO:0016887 - ATPase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0051028 - mRNA transport, GO:0008380 - RNA splicing, GO:0008026 - ATP-dependent helicase activity, GO:0006397 - mRNA processing	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity	
9252	AIP2	AIP2, Os AIP2, OsAIP2, OsRH15	API5-INTERACTING PROTEIN 2	API5-INTERACTING PROTEIN2, RNA helicase 15	API5-INTERACTING PROTEIN 2		1	Q5JK84. LOC_Os01g36920. DEAD-box RNA helicase protein.	 Biochemical character	Os01g0550000	LOC_Os01g36920.2		0		GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity		
9253	BUI1	BUI1, FH5, FH5/BUI1, RMD, OsFH5, FH5/RMD	BENT UPPERMOST INTERNODE 1	BENT UPPERMOST INTERNODE1, class II formin FH5, Rice Morphology Determinant, formin homology 5, Type II Formin FH5, forming family protein 5, FH2 protein 5, FH2 domain protein 5		bui1, rmd, rmd-1, rmd-2	7	Q84ZL0, AF234296, HQ123580. actin-organizing protein. LOC_Os07g40510/LOC_Os07g40520. GO:0060918: auxin transport. Extensin family protein.		Os07g0596300	LOC_Os07g40520.1, LOC_Os07g40510.1		0		GO:0001578 - microtubule bundle formation, GO:0009507 - chloroplast, GO:0000902 - cell morphogenesis, GO:0009733 - response to auxin stimulus, GO:0051017 - actin filament bundle formation, GO:0051016 - barbed-end actin filament capping, GO:0008017 - microtubule binding, GO:0051125 - regulation of actin nucleation, GO:0000226 - microtubule cytoskeleton organization, GO:0001558 - regulation of cell growth, GO:0060627 - regulation of vesicle-mediated transport, GO:0003779 - actin binding, GO:0009826 - unidimensional cell growth, GO:0030041 - actin filament polymerization, GO:0004721 - phosphoprotein phosphatase activity, GO:0030036 - actin cytoskeleton organization	TO:0000268 - inflorescence shape, TO:0000484 - seed shape, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000262 - panicle shape	
9254	SAP11	OsDOG, OsSAP11, DOG	STRESS ASSOCIATED PROTEIN GENE 11	Oryza sativa dwarf rice with overexpression of gibberellin-induced gene, dwarf rice with overexpression of gibberellin-induced gene, stress associated protein 11	STRESS ASSOCIATED PROTEIN 11		8	gibberellin-induced A20/AN1 zinc-finger protein. Q84PD8. LOC_Os08g39450.	 Vegetative organ - Culm,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0504700 	LOC_Os08g39450.1		0		GO:0050832 - defense response to fungus, GO:0003677 - DNA binding, GO:0006950 - response to stress, GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0008270 - zinc ion binding, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0006001 - salt tolerance	
9255	LTN1	LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35	LEAF TIP NECROSIS 1	Leaf tip necrosis1, Phosphate Overaccumulator2, PHOSPHATE2, Ubiquitin-conjugating enzyme 35	_	ospho2, ltn1	5	AC104709, AU032431. putative ortholog of Arabidopsis PHO2. rice ortholog of AtPHO2. The alternative isoform PHO2.2 overlapped with LOC_Os05g48400 (Secco et al. 2013). TO:0020102: phosphate content. TO:0006055: selenium concentration. LOC_Os05g48390.	 Tolerance and resistance - Stress tolerance	Os05g0557700 	LOC_Os05g48400.1, LOC_Os05g48390.1		0		GO:0009651 - response to salt stress, GO:0016881 - acid-amino acid ligase activity, GO:0042594 - response to starvation, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0016036 - cellular response to phosphate starvation	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000102 - phosphorus sensitivity, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence 
9256	MIR399F	OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f	MICRORNA399F	microRNA399f, osa-miRNA399f	_		6	miRBASE accession: MI0001058. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)	 Tolerance and resistance - Stress tolerance,  Other				0		GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016036 - cellular response to phosphate starvation, GO:0010106 - cellular response to iron ion starvation, GO:0051365 - cellular response to potassium ion starvation		
9257	MIR399J	OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j	MICRORNA399J	microRNA399j, osa-miRNA399j	_		4	miRBASE accession: MI0001062. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) TO:0020102: phosphate content. GO:0072732: cellular response to calcium ion starvation.LM379302	 Tolerance and resistance - Stress tolerance,  Other				0		GO:0051365 - cellular response to potassium ion starvation, GO:0010106 - cellular response to iron ion starvation, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0016036 - cellular response to phosphate starvation		
9258	PAP10	OsPAP10	PURPLE ACID PHOSPHATASE 10	purple acid phosphatase 10	PURPLE ACID PHOSPHATASE 10				 Biochemical character				0				
9260	_	bphi008a, BpHi008A, OsRALF-22, OsRALF22, RALF-22, RALF22	_	brown planthopper induced008a, Brown planthopper induced 008a, Rapid alkalization factor 22	_		6	AY256682. a protein homologous to wheat Wir1. LOC_Os06g29730.	 Tolerance and resistance - Insect resistance	Os06g0493100	LOC_Os06g29730.1		0		GO:0009723 - response to ethylene stimulus, GO:0002213 - defense response to insect	TO:0000261 - insect damage resistance, TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance	
9261	_	OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2	_	Mitogen-activated protein kinase13, BTH-Induced MAP Kinase 2, benzothiadiazole-induced MAP kinase 2	_		2	AY524973, AF194416. Q0E459, A2X0M1. OsMPK13 in Nanda et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os02g0135200 	LOC_Os02g04230.1, LOC_Os02g04230.3, LOC_Os02g04230.2		0		GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0009814 - defense response, incompatible interaction, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding, GO:0009723 - response to ethylene stimulus, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus	TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease	
9262	_	OsMPK17, OsMPK21-1	_	Mitogen-activated protein kinase 17, MAP kinase 21-1	_		5	AAT39148. Q6L5F7.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os05g0576800	LOC_Os05g50120.1		0		GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0009723 - response to ethylene stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0005886 - plasma membrane, GO:0000165 - MAPKKK cascade, GO:0005829 - cytosol, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0002213 - defense response to insect, GO:0004707 - MAP kinase activity	TO:0000074 - blast disease, TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance	
9263	BZIP50	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S	b-ZIP TRANSCRIPTION FACTOR 50	b-ZIP transcription factor 60, b-ZIP transcription factor 50, b-ZIP transcription factor 74	b-ZIP TRANSCRIPTION FACTOR 50		6	a rice orthologue of AtbZIP60. As a response to stress, the ER stress sensor IRE1 transduces signals through the unconventional splicing of OsbZIP50 mRNA, which causes a frameshift producing a nuclear localization signal in the protein designated OsbZIP50-S, which regulates the expression of many ER stress-responsive genes.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0622700	LOC_Os06g41770.1		0		GO:0009408 - response to heat, GO:0006986 - response to unfolded protein, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0046983 - protein dimerization activity, GO:0043565 - sequence-specific DNA binding	TO:0000432 - temperature response trait	
9264	_	SDRP	_	similar to DNA-directed RNA polymerase	_		3			Os03g0102200	LOC_Os03g01230.2, LOC_Os03g01230.1		0		GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity, GO:0008270 - zinc ion binding		
9266	ART1	ART1, STAR3	ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 1	AL RESISTANCE TRANSCRIPTION FACTOR1, Al resistance transcription factor 1, Aluminum rhizotoxicity 1, ALUMINUM RESISTANCE TRANSCRIPTION FACTOR1	C2H2 ZINC FINGER PROTEIN	art1, art1-1, art1-2	12	AB379846(Koshihikari). Q2QX40. ART1 regulates the expression of 31 genes in the downstream. a C2H2-type zinc finger transcription factor for Al tolerance.	 Tolerance and resistance - Stress tolerance	Os12g0170400	LOC_Os12g07280.1		0		GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0010044 - response to aluminum ion, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0043620 - regulation of transcription in response to stress, GO:0006351 - transcription, DNA-dependent	TO:0000354 - aluminum sensitivity	PO:0009005 - root 
9267	STAR1	OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1	SENSITIVE TO ALUMINIUM RHIZOTOXICITY 1	SENSITIVE TO AL RHIZOTOXICITY1, Efflux transporter of nicotianamine 2, ABC transporter superfamily ABCI subgroup member 12	ABC TRANSPORTER I12		6	LOC_Os06g48060. Q0D9V6. STAR1 is one of the downstream genes regulated by ART1. AB253626(Koshihikari). STAR1 encodes a nucleotide binding domain of ABC(ATP binding cassette) transporter. STAR2 encodes a transmembrane domain of ABT transporter. GO:1904880: response to hydrogen sulfide.	 Tolerance and resistance - Stress tolerance	Os06g0695800	LOC_Os06g48060.1		0		GO:0016887 - ATPase activity, GO:0005515 - protein binding, GO:0005460 - UDP-glucose transmembrane transporter activity, GO:0012506 - vesicle membrane, GO:0010044 - response to aluminum ion, GO:0005524 - ATP binding	TO:0000354 - aluminum sensitivity	
9268	STAR2	OsSTAR2, OsSATR2	SENSITIVE TO ALUMINIUM RHIZOTOXICITY 2	SENSITIVE TO AL RHIZOTOXICITY2, sensitive to Al rhizotoxicity2	ABC TRANSPORTER		5	Q5W7C1. AB379845(Nipponbare). the rice ortholog of the Arabidopsis Al sensitive mutant als3. STAR2 is one of the downstream genes regulated by ART1. STAR1 encodes a nucleotide binding domain of ABC(ATP binding cassette) transporter. STAR2 encodes a transmembrane domain of ABT transporter. GO:1904880: response to hydrogen sulfide.	 Tolerance and resistance - Stress tolerance	Os05g0119000	LOC_Os05g02750.1		0		GO:0005515 - protein binding, GO:0012506 - vesicle membrane, GO:0016021 - integral to membrane, GO:0005460 - UDP-glucose transmembrane transporter activity, GO:0010044 - response to aluminum ion		
9269	_	OsNOA1	_	NO-associated protein 1	_				 Tolerance and resistance - Stress tolerance				0				
9270	_	OsNR	_	nitrate reductase	_				 Biochemical character				0				
9272	_	CysR14	_	cysteine-rich 14kDa prolamin	_			indicated as 13a (larger component) in Ogawa et al. 1987.	 Seed - Physiological traits - Storage substances				0				
9273	_	CysR16	_	cysteine-rich 16kDa prolamin	_				 Seed - Physiological traits - Storage substances				0				
9275	DREB1E	OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1E	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1E, ethylene response factor 30, APETALA2/ethylene-responsive element binding protein 160	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1E		4	LOC_Os04g48350. Q8H273. AY114110. AY785896. AY258283.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0572400	LOC_Os04g48350.1		0		GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009631 - cold acclimation, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity		
9276	DHN1	LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23	DEHYDRIN 1	Dehydration-stress inducible protein 1, Dehydration Stress-inducible Protein 1, late embryogenesis abundant protein 23, SK3-type dehydrin	_		2	AY786415. EF444534. AB011367. LOC_Os02g44870. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0669100 	LOC_Os02g44870.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin, GO:0042743 - hydrogen peroxide metabolic process, GO:0009415 - response to water, GO:0006950 - response to stress, GO:0009414 - response to water deprivation	TO:0000295 - chlorophyll-b content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0000175 - bacterial blight disease resistance	
9277	SODA1	SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1	SUPEROXIDE DISMUTASE A1	Superoxide dismutase A1, mitochondrial Mn-SOD, Mitochondrial Manganese Superoxide Dismutase, Manganese Superoxide Dismutase, Manganese-Superoxide Dismutase	SUPEROXIDE DISMUTASE A1		5	LOC_Os05g25850. Q43008. L19436. L34038. AB026725. D29734.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0323900 	LOC_Os05g25850.2, LOC_Os05g25850.1		0		GO:0004784 - superoxide dismutase activity, GO:0042742 - defense response to bacterium, GO:0005759 - mitochondrial matrix, GO:0006801 - superoxide metabolic process	TO:0000350 - cms-hl type, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance	
9278	SODB	SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2	SUPEROXIDE DISMUTASE B	Superoxide dismutase B, Fe-dependent superoxide dismutase, iron superoxide dismutase, iron-superoxide dismutase, Fe-dependent SOD 1.2	SUPEROXIDE DISMUTASE B		6	LOC_Os06g05110. AY770495. AY770496 (promoter sequence), AY871310 (alternative spliced).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0143000 	LOC_Os06g05110.3, LOC_Os06g05110.1		0		GO:0006801 - superoxide metabolic process, GO:0004784 - superoxide dismutase activity, GO:0046872 - metal ion binding, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
9279	LHY	LHY, Os-LHY, OsLHY	LATE ELONGATED HYPOCOTYL	LATE ELONGATED HYPOCOTYL				circadian clock-related gene.					0				
9280	MTI4C	MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c	METALLOTHIONEIN I-4C	metallochionein 1-4b, Metallothionein 1d, type 1 metallothionein d	METALLOTHIONEIN I-4C		12	LOC_Os12g38300. type 1 small Cys-rich and metal binding protein, metallochionein. Q2QNC3. OsMT1c in Wong et al. 2004. OsMT-I-4c in Zhou et al. 2006. OsMT1d in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0571100	LOC_Os12g38300.1		0		GO:0005507 - copper ion binding, GO:0000302 - response to reactive oxygen species	TO:0002657 - oxidative stress	PO:0009005 - root 
9281	_	OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1	_	PROTEIN DISULFIDE ISOMERASE-LIKE 1;1, PROTEIN DISULFIDE ISOMERASE-LIKE 1-1, protein disulfide-isomerase, PDI-like protein 1-1, Protein Disulfide Isomerase Like 1-1	_	esp2, pdil1;1, PDIL1-1Delta	11	Q53LQ0. AB039278. AB373950. D15804. an ortholog of human PDI. chaperone. PO:0030123: panicle inflorescence. GO:2000014: regulation of endosperm development. TO:0000942: aleurone layer morphology trait.	 Biochemical character,  Seed - Physiological traits,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os11g0199200	LOC_Os11g09280.2, LOC_Os11g09280.1		0		GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009960 - endosperm development, GO:0055122 - response to very low light intensity stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0046689 - response to mercury ion, GO:0003756 - protein disulfide isomerase activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0034975 - protein folding in endoplasmic reticulum, GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process, GO:0005788 - endoplasmic reticulum lumen	TO:0000382 - 1000-seed weight, TO:0000104 - floury endosperm, TO:0000266 - chalky endosperm, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000333 - sugar content, TO:0000598 - protein content, TO:0000460 - light intensity sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0009010 - seed , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
9282	_	PDIL2;3, PDIL2-3, PDIL 2-3, OsPDIL2-3, PDIL 2-3	_	PROTEIN DISULFIDE ISOMERASE-LIKE 2;3, protein disulfide-isomerase 2-3, protein disulfide isomerase 2-3, PDI-like protein 2-3	_		9	an ortholog of human P5. Q67UF5.	 Biochemical character	Os09g0451500	LOC_Os09g27830.3, LOC_Os09g27830.2, LOC_Os09g27830.1		0		GO:0003756 - protein disulfide isomerase activity, GO:0006662 - glycerol ether metabolic process, GO:0005576 - extracellular region, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
9284	_	PDIL1;4, PDIL1-4, PDIL 1-4, OsPDIL1-4	_	PROTEIN DISULFIDE ISOMERASE-LIKE 1;4, protein disulfide-isomerase 1-4, protein disulfide isomerase 1-4, PDI-like protein 1-4	_		2	a paralog of PDIL1;1. Q67IX6. chaperone.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0100100	LOC_Os02g01010.1		0		GO:0034975 - protein folding in endoplasmic reticulum, GO:0005788 - endoplasmic reticulum lumen, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0003756 - protein disulfide isomerase activity		
9285	_	CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9	_	cysteine-poor 13kDa prolamin, Cys-poor 13-kDa prolamin, Prolamin 9	_		5	indicated as 13b (smaller component) in Ogawa et al. 1987. Q0DJ45. D73383. AY427573 (promoter). Os05g0329100, LOC_Os05g26377, LOC_Os05g26386 (Yoon et al. 2012). LOC_Os05g26377, Os05g0329100 (Saito et al. 2012). PROLM9 in Yang et al. 2018.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os05g0329100	LOC_Os05g26386.1, LOC_Os05g26377.1		0		GO:0033095 - aleurone grain, GO:0005783 - endoplasmic reticulum, GO:0045735 - nutrient reservoir activity, GO:0042735 - protein body, GO:0005773 - vacuole		PO:0009089 - endosperm 
9286	_	ERO1, Ero1	_	ER membrane-localized sulfhydryl oxidase Ero1, ER membrane-localized sulfhydryl oxidase 1	_		3	CB654132.	 Biochemical character	Os03g0733800	LOC_Os03g52340.2, LOC_Os03g52340.1		0		GO:0006467 - protein thiol-disulfide exchange, GO:0005789 - endoplasmic reticulum membrane, GO:0050660 - FAD binding, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor		
9287	_	BiP	_	immunoglobulin heavy chain binding protein	_								0				
9288	_	RA17, RAP, RAG1, OsEnS-97	_	16-kDa rice allergen, 16 kDa albumin, endosperm-specific gene 97	_		7	ABC domain containing storage protein. Q01883. a major allergenic protein. X66257. D11433. LOC_Os07g11360.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os07g0214100	LOC_Os07g11360.1		0		GO:0009651 - response to salt stress, GO:0005615 - extracellular space, GO:0004867 - serine-type endopeptidase inhibitor activity	TO:0006001 - salt tolerance	
9289	_	PFL	_	Protodermal Factor Like	_		6	EU267976. AP003682.3, P0427B07.25.	 unclassified	Os06g0553200	LOC_Os06g35970.2, LOC_Os06g35970.1		0				
9290	_	FtsZ1, FtsZ, OsFtsZ1, OsFtsZ	_	plastid division protein FtsZ1	_		4	plastid division protein	 Seed - Morphological traits - Endosperm	Os04g0665400	LOC_Os04g56970.2, LOC_Os04g56970.1		0		GO:0007017 - microtubule-based process, GO:0051258 - protein polymerization, GO:0005874 - microtubule, GO:0005525 - GTP binding, GO:0003924 - GTPase activity		
9291	_	FtsZ2-1	_	plastid division protein FtsZ2-1	_		3	plastid division protein	 Seed - Morphological traits - Endosperm	Os03g0646100	LOC_Os03g44420.1		0		GO:0043234 - protein complex, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0051301 - cell division, GO:0051258 - protein polymerization		
9292	_	ARC5, OsARC5, Os ARC5	_	ACCUMULATION AND REPLICATION OF CHLOROPLASTS5	_	arc5	12	plastid division protein. dynamin super family member.	 Seed - Morphological traits - Endosperm	Os12g0178700	LOC_Os12g07880.1		0		GO:0003924 - GTPase activity, GO:0005525 - GTP binding		
9293	_	OsSDIR1, SDIR1	_	SALT-AND DROUGHT-INDUCED RING FINGER 1	_	sdir1, sdir1-1	3	LOC_Os03g16570. ABF95226.1. ortholog of Arabidopsis SDIR1. E3 ubiquitin ligase.	 Tolerance and resistance - Stress tolerance	Os03g0272300	LOC_Os03g16570.3, LOC_Os03g16570.2, LOC_Os03g16570.1		0		GO:0008270 - zinc ion binding, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
9294	BZIP46	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46	b-ZIP TRANSCRIPTION FACTOR 46	ABI5-like1, bZIP transcription factor 46, AREB/ABF-family transcription factor OsAREB8, AREB/ABF-family protein 8, ABA-responsive element binding factor 2	b-ZIP TRANSCRIPTION FACTOR 46	abl1	6	basic region/leucine zipper motif transcription factor. GU552783. LOC_Os06g10880. GO:2000070: regulation of response to water deprivation. OsbZIP46CA1: a truncated and constitutively active form of OsbZIP46 (Chang et al. 2017).	 Tolerance and resistance - Stress tolerance,  Other	Os06g0211200	LOC_Os06g10880.3, LOC_Os06g10880.2, LOC_Os06g10880.1		0		GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0046983 - protein dimerization activity, GO:0009414 - response to water deprivation, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding	TO:0000432 - temperature response trait, TO:0000429 - salt sensitivity, TO:0000188 - drought sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
9295	IRT1	OsIRT1	IRON-REGULATED TRANSPORTER 1	IRON-REGULATED TRANSPORTER1	IRON-REGULATED TRANSPORTER 1		3	Fe2+ transprter. Q75HB1. AB070226, D49213. iron regulated metal transporter. TO:0006049: iron concentration. TO:0006053: zinc concentration. GO:1990641: response to iron ion starvation. GO:0035864: response to potassium ion.	 Tolerance and resistance - Stress tolerance	Os03g0667500 	LOC_Os03g46470.1		0		GO:0051592 - response to calcium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006826 - iron ion transport, GO:0015691 - cadmium ion transport, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0046687 - response to chromate, GO:0010106 - cellular response to iron ion starvation	TO:0000034 - chromium sensitivity, TO:0000224 - iron sensitivity	
9296	JAR1	OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5	JASMONYL-L-ISOLEUCINE SYNTHASE 1	jasmonyl-L-isoleucine synthase 1, JASMONATE RESISTANT 1, GRETCHEN HAGEN 3.5	JASMONYL-L-ISOLEUCINE SYNTHASE 1	osjar1, osjar1-1, osjar1-2, osjar1-3, osgh3-5	5	Q6I581.	 Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0586200 	LOC_Os05g50890.3, LOC_Os05g50890.2, LOC_Os05g50890.1		0		GO:0009651 - response to salt stress, GO:0005773 - vacuole, GO:0009507 - chloroplast, GO:0009585 - red, far-red light phototransduction, GO:0009627 - systemic acquired resistance, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009640 - photomorphogenesis, GO:0009694 - jasmonic acid metabolic process, GO:0009734 - auxin mediated signaling pathway, GO:0009861 - jasmonic acid and ethylene-dependent systemic resistance, GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway, GO:0010119 - regulation of stomatal movement, GO:0010193 - response to ozone, GO:0031348 - negative regulation of defense response, GO:0070566 - adenylyltransferase activity, GO:0080123 - jasmonate-amino synthetase activity, GO:0006952 - defense response, GO:0009695 - jasmonic acid biosynthetic process, GO:0052315 - phytoalexin biosynthetic process, GO:0046688 - response to copper ion, GO:0050832 - defense response to fungus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009901 - anther dehiscence	TO:0006001 - salt tolerance, TO:0000164 - stress trait, TO:0000206 - leaf angle, TO:0002672 - auxin content, TO:0000179 - biotic stress trait, TO:0002668 - jasmonic acid content, TO:0002669 - diterpenoid phytoalexin content, TO:0000172 - jasmonic acid sensitivity, TO:0000021 - copper sensitivity, TO:0000074 - blast disease, TO:0000163 - auxin sensitivity, TO:0000420 - fertility related trait, TO:0000474 - glume opening, TO:0000609 - potassium content	PO:0009006 - shoot system , PO:0009066 - anther , PO:0007616 - flowering stage 
9297	JAR2	OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2	JASMONYL-L-ISOLEUCINE SYNTHASE 2	jasmonyl-L-isoleucine synthase 2, JASMONATE RESISTANT 2, GRETCHEN HAGEN 3.3	JASMONYL-L-ISOLEUCINE SYNTHASE 2		1	LOC_Os01g12160. Q5NAZ7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0221100 	LOC_Os01g12160.2, LOC_Os01g12160.1		0		GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0016874 - ligase activity	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	
9298	JAR3	OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12	JASMONYL-L-ISOLEUCINE SYNTHASE 3	jasmonyl-L-isoleucine synthase 3	JASMONYL-L-ISOLEUCINE SYNTHASE 3		11	LOC_Os11g08340. Q53P49.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0186500 	LOC_Os11g08340.1		0		GO:0009651 - response to salt stress, GO:0080123 - jasmonate-amino synthetase activity, GO:0005773 - vacuole, GO:0009733 - response to auxin stimulus, GO:0010119 - regulation of stomatal movement, GO:0010193 - response to ozone, GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway, GO:0009861 - jasmonic acid and ethylene-dependent systemic resistance, GO:0009694 - jasmonic acid metabolic process, GO:0009640 - photomorphogenesis, GO:0009585 - red, far-red light phototransduction, GO:0009416 - response to light stimulus, GO:0009627 - systemic acquired resistance, GO:0009507 - chloroplast, GO:0031348 - negative regulation of defense response, GO:0070566 - adenylyltransferase activity	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	
9299	RSN1	Rsn1	RHIZOCTONIA SOLANI NECROSIS 1		_	rsn1	7	P0657H12.28. cytokinin-O-glucosyltransferase. locus controlling sensitivity of rice to a necrosis-inducing phytotoxin from Rhizoctonia solani. LOC_Os07g30610(Os07g0489200) or LOC_Os07g30620(Os07g0489300).	 Tolerance and resistance - Disease resistance				0				
9300	BH4	Bh4, OsATL14, ATL14	BLACK HULL 4	Black hull 4, amino acid transporter-like 14	AMINO ACID TRANSPORTER		4	LOC_Os04g38660/LOC_Os04g38670. cDNA from W1943 (FQ377518), cDNA from Guangluai 4 (FQ377519), ORW1943Ba0077G13 (FQ377585), and Bh4 genomic sequences of 52 cultivated and wild rice varieties (FQ377520-FQ377566 and FQ377579-FQ377583). KC128691 to KC128808. Os04g0460000 (not found in RapDB, Ncbi and UniProt).	 Biochemical character,  Coloration - Others	Os04g0460200	LOC_Os04g38670.1, LOC_Os04g38660.1		0		GO:0016021 - integral to membrane, GO:0043473 - pigmentation	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color	
9301	EHD3	Ehd3	EARLY HEADING DATE 3	Early heading date3, PHD transcription factor	PHD-FINGER CONTAINING PROTEIN		8	LOC_Os08g01420. a nuclear protein with PHD fingers. HQ858842.	 Reproductive organ - Heading date	Os08g0105000	LOC_Os08g01420.1		0		GO:0009908 - flower development, GO:0009648 - photoperiodism, GO:0008270 - zinc ion binding	TO:0002616 - flowering time	
9302	AMT2;2	OsAMT2;2, AMT2;2, OsAMT2.2	AMMONIUM TRANSPORTER 2;2	Ammonium transporter 2 member 2, AMMONIUM TRANSPORTER 2;2	AMMONIUM TRANSPORTER 2;2		1	Q8S233. AP003252.	 Biochemical character	Os01g0831300	LOC_Os01g61510.1		0		GO:0016021 - integral to membrane, GO:0008519 - ammonium transmembrane transporter activity		
9303	AMT2;3	OsAMT2;3, AMT2;3, OsAMT2.3	AMMONIUM TRANSPORTER 2;3	Ammonium transporter 2 member 3, AMMONIUM TRANSPORTER 2;3	AMMONIUM TRANSPORTER 2;3		1	Q8S230. AP003252.	 Biochemical character	Os01g0831900	LOC_Os01g61550.1		0		GO:0008519 - ammonium transmembrane transporter activity, GO:0016021 - integral to membrane		
9304	AMT3;2	AMT3;2, OsAMT3;2, OsAMT3.2	AMMONIUM TRANSPORTER 3;2	AMMONIUM TRANSPORTER 3;2, Ammonium transporter 3 member 2	AMMONIUM TRANSPORTER 3;2		3	Q851M9. AC104487.	 Biochemical character	Os03g0838400	LOC_Os03g62200.1		0		GO:0016021 - integral to membrane, GO:0008519 - ammonium transmembrane transporter activity		
9305	AMT3;3	OsAMT3;3, AMT3;3, OsAMT3.3	AMMONIUM TRANSPORTER 3;3	AMMONIUM TRANSPORTER 3;3, Ammonium transporter 3 member 3	AMMONIUM TRANSPORTER 3;3		2	Q69T29. AP004775.	 Biochemical character	Os02g0550800	LOC_Os02g34580.1		0		GO:0016021 - integral to membrane, GO:0008519 - ammonium transmembrane transporter activity		
9306	ASN1	OsASN1, OsAS1, AS1	ASPARAGINE SYNTHETASE 1	asparagine synthetase 1, Asparagine Synthetase1	ASPARAGINE SYNTHETASE 1	as1, as1-m1, as1-m2	3	CI197925. LOC_Os03g18130. APC regulator. APC regulatory subunit. GO:1904844: response to L-glutamine.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0291500	LOC_Os03g18130.4, LOC_Os03g18130.3, LOC_Os03g18130.2, LOC_Os03g18130.1		0		GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity, GO:0060359 - response to ammonium ion, GO:0006529 - asparagine biosynthetic process, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence, TO:0002673 - amino acid content	PO:0000071 - companion cell , PO:0009005 - root , PO:0001054 - 4 leaf senescence stage 
9307	ASN	OsASN2, OsAS, OsAS2, AS2	ASPARAGINE SYNTHETASE 	asparagine synthetase 2, Asparagine Synthetase2	ASPARAGINE SYNTHETASE		6	D83378, U55873. D15438. Q43011. GO:0070981:L-asparagine biosynthetic process. GO:1904844: response to L-glutamine.	 Biochemical character	Os06g0265000	LOC_Os06g15420.1		0		GO:0005524 - ATP binding, GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity, GO:0006529 - asparagine biosynthetic process, GO:0006541 - glutamine metabolic process		PO:0000071 - companion cell , PO:0025034 - leaf , PO:0020104 - leaf sheath 
9308	GDH2	OsGDH2	GLUTAMATE DEHYDROGENASE 2	glutamate dehydrogenase 2	GLUTAMATE DEHYDROGENASE 2		4	AB189166.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0543900	LOC_Os04g45970.2, LOC_Os04g45970.1		0		GO:0004353 - glutamate dehydrogenase [NAD(P)+] activity, GO:0004352 - glutamate dehydrogenase activity, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0050897 - cobalt ion binding, GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0006520 - cellular amino acid metabolic process		
9309	GDH3	OsGDH3	GLUTAMATE DEHYDROGENASE 3	glutamate dehydrogenase 3	GLUTAMATE DEHYDROGENASE 3		2	AB035927.	 Biochemical character	Os02g0650900	LOC_Os02g43470.1		0		GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane, GO:0006520 - cellular amino acid metabolic process, GO:0050897 - cobalt ion binding, GO:0004353 - glutamate dehydrogenase [NAD(P)+] activity, GO:0005507 - copper ion binding, GO:0005524 - ATP binding, GO:0004352 - glutamate dehydrogenase activity, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion		
9310	_	OsGLN1;3, GLN1;3, OsGS1;3, GS1;3	_	cytosolic glutamine synthase 3, cytosolic glutamine synthethase 1;3, GLUTAMINE SYNTHETASE 1;3, glutamine synthetase 1;3	_		3	AB180689. Q4W8D0.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0712800	LOC_Os03g50490.1		0		GO:0005524 - ATP binding, GO:0022626 - cytosolic ribosome, GO:0046686 - response to cadmium ion, GO:0004356 - glutamate-ammonia ligase activity, GO:0005886 - plasma membrane, GO:0005507 - copper ion binding, GO:0006542 - glutamine biosynthetic process, GO:0009399 - nitrogen fixation, GO:0009507 - chloroplast, GO:0010150 - leaf senescence	TO:0000430 - germination rate, TO:0000249 - leaf senescence	PO:0009051 - spikelet , PO:0001054 - 4 leaf senescence stage 
9311	GLT1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1	NADH-DEPENDENT GLUTAMATE SYNTHASE 1	NADH-glutamate synthase 1, glutamate synthase, NADH-glutamate synthase, NADH-Glu synthase, Glutamate synthase (NADPH) small chain, NADH-dependent glutamate synthase1, NADH-dependent glutamate synthase 1	NADH-DEPENDENT GLUTAMATE SYNTHASE 1	nadh-gogat1	1	LOC_Os01g48960. AB008845, AB001916. Q0JKD0. D16060. AY427565 (promoter). GO:0097054:L-glutamate biosynthetic process.	 Biochemical character,  Character as QTL - Yield and productivity	Os01g0681900	LOC_Os01g48960.1		0		GO:0005506 - iron ion binding, GO:0006537 - glutamate biosynthetic process, GO:0019676 - ammonia assimilation cycle, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0016040 - glutamate synthase (NADH) activity, GO:0050660 - FAD binding, GO:0060359 - response to ammonium ion, GO:0009536 - plastid, GO:0048589 - developmental growth, GO:0010181 - FMN binding, GO:0009507 - chloroplast	TO:0000152 - panicle number, TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000371 - yield trait	PO:0006343 - axillary shoot system , PO:0004709 - axillary bud , PO:0009005 - root 
9312	GLT2	OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2	NADH-DEPENDENT GLUTAMATE SYNTHASE 2	NADH-glutamate synthase 2, NADH-dependent glutamate synthase2, NADH-dependent glutamate synthase 2	NADH-DEPENDENT GLUTAMATE SYNTHASE 2		5	LOC_Os05g48200. AB274818. Q0DG35. GO:0097054:L-glutamate biosynthetic process.	 Biochemical character,  Vegetative organ - Leaf	Os05g0555600	LOC_Os05g48200.1		0		GO:0050660 - FAD binding, GO:0019676 - ammonia assimilation cycle, GO:0005506 - iron ion binding, GO:0016040 - glutamate synthase (NADH) activity, GO:0006537 - glutamate biosynthetic process, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0046686 - response to cadmium ion, GO:0009570 - chloroplast stroma, GO:0006541 - glutamine metabolic process, GO:0010181 - FMN binding, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence, TO:0000456 - spikelet number	PO:0000048 - leaf lamina vascular system , PO:0001054 - 4 leaf senescence stage 
9313	ABC1	OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT	ABNORMAL CYTOKININ RESPONSE 1	ferredoxin-glutamate synthase, ferredoxin-GOGAT, Ferredoxin-dependent Glu synthase, ferredoxin-dependent glutamate synthase, spotted leaf 32	FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE	spl32, abc1, abc1-1, abc1-2	7	LOC_Os07g46460. AB024716, AB061357. AJ132280. Q69RJ0. GO:0097054:L-glutamate biosynthetic process. GO:1900055: regulation of leaf senescence. GO:0072593: reactive oxygen species metabolic process. GO:1901668: regulation of superoxide dismutase activity. TO:0020093: nitrogen content.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0658400	LOC_Os07g46460.1		0		GO:0042742 - defense response to bacterium, GO:0080114 - positive regulation of glycine hydroxymethyltransferase activity, GO:0006537 - glutamate biosynthetic process, GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence, GO:0031347 - regulation of defense response, GO:0016020 - membrane, GO:0005739 - mitochondrion, GO:0006541 - glutamine metabolic process, GO:0009416 - response to light stimulus, GO:0009570 - chloroplast stroma, GO:0009853 - photorespiration, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0009941 - chloroplast envelope, GO:0016041 - glutamate synthase (ferredoxin) activity, GO:0046872 - metal ion binding, GO:0048046 - apoplast, GO:0019676 - ammonia assimilation cycle, GO:0080093 - regulation of photorespiration, GO:0009409 - response to cold, GO:0042128 - nitrate assimilation, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0006520 - cellular amino acid metabolic process, GO:0042744 - hydrogen peroxide catabolic process	TO:0000326 - leaf color, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000249 - leaf senescence, TO:0000175 - bacterial blight disease resistance, TO:0000495 - chlorophyll content, TO:0002673 - amino acid content, TO:0000303 - cold tolerance, TO:0000466 - carbon content, TO:0000340 - total soluble sugar content	PO:0001054 - 4 leaf senescence stage 
9314	SULTR1;1	OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b)	SULPHATE TRANSPORTER 1;1	sulphate transporter 1;1, arsenic-responsive high affinity sulfate transporter, sulfate transporter 1;1	_		3	LOC_Os03g09970. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0195800	LOC_Os03g09970.4, LOC_Os03g09970.3, LOC_Os03g09970.2, LOC_Os03g09970.1		0		GO:0046685 - response to arsenic, GO:0005886 - plasma membrane, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009628 - response to abiotic stimulus, GO:0010288 - response to lead ion, GO:0010039 - response to iron ion, GO:0009970 - cellular response to sulfate starvation, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0010038 - response to metal ion	TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000034 - chromium sensitivity, TO:0000224 - iron sensitivity	PO:0009005 - root , PO:0009072 - plant ovary , PO:0020148 - shoot apical meristem 
9315	SULTR1;2	OsSultr1;2, OsSul1;2	SULPHATE TRANSPORTER 1;2	sulphate transporter 1;2	_		3	LOC_Os03g09980.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0196000	LOC_Os03g09980.1		0		GO:0009651 - response to salt stress, GO:0002242 - defense response to parasitic plant, GO:0010288 - response to lead ion, GO:0009414 - response to water deprivation, GO:0046685 - response to arsenic, GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion	TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root 
9316	SULTR1;3	OsSultr1;3, OsSul1;3	SULPHATE TRANSPORTER 1;3	sulphate transporter 1;3	_		8	LOC_Os08g31410.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os08g0406400	LOC_Os08g31410.7, LOC_Os08g31410.6, LOC_Os08g31410.5, LOC_Os08g31410.4, LOC_Os08g31410.3, LOC_Os08g31410.2, LOC_Os08g31410.1		0		GO:0046685 - response to arsenic, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0009414 - response to water deprivation, GO:0010288 - response to lead ion, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0002242 - defense response to parasitic plant	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
9318	SULTR2;1	OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2	SULPHATE TRANSPORTER 2;1	sulphate transporter 2;1	_		3	LOC_Os03g09940. A phosphate starvation responsive sequence (PHR1- binding sequence) was identified in promoter (Kumar et al. 2015). OsaSULTR2 in Yuan et al. 2016. a predicted target gene of OsamiR395.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0195500/Os03g0195450			0		GO:0046685 - response to arsenic, GO:0009651 - response to salt stress, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0050832 - defense response to fungus, GO:0009970 - cellular response to sulfate starvation, GO:0009409 - response to cold, GO:0002242 - defense response to parasitic plant	TO:0000034 - chromium sensitivity, TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009005 - root 
9319	SULTR2;2	OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1	SULPHATE TRANSPORTER 2;2	sulphate transporter 2;2	_		3	LOC_Os03g09930. LOC4331932 (Os03g0195300/Os03g0195400). OsaSULTR2;1 in Yuan et al. 2016, Zheng et al. 2017. a predicted target gene of OsamiR395.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0195300	LOC_Os03g09930.2, LOC_Os03g09930.1		0		GO:0009970 - cellular response to sulfate starvation, GO:0046688 - response to copper ion, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0010288 - response to lead ion, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0002242 - defense response to parasitic plant, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000021 - copper sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000034 - chromium sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance	PO:0009072 - plant ovary , PO:0009049 - inflorescence , PO:0020148 - shoot apical meristem , PO:0025034 - leaf 
9320	SULTR3;1	OsSultr3;1, OsSul3;1	SULPHATE TRANSPORTER 3;1	sulphate transporter 3;1	_		10	LOC_Os10g28440. A phosphate starvation responsive sequence (PHR1- binding sequence) was identified in promoter (Kumar et al. 2015).	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0420400	LOC_Os10g28440.1		0		GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0002242 - defense response to parasitic plant, GO:0009414 - response to water deprivation, GO:0046685 - response to arsenic, GO:0010288 - response to lead ion, GO:0009409 - response to cold	TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000034 - chromium sensitivity	PO:0001170 - seed development stage , PO:0009073 - stigma , PO:0025034 - leaf , PO:0009005 - root 
9321	SULTR3;2	OsSultr3;2, OsSul3;2	SULPHATE TRANSPORTER 3;2	sulphate transporter 3;2	_		3	LOC_Os03g06520. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0161200	LOC_Os03g06520.2, LOC_Os03g06520.1		0		GO:0010288 - response to lead ion, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion, GO:0048316 - seed development, GO:0010039 - response to iron ion, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0009507 - chloroplast, GO:0016021 - integral to membrane, GO:0046685 - response to arsenic, GO:0009651 - response to salt stress	TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000034 - chromium sensitivity, TO:0000653 - seed development trait	PO:0009005 - root , PO:0001170 - seed development stage , PO:0009073 - stigma , PO:0025034 - leaf 
9322	LPA	OsSultr3;3, OsSul3;3, SULTR3;3	LOW PHYTIC ACID 	sulphate transporter 3;3, low phytic acid	SULPHATE TRANSPORTER 3;3	lap, ossultr3;3	4	LOC_Os04g55800. KT188446, KT188447. TO:0006045 phosphorus concentration. TO:0006046 sulfur concentration. TO:0020102 phosphate content.	 Biochemical character,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os04g0652400	LOC_Os04g55800.1		0		GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0005783 - endoplasmic reticulum, GO:0006790 - sulfur metabolic process, GO:0006797 - polyphosphate metabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010288 - response to lead ion, GO:0046685 - response to arsenic, GO:0046686 - response to cadmium ion, GO:0048316 - seed development, GO:0055063 - sulfate ion homeostasis, GO:0032958 - inositol phosphate biosynthetic process	TO:0000653 - seed development trait, TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000488 - seed composition based quality trait	PO:0001170 - seed development stage , PO:0009073 - stigma , PO:0025034 - leaf , PO:0009005 - root 
9323	SULTR3;4	OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT	SULPHATE TRANSPORTER 3;4	sulphate transporter 3;4, SULTR-like phosphorus distribution transporter	_	spdt, spdt-1, spdt-2, spdt-3	6	LOC_Os06g05160. A phosphate starvation responsive sequence (PHR1- binding sequence) was identified in promoter (Kumar et al. 2015). a predicted target gene of OsamiR395. a plasma membrane-localized transporter for phosphorus.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0143700	LOC_Os06g05160.1		0		GO:0010288 - response to lead ion, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0009970 - cellular response to sulfate starvation, GO:0046685 - response to arsenic, GO:0048316 - seed development, GO:0015116 - sulfate transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0009506 - plasmodesma, GO:0008271 - secondary active sulfate transmembrane transporter activity	TO:0002666 - seed phosphorus content, TO:0001024 - phosphorus content, TO:0001025 - leaf phosphorus content, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009073 - stigma , PO:0025034 - leaf , PO:0009005 - root , PO:0005352 - xylem 
9324	SULTR3;5	OsSultr3;5, OsSul3;5	SULPHATE TRANSPORTER 3;5	sulphate transporter 3;5	_		1	LOC_Os01g41050.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0593700	LOC_Os01g41050.1		0		GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0046685 - response to arsenic, GO:0046686 - response to cadmium ion, GO:0048316 - seed development	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance	PO:0001170 - seed development stage , PO:0009073 - stigma , PO:0025034 - leaf , PO:0009005 - root 
9325	SULTR3;6	OsSultr3;6, OsSul3;6, OsSULTR3;6	SULPHATE TRANSPORTER 3;6	sulphate transporter 3;6	_		1		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0719300	LOC_Os01g52130.1		0		GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0048316 - seed development, GO:0042742 - defense response to bacterium	TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000203 - bacterial leaf streak disease resistance	PO:0001170 - seed development stage , PO:0009073 - stigma , PO:0025034 - leaf , PO:0009005 - root 
9326	SULTR4;1	OsSultr4;1, OsSul4;1, OsSultr4;1(a), OsSultr4;1(b), OsSultr4;1(c), OsSultr4;1(d)	SULPHATE TRANSPORTER 4;1	sulphate transporter 4;1	_		9	LOC_Os09g06499.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0240500	LOC_Os09g06499.2, LOC_Os09g06499.1		0		GO:0009414 - response to water deprivation, GO:0046685 - response to arsenic, GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion, GO:0009970 - cellular response to sulfate starvation, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0048316 - seed development, GO:0008271 - secondary active sulfate transmembrane transporter activity	TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0001170 - seed development stage , PO:0025034 - leaf 
9327	SULTR5;1	OsSultr5;1, OsSul5;1	SULPHATE TRANSPORTER 5;1	sulphate transporter 5;1	_		1	LOC_Os01g45830.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0645900	LOC_Os01g45830.1		0		GO:0048316 - seed development, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0046685 - response to arsenic, GO:0010288 - response to lead ion, GO:0009651 - response to salt stress	TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance	PO:0001170 - seed development stage 
9328	SULTR5;2	OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8	SULPHATE TRANSPORTER 5;2	sulphate transporter 5;2, MOLYBDATE TRANSPORTER1;1, MOLYBDATE TRANSPORTER 1;1	_	osmot1;1	8	TO:0006056: molybdenum content. QTL qGMo8 that controls the variation in grain Mo concentration encodes a molybdate transporter OsMOT1;1 (Huang et al. 2019). GO:0090550: response to molybdenum starvation.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os08g0101500	LOC_Os08g01120.1		0		GO:0016021 - integral to membrane, GO:0015098 - molybdate ion transmembrane transporter activity, GO:0048316 - seed development, GO:0002242 - defense response to parasitic plant, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010288 - response to lead ion, GO:0046685 - response to arsenic, GO:0046686 - response to cadmium ion	TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000025 - molybdenum sensitivity	PO:0009005 - root , PO:0001170 - seed development stage 
9330	CML19	OsCML19	CALMODULIN-LIKE PROTEIN 19	calmodulin-like protein 19	CALMODULIN-LIKE PROTEIN 19		1	Q8RYJ8.		Os01g0955500	LOC_Os01g72550.1		0		GO:0005509 - calcium ion binding		
9331	CML23	OsCML23	CALMODULIN-LIKE PROTEIN 23	calmodulin-like protein 23	CALMODULIN-LIKE PROTEIN 23		1	Q8RYJ9.		Os01g0955400 	LOC_Os01g72540.1		0		GO:0005509 - calcium ion binding		
9332	CML25	OsCML25	CALMODULIN-LIKE PROTEIN 25	calmodulin-like protein 25	CALMODULIN-LIKE PROTEIN 25		11	Q2QYW1.		Os11g0105000	LOC_Os11g01390.1		0		GO:0005509 - calcium ion binding		
9333	CML26	OsCML26	CALMODULIN-LIKE PROTEIN 26	calmodulin-like protein 26	CALMODULIN-LIKE PROTEIN 26		12	Q2QYW1.		Os12g0104900 	LOC_Os12g01400.1		0		GO:0005509 - calcium ion binding		
9334	_	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1	_	calmodulin 1, calmodulin 1-1, calmodulin 3	_		3	Q0JNS6. CAM3 in Zhang et al. 2013.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0319300	LOC_Os03g20370.1		0		GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0019722 - calcium-mediated signaling, GO:0005773 - vacuole, GO:0010099 - regulation of photomorphogenesis, GO:0009846 - pollen germination, GO:0005886 - plasma membrane	TO:0000696 - starch content, TO:0000328 - sucrose content, TO:0006001 - salt tolerance	
9335	_	OsCaM3, OsCam3	_	calmodulin 3	_		1	Q0JNL7.	 Biochemical character	Os01g0279300	LOC_Os01g17190.1		0		GO:0010099 - regulation of photomorphogenesis, GO:0005509 - calcium ion binding, GO:0019722 - calcium-mediated signaling, GO:0009846 - pollen germination, GO:0005886 - plasma membrane, GO:0005773 - vacuole		
9336	_	OsVTE1	_	tocopherol cyclase, VITAMIN E DEFICIENT 1	_		2	Q6K7V6. vitamin E biosynthetic enzyme.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0276500	LOC_Os02g17650.2, LOC_Os02g17650.1		0		GO:0009976 - tocopherol cyclase activity, GO:0009266 - response to temperature stimulus, GO:0031347 - regulation of defense response, GO:0006979 - response to oxidative stress, GO:0009915 - phloem loading, GO:0010264 - myo-inositol hexakisphosphate biosynthetic process, GO:0009651 - response to salt stress, GO:0010287 - plastoglobule, GO:0006631 - fatty acid metabolic process, GO:0015994 - chlorophyll metabolic process, GO:0009534 - chloroplast thylakoid, GO:0009706 - chloroplast inner membrane, GO:0016122 - xanthophyll metabolic process, GO:0010189 - vitamin E biosynthetic process	TO:0002657 - oxidative stress	
9337	EXPB5	OxEXPB5, osaEXPb1.19	BETA-EXPANSIN 5	expansin B5, Expansin-B5, Beta-expansin-5	BETA-EXPANSIN 5		4	AF261273, AY039024. Q7XT39.	 Biochemical character,  Vegetative organ - Root	Os04g0552200	LOC_Os04g46650.1		0		GO:0007047 - cell wall organization, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0019953 - sexual reproduction, GO:0005576 - extracellular region		
9338	EXPB6	OsEXPB6, osaEXPb1.8, EXPb1.8	BETA-EXPANSIN 6	Expansin-B6, Beta-expansin-6	BETA-EXPANSIN 6		10	LOC_Os10g40700. AF261274(cDNA), AC037426?(genomic). Q7XCA7.	 Biochemical character,  Vegetative organ - Culm	Os10g0555600	LOC_Os10g40700.1		0		GO:0019953 - sexual reproduction, GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall	TO:0000207 - plant height	
9339	EXPB7	OsEXPB7, osaEXPb1.12	BETA-EXPANSIN 7	Expansin-B7, Beta-expansin-7	BETA-EXPANSIN 7		3	AF261275. Q9LD07.	 Biochemical character	Os03g0102700	LOC_Os03g01270.2, LOC_Os03g01270.1		0		GO:0005618 - cell wall, GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0019953 - sexual reproduction		
9340	EXPB8		BETA-EXPANSIN 8		BETA-EXPANSIN 8				 Biochemical character				0				
9341	EXPB9	OsEXPB9, osaEXPb1.6	BETA-EXPANSIN 9	Expansin-B9, Beta-expansin-9	BETA-EXPANSIN 9		10	Q7XCG7.	 Biochemical character	Os10g0548600	LOC_Os10g40090.1		0		GO:0005576 - extracellular region, GO:0019953 - sexual reproduction, GO:0016020 - membrane, GO:0005618 - cell wall		
9342	EXPB10	OsEXPB10, osaEXPb1.5	BETA-EXPANSIN 10	Expansin-B10, Beta-expansin-10	BETA-EXPANSIN 10		3	Q8H7T4.	 Biochemical character	Os03g0106800	LOC_Os03g01640.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0019953 - sexual reproduction		
9343	EXPB11	OsEXPB11, osaEXPb1.20	BETA-EXPANSIN 11	Expansin-B11, Beta-expansin-11	BETA-EXPANSIN 11		2	LOC_Os02g44108. Q6H676.	 Biochemical character	Os02g0658800	LOC_Os02g44108.1		0		GO:0016020 - membrane, GO:0019953 - sexual reproduction, GO:0005576 - extracellular region, GO:0005618 - cell wall		
9344	EXPB12		BETA-EXPANSIN 12		BETA-EXPANSIN 12				 Biochemical character				0				
9345	EXPB13	OsEXPB13, osaEXPb1.4p	BETA-EXPANSIN 13	Expansin-B13, Beta-expansin-13	BETA-EXPANSIN 13		3	Q946J4.	 Biochemical character	Os03g0106700	LOC_Os03g01630.1		0		GO:0019953 - sexual reproduction, GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall		
9346	EXPB14	OsEXPB14, osaEXPb1.18	BETA-EXPANSIN 14	Expansin-B14, Beta-expansin-14	BETA-EXPANSIN 14		2	Q6H677.	 Biochemical character	Os02g0658600	LOC_Os02g44106.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0019953 - sexual reproduction		
9348	_	OsGR-RBP4	_	glycine-rich RNA binding protein4	_	Osgr-rbp4			 Biochemical character				0				
9349	_	OsFKBP20	_	FK506 binding protein 20	_				 Biochemical character				0				
9350	_	DREB2B	_	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2B	_				 Tolerance and resistance - Stress tolerance				0				
9351	GLYI1	OsGLYI1	GLYOXALASE I-1	glyoxalase I-1	GLYOXALASE I-1		1		 Biochemical character	Os01g0173600 	LOC_Os01g07850.1		0				
9352	GLYI2	OsGLYI2	GLYOXALASE I-2	glyoxalase I-2	GLYOXALASE I-2		2		 Biochemical character	Os02g0280500 	LOC_Os02g17920.1		0				
9353	GLYI3	OsGLYI3	GLYOXALASE I-3	glyoxalase I-3	GLYOXALASE I-3		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0277500 	LOC_Os03g16940.1		0				
9354	GLYI4	OsGLYI4	GLYOXALASE I-4	glyoxalase I-4	GLYOXALASE I-4		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0659300 	LOC_Os03g45720.1		0				
9355	GLYI5	OsGLYI5	GLYOXALASE I-5	glyoxalase I-5	GLYOXALASE I-5		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0538900 	LOC_Os04g45590.1		0				
9356	GLYI6	OsGLYI6, OsGLYI6.1, OsGLYI6.2, OsGLYI6.3, OsGLYI6.4, OsGLYI6.5	GLYOXALASE I-6	glyoxalase I-6	GLYOXALASE I-6		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0171900 	LOC_Os05g07940.5, LOC_Os05g07940.4, LOC_Os05g07940.3, LOC_Os05g07940.2, LOC_Os05g07940.1		0				
9357	GLYI7	OsGLYI7, OsGLYI7.1, OsGLYI7.2	GLYOXALASE I-7	glyoxalase I-7	GLYOXALASE I-7		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0230900 	LOC_Os05g14194.2, LOC_Os05g14194.1		0				
9358	GLYI8	OsGLYI8, OsGLYI-8, GLYI-8	GLYOXALASE I-8	glyoxalase I-8, glyoxalase I enzyme 8	GLYOXALASE I-8		5	EEC78918.1 (indica). rice ortholog of AtGLYI-2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0295800 	LOC_Os05g22970.1		0		GO:0004462 - lactoylglutathione lyase activity, GO:0009507 - chloroplast, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0046686 - response to cadmium ion, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0051596 - methylglyoxal catabolic process, GO:0005829 - cytosol		
9359	GLYI9	OsGLYI9, OsGLYI9.1, OsGLYI9.2	GLYOXALASE I-9	glyoxalase I-9	GLYOXALASE I-9		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0160400 	LOC_Os07g06660.2, LOC_Os07g06660.1		0				
9360	GLYI10	OsGLYI10, OsEnS-113	GLYOXALASE I-10	glyoxalase I-10, endosperm-specific gene 113	GLYOXALASE I-10		7	LOC_Os07g46360.	 Biochemical character	Os07g0657100 	LOC_Os07g46360.1		0				
9361	GLYI-11	OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33	GLYOXALASE I-11	glyoxalase I-11, 33-kDa Allergen	GLYOXALASE I-11		8	AB017042. Q948T6.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0191700 	LOC_Os08g09250.3, LOC_Os08g09250.2, LOC_Os08g09250.1		0		GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0004462 - lactoylglutathione lyase activity, GO:0046688 - response to copper ion, GO:0019863 - IgE binding, GO:0016151 - nickel ion binding, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0006970 - response to osmotic stress, GO:0046872 - metal ion binding	TO:0000168 - abiotic stress trait, TO:0000021 - copper sensitivity	PO:0009010 - seed , PO:0009047 - stem , PO:0025034 - leaf 
9362	GLYII-1	OsGLYII1, GLYII1, OsETHE1, ETHE1, OsGLYII-1	GLYOXALASE II-1	glyoxalase II-1, ETHYLMALONIC ENCEPHALOPATHY PROTEIN 1, ETHE1-like protein, ethylmalonic encephalopathy-1	GLYOXALASE II-1		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0667200 	LOC_Os01g47690.2, LOC_Os01g47690.1		0			TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000432 - temperature response trait, TO:0000394 - drought related trait, TO:0002657 - oxidative stress, TO:0000429 - salt sensitivity	
9363	GLYII-2	OsGLYII2, GLYII2, OsGLYII-2	GLYOXALASE II-2	glyoxalase II-2	GLYOXALASE II-2		3	LOC_Os03g21460.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0332400 	LOC_Os03g21460.1		0		GO:0006950 - response to stress, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait	
9364	GLYII-3	OsGLYII3, GLYII3, gly II, OsGLYII-3	GLYOXALASE II-3	glyoxalase II-3, glyoxalase II	GLYOXALASE II-3		9	glyoxalase II in Singla-Pareek et al. 2003. AY054407.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0516600 	LOC_Os09g34100.1		0		GO:0006750 - glutathione biosynthetic process, GO:0009507 - chloroplast, GO:0004416 - hydroxyacylglutathione hydrolase activity, GO:0008270 - zinc ion binding, GO:0008800 - beta-lactamase activity, GO:0005506 - iron ion binding		
9365	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3	_	SAP and MIZ 1, SUMO ligase Siz1, Siz/PIAS-type SUMO ligase 1, SIZ/PIAS-type SUMO E3 ligase 1, E3 SUMO-protein ligase SIZ1	_	Ossiz1, ossiz1	5	SUMO E3 ligase, homolog of Arbidopsis SIZ. Q6L4L4.	 Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0125000	LOC_Os05g03430.3, LOC_Os05g03430.2, LOC_Os05g03430.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0016874 - ligase activity	TO:0000146 - seed length, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
9366	SIZ2	OsSIZ2	_	SAP and MIZ 2, SIZ/PIAS-type SUMO E3 ligase 2	_	Ossiz2, ossiz2	3	SUMO E3 ligase, homolog of Arbidopsis SIZ. Q6ASW7. GO:2000070:regulation of response to water deprivation. GO:1901698: response to nitrogen compound.	 Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0719100	LOC_Os03g50980.1		0		GO:0048316 - seed development, GO:0048653 - anther development, GO:0009901 - anther dehiscence, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0019789 - SUMO ligase activity, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0051301 - cell division, GO:0016049 - cell growth, GO:0009910 - negative regulation of flower development, GO:0016925 - protein sumoylation, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0040008 - regulation of growth, GO:0010337 - regulation of salicylic acid metabolic process, GO:0050826 - response to freezing	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000146 - seed length, TO:0000421 - pollen fertility, TO:0000455 - seed set percent, TO:0000653 - seed development trait	PO:0001004 - anther development stage , PO:0001170 - seed development stage , PO:0025034 - leaf 
9367	EXPA5	OsEXPA5, OsEXP5, osaEXPa1.20	ALPHA-EXPANSIN 5	Rice expansin-5, Expansin-A5, Alpha-expansin-5	ALPHA-EXPANSIN 5		2	AF394546. Q6ZGU9.		Os02g0744200	LOC_Os02g51040.1		0		GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0016020 - membrane		
9368	EXPA6	OsEXPA6, OsEXP6, osaEXPa1.24	ALPHA-EXPANSIN 6	Rice expansin-6, Expansin-A6, Alpha-expansin-6, Expansin S1	ALPHA-EXPANSIN 6		3	Q9M4X7.	 Tolerance and resistance - Stress tolerance	Os03g0336400	LOC_Os03g21820.1		0		GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall		
9369	EXPA8		ALPHA-EXPANSIN 8		ALPHA-EXPANSIN 8								0				
9371	EXPA9	OsEXPA9, OsEXP9, osaEXPa1.19	ALPHA-EXPANSIN 9	Rice expansin-9, Expansin-A9, Alpha-expansin-9	ALPHA-EXPANSIN 9		1	Q4PR53.		Os01g0249100	LOC_Os01g14660.1		0		GO:0016020 - membrane, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0005576 - extracellular region		
9372	EXPA10	OsEXPA10, OsEXP10, osaEXPa1.28	ALPHA-EXPANSIN 10	Expansin-A10	ALPHA-EXPANSIN 10		4	LOC_Os04g49410. Q7XUD0. GO:1900366: negative regulation of defense response to insect. GO:1900150: regulation of defense response to fungus. GO:1900425: negative regulation of defense response to bacterium.	 Vegetative organ - Culm,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os04g0583500	LOC_Os04g49410.1		0		GO:0009751 - response to salicylic acid stimulus, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0009826 - unidimensional cell growth, GO:0050832 - defense response to fungus, GO:0009723 - response to ethylene stimulus, GO:0010044 - response to aluminum ion	TO:0000592 - 1000-dehulled grain weight, TO:0000424 - brown planthopper resistance, TO:0000354 - aluminum sensitivity, TO:0000227 - root length, TO:0000173 - ethylene sensitivity, TO:0000207 - plant height, TO:0000734 - grain length, TO:0000145 - internode length, TO:0000397 - grain size, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0000025 - root tip 
9374	EXPA11	OsEXPA11, OsEXP11, osaEXPa1.25	ALPHA-EXPANSIN 11	expansin A11, Rice expansin-11, Expansin-A11, Alpha-expansin-11	ALPHA-EXPANSIN 11		1	Q4PNY1.	 Vegetative organ - Root	Os01g0274500	LOC_Os01g16770.1		0		GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0005618 - cell wall		
9375	EXPA12	OsEXPA12, OsEXP12, osaEXPa1.15	ALPHA-EXPANSIN 12	expansin A12, Rice expansin-12, Expansin-A12, Alpha-expansin-12	ALPHA-EXPANSIN 12		3	AF394548. Q7G6Z2.	 Vegetative organ - Root	Os03g0155300	LOC_Os03g06000.1		0		GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization		
9376	EXPA13	OsEXPA13, OsEXP13, osaEXPa1.13	ALPHA-EXPANSIN 13	expansin A13, Rice expansin-13, Expansin-A13, Alpha-expansin-13	ALPHA-EXPANSIN 13		2	AF394549. Q4PR52.	 Vegetative organ - Root	Os02g0267200	LOC_Os02g16730.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization		
9377	EXPA14	OsEXPA14, OsEXP14, osaEXPa1.11	ALPHA-EXPANSIN 14	Rice expansin-14, Expansin-A14, Alpha-expansin-14	ALPHA-EXPANSIN 14		2	AF394550. Q4PR51.		Os02g0267700	LOC_Os02g16780.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization		
9378	EXPA15	OsEXPA15, OsEXP15, osaEXPa1.8	ALPHA-EXPANSIN 15	expansin A15, Rice expansin-15, Expansin-A15, Alpha-expansin-15	ALPHA-EXPANSIN 15		3	AF394551. Q4PR50. LOC_Os03g06020. Os03g0155600 (in Uniprot).	 Vegetative organ - Root	Os03g0155700	LOC_Os03g06020.1		0		GO:0009664 - plant-type cell wall organization, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0005618 - cell wall		
9379	EXPA16	OsEXPA16, OsEXP16, osaEXPa1.27	ALPHA-EXPANSIN 16	Rice expansin-16, Expansin-A16, Alpha-expansin-16	ALPHA-EXPANSIN 16		6	LOC_Os06g41700. AF394552. Q69XV9.		Os06g0621900	LOC_Os06g41700.1		0		GO:0009664 - plant-type cell wall organization, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0005618 - cell wall		
9380	EXPA17	OsEXPA17, OsEXP17, osaEXPa1.31	ALPHA-EXPANSIN 17	expansin A17	ALPHA-EXPANSIN 17	OsexpA17	6	DQ061058. Q4PR49.	 Vegetative organ - Root	Os06g0108600 	LOC_Os06g01920.1		0		GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane		
9381	EXPA18	OsEXPA18, OsEXP18, osaEXPa1.3	ALPHA-EXPANSIN 18	Rice expansin-18, Expansin-A18, Alpha-expansin-18	ALPHA-EXPANSIN 18		3	AF394553. Q4PR48.	 Tolerance and resistance - Stress tolerance	Os03g0155900	LOC_Os03g06040.1		0		GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0010044 - response to aluminum ion, GO:0005576 - extracellular region	TO:0000354 - aluminum sensitivity	
9382	EXPA19	OsEXPA19, OsEXP19, osaEXPa1.2	ALPHA-EXPANSIN 19	Rice expansin-19, Expansin-A19, Alpha-expansin-19	ALPHA-EXPANSIN 19		3	AF394554. Q7G6Z5.		Os03g0156000	LOC_Os03g06050.1		0		GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0005576 - extracellular region		
9383	EXPA20	OsEXPA20, OsEXP20, osaEXPa1.1	ALPHA-EXPANSIN 20	Rice expansin-20, Expansin-A20, Alpha-expansin-20	ALPHA-EXPANSIN 20		3	AF394555. Q10RK1.	 Tolerance and resistance - Stress tolerance	Os03g0156300	LOC_Os03g06060.1		0		GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0010044 - response to aluminum ion, GO:0016020 - membrane	TO:0000354 - aluminum sensitivity	
9384	EXPA21	OsEXPA21, OsEXP21, osaEXPa1.21	ALPHA-EXPANSIN 21	Rice expansin-21, Expansin-A21, Alpha-expansin-21	ALPHA-EXPANSIN 21		3	AF394556. Q10KN4.		Os03g0377100	LOC_Os03g25990.1		0		GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization		
9385	EXPA22	OsEXPA22, OsEXP22, osaEXPa1.9	ALPHA-EXPANSIN 22	expansin A22, Rice expansin-22, Expansin-A22, Alpha-expansin-22	ALPHA-EXPANSIN 22		2	AF394557. Q4PR44.	 Vegetative organ - Root	Os02g0268600	LOC_Os02g16850.1		0		GO:0016020 - membrane, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization		
9386	ERF93	OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168	ETHYLENE RESPONSE FACTOR 93	ethylene response factor 1, ethylene responsive factor 1, ethylene response factor 93, APETALA2/ethylene-responsive element binding protein 168	ETHYLENE RESPONSE FACTOR 93		4	EF061888. BF889454. ERF1 in Hu et al. 2008.	 Vegetative organ - Root	Os04g0546800	LOC_Os04g46220.1		0		GO:0009753 - response to jasmonic acid stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0009723 - response to ethylene stimulus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity	
9387	EXPA23	OsEXPA23, OsEXP23, osaEXPa1.12	ALPHA-EXPANSIN 23	Rice expansin-23, Expansin-A23, Alpha-expansin-23	ALPHA-EXPANSIN 23		2	AF394558. Q4PR43 (Os02g0268000).		Os02g0268050	LOC_Os02g16839.1		0		GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0005576 - extracellular region, GO:0016020 - membrane		
9388	EXPA24	OsEXPA24, OsEXP24, osaEXPa1.10	ALPHA-EXPANSIN 24	Rice expansin-24, Expansin-A24, Alpha-expansin-24	ALPHA-EXPANSIN 24		2	AF394559. Q4PR42.		Os02g0267900	LOC_Os02g16800.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization		
9389	EXPA25	OsEXPA25, OsEXP25, osaEXPa1.6	ALPHA-EXPANSIN 25	Rice expansin-25, Expansin-A25, Alpha-expansin-25	ALPHA-EXPANSIN 25		3	AF394560. Q4PR41.	 Tolerance and resistance - Stress tolerance	Os03g0155500	LOC_Os03g06010.1		0		GO:0010044 - response to aluminum ion, GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization	TO:0000354 - aluminum sensitivity	
9390	EXPA26	EXPA26, OsEXP26, osaEXPa1.29	ALPHA-EXPANSIN 26	Rice expansin-26, Expansin-A26, Alpha-expansin-26	ALPHA-EXPANSIN 26		12	AF394561. Q2QP13.		Os12g0546800	LOC_Os12g36040.1		0		GO:0016020 - membrane, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization		
9391	EXPL1		EXPANSIN-LIKE 1		EXPANSIN-LIKE 1								0				
9392	EXPL2		EXPANSIN-LIKE 2		EXPANSIN-LIKE 2								0				
9393	EXPL3		EXPANSIN-LIKE 3		EXPANSIN-LIKE 3								0				
9394	EXPLR1		EXPANSIN-RELATED 1		EXPANSIN-RELATED 1								0				
9395	EXPA28		ALPHA-EXPANSIN 28		ALPHA-EXPANSIN 28								0				
9396	EXPA29	OsEXPA29	ALPHA-EXPANSIN 29		ALPHA-EXPANSIN 29		6	Q4PR39.	 Tolerance and resistance - Stress tolerance	Os06g0718100 	LOC_Os06g50400.1		0		GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0010044 - response to aluminum ion, GO:0016020 - membrane	TO:0000354 - aluminum sensitivity	
9397	OPR11	OsOPR11, OsOPR04-1	12-OXO-PHYTODIENOIC ACID REDUCTASE 11	12-oxo-phytodienoic acid reductase 11	12-OXO-PHYTODIENOIC ACID REDUCTASE 11		4		 Biochemical character				0				
9398	OPR12	OsOPR12, OsOPR04-2	12-OXO-PHYTODIENOIC ACID REDUCTASE 12	12-oxo-phytodienoic acid reductase 12	12-OXO-PHYTODIENOIC ACID REDUCTASE 12		4		 Biochemical character				0				
9399	OPR13	OsOPR13, OsOPR04-3	12-OXO-PHYTODIENOIC ACID REDUCTASE 13	12-oxo-phytodienoic acid reductase 13	12-OXO-PHYTODIENOIC ACID REDUCTASE 13		4		 Biochemical character				0				
9400	CYN	OsCYN	CYANASE	cyanase	CYANASE		10	NP_001064827. Q9FWK4.	 Biochemical character	Os10g0471300	LOC_Os10g33270.1		0		GO:0016836 - hydro-lyase activity, GO:0009439 - cyanate metabolic process, GO:0003677 - DNA binding, GO:0008824 - cyanate hydratase activity		
9401	ERF1	Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1	ETHYLENE RESPONSE FACTOR 1	ethylene response factor on chromosome 6, rice wax synthesis regulatory gene 2, wax synthesis regulator 2, Wax Synthesis Regulatory 2, ethylene response factor 1, APETALA2/ethylene-responsive element binding protein 57, Rice Drought-responsive gene 1	ETHYLENE RESPONSE FACTOR 1		6	rice ortholog of barley Nud. EF362638 (Indica).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0604000	LOC_Os06g40150.1		0		GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0010166 - wax metabolic process, GO:0010143 - cutin biosynthetic process, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009751 - response to salicylic acid stimulus	TO:0000709 - leaf gloss, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
9402	ERF3	Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12	ETHYLENE RESPONSE FACTOR 3	ethylene response factor on chromosome 2, rice wax synthesis regulatory gene 1, wax synthesis regulator 1, Wax Synthesis Regulatory 1, ethylene response factor 3, APETALA2/ethylene-responsive element binding protein 12	ETHYLENE RESPONSE FACTOR 3		2	rice homolog of barley Nud. a homologous gene of the Arabidopsis cuticle synthesis gene WIN1/SHN1.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0202000	LOC_Os02g10760.1		0		GO:0006351 - transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0010166 - wax metabolic process, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0010143 - cutin biosynthetic process	TO:0000276 - drought tolerance, TO:0000709 - leaf gloss	
9403	_	NOA1, OsNOA1	_	Nitric Oxide-Associated1, Nitric Oxide Associated protein 1	_		2	NM_001052149. Q6YPG5. cGTPase (circularly permuted GTPase). TO:0006060: leaf chlorosis.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os02g0104700	LOC_Os02g01440.1		0		GO:0005525 - GTP binding, GO:0009409 - response to cold, GO:0005739 - mitochondrion, GO:0004517 - nitric-oxide synthase activity	TO:0000319 - rubisco content, TO:0000303 - cold tolerance, TO:0000326 - leaf color, TO:0000495 - chlorophyll content	
9404	_	OsPorA, PORA, OsPORA	_	NADPH: protochlorophyllide oxidoreductase A, Protochlorophyllide oxidoreductase A	_		4	LOC_Os04g58200. NM_001060809. Q7XKF3.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os04g0678700	LOC_Os04g58200.3, LOC_Os04g58200.2, LOC_Os04g58200.1		0		GO:0048366 - leaf development, GO:0000166 - nucleotide binding, GO:0009658 - chloroplast organization, GO:0015979 - photosynthesis, GO:0009416 - response to light stimulus, GO:0015995 - chlorophyll biosynthetic process, GO:0016630 - protochlorophyllide reductase activity	TO:0000298 - chlorophyll ratio, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000075 - light sensitivity, TO:0000496 - carotenoid content, TO:0000655 - leaf development trait	PO:0001050 - leaf development stage 
9405	_	OsRALyase, OsFbox090, OsFbox90, Os_F0337	_	Ribosomal RNA apurinic site specific lyase, F-box protein 90	_		2	NM_001053416(obsolete). LOC_Os02g29150. Os_F0337 in Hua et al. 2011.	 Biochemical character	Os02g0493100	LOC_Os02g29150.2, LOC_Os02g29150.1		0				
9406	_	OsPuf4	_	RNA-binding protein of the Puf family member 4	_		12	NM_001073324.		Os12g0488900	LOC_Os12g30520.1		0		GO:0003723 - RNA binding		
9408	_	Os11gRGA3	_	R-gene analog 3	_	SasRGA3	11	AB604617, AB604618, AB604619, AB604620. NBS-LRR protein.	 Tolerance and resistance	Os11g0224900	LOC_Os11g11770.1		0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9409	_	Os11gRGA4, RGA4	_	R-gene analog 4	_	SasRGA4	11	Pia candidate RGA. Pia is composed of two adjacent genes SasRGA4 and SasRGA5. NBS-LRR protein. AB604621, AB604622, AB604623, AB604624, AB604625. RGA4 and RGA5 are also required for Pi-CO39 resistance.(Cesari et al.2013)	 Tolerance and resistance - Disease resistance				0		GO:0043531 - ADP binding, GO:0006952 - defense response		
9410	_	Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5	_	R-gene analog 5	_	SasRGA5	11	LOC_Os11g11810. Pia candidate RGA. Pia is composed of two adjacent genes SasRGA4 and SasRGA5. NBS-LRR protein. AB604626, AB604627 (Sasanishiki RGA5-A), AB604628, AB604629, AB604630. KC777365 (Sasanishiki RGA5-B), KC777364(CO39 RGA5-B). RGA4 and RGA5 are also required for Pi-CO39 resistance.(Cesari et al. 2013) Pi5 in Yu et al. 2018.	 Tolerance and resistance - Disease resistance	Os11g0225300	LOC_Os11g11810.1		0		GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0002238 - response to molecule of fungal origin, GO:0016046 - detection of fungus, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
9411	_	SasPKA1, PKA1	_		_		11	serine/threonine kinase related protein	 Biochemical character				0				
9412	_	Os11gRGA1	_	R-gene analog 1	_		11	AB604615. NBS-LRR protein.	 Tolerance and resistance				0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9413	_	Os11gRGA2	_	R-gene analog 2	_		11	AB604616. NBS-LRR protein.	 Tolerance and resistance				0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9414	_	Os11gRGA6	_	R-gene analog 6	_		11	NBS-LRR protein.					0				
9415	_	Os11gRGA7	_	R-gene analog 7	_		11	NBS-LRR protein. AB604631, AB604632, AB604633, AB604634, AB604635.	 Tolerance and resistance				0		GO:0043531 - ADP binding, GO:0006952 - defense response		
9416	_	Os11gRGA8	_	R-gene analog 8	_		11	NBS-LRR protein. AB604636, AB604637, AB604638, AB604639.	 Tolerance and resistance				0		GO:0043531 - ADP binding, GO:0006952 - defense response		
9417	_	Os11gRGA9	_	R-gene analog 9	_		11	NBS-LRR protein. AB604640, AB604641, AB604642, AB604643.	 Tolerance and resistance				0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9418	_	Os11gRGA10	_	R-gene analog 10	_		11	NBS-LRR protein. AB604644, AB604645.					0				
9419	_	Os11gRGA11	_	R-gene analog 11	_		11	NBS-LRR protein.					0				
9420	_	Os11gRGA12	_	R-gene analog 12	_		11	NBS-LRR protein.					0				
9421	_	Os11gRGAC	_	R-gene analog C	_		11	NBS-LRR protein. AB604611, AB604612, AB604613, AB604614.	 Tolerance and resistance				0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9422	EXPA30	OsEXPA30	ALPHA-EXPANSIN 30	expansin A30	ALPHA-EXPANSIN 30				 Vegetative organ - Root				0				
9423	RTH1	OsAPY, RTH1	ROOT HAIRLESS 1	apyrase, root hairless 1, ATP-diphosphohydrolase	ATP-DIPHOSPHOHYDROLASE	rth1	7		 Vegetative organ - Root	Os07g0682800	LOC_Os07g48430.4, LOC_Os07g48430.3, LOC_Os07g48430.2, LOC_Os07g48430.1		0				
9424	_	OsAPYL	_	apyrase-like	_			AF358764.					0				
9425	RHL1	RHL1, OsRHL1	ROOT HAIRLESS 1	root hairless 1	BHLH TRANSCRIPTION FACTOR	rhl1-1, rhl1-2		bHLH transcription factor.					0				
9426	PDR5	ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5	PLEIOTROPIC DRUG RESISTANCE 5	ABC transporter G43, pleiotropic drug resistance 5, ABC transporter superfamily ABCG subgroup member 43	PLEIOTROPIC DRUG RESISTANCE 5		7	cadmium tolerance. Q8GU86. AJ535050.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0522500	LOC_Os07g33780.1		0		GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006810 - transport		
9427	IRT2	OsIRT2, OsIRT1	IRON-REGULATED TRANSPORTER 2	IRON-REGULATED TRANSPORTER2	IRON-REGULATED TRANSPORTER 2		3	AB126086. Q6L8G1. D49213. CI162465. OsIRT1 in Kobayashi et al. 2005. TO:0006049: iron concentration. TO:0006053: zinc concentration.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0667300	LOC_Os03g46454.1		0		GO:0005385 - zinc ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0006826 - iron ion transport, GO:0016021 - integral to membrane, GO:0055072 - iron ion homeostasis		
9428	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3	GRAIN CD CONCENTRATION ON CHROMOSOME 7	heavy metal ATPase 3, heavy metal transporter 3, heavy metal P-Type ATPase 3, heavy metal P1B-ATPase 3, grain Cd concentration on chromosome 7	HEAVY METAL ATPASE 3	GCC7PA64s, GCC793-11	7	AB559518, AB559519, AB559520, AB559521, AB559522. P1B-ATPase transporter. a vacuolar cadmium (Cd) transporter. TO:0006059: cadmium concentration. TO:0006059: cadmium content trait. GO:0071585 detoxification of cadmium ion. 	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0232900	LOC_Os07g12900.1		0		GO:0046873 - metal ion transmembrane transporter activity, GO:0006754 - ATP biosynthetic process, GO:0005524 - ATP binding, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0046686 - response to cadmium ion, GO:0007034 - vacuolar transport		
9443	_	OsVHA-A	_	Vacuolar H-ATPase A subunit	_			TP H+-ATPase.	 Biochemical character				0				
9444	_	OSA1	_	plasma membrane H(+)-ATPase 1, PM H+-ATPase 1	_				 Biochemical character				0				
9445	_	OSA2	_	plasma membrane H(+)-ATPase 2, PM H+-ATPase 2	_				 Biochemical character				0				
9446	_	OsLOL1, OsSTA289, OsLSD1	_	LSD1-like 1	_		12	zinc-finger protein. Q2QMB3. ABA99369. LOC_Os12g41700. a mature anther-preferentially expressed gene. one of the five AtLSD1 homologs in rice genome. OsLSD1 in Huang et al. 2015.	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0611000	LOC_Os12g41700.1		0		GO:0005634 - nucleus		PO:0009066 - anther 
9447	_	OsLSD1	_		_			zinc-finger protein.					0				
9448	_	OsiWAK1, WAK1	_	Oryza sativa indica WAK1, Oryza sativa indica Wall-Associated kinase 1	_		11	AF353091. LOC_Os11g46860. Os11g0691240 (in Rap2 (build4)).		Os11g0691100 	LOC_Os11g46860.1		0		GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
9449	RDCP1	OsRDCP1	RING DOMAIN-CONTAINING PROTEIN 1	RING domain-containing protein 1, RING domain containing protein 1	RING DOMAIN-CONTAINING PROTEIN 1	osrdcp1	4	RING domain-containing E3 ubiquitin ligase.	 Tolerance and resistance - Stress tolerance	Os04g0530500	LOC_Os04g44820.2, LOC_Os04g44820.1		0		GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
9450	RDCP2	OsRDCP2	RING DOMAIN-CONTAINING PROTEIN 2	RING domain-containing protein 2	RING DOMAIN-CONTAINING PROTEIN 2		2	RING Finger Protein (OsRFP). LOC_Os02g42690.		Os02g0639800 	LOC_Os02g42690.3, LOC_Os02g42690.2, LOC_Os02g42690.1		0		GO:0008270 - zinc ion binding		
9451	RDCP3	OsRDCP3	RING DOMAIN-CONTAINING PROTEIN 3	RING domain-containing protein 3	RING DOMAIN-CONTAINING PROTEIN 3		1			Os01g0766200 	LOC_Os01g56070.4, LOC_Os01g56070.3, LOC_Os01g56070.2, LOC_Os01g56070.1		0		GO:0008270 - zinc ion binding		
9452	RDCP4	OsRDCP4	RING DOMAIN-CONTAINING PROTEIN 4	RING domain-containing protein 4	RING DOMAIN-CONTAINING PROTEIN 4		3			Os03g0678400 	LOC_Os03g47500.2, LOC_Os03g47500.1		0		GO:0008270 - zinc ion binding		
9453	RDCP5	OsRDCP5	RING DOMAIN-CONTAINING PROTEIN 5	RING domain-containing protein 5	RING DOMAIN-CONTAINING PROTEIN 5		12			Os12g0636000 	LOC_Os12g43930.1		0		GO:0008270 - zinc ion binding		
9456	PUB15	OsPUB15	PUB15	Plant U-Box 15	E3 UBIQUITIN LIGASE			E3 ubiquitin ligase.	 Tolerance and resistance - Stress tolerance				0			TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	
9457	SODCC2	Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2	CYTOSOLIC SUPEROXIDASE DISMUTASE 2	"Cu/Zn-superoxide dismutase, superoxide dismutase B, copper/zinc-superoxide dismutase, \"Cu, Zn superoxide dismutase\", cytosolic copper/zinc-superoxide dismutase 2, \"Superoxide dismutase (Cu-Zn) 4, cytosolic\", Cu-dependent SOD 1.1"	CYTOSOLIC SUPEROXIDASE DISMUTASE 2		7	LOC_Os07g46990. D01000. P28757. L19434. D22653. Superoxide dismutase (Cu-Zn) 4, cytosolic in Sasaki et al. 1994. ROS-scavenging enzyme. OssodCc1 in Wu et al. 2014. miR398a  target. targeted by miR398 family members (Qin et al. 2017). Cu/ZnSOD2 in Huang et al. 2018.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os07g0665200	LOC_Os07g46990.2, LOC_Os07g46990.1		0		GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0005737 - cytoplasm, GO:0005507 - copper ion binding, GO:0046688 - response to copper ion, GO:0042742 - defense response to bacterium, GO:0010193 - response to ozone, GO:0010039 - response to iron ion, GO:0008270 - zinc ion binding, GO:0019430 - removal of superoxide radicals, GO:0004784 - superoxide dismutase activity, GO:0009845 - seed germination, GO:0012501 - programmed cell death	TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000040 - panicle length, TO:0002657 - oxidative stress, TO:0000447 - filled grain number	PO:0007057 - 0 seed germination stage , PO:0005360 - aleurone layer 
9458	_	OsCatC, CatC, OsCAT	_	catalase C	_			AB020502.	 Biochemical character,  Tolerance and resistance - Stress tolerance				0		GO:0020037 - heme binding, GO:0004096 - catalase activity, GO:0006979 - response to oxidative stress	TO:0002657 - oxidative stress	
9459	GSTL1	OsGSTL1	LAMBDA GLUTATHIONE S-TRANSFERASE 1	lambda class glutathione S-transferase 1, glutathione S-transferase lambda 1	LAMBDA GLUTATHIONE S-TRANSFERASE 1		3	AF237487. Q10N44. DQ319906 (promoter sequence).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0283200 	LOC_Os03g17480.1		0			TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000712 - sulfonylurea herbicide sensitivity	
9460	GSTL2	OsGSTL2	LAMBDA GLUTATHIONE S-TRANSFERASE 2	lambda class glutathione S-transferase 2	LAMBDA GLUTATHIONE S-TRANSFERASE 2		3	DQ323738. A1XBB7.	 Biochemical character	Os03g0283100 	LOC_Os03g17470.1		0				
9461	GSTL3	OsGSTL3	LAMBDA GLUTATHIONE S-TRANSFERASE 3	lambda class glutathione S-transferase 3	LAMBDA GLUTATHIONE S-TRANSFERASE 3		3	AY332468.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0283000	LOC_Os03g17460.1		0		GO:0004364 - glutathione transferase activity, GO:0016740 - transferase activity, GO:0046688 - response to copper ion, GO:0005737 - cytoplasm, GO:0006749 - glutathione metabolic process	TO:0000021 - copper sensitivity	
9462	_	OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAP3, MPK14, MPK3	_	MAP kinase 14	_	mapk14	2	AF216317, AF241166, AU055782. Q6Z437. OsMPK3 in Shin et al. 2014, Nanda et al. 2018. MAPK14 in Mao et al. 2019.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os02g0148100	LOC_Os02g05480.2, LOC_Os02g05480.1		0		GO:2000033 - regulation of seed dormancy, GO:0009611 - response to wounding, GO:0009814 - defense response, incompatible interaction, GO:0000165 - MAPKKK cascade, GO:0042542 - response to hydrogen peroxide, GO:0005524 - ATP binding, GO:0004707 - MAP kinase activity, GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000253 - seed dormancy, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance, TO:0000401 - plant growth hormone sensitivity	
9463	_	OsMAPK44	_		_				 Biochemical character				0				
9464	_	Oswjumk1	_		_				 Biochemical character				0				
9465	_	OsCERK	_	ceramide kinase	_		2	FJ765452.	 Biochemical character	Os02g0656200	LOC_Os02g43912.1, LOC_Os02g43906.1		0		GO:0004143 - diacylglycerol kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway		
9466	RPP31	OsRPP31, OsGSTF6, GSTF6	PHLOEM PROTEIN 31	31 kDa rice phloem protein, phloem specific glutathione S-transferase, PHI GLUTATHIONE S-TRANSFERASE 6	PHLOEM PROTEIN 31		10	AB103350. LOC_Os10g39740. RPP31 is present in the rice phloem sap as an abundant protein, and is localized only to the phloem region of the leaves.	 Biochemical character	Os10g0543800	LOC_Os10g39740.1		0		GO:0016740 - transferase activity		
9467	GSTU3	OsGSTU3, OsGSTU29, GSTU29	TAU GLUTATHIONE S-TRANSFERASE 3	tau class glutathione S-trasferase 3, tau glutathione S-trasferase 29	TAU GLUTATHIONE S-TRANSFERASE 3		10	AY271620, AF309379, OsGSTU3 and OsGSTU4 are heavy metal and hypoxic stress induced and are differentially salt stress-responsive in rice roots. AC091680: OSJNBa0034L04.7. LOC_Os10g38489.	 Biochemical character	Os10g0528400	LOC_Os10g38489.1		0		GO:0016740 - transferase activity		
9468	GSTU4	OsGSTU4	TAU GLUTATHIONE S-TRANSFERASE 4	tau class glutathione S-trasferase 4	TAU GLUTATHIONE S-TRANSFERASE 4		10	AY271619, AF309378. AC091680: OSJNBa0034L04.8. 	 Biochemical character	Os10g0528300			0		GO:0016740 - transferase activity		
9469	_	OsGPCR	_		_		11			Os11g0546100	LOC_Os11g34360.1		0		GO:0016021 - integral to membrane, GO:0004872 - receptor activity		
9470	ZIFL1	OsZIFL1	ZINC-INDUCED FACILITATOR-LIKE 1	zinc-induced facilitator-like 1	ZINC-INDUCED FACILITATOR-LIKE 1		1			Os01g0268100 	LOC_Os01g16260.3, LOC_Os01g16260.2, LOC_Os01g16260.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
9471	ZIFL2	OsZIFL2, Os-mfs1, mfs1	ZINC-INDUCED FACILITATOR-LIKE 2	zinc-induced facilitator-like 2, major facilitator superfamily antiporter 1	ZINC-INDUCED FACILITATOR-LIKE 2		1	AF543418.		Os01g0279400 	LOC_Os01g17214.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
9472	ZIFL3	OsZIFL3	ZINC-INDUCED FACILITATOR-LIKE 3	zinc-induced facilitator-like 3	ZINC-INDUCED FACILITATOR-LIKE 3		7			Os07g0180700	LOC_Os07g08300.5, LOC_Os07g08300.4, LOC_Os07g08300.3, LOC_Os07g08300.2, LOC_Os07g08300.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9474	ZIFL5	OsZIFL5, OsTOM2, TOM2	ZINC-INDUCED FACILITATOR-LIKE 5	zinc-induced facilitator-like 5, Transporter of mugineic acids 2	ZINC-INDUCED FACILITATOR-LIKE 5		11	Efflux transporter of phytosiderophore. LOC_Os11g04030. Major facilitator superfamily antiporter.	 Biochemical character	Os11g0135000	LOC_Os11g04030.4, LOC_Os11g04030.3, LOC_Os11g04030.2, LOC_Os11g04030.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
9475	ZIFL6	OsZIFL6	ZINC-INDUCED FACILITATOR-LIKE 6	zinc-induced facilitator-like 6	ZINC-INDUCED FACILITATOR-LIKE 6		11			Os11g0135300	LOC_Os11g04060.1		0		GO:0042254 - ribosome biogenesis, GO:0005840 - ribosome		
9476	ZIFL7	OsZIFL7	ZINC-INDUCED FACILITATOR-LIKE 7	zinc-induced facilitator-like 7	ZINC-INDUCED FACILITATOR-LIKE 7		11			Os11g0135900	LOC_Os11g04104.3, LOC_Os11g04104.2, LOC_Os11g04104.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9477	ZIFL8	OsZIFL8	ZINC-INDUCED FACILITATOR-LIKE 8	zinc-induced facilitator-like 8	ZINC-INDUCED FACILITATOR-LIKE 8		11			Os11g0136400	LOC_Os11g04150.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
9478	ZIFL9	OsZIFL9	ZINC-INDUCED FACILITATOR-LIKE 9	zinc-induced facilitator-like 9	ZINC-INDUCED FACILITATOR-LIKE 9		12			Os12g0132500	LOC_Os12g03830.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9479	ZIFL10	OsZIFL10, Os-mfs2, mfs2	ZINC-INDUCED FACILITATOR-LIKE 10	zinc-induced facilitator-like 10, major facilitator superfamily antiporter 2	ZINC-INDUCED FACILITATOR-LIKE 10		12	AF543419. LOC_Os12g03860. Major facilitator superfamily antiporter.	 Biochemical character	Os12g0132800	LOC_Os12g03860.7, LOC_Os12g03860.6, LOC_Os12g03860.5, LOC_Os12g03860.4, LOC_Os12g03860.3, LOC_Os12g03860.2, LOC_Os12g03860.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
9480	ZIFL11	OsZIFL11	ZINC-INDUCED FACILITATOR-LIKE 11	zinc-induced facilitator-like 11	ZINC-INDUCED FACILITATOR-LIKE 11		12			Os12g0133000	LOC_Os12g03870.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9481	ZIFL12	OsZIFL12	ZINC-INDUCED FACILITATOR-LIKE 12	zinc-induced facilitator-like 12	ZINC-INDUCED FACILITATOR-LIKE 12		12			Os12g0133100	LOC_Os12g03899.4, LOC_Os12g03899.3, LOC_Os12g03899.2, LOC_Os12g03899.1		0				
9482	ZIFL13	OsZIFL13	ZINC-INDUCED FACILITATOR-LIKE 13	zinc-induced facilitator-like 13	ZINC-INDUCED FACILITATOR-LIKE 13		12			Os12g0133300	LOC_Os12g03950.1		0				
9483	_	OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56	_	basic helix-loop-helix protein 056	_		1	iron-regulated bHLH transcription factor. BR000688. Positive transcriptional regulator. LOC_Os01g72370.1 TO:0006049: iron concentration. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0952800	LOC_Os01g72370.1, LOC_Os01g72370.3, LOC_Os01g72370.2		0		GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0010106 - cellular response to iron ion starvation, GO:0055072 - iron ion homeostasis, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0046688 - response to copper ion, GO:0009751 - response to salicylic acid stimulus	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000021 - copper sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0009006 - shoot system , PO:0009005 - root 
9484	_	OsDSR-1, DSR-1	_	drought stress response-1	_		10	OsSCS1 paralog. LOC_Os10g09850.	 Tolerance and resistance - Stress tolerance	Os10g0177200	LOC_Os10g09850.1		0		GO:0005509 - calcium ion binding		
9485	_	OsbHLH148, bHLH148	_	basic helix-loop-helix protein 148	_		3	LOC_Os03g53020. HQ858871. bHLH transcription factor.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0741100	LOC_Os03g53020.1		0		GO:0030528 - transcription regulator activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	
9486	TIFY11D	OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12	TIFY GENE 11D	Jasmonate ZIM-domain protein 1, Jasmonate ZIM-domain protein 12	TIFY DOMAIN PROTEIN 11d		10	Q7XEZ1. XB21 interacting protein (XB21IP). OsJAZ12 in Ye et al. (2009) and in Yamada et al. (2012), Wang et al. 2019, Kashihara et al. 2019. OsJAZ1 in Seo et al.(2011) and in Lee et al.(2013). GO: 1903507: negative regulation of nucleic acid-templates transcription. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os10g0392400	LOC_Os10g25290.1		0		GO:0009753 - response to jasmonic acid stimulus, GO:0003714 - transcription corepressor activity, GO:0031347 - regulation of defense response, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009611 - response to wounding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus	TO:0002757 - flag leaf length, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000590 - grain weight, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
9487	_	OsbHLH1	_	basic helix-loop-helix protein 1	_								0				
9488	TIFY11C	OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1	TIFY GENE 11C	Jasmonate ZIM-domain protein 2, Jasmonate ZIM-domain protein 11	TIFY-DOMAIN PROTEIN 11C		3	Q8GRS2. OsJAZ 11 in Ye et al.(2009), Yamada et al. 2012, Toda et al. 2013, Wang et al. 2019, Kashihara et al. 2019. OsJAZ2 in Seo et al.(2011) Shimizu et al. 2013 and in Lee et al. (2013). OsJAZ1 in Aung et al. 2018. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0180900	LOC_Os03g08320.1		0		GO:0005634 - nucleus, GO:0031347 - regulation of defense response, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus	TO:0002757 - flag leaf length, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000172 - jasmonic acid sensitivity	
9489	TIFY11A	OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6	TIFY GENE 11A	Jasmonate ZIM-domain protein 3, Jasmonate ZIM-domain protein 9	TIFY-DOMAIN PROTEIN 11A		3	Q8GSI0. OsJAZ9 in Ye et al.(2009), Yamada et al.(2012), Toda et al. 2013, Ogawa et al. 2017, Xu et al. 2018, Kashihara et al. 2019. OsJAZ 3 in Seo et al. (2011), in Shimizu et al. 2013 and in Lee et al. (2013). OsJAZ6 in Chen et al. 2018. GO:2000022: regulation of jasmonic acid mediated signaling pathway. 	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0180800	LOC_Os03g08310.1		0		GO:0031347 - regulation of defense response, GO:0005634 - nucleus, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000576 - stem length, TO:0002736 - flower number, TO:0000137 - days to heading, TO:0000180 - spikelet fertility, TO:0000207 - plant height, TO:0000040 - panicle length	
9490	TIFY11B	OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b	TIFY GENE 11B	Jasmonate ZIM-domain protein 4, Jasmonate ZIM-domain protein 10	TIFY-DOMAIN PROTEIN 11B		3	OsJAZ10 in Ye et al. (2009), Yamada et al. (2012), Uji et al. 2016. OsJAZ4 in Seo et al.(2011), Shimizu et al. 2013, Lee et al. (2013), Wang et al. 2019, Kashihara et al. 2019. Overexpression of TIFY11b increases grain size (Hakata et al. 2012). GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0181100	LOC_Os03g08330.1		0		GO:0005634 - nucleus, GO:0031347 - regulation of defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding	TO:0002757 - flag leaf length, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000172 - jasmonic acid sensitivity	
9491	TIFY10A	OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A	TIFY GENE 10A	Jasmonate ZIM-domain protein 5, Jasmonate ZIM-domain protein 6	TIFY-DOMAIN PROTEIN 5		3	Q84R94. OsJAZ6 in Ye et al. (2009), Kashihara et al. 2019. OsJAZ5 in Seo et al. (2011), Shimizu et al. 2013 and Lee et al. (2013). AK287757 in Yamada et al. (2012). GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0402800	LOC_Os03g28940.2, LOC_Os03g28940.1		0		GO:0005634 - nucleus, GO:0031347 - regulation of defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0051607 - defense response to virus	TO:0002757 - flag leaf length, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000590 - grain weight, TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance	
9492	TIFY10B	OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7	TIFY GENE 10B	Jasmonate ZIM-domain protein 6, Jasmonate ZIM-domain protein 7.	TIFY-DOMAIN PROTEIN 10B		7	Q8H395. OsJAZ7 in Ye et al. (2009), Yamada et al. (2012), Wang et al. 2019, Kashihara et al. 2019. OsJAZ6 in Seo et al. (2011) and in Lee et al. (2013). BF889459. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0615200	LOC_Os07g42370.3, LOC_Os07g42370.2, LOC_Os07g42370.1		0		GO:0005634 - nucleus, GO:0031347 - regulation of defense response, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus	TO:0002757 - flag leaf length, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000590 - grain weight, TO:0000172 - jasmonic acid sensitivity	
9493	TIFY10C	OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8	TIFY GENE 10C	Jasmonate ZIM-domain protein 7, Jasmonate ZIM-domain protein 8.	TIFY-DOMAIN PROTEIN 10C		9	Q69P94. OsJAZ8 in Ye et al. (2009), Toda et al. 2013, Yamada et al. (2012) , Svyatyna et al. (2013), Taniguchi et al. (2013), Uji et al. 2016 & 2017, Wang et al. 2019, Kashihara et al. 2019. OsJAZ7 in Seo et al. (2011) and Lee et al. (2013). GO:1900056: negative regulation of leaf senescence. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0439200	LOC_Os09g26780.1		0		GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0031347 - regulation of defense response, GO:0006952 - defense response, GO:0009611 - response to wounding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010150 - leaf senescence	TO:0002757 - flag leaf length, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000590 - grain weight, TO:0000172 - jasmonic acid sensitivity, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content	PO:0001054 - 4 leaf senescence stage 
9494	TIFY6B	OsJAZ8, OsJAZ 4, OsJAZ4, OsTIFY6b	TIFY GENE 6B	Jasmonate ZIM-domain protein 8, Jasmonate ZIM-domain protein 4.	TIFY-DOMAIN PROTEIN 6B		9	Q6ES51. OsJAZ4 in Ye et al. (2009) and in Yamada et al. (2012), Kashihara et al. 2019. OsJAZ8 in Seo et al. (2011) and Lee et al. (2013). GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance	Os09g0401300	LOC_Os09g23650.1, LOC_Os09g23660.2, LOC_Os09g23660.1		0		GO:0005634 - nucleus, GO:0009611 - response to wounding, GO:0031347 - regulation of defense response		
9495	TIFY6A	OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a	TIFY GENE 6A	Jasmonate ZIM-domain protein 9, Jasmonate ZIM-domain protein 3, Jasmonate Zim-Domain3	TIFY-DOMAIN PROTEIN 6A		8	Q6ZJU3. OsJAZ3 in Ye et al. (2009), Yamada et al. 2012, Wang et al. 2019, Kashihara et al. 2019. OsJAZ9 in Seo et al. (2011) and in Lee et al. (2913). HQ858803. ZIM transcription factor. GO:2000022:  regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance	Os08g0428400	LOC_Os08g33160.2, LOC_Os08g33160.1		0		GO:0005634 - nucleus, GO:0009611 - response to wounding, GO:0031347 - regulation of defense response		
9496	EG2	OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2	EXTRA GLUME 2	Jasmonate ZIM-domain protein 1, Jasmonate ZIM-domain protein 10, extra glume 2, TIFY gene 3	TIFY-DOMAIN PROTEIN 3	eg2, eg2-1D, osjaz1-1D, jaz1, osjaz1	4	Q7XPM8. OsJAZ 1 in Ye et al. (2009), Yamada et al. (2012), Tian et al. 2019, Kashihara et al. 2019. OsJAZ10 in Seo et al. (2011) and Lee et al. (2013). a JA signalling repressor. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0653000	LOC_Os04g55920.1, LOC_Os04g55920.2, LOC_Os04g55920.5		0		GO:0031347 - regulation of defense response, GO:0048449 - floral organ formation, GO:0010582 - floral meristem determinacy, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0000172 - jasmonic acid sensitivity, TO:0000657 - spikelet anatomy and morphology trait, TO:0000227 - root length, TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000576 - stem length, TO:0002736 - flower number, TO:0000137 - days to heading, TO:0000180 - spikelet fertility, TO:0000040 - panicle length	
9497	TIFY9	OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ11/TIFY9	TIFY GENE 9	Jasmonate ZIM-domain protein 5, Jasmonate ZIM-domain protein 11.	TIFY-DOMAIN PROTEIN 9		4	Q7XV97. OsJAZ5 in Ye et al. (2009), Kashihara et al. 2019.. OsJAZ11 in Seo et al. (2011) and in Lee et al. (2013). AK240828 in Yamada et al. (2012). GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0395800	LOC_Os04g32480.1		0		GO:0005634 - nucleus, GO:0031347 - regulation of defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding	TO:0002757 - flag leaf length, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000590 - grain weight, TO:0000172 - jasmonic acid sensitivity	
9498	TIFY8	OsJAZ12, OsTIFY8, OsSTA75	TIFY GENE 8	Jasmonate ZIM-domain protein 12	TIFY-DOMAIN PROTEIN 8		2	OsJAZ12 in Seo et al. (2011) and in Lee et al. (2013). LOC_Os02g49970. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0732400	LOC_Os02g49970.1		0				PO:0009066 - anther 
9499	ERF101	OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6	ETHYLENE RESPONSE FACTOR 101	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 101, drought-responsive ethylene response factor 6, drought-responsive ERF 6, ethylene response factor 101, APETALA2/ethylene-responsive element binding protein 89	ETHYLENE RESPONSE FACTOR 101	oserf101	4	AP2 transcription factor	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0398000	LOC_Os04g32620.1		0		GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0006351 - transcription, DNA-dependent, GO:0048653 - anther development	TO:0000095 - osmotic response sensitivity, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0001004 - anther development stage , PO:0020048 - microspore , PO:0025313 - tapetum , PO:0009046 - flower 
9500	DREB1G	OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1G	Dehydration-responsive element-binding protein 1G, ethylene response factor 25, APETALA2/ethylene-responsive element binding protein 138	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1G		2	Q6EP77. Os02g0677300 may be the best candidate gene in this region (qLOP2 and qPSR2-1 loci) (Xiao et al. 2014). OsDREB1I in Mao et al. 2019.	 Tolerance and resistance - Stress tolerance	Os02g0677300	LOC_Os02g45450.1		0		GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0020141 - stem node , PO:0020104 - leaf sheath , PO:0009005 - root 
9501	_	UspA, OsUspA	_	universal stress-induced protein A	_		5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0355400	LOC_Os05g28740.1		0		GO:0050832 - defense response to fungus, GO:0006950 - response to stress	TO:0000074 - blast disease	
9502	GDH1	OsGDH1	GLUTAMATE DEHYDROGENASE 1	glutamate dehydrogenase 1, glutamate dehydrogenase (NAD(P)+)	GLUTAMATE DEHYDROGENASE 1		3	AB024962. D15259. Q852M0.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0794500 	LOC_Os03g58040.3, LOC_Os03g58040.2, LOC_Os03g58040.1		0		GO:0004352 - glutamate dehydrogenase activity, GO:0046686 - response to cadmium ion, GO:0050832 - defense response to fungus, GO:0004353 - glutamate dehydrogenase [NAD(P)+] activity, GO:0005507 - copper ion binding, GO:0005524 - ATP binding, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0009651 - response to salt stress, GO:0006520 - cellular amino acid metabolic process, GO:0009646 - response to absence of light, GO:0005739 - mitochondrion, GO:0050897 - cobalt ion binding, GO:0008270 - zinc ion binding	TO:0000074 - blast disease	
9503	GSTF1	OsGSTF1, RGSI	PHI GLUTATHIONE S-TRANSFERASE 1		PHI GLUTATHIONE S-TRANSFERASE 1		1	AJ002380	 Biochemical character	Os01g0371200	LOC_Os01g27360.1		0				
9504	GSTF2	OsGSTF2, RGSTII	PHI GLUTATHIONE S-TRANSFERASE 2	glutathione S-transferase II	PHI GLUTATHIONE S-TRANSFERASE 2		1	AJ002381, AF062403	 Biochemical character	Os01g0764000	LOC_Os01g55830.1		0				
9505	GSTF3	OsGSTF3, gstf3	PHI GLUTATHIONE S-TRANSFERASE 3		PHI GLUTATHIONE S-TRANSFERASE 3		3	AF309384. KC610952-KC610963 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os03g0135300	LOC_Os03g04260.1		0				
9506	GSTF4	OsGSTF4	PHI GLUTATHIONE S-TRANSFERASE 4		PHI GLUTATHIONE S-TRANSFERASE 4		1	AF309383	 Biochemical character	Os01g0933900	LOC_Os01g70770.1		0				
9507	GSTF5	OsGSTF5, OsGST F5	PHI GLUTATHIONE S-TRANSFERASE 5	Glutathione transferase I, Phi-class glutathione S-transferase F5, phi class GST F5	PHI GLUTATHIONE S-TRANSFERASE 5		1	AF309382. D16078. Glutathione transferase I in Sasaki et al. 1994.	 Biochemical character	Os01g0369700	LOC_Os01g27210.1		0				
9509	GSTF7	OsGSTF7	PHI GLUTATHIONE S-TRANSFERASE 7		PHI GLUTATHIONE S-TRANSFERASE 7		1		 Biochemical character	Os01g0370200	LOC_Os01g27260.1		0				
9510	GSTF8	OsGSTF8	PHI GLUTATHIONE S-TRANSFERASE 8		PHI GLUTATHIONE S-TRANSFERASE 8		1		 Biochemical character	Os01g0370900	LOC_Os01g27340.1		0				
9511	GSTF9	OsGSTF9	PHI GLUTATHIONE S-TRANSFERASE 9		PHI GLUTATHIONE S-TRANSFERASE 9		1		 Biochemical character	Os01g0371400	LOC_Os01g27380.1		0				
9512	GSTF10	OsGSTF10	PHI GLUTATHIONE S-TRANSFERASE 10		PHI GLUTATHIONE S-TRANSFERASE 10		1		 Biochemical character	Os01g0371500	LOC_Os01g27390.1		0				
9513	GSTF11	OsGSTF11, OsGST4	PHI GLUTATHIONE S-TRANSFERASE 11		PHI GLUTATHIONE S-TRANSFERASE 11	osgst4	1	It is not clear that GSTF11 reported in Soranzo (2004) is the same as the one in Jain (2010). OsGST4 in Xu et al. 2018. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0353400	LOC_Os01g25100.1		0		GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
9514	GSTF12	OsGSTF12, OsEnS-7	PHI GLUTATHIONE S-TRANSFERASE 12	endosperm-specific gene 7	PHI GLUTATHIONE S-TRANSFERASE 12		1	LOC_Os01g27630.	 Biochemical character	Os01g0374000	LOC_Os01g27630.1		0		GO:0016740 - transferase activity		
9515	GSTF13	OsGSTF13	PHI GLUTATHIONE S-TRANSFERASE 13		PHI GLUTATHIONE S-TRANSFERASE 13		1	GSTF13 was reported as pseudogene in Soranzo (2004).	 Biochemical character	Os01g0372400	LOC_Os01g27480.1		0				
9516	GSTF14	OsGSTF14, GST14	PHI GLUTATHIONE S-TRANSFERASE 14	glutathione S-transferase 14	PHI GLUTATHIONE S-TRANSFERASE 14		3	AY533122	 Biochemical character	Os03g0134900	LOC_Os03g04220.1		0		GO:0005737 - cytoplasm, GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity, GO:0043295 - glutathione binding		
9517	GSTF15	OsGSTF15	PHI GLUTATHIONE S-TRANSFERASE 15		PHI GLUTATHIONE S-TRANSFERASE 15		3	AY5333123	 Biochemical character	Os03g0135100	LOC_Os03g04240.1		0				
9518	GSTF16	OsGSTF16	PHI GLUTATHIONE S-TRANSFERASE 16		PHI GLUTATHIONE S-TRANSFERASE 16		3	It is not clear that GSTF16 reported in Soranzo (2004) is the same as the one in Jain (2010).	 Biochemical character	Os03g0135200	LOC_Os03g04250.1		0				
9519	GSTF17	OsGSTF17	PHI GLUTATHIONE S-TRANSFERASE 17		PHI GLUTATHIONE S-TRANSFERASE 17		5		 Biochemical character	Os05g0148900	LOC_Os05g05620.1		0				
9520	GSTT1	OsGSTT1	THETA GLUTATHIONE S-TRANSFERASE 1		THETA GLUTATHIONE S-TRANSFERASE 1		11	AF402793	 Biochemical character	Os11g0588300	LOC_Os11g37730.2, LOC_Os11g37730.1		0				
9521	GSTU1	OsGSTU1	TAU GLUTATHIONE S-TRANSFERASE 1	glutathione transferase U1	TAU GLUTATHIONE S-TRANSFERASE 1		3	LOC_Os03g57200. Q10CE7. AF050102. D16077. Auxin-induced protein.	 Biochemical character	Os03g0785900	LOC_Os03g57200.1		0		GO:0009407 - toxin catabolic process, GO:0005737 - cytoplasm, GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity		
9522	GSTU2	OsGSTU2, ParC	TAU GLUTATHIONE S-TRANSFERASE 2		TAU GLUTATHIONE S-TRANSFERASE 2		10	AF309380. D16067. AC091680: OSJNBa0034L04.3. LOC_Os10g38630.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0529800	LOC_Os10g38630.2, LOC_Os10g38630.1		0		GO:0046688 - response to copper ion, GO:0016740 - transferase activity	TO:0000021 - copper sensitivity	
9523	GSTU5	OsGSTU5	TAU GLUTATHIONE S-TRANSFERASE 5	tau class glutathione S-transferase 5, glutathione transferase U5	TAU GLUTATHIONE S-TRANSFERASE 5		9	AF309377. glutathione-s-transferase (GST). LOC_Os09g20220.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os09g0367700	LOC_Os09g20220.1		0		GO:0006952 - defense response, GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process, GO:0006979 - response to oxidative stress, GO:0004364 - glutathione transferase activity, GO:0010038 - response to metal ion, GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion, GO:0005737 - cytoplasm	TO:0000168 - abiotic stress trait, TO:0000080 - micronutrient sensitivity, TO:0000179 - biotic stress trait	
9524	GSTU6	OsGSTU6	TAU GLUTATHIONE S-TRANSFERASE 6		TAU GLUTATHIONE S-TRANSFERASE 6		1	AF309376	 Biochemical character	Os01g0558100	LOC_Os01g37750.1		0				
9525	GSTU7	OsGSTU7	TAU GLUTATHIONE S-TRANSFERASE 7		TAU GLUTATHIONE S-TRANSFERASE 7		1	GSTU7 reported in Soranzo (2004) may be the same as GSTU18.	 Biochemical character	Os01g0949700	LOC_Os01g72120.1		0				
9526	GSTU8	OsGSTU8, OsGST35, GST35	TAU GLUTATHIONE S-TRANSFERASE 8	Glutathione S-transferase 35	TAU GLUTATHIONE S-TRANSFERASE 8		10	AF402795. AC091680: OSJNBa0034L04.4. LOC_Os10g38610. OsGST35 in Wang et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0529700	LOC_Os10g38610.1		0		GO:0009414 - response to water deprivation, GO:0016740 - transferase activity	TO:0000276 - drought tolerance	
9527	GSTU9	OsGSTU9	TAU GLUTATHIONE S-TRANSFERASE 9		TAU GLUTATHIONE S-TRANSFERASE 9		10	AF402796. D15695. Auxin-induced protein. AC091680: OSJNBa0034L04.10. LOC_Os10g38590.	 Biochemical character	Os10g0529400	LOC_Os10g38590.2, LOC_Os10g38590.1		0		GO:0016740 - transferase activity		
9528	GSTU10	OsGSTU10	TAU GLUTATHIONE S-TRANSFERASE 10	glutathione transferase U10	TAU GLUTATHIONE S-TRANSFERASE 10		10	LOC_Os10g38780. AF402797.	 Biochemical character	Os10g0531400	LOC_Os10g38780.1		0		GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity, GO:0009407 - toxin catabolic process, GO:0005737 - cytoplasm		
9529	GSTU11	OsGSTU11	TAU GLUTATHIONE S-TRANSFERASE 11	Bronze-2 protein	TAU GLUTATHIONE S-TRANSFERASE 11		7	AF402798. D22910.	 Biochemical character	Os07g0168300	LOC_Os07g07320.1		0				
9530	GSTU12	OsGSTU12, OsGSTU6.2, GSTU6.2	TAU GLUTATHIONE S-TRANSFERASE 12	Glutathione S-transferase GSTU6.2, glutathione transferase U12	TAU GLUTATHIONE S-TRANSFERASE 12		10	AF402799. AC074232: OSJNBb0005J14.1. AC091680: OSJNBa0034L04.9. LOC_Os10g38360. BF889435.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0527800	LOC_Os10g38360.1		0		GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0016740 - transferase activity, GO:0050832 - defense response to fungus, GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process, GO:0009407 - toxin catabolic process	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
9531	GSTU13	OsGSTU13	TAU GLUTATHIONE S-TRANSFERASE 13		TAU GLUTATHIONE S-TRANSFERASE 13		10	AF402800. AC091680: OSJNBa0034L04.1. LOC_Os10g38710.	 Biochemical character	Os10g0530500	LOC_Os10g38710.1		0		GO:0016740 - transferase activity		
9532	GSTU14	OsGSTU14	TAU GLUTATHIONE S-TRANSFERASE 14		TAU GLUTATHIONE S-TRANSFERASE 14		10	AF402801. AC091680: OSJNBa0034L04.6. LOC_Os10g38540.	 Biochemical character	Os10g0528900	LOC_Os10g38540.1		0		GO:0016740 - transferase activity		
9533	GSTU15	OsGSTU15	TAU GLUTATHIONE S-TRANSFERASE 15	glutathione transferase U15	TAU GLUTATHIONE S-TRANSFERASE 15		10	AF402802. AC074232: OSJNBb0005J14.24. LOC_Os10g38140. GO:0080148: negative regulation of response to water deprivation. GO:0080167: response to karrikin.	 Biochemical character	Os10g0525400	LOC_Os10g38140.1		0		GO:0006749 - glutathione metabolic process, GO:0009704 - de-etiolation, GO:0016740 - transferase activity, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0009407 - toxin catabolic process, GO:0046686 - response to cadmium ion, GO:0048527 - lateral root development, GO:0004364 - glutathione transferase activity, GO:0060416 - response to growth hormone stimulus		
9534	GSTU16	OsGSTU16	TAU GLUTATHIONE S-TRANSFERASE 16		TAU GLUTATHIONE S-TRANSFERASE 16		5	AF402803	 Biochemical character	Os05g0412800	LOC_Os05g34150.1		0				
9535	GSTU18	OsGSTU18, OsGSTU7, GSTU7	TAU GLUTATHIONE S-TRANSFERASE 18	glutathione transferase U7	TAU GLUTATHIONE S-TRANSFERASE 18		10	GSTU7 reported in Soranzo (2004) may be the same as GSTU18. AF402794, AF402805. AC091680: OSJNBa0034L04.5. LOC_Os10g38580. OsGSTU7 in Brazier-Hicks et al. 2017.	 Biochemical character	Os10g0529300	LOC_Os10g38580.1		0		GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process, GO:0016740 - transferase activity, GO:0005737 - cytoplasm, GO:0004364 - glutathione transferase activity		
9536	GSTU19	OsGSTU19, GSTU6, OsGSTU6.1, GSTU6.1	TAU GLUTATHIONE S-TRANSFERASE 19	glutathione S-transferase GSTU6, glutathione S-transferase GSTU6.16, glutathione transferase U19	TAU GLUTATHIONE S-TRANSFERASE 19		10	AC074232: OSJNBb0005J14.19. AC091680: OSJNBa0034L04.36. LOC_Os10g38340. GSTU6 in Zhao et al. 2015. photosynthetic electron transport related gene. OsGSTU6.1 in Wang et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0527400	LOC_Os10g38340.1		0		GO:0006749 - glutathione metabolic process, GO:0016740 - transferase activity, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0004364 - glutathione transferase activity, GO:0009407 - toxin catabolic process	TO:0000276 - drought tolerance	
9537	GSTU20	OsGSTU20	TAU GLUTATHIONE S-TRANSFERASE 20		TAU GLUTATHIONE S-TRANSFERASE 20		10	LOC_Os10g38350. AC074232: OSJNBb0005J14.20. AC091680: OSJNBa0034L04.37.	 Biochemical character	Os10g0527601	LOC_Os10g38350.1		0				
9538	GSTU21	OsGSTU21	TAU GLUTATHIONE S-TRANSFERASE 21		TAU GLUTATHIONE S-TRANSFERASE 21		10		 Biochemical character	Os10g0525500	LOC_Os10g38150.1		0				
9539	GSTU22	OsGSTU22	TAU GLUTATHIONE S-TRANSFERASE 22		TAU GLUTATHIONE S-TRANSFERASE 22		10	AC074232: OSJNBb0005J14.12. LOC_Os10g38160. Os10g0525600 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os10g38160		0		GO:0016740 - transferase activity		
9540	GSTU23	OsGSTU23	TAU GLUTATHIONE S-TRANSFERASE 23		TAU GLUTATHIONE S-TRANSFERASE 23		10	AC091680: OSJNBa0034L04.2. LOC_Os10g38700.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0530400	LOC_Os10g38700.1		0		GO:0006749 - glutathione metabolic process, GO:0005737 - cytoplasm, GO:0004364 - glutathione transferase activity, GO:0050832 - defense response to fungus, GO:0016740 - transferase activity	TO:0000074 - blast disease	
9542	GSTU25	OsGSTU25	TAU GLUTATHIONE S-TRANSFERASE 25		TAU GLUTATHIONE S-TRANSFERASE 25		10	AC091680: OSJNBa0034L04.15. LOC_Os10g38640. Os10g0529900 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os10g38640		0		GO:0016740 - transferase activity		
9543	GSTU26	OsGSTU26	TAU GLUTATHIONE S-TRANSFERASE 26		TAU GLUTATHIONE S-TRANSFERASE 26		10	AC091680: OSJNBa0034L04.12. LOC_Os10g38670.	 Biochemical character	Os10g0530200	LOC_Os10g38670.1		0		GO:0016740 - transferase activity		
9544	GSTU27	OsGSTU27	TAU GLUTATHIONE S-TRANSFERASE 27		TAU GLUTATHIONE S-TRANSFERASE 27		10	AC091680: OSJNBa0034L04.14. LOC_Os10g38660. Os10g0530000 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os10g38660		0		GO:0016740 - transferase activity		
9545	GSTU28	OsGSTU28	TAU GLUTATHIONE S-TRANSFERASE 28		TAU GLUTATHIONE S-TRANSFERASE 28		10	AC091680: OSJNBa0034L04.11. LOC_Os10g38690.	 Biochemical character	Os10g0530300	LOC_Os10g38690.1		0		GO:0016740 - transferase activity		
9547	GSTU30	OsGSTU30	TAU GLUTATHIONE S-TRANSFERASE 30		TAU GLUTATHIONE S-TRANSFERASE 30		10	AC091680: OSJNBa0034L04.17. LOC_Os10g38600.	 Biochemical character	Os10g0529500	LOC_Os10g38600.1		0		GO:0016740 - transferase activity		
9548	GSTU31	OsGSTU31	TAU GLUTATHIONE S-TRANSFERASE 31		TAU GLUTATHIONE S-TRANSFERASE 31		10	AY533124. LOC_Os10g38189.	 Biochemical character	Os10g0525800	LOC_Os10g38189.1		0		GO:0016740 - transferase activity		
9549	GSTU32	OsGSTU32	TAU GLUTATHIONE S-TRANSFERASE 32		TAU GLUTATHIONE S-TRANSFERASE 32		10	LOC_Os10g38314.	 Biochemical character	Os10g0527200	LOC_Os10g38314.1		0		GO:0016740 - transferase activity		
9550	GSTU33	OsGSTU33	TAU GLUTATHIONE S-TRANSFERASE 33		TAU GLUTATHIONE S-TRANSFERASE 33		10		 Biochemical character	Os10g0365200	LOC_Os10g22070.1		0				
9551	GSTU34	OsGSTU34	TAU GLUTATHIONE S-TRANSFERASE 34		TAU GLUTATHIONE S-TRANSFERASE 34		10		 Biochemical character	Os10g0395400	LOC_Os10g25590.1		0				
9552	GSTU35	OsGSTU35	TAU GLUTATHIONE S-TRANSFERASE 35	glutathione transferase U35	TAU GLUTATHIONE S-TRANSFERASE 35		1	LOC_Os01g72130. GSTU35 reported in Jain (2010) seems to be different from GSTU35 (AY533125 on chromosome 10) in Soranzo (2004).	 Biochemical character	Os01g0949750	LOC_Os01g72130.1		0		GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process, GO:0009407 - toxin catabolic process, GO:0005737 - cytoplasm		
9553	GSTU36	OsGSTU36	TAU GLUTATHIONE S-TRANSFERASE 36		TAU GLUTATHIONE S-TRANSFERASE 36		1	GSTU36 reported in Jain(2010) seems to be different from GSTU36(chromosome 3, pseudo) in Soranzo (2004).	 Biochemical character	Os01g0949800	LOC_Os01g72140.1		0				
9554	GSTU37	OsGSTU37	TAU GLUTATHIONE S-TRANSFERASE 37	tau class glutathione S-transferase 37	TAU GLUTATHIONE S-TRANSFERASE 37		1	GSTU37 reported in Jain (2010) is different from GSTU37 (chromosome 3) in Soranzo (2004). LOC_Os01g72150.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0949900	LOC_Os01g72150.1		0		GO:0010038 - response to metal ion, GO:0010288 - response to lead ion, GO:0046688 - response to copper ion, GO:0010045 - response to nickel ion, GO:0046686 - response to cadmium ion, GO:0032025 - response to cobalt ion	TO:0000021 - copper sensitivity, TO:0000080 - micronutrient sensitivity, TO:0000016 - cobalt sensitivity	
9555	GSTU38	OsGSTU38	TAU GLUTATHIONE S-TRANSFERASE 38		TAU GLUTATHIONE S-TRANSFERASE 38		6	AY541763	 Biochemical character	Os06g0227500	LOC_Os06g12290.1		0				
9556	GSTU39	OsGSTU39	TAU GLUTATHIONE S-TRANSFERASE 39	glutathione transferase U39	TAU GLUTATHIONE S-TRANSFERASE 39		1	LOC_Os01g49720.	 Biochemical character	Os01g0692100	LOC_Os01g49720.1		0		GO:0004364 - glutathione transferase activity, GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process, GO:0005737 - cytoplasm		
9557	GSTU40	OsGSTU40	TAU GLUTATHIONE S-TRANSFERASE 40		TAU GLUTATHIONE S-TRANSFERASE 40		1		 Biochemical character	Os01g0692000	LOC_Os01g49710.1		0				
9558	GSTU41	OsGSTU41	TAU GLUTATHIONE S-TRANSFERASE 41		TAU GLUTATHIONE S-TRANSFERASE 41		1		 Biochemical character	Os01g0950000	LOC_Os01g72160.1		0				
9559	GSTU42	OsGSTU42	TAU GLUTATHIONE S-TRANSFERASE 42		TAU GLUTATHIONE S-TRANSFERASE 42		1	LOC_Os01g72170.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0950300	LOC_Os01g72170.1		0		GO:0046688 - response to copper ion, GO:0006952 - defense response	TO:0000021 - copper sensitivity, TO:0000112 - disease resistance	
9560	GSTU43	OsGSTU43	TAU GLUTATHIONE S-TRANSFERASE 43		TAU GLUTATHIONE S-TRANSFERASE 43		3		 Biochemical character	Os03g0595600	LOC_Os03g39850.1		0				
9561	GSTU44	OsGSTU44	TAU GLUTATHIONE S-TRANSFERASE 44	glutathione transferase U44	TAU GLUTATHIONE S-TRANSFERASE 44		3	LOC_Os03g44170.	 Biochemical character	Os03g0643700	LOC_Os03g44170.1		0		GO:0005737 - cytoplasm, GO:0009407 - toxin catabolic process, GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process		
9562	GSTU45	OsGSTU45	TAU GLUTATHIONE S-TRANSFERASE 45		TAU GLUTATHIONE S-TRANSFERASE 45		7		 Biochemical character	Os07g0152700	LOC_Os07g05800.1		0				
9563	GSTU46	OsGSTU46	TAU GLUTATHIONE S-TRANSFERASE 46		TAU GLUTATHIONE S-TRANSFERASE 46		7		 Biochemical character	Os07g0468100	LOC_Os07g28480.1		0				
9564	GSTU47	OsGSTU47	TAU GLUTATHIONE S-TRANSFERASE 47	glutathione transferase U47	TAU GLUTATHIONE S-TRANSFERASE 47		10	LOC_Os10g34020.	 Biochemical character	Os10g0481300	LOC_Os10g34020.1		0		GO:0016740 - transferase activity		
9565	GSTU48	OsGSTU48	TAU GLUTATHIONE S-TRANSFERASE 48		TAU GLUTATHIONE S-TRANSFERASE 48		10		 Biochemical character	Os10g0530600	LOC_Os10g38720.1		0				
9566	GSTU49	OsGSTU49	TAU GLUTATHIONE S-TRANSFERASE 49		TAU GLUTATHIONE S-TRANSFERASE 49		10	LOC_Os10g38730. Os10g0530700 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os10g38730		0				
9567	GSTU50	OsGSTU50	TAU GLUTATHIONE S-TRANSFERASE 50	glutathione transferase U50	TAU GLUTATHIONE S-TRANSFERASE 50		10	LOC_Os10g38740. chilling tolerance related protein. D10861. Q06398. GO:0080167: response to karrikin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0530900	LOC_Os10g38740.1		0		GO:0009409 - response to cold, GO:0004364 - glutathione transferase activity, GO:0006950 - response to stress, GO:0009507 - chloroplast, GO:0009704 - de-etiolation, GO:0046686 - response to cadmium ion, GO:0048527 - lateral root development, GO:0060416 - response to growth hormone stimulus, GO:0006749 - glutathione metabolic process, GO:0009407 - toxin catabolic process, GO:0005737 - cytoplasm	TO:0000303 - cold tolerance	
9568	GSTU51	OsGSTU51	TAU GLUTATHIONE S-TRANSFERASE 51	glutathione transferase U51	TAU GLUTATHIONE S-TRANSFERASE 51		11	LOC_Os11g03210.	 Biochemical character		LOC_Os11g03210		0		GO:0016740 - transferase activity		
9569	GSTU52	OsGSTU52	TAU GLUTATHIONE S-TRANSFERASE 52	glutathione transferase U12	TAU GLUTATHIONE S-TRANSFERASE 52		12	LOC_Os12g02960.	 Biochemical character	Os12g0123200	LOC_Os12g02960.1		0		GO:0016740 - transferase activity		
9570	GSTZ3	OsGSTZ3	ZETA GLUTATHIONE S-TRANSFERASE 3		ZETA GLUTATHIONE S-TRANSFERASE 3		2	AY538745	 Biochemical character	Os02g0564000	LOC_Os02g35590.3, LOC_Os02g35590.2, LOC_Os02g35590.1		0				
9571	GSTZ4	OsGSTZ4	ZETA GLUTATHIONE S-TRANSFERASE 4		ZETA GLUTATHIONE S-TRANSFERASE 4		11		 Biochemical character	Os11g0245100	LOC_Os11g14040.1		0				
9572	DHAR1	OsDHAR1, DHAR, cytDHAR, OsDHAR	DEHYDROASCORBATE REDUCTASE 1	DHAR class GLUTATHIONE S-TRANSFERASE 1, dehydroascorbate reductase, dehydroascorbate reductase 1, cytosolic dehydroascorbate reductase	DEHYDROASCORBATE REDUCTASE 1		5	AY074786. AB037970. a rice glutathione-dependent DHAR. 	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os05g0116100	LOC_Os05g02530.1		0		GO:0005777 - peroxisome, GO:0005773 - vacuole, GO:0005739 - mitochondrion, GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0043903 - regulation of symbiosis, encompassing mutualism through parasitism, GO:0009570 - chloroplast stroma, GO:0032929 - negative regulation of superoxide release, GO:0010043 - response to zinc ion, GO:0009610 - response to symbiotic fungus, GO:0010731 - protein amino acid glutathionylation, GO:0043295 - glutathione binding, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0010193 - response to ozone, GO:0000302 - response to reactive oxygen species, GO:0009753 - response to jasmonic acid stimulus, GO:0006979 - response to oxidative stress, GO:0005886 - plasma membrane	TO:0000396 - grain yield, TO:0002657 - oxidative stress	
9573	DHAR2	OsDHAR2	DEHYDROASCORBATE REDUCTASE 2	DHAR classGLUTATHIONE S-TRANSFERASE 2	DEHYDROASCORBATE REDUCTASE 2		6		 Biochemical character	Os06g0232600	LOC_Os06g12630.3, LOC_Os06g12630.2, LOC_Os06g12630.1		0				
9574	TCHQD1	OsTCHQD1	TETRACHLOROHYDROQUINONE DEHYDROGENASE 1	Glutathione S-transferase	TETRACHLOROHYDROQUINONE DEHYDROGENASE 1		4		 Biochemical character	Os04g0435500	LOC_Os04g35560.2, LOC_Os04g35560.1		0				
9576	EF1G2	OsEF1G2	ELONGATION FACTOR 1 GAMMA 2		ELONGATION FACTOR 1 GAMMA 2		6	AY224444,  Q5Z627. 	 Biochemical character	Os06g0571400	LOC_Os06g37440.1		0		GO:0005853 - eukaryotic translation elongation factor 1 complex, GO:0006414 - translational elongation, GO:0003746 - translation elongation factor activity		
9577	GSTT2		THETA GLUTATHIONE S-TRANSFERASE 2  		THETA GLUTATHIONE S-TRANSFERASE 2		11	AY541762	 Biochemical character				0				
9579	CYT-INV1	OsCYT-INV1	ALKALINE/NEUTRAL INVERTASE 1		ALKALINE/NEUTRAL INVERTASE 			Root cell length reduced.	 Vegetative organ - Root				0				
9580	BPH27	Bph27	BROWN PANTHOPPER RESISTANCE 27		_		4	a brown planthopper resistance gene from wild rice (Oryza rufipogon Griff.).	 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
9582	HDT1	OsHDT1, HDT701	HISTONE DEACETYLASE 1	histone deacetylase OsHDT1, histone deacetylase701, histone deacetylase 701	HISTONE DEACETYLASE 1	hdt701, hdt701-1	5	Over-expression of OsHDT1 repressed the nonadditive expression of the key flowering repressors in the hybrid (i.e. OsGI and Hd1) inducing early flowering. AU082425, AU068818, D22916, C72062, D15380, AU067990, D39074.	 Biochemical character,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance	Os05g0597100	LOC_Os05g51830.1				GO:0008270 - zinc ion binding, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0004407 - histone deacetylase activity, GO:0005622 - intracellular	TO:0000137 - days to heading, TO:0002616 - flowering time	
9583	HDT2	OsHDT2	HISTONE DEACETYLASE 2	histone deacetylase OsHDT2	HISTONE DEACETYLASE 2		1		 Biochemical character	Os01g0909100	LOC_Os01g68104.1				GO:0004407 - histone deacetylase activity		
9584	_	OsLFNR1, LFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR	_	leaf-type ferredoxin-NADP+-oxidoreductase 1, leaf-type FNR 1, Fd NADP+ oxidoreductase 1, ferredoxin-NADP reductase			2	Os-LFNR2 in Ynag et al. 2016. LOC_Os02g01340.	 Biochemical character,  Vegetative organ - Leaf	Os02g0103800	LOC_Os02g01340.2, LOC_Os02g01340.1				GO:0004324 - ferredoxin-NADP+ reductase activity, GO:0042651 - thylakoid membrane, GO:0050660 - FAD binding, GO:0050661 - NADP or NADPH binding, GO:0009543 - chloroplast thylakoid lumen, GO:0009767 - photosynthetic electron transport chain		
9585	_	OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1	_	"leaf-type ferredoxin-NADP+-oxidoreductase 2, leaf-type FNR 2, Fd NADP+ oxidoreductase 2, Leaf
Ferredoxin-NADP+ Reductase, leaf FNR"			6	P41344. D17790. Light reaction group L5.  LOC_Os06g01850. Os-LFNR1 in Ynag et al. 2016.	 Biochemical character,  Vegetative organ - Leaf	Os06g0107700	LOC_Os06g01850.1				GO:0042742 - defense response to bacterium, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0045157 - electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity, GO:0008266 - poly(U) RNA binding, GO:0003959 - NADPH dehydrogenase activity, GO:0050661 - NADP or NADPH binding, GO:0006810 - transport, GO:0050660 - FAD binding, GO:0009570 - chloroplast stroma, GO:0009767 - photosynthetic electron transport chain, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009941 - chloroplast envelope, GO:0031977 - thylakoid lumen, GO:0009535 - chloroplast thylakoid membrane, GO:0048046 - apoplast, GO:0004324 - ferredoxin-NADP+ reductase activity		
9586	PSAD	PsaD, OsPsaD	PHOTOSYSTEM I SUBUNIT 	PSI subunit PsaD, photosystem I subunit PsaD, PSI subunit D	PHOTOSYSTEM I SUBUNIT 		8	LOC_Os08g44680.		Os08g0560900	LOC_Os08g44680.1				GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis, GO:0010287 - plastoglobule, GO:0009538 - photosystem I reaction center		
9587	PSAE	PsaE, OsPsaE	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaE, photosystem I subunit PsaE			7	LOC_Os07g25430.		Os07g0435300	LOC_Os07g25430.1				GO:0009538 - photosystem I reaction center, GO:0015979 - photosynthesis		
9588	PSAF	Usaf, OsPS1-F, PS1-F	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaF, photosystem I subunit PsaF, PHOTOSYSTEM 1-F subunit		osps1-f	3		 Vegetative organ - Leaf,  Vegetative organ - Culm,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os03g0778100	LOC_Os03g56670.2, LOC_Os03g56670.1				GO:0009538 - photosystem I reaction center, GO:0015979 - photosynthesis	TO:0000495 - chlorophyll content, TO:0000316 - photosynthetic ability, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000396 - grain yield, TO:0000346 - tiller number	PO:0025034 - leaf 
9589	PSAG	PsaG	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaG, photosystem I subunit PsaG			9			Os09g0481200	LOC_Os09g30340.1				GO:0016168 - chlorophyll binding		
9590	PSAH	PsaH, GOS5	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaH, photosystem I subunit PsaH			5	Q0DG05. X51911. A2Y7D9. a light-inducible shoot-specific rice gene. LOC_Os05g48630.		Os05g0560000	LOC_Os05g48630.2, LOC_Os05g48630.1				GO:0009538 - photosystem I reaction center, GO:0015979 - photosynthesis, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane		
9591	PSAK	PsaK	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaK, photosystem I subunit PsaK, PSI subunit X			7	LOC_Os07g05480. XB21 interacting protein (XB21IP).		Os07g0148900	LOC_Os07g05480.2, LOC_Os07g05480.1				GO:0015979 - photosynthesis, GO:0009535 - chloroplast thylakoid membrane, GO:0016168 - chlorophyll binding, GO:0009522 - photosystem I		
9592	PSAL	PsaL	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaL, photosystem I subunit PsaL			12			Os12g0420400	LOC_Os12g23200.2, LOC_Os12g23200.1				GO:0015979 - photosynthesis, GO:0009538 - photosystem I reaction center		
9593	PSAN	PsaN	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaN, photosystem I subunit PsaN			5			Os05g0242400	LOC_Os05g15280.1				GO:0015979 - photosynthesis, GO:0009522 - photosystem I		
9594	PSBO	PsbO, psbO	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbO, photosystem II subunit PsbO, 33kDa oxygen evolving protein			1	D21109.		Os01g0501800	LOC_Os01g31690.2, LOC_Os01g31690.1				GO:0042549 - photosystem II stabilization, GO:0019898 - extrinsic to membrane, GO:0009654 - oxygen evolving complex, GO:0005509 - calcium ion binding		
9595	PSBP	PsbP, OsPsbP, psbP	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbP, photosystem II subunit PsbP		psbp	7	a 23-kDa oxygen-evolving complex protein. KF460579. GO:0090391: granum assembly.	 Tolerance and resistance - Disease resistance	Os07g0141400	LOC_Os07g04840.1				GO:0010027 - thylakoid membrane organization, GO:0051607 - defense response to virus, GO:0019898 - extrinsic to membrane, GO:0005509 - calcium ion binding, GO:0015979 - photosynthesis, GO:0009658 - chloroplast organization, GO:0009654 - oxygen evolving complex	TO:0002715 - chloroplast development trait, TO:0000148 - viral disease resistance	
9596	PSBR	PsbR, OsPsbR1, PsbR1	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbR, photosystem II subunit PsbR, PSII subunit PsbR1, photosystem II subunit PsbR1			7	a 10 kDa Photosystem II polypeptide. eukaryotic photosystem II oxygen-evolving complex subunit. LOC_Os07g05360.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0147500	LOC_Os07g05360.2, LOC_Os07g05360.1				GO:0009409 - response to cold, GO:0015979 - photosynthesis, GO:0009654 - oxygen evolving complex, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
9598	PSBX	PsbX	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbX, photosystem II subunit PsbX			3			Os03g0343900	LOC_Os03g22370.1				GO:0015979 - photosynthesis, GO:0009523 - photosystem II		
9599	PSBY	PsbY	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbY, photosystem II subunit PsbY, PSII core complex PsbY			8	LOC_Os08g02630.		Os08g0119800	LOC_Os08g02630.1				GO:0009533 - chloroplast stromal thylakoid, GO:0030145 - manganese ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0002237 - response to molecule of bacterial origin, GO:0015979 - photosynthesis, GO:0009523 - photosystem II, GO:0016021 - integral to membrane		
9600	PSBW	PsbW	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbW, photosystem II subunit PsbW			1	Q5ZBY9.		Os01g0773700	LOC_Os01g56680.2, LOC_Os01g56680.1				GO:0015979 - photosynthesis, GO:0009523 - photosystem II, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane		
9601	PSB28	Psb28	PHOTOSYSTEM II SUBUNIT	PSII subunit Psb28, photosystem II subunit Psb28			1	Q0JG75.		Os01g0938100	LOC_Os01g71190.1				GO:0009535 - chloroplast thylakoid membrane, GO:0009654 - oxygen evolving complex, GO:0015979 - photosynthesis		
9602	_	CP24, Lhcb6	_	light-harvesting protein CP24, PSII CP24			4	LOC_Os04g38410.	 Tolerance and resistance - Stress tolerance	Os04g0457000	LOC_Os04g38410.1				GO:0009765 - photosynthesis, light harvesting, GO:0010114 - response to red light, GO:0010287 - plastoglobule, GO:0010196 - nonphotochemical quenching, GO:0009637 - response to blue light, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane	TO:0000158 - red light sensitivity, TO:0000159 - blue light sensitivity	
9603	_	CP29, OsCP29, LHCB4, Lhcb4	_	light-harvesting protein CP29, PSII inner antenna subunit CP29, PSII antenna CP29, Photosystem II Inner Antenna CP29			7	LOC_Os07g37240. light-harvesting Chl a/b-binding protein of photosystem II.	 Tolerance and resistance - Stress tolerance	Os07g0558400	LOC_Os07g37240.1				GO:0009765 - photosynthesis, light harvesting, GO:0009768 - photosynthesis, light harvesting in photosystem I, GO:0031409 - pigment binding, GO:0018298 - protein-chromophore linkage, GO:0016168 - chlorophyll binding, GO:0016021 - integral to membrane, GO:0009941 - chloroplast envelope, GO:0010287 - plastoglobule, GO:0010218 - response to far red light, GO:0009637 - response to blue light, GO:0009535 - chloroplast thylakoid membrane, GO:0009523 - photosystem II, GO:0009644 - response to high light intensity, GO:0009522 - photosystem I, GO:0009416 - response to light stimulus, GO:0010114 - response to red light	TO:0000075 - light sensitivity	
9604	_	ASCAB9-A, CP26, Lhcb5	_	light-harvesting protein ASCAB9-A, PSII CP26, PSII Lhcb5			11	D85512.		Os11g0242800	LOC_Os11g13890.6, LOC_Os11g13890.5, LOC_Os11g13890.4, LOC_Os11g13890.2, LOC_Os11g13890.1				GO:0010114 - response to red light, GO:0046872 - metal ion binding, GO:0009517 - PSII associated light-harvesting complex II, GO:0010218 - response to far red light, GO:0010196 - nonphotochemical quenching, GO:0009533 - chloroplast stromal thylakoid, GO:0010287 - plastoglobule, GO:0009765 - photosynthesis, light harvesting, GO:0009637 - response to blue light, GO:0009783 - photosystem II antenna complex		
9605	_	lhcA	_	PSI type II chlorophyll a/b-binding protein			7			Os07g0577600	LOC_Os07g38960.2, LOC_Os07g38960.1				GO:0009765 - photosynthesis, light harvesting		
9606	_	OsLhca3, Lhca3	_	PSI type III chlorophyll a/b-binding protein			2	LOC_Os02g10390.		Os02g0197600	LOC_Os02g10390.3, LOC_Os02g10390.2, LOC_Os02g10390.1				GO:0009765 - photosynthesis, light harvesting, GO:0016020 - membrane, GO:0009507 - chloroplast		
9607	_	Lhcb1.1 OsLhcb1.1, lhcB	_	Type I chlorophyll a/b-binding protein, light-harvesting chlorophyll a/b-binding protein b1.1			1	homologous to AT1G29920 (CAB2).	 Biochemical character	Os01g0720500	LOC_Os01g52240.1				GO:0009523 - photosystem II, GO:0009765 - photosynthesis, light harvesting, GO:0016168 - chlorophyll binding, GO:0031409 - pigment binding, GO:0009768 - photosynthesis, light harvesting in photosystem I, GO:0018298 - protein-chromophore linkage, GO:0009416 - response to light stimulus, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0010287 - plastoglobule, GO:0016021 - integral to membrane, GO:0009522 - photosystem I		
9608	_		_	Type III chlorophyll a/b-binding protein, PSII Cab type III			7			Os07g0562700	LOC_Os07g37550.1				GO:0005198 - structural molecule activity, GO:0009535 - chloroplast thylakoid membrane, GO:0046872 - metal ion binding, GO:0009765 - photosynthesis, light harvesting		
9609	ELL	chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL	ETIOLATED LEAF AND LETHAL	Magnesium-chelatase subunit chlI, magnesium chelatase subunit ChlI, MgCh I subbing, Mg-chelatase I subunit, etiolated leaf and lethal		ell, oschli	3	Q53RM0.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os03g0563300	LOC_Os03g36540.2, LOC_Os03g36540.1				GO:0009658 - chloroplast organization, GO:0005618 - cell wall, GO:0016851 - magnesium chelatase activity, GO:0015995 - chlorophyll biosynthetic process, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0009507 - chloroplast, GO:0009570 - chloroplast stroma, GO:0015979 - photosynthesis	TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000326 - leaf color	
9610	_	chlH	_	Magnesium-chelatase subunit H			7		 Biochemical character,  Coloration - Chlorophyll	Os07g0656500	LOC_Os07g46310.1				GO:0015995 - chlorophyll biosynthetic process, GO:0016851 - magnesium chelatase activity, GO:0000166 - nucleotide binding		
9611	_	OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA	_	"Rubisco activase, the small isoform of rice Rubisco activase, Rubisco activase small isoform, \"ribulose-1, 5-bisphosphate carboxylase/oxygenase activase\", Rubisco activase II, Rubisco activase large isoform, Rubisco activase I, Rubisco-A, RuBisCO activase A1"			11	U74321. P93431. BAA97584.BF889465. ABG22614. BF889453. a bacterial blight-resistance gene ME137 (He et al. 2013). LOC_Os11g47970. XB21 interacting protein (XB21IP).	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0707000	LOC_Os11g47970.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005524 - ATP binding, GO:0009570 - chloroplast stroma, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000229 - photoperiod sensitivity, TO:0000207 - plant height	
9612	_	OsNR1, NR1, nia1, OsNIA1, NIA1	_	nitrate reductase apoenzyme 1, nitrate reductase 1, Nitrate reductase [NADH]1			8	P16081. X15819, X15820.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0468100	LOC_Os08g36480.1				GO:0042128 - nitrate assimilation, GO:0043546 - molybdopterin cofactor binding, GO:0050660 - FAD binding, GO:0005506 - iron ion binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0006809 - nitric oxide biosynthetic process, GO:0009055 - electron carrier activity, GO:0009703 - nitrate reductase (NADH) activity, GO:0020037 - heme binding, GO:0030151 - molybdenum ion binding, GO:0009416 - response to light stimulus, GO:0009610 - response to symbiotic fungus, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
9613	_	OsNIA2, NIA2, OsNR2, NR2	_	nitrate reductase apoenzyme 2, nitrate reductase 2			8		 Biochemical character	Os08g0468700	LOC_Os08g36500.1				GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0030151 - molybdenum ion binding, GO:0042128 - nitrate assimilation, GO:0006809 - nitric oxide biosynthetic process, GO:0043546 - molybdopterin cofactor binding, GO:0050464 - nitrate reductase (NADPH) activity, GO:0050660 - FAD binding		
9614	_	Fd1, OsFd1, ADI1	_	Ferredoxin I, ferredoxin, ferredoxin 1, anti-disease protein 1			8	D30763. AY072818. Q0J8M2. LOC_Os08g01380. GO:1901170: naphthalene catabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0104600	LOC_Os08g01380.2, LOC_Os08g01380.1				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009055 - electron carrier activity, GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0009628 - response to abiotic stimulus, GO:0006810 - transport	TO:0000021 - copper sensitivity, TO:0000482 - chemical stress sensitivity	
9615	_		_	Lectin protein kinase domain-containing protein			8		 Biochemical character	Os08g0124000	LOC_Os08g02996.2, LOC_Os08g02996.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0004872 - receptor activity		
9616	_		_	Chloroplast 50S ribosomal protein			3	Q9ZST0.		Os03g0125000	LOC_Os03g03360.1				GO:0006412 - translation, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome		
9617	_		_	Chloroplast 50S ribosomal protein L1			5			Os05g0388500	LOC_Os05g32220.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0015934 - large ribosomal subunit, GO:0003723 - RNA binding		
9619	_		_	GDA1/CD39 family protein			11		 Biochemical character	Os11g0125900	LOC_Os11g03230.3, LOC_Os11g03230.2, LOC_Os11g03230.1				GO:0016787 - hydrolase activity		
9620	RFT1	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1	RICE FLOWERING-LOCUS T 1	Rice Flowering-locus T 1, RICE FLOWERING LOCUS T 1, FT-like gene 3, RFT		rft1-1, rft1-2, rft1	6	RFT1 encodes a major LD florigen. Q8VWH2. AB062675, AB062676. AB426870-AB426878 (O. sativa and other wild rice species).	 Reproductive organ - Heading date	Os06g0157500	LOC_Os06g06300.1		0		GO:0005634 - nucleus, GO:0009909 - regulation of flower development, GO:0010229 - inflorescence development, GO:0030154 - cell differentiation, GO:0005737 - cytoplasm, GO:0009908 - flower development, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0048573 - photoperiodism, flowering, GO:0048586 - regulation of long-day photoperiodism, flowering	TO:0000137 - days to heading	
9621	PSBS1	OsPsbS1, PsbS1, psbS	_	rice PsbS homologue 1			1	LOC_Os01g64960.		Os01g0869800	LOC_Os01g64960.2, LOC_Os01g64960.1				GO:0055085 - transmembrane transport, GO:0009535 - chloroplast thylakoid membrane		
9623	PSBS2	PsbS, OsPsbS2	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbS, photosystem II subunit PsbS, rice  PsbS homologue 2, chlorophyll-binding 22 kDa protein of Photosystem II			4	D84392.		Os04g0690800	LOC_Os04g59440.1						
9624	PHF1	OsPHF1, OsWD40-137, OsSEC12	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1, SEC12 ortholog, Phosphate transporter facilitator 1		phf1-1, phf1-2, phf1-3, Osphf1-7, phf1	7	LOC_Os07g09000. TO:0020102: phosphate content. TO:0006054: arsenic concentration.	 Tolerance and resistance - Stress tolerance	Os07g0187700	LOC_Os07g09000.1				GO:0006817 - phosphate transport, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0046685 - response to arsenic, GO:0016036 - cellular response to phosphate starvation, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane	TO:0000102 - phosphorus sensitivity	
9625	PHF1L	OsPHF1L, OsWD40-94	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1-LIKE	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1-LIKE			3			Os03g0799900	LOC_Os03g58570.1						
9626	IPS1	OsIPS1, IPS1	INDUCED BY PHOSPHATE STARVATION 1	induced by phosphate starvation 1, Phosphate starvation 1			3	AY568759. TPSI1/Mt4 family gene. A phosphorus starvation induced gene OsIPS1. TO:0020102: phosphate content. Pi signaling pathway. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance	Os03g0146800	LOC_Os03g05334.1				GO:0010167 - response to nitrate, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	
9627	_	OsSQD2, SQD2, SQD2.2, OsSQD2.2	_	sulfoquinovosyldiacylglycerol 2, sulfoquinovosyl transferase-like protein 2.2, Sulfoquinovosyldiacylglycerol synthase 2.2			1	TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0142300	LOC_Os01g04920.3, LOC_Os01g04920.2, LOC_Os01g04920.1				GO:0016036 - cellular response to phosphate starvation, GO:0046510 - UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity, GO:0009247 - glycolipid biosynthetic process, GO:0046506 - sulfolipid biosynthetic process, GO:0009941 - chloroplast envelope, GO:0009812 - flavonoid metabolic process, GO:0005737 - cytoplasm, GO:0009813 - flavonoid biosynthetic process	TO:0002661 - seed maturation, TO:0000102 - phosphorus sensitivity, TO:0000180 - spikelet fertility, TO:0000346 - tiller number, TO:0000290 - flavonoid content	PO:0025034 - leaf 
9629	PHR2	OsPHR2, Os-PHR2	PHOSPHATE STARVATION RESPONSE 2	Phosphate Starvation Response2, PHOSPHATE RESPONSE2, PHOSPHATE STARVATION RESPONSE REGULATOR 2		phr2, Osphr2	7	LOC_Os07g25710. TO:0020102: phosphate content. TO:0006054: arsenic concentration. a functional ortholog of AtPHR1.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os07g0438800	LOC_Os07g25710.1, LOC_Os07g25710.2, LOC_Os07g25710.3, LOC_Os07g25710.4				GO:0042594 - response to starvation, GO:0048767 - root hair elongation, GO:0055081 - anion homeostasis, GO:0006817 - phosphate transport, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0016036 - cellular response to phosphate starvation	TO:0000168 - abiotic stress trait, TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
9630	PHR1	OsPHR1	PHOSPHATE STARVATION RESPONSE 1	PHOSPHATE RESPONSE1		phr1, Osphr1	3	LOC_Os03g21240.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0329900	LOC_Os03g21240.1				GO:0048767 - root hair elongation, GO:0042594 - response to starvation, GO:0055081 - anion homeostasis, GO:0003677 - DNA binding	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
9632	ATG1A	OsATG1a	AUTOPHAGY ASSOCIATED GENE 1A	autophagy 1a			3		 Biochemical character	Os03g0268200	LOC_Os03g16130.6, LOC_Os03g16130.5, LOC_Os03g16130.4, LOC_Os03g16130.3, LOC_Os03g16130.2, LOC_Os03g16130.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
9635	ATG3A	OsATG3a, Atg3a	AUTOPHAGY ASSOCIATED GENE 3A	autophagy 3a, AUTOPHAGY RELATED3a			1	LOC_Os01g10290.	 Biochemical character	Os01g0200000	LOC_Os01g10290.2, LOC_Os01g10290.1				GO:0005737 - cytoplasm, GO:0006914 - autophagy, GO:0015031 - protein transport		
9636	ATG3B	OsATG3b, Atg3b	AUTOPHAGY ASSOCIATED GENE 3B	autophagy 3b, AUTOPHAGY RELATED3b			10	LOC_Os10g41110.	 Biochemical character	Os10g0560450	LOC_Os10g41110.1						
9637	ATG4A	OsATG4a, Atg4a	AUTOPHAGY ASSOCIATED GENE 4A	autophagy 4a, AUTOPHAGY RELATED4a			3	Q75KP8. LOC_Os03g27350.	 Biochemical character	Os03g0391000	LOC_Os03g27350.3, LOC_Os03g27350.2, LOC_Os03g27350.1				GO:0015031 - protein transport, GO:0005737 - cytoplasm, GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity, GO:0006914 - autophagy		
9639	ATG5	OsATG5, Atg5	AUTOPHAGY ASSOCIATED GENE 5	autophagy 5, AUTOPHAGY RELATED5			2	Q6ZGL4. LOC_Os02g02570.	 Biochemical character	Os02g0117800	LOC_Os02g02570.1				GO:0006914 - autophagy, GO:0005737 - cytoplasm, GO:0015031 - protein transport		
9640	ATG6A	OsATG6a	AUTOPHAGY ASSOCIATED GENE 6A	autophagy 6a			1		 Tolerance and resistance - Stress tolerance	Os01g0681400	LOC_Os01g48920.1				GO:0006914 - autophagy		
9641	ATG6B	OsATG6b, OsATG6c	AUTOPHAGY ASSOCIATED GENE 6B	autophagy 6b			3	OsATG6c in Rana et al. 2012.	 Tolerance and resistance - Stress tolerance	Os03g0644000	LOC_Os03g44200.2, LOC_Os03g44200.1				GO:0006914 - autophagy		
9642	ATG6C	OsATG6c, OsATG6b	AUTOPHAGY ASSOCIATED GENE 6C	autophagy 6c			3	OsATG6b in Rana et al. 2012.	 Tolerance and resistance - Stress tolerance	Os03g0258500	LOC_Os03g15290.1				GO:0006914 - autophagy		
9643	ATG7	OsATG7, Atg7	AUTOPHAGY ASSOCIATED GENE 7	autophagy 7, OsAuTophaGy7, autophagy-related 7, AUTOPHAGY RELATED7		Osatg7, Osatg7-1, Osatg7-2	1	LOC_Os01g42850. TO:0020093: nitrogen content.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0614900	LOC_Os01g42850.2, LOC_Os01g42850.1				GO:0048653 - anther development, GO:0010152 - pollen maturation, GO:0000166 - nucleotide binding, GO:0009901 - anther dehiscence, GO:0005737 - cytoplasm, GO:0003824 - catalytic activity, GO:0009846 - pollen germination, GO:0006914 - autophagy, GO:0046470 - phosphatidylcholine metabolic process, GO:0006629 - lipid metabolic process, GO:0010150 - leaf senescence	TO:0002637 - leaf size, TO:0000106 - male sterility type, TO:0002675 - gibberellic acid content, TO:0002660 - cytokinin content, TO:0000249 - leaf senescence	PO:0001004 - anther development stage , PO:0001035 - G anther dehiscence stage , PO:0001054 - 4 leaf senescence stage 
9645	ATG8B	OsATG8b, Atg8b	AUTOPHAGY ASSOCIATED GENE 8B	autophagy 8b, OsAuTophaGy8b, AUTOPHAGY RELATED8b			4	Q7XPR1. LOC_Os04g53240.	 Biochemical character	Os04g0624000	LOC_Os04g53240.4, LOC_Os04g53240.3, LOC_Os04g53240.2, LOC_Os04g53240.1				GO:0005874 - microtubule, GO:0033110 - CVT vesicle membrane, GO:0015031 - protein transport, GO:0000421 - autophagic vacuole membrane, GO:0006914 - autophagy		
9646	ATG8C	OsATG8c	AUTOPHAGY ASSOCIATED GENE 8C	autophagy 8c, OsAuTophaGy8c			8	Q6Z1D5. D49033, AU101829. LOC_Os08g09240.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0191600	LOC_Os08g09240.3, LOC_Os08g09240.2, LOC_Os08g09240.1	GR:0101171			GO:0000421 - autophagic vacuole membrane, GO:0006914 - autophagy, GO:0005874 - microtubule, GO:0033110 - CVT vesicle membrane, GO:0015031 - protein transport	TO:0000432 - temperature response trait	
9647	ATG8D	OsATG8d, Atg8e	AUTOPHAGY ASSOCIATED GENE 8D	autophagy 8d, AUTOPHAGY RELATED8e			2	Q6H6P0. LOC_Os02g32700. Atg8e in Chung et al. 2009. 	 Biochemical character	Os02g0529150	LOC_Os02g32700.1				GO:0033110 - CVT vesicle membrane, GO:0006914 - autophagy, GO:0005874 - microtubule, GO:0015031 - protein transport, GO:0000421 - autophagic vacuole membrane		
9648	ATG8	Atg8, OsAtg8, APG8, OsATG8a, Atg8a	AUTOPHAGY ASSOCIATED GENE 8	autophagy 8, autophagy 8a, AUTOPHAGY ASSOCIATED GENE 8A, OsAuTophaGy8a, AUTOPHAGY RELATED8a			7	Q69RC4, Q2XPP5, DQ269983, ABB77258, PO:0020104; leaf sheath ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. LOC_Os07g32800.  Atg8a in Chung et al. 2009.	 Biochemical character	Os07g0512200	LOC_Os07g32800.2, LOC_Os07g32800.1	GR:0101171	0		GO:0005737 - cytoplasm, GO:0006914 - autophagy, GO:0000421 - autophagic vacuole membrane, GO:0005739 - mitochondrion, GO:0005775 - vacuolar lumen, GO:0019776 - Atg8 ligase activity, GO:0005776 - autophagic vacuole, GO:0005874 - microtubule, GO:0015031 - protein transport, GO:0019786 - APG8-specific protease activity, GO:0019779 - APG8 activating enzyme activity, GO:0005515 - protein binding, GO:0033110 - CVT vesicle membrane		PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
9649	ATG8E	OsATG8e, OsATG8d, Atg8d	AUTOPHAGY ASSOCIATED GENE 8E	autophagy 8e, OsAuTophaGy8d, AUTOPHAGY RELATED8d			11	Q2RBS4. LOC_Os11g01010. OsATG8d in Izumi et al. 2015.  Atg8d in Chung et al. 2009. CI298209, CF992091, CI034410, EE591899.	 Biochemical character	Os11g0100100	LOC_Os11g01010.1				GO:0015031 - protein transport, GO:0006914 - autophagy, GO:0033110 - CVT vesicle membrane, GO:0005874 - microtubule, GO:0000421 - autophagic vacuole membrane		
9650	ATG8F	OsATG8f	AUTOPHAGY ASSOCIATED GENE 8F	autophagy 8f			12	Os12g0100050 (in Rap2 (build4), Rap3 (build5)).									
9651	ATG8I	OsATG8i	AUTOPHAGY ASSOCIATED GENE 8I	autophagy 8i				AK065550.									
9652	ATG9A	OsATG9a	AUTOPHAGY ASSOCIATED GENE 9A	autophagy 9a			3			Os03g0248000	LOC_Os03g14380.1						
9653	ATG9B	OsATG9b	AUTOPHAGY ASSOCIATED GENE 9B	autophagy 9b			10			Os10g0163100	LOC_Os10g07994.1						
9654	ATG10A	OsATG10a, Atg10a	AUTOPHAGY ASSOCIATED GENE 10A	autophagy 10a, AUTOPHAGY RELATED10a			4	LOC_Os04g41990.		Os04g0497350	LOC_Os04g41990.1						
9655	ATG10B	OsATG10b, Atg10b	AUTOPHAGY ASSOCIATED GENE 10B	autophagy 10b, AUTOPHAGY RELATED10b			12	LOC_Os12g32210.		Os12g0506800	LOC_Os12g32210.2, LOC_Os12g32210.1						
9656	ATG12	OsATG12, Atg12	AUTOPHAGY ASSOCIATED GENE 12	autophagy 12, AUTOPHAGY RELATED12			6	Q69NP0. LOC_Os06g10340.		Os06g0205000	LOC_Os06g10340.1				GO:0005737 - cytoplasm, GO:0000045 - autophagic vacuole formation, GO:0015031 - protein transport		
9657	ATG13A	OsATG13a	AUTOPHAGY ASSOCIATED GENE 13A	autophagy 13a			2			Os02g0644500	LOC_Os02g43040.1						
9658	ATG13B	OsATG13b	AUTOPHAGY ASSOCIATED GENE 13B	autophagy 13b			4			Os04g0538700	LOC_Os04g45570.2, LOC_Os04g45570.1						
9659	ATG16	OsATG16	AUTOPHAGY ASSOCIATED GENE 16	autophagy 16			9			Os09g0497700	LOC_Os09g32250.2, LOC_Os09g32250.1						
9660	ATG18A	OsATG18a, OsWD40-56	AUTOPHAGY ASSOCIATED GENE 18A	autophagy 18a			2	AY445625. LOC_Os02g54910.		Os02g0791800	LOC_Os02g54910.1				GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding, GO:0070772 - PAS complex, GO:0034045 - pre-autophagosomal structure membrane, GO:0016236 - macroautophagy, GO:0000045 - autophagic vacuole formation, GO:0005829 - cytosol, GO:0000421 - autophagic vacuole membrane		
9661	ATG18B	OsATG18b, OsWD40-3	AUTOPHAGY ASSOCIATED GENE 18B	autophagy 18b			1			Os01g0168500	LOC_Os01g07400.2, LOC_Os01g07400.1				GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding, GO:0006914 - autophagy, GO:0031090 - organelle membrane, GO:0042594 - response to starvation		
9662	ATG18C	OsATG18c, OsWD40-30	AUTOPHAGY ASSOCIATED GENE 18C	autophagy 18c			1	CT832140. 		Os01g0934000	LOC_Os01g70780.1				GO:0006914 - autophagy, GO:0031090 - organelle membrane, GO:0042594 - response to starvation, GO:0032266 - phosphatidylinositol 3-phosphate binding, GO:0005737 - cytoplasm, GO:0000045 - autophagic vacuole formation, GO:0010150 - leaf senescence, GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding		
9663	ATG18D	OsATG18d, OsWD40-114	AUTOPHAGY ASSOCIATED GENE 18D	autophagy 18d			5			Os05g0169200	LOC_Os05g07710.3, LOC_Os05g07710.2, LOC_Os05g07710.1				GO:0006914 - autophagy, GO:0032266 - phosphatidylinositol 3-phosphate binding, GO:0042594 - response to starvation, GO:0005737 - cytoplasm, GO:0000045 - autophagic vacuole formation, GO:0031090 - organelle membrane, GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding		
9664	ATG18E	OsATG18e, OsWD40-27	AUTOPHAGY ASSOCIATED GENE 18E	autophagy 18e			1			Os01g0786900	LOC_Os01g57720.3, LOC_Os01g57720.2, LOC_Os01g57720.1						
9665	ATG18F	OsATG18f, OsWD40-118	AUTOPHAGY ASSOCIATED GENE 18F	autophagy 18f			5			Os05g0405900	LOC_Os05g33610.3, LOC_Os05g33610.2, LOC_Os05g33610.1				GO:0042594 - response to starvation		
9669	V2	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK	VIRESCENT 2	virescent2, virescent 2, virescent-2, Gluanylate kinase, plastid/mitochondrial guanylate kinase	GUANYLATE KINASE		3	GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. AB267728.This gene is essential for chloroplast differentiation (Sugimoto et al. 2007).	 Coloration - Chlorophyll	Os03g0320900	LOC_Os03g20460.2, LOC_Os03g20460.1	GR:0060981		77.0	GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000432 - temperature response trait	PO:0009025 - vascular leaf 
9670	V1	v1, NUS1	VIRESCENT 1	virescent1, virescent 1, virescent-1, nuclear undecaprenyl pyrophosphate synthase 1	NUS1 PROTEIN		3	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.AB550822. Plastid RNA-binding protein. NUS1 is expressed during a strictly limited period at the early P4 stage in a temperature-dependent manner	 Coloration - Chlorophyll	Os03g0656900	LOC_Os03g45400.1	GR:0060980		127.0	GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000432 - temperature response trait, TO:0000299 - leaf lamina color, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
9671	GK1	cGK, OsGK1	GUANYLATE KINASE 1		GUANYLATE KINASE 1		12	AB267729. GK1 localized in the cytoplasm. Rice plants with educed expression of GK1 are not phenotypically different to normal plants.	 Biochemical character	Os12g0515600	LOC_Os12g33100.1						
9672	PRMT1	OsPRMT1	PROTEIN ARGININE METHYLTRANSFERASE 1	protein arginine methyltransferase 1	PROTEIN ARGININE METHYLTRANSFERASE 1		9	Q0J2C6.	 Biochemical character	Os09g0359800	LOC_Os09g19560.1				GO:0005634 - nucleus, GO:0008168 - methyltransferase activity		
9673	PRMT3	OsPRMT3	PROTEIN ARGININE METHYLTRANSFERASE 3	protein arginine methyltransferase 3	PROTEIN ARGININE METHYLTRANSFERASE 3		7	A3BMN9.	 Biochemical character	Os07g0640000	LOC_Os07g44640.1				GO:0008168 - methyltransferase activity, GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding		
9674	PRMT4	OsPRMT4	PROTEIN ARGININE METHYLTRANSFERASE 4	protein arginine methyltransferase 4	PROTEIN ARGININE METHYLTRANSFERASE 4		7	Q7XI75.	 Biochemical character	Os07g0671700	LOC_Os07g47500.4, LOC_Os07g47500.3, LOC_Os07g47500.2, LOC_Os07g47500.1				GO:0006351 - transcription, DNA-dependent, GO:0008469 - histone-arginine N-methyltransferase activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005737 - cytoplasm		
9675	PRMT5	OsPRMT5	PROTEIN ARGININE METHYLTRANSFERASE 5	protein arginine methyltransferase 5	PROTEIN ARGININE METHYLTRANSFERASE 5		2	Q6YXZ7.	 Biochemical character	Os02g0139200	LOC_Os02g04660.2, LOC_Os02g04660.1				GO:0008469 - histone-arginine N-methyltransferase activity, GO:0005737 - cytoplasm		
9676	PRMT6A	OsPRMT6a	PROTEIN ARGININE METHYLTRANSFERASE 6A	protein arginine methyltransferase 6a	PROTEIN ARGININE METHYLTRANSFERASE 6A		10	Q75G68.	 Biochemical character	Os10g0489100	LOC_Os10g34740.1				GO:0008168 - methyltransferase activity		
9677	PRMT6B	OsPRMT6b	PROTEIN ARGININE METHYLTRANSFERASE 6B	protein arginine methyltransferase 6b	PROTEIN ARGININE METHYLTRANSFERASE 6B		4	Q7XKC0.	 Biochemical character	Os04g0677066	LOC_Os04g58060.2, LOC_Os04g58060.1				GO:0008168 - methyltransferase activity		
9678	PRMT7	OsPRMT7	PROTEIN ARGININE METHYLTRANSFERASE 7	protein arginine methyltransferase 7	PROTEIN ARGININE METHYLTRANSFERASE 7		6	Q5VS72.	 Biochemical character	Os06g0105500	LOC_Os06g01640.1				GO:0005737 - cytoplasm, GO:0008168 - methyltransferase activity, GO:0006479 - protein amino acid methylation		
9679	PRMT10	OsPRMT710	PROTEIN ARGININE METHYLTRANSFERASE 10	protein arginine methyltransferase 10	PROTEIN ARGININE METHYLTRANSFERASE 10		6	Q9SNQ2.	 Biochemical character	Os06g0142800	LOC_Os06g05090.2, LOC_Os06g05090.1				GO:0005737 - cytoplasm		
9680	4CL1	Os4CL1, 4-CL, 4-CL. 1	4-COUMARATE:COENZYME A LIGASE 1	4-coumarate:coenzyme A ligase 1, 4-coumarate-CoA ligase	4-COUMARATE:COENZYME A LIGASE 1		8	X52623. P17814. EC 6.2.1.12	 Biochemical character	Os08g0245200	LOC_Os08g14760.1				GO:0016207 - 4-coumarate-CoA ligase activity, GO:0009698 - phenylpropanoid metabolic process, GO:0005524 - ATP binding		
9681	4CL2	Os4CL2	4-COUMARATE:COENZYME A LIGASE 2	4-coumarate:coenzyme A ligase 2	4-COUMARATE:COENZYME A LIGASE 2		2	Q42982. EC 6.2.1.12 Os4CL2 was probably involved in UV protective flavonol formation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0697400	LOC_Os02g46970.1				GO:0016207 - 4-coumarate-CoA ligase activity, GO:0005524 - ATP binding, GO:0009698 - phenylpropanoid metabolic process		
9682	4CL3	Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL	4-COUMARATE:COENZYME A LIGASE 3	4-coumarate:coenzyme A ligase 3, 4-hydroxycinnamate CoA ligase 2	4-COUMARATE:COENZYME A LIGASE 3		2	Q6ETN3. EC 6.2.1.12. Os4CL3 participates in defense against wounding. 4CL (4-coumarate-CoA Ligase 1) in Rebecca et al. 2010. 4CL2 in Koshiba et al. 2013. LOC_Os02g08100. GO:1901698: response to nitrogen compound.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os02g0177600	LOC_Os02g08100.1				GO:0009809 - lignin biosynthetic process, GO:0009411 - response to UV, GO:0009834 - secondary cell wall biogenesis, GO:0009698 - phenylpropanoid metabolic process, GO:0005524 - ATP binding, GO:0016207 - 4-coumarate-CoA ligase activity, GO:0009807 - lignan biosynthetic process	TO:0000160 - UV light sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
9683	4CL4	Os4CL4	4-COUMARATE:COENZYME A LIGASE 4	4-coumarate:coenzyme A ligase 4	4-COUMARATE:COENZYME A LIGASE 4		6	LOC_Os06g44620. Q67W82. EC 6.2.1.12 Os4CL4 participates in defense against wounding. 4CL in Zhang et al. 2009.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0656500	LOC_Os06g44620.2, LOC_Os06g44620.1				GO:0009751 - response to salicylic acid stimulus, GO:0016207 - 4-coumarate-CoA ligase activity, GO:0005524 - ATP binding, GO:0009698 - phenylpropanoid metabolic process, GO:0009635 - response to herbicide, GO:0009408 - response to heat	TO:0000058 - herbicide sensitivity, TO:0000432 - temperature response trait	
9684	4CL5	Os4CL5, 4CL3, Os4CL3	4-COUMARATE:COENZYME A LIGASE 5	4-coumarate:coenzyme A ligase 5, 4-hydroxycinnamate CoA ligase 3	4-COUMARATE:COENZYME A LIGASE 5		8	Q6ZAC1. EC 6.2.1.12 Os4CL5 participates in defense against wounding. 4CL3 in Koshiba et al. 2013. LOC_Os08g34790.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0448000	LOC_Os08g34790.1				GO:0009698 - phenylpropanoid metabolic process, GO:0009807 - lignan biosynthetic process, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0016207 - 4-coumarate-CoA ligase activity	TO:0000733 - lignin biosynthesis trait, TO:0000432 - temperature response trait, TO:0000731 - lignin content	
9685	_	EPR1, OsEPR1	_	MYB transcription factor, OsLHY-like_chr.6, EARLY PHYTOCHROME RESPONSIVE1, EARLY PHYTOCHROME RESPONSIVE 1			6	LOC_Os06g51260. a rice ortholog of Arabidopsis gene for circadian clock component.	 Tolerance and resistance - Stress tolerance	Os06g0728700	LOC_Os06g51260.2, LOC_Os06g51260.1				GO:0009629 - response to gravity, GO:0007623 - circadian rhythm, GO:0003677 - DNA binding	TO:0002693 - gravity response trait	
9686	_	OsDof, OsDof2, Dof2, OsDof-2	_	Dof-type zinc finger, Dof zinc factor 2, Dof transcription factor 2			1	LOC_Os01g15900.		Os01g0264000	LOC_Os01g15900.1				GO:0007623 - circadian rhythm, GO:0003677 - DNA binding		
9687	ERF12	OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70	ETHYLENE RESPONSE FACTOR 12	ethylene response factor 12, drought-responsive ethylene response factor 1, drought-responsive ERF 1, APETALA2/ethylene-responsive element binding protein 70	ETHYLENE RESPONSE FACTOR 12		8		 Tolerance and resistance - Stress tolerance	Os08g0454000	LOC_Os08g35240.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0010366 - negative regulation of ethylene biosynthetic process	TO:0000276 - drought tolerance	
9688	ERF86	DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1	ETHYLENE RESPONSE FACTOR 86	drought-responsive ethylene response factor 2, drought-responsive ERF 2, ethylene response factor 86, ethylene response factor 1, APETALA2/ethylene-responsive element binding protein 74	ETHYLENE RESPONSE FACTOR 86		7		 Tolerance and resistance - Stress tolerance	Os07g0410700	LOC_Os07g22770.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
9689	ERF104	DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152	ETHYLENE RESPONSE FACTOR 104	drought-responsive ethylene response factor 3, drought-responsive ERF 3, ethylene response factor 104, APETALA2/ethylene-responsive element binding protein 152	ETHYLENE RESPONSE FACTOR 104		8	LOC_Os08g36920.	 Tolerance and resistance - Stress tolerance	Os08g0474000	LOC_Os08g36920.1				GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000303 - cold tolerance	
9690	ERF28	OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G	ETHYLENE RESPONSE FACTOR 28	drought-responsive ethylene response factor 4, drought-responsive ERF 4, ethylene response factor 28, ethylene response factor 29, APETALA2/ethylene-responsive element binding protein 161, Dehydration-responsive element-binding protein 1J, Dehydration-responsive element-binding protein 1I	ETHYLENE RESPONSE FACTOR 28		8	Q0J3Y6, Q0J3Y7. OsERF#028(LOC_Os08g43200) and OsERF#029(LOC_Os08g43210) in PMID:16407444. OsDREB1J(LOC_Os08g43200) and OsDREB1I(LOC_Os08g43210) in PMID:23077584. CI261507, CI268958. OsDREB1G in Chen et al. 2008 and Todaka et al. 2012.	 Tolerance and resistance - Stress tolerance	Os08g0545500	LOC_Os08g43210.1, LOC_Os08g43200.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006950 - response to stress	TO:0000276 - drought tolerance	
9691	ERF103	DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130	ETHYLENE RESPONSE FACTOR 103	drought-responsive ethylene response factor 5, drought-responsive ERF 5, ethylene response factor 103, APETALA2/ethylene-responsive element binding protein 130	ETHYLENE RESPONSE FACTOR 103		2		 Tolerance and resistance - Stress tolerance	Os02g0764700	LOC_Os02g52670.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
9693	ERF106	DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111	ETHYLENE RESPONSE FACTOR 106	drought-responsive ethylene response factor 7, drought-responsive ERF 7, ethylene response factor 106, APETALA2/ethylene-responsive element binding protein 111	ETHYLENE RESPONSE FACTOR 106		8	LOC_Os08g42550. a rice RAV subfamily member.	 Tolerance and resistance - Stress tolerance	Os08g0537900	LOC_Os08g42550.6, LOC_Os08g42550.5, LOC_Os08g42550.4, LOC_Os08g42550.3, LOC_Os08g42550.2, LOC_Os08g42550.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
9694	ERF124	DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158	ETHYLENE RESPONSE FACTOR 124	drought-responsive ethylene response factor 8, drought-responsive ERF 8, ethylene response factor 124, APETALA2/ethylene-responsive element binding protein 158	ETHYLENE RESPONSE FACTOR 124		12		 Tolerance and resistance - Stress tolerance	Os12g0168100	LOC_Os12g07030.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
9695	ERF11	OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83	ETHYLENE RESPONSE FACTOR 11	ethylene response factor 11, drought-responsive ethylene response factor 9, drought-responsive ERF 9, APETALA2/ethylene-responsive element binding protein 83	ETHYLENE RESPONSE FACTOR 11		2		 Tolerance and resistance - Stress tolerance	Os02g0781300	LOC_Os02g54050.1						
9696	ERF84	OsERF#084, OsERF084, OsERF84, OsDERF10, DERF10, AP2/EREBP#097, AP2/EREBP97	ETHYLENE RESPONSE FACTOR 84	drought-responsive ethylene response factor 10, drought-responsive ERF 10, ethylene response factor 84, APETALA2/ethylene-responsive element binding protein 97	ETHYLENE RESPONSE FACTOR 84		5		 Tolerance and resistance - Stress tolerance	Os05g0564700	LOC_Os05g49010.1						
9697	ERF51	OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156	ETHYLENE RESPONSE FACTOR 51	drought-responsive ethylene response factor 11, drought-responsive ERF 11, ethylene response factor 51, APETALA2/ethylene-responsive element binding protein 156	ETHYLENE RESPONSE FACTOR 51		10		 Tolerance and resistance - Stress tolerance	Os10g0371100	LOC_Os10g22600.1						
9698	ERF96	DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2	ETHYLENE RESPONSE FACTOR 96	drought-responsive ethylene response factor 12, drought-responsive ERF 12, ethylene response factor 96, APETALA2/ethylene-responsive element binding protein 116, OsAPETALA2	ETHYLENE RESPONSE FACTOR 96		10	LOC_Os10g41330. OsAP2.1 (the long form of the transcript), OsAP2.2 (the short form of the transcript), 	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os10g0562900	LOC_Os10g41330.2, LOC_Os10g41330.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		PO:0020039 - leaf lamina 
9699	ERF77	OsAP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149	ETHYLENE RESPONSE FACTOR 77	APETALA-2-like transcription factor OsAP2-39, ethylene response factor 77, APETALA2/ethylene-responsive element binding protein 149	ETHYLENE RESPONSE FACTOR 77		4		 Tolerance and resistance - Stress tolerance,  Other	Os04g0610400	LOC_Os04g52090.1				GO:0010366 - negative regulation of ethylene biosynthetic process, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
9701	NCED1	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3	9-CIS-EPOXYCAROTENOID DIOXYGENASE 1	9-cis-epoxycarotenoid dioxygenase 1, 9-Cis-Epoxycarotenoid Dioxygenase 3	9-CIS-EPOXYCAROTENOID DIOXYGENASE 1		3	LOC_Os03g44380. AC120531. AY838899. OsNCED3 in Welsch et al. 2008, Liu et al. 2012, Xu et al. 2013,  Teng et al. 2014 , Chen et al. 2014, Liang et al. 2014, Shi et al. 2015, Du et al. 2015, Li et al. 2015, Zhao et al. 2016, Hong et al. 2016, Mao et al. 2017, He et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0645900	LOC_Os03g44380.1				GO:0009414 - response to water deprivation, GO:0009688 - abscisic acid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0002237 - response to molecule of bacterial origin, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0006970 - response to osmotic stress	TO:0000175 - bacterial blight disease resistance, TO:0002667 - abscisic acid content, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
9702	_	OsRLG5	_	Oryza sativa Receptor like kinase Gene 5			1		 Biochemical character								
9703	ABCG5	OsABCG5	ABC TRANSPORTER G FAMILY MEMBER 5	ATP-binding cassette protein subfamily G member 5, ABC transporter superfamily ABCG subgroup member 5	ABC TRANSPORTER G FAMILY MEMBER 5		3		 Biochemical character	Os03g0281900	LOC_Os03g17350.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
9704	ABCG6	OsABCG6	ABC TRANSPORTER G FAMILY MEMBER 6	ATP-binding cassette protein subfamily G member 6, ABC transporter superfamily ABCG subgroup member 6	ABC TRANSPORTER G FAMILY MEMBER 6		3			Os03g0282100	LOC_Os03g17370.1						
9705	ABCG3	OsABCG3	ABC TRANSPORTER G FAMILY MEMBER 3	ATP-binding cassette protein subfamily G member 3, ABC transporter superfamily ABCG subgroup member 3	ABC TRANSPORTER G FAMILY MEMBER 3		1		 Biochemical character	Os01g0836600	LOC_Os01g61940.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
9706	_	OsGLK1, OsGlk1	_	light-related transcription factor OsGLK1, Golden2-like 1, G2-like 1			6	Q5Z5I4. orthologous to maize Golden2-like 1. AF318581.		Os06g0348800	LOC_Os06g24070.1				GO:0003677 - DNA binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010638 - positive regulation of organelle organization, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
9707	TRXM2	OsTRX m2, TRX m2, OsTRXM2	THIOREDOXIN M-TYPE 2	thioredoxin M2	THIOREDOXIN M-TYPE 2		4	Q7X8R5. a chloroplast m type thioredoxin.	 Biochemical character	Os04g0530600	LOC_Os04g44830.1				GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0006810 - transport, GO:0015035 - protein disulfide oxidoreductase activity		
9708	TRXM5	OsTRX m5, Ostrxm5, OsTRXM5	THIOREDOXIN M-TYPE 5	thioredoxin m, thioredoxin m-type, thioredoxin M5	THIOREDOXIN M-TYPE 5		12	LOC_Os12g08730. Q9ZP20. AJ005841. a chloroplast m type thioredoxin. XB21 interacting protein (XB21IP).	 Biochemical character	Os12g0188700	LOC_Os12g08730.1				GO:0009055 - electron carrier activity, GO:0009507 - chloroplast, GO:0006662 - glycerol ether metabolic process, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009657 - plastid organization, GO:0042744 - hydrogen peroxide catabolic process, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0006810 - transport		
9709	_	OsRpl6-2	_	mitochondrial ribosomal protein L6-2			8	CI260120. Os08g0484301 (in Rap3 (build5)).							GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation, GO:0019843 - rRNA binding		
9710	_	OsRpl6-1	_	mitochondrial ribosomal protein L6-1			3			Os03g0725000	LOC_Os03g51510.3, LOC_Os03g51510.2, LOC_Os03g51510.1				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation, GO:0019843 - rRNA binding		
9711	_	GADPH, OsGAPDHB, GAPDHB	_	glyceraldehyde-3-phosphate dehydrogenase, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic GAPDH B subunit			3	LOC_Os03g03720.	 Biochemical character,  Seed - Physiological traits - Taste	Os03g0129300	LOC_Os03g03720.2, LOC_Os03g03720.1				GO:0006006 - glucose metabolic process, GO:0050661 - NADP or NADPH binding, GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, GO:0051287 - NAD or NADH binding	TO:0000087 - aroma	
9712	_	BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2	_	rice 2-Cys peroxiredoxin BAS1, chloroplast 2-Cys peroxiredoxin BAS1, 2-Cys Prx BAS1, 2-Cys peroxiredoxin A, Peroxiredoxin 2			2	LOC_Os02g33450. a rice chloroplastic 2-Cys peroxiredoxin (thioredoxin peroxidase). Q6ER94. BAD27915. AM039889. XB21 interacting protein (XB21IP). a rice homologue gene of At2-CysPrxB. OsPRX2 in Mao et al. 2018. GO:0090332: stomatal closure. GO:0035864: response to potassium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0537700	LOC_Os02g33450.2, LOC_Os02g33450.1				GO:0042744 - hydrogen peroxide catabolic process, GO:0005515 - protein binding, GO:0042742 - defense response to bacterium, GO:0009555 - pollen development, GO:0010319 - stromule, GO:0048046 - apoplast, GO:0051920 - peroxiredoxin activity, GO:0009409 - response to cold, GO:0009570 - chloroplast stroma, GO:0004601 - peroxidase activity, GO:0009579 - thylakoid, GO:0009941 - chloroplast envelope, GO:0042594 - response to starvation	TO:0000008 - potassium sensitivity, TO:0002657 - oxidative stress	PO:0025281 - pollen , PO:0009010 - seed , PO:0001007 - pollen development stage , PO:0009006 - shoot system , PO:0025034 - leaf 
9713	_	RbcS, RbcS4, OsRBCS4, OsRbcS4	_	nuclear encoded small subunit of ribulose-1, 5-bisphosphate carboxylase/oxygenase, RuBisCO small subunit 4, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 4			12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0292400	LOC_Os12g19470.2, LOC_Os12g19470.1				GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0015979 - photosynthesis, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0004497 - monooxygenase activity, GO:0009853 - photorespiration	TO:0000011 - nitrogen sensitivity, TO:0000167 - cytokinin sensitivity	
9714	RPOTM	OsRpoTm	RNA POLYMERASE SUBUNIT TM	Nuclear-Encoded Mitochondrial RNA Polymerase	RNA POLYMERASE SUBUNIT TM		9	AB120431.	 Biochemical character	Os09g0246200	LOC_Os09g07120.2, LOC_Os09g07120.1				GO:0005739 - mitochondrion, GO:0003899 - DNA-directed RNA polymerase activity, GO:0003677 - DNA binding		
9715	YGL13	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA	YELLOW-GREEN LEAF 13	Sigma factor SIG1, plastid sigma factor SIG1, sigma A, sigma factor A, yellow-green leaf 13, yellow green leaf 13	SIGMA FACTOR A	ygl13	8	LOC_Os08g06630. AB005290.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others,  Other	Os08g0163400	LOC_Os08g06630.3, LOC_Os08g06630.1				GO:0003677 - DNA binding, GO:0006352 - transcription initiation, GO:0016987 - sigma factor activity, GO:0009416 - response to light stimulus, GO:0009658 - chloroplast organization, GO:0003700 - transcription factor activity	TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content	
9716	SIG2B	OsSIG2B	SIGMA FACTOR 2B	Sigma factor SIG2B	SIGMA FACTOR 2B		3	AB095095.	 Other	Os03g0271100	LOC_Os03g16430.2, LOC_Os03g16430.1				GO:0003700 - transcription factor activity, GO:0006352 - transcription initiation, GO:0016987 - sigma factor activity, GO:0003677 - DNA binding		
9717	SIG5	OsSIG5, OsSig5, Os Sig5	SIGMA FACTOR 5	Sigma factor SIG5, SIG5 homolog	SIGMA FACTOR 5		5	AB096011, AB096071.	 Other	Os05g0586600	LOC_Os05g50930.2, LOC_Os05g50930.1				GO:0009536 - plastid, GO:0006352 - transcription initiation, GO:0003899 - DNA-directed RNA polymerase activity, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0016987 - sigma factor activity		
9718	SIG6	OsSIG6, OsSig6	SIGMA FACTOR 6	Sigma factor SIG6	SIGMA FACTOR 6		8	AB096012.	 Other	Os08g0242800	LOC_Os08g14450.1				GO:0006352 - transcription initiation, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0016987 - sigma factor activity		
9719	PSAA	PsaA, psaA, PsAA1	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaA, photosystem I subunit PsaA, photosystem I P700 chlorophyll A apoprotein A1, PSI P700 apoprotein A1, photosystem I P700 apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A1			Pt	P0C354, P0C355. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46121: Nip050 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33996 (Japonica Group chloroplast genome). GU592207:ADD62834 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osp1g00340				GO:0009522 - photosystem I, GO:0000287 - magnesium ion binding, GO:0009055 - electron carrier activity, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0016168 - chlorophyll binding, GO:0016491 - oxidoreductase activity, GO:0018298 - protein-chromophore linkage, GO:0051539 - 4 iron, 4 sulfur cluster binding	TO:0000437 - male sterility	
9720	PSAB	PsaB, psaB, PsAA2	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaB, photosystem I subunit PsaB, photosystem I P700 apoprotein A2, PSI P700 apoprotein A2, P700 apoprotein a2, Photosystem I P700 chlorophyll a apoprotein A2			Pt	P0C357, P0C358. LOC_Osp1g00330. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46120: Nip049 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33995 (Japonica Group chloroplast genome). GU592207:ADD62833 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00330				GO:0016491 - oxidoreductase activity, GO:0016168 - chlorophyll binding, GO:0009522 - photosystem I, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0018298 - protein-chromophore linkage, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0010287 - plastoglobule, GO:0015979 - photosynthesis, GO:0000287 - magnesium ion binding, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane		
9721	SIG2A	OsSIG2A, OsSig2A	SIGMA FACTOR 2A	Sigma factor SIG2A, Sigma factor 2A	SIGMA FACTOR 2A		11	AB095094.	 Other	Os11g0448400	LOC_Os11g26160.1				GO:0016987 - sigma factor activity, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006352 - transcription initiation		
9722	SIG3	OsSIG3	SIGMA FACTOR 3	Sigma factor SIG3	SIGMA FACTOR 3		5		 Other	Os05g0589200	LOC_Os05g51150.5, LOC_Os05g51150.4, LOC_Os05g51150.3, LOC_Os05g51150.1				GO:0016987 - sigma factor activity, GO:0003700 - transcription factor activity, GO:0006352 - transcription initiation, GO:0003677 - DNA binding		
9723	_	OsGLK2, OsGlk2	_	light-related transcription factor OsGLK2, Golden2-like 2, G2-like 2			1	AF318582, AF318583.							GO:0003677 - DNA binding		
9724	NSP1	Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14	NODULATION SIGNALING PATHWAY 1	NODULATION SIGNALING PATHWAY1, Symbiotic GRAS-Type Transcription Factor NSP1, GRAS protein 14		nsp1	3	GO:2000032: regulation of secondary shoot formation.		Os03g0408600	LOC_Os03g29480.1				GO:0003700 - transcription factor activity, GO:0042446 - hormone biosynthetic process, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
9725	NSP2	Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13	NODULATION SIGNALING PATHWAY 2	NODULATION SIGNALING PATHWAY2, Symbiotic GRAS-Type Transcription Factor NSP2, GRAS protein 13	GRAS PROTEIN 13	nsp2	3			Os03g0263300	LOC_Os03g15680.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
9726	ENODL1	OsENODL1, OsELA1, ELA1	EARLY NODULIN LIKE PROTEIN 1	early nodulin-like protein 1, early nodulin-like arabinogalactan protein 1, eNod-like AGP 1	EARLY NODULIN LIKE PROTEIN 1		1	Q5JNJ5. EU282466. Phytocyanin. LOC_Os01g54430.	 Biochemical character	Os01g0748150	LOC_Os01g54430.1				GO:0005507 - copper ion binding, GO:0032578 - aleurone grain membrane, GO:0005773 - vacuole, GO:0009055 - electron carrier activity, GO:0031225 - anchored to membrane		
9727	ENODL2	OsENODL2	EARLY NODULIN LIKE PROTEIN 2	early nodulin-like protein 2	EARLY NODULIN LIKE PROTEIN 2		1	Phycocyanin. LOC_Os01g10480.		Os01g0201500	LOC_Os01g10480.1				GO:0016021 - integral to membrane		
9728	ENODL3	OsENODL3	EARLY NODULIN LIKE PROTEIN 3	early nodulin-like protein 3	EARLY NODULIN LIKE PROTEIN 3		1	Phycocyanin. LOC_Os01g16610.	 Biochemical character	Os01g0272700	LOC_Os01g16610.1				GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0046658 - anchored to plasma membrane		
9729	ENODL4	OsENODL4	EARLY NODULIN LIKE PROTEIN 4	early nodulin-like protein 4	EARLY NODULIN LIKE PROTEIN 4		1	Phycocyanin. LOC_Os01g17470.	 Biochemical character	Os01g0281600	LOC_Os01g17470.2, LOC_Os01g17470.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane		
9730	ENODL5	OsENODL5	EARLY NODULIN LIKE PROTEIN 5	early nodulin-like protein 5	EARLY NODULIN LIKE PROTEIN 5		1	Phytocyanin. C74750. LOC_Os01g57880.	 Biochemical character	Os01g0788700	LOC_Os01g57880.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9731	ENODL6	OsENODL6, OsELA2, ELA2, OsEnS-24	EARLY NODULIN LIKE PROTEIN 6	early nodulin-like protein 6, early nodulin-like arabinogalactan protein 2, endosperm-specific gene 24, eNod-like AGP 2	EARLY NODULIN LIKE PROTEIN 6		2	Phytocyanin. LOC_Os02g06670.	 Biochemical character	Os02g0162200	LOC_Os02g06690.1, LOC_Os02g06670.1				GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity		
9732	ENODL7	OsENODL7	EARLY NODULIN LIKE PROTEIN 7	early nodulin-like protein 7	EARLY NODULIN LIKE PROTEIN 7		2	Phytocyanin. LOC_Os02g06690. Os02g0162400 (in Rap2 (build4), Rap3 (build5)).	 Biochemical character						GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9733	ENODL8	OsENODL8	EARLY NODULIN LIKE PROTEIN 8	early nodulin-like protein 8	EARLY NODULIN LIKE PROTEIN 8		2	Phycocyanin. LOC_Os02g48820.	 Biochemical character	Os02g0720100	LOC_Os02g48820.1				GO:0016021 - integral to membrane, GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity		
9734	ENODL9	OsENODL9	EARLY NODULIN LIKE PROTEIN 9	early nodulin-like protein 9	EARLY NODULIN LIKE PROTEIN 9		2	Phytocyanin. CT835340. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Biochemical character	Os02g0725500	LOC_Os02g49350.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane		
9735	ENODL10	OsENODL10	EARLY NODULIN LIKE PROTEIN 10	early nodulin-like protein 10	EARLY NODULIN LIKE PROTEIN 10		3	Phycocyanin. LOC_Os03g02400.	 Biochemical character	Os03g0115000	LOC_Os03g02400.1				GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane		
9736	ENODL11	OsENODL11	EARLY NODULIN LIKE PROTEIN 11	early nodulin-like protein 11	EARLY NODULIN LIKE PROTEIN 11		3	Phycocyanin. LOC_Os03g44630.	 Biochemical character	Os03g0648500	LOC_Os03g44630.1				GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity		
9737	ENODL12	OsENODL12	EARLY NODULIN LIKE PROTEIN 12	early nodulin-like protein 12	EARLY NODULIN LIKE PROTEIN 12		3	Phycocyanin. LOC_Os03g55120.	 Biochemical character	Os03g0758500	LOC_Os03g55120.1				GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0046658 - anchored to plasma membrane, GO:0005507 - copper ion binding		
9738	ENODL13	OsENODL13	EARLY NODULIN LIKE PROTEIN 13	early nodulin-like protein 13	EARLY NODULIN LIKE PROTEIN 13		4	Phycocyanin. LOC_Os04g34480.	 Biochemical character	Os04g0422200	LOC_Os04g34480.1				GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9739	ENODL14	OsENODL14	EARLY NODULIN LIKE PROTEIN 14	early nodulin-like protein 14	EARLY NODULIN LIKE PROTEIN 14		4	Phycocyanin. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Biochemical character	Os04g0673800	LOC_Os04g57750.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane		
9740	ENODL15	OsENODL15	EARLY NODULIN LIKE PROTEIN 15	early nodulin-like protein 15	EARLY NODULIN LIKE PROTEIN 15		5	Phytocyanin. C73014. LOC_Os05g49580.	 Biochemical character	Os05g0570900	LOC_Os05g49580.1				GO:0016021 - integral to membrane, GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9741	ENODL16	OsENODL16	EARLY NODULIN LIKE PROTEIN 16	early nodulin-like protein 16	EARLY NODULIN LIKE PROTEIN 16		6	Phycocyanin. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Biochemical character	Os06g0286228	LOC_Os06g17730.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9742	ENODL17	OsENODL17	EARLY NODULIN LIKE PROTEIN 17	early nodulin-like protein 17	EARLY NODULIN LIKE PROTEIN 17		6	Phycocyanin. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Biochemical character	Os06g0553800	LOC_Os06g36010.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		PO:0009072 - plant ovary , PO:0009073 - stigma , PO:0009066 - anther 
9743	ENODL18	OsENODL18, OsELA3, ELA3	EARLY NODULIN LIKE PROTEIN 18	early nodulin-like protein 18, early nodulin-like arabinogalactan protein 3, eNod-like AGP 3	EARLY NODULIN LIKE PROTEIN 18		6	Phytocyanin. Cupredoxin domain containing protein. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0681200	LOC_Os06g46740.1				GO:0005507 - copper ion binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009010 - seed , PO:0009049 - inflorescence 
9744	ENODL19	OsENODL19	EARLY NODULIN LIKE PROTEIN 19	early nodulin-like protein 19	EARLY NODULIN LIKE PROTEIN 19		7	Phycocyanin. LOC_Os07g02200.	 Biochemical character	Os07g0112700	LOC_Os07g02200.1				GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9745	ENODL20	OsENODL20	EARLY NODULIN LIKE PROTEIN 20	early nodulin-like protein 20	EARLY NODULIN LIKE PROTEIN 20		8	Phytocyanin. AK109468. LOC_Os08g17160. Os08g0273300 (in Rap1 (build3), Rap3 (build5)).	 Biochemical character		LOC_Os08g17160				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9746	ENODL21	OsENODL21	EARLY NODULIN LIKE PROTEIN 21	early nodulin-like protein 21	EARLY NODULIN LIKE PROTEIN 21		9	Phycocyanin. LOC_Os09g38540.	 Biochemical character	Os09g0557900	LOC_Os09g38540.1				GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0005507 - copper ion binding		
9747	ENODL22	OsENODL22	EARLY NODULIN LIKE PROTEIN 22	early nodulin-like protein 22	EARLY NODULIN LIKE PROTEIN 22		11	Phycocyanin. LOC_Os11g29910.	 Biochemical character	Os11g0491500	LOC_Os11g29910.1				GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity		
9748	ENODL23	OsENODL23	EARLY NODULIN LIKE PROTEIN 23	early nodulin-like protein 23	EARLY NODULIN LIKE PROTEIN 23		12	Phycocyanin. LOC_Os12g05470.	 Biochemical character	Os12g0150500	LOC_Os12g05470.1				GO:0046658 - anchored to plasma membrane, GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9749	ENODL24	OsENODL24	EARLY NODULIN LIKE PROTEIN 24	early nodulin-like protein 24	EARLY NODULIN LIKE PROTEIN 24		12	Phytocyanin. CT835529. LOC_Os12g26880.	 Biochemical character	Os12g0454600	LOC_Os12g26880.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9750	UCL1	OsUCL1	UCLACYANIN-LIKE PROTEIN 1	uclacyanin-like protein 1	UCLACYANIN-LIKE PROTEIN		1	Phytocyanin. CI165732.		Os01g0786500	LOC_Os01g57690.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9751	UCL2	OsUCL2	UCLACYANIN-LIKE PROTEIN 2	uclacyanin-like protein 2	UCLACYANIN-LIKE PROTEIN 2		2	Phytocyanin.		Os02g0256800	LOC_Os02g15710.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9752	UCL3	OsUCL3	UCLACYANIN-LIKE PROTEIN 3	uclacyanin-like protein 3	UCLACYANIN-LIKE PROTEIN 3		2	Phytocyanin.		Os02g0257100	LOC_Os02g15730.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9753	UCL4	OsUCL4	UCLACYANIN-LIKE PROTEIN 4	uclacyanin-like protein 4	UCLACYANIN-LIKE PROTEIN 4		2	Phytocyanin. a basic blue copper protein.		Os02g0653200	LOC_Os02g43660.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9754	UCL5	OsUCL5	UCLACYANIN-LIKE PROTEIN 5	uclacyanin-like protein 5	UCLACYANIN-LIKE PROTEIN 5		2	Phytocyanin.		Os02g0731400	LOC_Os02g49850.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9755	UCL6	OsUCL6	UCLACYANIN-LIKE PROTEIN 6	uclacyanin-like protein 6	UCLACYANIN-LIKE PROTEIN 6		2	Phytocyanin.		Os02g0758800	LOC_Os02g52180.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9756	UCL7	OsUCL7	UCLACYANIN-LIKE PROTEIN 7	uclacyanin-like protein 7	UCLACYANIN-LIKE PROTEIN 7		3	Phytocyanin.		Os03g0259100	LOC_Os03g15340.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9757	UCL8	OsUCL8	UCLACYANIN-LIKE PROTEIN 8	uclacyanin-like protein 8, uclacyanin 8	UCLACYANIN-LIKE PROTEIN 8	ucl8	3	LOC_Os03g50140. Phycocyanin. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity	Os03g0709100	LOC_Os03g50140.1				GO:0070623 - regulation of thiamin biosynthetic process, GO:0009555 - pollen development, GO:0080092 - regulation of pollen tube growth, GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0055070 - copper ion homeostasis, GO:0010109 - regulation of photosynthesis	TO:0000396 - grain yield, TO:0000207 - plant height, TO:0000214 - anther shape, TO:0000180 - spikelet fertility, TO:0002600 - flower organ size, TO:0000447 - filled grain number	PO:0009010 - seed , PO:0000230 - inflorescence meristem 
9758	UCL9	OsUCL9	UCLACYANIN-LIKE PROTEIN 9	uclacyanin-like protein 9	UCLACYANIN-LIKE PROTEIN 9		3	Phytocyanin.		Os03g0709300	LOC_Os03g50160.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9759	UCL10	OsUCL10	UCLACYANIN-LIKE PROTEIN 10	uclacyanin-like protein 10	UCLACYANIN-LIKE PROTEIN 10		3	Phytocyanin.		Os03g0791300	LOC_Os03g57730.1						
9760	UCL11	OsUCL11	UCLACYANIN-LIKE PROTEIN 11	uclacyanin-like protein 11	UCLACYANIN-LIKE PROTEIN 11		3	Phytocyanin.		Os03g0791366	LOC_Os03g57740.1						
9761	UCL12	OsUCL12	UCLACYANIN-LIKE PROTEIN 12	uclacyanin-like protein 12, plastocyanin-like domain containing protein	UCLACYANIN-LIKE PROTEIN 12		3	Phytocyanin. LOC_Os03g63390. photosynthetic electron transport related gene.	 Biochemical character	Os03g0850900	LOC_Os03g63390.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9762	UCL13	OsUCL13	UCLACYANIN-LIKE PROTEIN 13	uclacyanin-like protein 13	UCLACYANIN-LIKE PROTEIN 13		4	Phytocyanin. Os04g0320800 (in Rap3 (build5)).									
9763	UCL14	OsUCL14	UCLACYANIN-LIKE PROTEIN 14	uclacyanin-like protein 14	UCLACYANIN-LIKE PROTEIN 14		4	Phytocyanin.		Os04g0545400	LOC_Os04g46120.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9764	UCL15	OsUCL15	UCLACYANIN-LIKE PROTEIN 15	uclacyanin-like protein 15	UCLACYANIN-LIKE PROTEIN 15		4	Phytocyanin.		Os04g0545600	LOC_Os04g46130.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9765	UCL16	OsUCL16	UCLACYANIN-LIKE PROTEIN 16	uclacyanin-like protein 16	UCLACYANIN-LIKE PROTEIN 16		6	Phytocyanin.		Os06g0218600	LOC_Os06g11490.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9766	UCL17	OsUCL17	UCLACYANIN-LIKE PROTEIN 17	uclacyanin-like protein 17	UCLACYANIN-LIKE PROTEIN 17		6	Phytocyanin.		Os06g0266400	LOC_Os06g15600.1						
9767	UCL18	OsUCL18	UCLACYANIN-LIKE PROTEIN 18	uclacyanin-like protein 18	UCLACYANIN-LIKE PROTEIN 18		6	Phytocyanin.		Os06g0718400	LOC_Os06g50420.1						
9768	UCL19	OsUCL19	UCLACYANIN-LIKE PROTEIN 19	uclacyanin-like protein 19	UCLACYANIN-LIKE PROTEIN 19		6	Phytocyanin.		Os06g0721800	LOC_Os06g50650.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9769	UCL20	OsUCL20	UCLACYANIN-LIKE PROTEIN 20	uclacyanin-like protein 20	UCLACYANIN-LIKE PROTEIN 20		7	Phytocyanin. AU162427.		Os07g0105000	LOC_Os07g01440.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9770	UCL21	OsUCL21	UCLACYANIN-LIKE PROTEIN 21	uclacyanin-like protein 21	UCLACYANIN-LIKE PROTEIN 21		7	Phytocyanin.		Os07g0165900	LOC_Os07g07170.1						
9771	UCL22	OsUCL22	UCLACYANIN-LIKE PROTEIN 22	uclacyanin-like protein 22	UCLACYANIN-LIKE PROTEIN 22		7	Phytocyanin. AU173380.		Os07g0542900	LOC_Os07g35860.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9772	UCL23	OsUCL23	UCLACYANIN-LIKE PROTEIN 23	uclacyanin-like protein 23	UCLACYANIN-LIKE PROTEIN 23		8	Phytocyanin.	 Tolerance and resistance - Stress tolerance	Os08g0137400	LOC_Os08g04310.1				GO:0009055 - electron carrier activity, GO:0009651 - response to salt stress, GO:0005507 - copper ion binding	TO:0006001 - salt tolerance	
9773	UCL24	OsUCL24	UCLACYANIN-LIKE PROTEIN 24	uclacyanin-like protein 24	UCLACYANIN-LIKE PROTEIN 24		8	Phytocyanin.		Os08g0137800	LOC_Os08g04340.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9774	UCL25	OsUCL25	UCLACYANIN-LIKE PROTEIN 25	uclacyanin-like protein 25	UCLACYANIN-LIKE PROTEIN 25		8	Phytocyanin.		Os08g0137900	LOC_Os08g04350.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9775	UCL26	OsUCL26	UCLACYANIN-LIKE PROTEIN 26	uclacyanin-like protein 26	UCLACYANIN-LIKE PROTEIN 26		8	Phytocyanin.		Os08g0138100	LOC_Os08g04360.1						
9776	UCL27	OsUCL27	UCLACYANIN-LIKE PROTEIN 27	uclacyanin-like protein 27	UCLACYANIN-LIKE PROTEIN 27		8	Phytocyanin. EE591745.		Os08g0138200	LOC_Os08g04370.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9777	UCL28	OsUCL28	UCLACYANIN-LIKE PROTEIN 28	uclacyanin-like protein 28	UCLACYANIN-LIKE PROTEIN 28		8	Phytocyanin.		Os08g0138400					GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9778	UCL29	OsUCL29	UCLACYANIN-LIKE PROTEIN 29	uclacyanin-like protein 29	UCLACYANIN-LIKE PROTEIN 29		8	Phytocyanin.		Os08g0482600	LOC_Os08g37660.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9779	UCL30	OsUCL30	UCLACYANIN-LIKE PROTEIN 30	uclacyanin-like protein 30	UCLACYANIN-LIKE PROTEIN 30		8	Phytocyanin.		Os08g0482700	LOC_Os08g37670.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9780	UCL31	OsUCL31	UCLACYANIN-LIKE PROTEIN 31	uclacyanin-like protein 31	UCLACYANIN-LIKE PROTEIN 31		9	Phytocyanin.		Os09g0469300	LOC_Os09g29390.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9781	UCL32	OsUCL32	UCLACYANIN-LIKE PROTEIN 32	uclacyanin-like protein 32	UCLACYANIN-LIKE PROTEIN 32		9	Phytocyanin. CI646724.		Os09g0541100	LOC_Os09g36940.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9782	UCL33	OsUCL33	UCLACYANIN-LIKE PROTEIN 33	uclacyanin-like protein 33	UCLACYANIN-LIKE PROTEIN 33		9	Phytocyanin. AGP (Arabinogalactan protein). 		Os09g0572700	LOC_Os09g39940.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0009010 - seed 
9783	UCL34	OsUCL34	UCLACYANIN-LIKE PROTEIN 34	uclacyanin-like protein 34	UCLACYANIN-LIKE PROTEIN 34		11	Phytocyanin. BE040849.		Os11g0426400	LOC_Os11g23930.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9784	UCL35	OsUCL35	UCLACYANIN-LIKE PROTEIN 35	uclacyanin-like protein 35	UCLACYANIN-LIKE PROTEIN 35		11	Phytocyanin.		Os11g0428800	LOC_Os11g24140.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9785	_	OsSCL1	_	stellacyanin-like protein 1			3	Phytocyanin. AK068398.		Os03g0807500	LOC_Os03g59280.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9786	_	OsSCL2	_	stellacyanin-like protein 2			4	Phytocyanin.		Os04g0629200	LOC_Os04g53710.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9787	_	OsSCL3	_	stellacyanin-like protein 3			6	Phytocyanin.		Os06g0216700	LOC_Os06g11310.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9788	_	ROX1	_	Regulator of XA21-1			1	positive regulator of XA21.	 Tolerance and resistance - Disease resistance	Os01g0931400	LOC_Os01g70580.1				GO:0009229 - thiamin diphosphate biosynthetic process, GO:0004788 - thiamin diphosphokinase activity, GO:0016301 - kinase activity, GO:0005524 - ATP binding, GO:0006772 - thiamin metabolic process		
9789	_	ROX2	_	Regulator of XA21-2			2	positive regulator of XA21.	 Tolerance and resistance - Disease resistance	Os02g0320100	LOC_Os02g21510.3, LOC_Os02g21510.2, LOC_Os02g21510.1						
9790	_	ROX3	_	Regulator of XA21-3			6	negative regulator of XA21.	 Tolerance and resistance - Disease resistance	Os06g0231300	LOC_Os06g12530.1						
9791	SD37	OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1	SEMIDWARF 37	Cytochrome P450 96B4, P-450 96B4, semi-dwarf 37	CYTOCHROME P450 96B4	dss1, sd37	3	OsCYP96B4 might be involved in lipid metabolism and regulate cell elongation. LOC_Os03g04680. ABF93896.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os03g0140300/Os03g0140400					GO:0005506 - iron ion binding, GO:0051301 - cell division, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010029 - regulation of seed germination, GO:0009414 - response to water deprivation, GO:0006629 - lipid metabolic process, GO:0005783 - endoplasmic reticulum, GO:0004497 - monooxygenase activity	TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000391 - seed size, TO:0000478 - abscisic acid concentration, TO:0006032 - panicle size, TO:0002637 - leaf size, TO:0002667 - abscisic acid content, TO:0002675 - gibberellic acid content	PO:0020148 - shoot apical meristem 
9792	_	OsMCA1	_	Plasma membrane protein OsMCA1			3	Ca2+-permeable mechanosensitive channel. OsMCA1 is involved in regulation of plasma membrane Ca2+ influx and ROS generation induced by hypo-osmotic stress in cultured rice cells.	 Tolerance and resistance - Stress tolerance	Os03g0157300	LOC_Os03g06120.3, LOC_Os03g06120.2, LOC_Os03g06120.1				GO:0070509 - calcium ion import, GO:0005887 - integral to plasma membrane, GO:0048528 - post-embryonic root development, GO:0007638 - mechanosensory behavior		
9793	_	OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492	_	Auxin signaling f-box 2, F-box protein 206			4	LOC_Os04g32460. Q7XVM8. a miR393 target gene. Os_F0492 in Hua et al. 2011. auxin receptor.	 Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os04g0395600	LOC_Os04g32460.2, LOC_Os04g32460.1				GO:0009734 - auxin mediated signaling pathway, GO:0019005 - SCF ubiquitin ligase complex, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0000822 - inositol hexakisphosphate binding, GO:0005634 - nucleus, GO:0010011 - auxin binding	TO:0000227 - root length, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity	
9794	_	OsTIR1, TIR1, OsFbox248, Os_F0717	_	transport inhibitor response 1, Transport Inhibitor Response1, F-box protein 248			5	LOC_Os05g05800. auxin receptor. Q0DKP3. a miR393 target gene. TO:0020102: phosphate content. Os_F0717 in Hua et al. 2011.	 Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os05g0150500	LOC_Os05g05800.1				GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0000822 - inositol hexakisphosphate binding, GO:0010011 - auxin binding, GO:0009734 - auxin mediated signaling pathway	TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000227 - root length	
9795	MIR393	OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a	MICRORNA393	MICRORNA393, MICRORNA393A	_		1	miRBASE accession: MI0001026. The overexpression of miR393 (miR393a and miR393b) negatively regulates mRNAs of OsTIR1 and OsAFB2. LM379278. GO:1901698: response to nitrogen compound.	 Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0009651 - response to salt stress, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0010311 - lateral root formation, GO:0035195 - gene silencing by miRNA, GO:0046688 - response to copper ion, GO:0035068 - micro-ribonucleoprotein complex	TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity, TO:0000315 - bacterial disease resistance, TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000346 - tiller number, TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity, TO:0000329 - tillering ability	
9796	_	OsGIF3, GIF3, OsGIF1, GIF1, MKB3	_	GRF1-interacting factor 3, GRF-interacting factor 3, Growth-regulating factor interacting factor 1, GRF interacting factor 1, MAKIBA3, MAKIBA 3		mkb3	3	LOC_Os03g52320. OsGIF1 in He et al. 2017, Shimano et al. 2018, Li et al. 2018. TO:0000892: stem size. an ortholog of Arabidopsis ANGUSTIFOLIA3 (AN3/GIF1). TO:0006064: rolled leaf. TO:1000024: palea morphology trait.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0733600	LOC_Os03g52320.2, LOC_Os03g52320.1				GO:0048481 - ovule development, GO:0005634 - nucleus, GO:0016049 - cell growth, GO:0022414 - reproductive process, GO:0048366 - leaf development, GO:0008283 - cell proliferation, GO:0009955 - adaxial/abaxial pattern formation, GO:0080060 - integument development, GO:0009555 - pollen development, GO:0010229 - inflorescence development	TO:0002637 - leaf size, TO:0000397 - grain size, TO:0000040 - panicle length, TO:0000655 - leaf development trait, TO:0002686 - cell growth and development trait, TO:0000657 - spikelet anatomy and morphology trait, TO:0000614 - lemma shape, TO:0000621 - inflorescence development trait, TO:0000485 - sterility related trait, TO:0000145 - internode length, TO:0000370 - leaf width	PO:0001050 - leaf development stage , PO:0000017 - vascular leaf primordium , PO:0007619 - ovule development stage , PO:0001007 - pollen development stage , PO:0001083 - inflorescence development stage 
9797	_	OsMGT6, OsMRS2-4	_	Magnesium transporter 6, MRS2/MGT family member 4			10	A3BV82.		Os10g0545000	LOC_Os10g39790.4, LOC_Os10g39790.3, LOC_Os10g39790.2				GO:0016021 - integral to membrane		
9798	_	PI3K	_	Phosphatidylinositol 3-kinase					 Biochemical character,  Character as QTL - Germination								
9799	_	Os rboh1	_	NADPH oxidase Os rboh1					 Biochemical character								
9800	_	Os rboh2	_	NADPH oxidase Os rboh2					 Biochemical character,  Character as QTL - Germination								
9801	_	Os rboh3	_	NADPH oxidase Os rboh3					 Biochemical character								
9802	_	Os rboh4	_	NADPH oxidase Os rboh4					 Biochemical character,  Character as QTL - Germination								
9803	_	Os rboh5	_	NADPH oxidase Os rboh5					 Biochemical character,  Character as QTL - Germination								
9804	_	Os rboh6	_	NADPH oxidase Os rboh6					 Biochemical character								
9805	_	Os rboh7	_	NADPH oxidase Os rboh7					 Biochemical character								
9806	_	Os rboh8	_	NADPH oxidase Os rboh8					 Biochemical character								
9807	_	Os rboh9	_	NADPH oxidase Os rboh9					 Biochemical character,  Character as QTL - Germination								
9808	BZIP23	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23	b-ZIP TRANSCRIPTION FACTOR 23	Transcription Factor OsbZIP23, bZIP transcription factor 23, AREB/ABF-family protein 1	b-ZIP TRANSCRIPTION FACTOR 23	Osbzip23	2	basic region/leucine zipper motif transcription factor. OsAREB2 in Ke et al. 2014, Li et al. 2017. GO:1901001: negative regulation of response to salt stress. OsbZIP23 promoter from O. rufipogon (KP779639), OsbZIP23 promoter from IR20 (KP779640), OsbZIP23 CDS from O. rufipogon (KP779637), OsbZIP23 CDS from O. nivara (KP779638).	 Tolerance and resistance - Stress tolerance,  Other	Os02g0766700	LOC_Os02g52780.2, LOC_Os02g52780.1				GO:0046983 - protein dimerization activity, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress, GO:0000302 - response to reactive oxygen species, GO:0009414 - response to water deprivation, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus, GO:0007623 - circadian rhythm	TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000136 - relative water content, TO:0000333 - sugar content, TO:0006002 - proline content, TO:0002657 - oxidative stress, TO:0000396 - grain yield	
9809	SAPK1	OsSAPK1	STRESS/ABA-ACTIVATED PROTEIN KINASE 1	stress/ABA-activated protein kinase 1, Stress-Activated Protein Kinase 1			3	SnRK2 protein kinase. AB125302. Q75LR7. C22414. LOC_Os03g27280. JF733759.	 Tolerance and resistance - Stress tolerance	Os03g0390200	LOC_Os03g27280.1				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity	
9810	SAPK2	OsSAPK2	STRESS/ABA-ACTIVATED PROTEIN KINASE 2	stress/ABA-activated protein kinase 2, Stress-Activated Protein Kinase 2	STRESS/ABA-ACTIVATED PROTEIN KINASE 2	sapk2, sapk2-1, sapk2-7	7	SnRK2 protein kinase. AB125303. Q0D4J7. A2YNT8.2 C22640. LOC_Os07g42940. JF733760. TtPK1 (Triticum tauschii protein kinase 1 ) ortholog.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os07g0622000	LOC_Os07g42940.9, LOC_Os07g42940.8, LOC_Os07g42940.7, LOC_Os07g42940.6, LOC_Os07g42940.5, LOC_Os07g42940.4, LOC_Os07g42940.3, LOC_Os07g42940.2, LOC_Os07g42940.1				GO:0009845 - seed germination, GO:0009738 - abscisic acid mediated signaling, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0006970 - response to osmotic stress, GO:0010162 - seed dormancy	TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000253 - seed dormancy	PO:0007057 - 0 seed germination stage 
9811	SAPK3	OsSAPK3, REK	STRESS/ABA-ACTIVATED PROTEIN KINASE 3	stress/ABA-activated protein kinase 3, rice endosperm protein kinase, Stress-Activated Protein Kinase 3	STRESS/ABA-ACTIVATED PROTEIN KINASE 3		10	SnRK2 protein kinase. AB125304. P0C5D6. AB002109, D88399. A2ZAB5. LOC_Os10g41490. JF733761.	 Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0564500	LOC_Os10g41490.3, LOC_Os10g41490.2, LOC_Os10g41490.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0005524 - ATP binding	TO:0000095 - osmotic response sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	
9812	SAPK4	OsSAPK4	STRESS/ABA-ACTIVATED PROTEIN KINASE 4	stress/ABA-activated protein kinase 4, Stress-Activated Protein Kinase 4	STRESS/ABA-ACTIVATED PROTEIN KINASE 4		1	SnRK2 protein kinase. AB125305. Q5N942. JF733762.	 Tolerance and resistance - Stress tolerance	Os01g0869900	LOC_Os01g64970.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation	TO:0000095 - osmotic response sensitivity	
9813	SAPK5	OsSAPK5	STRESS/ABA-ACTIVATED PROTEIN KINASE 5	stress/ABA-activated protein kinase 5, Stress-Activated Protein Kinase 5	STRESS/ABA-ACTIVATED PROTEIN KINASE 5		4	SnRK2 protein kinase. AB125306. Q7XKA8. C22640. LOC_Os04g59450. JF733763.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0691100	LOC_Os04g59450.3, LOC_Os04g59450.2, LOC_Os04g59450.1				GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0009738 - abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm	TO:0000095 - osmotic response sensitivity, TO:0000175 - bacterial blight disease resistance	
9814	SAPK6	OsSAPK6, OSRK1	STRESS/ABA-ACTIVATED PROTEIN KINASE 6	stress/ABA-activated protein kinase 6, Stress-Activated Protein Kinase 6	STRESS/ABA-ACTIVATED PROTEIN KINASE 6		2	SnRK2 protein kinase. AB125307. DQ285022. Q6ZI44. AU056506. LOC_Os02g34600. JF733764.	 Tolerance and resistance - Stress tolerance	Os02g0551100	LOC_Os02g34600.2, LOC_Os02g34600.1				GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
9815	SAPK7	OsSAPK7	STRESS/ABA-ACTIVATED PROTEIN KINASE 7	stress/ABA-activated protein kinase 7, Stress-Activated Protein Kinase 7	STRESS/ABA-ACTIVATED PROTEIN KINASE 7		4	SnRK2 protein kinase. AB125308. Q7XQP4. AU075635. LOC_Os04g35240. JF733765.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0432000	LOC_Os04g35240.1				GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000095 - osmotic response sensitivity	
9816	SAPK8	OsSAPK8	STRESS/ABA-ACTIVATED PROTEIN KINASE 8	stress/ABA-activated protein kinase 8, Stress-Activated Protein Kinase 8	STRESS/ABA-ACTIVATED PROTEIN KINASE 8		3	SnRK2 protein kinase. AB125309. Q7Y0B9. LOC_Os03g55600. JF733766. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait. 	 Tolerance and resistance - Stress tolerance	Os03g0764800	LOC_Os03g55600.1				GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009738 - abscisic acid mediated signaling, GO:0010118 - stomatal movement, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
9817	SAPK9	OsSAPK9	STRESS/ABA-ACTIVATED PROTEIN KINASE 9	stress/ABA-activated protein kinase 9, Stress-Activated Protein Kinase 9	STRESS/ABA-ACTIVATED PROTEIN KINASE 9		12	SnRK2 protein kinase. AB125310. Q75V57. LOC_Os12g39630. JF733767.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0586100	LOC_Os12g39630.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000175 - bacterial blight disease resistance	
9818	SAPK10	OsSAPK10	STRESS/ABA-ACTIVATED PROTEIN KINASE 10	stress/ABA-activated protein kinase 10, Stress-Activated Protein Kinase 10, Osmotic stress/abscisic acid-activated protein kinase 10	STRESS/ABA-ACTIVATED PROTEIN KINASE 10		3	SnRK2 protein kinase. AB125311. Q75H77. LOC_Os03g41460. JF733768. candidate gene for qSSR3.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0610900	LOC_Os03g41460.1				GO:0005524 - ATP binding, GO:0009738 - abscisic acid mediated signaling, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity	TO:0000615 - abscisic acid sensitivity, TO:0002665 - root hair length, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	
9819	TRAB1	OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5	TRANSCRIPTION FACTOR RESPONSIBLE FOR ABA REGULATION 1	basic region leucine zipper factor TRAB1, basic domain/Leu zipper factor TRAB1, transcription factor responsible for ABA regulation 1, bZIP transcription factor 66	TRANSCRIPTION FACTOR RESPONSIBLE FOR ABA REGULATION 1		8	LOC_Os08g36790. ABRE-binding factor. AB023288. Q6ZDF3.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0472000	LOC_Os08g36790.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:0046983 - protein dimerization activity, GO:0003700 - transcription factor activity		
9820	NH2	OsNH2, OsNPR2, OsNPR2/NH2	NPR1 HOMOLOG 2	NPR1-like 2, NPR1 homologue 2, nonexpresser of PR genes 2, Arabidopsis NPR1 homolog 2, non-expressor of pathogenesis-related gene2	NPR1 HOMOLOG 2		1	a rice ortholog of Arabidopsis thaliana NPR1. AY923984. DQ450950. 	 Tolerance and resistance - Disease resistance	Os01g0767900	LOC_Os01g56200.2, LOC_Os01g56200.1				GO:0005634 - nucleus, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0009817 - defense response to fungus, incompatible interaction		
9821	_	RH1	_	NRR Repressor Homologue 1			5			Os05g0368000	LOC_Os05g30500.1						
9822	_	RH2	_	NRR Repressor Homologue 2			1			Os01g0508500	LOC_Os01g32460.1						
9823	_	RH3	_	NRR Repressor Homologue 3			1			Os01g0508100	LOC_Os01g32380.1						
9824	_	NRR, NRR1	_	negative regulator of resistance			1	AY923981. NPR1 interactor.	 Tolerance and resistance - Disease resistance						GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome	TO:0000401 - plant growth hormone sensitivity, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance	
9825	TAD1	TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1	TILLERING AND DWARF 1	Tillering and Dwarf 1, cell cycle switch 52 A, cell cycle switch 52A, A-type cell cycle switch 52, tiller enhancer, HOMOLOGUE OF CDH1, CELL CYCLE SWITCH PROTEIN 52A 1	CO-ACTIVATOR OF APC/C	tad1, osccs52a, osccs52a-1, osccs52a-2	3	co-activator of the anaphase-promoting complex (APC/C), target MOC1 for degradation. TE acts as an activator of the anaphase promoting complex/cyclosome (APC/C) complex. CCS52A1 in Dedecker et al. 2016. LOC_Os03g03150.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os03g0123300	LOC_Os03g03150.2, LOC_Os03g03150.1				GO:0042023 - DNA endoreduplication, GO:0010091 - trichome branching, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0016049 - cell growth, GO:0032877 - positive regulation of DNA endoreduplication	TO:0000152 - panicle number, TO:0000346 - tiller number	
9826	_	OsAPC10	_					docking protein of anaphase-promoting complex/cyclosome (APC/C)	 Vegetative organ - Culm								
9827	PHP1	OsPHP1, Hpt1, OsHP3, OsHpt1	PSEUDO-PHOSPHOTRANSFER PROTEIN 1	pseudo-phosphotransfer protein 1			1	Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.		Os01g0743800 	LOC_Os01g54050.1				GO:0000160 - two-component signal transduction system (phosphorelay), GO:0004871 - signal transducer activity		
9828	PHP2	OsPHP2, Hpt4, OsHP5, OsHpt4	PSEUDO-PHOSPHOTRANSFER PROTEIN 2	pseudo-phosphotransfer protein 2			5	Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.		Os05g0186100 	LOC_Os05g09410.1				GO:0000160 - two-component signal transduction system (phosphorelay)		
9829	PHP3	OsPHP3, Hpt5, OsHP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c	PSEUDO-PHOSPHOTRANSFER PROTEIN 3	pseudo-phosphotransfer protein 3			5	Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.		Os05g0521300	LOC_Os05g44570.3, LOC_Os05g44570.2, LOC_Os05g44570.1, LOC_Os05g44560.1				GO:0007018 - microtubule-based movement, GO:0003777 - microtubule motor activity, GO:0005524 - ATP binding, GO:0005874 - microtubule		
9830	RR27	OsRR27, Rra16, OsPRR5, OsRRA16	B-TYPE RESPONSE REGULATOR 27	A-type RR 16, response regulator 27			5	B-type RR.		Os05g0395600	LOC_Os05g32880.1						
9831	RR28	OsRR28, Rra22, OsPRR3, OsRRA22	B-TYPE RESPONSE REGULATOR 28	A-type RR 22, response regulator 28.			4	B-type RR.		Os04g0349100 	LOC_Os04g28160.1						
9832	RR29	OsRR29, Rrb7, OsPRR4, OsRRB7	B-TYPE RESPONSE REGULATOR 29	B-type RR 7, response regulator 29			4			Os04g0348800 	LOC_Os04g28130.1				GO:0000156 - two-component response regulator activity, GO:0006355 - regulation of transcription, DNA-dependent		
9833	RR31	OsRR31	B-TYPE RESPONSE REGULATOR 31	response regulator 31			8	B-type RR.		Os08g0458400 	LOC_Os08g35650.1						
9834	_	OsRR32	_	response regulator 32			8	B-type RR.		Os08g0279900 	LOC_Os08g17760.1						
9835	RR33	OsRR33, Rra19, OsRRA19	B-TYPE RESPONSE REGULATOR 33	response regulator 33, A-type response regulator 19, A-type RR 19			8	B-type RR.		Os08g0458600 	LOC_Os08g35670.1				GO:0000156 - two-component response regulator activity, GO:0006355 - regulation of transcription, DNA-dependent		
9836	_	OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54	_	response regulator 41, A-type response regulator 14, response regulator 14, A-type RR 14, endosperm-specific gene 54			3	LOC_Os03g53100. type-C response regulator. 		Os03g0742300 	LOC_Os03g53100.1				GO:0000156 - two-component response regulator activity, GO:0006355 - regulation of transcription, DNA-dependent		
9837	_	OsRR42, Rra15, OsRR13, OsRRA15	_	response regulator 42, A-type response regulator 15, response regulator 13, A-type RR 15			4	type-C response regulator.		Os04g0212450 	LOC_Os04g13480.1						
9838	_	OsPRR10, Rra18, OsRRA18	_	pseudo-response regulator 10, A-type response regulator 18, A-type RR 18			5			Os05g0395700 	LOC_Os05g32890.1						
9839	_	OsPRR11	_	pseudo-response regulator 11			4			Os04g0349000 	LOC_Os04g28150.1						
9840	_	OsPRR12, Rra17, OsRRA17, OsEnS-61	_	pseudo-response regulator 12, A-type response regulator 17, A-type RR 17, endosperm-specific gene 61			4	LOC_Os04g28120.		Os04g0348600 	LOC_Os04g28120.1						
9841	HK1	OsHK1, OHK1	HISTIDINE KINASE 1	histidine kinase 1			6	His-kinase domain(HK), Receiver domain(Rec). LOS_Os06g444410.	 Biochemical character	Os06g0654300	LOC_Os06g44410.1				GO:0005524 - ATP binding, GO:0000156 - two-component response regulator activity, GO:0018106 - peptidyl-histidine phosphorylation, GO:0016020 - membrane, GO:0000155 - two-component sensor activity, GO:0006355 - regulation of transcription, DNA-dependent		
9842	IPT9	OsIPT9	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 9	adenosine phosphate isopentenyltransferase 9, isopentenyltransferase 9	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 9		1	LOC_Os01g73760. AB239806.	 Biochemical character	Os01g0968700 	LOC_Os01g73760.1				GO:0052381 - tRNA dimethylallyltransferase activity, GO:0005524 - ATP binding, GO:0009691 - cytokinin biosynthetic process, GO:0008033 - tRNA processing, GO:0005829 - cytosol, GO:0007131 - reciprocal meiotic recombination, GO:0009824 - adenylate dimethylallyltransferase activity		
9843	IPT10	OsIPT10	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 10	adenosine phosphate isopentenyltransferase 10, isopentenyltransferase 10	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 10		6	LOC_Os06g51350. AB239807.	 Biochemical character	Os06g0729800 	LOC_Os06g51350.1				GO:0016740 - transferase activity, GO:0005524 - ATP binding, GO:0009691 - cytokinin biosynthetic process, GO:0008033 - tRNA processing		
9844	_	CYP735A3	_	cytochrome 450 735A3			8	LOC_Os08g33300. cytokinin (CK) transhydroxylase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0429800 	LOC_Os08g33300.1				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
9845	_	CYP735A4, OsCYP735A4	_	cytochrome 450 735A4			9	LOC_Os09g23820. cytokinin (CK) transhydroxylase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0403300	LOC_Os09g23820.1				GO:0005506 - iron ion binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
9846	LOGL1	LOGL1	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 1	LOG LIKE phosphoribohydrolase 1, LOG LIKE 1	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 1		1	Q8LR50.	 Biochemical character	Os01g0708500	LOC_Os01g51210.2, LOC_Os01g51210.1				GO:0009691 - cytokinin biosynthetic process, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds		
9847	LOGL2	LOGL2	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 2	LOG LIKE phosphoribohydrolase 2, LOG LIKE 2	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 2		2	B9F166.	 Biochemical character	Os02g0628000	LOC_Os02g41770.1				GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9848	LOGL3	LOGL3	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 3	LOG LIKE phosphoribohydrolase 3, LOG LIKE 3	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 3		3	Q8H7U8.	 Biochemical character	Os03g0109300	LOC_Os03g01880.2, LOC_Os03g01880.1				GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9849	LOGL4	LOGL4	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 4	LOG LIKE phosphoribohydrolase 4, LOG LIKE 4	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 4		3	Q851C7.	 Biochemical character	Os03g0697200	LOC_Os03g49050.1				GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9850	LOGL5	LOGL5	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 5	LOG LIKE phosphoribohydrolase 5, LOG LIKE 5, LOG-LIKE 5	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 5		3	Q84M85. LOC_Os03g64070.	 Biochemical character	Os03g0857900	LOC_Os03g64070.1				GO:0080037 - negative regulation of cytokinin mediated signaling, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9851	LABA1	LOGL6, OsLOGL6, An-2	LONG AND BARBED AWN 1	LOG LIKE phosphoribohydrolase 6, LOG LIKE 6, LOG-like 6, Lonely Guy Like protein 6, long and barbed awn 1, Awn-2	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 6	laba1, an-2	4	Q0JBP5. a cytokinin-activating enzyme. a cytokinin riboside 5'-monophosphate phosphoribohydrolase. a homolog of rice LONELY GUY (LOG). KR703211, KR703212 (O. rufipogon).	 Biochemical character,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0518800	LOC_Os04g43840.1				GO:0009691 - cytokinin biosynthetic process, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009821 - alkaloid biosynthetic process, GO:0080038 - positive regulation of cytokinin mediated signaling, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds	TO:0000396 - grain yield, TO:0002660 - cytokinin content, TO:0000072 - awn length, TO:0002718 - awn anatomy and morphology trait, TO:0002759 - grain number, TO:0000346 - tiller number	
9852	LOGL7	LOGL7	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 7	LOG LIKE phosphoribohydrolase 7, LOG LIKE 7	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 7		5	Q5TKP8.	 Biochemical character	Os05g0541200	LOC_Os05g46360.3, LOC_Os05g46360.2, LOC_Os05g46360.1				GO:0009691 - cytokinin biosynthetic process, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds		
9853	LOGL8	LOGL8	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 8	LOG LIKE phosphoribohydrolase 8, LOG LIKE 8	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 8		5	Q0DFG8.	 Biochemical character	Os05g0591600	LOC_Os05g51390.2, LOC_Os05g51390.1				GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9854	LOGL9	LOGL9	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 9	LOG LIKE phosphoribohydrolase 9, LOG LIKE 9, OsLDC-like 1, lysine decarboxylase-like 1	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 9	osldc-like 1	9	B7E7M8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0547500	LOC_Os09g37540.1				GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9855	LOGL10	LOGL10	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 10	LOG LIKE phosphoribohydrolase 10, LOG LIKE 10	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 10		10	Q7XDB8.	 Biochemical character	Os10g0479500	LOC_Os10g33900.1				GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9856	ETR3	OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2	ETHYLENE RESPONSE 3				2	ethylene receptor. AY434735. AF420318.  LOC_Os02g57530.	 Biochemical character	Os02g0820900	LOC_Os02g57530.4, LOC_Os02g57530.3, LOC_Os02g57530.2, LOC_Os02g57530.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0018106 - peptidyl-histidine phosphorylation, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0000156 - two-component response regulator activity, GO:0000155 - two-component sensor activity, GO:0009723 - response to ethylene stimulus, GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time, TO:0000173 - ethylene sensitivity, TO:0000137 - days to heading	
9857	ERS1	OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS	ETHYLENE RECEPTOR 	ethylene responsive factor, ethylene response sensor 1		ers1, osers1	3	ethylene receptor. AY043031, AF013979. LOC_Os03g49500.		Os03g0701700	LOC_Os03g49500.2, LOC_Os03g49500.1				GO:0009723 - response to ethylene stimulus, GO:0000155 - two-component sensor activity, GO:0018106 - peptidyl-histidine phosphorylation, GO:0005524 - ATP binding	TO:0000173 - ethylene sensitivity	
9858	ERS2	OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c	ETHYLENE RECEPTOR				5	ethylene receptor. AF460181. LOC_Os05g06320.		Os05g0155200	LOC_Os05g06320.3, LOC_Os05g06320.2				GO:0000155 - two-component sensor activity, GO:0018106 - peptidyl-histidine phosphorylation, GO:0005524 - ATP binding		
9859	_	OsMYB2P-1	_	MYB2 phosphate-responsive gene 1				An R2R3 MYB transcription factor. TO:0020102: phosphate content.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance								
9860	PI1	OsIPS2, IPS2, OsPI1	PHOSPHATE-LIMITATION INDUCIBLE GENE 1	Oryza sativa Phosphate-limitation Inducible Gene 1, induced by phosphate starvation 2, phosphate starvation 2			1	BI796836. C19881. AU162218. TPSI1/Mt4 family gene. A phosphorus starvation induced gene OsIPS2. TO:0020102: phosphate content. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance	Os01g0838350					GO:0010167 - response to nitrate, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity	
9861	MIR399A	OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a	MICRORNA399A	microRNA399a, osa-miRNA399a	_		1	miRBASE accession: MI0001053. predicted target(s): Pho2. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) HM139902-HM139922.LM379297	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0051365 - cellular response to potassium ion starvation, GO:0010106 - cellular response to iron ion starvation, GO:0016036 - cellular response to phosphate starvation, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
9862	_	OsSQD	_	UDP-sulfoquinovose synthase					 Biochemical character								
9863	_	OsSPX1, SPX1	_	SPX (SYG/PHO81/XPR1) domain gene 1		spx1	6	LOC_Os06g40120. Q69XJ0. TO:0020102: phosphate content. Pi signaling pathway, TO:0020098: nitrate sensitivity.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os06g0603600	LOC_Os06g40120.1				GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0070417 - cellular response to cold, GO:0080040 - positive regulation of cellular response to phosphate starvation, GO:0010167 - response to nitrate, GO:0042594 - response to starvation	TO:0002688 - leaf lamina joint bending, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000102 - phosphorus sensitivity, TO:0000206 - leaf angle	
9864	MIR399D	OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d	MICRORNA399D	microRNA399d, osa-miRNA399d	_		6	miRBASE accession: MI0001056. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) HM139923-HM139967 (O. sativa, O. rufipogon, O. barthii). GO:0072732: cellular response to calcium ion starvation.LM379300	 Tolerance and resistance - Stress tolerance,  Other						GO:0016036 - cellular response to phosphate starvation, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0051365 - cellular response to potassium ion starvation, GO:0010106 - cellular response to iron ion starvation		
9866	CYP71Z6	Oscyp71Z6	P-450 71Z6	Cytochrome P450 71Z6	CYTOCHROME P450 71Z6		2	a phytocassane biosynthetic gene. A3A871. GO:0036201: ent-isokaurene C2-hydroxylase activity.	 Biochemical character	Os02g0570500	LOC_Os02g36150.1				GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0016102 - diterpenoid biosynthetic process		
9867	CYP71Z7	Oscyp71Z7	P-450 71Z7	Cytochrome P450 71Z7	CYTOCHROME P450 71Z7		2	LOC_Os02g36190. a phytocassane biosynthetic gene. Q6YV88. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0570700	LOC_Os02g36190.1				GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0009411 - response to UV, GO:0016102 - diterpenoid biosynthetic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0055114 - oxidation reduction, GO:0016021 - integral to membrane	TO:0000160 - UV light sensitivity	
9868	CYP76M5	CYP76M5	P-450 76M5	Cytochrome P450 76M5	CYTOCHROME P450 76M5		2	a phytocassane biosynthetic gene.	 Biochemical character	Os02g0569000	LOC_Os02g36030.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding		
9869	CYP76M6	CYP76M6	P-450 76M6	Cytochrome P450 76M6	CYTOCHROME P450 76M6		2	a phytocassane biosynthetic gene.	 Biochemical character	Os02g0571900	LOC_Os02g36280.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity		
9870	CYP76M7	OsCYP76M7, CYP76M10, OsCYP76M10	P-450 76M7	Cytochrome P450 76M7	CYTOCHROME P450 76M7		2	LOC_Os02g36110. a phytocassane biosynthetic gene. an ent-Cassadiene C11alpha-Hydroxylase. metabolite: Phytocassane D. CYP76M10 in Brazier-Hicks et al. 2017.	 Biochemical character,  Vegetative organ - Culm	Os02g0569900	LOC_Os02g36110.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane	TO:0002675 - gibberellic acid content, TO:0000207 - plant height	
9871	CYP76M8	CYP76M8	P-450 76M8	Cytochrome P450 76M8	CYTOCHROME P450 76M8		2	a phytocassane biosynthetic gene. Q6YTF1. GO:0036202: ent-cassa-12,15-diene 11-hydroxylase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0569400	LOC_Os02g36070.1				GO:0005506 - iron ion binding, GO:0016102 - diterpenoid biosynthetic process, GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0009411 - response to UV, GO:0020037 - heme binding	TO:0000160 - UV light sensitivity	
9873	_	OsMASL	_				4	a momilactone biosynthetic gene.	 Biochemical character								
9874	TPKC	TPKc, OsTPKc	TWO-PORE K+ CHANNEL C	two-pore K+ channel c	TWO-PORE K+ CHANNEL C				 Biochemical character								
9875	BC14	BC14, OsNST1	BRITTLE CULM 14	brittle culm 14, Oryza sativa nucleotide sugar transport 1, nucleotide sugar transport 1, Nucleotide Sugar Transporter1		bc14, Osnst1	2		 Vegetative organ - Culm	Os02g0614100	LOC_Os02g40030.2, LOC_Os02g40030.1				GO:0016021 - integral to membrane		
9876	_	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1	NUCLEOSIDE DIPHOSPHATE KINASE 1	nucleoside diphosphate kinase 1, Nucleoside diphosphate kinase, 16.8 kDa NDK, NDP kinase	NUCLEOSIDE DIPHOSPHATE KINASE 1		7	LOC_Os07g30970. Q07661. D16292, D10431.	 Biochemical character	Os07g0492000	LOC_Os07g30970.2, LOC_Os07g30970.1				GO:0006228 - UTP biosynthetic process, GO:0046872 - metal ion binding, GO:0004550 - nucleoside diphosphate kinase activity, GO:0005524 - ATP binding, GO:0006183 - GTP biosynthetic process, GO:0006241 - CTP biosynthetic process		
9877	YSS2	OsNDPK2, NDPK2, BIP114	YOUNG SEEDLING STRIPE 2	nucleoside diphosphate kinase 2, brassinosteroid receptor kinase (BRI1)-interacting protein 114, BRI1-interacting protein 114, brassinosteroid receptor kinase-interacting protein 114	NUCLEOSIDE DIPHOSPHATE KINASE 2	yss2	12	LOC_Os12g36194. AB118001. TO:0006060: leaf chlorosis.	 Biochemical character,  Coloration - Chlorophyll	Os12g0548300	LOC_Os12g36194.1				GO:0004550 - nucleoside diphosphate kinase activity, GO:0009742 - brassinosteroid mediated signaling, GO:0005524 - ATP binding, GO:0009658 - chloroplast organization, GO:0006183 - GTP biosynthetic process, GO:0006228 - UTP biosynthetic process, GO:0006241 - CTP biosynthetic process	TO:0000201 - panicle color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0002677 - brassinosteroid sensitivity, TO:0000326 - leaf color, TO:0000346 - tiller number	
9878	NDPK3	OsNDPK3	NUCLEOSIDE DIPHOSPHATE KINASE 3	nucleoside diphosphate kinase 3	NUCLEOSIDE DIPHOSPHATE KINASE 3		5	LOC_Os05g51700.	 Biochemical character	Os05g0595400	LOC_Os05g51700.3, LOC_Os05g51700.2, LOC_Os05g51700.1				GO:0005524 - ATP binding, GO:0006183 - GTP biosynthetic process, GO:0004550 - nucleoside diphosphate kinase activity, GO:0006241 - CTP biosynthetic process, GO:0006228 - UTP biosynthetic process		
9879	AHL1	OsAHL1	AT-HOOK MOTIF DNA-BINDING PROTEIN 1	AT-hook motif DNA-binding protein 1	AT-HOOK MOTIF DNA-BINDING PROTEIN 1												
9880	AHL2	OsAHL2	AT-HOOK MOTIF DNA-BINDING PROTEIN 2	AT-hook motif DNA-binding protein 2	AT-HOOK MOTIF DNA-BINDING PROTEIN 2												
9881	AHL3	OsAHL3	AT-HOOK MOTIF DNA-BINDING PROTEIN 3	AT-hook motif DNA-binding protein 3	AT-HOOK MOTIF DNA-BINDING PROTEIN 3												
9882	AHL4	OsAHL4	AT-HOOK MOTIF DNA-BINDING PROTEIN 4	AT-hook motif DNA-binding protein 4	AT-HOOK MOTIF DNA-BINDING PROTEIN 4												
9883	AHL5	OsAHL5	AT-HOOK MOTIF DNA-BINDING PROTEIN 5	AT-hook motif DNA-binding protein 5	AT-HOOK MOTIF DNA-BINDING PROTEIN 5												
9884	AHL6	OsAHL6	AT-HOOK MOTIF DNA-BINDING PROTEIN 6	AT-hook motif DNA-binding protein 6	AT-HOOK MOTIF DNA-BINDING PROTEIN 6												
9885	AHL7	OsAHL7	AT-HOOK MOTIF DNA-BINDING PROTEIN 7	AT-hook motif DNA-binding protein 7	AT-HOOK MOTIF DNA-BINDING PROTEIN 7												
9886	AHL8	OsAHL8	AT-HOOK MOTIF DNA-BINDING PROTEIN 8	AT-hook motif DNA-binding protein 8	AT-HOOK MOTIF DNA-BINDING PROTEIN 8												
9887	AHL9	OsAHL9	AT-HOOK MOTIF DNA-BINDING PROTEIN 9	AT-hook motif DNA-binding protein 9	AT-HOOK MOTIF DNA-BINDING PROTEIN 9												
9888	AHL10	OsAHL10	AT-HOOK MOTIF DNA-BINDING PROTEIN 10	AT-hook motif DNA-binding protein 10	AT-HOOK MOTIF DNA-BINDING PROTEIN 10												
9889	AHL11	OsAHL11	AT-HOOK MOTIF DNA-BINDING PROTEIN 11	AT-hook motif DNA-binding protein 11	AT-HOOK MOTIF DNA-BINDING PROTEIN 11												
9890	AHL12	OsAHL12	AT-HOOK MOTIF DNA-BINDING PROTEIN 12	AT-hook motif DNA-binding protein 12	AT-HOOK MOTIF DNA-BINDING PROTEIN 12												
9891	AHL13	OsAHL13	AT-HOOK MOTIF DNA-BINDING PROTEIN 13	AT-hook motif DNA-binding protein 13	AT-HOOK MOTIF DNA-BINDING PROTEIN 13												
9892	AHL14	OsAHL14	AT-HOOK MOTIF DNA-BINDING PROTEIN 14	AT-hook motif DNA-binding protein 14	AT-HOOK MOTIF DNA-BINDING PROTEIN 14												
9893	AHL15	OsAHL15	AT-HOOK MOTIF DNA-BINDING PROTEIN 15	AT-hook motif DNA-binding protein 15	AT-HOOK MOTIF DNA-BINDING PROTEIN 15												
9894	AHL16	OsAHL16	AT-HOOK MOTIF DNA-BINDING PROTEIN 16	AT-hook motif DNA-binding protein 16	AT-HOOK MOTIF DNA-BINDING PROTEIN 16												
9895	AHL17	OsAHL17	AT-HOOK MOTIF DNA-BINDING PROTEIN 17	AT-hook motif DNA-binding protein 17	AT-HOOK MOTIF DNA-BINDING PROTEIN 17												
9896	AHL18	OsAHL18	AT-HOOK MOTIF DNA-BINDING PROTEIN 18	AT-hook motif DNA-binding protein 18	AT-HOOK MOTIF DNA-BINDING PROTEIN 18												
9897	AHL19	OsAHL19	AT-HOOK MOTIF DNA-BINDING PROTEIN 19	AT-hook motif DNA-binding protein 19	AT-HOOK MOTIF DNA-BINDING PROTEIN 19												
9898	AHL20	OsAHL20	AT-HOOK MOTIF DNA-BINDING PROTEIN 20	AT-hook motif DNA-binding protein 20	AT-HOOK MOTIF DNA-BINDING PROTEIN 20												
9899	OLE4	OsOLE4, Os-OLE4	OLEOSIN 4	oleosin 4	OLEOSIN 4		9			Os09g0324000	LOC_Os09g15520.1				GO:0012511 - monolayer-surrounded lipid storage body, GO:0016021 - integral to membrane		
9900	OLE1	OsOLE1, Os-OLE1	OLEOSIN 1	oleosin 1	OLEOSIN 1												
9901	OLE2	OsOLE2, Os-OLE2	OLEOSIN 2	oleosin 2	OLEOSIN 2												
9902	OLE3	OsOLE3, Os-OLE3	OLEOSIN 3	oleosin 3	OLEOSIN 3												
9903	OLE5	OsOLE5, Os-OLE5	OLEOSIN 5	oleosin 5	OLEOSIN 5												
9904	OLE6	OsOLE6, Os-OLE6	OLEOSIN 6	oleosin 6	OLEOSIN 6												
9905	TRXH2	OsTRXh2, Os2, OsTrxh2	THIOREDOXIN H-TYPE 2	Thioredoxin H-type 2, H-type Thioredoxin 2, thioredoxin h2	THIOREDOXIN H-TYPE 2		5		 Biochemical character	Os05g0508500	LOC_Os05g43252.2, LOC_Os05g43252.1				GO:0006662 - glycerol ether metabolic process, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity		
9906	TRXH3	OsTRXh3, OsTrx26, antiSTR1	THIOREDOXIN H-TYPE 3	Thioredoxin H-type 3, H-type Thioredoxin 3, Thioredoxin 26	THIOREDOXIN H-TYPE 3		9	Q6ES52. a natural antisense transcript (cis-NAT) of STR1.	 Biochemical character	Os09g0401200	LOC_Os09g23650.1				GO:0005488 - binding, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0006810 - transport		
9907	TRXH4	OsTRXh4, OsTrx10, Os3, OsTrxh3	THIOREDOXIN H-TYPE 4	Thioredoxin H-type 4, H-type Thioredoxin 4, Thioredoxin 10, thioredoxin h3	THIOREDOXIN H-TYPE 4		3	LOC_Os03g58630. Q851R5. Os3(thioredoxin h3) in Gelhaye et al. 2005.	 Biochemical character	Os03g0800700	LOC_Os03g58630.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0006810 - transport, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0022900 - electron transport chain		
9908	TRXH5	OsTRXh5, OsTrx24, Os4, OsTrxh4	THIOREDOXIN H-TYPE 5	Thioredoxin H-type 5, H-type Thioredoxin 5, Thioredoxin 24, thioredoxin h4	THIOREDOXIN H-TYPE 5		7	Q6Z4I3. CB681257. Os4(thioredoxin h4) in Gelhaye et al. 2005.	 Biochemical character	Os07g0190800	LOC_Os07g09310.2, LOC_Os07g09310.1				GO:0022900 - electron transport chain, GO:0005737 - cytoplasm, GO:0006662 - glycerol ether metabolic process, GO:0006810 - transport, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
9910	TRXH7	OsTRXh7, OsTrx1	THIOREDOXIN H-TYPE 7	Thioredoxin H-type 7, H-type Thioredoxin 7, Thioredoxin 1	THIOREDOXIN H-TYPE 7		1	Q9AS75. OsTrx1 in Esfahani and Shahpiri 2014, Shahriari-Farfani et al. 2018.	 Biochemical character	Os01g0168200	LOC_Os01g07376.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0006662 - glycerol ether metabolic process, GO:0006810 - transport, GO:0009055 - electron carrier activity		
9911	TRXH8	OsTRXh8, OsTrx18, Os5, OsTrxh5	THIOREDOXIN H-TYPE 8	Thioredoxin H-type 8, H-type Thioredoxin 8, Thioredoxin 18, thioredoxin h5	THIOREDOXIN H-TYPE 8		5	Q0DKF1. AF435817. Os5(thioredoxin h5) in Gelhaye et al. 2005.	 Biochemical character	Os05g0169000	LOC_Os05g07690.3, LOC_Os05g07690.2, LOC_Os05g07690.1				GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0005737 - cytoplasm, GO:0006662 - glycerol ether metabolic process, GO:0006810 - transport, GO:0022900 - electron transport chain		
9912	TRXH9	OsTRXh9, OsTrx20	THIOREDOXIN H-TYPE 9	Thioredoxin H-type 9, H-type Thioredoxin 9, Thioredoxin 20	THIOREDOXIN H-TYPE 9		5	Q75GM1. OsTrx20 in Esfahani and Shahpiri 2014, Shahriari-Farfani et al. 2018.	 Biochemical character	Os05g0480200	LOC_Os05g40190.1				GO:0006810 - transport, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0006662 - glycerol ether metabolic process		
9913	TRXH10	OsTRXh10, OsTRX2, TRX2, TRXF, OsTRXF	THIOREDOXIN H-TYPE 10	Thioredoxin H-type 10, H-type Thioredoxin 10	THIOREDOXIN H-TYPE 10		1	Q8S091. TRXF in Zhang et al. 2015.	 Biochemical character	Os01g0913000	LOC_Os01g68480.1				GO:0022900 - electron transport chain, GO:0016209 - antioxidant activity, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity, GO:0006662 - glycerol ether metabolic process, GO:0006810 - transport, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
9914	HMA2	OsHMA2, osHMA2, OsHMA2v	HEAVY METAL ATPASE 2	heavy metal ATPase 2, heavy metal transporter 2, heavy metal P-Type ATPase 2, heavy metal P1B-ATPase 2	HEAVY METAL ATPASE 2	oshma2-1, oshma2-2, osham2-3	6	LOC_Os06g48720. HQ646362. P1B-ATPase heavy-metal transporter. GO:0071577:zinc ion transmembrane transport. TO:0006059: cadmium concentration.TO:0006059: cadmium content trait.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os06g0700700	LOC_Os06g48720.1				GO:0006829 - zinc ion transport, GO:0046872 - metal ion binding, GO:0046873 - metal ion transmembrane transporter activity, GO:0005524 - ATP binding, GO:0006754 - ATP biosynthetic process, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0016021 - integral to membrane, GO:0032025 - response to cobalt ion, GO:0046686 - response to cadmium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0070574 - cadmium ion transmembrane transport, GO:0055069 - zinc ion homeostasis, GO:0015691 - cadmium ion transport, GO:0015086 - cadmium ion transmembrane transporter activity, GO:0010043 - response to zinc ion		PO:0009005 - root 
9915	_	OsFRO1	_	ferric reductase oxidase 1	_		3	AB126084. Os04g0444800.	 Biochemical character						GO:0009507 - chloroplast, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009416 - response to light stimulus, GO:0005506 - iron ion binding, GO:0009767 - photosynthetic electron transport chain, GO:0000293 - ferric-chelate reductase activity, GO:0050660 - FAD binding, GO:0009055 - electron carrier activity		
9917	_	OsGSNOR, GSNOR, GSNOR1, OsGSNOR1	_	S-nitrosoglutathione reductase, S-nitrosoglutathione reductase 1			2	Q0DWH1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0815500	LOC_Os02g57040.3, LOC_Os02g57040.2, LOC_Os02g57040.1				GO:0009651 - response to salt stress, GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity, GO:0009751 - response to salicylic acid stimulus, GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0006069 - ethanol oxidation, GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance	
9918	_	OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR	_				2	nitrate reductase.	 Biochemical character	Os02g0770800	LOC_Os02g53130.1				GO:0042128 - nitrate assimilation, GO:0030151 - molybdenum ion binding, GO:0005506 - iron ion binding, GO:0050660 - FAD binding, GO:0006809 - nitric oxide biosynthetic process, GO:0009416 - response to light stimulus, GO:0009703 - nitrate reductase (NADH) activity, GO:0009610 - response to symbiotic fungus, GO:0043546 - molybdopterin cofactor binding, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0009055 - electron carrier activity, GO:0020037 - heme binding		
9919	_	OsNIA2	_					nitrate reductase.	 Biochemical character								
9920	_	OsDIS1	_	drought-induced SINA protein 1, drought induced seven in absentia (SINA) protein 1, drought induced seven in absentia protein 1			3	a SINA type E3 ligase which is involved in the drought-stress signal transduction.	 Tolerance and resistance - Stress tolerance	Os03g0356414	LOC_Os03g24040.1				GO:0005634 - nucleus, GO:0004842 - ubiquitin-protein ligase activity, GO:0008270 - zinc ion binding, GO:0007275 - multicellular organismal development, GO:0006511 - ubiquitin-dependent protein catabolic process		
9921	_	OsNek6	_	NIMA-related kinase 6			2	Q6YY75.	 Tolerance and resistance - Stress tolerance	Os02g0590800	LOC_Os02g37830.2, LOC_Os02g37830.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
9922	SKIPA	OsSKIPa, OsSKIP, SKIP	SKI INTERACTING PROTEIN A	Ski-interacting protein	SKI INTERACTING PROTEIN A		2	a drought and salt positive regulator. a rice homolog of human Ski-interacting protein (SKIP). LOC_Os02g52250. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Tolerance and resistance - Stress tolerance	Os02g0759800	LOC_Os02g52250.1				GO:0009651 - response to salt stress, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005681 - spliceosomal complex	TO:0006001 - salt tolerance	
9923	SKIPB	OsSKIPb	SKI INTERACTING PROTEIN B		SKI INTERACTING PROTEIN B		6	LOC_Os06g11420. a rice homolog of human Ski-interacting protein (SKIP). OsSKIPb is most likely nonfunctional or apseudogene.		Os06g0218000	LOC_Os06g11420.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005681 - spliceosomal complex		
9924	NYC4	OsNYC4	NON-YELLOW COLORING4				7	LOC_Os07g37250. Q84PB7. stay-green. GO:1902458: positive regulation of stomatal opening. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:2000070: regulation of response to water deprivation.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os07g0558500	LOC_Os07g37250.1				GO:0045037 - protein import into chloroplast stroma, GO:0009528 - plastid inner membrane, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0010182 - sugar mediated signaling, GO:0009707 - chloroplast outer membrane, GO:0010027 - thylakoid membrane organization, GO:0010319 - stromule, GO:0015996 - chlorophyll catabolic process, GO:0010207 - photosystem II assembly, GO:0010150 - leaf senescence, GO:0045038 - protein import into chloroplast thylakoid membrane	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9925	_	OsNek1	_	NIMA-related kinase 1			3	Q10GB1.	 Biochemical character	Os03g0636800	LOC_Os03g43590.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
9926	_	OsNek2	_	NIMA-related kinase 2			12	Q2QMH1.	 Biochemical character	Os12g0604700	LOC_Os12g41180.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
9927	_	OsNek3, OsSTA192	_	NIMA-related kinase 3			7	Q6ZEZ5. Cytoplasmic Male Sterility-Related Protein Kinase. LOC_Os07g08000. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0176600	LOC_Os07g08000.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009066 - anther 
9928	_	OsNek4	_	NIMA-related kinase 4			5	Q60DG4.	 Biochemical character	Os05g0440800	LOC_Os05g36960.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
9929	_	OsNek5	_	NIMA-related kinase 5			1	Q94CU5.	 Biochemical character	Os01g0864700	LOC_Os01g64490.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
9930	_	OsBIRF1	_					a benzothiadiazole-induced RING finger E3 ligase.	 Biochemical character,  Tolerance and resistance								
9931	_	OsPLIM2a	_				2	a LIM domain-containing protein.		Os02g0641000	LOC_Os02g42820.1				GO:0008270 - zinc ion binding		
9932	_	OsPLIM2c	_				10	a LIM domain-containing protein.		Os10g0503100	LOC_Os10g35930.1				GO:0008270 - zinc ion binding		
9933	_	SIP1, EIP5	_	SKIP interacting protein 1, SKIPa-interacting protein 1, SKIPa-interacting protein 1, EBR1-interacting protein 5			1	EU368691. LOC_Os01g61760.		Os01g0834100 	LOC_Os01g61760.4, LOC_Os01g61760.3, LOC_Os01g61760.2, LOC_Os01g61760.1				GO:0007049 - cell cycle, GO:0005856 - cytoskeleton		
9934	_	SIP2	_	SKIP interacting protein 2, SKIPa-interacting protein 2, SKIPa-interacting protein 2			6	EU368692. LOC_Os06g27970.		Os06g0474200 	LOC_Os06g27970.1				GO:0005634 - nucleus, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0009506 - plasmodesma, GO:0006396 - RNA processing, GO:0005856 - cytoskeleton, GO:0000278 - mitotic cell cycle		
9935	_	SIP3	_	SKIP interacting protein 3, SKIPa-interacting protein 3, SKIPa-interacting protein 3			8	EU368693. LOC_Os08g37500.		Os08g0481100 	LOC_Os08g37500.1						
9939	_	SIP7	_	SKIP interacting protein 7, SKIPa-interacting protein 7, SKIPa-interacting protein 7			2	EU368697. LOC_Os02g15980.	 Reproductive organ - panicle	Os02g0260500 	LOC_Os02g15980.1				GO:0010229 - inflorescence development, GO:0000902 - cell morphogenesis	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
9940	_	SIP8	_	SKIP interacting protein 8, SKIPa-interacting protein 8, SKIPa-interacting protein 8			10	EU368698. LOC_Os10g27480.		Os10g0414800 	LOC_Os10g27480.1				GO:0016021 - integral to membrane		
9941	_	SIP9	_	SKIP interacting protein 9, SKIPa-interacting protein 9, SKIPa-interacting protein 9			2	EU368699. LOC_Os02g02690.		Os02g0119100	LOC_Os02g02690.1				GO:0051225 - spindle assembly, GO:0070652 - HAUS complex		
9942	_	SIP10	_	SKIP interacting protein 10, SKIPa-interacting protein 10, SKIPa-interacting protein 10			5	EU368700. LOC_Os05g07860.		Os05g0170800 	LOC_Os05g07860.1						
9946	_	SIP14	_	SKIP interacting protein 14, SKIPa-interacting protein 14, SKIPa-interacting protein 14			2	EU368704. LOC_Os02g19140. GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os02g0293400 	LOC_Os02g19140.1				GO:0016874 - ligase activity, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0008270 - zinc ion binding, GO:0005737 - cytoplasm, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process		
9947	_	SIP15	_	SKIP interacting protein 15, SKIPa-interacting protein 15, SKIPa-interacting protein 15			12	EU368705. LOC_Os12g31790.		Os12g0502100	LOC_Os12g31790.1						
9948	_	SIP16	_	SKIP interacting protein 16, SKIPa-interacting protein 16, SKIPa-interacting protein 16			2	EU368706. LOC_Os02g58470.		Os02g0831400	LOC_Os02g58470.1						
9949	_	SIP17	_	SKIP interacting protein 17, SKIPa-interacting protein 17, SKIPa-interacting protein 17			12	EU368707. LOC_Os12g41910. Ubiquitin-ligase complex protein.	 Biochemical character	Os12g0613250 	LOC_Os12g41910.2, LOC_Os12g41910.1						
9955	_	SIP23	_	SKIP interacting protein 23, SKIPa-interacting protein 23, SKIPa-interacting protein 23			4	EU368713. LOC_Os04g33030.		Os04g0403200 	LOC_Os04g33030.2, LOC_Os04g33030.1				GO:0008270 - zinc ion binding		
9957	_	SIP25	_	SKIP interacting protein 25, SKIPa-interacting protein 25, SKIPa-interacting protein 25			5	EU368715. LOC_Os05g48620.	 Other	Os05g0559900 	LOC_Os05g48620.1				GO:0006355 - regulation of transcription, DNA-dependent		
9958	_	SIP26	_	SKIP interacting protein 26, SKIPa-interacting protein 26, SKIPa-interacting protein 26			2	EU368716. LOC_Os02g53520. AK121333.		Os02g0775400 	LOC_Os02g53520.1				GO:0005856 - cytoskeleton, GO:0007049 - cell cycle, GO:0005871 - kinesin complex, GO:0007018 - microtubule-based movement, GO:0016887 - ATPase activity, GO:0003777 - microtubule motor activity		
9959	_	SIP27	_	SKIP interacting protein 27, SKIPa-interacting protein 27, SKIPa-interacting protein 27			2	EU368717. LOC_Os02g28850.		Os02g0489800 	LOC_Os02g28850.1				GO:0007049 - cell cycle, GO:0008574 - plus-end-directed microtubule motor activity, GO:0005856 - cytoskeleton, GO:0005871 - kinesin complex, GO:0007018 - microtubule-based movement, GO:0005874 - microtubule, GO:0005524 - ATP binding		
9960	_	SIP28	_	SKIP interacting protein 28, SKIPa-interacting protein 28, SKIPa-interacting protein 28			10	EU368718. LOC_Os10g16440. Ubiquitin-ligase complex protein. GO:0001046: core promoter sequence-specific DNA binding. GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding.	 Other	Os10g0315400 	LOC_Os10g16440.2, LOC_Os10g16440.1				GO:0005634 - nucleus, GO:0006366 - transcription from RNA polymerase II promoter, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter		
9961	_	SIP29	_	SKIP interacting protein 29, SKIPa-interacting protein 29, SKIPa-interacting protein 29			4	EU368719. LOC_Os04g07830.		Os04g0160600 	LOC_Os04g07830.1						
9962	_	SIP30	_	SKIP interacting protein 30, SKIPa-interacting protein 30, SKIPa-interacting protein 30			7	EU368720. LOC_Os07g32450.		Os07g0508200 	LOC_Os07g32450.1				GO:0005856 - cytoskeleton, GO:0007049 - cell cycle, GO:0048573 - photoperiodism, flowering		
9963	_	SIP31	_	SKIP interacting protein 31, SKIPa-interacting protein 31, SKIPa-interacting protein 31			3	EU368721. LOC_Os03g46570. CT828890. Ubiquitin-ligase complex protein.		Os03g0668500 	LOC_Os03g46570.1						
9964	_	SIP32	_	SKIP interacting protein 32, SKIPa-interacting protein 32, SKIPa-interacting protein 32			3	EU368722. LOC_Os03g18300.		Os03g0294100 	LOC_Os03g18300.1				GO:0009941 - chloroplast envelope		
9965	_	SIP33	_	SKIP interacting protein 33, SKIPa-interacting protein 33, SKIPa-interacting protein 33			5	EU368723. LOC_Os05g14860. Ubiquitin-ligase complex protein. GO:0061630: ubiquitin protein ligase activity	 Biochemical character	Os05g0238200 	LOC_Os05g14860.1				GO:0005737 - cytoplasm, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0007275 - multicellular organismal development, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity, GO:0005634 - nucleus		
9966	_	SIP34	_	SKIP interacting protein 34, SKIPa-interacting protein 34, SKIPa-interacting protein 34			1	EU368724. LOC_Os01g02150. Extensin family protein.		Os01g0111900	LOC_Os01g02150.1						
9968	_	OsSGT, SGT, UGT74H3	_	salicylic acid glucosyltransferase, SA-glucosyltransferase, UDP-glucose-dependent glycosyltransferase 74H3			9	LOC_Os09g34250.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os09g0518200	LOC_Os09g34250.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0009611 - response to wounding, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process		
9969	_	OsMYB2, MYB2	_				3	a rice R2R3-type MYB gene.	 Tolerance and resistance - Stress tolerance	Os03g0315400	LOC_Os03g20090.1				GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
9970	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8	_	Myb transcription factor 4, myb transcription factor 8, transcription factor MYB8			4	a rice R2R3-type MYB gene. R2R3-MYB. Q7XBH4. Y11414. C72644. AY323484. OsMyb8 in Lee et al. 2000. a MAMP-Responsive MYB Transcription Factor.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0517100	LOC_Os04g43680.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0006351 - transcription, DNA-dependent, GO:0006950 - response to stress, GO:0003677 - DNA binding, GO:0002238 - response to molecule of fungal origin	TO:0000074 - blast disease, TO:0000675 - ferulic acid content, TO:0000255 - sheath blight disease resistance, TO:0000179 - biotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
9971	_	OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7	_	O. sativa R1R2R3 MYB-2, R1R2R3 MYB-2, Myb/SANT-LIKE 7			1	an R1R2R3 MYB gene. R2R3-MYB. BAD81765.	 Tolerance and resistance - Stress tolerance	Os01g0841500	LOC_Os01g62410.2, LOC_Os01g62410.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009609 - response to symbiotic bacterium	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
9972	_	OsMYBS3, MYBS3	_	transcription factor MYBS3			10	AAN63154. AY151044. a MYB-related protein. Q7XC57.	 Tolerance and resistance - Stress tolerance	Os10g0561400 	LOC_Os10g41200.1, LOC_Os10g41200.3, LOC_Os10g41200.2				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009744 - response to sucrose stimulus, GO:0009723 - response to ethylene stimulus, GO:0046872 - metal ion binding, GO:0009739 - response to gibberellin stimulus, GO:0003682 - chromatin binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
9973	_	OsMYB3R-1, OsMYB3R1, MYB3R1	_	O. sativa R1R2R3 MYB-1			12	AJ430051.		Os12g0238000 	LOC_Os12g13570.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
9974	CYCB1;4	OsCycB1;4, Orysa;CycB1;4, CYCB1-3, OsCYCB1-3	CYCLIN-B1-4	B-type cyclin 1;4	CYCLIN-B1-4		1	AY647458. Q0JNK6. CYCB1-3 in Zhao et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0281200	LOC_Os01g17402.2, LOC_Os01g17402.1				GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0019901 - protein kinase binding, GO:0051301 - cell division		
9975	_	OsMYBS1, MYBS1, Os-MYBS1, Mybs1	_	transcription factor MYBS1			1	LOC_Os01g34060. AY151042.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0524500	LOC_Os01g34060.1				GO:0009739 - response to gibberellin stimulus, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0003682 - chromatin binding, GO:0009743 - response to carbohydrate stimulus, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0003677 - DNA binding	TO:0000253 - seed dormancy, TO:0000074 - blast disease, TO:0000280 - seedling vigor, TO:0000168 - abiotic stress trait	
9976	_	OsMYBS2, MYBS2	_	transcription factor MYBS2				AY151043.							GO:0003677 - DNA binding		
9977	MDR7	MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11	MULTIDRUG RESISTANCE 7	multidrug resistance protein 4, ABC transporter superfamily ABCB subgroup member 5, P-Glycoprotein 5, Iron-sulfur cluster protein 28	MULTIDRUG RESISTANCE 7		1	LOC_Os01g50100. AJ535065. OsABCB11 in Wang et al. 2017.	 Tolerance and resistance - Stress tolerance	Os01g0695800	LOC_Os01g50100.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0006200 - ATP catabolic process, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	
9978	TPP3	OsTPP3	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 3		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 3		7	AP004341. Q7XI41.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0624600	LOC_Os07g43160.1				GO:0005992 - trehalose biosynthetic process		
9979	TPP4	OsTPP4, OsTPP7	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 4		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 4		2	LOC_Os02g51680. AP004119. Q6ZGP8. OsTPP7 in Ye et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0753000	LOC_Os02g51680.1				GO:0009413 - response to flooding, GO:0005992 - trehalose biosynthetic process	TO:0000114 - flooding related trait	
9980	TPP5	OsTPP5	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 5		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 5		4	AL606633. Q7XT34.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0554000	LOC_Os04g46760.1				GO:0003824 - catalytic activity, GO:0005992 - trehalose biosynthetic process		
9981	TPP6	OsTPP6	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 6		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 6		8	AP004658. Q6ZAL2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0409100	LOC_Os08g31630.2, LOC_Os08g31630.1				GO:0005992 - trehalose biosynthetic process		
9982	TPP7	OsTPP7	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 7	trehalose-6-phosphate phosphatase 7	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 7		9	LOC_Os09g20390. AP005580. Q6H5L4. KT384371. anaerobic germination tolerance. GO:0036293: response to decreased oxygen levels.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0369400	LOC_Os09g20390.3, LOC_Os09g20390.2, LOC_Os09g20390.1				GO:0003824 - catalytic activity, GO:0034059 - response to anoxia, GO:0005992 - trehalose biosynthetic process, GO:0009413 - response to flooding, GO:0005991 - trehalose metabolic process	TO:0000015 - oxygen sensitivity	
9983	TPP8	OsTPP8, OsTPP2	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 8		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 8		6	LOC_Os06g11840. AP004727. Q0DDI1. OsTPP2 in Ye et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0222100	LOC_Os06g11840.1				GO:0005992 - trehalose biosynthetic process, GO:0009413 - response to flooding, GO:0003824 - catalytic activity	TO:0000114 - flooding related trait	
9984	TPP9	OsTPP9	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 9		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 9		3	AC103551. Q10KF5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0386500	LOC_Os03g26910.1				GO:0005992 - trehalose biosynthetic process		
9985	LIP19	Lip19, lip19, OsbZIP38	LOW-TEMPERATURE-INDUCED PROTEIN 19	low-temperature-induced protein 19, bZIP transcription factor 38	LOW-TEMPERATURE-INDUCED PROTEIN 19		5	a bZIP-type DNAbinding protein. X57325. BP432981. HQ858806.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0129300	LOC_Os05g03865.1, LOC_Os05g03860.1				GO:0003700 - transcription factor activity, GO:0046983 - protein dimerization activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
9986	OBF1	OsOBF1, OsbZIP87	OCS-ELEMENT BINDING FACTOR 1	Oryza sativa OBF1, ocs-element Binding Factor 1, bZIP transcription factor 87	OCS-ELEMENT BINDING FACTOR 1		12	a LIP19-interacting protein. AB185280.	 Tolerance and resistance - Stress tolerance	Os12g0560900	LOC_Os12g37415.1, LOC_Os12g37410.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0046983 - protein dimerization activity		
9987	_	LIP5, lip5	_	low-temperature-induced protein 5	_			AB011368.	 Tolerance and resistance - Stress tolerance						GO:0009507 - chloroplast		
9988	_	LIP9, lip9	_	low-temperature-induced protein 9	_			AB011367.	 Tolerance and resistance - Stress tolerance								
9989	ZIP8	OsZIP8, OsZIP1	ZINC TRANSPORTER 8	zinc transporter 8, Zrt-Irt-like protein 8, Zinc-regulated transporter, Iron-regulated transporter-like protein 8	ZINC TRANSPORTER 8		7	LOC_Os07g12890. AB559523, AB559524, AB559525. A3BI11. AY327038. TO:0006049: iron concentration. TO:0006053: zinc concentration. OsZIP8 in Zhao et al. 2014. OsZIP1 in Chen et al. 2018. GO:0035864: response to potassium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0232800	LOC_Os07g12890.2, LOC_Os07g12890.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0051592 - response to calcium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0046686 - response to cadmium ion		
9990	BLS1	bls1	BACTERIAL LEAF STREAK RESISTANCE 1	Bacterial Leaf Streak Resistance 1			6	A bacterial leaf streak (BLS)resistance gene bls1, derived from the wild rice species Oryza rufipogon Griff(DP3), has been identified and primarily mapped on the short arm of chromosome 6. A BC2F2 population was constructed to map BLS-resistance gene. The segregation of the resistant and susceptible plants in BC2F2 in a ratio of 1 to 3, suggested that a recessive gene confers BLS resistance in DP3.In bulked segregant analysis (BSA), two SSR markers RM8116 and RM584 were identified to be polymorphic in resistant and susceptible DNA bulks. For further mapping the resistance gene, six polymorphic markers around the target region were applied to analyze the genotypes of the BC2F2 individuals. As a result, the BLS-resistant gene, designated as bls1, was mapped in a 4.0-cM region flanked by RM587 and RM510 on the short arm of chromosome 6.	 Tolerance and resistance - Disease resistance								
9991	PUT1	OsPUT1, PUT, OsLAT1	POLYAMINE UPTAKE TRANSPORTER 1	PA uptake transporter 1, polyamine uptake transporter 1, Polyamine Uptake Transporter1			2	Spermidine transporter. Tissue-specific expression  of PUT1 by semiquantitative RT-PCR showed that the gene was expressed in all tissues except seeds and roots. Q6Z8D0. GO:1902047: polyamine transmembrane transport. LOC_Os02g47210. GO:1900055: regulation of leaf senescence.	 Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - Heading date	Os02g0700500	LOC_Os02g47210.1				GO:0015846 - polyamine transport, GO:0016021 - integral to membrane, GO:0015606 - spermidine transmembrane transporter activity, GO:0015293 - symporter activity, GO:0015203 - polyamine transmembrane transporter activity, GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0015848 - spermidine transport, GO:0010150 - leaf senescence, GO:2000028 - regulation of photoperiodism, flowering	TO:0002616 - flowering time, TO:0000249 - leaf senescence	
9992	ARF8	OsARF8, OsARF12, ARF12	AUXIN RESPONSE FACTOR 8	auxin response factor-8, auxin response factor 8, auxin responsive factor 8, auxin response factor-12, auxin response factor 12	AUXIN RESPONSE FACTOR 8	osarf12, osarf12T, arf8-1	4	AB071298, Q0J951. TO:0020102: phosphate content. OsARF12 in Ni et al. 2014.	 Other	Os04g0671900	LOC_Os04g57610.3, LOC_Os04g57610.1				GO:0009734 - auxin mediated signaling pathway, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000401 - plant growth hormone sensitivity	
9993	ARF6B	OsARF6b, OsARF25, ARF25	AUXIN RESPONSE FACTOR 6B	auxin response factor-6B, auxin response factor 6B, auxin response factor-25, auxin response factor 25	AUXIN RESPONSE FACTOR 6B	osarf25	12	AB071295, Q2QM84. OsARF25 in Ni et al. 2014, Zhao et al. 2014, Zhang et al. 2019.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Other	Os12g0613700	LOC_Os12g41950.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009908 - flower development	TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000734 - grain length	
9994	MIR167D	miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p	MICRORNA167D	MICRORNA167d	_		7	OsARF12 was inhibited by osa-miRNA167d. miRBASE accession: MI0001109. LM383067, LM379321.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex	TO:0000429 - salt sensitivity, TO:0000074 - blast disease	
9995	_	OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3	_	auxin response factor-15, auxin response factor 15, OsETTIN1	_	ARF3bmut	5	a rice ortholog of Arabidopsis ETTIN. AB071290, Q8S985. ARF3b in Song et al. 2012. LOC_Os05g48870. OsARF3 and OsARF3-1 in Lu et al. 2018. miR390's target (Lu et al. 2018).	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os05g0563400	LOC_Os05g48870.9, LOC_Os05g48870.8, LOC_Os05g48870.7, LOC_Os05g48870.6, LOC_Os05g48870.5, LOC_Os05g48870.1				GO:0003677 - DNA binding, GO:0009629 - response to gravity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0006350 - transcription, GO:0005634 - nucleus	TO:0000492 - leaf shape, TO:0000370 - leaf width, TO:0002693 - gravity response trait, TO:0000614 - lemma shape	
9996	_	OsARF2, ARF2, OsETT2, ETT2, ARF3a	_	auxin response factor-2, auxin response factor 2, OsETTIN2	_	ARF3amut, ARF3amut-1, ARF3amut-2	1	a rice ortholog of Arabidopsis ETTIN. AB071291, Q0JKI9. ARF3a in Song et al. 2012. LOC_Os01g48060. TO:0000747: phyllome anatomy and morphology trait. TO:0006064: rolled leaf. TO:0000835: leaf sheath anatomy and morphology trait.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os01g0670800	LOC_Os01g48060.3, LOC_Os01g48060.2, LOC_Os01g48060.1				GO:0009629 - response to gravity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0002693 - gravity response trait, TO:0002718 - awn anatomy and morphology trait, TO:0000207 - plant height, TO:0000655 - leaf development trait	
9997	ARF2	OsARF2, OsARF4, ARF4	AUXIN RESPONSE FACTOR 2	auxin response factor-2, auxin response factor 2, auxin response factor-4, auxin response factor 4	AUXIN RESPONSE FACTOR 2	arf4-5, arf4-5a, arf4-5b, arf4-8	1	LOC_Os01g70270. AB071293, Q5JK20. OsARF4 in Hu et al. 2018, Sun et al. 2017. GEO DataSets: GSE98924.	 Seed - Morphological traits,  Character as QTL - Yield and productivity,  Other	Os01g0927600	LOC_Os01g70270.4, LOC_Os01g70270.3, LOC_Os01g70270.2, LOC_Os01g70270.1				GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048316 - seed development, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0005634 - nucleus	TO:0000653 - seed development trait, TO:0000590 - grain weight, TO:0000397 - grain size	PO:0001170 - seed development stage 
9998	_	OsMP, OsARF5, OsARF11	_	rice ortholog of Arabidopsis MONOPTEROS, auxin response factor-5, auxin response factor 5, auxin response factor-11, auxin response factor 11	AUXIN RESPONSE FACTOR 5		4	AB071292, Q8S983.	 Other	Os04g0664400	LOC_Os04g56850.2, LOC_Os04g56850.1				GO:0010305 - leaf vascular tissue pattern formation, GO:0009942 - longitudinal axis specification, GO:0009908 - flower development, GO:0003677 - DNA binding, GO:0009734 - auxin mediated signaling pathway, GO:0016020 - membrane, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048507 - meristem development, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0048364 - root development		
9999	ARF6A	OsARF6a, OsARF6, ARF6	AUXIN RESPONSE FACTOR 6A	auxin response factor-6a, auxin response factor 6a, auxin response factor-6, auxin response factor 6, auxin responsive factor 6	AUXIN RESPONSE FACTOR 6A		2	AB071294, Q6H6V4.	 Other	Os02g0164900	LOC_Os02g06910.1				GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0006350 - transcription		
10000	ARF7A	OsARF7a, OsARF19, ARF19, OsARF7	AUXIN RESPONSE FACTOR 7A	auxin response factor-7a, auxin response factor 7a, auxin response factor-19, auxin response factor 19	AUXIN RESPONSE FACTOR 7A	osarf19	6	AB071296, Q0D9R7. LOC_Os06g48950. OsARF19 in Zhang et al. 2014, Xu et al. 2018.  OsARF7and OsARF19 in Shafiq et al. 2017.	 Vegetative organ - Leaf,  Other	Os06g0702600	LOC_Os06g48950.1				GO:0009742 - brassinosteroid mediated signaling, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent	TO:0002672 - auxin content, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle	
10001	ARF7B	OsARF7b, OsARF21	AUXIN RESPONSE FACTOR 7B	auxin response factor-7b, auxin response factor 7b, auxin response factor-21, auxin response factor 21	AUXIN RESPONSE FACTOR 7B		8	AB071297, Q6YZW0. OsARF21 in Zhao et al. 2014.	 Other	Os08g0520500	LOC_Os08g40900.2, LOC_Os08g40900.1				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway		
10002	ARF10	OsARF10, OsARF18, ARF18	AUXIN RESPONSE FACTOR 10	auxin response factor-10, auxin response factor 10, auxin response factor-18, auxin response factor 18	AUXIN RESPONSE FACTOR 10		6	AB071299, Q653H7. LOC_Os06g47150. OsARF18 in Huang et al. 2016. TO:0006064: rolled leaf.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Other	Os06g0685700	LOC_Os06g47150.4, LOC_Os06g47150.3, LOC_Os06g47150.2, LOC_Os06g47150.1				GO:0003677 - DNA binding, GO:0009733 - response to auxin stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0006350 - transcription, GO:0009734 - auxin mediated signaling pathway, GO:0010481 - epidermal cell division, GO:0048316 - seed development, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity, TO:0000181 - seed weight, TO:0000149 - seed width, TO:0000653 - seed development trait, TO:0000622 - flower development trait, TO:0002655 - starch grain size, TO:0000696 - starch content, TO:0000135 - leaf length, TO:0000346 - tiller number, TO:0000655 - leaf development trait, TO:0000391 - seed size, TO:0000207 - plant height, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000180 - spikelet fertility	PO:0007615 - flower development stage , PO:0001170 - seed development stage 
10003	ARF16	OsARF16, OsARF2, OsARF1	AUXIN RESPONSE FACTOR 16	auxin response factor-16, auxin response factor 16, auxin response factor-2, auxin response factor 2, auxin response factor-1, auxin response factor 1	AUXIN RESPONSE FACTOR 16		1	AB071300, Q5NB85. OsARF2 in Waller et al. 2002.	 Other	Os01g0236300	LOC_Os01g13520.2, LOC_Os01g13520.1				GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway		
10004	ARF3	OsARF3, ETT3, Os ETT3, OsETT3	AUXIN RESPONSE FACTOR 3	auxin response factor-3, auxin response factor 3, OsETTIN3	AUXIN RESPONSE FACTOR 3		1	Q5JMM1. an ortholog of Arabidopsis ETT.	 Other	Os01g0753500	LOC_Os01g54990.1				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0003677 - DNA binding		
10005	ARF5	OsARF5	AUXIN RESPONSE FACTOR 5	auxin response factor-5, auxin response factor 5	AUXIN RESPONSE FACTOR 5		2	Q6Z2W3.	 Other	Os02g0141100	LOC_Os02g04810.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10006	ARF7	OsARF7	AUXIN RESPONSE FACTOR 7	auxin response factor-7, auxin response factor 7	AUXIN RESPONSE FACTOR 7		2	LOC_Os02g35140. Q6YVY0.	 Other	Os02g0557200	LOC_Os02g35140.1				GO:0010150 - leaf senescence, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009629 - response to gravity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway	TO:0002693 - gravity response trait	
10007	ARF8	OsARF8	AUXIN RESPONSE FACTOR 8	auxin response factor-8, auxin response factor 8	AUXIN RESPONSE FACTOR 8		2	Q6K223.	 Other	Os02g0628600	LOC_Os02g41800.2, LOC_Os02g41800.1				GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent		
10008	ARF9	OsARF9	AUXIN RESPONSE FACTOR 9	auxin response factor-9, auxin response factor 9	AUXIN RESPONSE FACTOR 9		4	LOC_Os04g36054. Q0JCZ4.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0442000	LOC_Os04g36054.1				GO:0009629 - response to gravity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0010150 - leaf senescence	TO:0002693 - gravity response trait	
10009	ARF10	OsARF10	AUXIN RESPONSE FACTOR 10	auxin response factor-10, auxin response factor 10	AUXIN RESPONSE FACTOR 10		4	Q7XKK6.	 Other	Os04g0519700	LOC_Os04g43910.1				GO:0006350 - transcription, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10010	ARF13	OsARF13, OsARF12	AUXIN RESPONSE FACTOR 13	auxin response factor-13, auxin response factor 13	AUXIN RESPONSE FACTOR 13		4	Q7XSS9. OsARF12 in Zhao et al. 2014.	 Other	Os04g0690600	LOC_Os04g59430.1				GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0003677 - DNA binding		
10011	ARF14	OsARF14, OsETT4, ETT4	AUXIN RESPONSE FACTOR 14	auxin response factor-14, auxin response factor 14, OsETTIN4	AUXIN RESPONSE FACTOR 14		5	Q0DGS1. a rice ortholog of Arabidopsis ETTIN.	 Other	Os05g0515400	LOC_Os05g43920.1				GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006350 - transcription		
10012	ARF16	OsARF16	AUXIN RESPONSE FACTOR 16	auxin response factor-16, auxin response factor 16	AUXIN RESPONSE FACTOR 16	osarf16	6	A3B9A0.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0196700	LOC_Os06g09660.1				GO:0010386 - lateral root primordium development, GO:0009638 - phototropism, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0009785 - blue light signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0048366 - leaf development		
10013	ARF17	OsARF17	AUXIN RESPONSE FACTOR 17	auxin response factor-17, auxin response factor 17	AUXIN RESPONSE FACTOR 17		6	Q653U3. TO: 0000829: leaf lamina morphology trait.	 Vegetative organ - Leaf,  Other	Os06g0677800	LOC_Os06g46410.2, LOC_Os06g46410.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0009908 - flower development	TO:0000163 - auxin sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000206 - leaf angle	
10014	ARF20	OsARF20	AUXIN RESPONSE FACTOR 20	auxin response factor-20, auxin response factor 20	AUXIN RESPONSE FACTOR 20		7	A3BH85.	 Other	Os07g0183100	LOC_Os07g08520.1				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway		
10015	ARF22	OsARF22	AUXIN RESPONSE FACTOR 22	auxin response factor-22, auxin response factor 22	AUXIN RESPONSE FACTOR 22		10	Q9AV47.	 Other	Os10g0479900	LOC_Os10g33940.1				GO:0009743 - response to carbohydrate stimulus, GO:0048829 - root cap development, GO:0048589 - developmental growth, GO:0048442 - sepal development, GO:0048441 - petal development, GO:0048366 - leaf development, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0010154 - fruit development, GO:0051301 - cell division, GO:0007389 - pattern specification process, GO:0009734 - auxin mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription		
10016	ARF24	OsARF24	AUXIN RESPONSE FACTOR 24	auxin response factor-24, auxin response factor 24	AUXIN RESPONSE FACTOR 24		12	Q2QQX6. LOC_Os12g29520. GO:0080181: lateral root branching.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Other	Os12g0479400	LOC_Os12g29520.1, LOC_Os12g29520.2, LOC_Os12g29520.5, LOC_Os12g29520.4, LOC_Os12g29520.3				GO:0009414 - response to water deprivation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0010150 - leaf senescence, GO:0010047 - fruit dehiscence, GO:0009911 - positive regulation of flower development, GO:0009734 - auxin mediated signaling pathway, GO:0010227 - floral organ abscission, GO:0048481 - ovule development, GO:0008285 - negative regulation of cell proliferation, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance	
10017	_	OsTSA, pOsTSA, TSbeta	_	putative OsTSA, alpha-subunit of tryptophan synthase, tryptophan synthase alpha chain	_		7	The properties of Os07g08430 are similar to ZmTSA. TSbeta in Nguyen et al. 2013.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0182100	LOC_Os07g08430.1				GO:0052544 - callose deposition in cell wall during defense response, GO:0000162 - tryptophan biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009411 - response to UV, GO:0009570 - chloroplast stroma, GO:0004834 - tryptophan synthase activity	TO:0000160 - UV light sensitivity	
10018	_	OsIGL, OsIgl	_	indole-3-glycerol phosphate lyase	_		3	The catalytic values of Os03g58300 are similar to those of ZmIGL and ZmBX1.		Os03g0797400	LOC_Os03g58300.1				GO:0042742 - defense response to bacterium, GO:0000162 - tryptophan biosynthetic process, GO:0004834 - tryptophan synthase activity, GO:0009570 - chloroplast stroma, GO:0052544 - callose deposition in cell wall during defense response		
10019	_		_	OsTSAlike	_		3			Os03g0797000	LOC_Os03g58260.2, LOC_Os03g58260.1				GO:0000162 - tryptophan biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009570 - chloroplast stroma, GO:0052544 - callose deposition in cell wall during defense response, GO:0004834 - tryptophan synthase activity		
10020	ASP1	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3	ABERRANT SPIKELET AND PANICLE 1	Lissencephaly type-1-like 1, ABERRANT SPIKELET AND PANICLE1, TOPLESS-RELATED PROTEIN 2, TOPLESS 3	_	oslis-l1-1, oslis-l1-2, asp1, asp1-1, asp1-2, asp1-3, asp1-4, asp1-5	8	ASP1 encodes a transcriptional co-repressor similar to Arabidopsis TOPLESS, and a loss-of-function mutant exhibited derepression of axillary bud growth as well as a disorganized panicle branching pattern, possibly due toa defect in meristem maintenance. LOC_Os08g06480.	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os08g0162100	LOC_Os08g06480.1				GO:0010229 - inflorescence development, GO:0003714 - transcription corepressor activity, GO:0010073 - meristem maintenance, GO:0010072 - primary shoot apical meristem specification	TO:0000050 - inflorescence branching, TO:0000152 - panicle number, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
10021	ALS1	OsALS1, OsABCB25, ABCB25	ALUMINUM SENSITIVE 1	ALUMINUM SENSITIVE 1, ABC transporter superfamily ABCB subgroup member 25	ABC TRANSPORTER B25	osals1, osals1-1, osals1-2, osals1-3	3	Q9FNU2. a half-size ABC transporter. GO:1904880: response to hydrogen sulfide.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0755100	LOC_Os03g54790.1				GO:0010044 - response to aluminum ion, GO:0015421 - oligopeptide-transporting ATPase activity, GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane, GO:0005524 - ATP binding, GO:0000325 - plant-type vacuole, GO:0005886 - plasma membrane		
10023	CYP20-2	OsCYP20-2, OsCYP-11	CYCLOPHILIN 20-2	cyclophilin 20-2, rice thylakoid lumenal cyclophilin OsCYP20-2, cyclophilin 11	CYCLOPHILIN 20-2		5	OsCYP-11 in Trivedi et al. 2013. D16053. LOC_Os05g01270.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0103200	LOC_Os05g01270.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0009543 - chloroplast thylakoid lumen, GO:0009535 - chloroplast thylakoid membrane, GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0010275 - NAD(P)H dehydrogenase complex assembly, GO:0009533 - chloroplast stromal thylakoid		
10024	_	OsFKBP12, FKBP12	_	FK506 binding protein 12	_		2	LOC_Os02g52290.	 Biochemical character	Os02g0760300	LOC_Os02g52290.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0016020 - membrane, GO:0006457 - protein folding, GO:0005528 - FK506 binding		
10025	_	OsFKBP13	_	FK506 binding protein 13	_		6		 Biochemical character	Os06g0663800	LOC_Os06g45340.3, LOC_Os06g45340.2, LOC_Os06g45340.1				GO:0009507 - chloroplast, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0031977 - thylakoid lumen		
10026	_	OsFKBP15-1	_	FK506 binding protein 15-1	_		9		 Biochemical character	Os09g0501850	LOC_Os09g32526.2, LOC_Os09g32526.1				GO:0005528 - FK506 binding, GO:0005773 - vacuole, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding		
10027	_	OsFKBP15-2	_	FK506 binding protein 15-2	_		1		 Biochemical character	Os01g0915800	LOC_Os01g68710.3, LOC_Os01g68710.2, LOC_Os01g68710.1				GO:0005773 - vacuole, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding		
10028	_	OsFKBP16-1	_	FK506 binding protein 16-1	_		2		 Biochemical character	Os02g0199300	LOC_Os02g10590.2, LOC_Os02g10590.1				GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0000412 - histone peptidyl-prolyl isomerization, GO:0005730 - nucleolus, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10029	_	OsFKBP16-2	_	FK506 binding protein 16-2	_		2		 Biochemical character	Os02g0751600	LOC_Os02g51570.1				GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0009543 - chloroplast thylakoid lumen		
10030	_	OsFKBP16-3	_	FK506 binding protein 16-3	_		8		 Biochemical character	Os08g0541400	LOC_Os08g42850.4, LOC_Os08g42850.3, LOC_Os08g42850.2, LOC_Os08g42850.1				GO:0016020 - membrane, GO:0006457 - protein folding, GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0009507 - chloroplast, GO:0031977 - thylakoid lumen		
10031	_	OsFKBP16-4	_	FK506 binding protein 16-4	_		7		 Biochemical character	Os07g0188266	LOC_Os07g09040.1						
10032	_	OsFKBP17-1	_	FK506 binding protein 17-1	_		2		 Biochemical character	Os02g0168700	LOC_Os02g07220.1				GO:0006457 - protein folding, GO:0016020 - membrane, GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10033	_	OsFKBP17-2	_	FK506 binding protein 17-2	_		3		 Biochemical character	Os03g0708500	LOC_Os03g50080.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0009535 - chloroplast thylakoid membrane		
10034	_	OsFKBP18	_	FK506 binding protein 18	_		2		 Biochemical character	Os02g0117600	LOC_Os02g02550.1				GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0031977 - thylakoid lumen, GO:0006457 - protein folding		
10035	_	OsFKBP19	_	FK506 binding protein 19	_		7		 Biochemical character	Os07g0133700	LOC_Os07g04160.2, LOC_Os07g04160.1				GO:0009535 - chloroplast thylakoid membrane, GO:0031977 - thylakoid lumen		
10036	_	OsFKBP20-1a, OsFKBP20	_	FK506 binding protein 20-1a, FK506-binding protein 20	_		5	AJ420710.	 Biochemical character	Os05g0458100	LOC_Os05g38370.3, LOC_Os05g38370.2, LOC_Os05g38370.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0016020 - membrane, GO:0006457 - protein folding		
10037	_	OsFKBP20-1b	_	FK506 binding protein 20-1b	_		1		 Biochemical character	Os01g0844300	LOC_Os01g62610.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0016020 - membrane, GO:0006457 - protein folding, GO:0005528 - FK506 binding		
10038	_	OsFKBP20-2, FKBP20-2	_	FK506 binding protein 20-2	_		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0490400	LOC_Os07g30800.1				GO:0009409 - response to cold, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0005528 - FK506 binding, GO:0016020 - membrane	TO:0000303 - cold tolerance	
10039	_	OsFKBP42a	_	FK506 binding protein 42a	_		12		 Biochemical character	Os12g0145500	LOC_Os12g05090.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0005886 - plasma membrane, GO:0048366 - leaf development, GO:0016020 - membrane		
10040	_	OsFKBP42b	_	FK506 binding protein 42b	_		11		 Biochemical character	Os11g0148300	LOC_Os11g05090.1				GO:0048366 - leaf development, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10041	_	OsFKBP44	_	FK506 binding protein 44	_		9		 Biochemical character	Os09g0103900	LOC_Os09g01670.1						
10042	_	OsFKBP46, FKBP46	_	FK506 binding protein 46	_		1	LOC_Os01g38359.	 Biochemical character	Os01g0564300	LOC_Os01g38359.2, LOC_Os01g38359.1				GO:0009723 - response to ethylene stimulus, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0016020 - membrane	TO:0000173 - ethylene sensitivity	
10043	_	OsFKBP53, OsFKBP53b	_	FK506 binding protein 53, FK506 binding protein 53b	_		9		 Biochemical character	Os09g0293900	LOC_Os09g12270.1				GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0016020 - membrane		
10044	_	OsFKBP57	_	FK506 binding protein 57	_		1		 Biochemical character	Os01g0562400	LOC_Os01g38180.1				GO:0016853 - isomerase activity, GO:0006457 - protein folding		
10045	_	OsFKBP58, OsFKBP53a, BIP122	_	FK506 binding protein 58, FK506 binding protein 53a, brassinosteroid receptor kinase (BRI1)-interacting protein 122, BRI1-interacting protein 122, brassinosteroid receptor kinase-interacting protein 122	_		4	AB118009.	 Biochemical character	Os04g0446500	LOC_Os04g36890.2, LOC_Os04g36890.1				GO:0006457 - protein folding, GO:0016020 - membrane, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0005730 - nucleolus, GO:0000412 - histone peptidyl-prolyl isomerization		
10046	_	OsFKBP59	_	FK506 binding protein 59	_		9		 Biochemical character	Os09g0103800	LOC_Os09g01650.1				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding		
10047	_	OsFKBP62a, OsFKBP64	_	FK506 binding protein 62a, FK506 binding protein 64	_		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0525600	LOC_Os08g41390.2, LOC_Os08g41390.1				GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0009408 - response to heat, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0005773 - vacuole	TO:0000259 - heat tolerance	
10048	_	OsFKBP62b, OsFKBP65	_	FK506 binding protein 62b, FK506 binding protein 65	_		4	AF140495.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0352400	LOC_Os04g28420.2, LOC_Os04g28420.1				GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005773 - vacuole, GO:0016020 - membrane, GO:0005528 - FK506 binding, GO:0006457 - protein folding	TO:0002657 - oxidative stress, TO:0000303 - cold tolerance	
10049	_	OsFKBP62c, OsFKBP75	_	FK506 binding protein 62c, FK506 binding protein 75	_		2		 Biochemical character	Os02g0491400	LOC_Os02g28980.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0005528 - FK506 binding, GO:0005773 - vacuole		
10050	_	OsFKBP72	_	FK506 binding protein 72	_		3		 Biochemical character	Os03g0367000	LOC_Os03g25140.1				GO:0009826 - unidimensional cell growth, GO:0009880 - embryonic pattern specification, GO:0030154 - cell differentiation, GO:0016020 - membrane, GO:0030010 - establishment of cell polarity, GO:0048527 - lateral root development, GO:0009735 - response to cytokinin stimulus, GO:0006457 - protein folding, GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0042761 - very-long-chain fatty acid biosynthetic process, GO:0005783 - endoplasmic reticulum		
10051	_	OsFKBP73	_	FK506 binding protein 73	_		1		 Biochemical character	Os01g0563000	LOC_Os01g38229.4, LOC_Os01g38229.3, LOC_Os01g38229.2, LOC_Os01g38229.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0016020 - membrane		
10052	_	OsTIG	_	trigger factor-like protein	_		6		 Biochemical character	Os06g0308000	LOC_Os06g20320.1				GO:0009570 - chloroplast stroma, GO:0015031 - protein transport, GO:0009941 - chloroplast envelope, GO:0006457 - protein folding		
10053	CYP17	OsCYP17, OsCYP-4	CYCLOPHILIN 17	cyclophilin 17, cyclophilin 4	CYCLOPHILIN 17		2	LOC_Os02g02090.	 Biochemical character	Os02g0111200	LOC_Os02g02090.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization		
10054	CYP18-1	OsCYP18-1, OsCYP-12	CYCLOPHILIN 18-1	cyclophilin 18-1, cyclophilin 12	CYCLOPHILIN 18-1		6	OsCYP-12 in Trivedi et al. 2013. LOC_Os06g04000.	 Biochemical character	Os06g0130500	LOC_Os06g04000.1				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10055	CYP18-2	OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12	CYCLOPHILIN 18-2	cyclophilin 18-2, cyclophilin 23, SKIP interacting protein 12, SKIPa-interacting protein 12, SKIPa-interacting protein 12	CYCLOPHILIN 18-2		8	OsCYP-23 in Trivedi et al. 2013. LOC_Os08g44520 (Os08g0559400/Os08g0559501).  a homologue of human peptidyl-prolyl isomerase-like 1 (PPiL1). EU368702.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0559400	LOC_Os08g44520.3, LOC_Os08g44520.2, LOC_Os08g44520.1				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005856 - cytoskeleton, GO:0007049 - cell cycle, GO:0005634 - nucleus, GO:0006457 - protein folding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
10056	CYP18-4	OsCYP18-4, OsCYP-26, OsCYP18-3	CYCLOPHILIN 18-4	cyclophilin 18-4, cyclophilin 26	CYCLOPHILIN 18-4		10	OsCYP-26 in Trivedi et al. 2013. OsCYP18-3 in Kumari et al. 2014. LOC_Os10g06630.	 Biochemical character	Os10g0154700	LOC_Os10g06630.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0009507 - chloroplast, GO:0006457 - protein folding, GO:0048046 - apoplast, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion		
10058	CYP19-3	OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b	CYCLOPHILIN 19-3	cyclophilin 19-3, cyclophilin 1, cyclophilin 25	CYCLOPHILIN 19-3		9	L29471. OsCYP-25 in Trivedi  et al. 2013. OsCYP19-2a and OsCYP19-2b in Kumari et al. 2014. LOC_Os09g39780.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0571400	LOC_Os09g39780.2, LOC_Os09g39780.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0046686 - response to cadmium ion, GO:0006457 - protein folding		
10059	CYP19-4	OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8	CYCLOPHILIN 19-4	cyclophilin 19-4, cyclophilin 16	CYCLOPHILIN 19-4		6	OsCYP-16 in Trivedi et al. 2013. OsCYP19-3 in Kumari et al. 2014. LOC_Os06g49470.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os06g0708400	LOC_Os06g49470.1				GO:0006457 - protein folding, GO:0005795 - Golgi stack, GO:0005783 - endoplasmic reticulum, GO:0005771 - multivesicular body, GO:0005829 - cytosol, GO:0009734 - auxin mediated signaling pathway, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0042542 - response to hydrogen peroxide, GO:0048046 - apoplast, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0048364 - root development, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast	TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000152 - panicle number, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000590 - grain weight, TO:0000396 - grain yield, TO:0000303 - cold tolerance	
10060	CYP20-1	OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b	CYCLOPHILIN 20-1	cyclophilin 20-1, cyclophilin 17	CYCLOPHILIN 20-1		6	OsCYP-17 in Trivedi et al. 2013. LOC_Os06g49480.	 Biochemical character	Os06g0708500	LOC_Os06g49480.2, LOC_Os06g49480.1				GO:0005829 - cytosol, GO:0005771 - multivesicular body, GO:0009507 - chloroplast, GO:0048364 - root development, GO:0006457 - protein folding, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0005795 - Golgi stack, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10061	CYP20-3	OsCYP20-3, OsCYP-5	CYCLOPHILIN 20-3	cyclophilin 20-3, cyclophilin 5	CYCLOPHILIN 20-3		1	OsCYP-5 in Trivedi et al. 2013. LOC_Os01g18210.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0284700	LOC_Os01g18210.1				GO:0009628 - response to abiotic stimulus, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0022626 - cytosolic ribosome, GO:0019344 - cysteine biosynthetic process, GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0031977 - thylakoid lumen, GO:0009535 - chloroplast thylakoid membrane, GO:0042742 - defense response to bacterium, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0009737 - response to abscisic acid stimulus, GO:0009642 - response to light intensity, GO:0048046 - apoplast, GO:0010555 - response to mannitol stimulus, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma	TO:0000315 - bacterial disease resistance, TO:0000168 - abiotic stress trait	
10062	CYP21-1	OsCYP21-1, OsCYP-24	CYCLOPHILIN 21-1	cyclophilin 21-1, cyclophilin 24	CYCLOPHILIN 21-1		9	OsCYP-24 in Trivedi et al. 2013. LOC_Os09g36670.	 Biochemical character	Os09g0537600	LOC_Os09g36670.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0005794 - Golgi apparatus, GO:0000413 - protein peptidyl-prolyl isomerization		
10063	CYP21-4	OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c	CYCLOPHILIN 21-4	cyclophilin 21-4, cyclophilin 19	CYCLOPHILIN 21-4		7	OsCYP-19 in Trivedi et al. 2013. OsCYP21-2a, OsCYP21-2b and OsCYP21-2c in Kumari et al. 2014. LOC_Os07g29390.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os07g0476500	LOC_Os07g29390.3, LOC_Os07g29390.2, LOC_Os07g29390.1				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005794 - Golgi apparatus, GO:0006457 - protein folding, GO:0005886 - plasma membrane, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000143 - relative biomass, TO:0000371 - yield trait, TO:0000181 - seed weight	
10064	CYP22	OsCYP22, OsCYP-10	CYCLOPHILIN 22	cyclophilin 22, cyclophilin 10	CYCLOPHILIN 22		3	OsCYP-10 in Trivedi et al. 2013. LOC_Os03g59700.	 Biochemical character	Os03g0811600	LOC_Os03g59700.1				GO:0006457 - protein folding, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization		
10065	CYP23	OsCYP23, OsCYP-28, OsCYP23a, OsCYP23b, OsCYP23c	CYCLOPHILIN 23	cyclophilin 23, cyclophilin 28	CYCLOPHILIN 23		11	OsCYP-28 in Trivedi et al. 2013. LOC_Os11g38990.	 Biochemical character	Os11g0602900	LOC_Os11g38990.3, LOC_Os11g38990.2, LOC_Os11g38990.1				GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10066	CYP26-2	OsCYP26-2, OsCYP-1, OsCYP26-1	CYCLOPHILIN 26-2	cyclophilin 26-2, cyclophilin 1	CYCLOPHILIN 26-2		1	OsCYP-1 in Trivedi et al. 2013. OsCYP26-1 in Kumari et al. 2014. LOC_Os01g02080.	 Biochemical character	Os01g0111100	LOC_Os01g02080.1				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0009507 - chloroplast, GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10067	CYP28	OsCYP28, OsCYP-21, OsCYP28a, OsCYP28b, OsCYP28c, OsCYP28d	CYCLOPHILIN 28	cyclophilin 28, cyclophilin 21	CYCLOPHILIN 28		8	OsCYP-21 in Trivedi et al. 2013. LOC_Os08g19610.	 Biochemical character	Os08g0292600	LOC_Os08g19610.4, LOC_Os08g19610.3, LOC_Os08g19610.2, LOC_Os08g19610.1				GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0009507 - chloroplast, GO:0031977 - thylakoid lumen		
10068	CYP37	OsCYP37, OsCYP37a, OsCYP37b	CYCLOPHILIN 37	cyclophilin 37	CYCLOPHILIN 37		7	LOC_Os07g37830.	 Biochemical character	Os07g0565600	LOC_Os07g37830.2, LOC_Os07g37830.1				GO:0006457 - protein folding, GO:0031977 - thylakoid lumen, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0009535 - chloroplast thylakoid membrane		
10069	CYP38	OsCYP38, OsCYP38a, OsCYP38b	CYCLOPHILIN 38	cyclophilin 38	CYCLOPHILIN 38		8	LOC_Os08g29370.	 Biochemical character	Os08g0382400	LOC_Os08g29370.2, LOC_Os08g29370.1				GO:0031977 - thylakoid lumen, GO:0009535 - chloroplast thylakoid membrane, GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0042742 - defense response to bacterium, GO:0009570 - chloroplast stroma		
10070	CYP40A	OsCYP40a, OsCYP-13, OsCYP40-1a, OsCYP40-1b	CYCLOPHILIN 40A	cyclophilin 40a, cyclophilin 13	CYCLOPHILIN 40A		6	OsCYP-13 in Trivedi et al. 2013. OsCYP40-1a and OsCYP40-1b in Kumari et al. 2014. LOC_Os06g11320.	 Biochemical character	Os06g0216800	LOC_Os06g11320.2, LOC_Os06g11320.1				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0010582 - floral meristem determinacy, GO:0010050 - vegetative phase change, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005737 - cytoplasm, GO:0006457 - protein folding		
10071	CYP40B	OsCYP40b, OsCYP-8, OsCYP40-2	CYCLOPHILIN 40B	cyclophilin 40b, cyclophilin 8	CYCLOPHILIN 40B		2	OsCYP-8 in Trivedi et al. 2013. OsCYP40-2 in Kumari et al. 2014. LOC_Os02g52360.	 Biochemical character	Os02g0761100	LOC_Os02g52360.1				GO:0010050 - vegetative phase change, GO:0010582 - floral meristem determinacy, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005737 - cytoplasm, GO:0006457 - protein folding		
10072	CYP57	OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b	CYCLOPHILIN 57	cyclophilin 57, cyclophilin 3	CYCLOPHILIN 57		1	OsCYP-3 in Trivedi et al. 2013. LOC_Os01g40050.	 Biochemical character	Os01g0582400	LOC_Os01g40050.2, LOC_Os01g40050.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0006457 - protein folding		
10073	CYP59A	OsCYP59a, OsCYP-14, OsCYP59-1	CYCLOPHILIN 59A	cyclophilin 59a, cyclophilin 14	CYCLOPHILIN 59A		6	OsCYP-14 in Trivedi et al. 2013. OsCYP59-1 in Kumari et al. 2014. LOC_Os06g45900.	 Biochemical character	Os06g0670400	LOC_Os06g45900.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus		
10074	CYP59B	OsCYP59b, OsCYP-15, OsCYP59-2	CYCLOPHILIN 59B	cyclophilin 59b, cyclophilin 15	CYCLOPHILIN 59B		6	OsCYP-15 in Trivedi et al. 2013. OsCYP59-2 in Kumari et al. 2014. LOC_Os06g45910.	 Biochemical character	Os06g0670500	LOC_Os06g45910.1				GO:0000166 - nucleotide binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0008270 - zinc ion binding, GO:0006457 - protein folding		
10075	CYP63	OsCYP63, OsCYP-18	CYCLOPHILIN 63	cyclophilin 63, cyclophilin 18	CYCLOPHILIN 63		7	OsCYP-18 in Trivedi et al. 2013. LOC_Os07g08190.	 Biochemical character	Os07g0179200	LOC_Os07g08190.1						
10076	CYP65	OsCYP65, OsCYP-9	CYCLOPHILIN 65	cyclophilin 65, cyclophilin 9	CYCLOPHILIN 65		3	OsCYP-9 in Trivedi et al. 2013. LOC_Os03g10400.	 Biochemical character	Os03g0201100	LOC_Os03g10400.2				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10077	CYP71	OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b	CYCLOPHILIN 71	cyclophilin 71, cyclophilin 22	CYCLOPHILIN 71		8	OsCYP-22 in Trivedi et al. 2013. LOC_Os08g44330.	 Biochemical character	Os08g0557500	LOC_Os08g44330.2, LOC_Os08g44330.1				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0009933 - meristem structural organization, GO:0010305 - leaf vascular tissue pattern formation, GO:0010338 - leaf formation, GO:0010082 - regulation of root meristem growth, GO:0031060 - regulation of histone methylation, GO:0048443 - stamen development, GO:0048453 - sepal formation, GO:0048440 - carpel development, GO:0010358 - leaf shaping, GO:0009909 - regulation of flower development, GO:0005634 - nucleus, GO:0003682 - chromatin binding		
10078	CYP95	OsCYP95, OsCYP-6, OsCYP95a, OsCYP95b	CYCLOPHILIN 95	cyclophilin 95, cyclophilin 6	CYCLOPHILIN 95		2	LOC_Os02g10970. OsCYP-6 in Trivedi et al. 2013.	 Biochemical character	Os02g0204300/Os02g0204201							
10079	BZIP39	OsbZIP39, bZIP39	b-ZIP TRANSCRIPTION FACTOR 39	b-ZIP transcription factor 39, basic leucine zipper transcription factor 39	b-ZIP TRANSCRIPTION FACTOR 39		5		 Tolerance and resistance - Stress tolerance,  Other	Os05g0411300	LOC_Os05g34050.1				GO:0006986 - response to unfolded protein		
10080	BZIP60	OsbZIP60, bZIP60	b-ZIP TRANSCRIPTION FACTOR 60	b-ZIP transcription factor 60	b-ZIP TRANSCRIPTION FACTOR 60		7	LOC_Os07g44950. bZIP60 is an ER stress sensor in rice, and a counterpart of mammalian ATF6.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0644100	LOC_Os07g44950.1				GO:0009408 - response to heat, GO:0006986 - response to unfolded protein, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000432 - temperature response trait	
10081	IRE1	IRE1, OsIRE1, OsIre1	INOSITOL REQUIRING 1	endoplasmic reticulum (ER) stress sensor IRE1	_		7	rice homolog of yeast Ire1p. AB031396.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0471000	LOC_Os07g28820.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters, GO:0006397 - mRNA processing, GO:0005524 - ATP binding, GO:0006986 - response to unfolded protein		
10082	_	OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2	_	ER chaperone BiP1, Binding protein 1, binding protein, endosperm lumenal binding protein, endoplasmic reticulum (ER) chaperone BiP3, Polypeptide chain-binding protein, Mediator 37_2	_		2	AF006825. D21113. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0115900	LOC_Os02g02410.1				GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0009408 - response to heat, GO:0034976 - response to endoplasmic reticulum stress, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0005788 - endoplasmic reticulum lumen, GO:0006458 - 'de novo' protein folding, GO:0006986 - response to unfolded protein, GO:0034975 - protein folding in endoplasmic reticulum, GO:0010197 - polar nucleus fusion, GO:0046686 - response to cadmium ion		
10083	_	OsBiP2, Bip2	_	ER chaperone BiP2, Binding protein 2	_		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0710500	LOC_Os03g50250.1				GO:0005524 - ATP binding		
10084	_	OsBiP3, BiP3	_	ER chaperone BiP3, Binding protein 3	_		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0367800	LOC_Os05g30480.1				GO:0010197 - polar nucleus fusion, GO:0030433 - ER-associated protein catabolic process, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0005618 - cell wall, GO:0009408 - response to heat, GO:0005524 - ATP binding		
10085	_	OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2	_	ER chaperone BiP4, Binding protein 4, Mediator 37_5	_		5	LOC_Os05g35400. BiP2 in Zhang et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0428600	LOC_Os05g35400.1				GO:0030433 - ER-associated protein catabolic process, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0010197 - polar nucleus fusion, GO:0009507 - chloroplast, GO:0009408 - response to heat, GO:0005886 - plasma membrane, GO:0005773 - vacuole		
10086	_	OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7	_	ER chaperone BiP5, Binding protein 5, Mediator 37_7	_		8	LOC_Os08g09770.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0197700	LOC_Os08g09770.1				GO:0034976 - response to endoplasmic reticulum stress, GO:0005524 - ATP binding		
10087	_	OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d	_	"SAR1B-like gene, secretion-associated Ras-superfamily protein 1, ARF-like protein 1c, \"secretion-associated, Ras-related protein1d\""	_		6	LOC_Os06g12090.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0225000	LOC_Os06g12090.1				GO:0005886 - plasma membrane, GO:0006886 - intracellular protein transport, GO:0009507 - chloroplast, GO:0005783 - endoplasmic reticulum, GO:0009269 - response to desiccation, GO:0009737 - response to abscisic acid stimulus, GO:0016192 - vesicle-mediated transport, GO:0005525 - GTP binding, GO:0005794 - Golgi apparatus, GO:0005829 - cytosol	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
10088	CNX	OsCNX, OsCNX1, CNX1	CALNEXIN	Calnexin	CALNEXIN		4	GQ121138.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0402100	LOC_Os04g32950.4, LOC_Os04g32950.3, LOC_Os04g32950.2, LOC_Os04g32950.1				GO:0006457 - protein folding, GO:0009505 - plant-type cell wall, GO:0009507 - chloroplast, GO:0005509 - calcium ion binding, GO:0005739 - mitochondrion, GO:0005773 - vacuole, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0034976 - response to endoplasmic reticulum stress	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
10089	_	OsDjB6, OsERdj3B	_	ERdj3B-like gene, ERDJ3 like, ERDJ3 like gene, DnaJ domain protein B6, ER-resident J-protein 3B	_		5	cell death marker. a co-chaperone component of the HSP70 system.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0156500	LOC_Os05g06440.1				GO:0005788 - endoplasmic reticulum lumen, GO:0006457 - protein folding, GO:0034976 - response to endoplasmic reticulum stress, GO:0005886 - plasma membrane		
10090	_		_	SDF2-like gene	_		8		 Tolerance and resistance - Stress tolerance	Os08g0278900	LOC_Os08g17680.1				GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus		
10091	_	NEF	_	Fes1-like gene	_		9	CB654132. co-chaperone.	 Biochemical character	Os09g0512700	LOC_Os09g33780.1				GO:0005488 - binding		
10092	BZIP1	OsbZIP01, OsbZIP1	b-ZIP TRANSCRIPTION FACTOR 1	b-ZIP transcription factor 01	b-ZIP TRANSCRIPTION FACTOR 1		1	LOC_Os01g07880. AtHY5 homolog in rice.	 Other	Os01g0174000	LOC_Os01g07880.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10093	BZIP2	OsbZIP02, OsbZIP2, OsSTA8	b-ZIP TRANSCRIPTION FACTOR 2	b-ZIP transcription factor 02	b-ZIP TRANSCRIPTION FACTOR 2		1	LOC_Os01g11350. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Other	Os01g0211800	LOC_Os01g11350.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		PO:0009066 - anther 
10094	BZIP3	OsbZIP03, OsbZIP3, OsHBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3	b-ZIP TRANSCRIPTION FACTOR 3	b-ZIP transcription factor 03, histone-gene binding protein 1b, TGA transcription factor 5	b-ZIP TRANSCRIPTION FACTOR 3		1	KM096571. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0279900	LOC_Os01g17260.2, LOC_Os01g17260.1				GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0016209 - antioxidant activity	TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000112 - disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000495 - chlorophyll content	
10095	BZIP4	OsbZIP04, OsbZIP4	b-ZIP TRANSCRIPTION FACTOR 4	b-ZIP transcription factor 04	b-ZIP TRANSCRIPTION FACTOR 4		1		 Tolerance and resistance - Stress tolerance,  Other	Os01g0542700	LOC_Os01g36220.1				GO:0003700 - transcription factor activity, GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding	TO:0000432 - temperature response trait	
10096	BZIP6	OsbZIP06, OsbZIP6	b-ZIP TRANSCRIPTION FACTOR 6	b-ZIP transcription factor 06	b-ZIP TRANSCRIPTION FACTOR 6		1		 Other	Os01g0756200	LOC_Os01g55150.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10097	BZIP7	OsbZIP07, OsbZIP7	b-ZIP TRANSCRIPTION FACTOR 7	b-ZIP transcription factor 07	b-ZIP TRANSCRIPTION FACTOR 7		1	LOC_Os01g58760. XB21 interacting protein (XB21IP).	 Other	Os01g0801901	LOC_Os01g58760.1				GO:0003700 - transcription factor activity		
10098	BZIP8	OsbZIP08, OsbZIP8, OsTGA2, TGA2, OsTGA2/OsbZIP28	b-ZIP TRANSCRIPTION FACTOR 8	b-ZIP transcription factor 08, TGA transcription factor 2	b-ZIP TRANSCRIPTION FACTOR 8		1	OsTGA2/OsbZIP28 in Moon et al. 2018.	 Tolerance and resistance - Disease resistance,  Other	Os01g0808100	LOC_Os01g59350.2, LOC_Os01g59350.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
10099	BZIP9	OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2	b-ZIP TRANSCRIPTION FACTOR 9	b-ZIP transcription factor 09, Hd3a BINDING REPRESSOR FACTOR2, Hd3a BINDING REPRESSOR FACTOR 2	b-ZIP TRANSCRIPTION FACTOR 9	hbf2	1	LOC_Os01g59760. a floral repressor.	 Reproductive organ - Heading date,  Other	Os01g0813100	LOC_Os01g59760.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:2000028 - regulation of photoperiodism, flowering	TO:0002616 - flowering time, TO:0000137 - days to heading	
10101	BZIP12	OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2	b-ZIP TRANSCRIPTION FACTOR 12	b-ZIP transcription factor 12, ABA responsive element binding factor 1, ORGAN SPECIFIC ELEMENT 2	b-ZIP TRANSCRIPTION FACTOR 12	Osabf1-1, Osabf1-2	1	LOC_Os01g64730. GQ904238.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0867300	LOC_Os01g64730.1, LOC_Os01g64730.2				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat	TO:0000432 - temperature response trait, TO:0000615 - abscisic acid sensitivity	
10102	BZIP13	OsbZIP13	b-ZIP TRANSCRIPTION FACTOR 13	b-ZIP transcription factor 13	b-ZIP TRANSCRIPTION FACTOR 13		2		 Other	Os02g0128200	LOC_Os02g03580.3, LOC_Os02g03580.2, LOC_Os02g03580.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
10103	BZIP14	OsbZIP14	b-ZIP TRANSCRIPTION FACTOR 14	b-ZIP transcription factor 14	b-ZIP TRANSCRIPTION FACTOR 14		2		 Other	Os02g0132500	LOC_Os02g03960.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10104	RISBZ4	OsbZIP15	RICE SEED B-ZIPPER 4	b-ZIP transcription factor 15, rice seed b-Zipper 4	RICE SEED B-ZIPPER 4		2	AB053473.	 Other	Os02g0175100	LOC_Os02g07840.2, LOC_Os02g07840.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10105	BZIP16	OsbZIP16, OsSTA51	b-ZIP TRANSCRIPTION FACTOR 16	b-ZIP transcription factor 16, Basic leucine zipper transcription factor OsbZIP16	b-ZIP TRANSCRIPTION FACTOR 16		2	LOC_Os02g09830. CT835362. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os02g0191600	LOC_Os02g09830.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		PO:0009066 - anther 
10106	BZIP17	OsbZIP17	b-ZIP TRANSCRIPTION FACTOR 17	b-ZIP transcription factor 17	b-ZIP TRANSCRIPTION FACTOR 17		2		 Other	Os02g0194900	LOC_Os02g10150.1, LOC_Os02g10140.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10107	BZIP18	OsbZIP18	b-ZIP TRANSCRIPTION FACTOR 18	b-ZIP transcription factor 18	b-ZIP TRANSCRIPTION FACTOR 18		2	AtHY5 homolog in rice. LOC_Os02g10860 (Os02g0203000/Os02g0202950).	 Other	Os02g0203000	LOC_Os02g10860.1				GO:0030246 - carbohydrate binding, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10108	BZIP19	OsbZIP19	b-ZIP TRANSCRIPTION FACTOR 19	b-ZIP transcription factor 19	b-ZIP TRANSCRIPTION FACTOR 19		2		 Other	Os02g0247100	LOC_Os02g14910.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10109	RITA1	OsbZIP20, RITA-1, RISBZ3	RICE TRANSCRIPTION ACTIVATOR 1	b-ZIP transcription factor 20, rice seed b-Zipper 3, rice transcription activator-1	RICE TRANSCRIPTION ACTIVATOR 1		2	L34551.	 Other	Os02g0266800	LOC_Os02g16680.2, LOC_Os02g16680.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10110	BZIP21	OsbZIP21	b-ZIP TRANSCRIPTION FACTOR 21	b-ZIP transcription factor 21	b-ZIP TRANSCRIPTION FACTOR 21		2		 Other	Os02g0538900	LOC_Os02g33560.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10111	BZIP22	OsbZIP22	b-ZIP TRANSCRIPTION FACTOR 22	b-ZIP transcription factor 22	b-ZIP TRANSCRIPTION FACTOR 22		2		 Other	Os02g0728001	LOC_Os02g49560.1						
10112	BZIP24	OsbZIP24, OsFD3, FD3	b-ZIP TRANSCRIPTION FACTOR 24	bZIP transcription factor 24, FD Transcription Factor 3	b-ZIP TRANSCRIPTION FACTOR 24		2		 Tolerance and resistance - Stress tolerance,  Other	Os02g0833600	LOC_Os02g58670.2, LOC_Os02g58670.1				GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000432 - temperature response trait	
10113	BZIP25	OsbZIP25	b-ZIP TRANSCRIPTION FACTOR 25	bZIP transcription factor 25	b-ZIP TRANSCRIPTION FACTOR 25		3		 Other	Os03g0127500	LOC_Os03g03550.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10114	BZIP26	OsbZIP26	b-ZIP TRANSCRIPTION FACTOR 26	bZIP transcription factor 26	b-ZIP TRANSCRIPTION FACTOR 26		3		 Other	Os03g0239400	LOC_Os03g13614.3, LOC_Os03g13614.2, LOC_Os03g13614.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10115	BZIP27	OsbZIP27	b-ZIP TRANSCRIPTION FACTOR 27	bZIP transcription factor 27	b-ZIP TRANSCRIPTION FACTOR 27		3		 Other	Os03g0306700	LOC_Os03g19375.1, LOC_Os03g19370.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10116	BZIP28	OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08	b-ZIP TRANSCRIPTION FACTOR 28	bZIP transcription factor 28, bZIP transcription factor 1	b-ZIP TRANSCRIPTION FACTOR 28		3	AY620414. OsTGA3/OsbZIP08 in Moon et al. 2018.	 Tolerance and resistance - Disease resistance,  Other	Os03g0318600	LOC_Os03g20310.4, LOC_Os03g20310.3, LOC_Os03g20310.2, LOC_Os03g20310.1				GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0009410 - response to xenobiotic stimulus, GO:0009627 - systemic acquired resistance, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005737 - cytoplasm, GO:0006351 - transcription, DNA-dependent	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000112 - disease resistance	
10117	BZIP29	OsbZIP29	b-ZIP TRANSCRIPTION FACTOR 29	bZIP transcription factor 29	b-ZIP TRANSCRIPTION FACTOR 29		3		 Other	Os03g0322700	LOC_Os03g20650.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10118	BZIP31	OsbZIP31	b-ZIP TRANSCRIPTION FACTOR 31	b-ZIP transcription factor 31	b-ZIP TRANSCRIPTION FACTOR 31		3		 Other	Os03g0675400	LOC_Os03g47200.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10119	BZIP32	OsbZIP32	b-ZIP TRANSCRIPTION FACTOR 32	b-ZIP transcription factor 32	b-ZIP TRANSCRIPTION FACTOR 32		3		 Other	Os03g0770000	LOC_Os03g56010.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10121	BZIP34	OsbZIP34	b-ZIP TRANSCRIPTION FACTOR 34	b-ZIP transcription factor 34	b-ZIP TRANSCRIPTION FACTOR 34		3		 Reproductive organ,  Other	Os03g0809200	LOC_Os03g59460.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		PO:0000084 - plant sperm cell 
10122	BZIP35	OsbZIP35	b-ZIP TRANSCRIPTION FACTOR 35	b-ZIP transcription factor 35	b-ZIP TRANSCRIPTION FACTOR 35		4		 Other	Os04g0181300	LOC_Os04g10260.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10123	BZIP36	OsbZIP36	b-ZIP TRANSCRIPTION FACTOR 36	b-ZIP transcription factor 36	b-ZIP TRANSCRIPTION FACTOR 36		4		 Other	Os04g0495500	LOC_Os04g41820.1						
10124	BZIP37	OsTGAP1, TGAP1, OsbZIP37	b-ZIP TRANSCRIPTION FACTOR 37	TGA factor for phytoalexin production 1, bZIP transcription factor 37	b-ZIP TRANSCRIPTION FACTOR 37	ostgap1	4		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os04g0637000	LOC_Os04g54474.3, LOC_Os04g54474.2, LOC_Os04g54474.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0046983 - protein dimerization activity, GO:0009689 - induction of phytoalexin biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016102 - diterpenoid biosynthetic process, GO:0052315 - phytoalexin biosynthetic process, GO:0010322 - regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	TO:0002669 - diterpenoid phytoalexin content, TO:0000172 - jasmonic acid sensitivity, TO:0000674 - phytochemical compound content, TO:0000624 - allelopathic effect	
10125	BZIP40	OsbZIP40	b-ZIP TRANSCRIPTION FACTOR 40	b-ZIP transcription factor 40	b-ZIP TRANSCRIPTION FACTOR 40		5		 Other	Os05g0437700	LOC_Os05g36160.2, LOC_Os05g36160.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10126	BZIP41	OsbZIP41, TGA1	b-ZIP TRANSCRIPTION FACTOR 41	b-ZIP transcription factor 41, TGA transcription factor 1	b-ZIP TRANSCRIPTION FACTOR 41		5	LOC_Os05g37170.	 Other	Os05g0443900	LOC_Os05g37170.8, LOC_Os05g37170.6, LOC_Os05g37170.5, LOC_Os05g37170.4, LOC_Os05g37170.3, LOC_Os05g37170.2, LOC_Os05g37170.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10127	BZIP42	OsbZIP42, OsABF7, ABF7, HBF1	b-ZIP TRANSCRIPTION FACTOR 42	b-ZIP transcription factor 42, Hd3a BINDING REPRESSOR FACTOR1, Hd3a BINDING REPRESSOR FACTOR 1	b-ZIP TRANSCRIPTION FACTOR 42	hbf1, hbf1-1	5	HQ858813. a floral repressor.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os05g0489700	LOC_Os05g41070.1				GO:0009414 - response to water deprivation, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:2000028 - regulation of photoperiodism, flowering	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002616 - flowering time, TO:0000137 - days to heading	
10128	BZIP43	OsbZIP43	b-ZIP TRANSCRIPTION FACTOR 43	b-ZIP transcription factor 43	b-ZIP TRANSCRIPTION FACTOR 43		5		 Other	Os05g0492000	LOC_Os05g41280.1						
10129	BZIP44	OsbZIP44	b-ZIP TRANSCRIPTION FACTOR 44	b-ZIP transcription factor 44	b-ZIP TRANSCRIPTION FACTOR 44		5		 Other	Os05g0495200	LOC_Os05g41540.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10130	BZIP45	OsbZIP45	b-ZIP TRANSCRIPTION FACTOR 45	b-ZIP transcription factor 45	b-ZIP TRANSCRIPTION FACTOR 45		5		 Other	Os05g0569300	LOC_Os05g49420.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
10131	BZIP47	OsbZIP47	b-ZIP TRANSCRIPTION FACTOR 47	b-ZIP transcription factor 47	b-ZIP TRANSCRIPTION FACTOR 47		6		 Other	Os06g0265400	LOC_Os06g15480.2, LOC_Os06g15480.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009909 - regulation of flower development		
10132	BZIP48	OsbZIP48, OsHY5, HY5	b-ZIP TRANSCRIPTION FACTOR 48	b-ZIP transcription factor 48, ELONGATED HYPOCOTYL 5	b-ZIP TRANSCRIPTION FACTOR 48		6	an Arabidopsis HY5 (AtHY5) transcription factor ortholog.	 Vegetative organ - Culm,  Coloration - Anthocyanin,  Seed - Morphological traits,  Other	Os06g0601500	LOC_Os06g39960.1				GO:0032502 - developmental process, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0031542 - positive regulation of anthocyanin biosynthetic process, GO:0003700 - transcription factor activity	TO:0000486 - seed color, TO:0000207 - plant height, TO:0000071 - anthocyanin content	PO:0007632 - seed maturation stage 
10133	BZIP49	OsbZIP49	b-ZIP TRANSCRIPTION FACTOR 49	b-ZIP transcription factor 49	b-ZIP TRANSCRIPTION FACTOR 49		6		 Other	Os06g0614100	LOC_Os06g41100.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10134	BZIP51	OsbZIP51	b-ZIP TRANSCRIPTION FACTOR 51	b-ZIP transcription factor 51	b-ZIP TRANSCRIPTION FACTOR 51		6	LOC_Os06g42690	 Other		LOC_Os06g42690				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10135	RISBZ5	OsbZIP52	RICE SEED B-ZIPPER 5	b-ZIP transcription factor 52, rice seed b-Zipper 5	RICE SEED B-ZIPPER 5		6	AB053474.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0662200	LOC_Os06g45140.3, LOC_Os06g45140.2, LOC_Os06g45140.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009408 - response to heat	TO:0000432 - temperature response trait	
10136	BZIP53	OsbZIP53, APIP5	b-ZIP TRANSCRIPTION FACTOR 53	b-ZIP transcription factor 53, AvrPiz-t Interacting Protein 5	b-ZIP TRANSCRIPTION FACTOR 53		6	GO:0071294 cellular response to zinc ion. GO:1900150: regulation of defense response to fungus. LOC_Os06g50310.	 Tolerance and resistance - Disease resistance,  Other	Os06g0716800	LOC_Os06g50310.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0031342 - negative regulation of cell killing, GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
10137	BZIP54	OsbZIP54, OsFD6	b-ZIP TRANSCRIPTION FACTOR 54	b-ZIP transcription factor 54, FD Transcription Factor 6	b-ZIP TRANSCRIPTION FACTOR 54		6		 Other	Os06g0719500	LOC_Os06g50480.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10138	BZIP55	OsbZIP55, OsFD2	b-ZIP TRANSCRIPTION FACTOR 55	b-ZIP transcription factor 55, FD Transcription Factor 2	b-ZIP TRANSCRIPTION FACTOR 55		6		 Reproductive organ - Heading date,  Other	Os06g0720900	LOC_Os06g50600.2, LOC_Os06g50600.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
10139	BZIP56	OsbZIP56, OsFD5	b-ZIP TRANSCRIPTION FACTOR 56	b-ZIP transcription factor 56, FD Transcription Factor 5	b-ZIP TRANSCRIPTION FACTOR 56		6		 Other	Os06g0724000	LOC_Os06g50830.2, LOC_Os06g50830.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10140	BZIP57	OsbZIP57	b-ZIP TRANSCRIPTION FACTOR 57	b-ZIP transcription factor 57	b-ZIP TRANSCRIPTION FACTOR 57		7		 Other	Os07g0124300	LOC_Os07g03220.1						
10141	BZIP59	OsbZIP59, BIP125	b-ZIP TRANSCRIPTION FACTOR 59	b-ZIP transcription factor 59, brassinosteroid receptor kinase (BRI1)-interacting protein 125, BRI1-interacting protein 125, brassinosteroid receptor kinase-interacting protein 125	b-ZIP TRANSCRIPTION FACTOR 59		7	AB118012.	 Other	Os07g0209800	LOC_Os07g10890.2, LOC_Os07g10890.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10142	BZIP61	OsbZIP61	b-ZIP TRANSCRIPTION FACTOR 61	b-ZIP transcription factor 61	b-ZIP TRANSCRIPTION FACTOR 61		7		 Other	Os07g0679500	LOC_Os07g48180.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10143	BZIP62	OsbZIP62, OsABF8, OsEEL, EEL	b-ZIP TRANSCRIPTION FACTOR 62	b-ZIP transcription factor 62, ENHANCED EM LEVEL	b-ZIP TRANSCRIPTION FACTOR 62		7	LOC_Os07g48660.	 Other	Os07g0686100	LOC_Os07g48660.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009738 - abscisic acid mediated signaling	TO:0000615 - abscisic acid sensitivity	
10144	BZIP63	OsbZIP63	b-ZIP TRANSCRIPTION FACTOR 63	b-ZIP transcription factor 63	b-ZIP TRANSCRIPTION FACTOR 63		7	HQ858807.	 Other	Os07g0687700	LOC_Os07g48820.2, LOC_Os07g48820.1				GO:0005737 - cytoplasm, GO:0009627 - systemic acquired resistance, GO:0009410 - response to xenobiotic stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009863 - salicylic acid mediated signaling pathway		
10145	BZIP64	OsbZIP64	b-ZIP TRANSCRIPTION FACTOR 64	b-ZIP transcription factor 64	b-ZIP TRANSCRIPTION FACTOR 64		8		 Other	Os08g0176900	LOC_Os08g07970.3, LOC_Os08g07970.2, LOC_Os08g07970.1						
10146	BZIP65	OsbZIP65	b-ZIP TRANSCRIPTION FACTOR 65	b-ZIP transcription factor 65	b-ZIP TRANSCRIPTION FACTOR 65		8		 Other	Os08g0357300	LOC_Os08g26880.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10147	BZIP67	OsbZIP67	b-ZIP TRANSCRIPTION FACTOR 67	b-ZIP transcription factor 67	b-ZIP TRANSCRIPTION FACTOR 67		8		 Other	Os08g0487100	LOC_Os08g38020.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10148	BZIP68	OsbZIP68	b-ZIP TRANSCRIPTION FACTOR 68	b-ZIP transcription factor 68	b-ZIP TRANSCRIPTION FACTOR 68		8		 Other	Os08g0543900	LOC_Os08g43090.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10149	BZIP69	OsbZIP69, OsFD4	b-ZIP TRANSCRIPTION FACTOR 69	b-ZIP transcription factor 69, FD Transcription Factor 4	b-ZIP TRANSCRIPTION FACTOR 69		8		 Other	Os08g0549600	LOC_Os08g43600.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10150	BZIP70	OsbZIP70	b-ZIP TRANSCRIPTION FACTOR 70	b-ZIP transcription factor 70	b-ZIP TRANSCRIPTION FACTOR 70		9		 Other	Os09g0280500	LOC_Os09g10840.2, LOC_Os09g10840.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10151	BZIP71	OsbZIP71	b-ZIP TRANSCRIPTION FACTOR 71	b-ZIP transcription factor 71	b-ZIP TRANSCRIPTION FACTOR 71		9		 Tolerance and resistance - Stress tolerance,  Other	Os09g0306400	LOC_Os09g13575.1, LOC_Os09g13570.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
10152	BZIP72	OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5	b-ZIP TRANSCRIPTION FACTOR 72	b-ZIP transcription factor 72, AREB/ABF-family protein 2	b-ZIP TRANSCRIPTION FACTOR 72		9	LOC_Os09g28310. OsABI5 in Sakuraba et al. 2016.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Other	Os09g0456200	LOC_Os09g28310.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0010150 - leaf senescence	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
10153	TFX1	OsbZIP73, bZIP73, OsTFX1	BZIP TRANSCRIPTION FACTOR TFX1	b-ZIP transcription factor 73, bZIP transcription factor OsTFX1	BZIP TRANSCRIPTION FACTOR TFX1		9		 Tolerance and resistance - Disease resistance,  Other	Os09g0474000	LOC_Os09g29820.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
10154	BZIP74	OsbZIP74, OsTGA10, TGA10	b-ZIP TRANSCRIPTION FACTOR 74	b-ZIP transcription factor 74, TGA factor 10, TGACGTCA cis-element-binding protein 10	b-ZIP TRANSCRIPTION FACTOR 74	ostga10	9	LOC_Os09g31390. a rice homolog of Arabidopsis TGA10.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other	Os09g0489500	LOC_Os09g31390.3, LOC_Os09g31390.2, LOC_Os09g31390.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0048658 - tapetal layer development, GO:0048443 - stamen development, GO:0009556 - microsporogenesis, GO:0005634 - nucleus	TO:0000437 - male sterility	
10155	BZIP76	OsbZIP76	b-ZIP TRANSCRIPTION FACTOR 76	b-ZIP transcription factor 76	b-ZIP TRANSCRIPTION FACTOR 76		9		 Other	Os09g0520400	LOC_Os09g34880.1						
10156	BZIP77	OsbZIP77, OsFD1, FD1	b-ZIP TRANSCRIPTION FACTOR 77	b-ZIP transcription factor 77, basic leucine zipper (bZIP) transcription factor FD1, FD Transcription Factor 1	b-ZIP TRANSCRIPTION FACTOR 77		9	LOC_Os09g36910. a rice FD homologue.	 Reproductive organ - Heading date,  Other	Os09g0540800	LOC_Os09g36910.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:2000028 - regulation of photoperiodism, flowering	TO:0000137 - days to heading, TO:0000621 - inflorescence development trait, TO:0002616 - flowering time	PO:0001083 - inflorescence development stage 
10157	BZIP78	OsbZIP78	b-ZIP TRANSCRIPTION FACTOR 78	b-ZIP transcription factor 78	b-ZIP TRANSCRIPTION FACTOR 78		10		 Other	Os10g0531900	LOC_Os10g38820.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10158	BZIP79	OsbZIP79	b-ZIP TRANSCRIPTION FACTOR 79	b-ZIP transcription factor 79	b-ZIP TRANSCRIPTION FACTOR 79		11		 Other	Os11g0152700	LOC_Os11g05480.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10159	ZIP2A	OsbZIP80, OsZIP-2a	BASIC/LEUCINE ZIPPER FACTOR 2A	b-ZIP transcription factor 80, basic/leucine zipper protein 2a	BASIC/LEUCINE ZIPPER FACTOR 2A		11	U04296.	 Other	Os11g0154900	LOC_Os11g05640.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10160	BZIP81	OsbZIP81	b-ZIP TRANSCRIPTION FACTOR 81	b-ZIP transcription factor 81	b-ZIP TRANSCRIPTION FACTOR 81		11		 Other	Os11g0160500	LOC_Os11g06170.2, LOC_Os11g06170.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10161	BZIP82	OsbZIP82	b-ZIP TRANSCRIPTION FACTOR 82	b-ZIP transcription factor 82	b-ZIP TRANSCRIPTION FACTOR 82		11		 Other	Os11g0218000	LOC_Os11g11100.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10162	BZIP83	OsbZIP83	b-ZIP TRANSCRIPTION FACTOR 83	b-ZIP transcription factor 83	b-ZIP TRANSCRIPTION FACTOR 83		12		 Other	Os12g0152900	LOC_Os12g05680.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10163	RSG	OsbZIP84, BZIP84	REPRESSION OF SHOOT GROWTH	b-ZIP transcription factor 84, repression of shoot growth	b-ZIP TRANSCRIPTION FACTOR 84		12		 Other	Os12g0162500	LOC_Os12g06520.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10164	BZIP85	OsbZIP85	b-ZIP TRANSCRIPTION FACTOR 85	b-ZIP transcription factor 85	b-ZIP TRANSCRIPTION FACTOR 85		12		 Other	Os12g0194600 	LOC_Os12g09250.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10165	ZIP1A	OsbZIP86, OsZIP-1a	BASIC/LEUCINE ZIPPER FACTOR 1A	b-ZIP transcription factor 86, basic/leucine zipper protein 1a	BASIC/LEUCINE ZIPPER FACTOR 1A		12	a homolog of EmBP-1. U04295.	 Other	Os12g0233800	LOC_Os12g13170.3, LOC_Os12g13170.2, LOC_Os12g13170.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10166	BZIP88	OsbZIP88	b-ZIP TRANSCRIPTION FACTOR 88	b-ZIP transcription factor 88	b-ZIP TRANSCRIPTION FACTOR 88		12		 Other	Os12g0601800	LOC_Os12g40920.4, LOC_Os12g40920.3, LOC_Os12g40920.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10167	BZIP89	OsbZIP89	b-ZIP TRANSCRIPTION FACTOR 89	b-ZIP transcription factor 89	b-ZIP TRANSCRIPTION FACTOR 89		12		 Other	Os12g0634500	LOC_Os12g43790.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10168	_	OsZIP-2b	_	basic/leucine zipper protein 2b	_			U04297.	 Other						GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10169	_	OsVDAC4, OsVDAC5, VDAC5	_	voltage-dependent anion-selective channel 4, voltage-dependent anion channel 5	_		3	LOC_Os03g10510. OsVDAC5 in Xu et al. 2015.	 Biochemical character	Os03g0202200	LOC_Os03g10510.2, LOC_Os03g10510.1				GO:0046930 - pore complex, GO:0015288 - porin activity, GO:0008308 - voltage-gated anion channel activity, GO:0005741 - mitochondrial outer membrane		
10170	LEA2	OsLEA2, OsLEA4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 2	late embryogenesis abundant protein 2, late embryogenesis abundant protein 4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 2		6		 Tolerance and resistance - Stress tolerance	Os06g0110200	LOC_Os06g02040.1				GO:0009790 - embryonic development		
10171	LEA1	OsLEA1	LATE EMBRYOGENESIS ABUNDANT PROTEIN 1	late embryogenesis abundant protein 1	LATE EMBRYOGENESIS ABUNDANT PROTEIN 1		4			Os04g0589800	LOC_Os04g49980.1				GO:0009790 - embryonic development		
10172	LEA3	OsLEA3, OsEnS-84	LATE EMBRYOGENESIS ABUNDANT PROTEIN 3	late embryogenesis abundant protein 3, endosperm-specific gene 84	LATE EMBRYOGENESIS ABUNDANT PROTEIN 3		6	LOC_Os06g21910.		Os06g0324400	LOC_Os06g21910.1				GO:0009790 - embryonic development		
10173	LEA4	OsLEA4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4	late embryogenesis abundant protein 4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4		8			Os08g0327700	LOC_Os08g23870.1				GO:0009790 - embryonic development		
10174	LEA6	OsLEA6	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6	late embryogenesis abundant protein 6	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6		1		 Tolerance and resistance - Stress tolerance	Os01g0624400	LOC_Os01g43530.1				GO:0009269 - response to desiccation, GO:0009644 - response to high light intensity, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0009611 - response to wounding		
10175	LEA7	OsLEA7, OsLEA7a, OsLEA7b, OsLEA7c	LATE EMBRYOGENESIS ABUNDANT PROTEIN 7	late embryogenesis abundant protein 7	LATE EMBRYOGENESIS ABUNDANT PROTEIN 7		3	LOC_Os03g62620. GO:2000024: regulation of leaf development. TO:0006064: rolled leaf. the essential genes responsible for creating the gamma-rl mutant (rolled-leaf mutant on chromosome 3) phenotypes.	 Vegetative organ - Leaf,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance	Os03g0843300	LOC_Os03g62620.4, LOC_Os03g62620.3, LOC_Os03g62620.2				GO:0048366 - leaf development, GO:0080113 - regulation of seed growth, GO:0046686 - response to cadmium ion, GO:0009269 - response to desiccation, GO:0005886 - plasma membrane, GO:0080112 - seed growth	TO:0000653 - seed development trait, TO:0000655 - leaf development trait, TO:0000180 - spikelet fertility	
10176	LEA8	OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5	LATE EMBRYOGENESIS ABUNDANT PROTEIN 8	late embryogenesis abundant protein 8, late embryogenesis abundant protein 5	LATE EMBRYOGENESIS ABUNDANT PROTEIN 8		5	LOC_Os05g50710.1 OsLEA5 in Huang et al. 2018.	 Tolerance and resistance - Stress tolerance	Os05g0584200	LOC_Os05g50710.1				GO:0005886 - plasma membrane, GO:0009269 - response to desiccation, GO:0009644 - response to high light intensity, GO:0009611 - response to wounding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0009738 - abscisic acid mediated signaling, GO:0009845 - seed germination, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002667 - abscisic acid content, TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage 
10177	LEA9	OsLEA9, OsLEA5, LEA5	LATE EMBRYOGENESIS ABUNDANT PROTEIN 9	late embryogenesis abundant protein 9	LATE EMBRYOGENESIS ABUNDANT PROTEIN 9		1	LOC_Os01g21250. BF889451. OsLEA5 in Srivastava et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0314800	LOC_Os01g21250.1				GO:0006950 - response to stress, GO:0009409 - response to cold, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000303 - cold tolerance	
10178	LEA10	OsLEA10	LATE EMBRYOGENESIS ABUNDANT PROTEIN 10	late embryogenesis abundant protein 10	LATE EMBRYOGENESIS ABUNDANT PROTEIN 10		2		 Tolerance and resistance - Stress tolerance	Os02g0564600	LOC_Os02g35650.1				GO:0006950 - response to stress		
10179	LEA11	OsLEA11	LATE EMBRYOGENESIS ABUNDANT PROTEIN 11	late embryogenesis abundant protein 11	LATE EMBRYOGENESIS ABUNDANT PROTEIN 11		3		 Tolerance and resistance - Stress tolerance	Os03g0400700	LOC_Os03g28260.1				GO:0006950 - response to stress		
10180	LEA12	OsLEA12	LATE EMBRYOGENESIS ABUNDANT PROTEIN 12	late embryogenesis abundant protein 12	LATE EMBRYOGENESIS ABUNDANT PROTEIN 12		5		 Tolerance and resistance - Stress tolerance	Os05g0362600	LOC_Os05g29930.1				GO:0006950 - response to stress		
10181	LEA13	OsLEA13	LATE EMBRYOGENESIS ABUNDANT PROTEIN 13	late embryogenesis abundant protein 13	LATE EMBRYOGENESIS ABUNDANT PROTEIN 13		8		 Tolerance and resistance - Stress tolerance	Os08g0451300	LOC_Os08g34990.1				GO:0006950 - response to stress		
10182	LEA15	OsLEA15	LATE EMBRYOGENESIS ABUNDANT PROTEIN 15	late embryogenesis abundant protein 15	LATE EMBRYOGENESIS ABUNDANT PROTEIN 15		2			Os02g0250600	LOC_Os02g15250.1						
10183	LEA16	OsLEA16	LATE EMBRYOGENESIS ABUNDANT PROTEIN 16	late embryogenesis abundant protein 16	LATE EMBRYOGENESIS ABUNDANT PROTEIN 16		3	EF444536.	 Tolerance and resistance - Disease resistance	Os03g0168100	LOC_Os03g07180.3, LOC_Os03g07180.2, LOC_Os03g07180.1						
10184	LEA17	OsLEA17, OsLEA3-2, LEA3-2, LEA1	LATE EMBRYOGENESIS ABUNDANT PROTEIN 17	late embryogenesis abundant protein 17	LATE EMBRYOGENESIS ABUNDANT PROTEIN 17		3	LOC_Os03g20680. A3AHG5. JQ043381. OsLEA3-2 in Duan and Cai 2012, Xiong et al. 2018. LEA1 in Kim et al. 2018.	 Tolerance and resistance - Stress tolerance	Os03g0322900	LOC_Os03g20680.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
10185	LEA18	OsLEA18	LATE EMBRYOGENESIS ABUNDANT PROTEIN 18	late embryogenesis abundant protein 18	LATE EMBRYOGENESIS ABUNDANT PROTEIN 18		4			Os04g0610600	LOC_Os04g52110.1						
10186	LEA20	OsLEA20, OsLEA1, OsLEA1a	LATE EMBRYOGENESIS ABUNDANT PROTEIN 20	late embryogenesis abundant protein 20, Late embryogenesis-abundant 1, Late embryogenesis-abundant 1a	LATE EMBRYOGENESIS ABUNDANT PROTEIN 20		1	OsLEA1 in Lee and Huang 2013. OsLEA1a in Shih et al. 2010.		Os01g0159600	LOC_Os01g06630.1				GO:0009738 - abscisic acid mediated signaling	TO:0000615 - abscisic acid sensitivity	PO:0009009 - plant embryo , PO:0005052 - plant callus 
10187	LEA22	OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45	LATE EMBRYOGENESIS ABUNDANT PROTEIN 24	late embryogenesis abundant protein 22, Responsive to abscisic acid 25, Dehydrin RAB25	_		1	P30287. X57327. an osmotic stress responsive dehydrin. OsRab16 in Xu et al. 2013.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0702500	LOC_Os01g50700.1				GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0009415 - response to water, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
10188	LEA24	OsLEA24, WSI724	LATE EMBRYOGENESIS ABUNDANT PROTEIN 24	late embryogenesis abundant protein 24, water stress-induced 724, WATER STRESS INDUCIBLE PROTEIN 724	LATE EMBRYOGENESIS ABUNDANT PROTEIN 24		3	D26538. dehydrin. LOC_Os03g45280. XB21 interacting protein (XB21IP).	 Tolerance and resistance - Stress tolerance	Os03g0655400	LOC_Os03g45280.1				GO:0009409 - response to cold, GO:0009507 - chloroplast	TO:0000303 - cold tolerance	
10189	LEA30	OsLEA30, OsEnS-43	LATE EMBRYOGENESIS ABUNDANT PROTEIN 30	late embryogenesis abundant protein 30, endosperm-specific gene 43	LATE EMBRYOGENESIS ABUNDANT PROTEIN 30		3	LOC_Os03g06360.		Os03g0159600	LOC_Os03g06360.2, LOC_Os03g06360.1						
10190	LEA31	OsLEA31	LATE EMBRYOGENESIS ABUNDANT PROTEIN 31	late embryogenesis abundant protein 31	LATE EMBRYOGENESIS ABUNDANT PROTEIN 31		3			Os03g0747400	LOC_Os03g53610.1						
10191	LEA32	OsLEA32, OsEnS-55	LATE EMBRYOGENESIS ABUNDANT PROTEIN 32	late embryogenesis abundant protein 32, endosperm-specific gene 55	LATE EMBRYOGENESIS ABUNDANT PROTEIN 32		3	LOC_Os03g53620.		Os03g0747500	LOC_Os03g53620.1						
10192	LEA33	OsLEA33, D34, OsEnS-85	LATE EMBRYOGENESIS ABUNDANT PROTEIN 33	late embryogenesis abundant protein 33, endosperm-specific gene 85	LATE EMBRYOGENESIS ABUNDANT PROTEIN 33		6	LOC_Os06g23350.		Os06g0341300	LOC_Os06g23350.1						
10193	LEA34	OsLEA34	LATE EMBRYOGENESIS ABUNDANT PROTEIN 34	late embryogenesis abundant protein 34	LATE EMBRYOGENESIS ABUNDANT PROTEIN 34		9			Os09g0463450	LOC_Os09g28860.1						
10194	Hb2	HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2	HEMOGLOBIN 2	non-symbiotic hemoglobin 2, Non-legume hemoglobin, Phytogb1.2, phytoglobin 1.2	HEMOGLOBIN 2		3	O04986. D25122, D22678, U76028, U76031. AF335503. TO:0020098: nitrate sensitivity. GO:0035864: response to potassium ion. GO:1903409: reactive oxygen species biosynthetic process.	 Biochemical character,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os03g0226200	LOC_Os03g12510.1				GO:0010229 - inflorescence development, GO:0005886 - plasma membrane, GO:0010167 - response to nitrate, GO:0015671 - oxygen transport, GO:0019825 - oxygen binding, GO:0020037 - heme binding, GO:0080033 - response to nitrite, GO:0005618 - cell wall, GO:0051592 - response to calcium ion, GO:0006970 - response to osmotic stress, GO:0005829 - cytosol	TO:0000621 - inflorescence development trait, TO:0000008 - potassium sensitivity, TO:0000609 - potassium content, TO:0000480 - nutrient sensitivity, TO:0000006 - calcium sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000095 - osmotic response sensitivity	PO:0001083 - inflorescence development stage 
10195	ERF127	OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23	ETHYLENE RESPONSE FACTOR 127	rice wax synthesis regulatory gene 3, wax synthesis regulator 3, ethylene response factor 127, APETALA2/ethylene-responsive element binding protein 23	ETHYLENE RESPONSE FACTOR 127		2	LOC_Os02g55380.	 Other	Os02g0797100	LOC_Os02g55380.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
10196	ERF2	OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100	ETHYLENE RESPONSE FACTOR 2	rice wax synthesis regulatory gene 4, wax synthesis regulator 4, ethylene response factor 2, APETALA2/ethylene-responsive element binding protein 100	ETHYLENE RESPONSE FACTOR 2		6	LOC_Os06g08340.	 Other	Os06g0181700	LOC_Os06g08340.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009723 - response to ethylene stimulus, GO:0003700 - transcription factor activity	TO:0000173 - ethylene sensitivity	
10197	_	OsSWAP70A, SWAP70A	_		_		3	a rice homolog of human SWAP70. GO:0035556: intracellular signal transduction.		Os03g0666200	LOC_Os03g46340.1				GO:0005622 - intracellular, GO:0018105 - peptidyl-serine phosphorylation, GO:0004674 - protein serine/threonine kinase activity		
10198	_	OsSWAP70B, SWAP70B, SIP21	_	SKIP interacting protein 21, SKIPa-interacting protein 21, SKIPa-interacting protein 21	_		7	a rice homolog of human SWAP70. EU368711. LOC_Os07g04550. GO:0035556: intracellular signal transduction.		Os07g0138100	LOC_Os07g04550.1				GO:0005622 - intracellular, GO:0004674 - protein serine/threonine kinase activity, GO:0018105 - peptidyl-serine phosphorylation		
10199	_	PBZ1	_	Probenazole1													
10200	_	OsIAS, OsOSC11, IAS, OSC11	_	isoarborinol synthase, oxidosqualene cyclase 11	_		11	LOC_Os11g35710.	 Biochemical character	Os11g0562100	LOC_Os11g35710.1				GO:0008152 - metabolic process, GO:0016866 - intramolecular transferase activity		
10201	_	OsOSC2, CAS1	_	oxidosqualene cyclase 2, cycloartenol synthase 1	_		2	AF169966. Q6Z2X6. LOC_Os02g04710.	 Biochemical character	Os02g0139700	LOC_Os02g04710.2, LOC_Os02g04710.1				GO:0016866 - intramolecular transferase activity, GO:0008152 - metabolic process, GO:0016871 - cycloartenol synthase activity		
10202	_	OsOSC7, OSC7, OsPS, PS, OsOSC7/OsPS, OsOSC7i, OsOSC7j	_	"oxidosqualene cyclase 7, \"2, 3-oxidosqualene cyclase 7\", parkeol synthase"	_		11	LOC_Os11g08569.	 Biochemical character	Os11g0189600	LOC_Os11g08569.1				GO:0016866 - intramolecular transferase activity, GO:0008152 - metabolic process		PO:0020104 - leaf sheath , PO:0020032 - plumule 
10203	_	OsOSC8	_	oxidosqualene cyclase 8, achilleol B synthase	_		11	LOC_Os11g18194.	 Biochemical character	Os11g0285000	LOC_Os11g18194.1				GO:0008152 - metabolic process, GO:0016866 - intramolecular transferase activity		
10204	LCT1	OsLCT1	LOW-AFFINITY CATION TRANSPORTER 1	Low-affinity cation transporter 1			6	Cd transporter. LOC_Os06g38120. TO:0006059: cadmium concentration. TO:0006044: magnesium concentration. TO:0006047: calcium concentration. TO:0006048: manganese concentration. TO:0000513: potassium concentration.	 Biochemical character	Os06g0579200	LOC_Os06g38120.1				GO:0016021 - integral to membrane		
10205	_	gp1	_	Glycoprotein 1, vegetative cell wall protein gp1 precursor	_		7		 Tolerance and resistance - Stress tolerance	Os07g0142200	LOC_Os07g04930.1						
10206	_	OsLKR/SDH, OsLKR, OsSDH	_	lysine ketoglutarate reductase/saccharopine dehydrogenase, lysine ketoglutarate reductase, saccharopine dehydrogenase				AB574188	 Biochemical character						GO:0000166 - nucleotide binding, GO:0016491 - oxidoreductase activity		
10207	_	OsAPC6, APC6	_	Oryza sativa anaphase-promoting complex 6, anaphase-promoting complex 6, anaphase promoting complex/Cyclosome subunit APC6, ANAPHASE PROMOTING COMPLEX 6	_		3	LOC_Os03g13370.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility	Os03g0236900/Os03g0236966					GO:0032875 - regulation of DNA endoreduplication, GO:0010087 - phloem or xylem histogenesis		
10208	_	OsGR1, GR1, OsGR2	_	glutathione reductase 1			3	LOC_Os03g06740. rice chloroplastic GR. OsGR2 (cytosolic GR) in Li et al. 2014. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0163300	LOC_Os03g06740.1				GO:0032929 - negative regulation of superoxide release, GO:0005507 - copper ion binding, GO:0050660 - FAD binding, GO:0045454 - cell redox homeostasis, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0004362 - glutathione-disulfide reductase activity, GO:0009570 - chloroplast stroma, GO:0006749 - glutathione metabolic process, GO:0050661 - NADP or NADPH binding		
10209	_	OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2	_	glutathione reductase 2, glutathione reductase			2	LOC_Os02g56850. P48642. D85751, AB009592, D78136. Cytosolic Glutathione Reductase, rice cytosolic GR. AY136760-AY136766. OsGR3 (chloroplastic isogene) in Li et al. 2014. KC611088-KC611096 (O. sativa and wild rice species, partial cds). AY136765.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0813500	LOC_Os02g56850.4, LOC_Os02g56850.3, LOC_Os02g56850.2, LOC_Os02g56850.1				GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0032928 - regulation of superoxide release, GO:0050661 - NADP or NADPH binding, GO:0009651 - response to salt stress, GO:0004362 - glutathione-disulfide reductase activity, GO:0009635 - response to herbicide, GO:0009414 - response to water deprivation, GO:0005777 - peroxisome, GO:0050660 - FAD binding, GO:0009751 - response to salicylic acid stimulus, GO:0006749 - glutathione metabolic process, GO:0045454 - cell redox homeostasis	TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000058 - herbicide sensitivity	
10210	_	OsGR3, GR3	_	glutathione reductase 3		gr3	10	rice chloroplastic GR. AK108799 = Tc-OsGR3 (truncated OsGR3 sequence) (Wu et al. 2013).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0415300	LOC_Os10g28000.1				GO:0005739 - mitochondrion, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0045454 - cell redox homeostasis, GO:0009651 - response to salt stress, GO:0009570 - chloroplast stroma, GO:0050660 - FAD binding, GO:0006979 - response to oxidative stress, GO:0006749 - glutathione metabolic process, GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0009635 - response to herbicide, GO:0004362 - glutathione-disulfide reductase activity, GO:0009751 - response to salicylic acid stimulus, GO:0032928 - regulation of superoxide release	TO:0000058 - herbicide sensitivity, TO:0002657 - oxidative stress, TO:0000429 - salt sensitivity, TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance	
10211	_	RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3	_	root-specific RCc3, hybrid proline- or glycine-rich protein 1			2	L27208. LOC_Os02g44310. Hydrophobic Protein from Soybean (HPS)-like protein.	 Biochemical character,  Vegetative organ - Root	Os02g0662000	LOC_Os02g44310.1				GO:0006869 - lipid transport		PO:0009005 - root 
10212	_	RCc2, RCg2, OsHyPRP13, HyP/GRP13, OsRCg2	_	root-specific RCc2, hybrid proline- or glycine-rich protein 13			10	L27209, L27210. LOC_Os10g40430. Hydrophobic Protein from Soybean (HPS)-like protein.	 Biochemical character,  Vegetative organ - Root	Os10g0551800 	LOC_Os10g40430.1				GO:0006508 - proteolysis, GO:0008233 - peptidase activity, GO:0006869 - lipid transport		PO:0009005 - root 
10214	GLUC	GluC, OsEnS-36, EnS-36, GLU2.2	GLUTELIN C	Glutelin type-C, endosperm-specific gene 36, gluten 2.2	GLUTELIN C		2	EU264107 (promoter sequence). LOC_Os02g25640. GLU2.2 in Xu et al. 2016.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os02g0453600	LOC_Os02g25640.2, LOC_Os02g25640.1				GO:0009651 - response to salt stress, GO:0009791 - post-embryonic development, GO:0000003 - reproduction, GO:0045735 - nutrient reservoir activity, GO:0048316 - seed development, GO:0009415 - response to water	TO:0006001 - salt tolerance, TO:0000237 - water stress trait, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
10215	GLUD1	GluD1, GluD-1, OsEnS-33, EnS-33	GLUTELIN D	Glutelin type-D, endosperm-specific gene 33	GLUTELIN D		2	AY429650. LOC_Os02g15090.	 Seed - Physiological traits - Storage substances	Os02g0249000	LOC_Os02g15090.1				GO:0045735 - nutrient reservoir activity		
10216	_	Stt3a, STT3	_	oligosaccharyltransferase subunit Stt3a	_		4	co-chaperone.	 Biochemical character	Os04g0675500	LOC_Os04g57890.1				GO:0004576 - oligosaccharyl transferase activity, GO:0006486 - protein amino acid glycosylation, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane		
10217	_	OsDER2, DER2	_	Derlin, DER1-like protein 2, Derlin 2	_		3	LOC_Os03g63520. an ERAD-related protein. Q851X7.		Os03g0852200	LOC_Os03g63520.1				GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane		
10218	_	Hsr203j, OsHsr203j	_		_		1	a cell death marker.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0155000	LOC_Os01g06220.1				GO:0016787 - hydrolase activity, GO:0010446 - response to alkalinity	TO:0000481 - alkali sensitivity	
10219	_	CRT, OsCRT	_	calreticulin	_		3	LOC_Os03g61670.	 Biochemical character	Os03g0832200	LOC_Os03g61670.1				GO:0006457 - protein folding, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0005773 - vacuole, GO:0005509 - calcium ion binding, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0055074 - calcium ion homeostasis, GO:0046686 - response to cadmium ion		
10220	_	OsUPS, OsPUB41	_	"U-box containing E3 ligase induced by phosphate
starvation, plant U-box-containing protein 41, U-box protein 41"	_		3	a U-box protein. JN162673. class III PUB protein (U-box + GKL-box). LOC_Os03g13740. EST: BQ907174, C27098, AU166815.	 Biochemical character	Os03g0240600	LOC_Os03g13740.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
10221	ILA1	OsILA1, OsACTPK4, ACTPK4	INCREASED LEAF ANGLE 1	increased leaf angle1, ACT domain containing protein kinase 4	RAF-LIKE MAPKKK	ila1	6	GO:0035556: intracellular signal transduction.	 Biochemical character,  Vegetative organ - Leaf	Os06g0724900	LOC_Os06g50920.1				GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0004674 - protein serine/threonine kinase activity		
10222	ILA1	IIP1	ILA1 INTERACTING PROTEIN 1	ILA1 interacting protein 1	_		1	an EPR (Eicosapenta peptide repeats) protein.		Os01g0621900	LOC_Os01g43372.1, LOC_Os01g43370.2, LOC_Os01g43370.1				GO:0005516 - calmodulin binding		
10223	IIP2	IIP2	ILA1 INTERACTING PROTEIN 2	ILA1 interacting protein 2	_		2			Os02g0259100	LOC_Os02g15885.1, LOC_Os02g15880.3, LOC_Os02g15880.2, LOC_Os02g15880.1						
10224	IIP3	IIP3	ILA1 INTERACTING PROTEIN 3	ILA1 interacting protein 3	_		2			Os02g0575700 	LOC_Os02g36595.1, LOC_Os02g36590.3, LOC_Os02g36590.2, LOC_Os02g36590.1						
10225	IIP4	IIP4	ILA1 INTERACTING PROTEIN 4	ILA1 interacting protein 4	_		4			Os04g0458200 	LOC_Os04g38525.1, LOC_Os04g38520.1						
10226	IIP5	IIP5	ILA1 INTERACTING PROTEIN 5	ILA1 interacting protein 5	_		4			Os04g0640900 	LOC_Os04g54830.1						
10227	IIP6	IIP6	ILA1 INTERACTING PROTEIN 6	ILA1 interacting protein 6	_		6	LOC_Os06g33180.		Os06g0523100							
10228	ACDR1	OsEDR1, OsACDR1, EDR1	ACCELERATED CELL DEATH AND RESISTANCE 1	Oryza sativa accelerated cell death and resistance 1, accelerated cell death and resistance 1, enhanced disease resistance 1, EDR1 ortholog	_		3	LOC_Os03g06410. AY167575. AF305911. a rice ortholog of Arabidopsis AtEDR1. putative Raf-like MAPKKK.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0160100	LOC_Os03g06410.1				GO:0004709 - MAP kinase kinase kinase activity, GO:0005524 - ATP binding, GO:0009723 - response to ethylene stimulus, GO:0009620 - response to fungus, GO:0009617 - response to bacterium, GO:0009414 - response to water deprivation, GO:0046777 - protein amino acid autophosphorylation, GO:0000186 - activation of MAPKK activity, GO:0000165 - MAPKKK cascade, GO:0008219 - cell death	TO:0000175 - bacterial blight disease resistance	
10229	ERF108	OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2	ETHYLENE RESPONSE FACTOR 108	APETALA2, ethylene response factor 108, APETALA2/ethylene-responsive element binding protein 1, Rice Drought-responsive gene 2	ETHYLENE RESPONSE FACTOR 108		1	KC988330.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0131600	LOC_Os01g04020.2, LOC_Os01g04020.1				GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
10230	ERF72	OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2	ETHYLENE RESPONSE FACTOR 72	ethylene-responsive element-binding protein, ethylene response factor 72, benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 1, benzothiadiazole-induced ethylene responsive transcriptional factor 1, BTH-induced ERF transcriptional factor 1, APETALA2/ethylene-responsive element binding protein 64, ethylene-responsive-element binding protein2			9	AY831392. AAV98700. DQ417199. AF364176.	 Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os09g0434500	LOC_Os09g26420.5, LOC_Os09g26420.4, LOC_Os09g26420.2, LOC_Os09g26420.1				GO:0009620 - response to fungus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent	TO:0000620 - embryo development trait, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000653 - seed development trait	
10231	JAMYB	OsJAmyb, JAmyb, OsJAMyb	JA-REGULATED MYB TRANSCRIPTION FACTOR	JA-regulated myb transcription factor	JA-REGULATED MYB TRANSCRIPTION FACTOR		11	AY026332. CB621845. R2R3-MYB. defense-related transcription factor control gene. a brassinosteroid-response gene.	 Tolerance and resistance - Stress tolerance,  Other	Os11g0684000	LOC_Os11g45740.1				GO:0003677 - DNA binding, GO:0009742 - brassinosteroid mediated signaling, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
10232	_	OsDUF26, CRRSP, OsCRRSP55, CRRSP55	_	domain unknown function 26, Cys Rich Repeat Secretory Protein 55, cysteine-rich repeat secretory protein 55			3	LOC_Os03g16950. GO:0080167 response to karrikin. OsCRRSP55 in Chen et al. 2018.	 Tolerance and resistance	Os03g0277600	LOC_Os03g16950.1						
10233	MPK6	OsMPK6, OsDR6, OsMPK4	MITOGEN-ACTIVATED PROTEIN KINASE 6	mitogen-activated protein kinase 6, MAP kinase 4	MITOGEN-ACTIVATED PROTEIN KINASE 6		10	EF174189. FJ621301. Q336X9. defense-responsive protein. LOC_Os10g38950. OsMPK4 in Wang et al. 2014, Mohanta et al. 2015, Jalmi and Sinha 2016.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0533600	LOC_Os10g38950.1				GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009861 - jasmonic acid and ethylene-dependent systemic resistance, GO:0042539 - hypotonic salinity response, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0000165 - MAPKKK cascade, GO:0009620 - response to fungus, GO:0080026 - response to indolebutyric acid stimulus, GO:0009411 - response to UV, GO:0009863 - salicylic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0006972 - hyperosmotic response, GO:0009734 - auxin mediated signaling pathway, GO:0043622 - cortical microtubule organization, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009751 - response to salicylic acid stimulus	TO:0000160 - UV light sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000175 - bacterial blight disease resistance	
10234	CBP	OsCBP	CALCIUM-BINDING PROTEIN	calcium-binding protein	CALCIUM-BINDING PROTEIN		12		 Biochemical character	Os12g0137100	LOC_Os12g04240.2, LOC_Os12g04240.1				GO:0005509 - calcium ion binding		
10235	CAM	OsCaM	CALMODULIN	calmodulin	CALMODULIN		4		 Biochemical character	Os04g0444200	LOC_Os04g36660.1						
10236	CML4	OsCML4	CALMODULIN-LIKE PROTEIN 4	calmodulin-like 4	CALMODULIN-LIKE PROTEIN 4		3	Q84MN0.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0743500	LOC_Os03g53200.1				GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0019722 - calcium-mediated signaling, GO:0005509 - calcium ion binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus		
10237	REM1.5	OsREM1.5	REMORIN 1.5	remorin1, remorin 1, Remorin 1.5, remorin group 1 member 5	REMORIN 1.5		4	OsREM1.5 in Raffaele et al. 2007 and Gui et al. 2014.		Os04g0533300	LOC_Os04g45070.1				GO:0005886 - plasma membrane, GO:0005773 - vacuole		
10238	MPK7	OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5	MITOGEN-ACTIVATED PROTEIN KINASE 7	mitogen-activated protein kinase 7	MITOGEN-ACTIVATED PROTEIN KINASE 7		5	BF889476. Q67C40. OsMAPK44 in Zhao et al. 2014. OsMAPK20-5 in Li et al. 2019.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os05g0566400	LOC_Os05g49140.1, LOC_Os05g49140.3, LOC_Os05g49140.2				GO:0007263 - nitric oxide mediated signal transduction, GO:0009873 - ethylene mediated signaling pathway, GO:0080027 - response to herbivore, GO:0009723 - response to ethylene stimulus, GO:0009611 - response to wounding, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0009409 - response to cold, GO:0000165 - MAPKKK cascade, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000424 - brown planthopper resistance, TO:0000173 - ethylene sensitivity, TO:0000205 - white-backed planthopper resistance	
10239	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1	PATHOGENESIS-RELATED GENE 10A	Probenazole1, probezanole 1, probenazole-inducible 1, pathogenesis-related gene 10a, pathogenesis-related protein PR-10a, PR protein 10a, pathogenesis-related (PR) 10a, probenazole induced protein 1	PATHOGENESIS-RELATED PROTEIN 10A		12	D38170. a Probenazole-Inducible Gene. AF274850, AAF85972. D82066. BF889432. GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os12g0555500 	LOC_Os12g36880.1				GO:0052543 - callose deposition in cell wall, GO:0009607 - response to biotic stimulus, GO:0006952 - defense response, GO:0009416 - response to light stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010332 - response to gamma radiation, GO:0050832 - defense response to fungus, GO:0016036 - cellular response to phosphate starvation, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0010150 - leaf senescence, GO:0009753 - response to jasmonic acid stimulus, GO:0002237 - response to molecule of bacterial origin, GO:0009751 - response to salicylic acid stimulus	TO:0000482 - chemical stress sensitivity, TO:0000261 - insect damage resistance, TO:0000315 - bacterial disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000249 - leaf senescence	PO:0009009 - plant embryo , PO:0001054 - 4 leaf senescence stage , PO:0009066 - anther , PO:0009074 - style 
10240	PR10B	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b	PATHOGENESIS-RELATED GENE 10B	pathogenesis-related gene 10b, pathogenesis-related protein PR-10b, PROBENAZOLE INDUCED PROTEIN1	PATHOGENESIS-RELATED PROTEIN 10B		12	AF274851, AAF85973. PBZ1 in Chen et al. 2013. PR10 in Rebecca et al. 2010. LOC_Os12g36850.	 Tolerance and resistance - Disease resistance	Os12g0555200	LOC_Os12g36850.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009607 - response to biotic stimulus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
10241	PR10C	RPR10c, PR-10c, PR10c	PATHOGENESIS-RELATED GENE 10C	pathogenesis-related gene 10c, pathogenesis-related protein PR-10c, pathogenesis-related protein PR-10c (PR10c) pseudogene			12	AF274852. a nonfunctional pseudogene.									
10242	FAD3	OsFAD3	OMEGA-3 FATTY ACID DESATURASE 3	w-3 fatty acid desaturase-3	OMEGA-3 FATTY ACID DESATURASE 3		11	D78505. GO:0080167 response to karrikin.	 Biochemical character	Os11g0104400	LOC_Os11g01340.4, LOC_Os11g01340.3, LOC_Os11g01340.2				GO:0042389 - omega-3 fatty acid desaturase activity, GO:0009409 - response to cold, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0009941 - chloroplast envelope		
10243	_	OsMyb2, OSMYB2, MYB2	_	myb transcription factor 2, transcription factor MYB2				D88618.	 Other						GO:0003677 - DNA binding		
10244	_	OsMyb1, OSMYB1, MYB1	_	myb transcription factor 1, transcription factor MYB1				D88617.	 Other						GO:0003677 - DNA binding		
10246	_	OsMyb3, OSMYB3, MYB3	_	myb transcription factor 3, transcription factor MYB3			3	D88619. R2R3-MYB.	 Other	Os03g0410000	LOC_Os03g29614.1				GO:0003677 - DNA binding		
10247	_	OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C	_	myb transcription factor 4, transcription factor MYB4, endosperm-specific gene 11, GLABRA1C, GLABRA 1C			1	D88620. AY459344. R2R3-MYB. LOC_Os01g50110. a homologue of Arabidopsis transcription factor GL1.	 Other	Os01g0695900	LOC_Os01g50110.1				GO:0010468 - regulation of gene expression, GO:0003682 - chromatin binding, GO:0048354 - mucilage biosynthetic process during seed coat development, GO:0010090 - trichome morphogenesis, GO:0003677 - DNA binding		
10248	_	OsMyb5, OSMYB5, MYB5	_	myb transcription factor 5, transcription factor MYB5			5	D88621. AY459341. R2R3-MYB.	 Other	Os05g0490600	LOC_Os05g41166.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
10249	_	OsMyb12	_	myb transcription factor 12, transcription factor MYB12			11	AF172282. AU032361, AU032360. R2R3-MYB. 	 Other	Os11g0207600	LOC_Os11g10130.1				GO:0003677 - DNA binding		
10250	_	OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110	_	myb transcription factor 9, transcription factor MYB9			10	Y11350. OsMyb8 in Baldoni et al. 2013. R2R3-MYB. a MAMP-Responsive MYB Transcription Factor.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os10g0478300	LOC_Os10g33810.1				GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus, GO:0003677 - DNA binding	TO:0000168 - abiotic stress trait, TO:0000179 - biotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000675 - ferulic acid content	
10251	_	OsMyb11, Myb11, OsMYB60, MYB60	_	myb transcription factor 11, transcription factor MYB11			12	LOC_Os12g03150. Y11352. R2R3-MYB. AY459340, CB658779. photosynthetic electron transport related gene. OsMYB60 in Liu et al. 2018. GO:0080167 response to karrikin. TO:0000748: leaf morphology trait.	 Vegetative organ - Leaf,  Other	Os12g0125000	LOC_Os12g03150.1				GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion, GO:0010118 - stomatal movement, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0048366 - leaf development, GO:0009965 - leaf morphogenesis, GO:0009737 - response to abscisic acid stimulus, GO:0009626 - plant-type hypersensitive response, GO:0009617 - response to bacterium, GO:0009416 - response to light stimulus, GO:0009723 - response to ethylene stimulus, GO:0042761 - very-long-chain fatty acid biosynthetic process		PO:0001050 - leaf development stage 
10253	_	OsMyb7	_	myb transcription factor 7, transcription factor MYB7			7	Y11415.	 Other	Os07g0558100	LOC_Os07g37210.1				GO:0003677 - DNA binding		
10254	_	OsMyb10	_	myb transcription factor 10, transcription factor MYB10			9	R2R3-MYB. Y11351.	 Other	Os09g0401000 	LOC_Os09g23620.1				GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus		
10255	_	myb7	_	myb transcription factor 7, transcription factor MYB7			2	X96750, X96749, X89605. R2R3-MYB.	 Other	Os02g0641900	LOC_Os02g42870.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding		
10256	_	Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1	_	lipoxygenase Lox2:Os:1, lipoxygenase 9, lipoxygenase 8, herbivore-induced type 2 13-lipoxygenase, RLL2 lipoxygenase	_		8	LOC_Os08g39840. D14000. P38419. FJ607153. FJ660631 (japonica, OsLOX8), FJ660634 (indica, OsLOX9), AP008214 (25233664-25243037). BAA03102. OsLOX8 and OsLOX9 in Marla and Singh 2012. OsLOX2;1 in Kobayashi et al. 2016, Aung et al. 2018.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0508800	LOC_Os08g39840.1				GO:0009507 - chloroplast, GO:0009695 - jasmonic acid biosynthetic process, GO:0009611 - response to wounding, GO:0016166 - phytoene dehydrogenase activity, GO:0005506 - iron ion binding, GO:0042742 - defense response to bacterium, GO:0010106 - cellular response to iron ion starvation, GO:0016165 - lipoxygenase activity, GO:0051707 - response to other organism, GO:0031408 - oxylipin biosynthetic process	TO:0000224 - iron sensitivity, TO:0002668 - jasmonic acid content, TO:0000175 - bacterial blight disease resistance, TO:0000031 - silicon sensitivity	
10257	XAT2	OsXAT2	XYLAN ARABINOSYLTRANSFERASE 2	xylan arabinosyltransferase2	XYLAN ARABINOSYLTRANSFERASE 2		2	Glycosyltransferase. LOC_Os02g22480.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0330200	LOC_Os02g22480.2, LOC_Os02g22480.1				GO:0019566 - arabinose metabolic process, GO:0045492 - xylan biosynthetic process, GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009827 - plant-type cell wall modification	TO:0000068 - lodging incidence, TO:0002649 - pesticide sensitivity	
10258	XAT3	OsXAT3	XYLAN ARABINOSYLTRANSFERASE 3	xylan arabinosyltransferase3	XYLAN ARABINOSYLTRANSFERASE 3		3	Glycosyltransferase. LOC_Os03g37010.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0567600	LOC_Os03g37010.3, LOC_Os03g37010.2, LOC_Os03g37010.1				GO:0009827 - plant-type cell wall modification, GO:0045492 - xylan biosynthetic process, GO:0019566 - arabinose metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0000068 - lodging incidence	
10259	_	OsPFA-DSP1, OsPP105	_	plant and fungi atypical dual-specificity phosphatase 1, Protein phosphatase 105	_		9	LOC_Os09g05020.	 Biochemical character	Os09g0135700	LOC_Os09g05020.2, LOC_Os09g05020.1				GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity		
10260	_	OsPFA-DSP2, OsPP39	_	plant and fungi atypical dual-specificity phosphatase 2, Protein phosphatase 39	_		2	LOC_Os02g53160.	 Biochemical character	Os02g0771400	LOC_Os02g53160.1				GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity		
10261	_	OsPFA-DSP3	_	plant and fungi atypical dual-specificity phosphatase 3	_		6		 Biochemical character	Os06g0208700	LOC_Os06g10650.1				GO:0004725 - protein tyrosine phosphatase activity, GO:0035335 - peptidyl-tyrosine dephosphorylation		
10262	_	OsPFA-DSP4, OsSTA281	_	plant and fungi atypical dual-specificity phosphatase 4	_		12	LOC_Os12g23190. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0420300	LOC_Os12g23190.1				GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity		PO:0009066 - anther 
10263	_	OsIBR5, IBR5, OsPP85	_	MAPK phosphatase IBR5, indole-3-butyric acid-response 5, Protein phosphatase 85	_		6	LOC_Os06g20340.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0308100	LOC_Os06g20340.2, LOC_Os06g20340.1				GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus, GO:0004725 - protein tyrosine phosphatase activity, GO:0009737 - response to abscisic acid stimulus, GO:0033549 - MAP kinase phosphatase activity		
10264	_	OsDsPTP1, OsPP6	_	Protein phosphatase 6	_		1	LOC_Os01g29469.	 Biochemical character	Os01g0390900	LOC_Os01g29469.1				GO:0033549 - MAP kinase phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
10265	_	OsPHS1a, OsPP3	_	Protein phosphatase 3	_		1	LOC_Os01g20940.	 Biochemical character	Os01g0311500	LOC_Os01g20940.1				GO:0004725 - protein tyrosine phosphatase activity, GO:0043622 - cortical microtubule organization, GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0010468 - regulation of gene expression, GO:0010119 - regulation of stomatal movement, GO:0009737 - response to abscisic acid stimulus, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0005737 - cytoplasm		
10266	_	OsPHS1b, OsPP4, OsSTA14	_	Protein phosphatase 4	_		1	LOC_Os01g24470. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0347000	LOC_Os01g24470.2, LOC_Os01g24470.1				GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity, GO:0005737 - cytoplasm, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0033549 - MAP kinase phosphatase activity, GO:0008270 - zinc ion binding		PO:0009066 - anther 
10267	PUT2	OsPUT2, OsLAT7	POLYAMINE UPTAKE TRANSPORTER 2	PA uptake transporter 2, polyamine uptake transporter 2			12	LOC_Os12g39080.	 Biochemical character	Os12g0580400	LOC_Os12g39080.1				GO:0015606 - spermidine transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity, GO:0015848 - spermidine transport		
10268	_	OsChlH, ChlH, CHLH, OsCHLH	_	magnesium chelatase subunit ChlH, magnesium chelatase porphyrin-binding subunit, Magnesium chelatase (MgCh) H subunit, Mg-chelatase H subunit			3	LOC_Os03g20700. Q10M50.	 Biochemical character,  Coloration - Chlorophyll	Os03g0323200	LOC_Os03g20700.2, LOC_Os03g20700.1				GO:0015995 - chlorophyll biosynthetic process, GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0000166 - nucleotide binding, GO:0016851 - magnesium chelatase activity		
10270	YGL98	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3	YELLOW-GREEN LEAF 98	magnesium chelatase subunit ChlD, magnesium-chelatase ChlD subunit, yellow-green leaf mutant 98, yellow-green leaf 7, magnesium-chelatase ChlD protein, MgCh D subunit, D-subunit of Mg-chelatase, Mg-chelatase D subunit, yellow green leaf3, yellow green leaf 3		ygl98, Chlorina-1, Chl1, Ygl3, ygl3, ygl7	3	LOC_Os03g59640. Q6ATS0. YGL3 in Tian et al. 2013. YGL7 in Deng et al. 2014.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os03g0811100	LOC_Os03g59640.1				GO:0015979 - photosynthesis, GO:0009637 - response to blue light, GO:0009658 - chloroplast organization, GO:0017111 - nucleoside-triphosphatase activity, GO:0016851 - magnesium chelatase activity, GO:0005524 - ATP binding, GO:0015995 - chlorophyll biosynthetic process, GO:0009507 - chloroplast	TO:0000159 - blue light sensitivity, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	PO:0025034 - leaf , PO:0020104 - leaf sheath 
10271	_	GRP162	_	Glycine-Rich Protein GRP162, a Gly-rich protein encoding 162 amino acids, glycine-rich protein 162			12	a partner protein of RF5. AK289192. D22643, D15398. Embryonic abundant protein, glycine-rich. Glycine-rich RNA-binding protein. a subunit of the restoration of fertility complex (RFC).	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os12g0632000	LOC_Os12g43600.1				GO:0009409 - response to cold, GO:0003690 - double-stranded DNA binding, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0032508 - DNA duplex unwinding, GO:0010501 - RNA secondary structure unwinding, GO:0007623 - circadian rhythm, GO:0045087 - innate immune response, GO:0009507 - chloroplast, GO:0005618 - cell wall, GO:0009651 - response to salt stress, GO:0010043 - response to zinc ion, GO:0000166 - nucleotide binding, GO:0006406 - mRNA export from nucleus, GO:0003697 - single-stranded DNA binding, GO:0010119 - regulation of stomatal movement, GO:0009737 - response to abscisic acid stimulus, GO:0010228 - vegetative to reproductive phase transition, GO:0005777 - peroxisome	TO:0000497 - fertility restoration trait	
10272	RSS3		RICE SALT SENSITIVE 3	RICE SALT SENSITIVE3		rss3	11	Loss of function of this gene results in impaired root growth under salinity conditions. AB753860. GO:2000280: regulation of root development. LOC_Os11g25920.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os11g0446000	LOC_Os11g25920.1				GO:0048364 - root development, GO:0009826 - unidimensional cell growth, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0000656 - root development trait, TO:0000227 - root length, TO:0006001 - salt tolerance	PO:0000025 - root tip , PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage 
10273	RSS1		RICE SALT SENSITIVE 1			rss1-1, rss1-2, rss1-3	2	Loss of function of this gene results in extreme dwarf and short-root phenotype under high-salt, but not normal growth conditions. Oryza sativa cv. Nipponbare. Tos17 insertional line (Miyao et al., 2003. The Plant Cell 15:1771-1780). ND1004(rss1-1), NC8328(rss1-2), H0851(rss1-3). LOC_Os02g39390.	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0606700	LOC_Os02g39390.2, LOC_Os02g39390.1				GO:0009651 - response to salt stress	TO:0000227 - root length, TO:0006001 - salt tolerance, TO:0000207 - plant height	
10274	TOM1	OsTOM1, ZIFL4, OsZIFL4	TRANSPORTER OF MUGINEIC ACID 1	Transporter of mugineic acids 1, zinc-induced facilitator-like 4	TRANSPORTER OF MUGINEIC ACID 1		11	Efflux transporter of phytosiderophore. MAs (mugineic acid family phytosiderophores) efflux transporter. GO:0080167:response to karrikin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0134900	LOC_Os11g04020.1				GO:0055069 - zinc ion homeostasis, GO:0010043 - response to zinc ion, GO:0055085 - transmembrane transport, GO:0009624 - response to nematode, GO:0009705 - plant-type vacuole membrane, GO:0010106 - cellular response to iron ion starvation, GO:0016021 - integral to membrane	TO:0000224 - iron sensitivity	
10276	ENA1	OsENA1	EFFLUX TRANSPORTER OF NICOTIANAMINE 1	Efflux transporter of nicotianamine 1			11	Efflux transporter of nicotianamine. NA (nicotianamine) efflux transporter.	 Biochemical character	Os11g0151500	LOC_Os11g05390.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0055085 - transmembrane transport		
10277	GRF2	OsGRF2	GROWTH-REGULATING FACTOR 2	growth-regulating factor2	GROWTH-REGULATING FACTOR 2		6	BK004857. Q6AWY7.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0204800	LOC_Os06g10310.1				GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0005524 - ATP binding	TO:0000074 - blast disease	
10278	GRF3	OsGRF3	GROWTH-REGULATING FACTOR 3	growth-regulating factor3	GROWTH-REGULATING FACTOR 3		4	BK004858, AU182732, AU086039, D40475. Q6AWY6.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance	Os04g0600900	LOC_Os04g51190.3, LOC_Os04g51190.2, LOC_Os04g51190.1				GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000074 - blast disease, TO:0000207 - plant height, TO:0002616 - flowering time	
10279	GS2	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2	GRAIN SIZE 2	growth-regulating factor4, Growth-Regulating Factor 4, GRAIN SIZE ON CHROMOSOME 2, PANICLE TRAITS 2, grain length and width 2	GROWTH-REGULATING FACTOR 4	OsGRF4NGR2, OsGRF4ngr2, osgrf4	2	BK004859. Q6ZIK5. AJ566408. GO:0072488: ammonium transmembrane transport. GO:0071704: organic substance metabolic process.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed,  Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Character as QTL - Yield and productivity,  Other	Os02g0701300	LOC_Os02g47280.2, LOC_Os02g47280.1				GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus, GO:0040008 - regulation of growth, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0051781 - positive regulation of cell division, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016563 - transcription activator activity, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0030307 - positive regulation of cell growth, GO:0051510 - regulation of unidimensional cell growth	TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000402 - grain width, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000653 - seed development trait, TO:0000620 - embryo development trait, TO:0002616 - flowering time, TO:0000207 - plant height, TO:0000449 - grain yield per plant, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0002730 - grain shape, TO:0000040 - panicle length, TO:0002660 - cytokinin content, TO:0000382 - 1000-seed weight, TO:0000473 - grain shattering	
10280	GRF6	OsGRF6	GROWTH-REGULATING FACTOR 6	growth-regulating factor6, GROWTH REGULATING FACTOR 6	GROWTH-REGULATING FACTOR 6	grf6, osgrf6	3	BK004861. AJ575243. (GRF6) is one of the targets of miR396 (Li et al. 2010). OsmiR396d target gene (Tang et al. 2018) TO:0000816: inflorescence bract anatomy and morphology trait. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Vegetative organ - Culm,  Seed,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0729500	LOC_Os03g51970.1				GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0009739 - response to gibberellin stimulus, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0051510 - regulation of unidimensional cell growth	TO:0000396 - grain yield, TO:0000074 - blast disease, TO:0006022 - floral organ development trait, TO:0000240 - sterile lemma length, TO:0000620 - embryo development trait, TO:0000653 - seed development trait, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0002675 - gibberellic acid content	
10281	GRF7	OsGRF7	GROWTH-REGULATING FACTOR 7	growth-regulating factor7	GROWTH-REGULATING FACTOR 7		12	BK004862. Q6AWY2. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os12g0484900	LOC_Os12g29980.2, LOC_Os12g29980.1				GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	TO:0000396 - grain yield, TO:0000074 - blast disease	
10282	GRF8	OsGRF8	GROWTH-REGULATING FACTOR 8	growth-regulating factor8	GROWTH-REGULATING FACTOR 8		11	BK004863. Q6AWY1. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os11g0551900	LOC_Os11g35030.2, LOC_Os11g35030.1				GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	TO:0000290 - flavonoid content, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease	
10283	GRF9	OsGRF9	GROWTH-REGULATING FACTOR 9	growth-regulating factor9	GROWTH-REGULATING FACTOR 9		3	BK004878. Q9FRG8. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0674700	LOC_Os03g47140.1				GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	TO:0000074 - blast disease	
10284	GRF10	OsGRF10	GROWTH-REGULATING FACTOR 10	growth-regulating factor10	GROWTH-REGULATING FACTOR 10	grf10	2	BK004879. Q6EPP9. Os02g0678800 (GRF10) is one of the targets of miR396 (Li et al. 2010). TO:0000816: inflorescence bract anatomy and morphology trait.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0678800	LOC_Os02g45570.2, LOC_Os02g45570.1				GO:0016563 - transcription activator activity, GO:0006351 - transcription, DNA-dependent, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0005524 - ATP binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0006022 - floral organ development trait, TO:0000207 - plant height, TO:0000240 - sterile lemma length	
10285	GRF11	OsGRF11	GROWTH-REGULATING FACTOR 11	growth-regulating factor11	GROWTH-REGULATING FACTOR 11		7	BK004880, D40170, AU174496. Q6AWX8.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0467500	LOC_Os07g28430.1				GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	TO:0000074 - blast disease	
10286	GRF12	OsGRF12	GROWTH-REGULATING FACTOR 12	growth-regulating factor12	GROWTH-REGULATING FACTOR 12		4	BK004881. Q6AWX7.	 Biochemical character	Os04g0574500	LOC_Os04g48510.1				GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides		
10287	GRF5	OsGRF5	GROWTH-REGULATING FACTOR 5	growth-regulating factor5	GROWTH-REGULATING FACTOR 5		6	BK004860. Q6AWY4. AJ566409. 	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed,  Tolerance and resistance - Disease resistance,  Other	Os06g0116200	LOC_Os06g02560.3, LOC_Os06g02560.2, LOC_Os06g02560.1				GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0006351 - transcription, DNA-dependent	TO:0000074 - blast disease, TO:0000207 - plant height, TO:0002616 - flowering time, TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
10288	GLP8-4	OsGLP8-4, GER1. OsGer1	GERMIN-LIKE PROTEIN 8-4	Germin-like protein 8-4, germin-like protein 1	GERMIN-LIKE PROTEIN 8-4		8	AF032971. Q6YZZ6.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0189300	LOC_Os08g08980.1				GO:0009607 - response to biotic stimulus, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009010 - seed 
10289	GLP8-10	OsGLP8-10, OsRGLP2, RGLP2	GERMIN-LIKE PROTEIN 8-10	Germin-like protein 8-10	GERMIN-LIKE PROTEIN 8-10		8		 Reproductive organ - panicle,  Seed - Physiological traits - Storage substances,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0189900	LOC_Os08g09060.1				GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect, GO:0009409 - response to cold, GO:0034059 - response to anoxia, GO:0002242 - defense response to parasitic plant, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance, TO:0000015 - oxygen sensitivity, TO:0000444 - parasitic weed, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
10290	GLP12-4	OsGLP12-4	GERMIN-LIKE PROTEIN 12-4		GERMIN-LIKE PROTEIN 12-4		12		 Seed - Physiological traits - Storage substances	Os12g0155000	LOC_Os12g05880.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast		
10291	TMT1	OsTMT1	TONOPLAST MONOSACCHARIDE TRANSPORTER 1		TONOPLAST MONOSACCHARIDE TRANSPORTER 1		10	GU066765	 Biochemical character	Os10g0539900	LOC_Os10g39440.2, LOC_Os10g39440.1					TO:0000333 - sugar content	
10292	TMT2	OsTMT2	TONOPLAST MONOSACCHARIDE TRANSPORTER 2		TONOPLAST MONOSACCHARIDE TRANSPORTER 2		2	GU066766. Vacuolar sugar transport.	 Biochemical character	Os02g0229400	LOC_Os02g13560.4, LOC_Os02g13560.3, LOC_Os02g13560.2, LOC_Os02g13560.1					TO:0000333 - sugar content	
10293	TDC1	OsTDC, TDC2, OsTDC1	TRYPTOPHAN DECARBOXYLASE 1	Trp decarboxylase 1	TRYPTOPHAN DECARBOXYLASE 1		8	LOC_Os08g04540. Senescence-induced serotonin biosynthesis. Aromatic L-amino acid decarboxylase (AADC) (E.C.4.1.1.28) TDC2 in Liu et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0140300	LOC_Os08g04540.1				GO:0009411 - response to UV, GO:0016831 - carboxy-lyase activity, GO:0009851 - auxin biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0006520 - cellular amino acid metabolic process	TO:0000160 - UV light sensitivity	
10294	TDC2	OsTDC2	TRYPTOPHAN DECARBOXYLASE 2	Trp decarboxylase 2	TRYPTOPHAN DECARBOXYLASE 2		7	LOC_Os07g25590. Q7XHL3. E.C.4.1.1.28	 Biochemical character	Os07g0437500	LOC_Os07g25590.1				GO:0009611 - response to wounding, GO:0006520 - cellular amino acid metabolic process, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding, GO:0042427 - serotonin biosynthetic process, GO:0009851 - auxin biosynthetic process, GO:0004058 - aromatic-L-amino-acid decarboxylase activity, GO:0004837 - tyrosine decarboxylase activity		
10295	TYDC	TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3	TYROSHINE DECARBOXYLASE	Tyr decarboxylase, tryptophan decarboxylase	TYROSHINE DECARBOXYLASE		1	AB162137. Conversion of tyrosine into tyramine. Aromatic L-amino acid decarboxylase (E.C.4.1.1.28) LOC_Os01g56380.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0770200	LOC_Os01g56380.1				GO:0030170 - pyridoxal phosphate binding, GO:0006520 - cellular amino acid metabolic process, GO:0016831 - carboxy-lyase activity	TO:0000074 - blast disease, TO:0000075 - light sensitivity	
10296	-	OsRecQ1	-	QDE-3 homologue in rice, RecQ DNA helicase, RecQ-like helicase 1			11			Os11g0672700	LOC_Os11g44910.3, LOC_Os11g44910.2, LOC_Os11g44910.1				GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0003676 - nucleic acid binding, GO:0006310 - DNA recombination		
10297	CYP704B2	OsCYP704B2	CYTOCHROME P450 HYDROXYLASE 704B2	Cytochrome P450 704B2	CYTOCHROME P450 HYDROXYLASE 704B2	cyp704b2	3	Anther cutin biosynthesis and pollen exine formation. fatty acid omega-hysroxylase. cyp704b2 rice mutants exhibit anther cuticle defects (Li et al., 2010).	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0168600	LOC_Os03g07250.1				GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0010208 - pollen wall assembly, GO:0018685 - alkane 1-monooxygenase activity, GO:0048653 - anther development, GO:0080110 - sporopollenin biosynthetic process		PO:0001004 - anther development stage 
10298	_	OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, COL4, BBX5, CCT06	_	CONSTANS-like gene 4, B-box-containing protein 5, CCT domain-containing gene 6, CCT (CO, CO-LIKE and TOC1) domain protein 6, CCT domain protein 6		oscol4	2	CO-like protein containing two B-box zinc finger domains and one CCT domain. floral repressor. 	 Reproductive organ - Heading date	Os02g0610500	LOC_Os02g39710.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading	PO:0009066 - anther , PO:0009049 - inflorescence , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed 
10299	_	OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31	_	CONSTANS-like gene B, B-box-containing protein 27, CCT domain-containing gene 31, CCT (CO, CO-LIKE and TOC1) domain protein 31, CCT domain protein 31			9	AB001887, S12569. CT835894. Zinc-finger Protein. floral repressor.	 Reproductive organ - Heading date	Os09g0240200 	LOC_Os09g06464.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system 
10305	-	OsI	-	CONSTANS-like gene I			7	AP005307 (Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0046D03). 									
10306	-	OsJ	-	CONSTANS-like gene J			3	AC087181									
10307	-	OsK	-	CONSTANS-like gene K													
10308	-	OsL	-	CONSTANS-like gene L			6	AP004993									
10309	-	OsM	-	CONSTANS-like gene M													
10310	_	OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2	_	CONSTANS-like gene N, B-box-containing protein 7, CCT domain-containing gene 8, CCT (CO, CO-LIKE and TOC1) domain protein 8, CCT domain protein 8			2	S3574, AB001888. CT832281, CT832280, CT832282, CT832279. Zinc-finger Protein. 	 Tolerance and resistance - Stress tolerance	Os02g0724000	LOC_Os02g49230.1, LOC_Os02g49230.2, LOC_Os02g49230.3, LOC_Os02g49230.6, LOC_Os02g49230.5, LOC_Os02g49230.4				GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0010039 - response to iron ion, GO:0010045 - response to nickel ion, GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000224 - iron sensitivity	PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0009089 - endosperm , PO:0009010 - seed 
10311	-	OsO	-	CONSTANS-like gene O													
10312	_	OsP, OsBBX9, OsCCT12, BBX9, CCT12	_	CONSTANS-like gene P, B-box-containing protein 9, CCT domain-containing gene 12, CCT (CO, CO-LIKE and TOC1) domain protein 12, CCT domain protein 12			3	AB001882. Zinc-finger Protein	 Tolerance and resistance - Stress tolerance	Os03g0351100	LOC_Os03g22770.2, LOC_Os03g22770.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005622 - intracellular, GO:0008270 - zinc ion binding	TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed 
10314	_	Os3378-1	_	Mutatorlike element Os3378-1, MULE Os3378-1			5	AP008211: 1334664 to 18339057	 Other								
10315	_	Os3378-2	_	Mutatorlike element Os3378-2, MULE Os3378-2			4	AP008210: 16795928-16800322	 Other								
10316	_	Os3378-3	_	Mutatorlike element Os3378-3, MULE Os3378-3			4	AP008210: 16760748-168756355	 Other								
10317	_	Os3378-4	_	Mutatorlike element Os3378-4, MULE Os3378-4			11	AP008217: 28527877-28531720. truncated element	 Other								
10318	_	OsCBSX1, Cen8.t00941	_	cystathionine b-synthase domain containing protein OsCBSX1, CBS domain containing protein OsCBSX1	_		8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22149.		Os08g0313200	LOC_Os08g22149.1				GO:0009570 - chloroplast stroma		
10319	_	OsCBSX2	_	cystathionine b-synthase domain containing protein OsCBSX2, CBS domain containing protein OsCBSX2	_		9			Os09g0115500	LOC_Os09g02710.1				GO:0009570 - chloroplast stroma		
10320	_	OsCBSX3, OsCBSX3a, OsCBSX3b, OsCBSX3c, OsCBSX3d, OsCBSX3e	_	cystathionine b-synthase domain containing protein OsCBSX3, CBS domain containing protein OsCBSX3	_		2		 Biochemical character	Os02g0818000	LOC_Os02g57280.8, LOC_Os02g57280.7, LOC_Os02g57280.6, LOC_Os02g57280.5, LOC_Os02g57280.4, LOC_Os02g57280.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
10321	_	OsCBSX4, OsCBSX4a, OsCBSX4b, OsCBSX4c, OsCBSX4d, OsCBSX4e, OsCBSX4f	_	cystathionine b-synthase domain containing protein OsCBSX4, CBS domain containing protein OsCBSX4	_		3		 Biochemical character	Os03g0737000	LOC_Os03g52690.8, LOC_Os03g52690.7, LOC_Os03g52690.6, LOC_Os03g52690.5, LOC_Os03g52690.4, LOC_Os03g52690.3, LOC_Os03g52690.2, LOC_Os03g52690.1				GO:0003824 - catalytic activity, GO:0050897 - cobalt ion binding, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0008152 - metabolic process		
10322	_	OsCBSX5	_	cystathionine b-synthase domain containing protein OsCBSX5, CBS domain containing protein OsCBSX5	_		4		 Biochemical character	Os04g0136700	LOC_Os04g05010.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
10323	_	OsCBSX6	_	cystathionine b-synthase domain containing protein OsCBSX6, CBS domain containing protein OsCBSX6	_		1		 Biochemical character	Os01g0634900	LOC_Os01g44360.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
10324	_	OsCBSX7, OsCBSX7a, OsCBSX7b, OsCBSCBS1	_	cystathionine b-synthase domain containing protein OsCBSX7, CBS domain containing protein OsCBSX7	_		1	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified.	 Biochemical character	Os01g0586600	LOC_Os01g40420.3, LOC_Os01g40420.2, LOC_Os01g40420.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
10325	_	OsCBSX8	_	cystathionine b-synthase domain containing protein OsCBSX8, CBS domain containing protein OsCBSX8	_		3		 Biochemical character	Os03g0856400	LOC_Os03g63940.1				GO:0042149 - cellular response to glucose starvation, GO:0016301 - kinase activity		
10326	_	OsCBSX9	_	cystathionine b-synthase domain containing protein OsCBSX9, CBS domain containing protein OsCBSX9	_		2			Os02g0158900	LOC_Os02g06410.1						
10327	_	OsCBSX10	_	cystathionine b-synthase domain containing protein OsCBSX10, CBS domain containing protein OsCBSX10	_		1		 Biochemical character	Os01g0633400	LOC_Os01g44250.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
10328	_	OsCBSX11	_	cystathionine b-synthase domain containing protein OsCBSX11, CBS domain containing protein OsCBSX11	_		2			Os02g0639300	LOC_Os02g42640.1						
10329	_	OsCBSX12	_	cystathionine b-synthase domain containing protein OsCBSX12, CBS domain containing protein OsCBSX12	_		4			Os04g0679600	LOC_Os04g58310.1						
10330	CBSCLC1	OsCBSCLC1	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 1	cystathionine b-synthase domain containing protein OsCBSCLC1, CBS domain containing protein OsCBSCLC1, CBS domain containing protein 1	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 1		1	These CBSCLC proteins belong to chloride channel protein (CLC) family. LOC_Os01g65500.	 Reproductive organ	Os01g0876100	LOC_Os01g65500.1				GO:0005247 - voltage-gated chloride channel activity, GO:0009705 - plant-type vacuole membrane, GO:0005886 - plasma membrane		PO:0000084 - plant sperm cell 
10331	CBSCLC2	OsCBSCLC2	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 2	cystathionine b-synthase domain containing protein OsCBSCLC2, CBS domain containing protein OsCBSCLC2, CBS domain containing protein 2	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 2		1	These CBSCLC proteins belong to chloride channel protein (CLC) family.		Os01g0704700	LOC_Os01g50860.1				GO:0009535 - chloroplast thylakoid membrane, GO:0005247 - voltage-gated chloride channel activity		
10332	CBSCLC3	OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 3	cystathionine b-synthase domain containing protein OsCBSCLC3, CBS domain containing protein OsCBSCLC3, CBS domain containing protein 3, Cl-channel 1	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 3		2	These CBSCLC proteins belong to chloride channel protein (CLC) family. LOC_Os02g35190.		Os02g0558100	LOC_Os02g35190.2, LOC_Os02g35190.1				GO:0016021 - integral to membrane, GO:0005247 - voltage-gated chloride channel activity		
10333	CBSCLC4	OsCBSCLC4	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 4	cystathionine b-synthase domain containing protein OsCBSCLC4, CBS domain containing protein OsCBSCLC4, CBS domain containing protein 4	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 4		3	These CBSCLC proteins belong to chloride channel protein (CLC) family.		Os03g0695700	LOC_Os03g48940.3, LOC_Os03g48940.2, LOC_Os03g48940.1				GO:0005216 - ion channel activity, GO:0010038 - response to metal ion, GO:0009826 - unidimensional cell growth, GO:0005802 - trans-Golgi network		
10334	CBSCLC5	OsCBSCLC5	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 5	cystathionine b-synthase domain containing protein OsCBSCLC5, CBS domain containing protein OsCBSCLC5, CBS domain containing protein 5	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 5		4	These CBSCLC proteins belong to chloride channel protein (CLC) family.		Os04g0644800	LOC_Os04g55210.1				GO:0005247 - voltage-gated chloride channel activity, GO:0016020 - membrane		
10335	CBSCLC6	OsCBSCLC6, OsCBSCLC6a, OsCBSCLC6b	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 6	cystathionine b-synthase domain containing protein OsCBSCLC6, CBS domain containing protein OsCBSCLC6, CBS domain containing protein 6	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 6		8	These CBSCLC proteins belong to chloride channel protein (CLC) family.		Os08g0300300	LOC_Os08g20570.2, LOC_Os08g20570.1						
10336	CBSCLC7	OsCBSCLC7	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 7	cystathionine b-synthase domain containing protein OsCBSCLC7, CBS domain containing protein OsCBSCLC7, CBS domain containing protein 7	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 7		12	These CBSCLC proteins belong to chloride channel protein (CLC) family.		Os12g0438600	LOC_Os12g25200.1				GO:0009671 - nitrate:hydrogen symporter activity, GO:0009705 - plant-type vacuole membrane, GO:0016021 - integral to membrane, GO:0005247 - voltage-gated chloride channel activity, GO:0010167 - response to nitrate		
10337	CBSCLC8	OsCBSCLC8	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 8	cystathionine b-synthase domain containing protein OsCBSCLC8, CBS domain containing protein OsCBSCLC8, CBS domain containing protein 8	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 8		8	These CBSCLC proteins belong to chloride channel protein (CLC) family.	 Biochemical character	Os08g0499200	LOC_Os08g38980.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0005247 - voltage-gated chloride channel activity, GO:0009507 - chloroplast, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
10338	CBSCLC9	OsCBSCLC9, OsCBSCLC9a, OsCBSCLC9b	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 9	cystathionine b-synthase domain containing protein OsCBSCLC9, CBS domain containing protein OsCBSCLC9, CBS domain containing protein 9	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 9		2	These CBSCLC proteins belong to chloride channel protein (CLC) family.	 Biochemical character	Os02g0720700	LOC_Os02g48880.2, LOC_Os02g48880.1				GO:0005247 - voltage-gated chloride channel activity, GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0008152 - metabolic process, GO:0005794 - Golgi apparatus, GO:0003824 - catalytic activity		
10339	CBSCLC10	OsCBSCLC10, OsCBSCLC10a, OsCBSCLC10b	CYSTATHIONINE B-SYSTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 10	cystathionine b-synthase domain containing protein OsCBSCLC10, CBS domain containing protein OsCBSCLC10, CBS domain containing protein 10	CYSTATHIONINE B-SYSTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 10		4	These CBSCLC proteins belong to chloride channel protein (CLC) family. LOC_Os04g36560 (not found in MSU Rice Genome Annotation Project Release 7 data).									
10340	_	OsCBSDUFCH1, OsCBSDUFCH1a, OsCBSDUFCH1b	_	cystathionine b-synthase domain containing protein OsCBSDUFCH1, CBS domain containing protein OsCBSDUFCH1	_		3	These CBSDUFCH proteins contain a domain of unknown function (DUF21)(PF01595) at the N-terminus adjacent to a CBS domain and a CorC_HlyC domain (PF03471) at the C-terminus.		Os03g0593200	LOC_Os03g39640.2				GO:0050660 - FAD binding		
10341	_	OsCBSSIS1	_	cystathionine b-synthase domain containing protein OsCBSSIS1, CBS domain containing protein OsCBSSIS1, Rib-5-P isomerase	_		2	Proteins containing sugar isomerase (SIS) domain along with a CBS domain have been classified in this CBSSIS subgroup.	 Biochemical character	Os02g0158300	LOC_Os02g06360.1				GO:0005975 - carbohydrate metabolic process, GO:0030246 - carbohydrate binding, GO:0016853 - isomerase activity		
10342	_	OsCBSDUF1, OsCBSDUF1a, OsCBSDUF1b	_	cystathionine b-synthase domain containing protein OsCBSDUF1, CBS domain containing protein OsCBSDUF1	_		5	Proteins classified in this CBSDUF subgroup contain a DUF21 domain at the N-terminus, along with a CBS domain.		Os05g0395300	LOC_Os05g32850.2, LOC_Os05g32850.1				GO:0005739 - mitochondrion		
10343	_	OsCBSDUF2	_	cystathionine b-synthase domain containing protein OsCBSDUF2, CBS domain containing protein OsCBSDUF2	_		3	Proteins classified in this CBSDUF subgroup contain a DUF21 domain at the N-terminus, along with a CBS domain.		Os03g0674300	LOC_Os03g47120.1				GO:0005886 - plasma membrane		
10344	_	OsCBSDUF3, OsSTA88	_	cystathionine b-synthase domain containing protein OsCBSDUF3, CBS domain containing protein OsCBSDUF3	_		3	Proteins classified in this CBSDUF subgroup contain a DUF21 domain at the N-terminus, along with a CBS domain. LOC_Os03g03430. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0125800	LOC_Os03g03430.1						PO:0009066 - anther 
10345	_	OsCBSPPR1	_	cystathionine b-synthase domain containing protein OsCBSPPR1, CBS domain containing protein OsCBSPPR1	_		9	This CBSPPR subgroup is composed of a single gene encoding for a single protein, containing a pentatricopeptide repeat (PPR) motif and a CBSdomain.	 Biochemical character	Os09g0431600	LOC_Os09g26190.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
10346	_	CBSIMPDH1, OsCBSIMPDH1, OsCBSIMPDH1a, OsCBSIMPDH1b, IMPDH, OsIMPDH	_	cystathionine b-synthase domain containing protein OsCBSIMPDH1, CBS domain containing protein OsCBSIMPDH1, IMP dehydrogenase	_		3	Proteins containing inosine-5'-monophosphate dehydrogenase (IMPDH) domain (PF00478) along with CBS domain has been classified in this CBSIMPDH subgroup.	 Biochemical character	Os03g0780500	LOC_Os03g56800.2, LOC_Os03g56800.1				GO:0003938 - IMP dehydrogenase activity		
10347	_	OsCBSCBS2	_	cystathionine b-synthase domain containing protein OsCBSCBS2, CBS domain containing protein OsCBSCBS2	_		1	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified.	 Biochemical character	Os01g0921500	LOC_Os01g69240.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process, GO:0009505 - plant-type cell wall		
10348	_	OsCBSCBS3	_	cystathionine b-synthase domain containing protein OsCBSCBS3, CBS domain containing protein OsCBSCBS3	_		4	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified.	 Biochemical character	Os04g0382300	LOC_Os04g31340.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0009505 - plant-type cell wall		
10349	_	OsCBSCBS4, OsCBSCBS4a, OsCBSCBS4b, OsCBSCBS4c, OsCBSCBS4d, OsCBSCBS4e	_	cystathionine b-synthase domain containing protein OsCBSCBS4, CBS domain containing protein OsCBSCBS4	_		4	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified. Putative activator subunit of SNF1-related protein kinase SNF4. AJ575236.	 Biochemical character,  Seed	Os04g0401300	LOC_Os04g32880.5, LOC_Os04g32880.4, LOC_Os04g32880.3, LOC_Os04g32880.2, LOC_Os04g32880.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
10350	_	OsCBSCBS5	_	cystathionine b-synthase domain containing protein OsCBSCBS5, CBS domain containing protein OsCBSCBS5	_		1	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified.		Os01g0920000	LOC_Os01g69090.1				GO:0005773 - vacuole		
10351	_	OsCBSCBSPB1	_	cystathionine b-synthase domain containing protein OsCBSCBSPB1, CBS domain containing protein OsCBSCBSPB1	_		1	These CBSCBSPB proteins contain Phox/Bemp1 (PB1) domain along with the CBS domain.	 Biochemical character	Os01g0923300	LOC_Os01g69900.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
10352	_	OsCBSCBSPB2	_	cystathionine b-synthase domain containing protein OsCBSCBSPB2, CBS domain containing protein OsCBSCBSPB2	_		11	These CBSCBSPB proteins contain Phox/Bemp1 (PB1) domain along with the CBS domain.		Os11g0170300	LOC_Os11g06930.1						
10353	_	OsCBSCBSPB3	_	cystathionine b-synthase domain containing protein OsCBSCBSPB3, CBS domain containing protein OsCBSCBSPB3	_		1	These CBSCBSPB proteins contain Phox/Bemp1 (PB1) domain along with the CBS domain.	 Biochemical character	Os01g0961200	LOC_Os01g73040.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity		
10354	_	OsCBSCBSPB4, CBSCBSPB4	_	cystathionine b-synthase domain containing protein OsCBSCBSPB4, CBS domain containing protein OsCBSCBSPB4	_		12	These CBSCBSPB proteins contain Phox/Bemp1 (PB1) domain along with the CBS domain. BF889471.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0169400	LOC_Os12g07190.1				GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0008152 - metabolic process, GO:0003824 - catalytic activity	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease	
10355	NAC10	ONAC010, ONAC10, OsSTA199	NAC DOMAIN-CONTAINING PROTEIN 10	NAC domain-containing protein 010, Grain Protein Content 2 homolog, GPC-B2 homolog, NAC domain-containing protein 10	NAC DOMAIN-CONTAINING PROTEIN 10		7	a mature anther-preferentially expressed gene. OsNAP-like protein. a candidate gene for GWi7.1. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0566500	LOC_Os07g37920.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000386 - rice ragged stunt virus resistance	PO:0009066 - anther 
10356	HCT1	OsHCT1	HYDROXYCINNAMOYLTRANSFERASE 1	Hydroxycinnamoyltransferase 1, hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 1	HYDROXYCINNAMOYLTRANSFERASE 1		4	GI=115459249	 Biochemical character	Os04g0500700	LOC_Os04g42250.4, LOC_Os04g42250.3, LOC_Os04g42250.2				GO:0009807 - lignan biosynthetic process	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
10357	HCT2	OsHCT2, HCT	HYDROXYCINNAMOYLTRANSFERASE 2	Hydroxycinnamoyltransferase 2, hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 2	HYDROXYCINNAMOYLTRANSFERASE 2		2	GI=115447256. HCT in Kishi-Kaboshi et al. 2018. OsCaM1 target gene.	 Biochemical character	Os02g0611800	LOC_Os02g39850.1				GO:0009807 - lignan biosynthetic process	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
10358	HCT3	OsHCT3, Os-PHT1, OsPHT1, PHT1	HYDROXYCINNAMOYLTRANSFERASE 3	Hydroxycinnamoyltransferase 3, putrescine hy- droxycinnamoyl transferase 1	HYDROXYCINNAMOYLTRANSFERASE 3		6	GI=115466797. KX430016. LOC_Os06g08580.	 Biochemical character	Os06g0184900	LOC_Os06g08580.1						
10359	HCT4	OsHCT4	HYDROXYCINNAMOYLTRANSFERASE 4	Hydroxycinnamoyltransferase 4	HYDROXYCINNAMOYLTRANSFERASE 4		6	GI=115466807	 Biochemical character	Os06g0185500	LOC_Os06g08640.1						
10360	SH1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1	SHATTERING1	YABBY2, YABBY 2, OsYABBY2, Os YABBY2, Shattering1, Shattering 1, FIL homolog 2	PROTEIN YABBY 2		3	Q10FZ7. AB274014. AF098753. homolog of sorghum SH1. YAB family TF gene. LOC_Os03g44710. a shattering-related YABBY transcription factor.	 Seed - Physiological traits - Shattering,  Other	Os03g0650000	LOC_Os03g44710.3, LOC_Os03g44710.2, LOC_Os03g44710.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus		
10361	YAB3	OsYAB3, OsYAB4, TOB3	YABBY3	YABBY 3, OsYABBY3, Os YABBY3, TONGARI-BOUSHI 3, TONGARI-BOUSHI3	PROTEIN YABBY 3		10	Q8L556. AB274015. OsYAB4 in Dai et al. 2007.	 Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os10g0508300	LOC_Os10g36420.1				GO:0005634 - nucleus, GO:0010154 - fruit development, GO:0010158 - abaxial cell fate specification, GO:0046872 - metal ion binding, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0025487 - bract primordium 
10362	YAB4	OsYAB4, OsYAB7, TOB2	YABBY4	YABBY 4, OsYABBY4, Os YABBY4, TONGARI-BOUSHI 2, TONGARI-BOUSHI2	PROTEIN YABBY 4		2	Q6H668. AB274016. OsYAB7 in Dai et al. 2007.	 Reproductive organ - Spikelet, flower, glume, awn,  Other	Os02g0643200	LOC_Os02g42950.2, LOC_Os02g42950.1				GO:0046872 - metal ion binding, GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0025487 - bract primordium 
10363	YAB6	OsYAB6, OsYAB5	YABBY6	YABBY 6, OsYABBY6, Os YABBY6	PROTEIN YABBY 6		12	Q2QM17. AB274018. OsYAB5 in Dai et al. 2007.	 Other	Os12g0621100	LOC_Os12g42610.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding		
10364	YAB7	OsYAB7	YABBY7	YABBY 7, OsYABBY7, Os YABBY7	PROTEIN YABBY 7		7	A2PZN8. AB274019.	 Other	Os07g0571800	LOC_Os07g38410.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding		
10365	_	gh1, GH1, OsCHI, Cfi, CHI	_	gold hull and internode 1, chalcone isomerase, chalcone flavonone isomerase		gh1	3	Q84T92. AF474922. LOC_Os03g60509. lodging resistance.	 Biochemical character,  Vegetative organ - Culm,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os03g0819600	LOC_Os03g60509.2, LOC_Os03g60509.1				GO:0045430 - chalcone isomerase activity, GO:0009809 - lignin biosynthetic process, GO:0009416 - response to light stimulus, GO:0009628 - response to abiotic stimulus, GO:0009813 - flavonoid biosynthetic process	TO:0000534 - culm color, TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content, TO:0000168 - abiotic stress trait, TO:0000396 - grain yield, TO:0000494 - pigment content, TO:0000290 - flavonoid content, TO:0000707 - pericarp color, TO:0000075 - light sensitivity, TO:0000675 - ferulic acid content, TO:0000051 - stem strength	
10366	KAT1	OsKAT1	SHAKER POTASSIUM CHANNEL 1	shaker potassium channel OsKAT1	_		1	rice homolog of Shaker family K1 channel KAT1. Q5JM04.	 Tolerance and resistance - Stress tolerance	Os01g0756700	LOC_Os01g55200.1				GO:0009651 - response to salt stress, GO:0009644 - response to high light intensity, GO:0005249 - voltage-gated potassium channel activity, GO:0005886 - plasma membrane, GO:0007623 - circadian rhythm, GO:0016021 - integral to membrane, GO:0010118 - stomatal movement	TO:0006001 - salt tolerance	
10367	KAT2	OsKAT2	SHAKER POTASSIUM CHANNEL 2	shaker potassium channel OsKAT2	_		1	Q5QNI1. OsKAT2 may be a functional ortholog of AtKAT1.	 Biochemical character	Os01g0210700	LOC_Os01g11250.1				GO:0005249 - voltage-gated potassium channel activity, GO:0005886 - plasma membrane, GO:0010118 - stomatal movement, GO:0009644 - response to high light intensity, GO:0016021 - integral to membrane, GO:0007623 - circadian rhythm		
10368	KAT3	OsKAT3	SHAKER POTASSIUM CHANNEL 3	shaker potassium channel OsKAT3	_		2			Os02g0245800	LOC_Os02g14840.1				GO:0005249 - voltage-gated potassium channel activity, GO:0016021 - integral to membrane, GO:0010118 - stomatal movement, GO:0009644 - response to high light intensity, GO:0007623 - circadian rhythm, GO:0005886 - plasma membrane		
10369	_	OsAKT1, Os-AKT1, AKT1	_	salt-sensitive K1 uptake channel OsAKT1, K+ channel alpha subunit	_	Os-akt1, akt1-1, akt1-2	1	AY065970. P0C550. Q0JKV1. LOC_Os01g45990. GO:0097369: sodium ion import. GO:0010107: potassium ion import.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0648000	LOC_Os01g45990.1				GO:0009414 - response to water deprivation, GO:0009860 - pollen tube growth, GO:0016021 - integral to membrane, GO:0055075 - potassium ion homeostasis, GO:0048767 - root hair elongation, GO:0005249 - voltage-gated potassium channel activity, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0055078 - sodium ion homeostasis	TO:0000514 - potassium uptake, TO:0000608 - sodium content, TO:0000513 - potassium concentration, TO:0000526 - sodium concentration, TO:0000276 - drought tolerance, TO:0000609 - potassium content, TO:0000527 - sodium uptake, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
10370	_	OsAKT2	_	salt-sensitive K1 uptake channel OsAKT2	_		5	Q75HP9.		Os05g0428700	LOC_Os05g35410.1				GO:0005249 - voltage-gated potassium channel activity, GO:0016021 - integral to membrane, GO:0042391 - regulation of membrane potential, GO:0009737 - response to abscisic acid stimulus		
10371	_	OsARP, OsCTP	_	antiporter regulating protein, antiporter-regulating protein, cation transporter, cation transport protein, pistil extensin like protein	_		2	AB112061. AU095352, AU031408.	 Tolerance and resistance - Stress tolerance	Os02g0465900	LOC_Os02g26700.9, LOC_Os02g26700.8, LOC_Os02g26700.7, LOC_Os02g26700.6, LOC_Os02g26700.4, LOC_Os02g26700.3, LOC_Os02g26700.2, LOC_Os02g26700.1				GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion	TO:0000432 - temperature response trait	
10372	MIL1 	MIL1, mil1	MICROSPORELESS 1	MICROSPORELESS1, microsporeless1	CC-TYPE GLUTAREDOXIN	mil1, MIL1	7	a plant-specific CC-type glutaredoxin. JN417767. the ortholog of maize MSCA1.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0151100	LOC_Os07g05630.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0045836 - positive regulation of meiosis		
10374	_	OsAM1, SWI1, Osam1, AM1	_	AMEIOTIC1	_	Osam1, Osam1-1, Osam1-2	3	a homolog of Arabidopsis SWI1 and maize AM1.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0650400	LOC_Os03g44760.5, LOC_Os03g44760.4, LOC_Os03g44760.3, LOC_Os03g44760.2, LOC_Os03g44760.1				GO:0007128 - meiotic prophase I, GO:0007126 - meiosis		
10375	HSP23.7	OsHsp23.7, OsHSP23.7	23.7 KDA HEAT SHOCK PROTEIN	23.7 kDa heat shock protein	23.7 KDA HEAT SHOCK PROTEIN		12		 Tolerance and resistance - Stress tolerance	Os12g0569700	LOC_Os12g38180.1				GO:0005524 - ATP binding		
10376	_	OsCR4	_	CRINKLY4, rice CRINKLY4 orthologue, CR4 ortholog			3	BAB68389, AB057787. Crinkly4 receptor-like kinase. TO:0000816: inflorescence bract anatomy and morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0637800	LOC_Os03g43670.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000240 - sterile lemma length, TO:0006022 - floral organ development trait	
10377	_	OsCRR1	_	CRINKLY4-RELATED protein 1			4	Crinkly4 receptor-like kinase. CAE03130, AL606452.2 (complement of bases 72163-74631).		Os04g0439600	LOC_Os04g35890.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
10378	_	OsCRR2	_	CRINKLY4-RELATED protein 2			8	Crinkly4 receptor-like kinase. BAD09531, AP004584.3 (bases 80615-83125).		Os08g0109800	LOC_Os08g01830.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
10379	_	OsCRR3, CCR3	_	CRINKLY4-RELATED protein 3			5	Crinkly4 receptor-like kinase. AC129720.2 (bases 81114-83507). up-regulated after fertilization (Abiko et al. 2013).		Os05g0127300	LOC_Os05g03620.1				GO:0009790 - embryonic development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
10380	_	OsCRR4	_	CRINKLY4-RELATED protein 4			11	Crinkly4 receptor-like kinase. AC123524.2 (complement of bases 90800-88365).		Os11g0222000	LOC_Os11g11490.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
10382	PGIP6	Ospgip6, pgip6, OsPGIP6	POLYGALACTURONASE-INHIBITING PROTEIN 6	Polygalacturonase-inhibiting protein 6, polygalacturonase inhibiting protein 6	POLYGALACTURONASE-INHIBITING PROTEIN 6		8	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase.	 Biochemical character	Os08g0505900	LOC_Os08g39550.1				GO:0050832 - defense response to fungus, GO:0006952 - defense response		
10383	PGIP7	Ospgip7, pgip7, OsPGIP7	POLYGALACTURONASE-INHIBITING PROTEIN 7	Polygalacturonase-inhibiting protein 7, polygalacturonase inhibiting protein 7	POLYGALACTURONASE-INHIBITING PROTEIN 7		9	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. AC108762. EEE69955.	 Biochemical character	Os09g0491612	LOC_Os09g31450.1				GO:0050832 - defense response to fungus, GO:0006952 - defense response		
10384	_	OsTEF1	_	Transcription Elongation Factor 1	_		2		 Vegetative organ - Culm	Os02g0134300	LOC_Os02g04160.2, LOC_Os02g04160.1						
10385	_	OsRGP1, C1RGP	_	reversibly glycosylated polypeptide 1, class 1 OsRGP, class 1 RGP	_												
10386	_	OsRGP2, C2RGP	_	reversibly glycosylated polypeptide 2, class 2 OsRGP, class 2 RGP	_												
10387	LOX1	OsLOX1	LIPOXYGENASE 1	lipoxygenase 1	LIPOXYGENASE 1		2	FJ660617, FJ660618, AP008208 (5279133-5282623).	 Biochemical character	Os02g0194700 	LOC_Os02g10120.1				GO:0005506 - iron ion binding, GO:0031408 - oxylipin biosynthetic process, GO:0016165 - lipoxygenase activity		
10388	LOX2	OsLOX2	LIPOXYGENASE 2	lipoxygenase 2	LIPOXYGENASE 2		3	LOC_Os03g08220. FJ660619, FJ660620, AP008209 (4168945-4175326). Q8H016.	 Biochemical character	Os03g0179900	LOC_Os03g08220.1				GO:0080086 - stamen filament development, GO:0005506 - iron ion binding, GO:0031408 - oxylipin biosynthetic process, GO:0009555 - pollen development, GO:0009620 - response to fungus, GO:0009901 - anther dehiscence, GO:0016165 - lipoxygenase activity		
10390	SPH	OsLOX6, LOX6	SPLIT-HULL	lipoxygenase 6, split-hull	LIPOXYGENASE 6	sph	4	FJ660627, FJ660628, AP008210 (22279716-22283972). Q7XV13. TO:0000845: collective phyllome structure morphology trait. TO:1000023: lemma morphology trait.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0447100	LOC_Os04g37430.1				GO:0005506 - iron ion binding, GO:0048573 - photoperiodism, flowering, GO:0031408 - oxylipin biosynthetic process, GO:0016165 - lipoxygenase activity	TO:0000576 - stem length, TO:0000592 - 1000-dehulled grain weight, TO:0000137 - days to heading, TO:0005001 - linoleic acid content, TO:0000180 - spikelet fertility, TO:0000731 - lignin content, TO:0000565 - spikelets per panicle length, TO:0005005 - alpha-linolenic acid content	
10391	LOX7	OsLOX7	LIPOXYGENASE 7	lipoxygenase 7	LIPOXYGENASE 7		5	FJ660629, FJ660630, AP008211 (13601100-13607113).	 Biochemical character	Os05g0304600	LOC_Os05g23880.1				GO:0005506 - iron ion binding, GO:0016165 - lipoxygenase activity, GO:0031408 - oxylipin biosynthetic process		
10392	LOX8	OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2	LIPOXYGENASE 8	lipoxygenase 8, lipoxygenase 9	LIPOXYGENASE 8		8	FJ660632 (indica, OsLOX8), FJ660633 (japonica, OsLOX9), AP008214 (25209131-25216838). Q84YK8. OsLOX8 and  OsLOX9 in Marla and Singh 2012. OsLOX2;3 in Kobayashi se al. 2016, Aung et al. 2018. OsLOX2 in Cheng et al. 2019.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0509100 	LOC_Os08g39850.4, LOC_Os08g39850.3, LOC_Os08g39850.2, LOC_Os08g39850.1				GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0009695 - jasmonic acid biosynthetic process, GO:0016165 - lipoxygenase activity, GO:0031408 - oxylipin biosynthetic process, GO:0010106 - cellular response to iron ion starvation	TO:0000224 - iron sensitivity	
10393	LOX10	OsLOX10, OsLOX3, LOX3	LIPOXYGENASE 10	lipoxygenase 10, lipoxygenase 3	LIPOXYGENASE 10		11	FJ660635, FJ660636, AP008217 (20820998-20830730). EU146294, EU700314. OsLOX3 (in Fig1, Fig2, body text) and OsLOX10 (in Table1, Table3) in Marla and Singh 2012.	 Biochemical character	Os11g0575600	LOC_Os11g36719.1				GO:0009816 - defense response to bacterium, incompatible interaction, GO:0009753 - response to jasmonic acid stimulus, GO:0016165 - lipoxygenase activity, GO:0009507 - chloroplast, GO:0048364 - root development, GO:0031408 - oxylipin biosynthetic process, GO:0005506 - iron ion binding, GO:0009737 - response to abscisic acid stimulus		
10394	LOX11	OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2	LIPOXYGENASE 11	lipoxygenase 11, lipoxygenase 12, rice chemically induced cDNA 1, BPH-inducible gene 252, Brown planthopper-inducible gene 252, Lipoxygenase 2.1	LIPOXYGENASE 11		12	LOC_Os12g37260. FJ660638, FJ667775, FJ667776. AP008218 (22888253-22893842). CAC01439. AJ270938. EU513009. OsBphi252 is tightly linked to Bph1.  OsLOX11 (FJ660638, FJ667775) and  OsLOX12 (FJ667776) in Marla and Singh 2012. Lipoxygenase 2.1 in Sudo et al. 2008. OsLOX2.2 in Ma et al. 2018.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os12g0559200 	LOC_Os12g37260.1				GO:0005506 - iron ion binding, GO:0046688 - response to copper ion, GO:0006952 - defense response, GO:0016165 - lipoxygenase activity, GO:0031408 - oxylipin biosynthetic process	TO:0000179 - biotic stress trait, TO:0000261 - insect damage resistance, TO:0000021 - copper sensitivity	
10395	LOX12	OsLOX12	LIPOXYGENASE 12	lipoxygenase 12	LIPOXYGENASE 12		12	FJ667775, AP008218 (22968459-22970460).	 Biochemical character	Os12g0560200	LOC_Os12g37350.1				GO:0016165 - lipoxygenase activity, GO:0005506 - iron ion binding, GO:0031408 - oxylipin biosynthetic process		
10396	DRM2	OsDRM2, osdrm2, DRM2-1	DOMAINS REARRANGED METHYLTRANSFERASE 2	domains rearranged methyltransferase 2, domains rearranged methylase 2	DOMAINS REARRANGED METHYLTRANSFERASE 2	osdrm2, osdrm2-1b, osdrm2-1c, osdrm2-1d, osdrm2-2a, osdrm2-2b, drm2	3	AB524355. CT860708. DNA methyltransferase. LOC_Os03g02010. homologous to animal Dnmt3. DRM2-1 in Li et al. 2017. GO:0080188: RNA-directed DNA methylation.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0110800	LOC_Os03g02010.4				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0006346 - methylation-dependent chromatin silencing, GO:0051567 - histone H3-K9 methylation, GO:0003677 - DNA binding, GO:0006306 - DNA methylation, GO:0008168 - methyltransferase activity, GO:0046686 - response to cadmium ion	TO:0000346 - tiller number, TO:0006001 - salt tolerance, TO:0002616 - flowering time, TO:0000262 - panicle shape, TO:0000657 - spikelet anatomy and morphology trait, TO:0000485 - sterility related trait, TO:0000207 - plant height	
10397	DRM1A	OsDRM1a	DOMAINS REARRANGED METHYLTRANSFERASE 1A	domains rearranged methyltransferase 1a, domains rearranged methylase 1a	DOMAINS REARRANGED METHYLTRANSFERASE 1A		11	AB524356.	 Biochemical character	Os11g0109200/Os11g0109301					GO:0008168 - methyltransferase activity, GO:0003677 - DNA binding, GO:0006306 - DNA methylation		
10398	DRM1B	OsDRM1b	DOMAINS REARRANGED METHYLTRANSFERASE 1B	domains rearranged methyltransferase 1b, domains rearranged methylase 1b	DOMAINS REARRANGED METHYLTRANSFERASE 1B		12		 Biochemical character	Os12g0108900	LOC_Os12g01800.1				GO:0008168 - methyltransferase activity, GO:0006306 - DNA methylation, GO:0003677 - DNA binding		
10399	DRM3	OsDRM3, DRM2-2	DOMAINS REARRANGED METHYLTRANSFERASE 3	domains rearranged methyltransferase 3, domains rearranged methylase 3	DOMAINS REARRANGED METHYLTRANSFERASE 3		5	LOC_Os05g04330. DRM2-2 in Li et al. 2017.	 Biochemical character	Os05g0133900	LOC_Os05g04330.2, LOC_Os05g04330.1				GO:0008168 - methyltransferase activity		
10400	CMT1	OsCMT1, OsCMT3b	CHROMOMETHYLTRANSFERASE 1	chromomethyltransferase 1, chromomethylase 3b	CHROMOMETHYLTRANSFERASE 1	oscmt3b	3	GO:0090116 C-5 methylation of cytosine. LOC_Os03g12570. AB360584. OsCMT3b in Cheng et al. 2015. OsCMT3b might not play a major role in maintaining CHG methylation (Cheng et al. 2015).	 Biochemical character	Os03g0226800/Os03g0226901					GO:0004674 - protein serine/threonine kinase activity, GO:0003677 - DNA binding, GO:0003886 - DNA (cytosine-5-)-methyltransferase activity, GO:0005524 - ATP binding, GO:0008168 - methyltransferase activity, GO:0006306 - DNA methylation, GO:0005634 - nucleus		
10401	CMT2	OsCMT2, OsCMT3a, CMT3a	CHROMOMETHYLTRANSFERASE 2	chromomethyltransferase 2, chromomethylase 3a	CHROMOMETHYLTRANSFERASE 2	oscmt3a, oscmt3a-1, oscmt3a-2	10	GO:0090116 C-5 methylation of cytosine. OsCMT3a in Cheng et al. 2015, Wang et al. 2018. LOC_Os10g01570. AB360583. a functional orthologue of ZMET2 and CMT3.	 Biochemical character	Os10g0104900	LOC_Os10g01570.1				GO:0032502 - developmental process, GO:0003677 - DNA binding, GO:0006342 - chromatin silencing, GO:0009294 - DNA mediated transformation, GO:0003886 - DNA (cytosine-5-)-methyltransferase activity, GO:0070895 - negative regulation of transposon integration, GO:0032776 - DNA methylation on cytosine, GO:0006306 - DNA methylation, GO:0051567 - histone H3-K9 methylation, GO:0010425 - DNA methylation on cytosine within a CNG sequence, GO:0010069 - zygote asymmetric cytokinesis in the embryo sac, GO:0005634 - nucleus	TO:0000357 - growth and development trait	
10402	CMT3	OsCMT3, CMT3-1	CHROMOMETHYLTRANSFERASE 3	chromomethyltransferase 3	CHROMOMETHYLTRANSFERASE 3		5	GO:0090116 C-5 methylation of cytosine. LOC_Os05g13790. CMT3-1 and CMT3 in Li et al. 2017.	 Biochemical character	Os05g0224900	LOC_Os05g13790.1, LOC_Os05g13780.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003886 - DNA (cytosine-5-)-methyltransferase activity		
10403	DNMT2	OsDNMT2, OsDnmt2	DNA METHYLTRANSFERASE 2	DNA methyltransferase 2	DNA METHYLTRANSFERASE 2		1		 Biochemical character	Os01g0612000	LOC_Os01g42630.3, LOC_Os01g42630.2, LOC_Os01g42630.1				GO:0006306 - DNA methylation, GO:0003677 - DNA binding		
10404	SHAT1	SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5	SHATTERING ABORTION 1	SHATTERING ABORTION1, shattering abortion 1, APETALA2/ethylene-responsive element binding protein 43, APETALA2-5	_	shat1	4	FO082280. an APETALA2 transcription factor. AP2 family TF gene. LOC_Os04g55560. AP2-5 in Dai et al. 2016.	 Seed - Physiological traits - Shattering	Os04g0649100	LOC_Os04g55560.4, LOC_Os04g55560.3, LOC_Os04g55560.2				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10405	_	OsCam1-3, OsCaM1-3, CAM1	_	Calmodulin 1-3, calmodulin 1	_		1	Q0JNS6. CAM1 in Zhang et al. 2013.	 Biochemical character	Os01g0267900	LOC_Os01g16240.1				GO:0005886 - plasma membrane, GO:0019722 - calcium-mediated signaling, GO:0009846 - pollen germination, GO:0005509 - calcium ion binding, GO:0005516 - calmodulin binding, GO:0010099 - regulation of photomorphogenesis, GO:0005773 - vacuole		
10406	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6	18.0-KD CLASS I HEAT SHOCK PROTEIN	18.0 kDa class I heat shock protein, 18.0 kDa heat shock protein, 18.0-kD class I heat shock protein, multiple stress responsive gene 3, small heat shock protein 20	18.0-KD CLASS I HEAT SHOCK PROTEIN 		3	LOC_Os03g16030. small heat shock protein. Class-I Low-Molecular-Mass Heat-Shock Protein. U83670. X75616. Q84Q72. FJ383169. OsSHSP1 in Ham et al. 2013. OsHSP20 in Li et al. 2015. OsHSP18.6 in Qiu et al. 2015.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0267000	LOC_Os03g16030.1				GO:0010288 - response to lead ion, GO:0046688 - response to copper ion, GO:0010045 - response to nickel ion, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0032025 - response to cobalt ion, GO:0045471 - response to ethanol, GO:0009615 - response to virus, GO:0005737 - cytoplasm, GO:0046685 - response to arsenic, GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion	TO:0000259 - heat tolerance, TO:0000148 - viral disease resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000413 - rice tungro virus resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000016 - cobalt sensitivity, TO:0000080 - micronutrient sensitivity, TO:0000303 - cold tolerance, TO:0000021 - copper sensitivity, TO:0000276 - drought tolerance	
10407	HSP18.0-CIII	OsHSP18.0-CIII	18.0-KD CLASS III HEAT SHOCK PROTEIN	18.0 kDa class III heat shock protein, 18.0-kD class III heat shock protein	18.0-KD CLASS III HEAT SHOCK PROTEIN 		2	Q6K7E9.	 Tolerance and resistance - Stress tolerance	Os02g0782500	LOC_Os02g54140.1				GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0006457 - protein folding, GO:0009644 - response to high light intensity		
10408	HSP17.4-CI	OsHSP17.4-CI	17.4-KD CLASS I HEAT SHOCK PROTEIN	17.4-kD class I heat shock protein	17.4-KD CLASS I HEAT SHOCK PROTEIN				 Tolerance and resistance - Stress tolerance						GO:0009408 - response to heat		
10409	ERF92	OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78	ETHYLENE RESPONSE FACTOR 92	ethylene response factor 922, ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 922, ethylene response factor 92, APETALA2/ethylene-responsive element binding protein 78, Ethylene responsive factor 922	ETHYLENE RESPONSE FACTOR 92		1	LOC_Os01g54890. AP2 transcription factor. OsERF922 in Wang et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0752500	LOC_Os01g54890.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0009635 - response to herbicide	TO:0006001 - salt tolerance, TO:0000058 - herbicide sensitivity	
10411	_	OsRTH1, RTH1	_	Reversion-To-ethylene Sensitivity1 homologue 1	_		1	LOC_Os01g51430. Green-ripe (GR) related protein.		Os01g0711600	LOC_Os01g51430.1				GO:0048830 - adventitious root development, GO:0010150 - leaf senescence, GO:0048366 - leaf development, GO:0009873 - ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity, TO:0000249 - leaf senescence	
10412	_	OsRTH2, RTH2	_	Reversion-To-ethylene Sensitivity1 homologue 2	_		5	LOC_Os05g46240. Green-ripe (GR) related protein. AAV59409.		Os05g0539800	LOC_Os05g46240.4, LOC_Os05g46240.3, LOC_Os05g46240.2, LOC_Os05g46240.1				GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0009723 - response to ethylene stimulus, GO:0010105 - negative regulation of ethylene mediated signaling pathway		
10413	_	OsRTH3, RTH3	_	Reversion-To-ethylene Sensitivity1 homologue 3	_		3	LOC_Os03g58520. Green-ripe (GR) related protein. AAO37528.		Os03g0799500	LOC_Os03g58520.1						
10414	_	OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL6	_	CHD-related gene 729, Chromatin Remodeling 4, crown rootless6, crown rootless 6		chr729, Oschr4	7	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein. LOC_Os07g31450.		Os07g0497100	LOC_Os07g31450.1				GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0008270 - zinc ion binding, GO:0004386 - helicase activity		
10415	_	CHR705, chr705	_	CHD-related gene 705			7	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein		Os07g0660200	LOC_Os07g46590.1				GO:0003676 - nucleic acid binding, GO:0004386 - helicase activity, GO:0005524 - ATP binding		
10416	_	CHR702, chr702	_	CHD-related gene 702			6	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein		Os06g0183800	LOC_Os06g08480.1						
10417	_	OsHFP	_	hemopexin fold protein			4	CAE03710. an anther-specific protein. JX233809.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Coloration - Chlorophyll	Os04g0213100	LOC_Os04g13540.1						
10418	_	OsSub42, SUB42, OsSP2, OS-MSP	_	Serine protease 2, Subtilisin 42, SUBTILISIN 42	_		4	subtilisin-like serine protease. panicle-specific gene. AY683198. AY644644. Similar to tomato meiotic serine proteinase. AU065677, AU030354. LOC_Os04g45960. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0543700	LOC_Os04g45960.1				GO:0006508 - proteolysis, GO:0043086 - negative regulation of catalytic activity, GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall, GO:0016020 - membrane	TO:0000432 - temperature response trait, TO:0000723 - microsporocyte development trait	
10419	_	XYH	_		_		5	early seed-specific gene.		Os05g0298700	LOC_Os05g23350.1				GO:0043169 - cation binding, GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
10420	NOMT	OsNOMT, COMTL3, OsCOMTL3	NARINGENIN 7-O-METHYLTRANSFERASE	naringenin 7-O-methyltransferase, CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 3	NARINGENIN 7-O-METHYLTRANSFERASE		12	AB692949. Q0IP69. LOC_Os12g13800. metabolite: Sakuranetin.	 Biochemical character,  Tolerance and resistance	Os12g0240900	LOC_Os12g13810.1, LOC_Os12g13800.1				GO:0033799 - myricetin 3'-O-methyltransferase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response, GO:0009809 - lignin biosynthetic process, GO:0030755 - quercetin 3-O-methyltransferase activity, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0051555 - flavonol biosynthetic process, GO:0005634 - nucleus, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000172 - jasmonic acid sensitivity, TO:0000236 - crop damage resistance, TO:0000179 - biotic stress trait	
10421	COM1	OsCOM1	COMPLETION OF MEIOSIS 1	Completion of Meiosis 1, completion of meiotic recombination 1, COM1/SAE2 homolog	_	Oscom1, Oscom1-1, Oscom1-2, Oscom1-3, Oscom1-4, com1	6	the homolog of COM1/SAE2 in S. cerevisiae.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os06g0613400	LOC_Os06g41050.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0000706 - meiotic DNA double-strand break processing		
10422	RACK1	RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A	RECEPTOR FOR ACTIVATED C-KINASE 1	q group of receptor for activated C-kinase, GTP-binding regulatory protein beta chain, receptor for activated C kinase 1, Receptor for Activated C-kinase 1	RECEPTOR FOR ACTIVATED C-KINASE 1		1	D38231. P49027. D22687, D15480. WD repeat containing receptor, RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex. LOC_Os01g49290.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0686800	LOC_Os01g49290.1				GO:0050832 - defense response to fungus, GO:0060267 - positive regulation of respiratory burst, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0004871 - signal transducer activity, GO:0048364 - root development, GO:0046686 - response to cadmium ion, GO:0051776 - detection of redox state, GO:0009507 - chloroplast, GO:0009738 - abscisic acid mediated signaling, GO:0070301 - cellular response to hydrogen peroxide, GO:0009873 - ethylene mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009648 - photoperiodism, GO:0007623 - circadian rhythm, GO:0009845 - seed germination, GO:0005730 - nucleolus, GO:0006952 - defense response, GO:0022626 - cytosolic ribosome, GO:0048367 - shoot development, GO:0009651 - response to salt stress	TO:0000112 - disease resistance, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0002667 - abscisic acid content, TO:0000173 - ethylene sensitivity, TO:0000229 - photoperiod sensitivity	
10423	SIK1	OsSIK1, OsER2, ER2, OsERL, ERL	STRESS INDUCED PROTEIN KINASE 1	ERECTA 2, ER-LIKE			6	LOC_Os06g03970. GQ423058, AY332474. Receptor-like kinase (RLK). a rice homolog of Arabidopsis ERCTA (ER). PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os06g0130100	LOC_Os06g03970.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009029 - stamen , PO:0009051 - spikelet 
10424	PHO1;1	OsPHO1;1	PHOSPHATE TRANSPORTER 1;1			Ospho1;1, Ospho1;1-1, Ospho1;1-2	1	Pi homeostasis. TO:0020089: iron content. LOC_Os01g02000.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0110100	LOC_Os01g02000.1				GO:0010106 - cellular response to iron ion starvation, GO:0034756 - regulation of iron ion transport, GO:0034224 - cellular response to zinc ion starvation, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	
10425	PHO1;2	OsPHO1;2	PHOSPHATE TRANSPORTER 1;2	PHOSPHATE1;2			2	Root-to-shoot Pi transfer. Q6K991.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0809800	LOC_Os02g56510.1				GO:0016021 - integral to membrane, GO:0006817 - phosphate transport, GO:0005802 - trans-Golgi network, GO:0046685 - response to arsenic, GO:0005886 - plasma membrane		
10426	PHO1;3	OsPHO1;3, OsPHT1	PHOSPHATE TRANSPORTER 1;3	Phosphate transporter 1			6	Pi homeostasis. LOC_Os06g29790.	 Biochemical character	Os06g0493600	LOC_Os06g29790.1						
10427	PHO1;3 CIS-NAT	OsPHO1;3 cis-NAT	PHOSPHATE TRANSPORTER 1;3 CIS-NATURAL ANTISENSE TRANSCRIPT				6	Pi homeostasis	 Biochemical character	Os06g0493700							
10428	PHO1;2 CIS-NAT	OsPHO1;2 cis-NAT, cis-NAT PHO1;2	PHOSPHATE TRANSPORTER 1;2 CIS-NATURAL ANTISENSE TRANSCRIPT				2	Pi homeostasis	 Biochemical character	Os02g0809700							
10429	PHO1;1 CIS-NAT	OsPHO1;1 cis-NAT	PHOSPHATE TRANSPORTER 1;1 CIS-NATURAL ANTISENSE TRANSCRIPT				1	Pi homeostasis	 Biochemical character	Os01g0110050							
10430	CAD1	OsCAD1	CINNAMYL ALCOHOL DEHYDROGENASE 1	Cinnamyl alcohol dehydrogenase 1	CINNAMYL-ALCOHOL DEHYDROGENASE 1		10	LOC_Os10g11810. Q8H859. GO:0052747:sinapyl alcohol dehydrogenase activity. no detectable catalytic activity. lacks the GxxxxP motif for NADPH binding.	 Biochemical character	Os10g0194200	LOC_Os10g11810.3, LOC_Os10g11810.2, LOC_Os10g11810.1				GO:0055114 - oxidation reduction, GO:0044036 - cell wall macromolecule metabolic process, GO:0009809 - lignin biosynthetic process, GO:0009808 - lignin metabolic process, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0045551 - cinnamyl-alcohol dehydrogenase activity		
10432	CAD3	OsCAD3	CINNAMYL ALCOHOL DEHYDROGENASE 3	Cinnamyl alcohol dehydrogenase 3	CINNAMYL-ALCOHOL DEHYDROGENASE 3		10	LOC_Os10g29470. Q337Y2. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os10g0430200	LOC_Os10g29470.1				GO:0009808 - lignin metabolic process, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0044036 - cell wall macromolecule metabolic process, GO:0009809 - lignin biosynthetic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0055114 - oxidation reduction, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0009617 - response to bacterium, GO:0048046 - apoplast, GO:0009626 - plant-type hypersensitive response		
10433	CAD4	OsCAD4	CINNAMYL ALCOHOL DEHYDROGENASE 4	Cinnamyl alcohol dehydrogenase 4	CINNAMYL-ALCOHOL DEHYDROGENASE 4		11	LOC_Os11g40690. Q2R114. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os11g0622800	LOC_Os11g40690.1				GO:0009809 - lignin biosynthetic process, GO:0044036 - cell wall macromolecule metabolic process, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0048037 - cofactor binding, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0009808 - lignin metabolic process, GO:0055114 - oxidation reduction		
10434	CAD5	OsCAD5	CINNAMYL ALCOHOL DEHYDROGENASE 5	Cinnamyl alcohol dehydrogenase 5	CINNAMYL-ALCOHOL DEHYDROGENASE 5		8	LOC_Os08g16910. Q0J6T3. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os08g0270400	LOC_Os08g16910.1				GO:0008270 - zinc ion binding, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0009626 - plant-type hypersensitive response, GO:0009617 - response to bacterium, GO:0009809 - lignin biosynthetic process, GO:0055114 - oxidation reduction, GO:0044036 - cell wall macromolecule metabolic process, GO:0048046 - apoplast, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0000166 - nucleotide binding, GO:0009808 - lignin metabolic process		
10435	CAD6	OsCAD6	CINNAMYL ALCOHOL DEHYDROGENASE 6	Cinnamyl alcohol dehydrogenase 6	CINNAMYL-ALCOHOL DEHYDROGENASE 6		4	LOC_Os04g15920. Q7XWU3. GO:0052747:sinapyl alcohol dehydrogenase activity. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0229100	LOC_Os04g15920.1				GO:0009808 - lignin metabolic process, GO:0009411 - response to UV, GO:0009809 - lignin biosynthetic process, GO:0000166 - nucleotide binding, GO:0044036 - cell wall macromolecule metabolic process, GO:0008270 - zinc ion binding, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0055114 - oxidation reduction, GO:0009698 - phenylpropanoid metabolic process, GO:0010266 - response to vitamin B1, GO:0042742 - defense response to bacterium	TO:0000160 - UV light sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0009047 - stem , PO:0020104 - leaf sheath 
10436	CAD8A	OsCAD8A	CINNAMYL ALCOHOL DEHYDROGENASE 8A	Cinnamyl alcohol dehydrogenase 8A	CINNAMYL-ALCOHOL DEHYDROGENASE 8A		9	LOC_Os09g23530. Q6ERX1. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os09g0399800	LOC_Os09g23530.1				GO:0044036 - cell wall macromolecule metabolic process, GO:0048046 - apoplast, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0055114 - oxidation reduction, GO:0009809 - lignin biosynthetic process, GO:0009808 - lignin metabolic process, GO:0009617 - response to bacterium, GO:0009626 - plant-type hypersensitive response, GO:0045551 - cinnamyl-alcohol dehydrogenase activity		
10437	CAD8B	OsCAD8B	CINNAMYL ALCOHOL DEHYDROGENASE 8B	Cinnamyl alcohol dehydrogenase 8B	CINNAMYL-ALCOHOL DEHYDROGENASE 8B		9	LOC_Os09g23540. Q6ERW9. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os09g0400000	LOC_Os09g23540.1				GO:0008270 - zinc ion binding, GO:0009808 - lignin metabolic process, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0009617 - response to bacterium, GO:0055114 - oxidation reduction, GO:0009809 - lignin biosynthetic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0000166 - nucleotide binding, GO:0044036 - cell wall macromolecule metabolic process, GO:0048046 - apoplast, GO:0009626 - plant-type hypersensitive response		
10438	CAD8C	OsCAD8C, CAD8c	CINNAMYL ALCOHOL DEHYDROGENASE 8C	Cinnamyl alcohol dehydrogenase 8C	CINNAMYL-ALCOHOL DEHYDROGENASE 8C		9	LOC_Os09g23550. Q6ERW7. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os09g0400300	LOC_Os09g23550.2, LOC_Os09g23550.1				GO:0009809 - lignin biosynthetic process, GO:0009808 - lignin metabolic process, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0048046 - apoplast, GO:0055114 - oxidation reduction, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0008270 - zinc ion binding, GO:0009617 - response to bacterium, GO:0044036 - cell wall macromolecule metabolic process, GO:0009626 - plant-type hypersensitive response, GO:0000166 - nucleotide binding	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
10439	CAD8D	OsCAD8D	CINNAMYL ALCOHOL DEHYDROGENASE 8D	Cinnamyl alcohol dehydrogenase 8D	CINNAMYL-ALCOHOL DEHYDROGENASE 8D		9	LOC_Os09g23560. Q6ERW5. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os09g0400400	LOC_Os09g23560.1				GO:0009808 - lignin metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0055114 - oxidation reduction, GO:0009809 - lignin biosynthetic process, GO:0009626 - plant-type hypersensitive response, GO:0009617 - response to bacterium, GO:0048046 - apoplast, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0044036 - cell wall macromolecule metabolic process		
10440	CAD9	OsCAD9	CINNAMYL ALCOHOL DEHYDROGENASE 9	Cinnamyl alcohol dehydrogenase 9	CINNAMYL-ALCOHOL DEHYDROGENASE 9		3	LOC_Os03g12270. Q10PS6. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os03g0223200	LOC_Os03g12270.1				GO:0009617 - response to bacterium, GO:0009626 - plant-type hypersensitive response, GO:0055114 - oxidation reduction, GO:0009808 - lignin metabolic process, GO:0000166 - nucleotide binding, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0048046 - apoplast, GO:0008270 - zinc ion binding, GO:0009809 - lignin biosynthetic process, GO:0044036 - cell wall macromolecule metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity		
10441	COMTL1	OsCOMTL1	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 1		CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 1		12	LOC_Os12g09770	 Biochemical character	Os12g0199500	LOC_Os12g09770.1				GO:0008171 - O-methyltransferase activity		
10442	COMTL2	OsCOMTL2	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 2		CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 2		4	LOC_Os04g01470	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0104900	LOC_Os04g01470.1				GO:0008171 - O-methyltransferase activity, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
10444	COMTL4	OsCOMTL4, COMT2	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 4	caffeic acid O-methyltransferase 2	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 4		2	LOC_Os02g57760. COMT2 in Koshiba et al. 2013. metabolite: Trigonelline.	 Biochemical character	Os02g0823400	LOC_Os02g57760.1				GO:0009807 - lignan biosynthetic process, GO:0008171 - O-methyltransferase activity	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
10445	COMTL5	OsCOMTL5	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 5		CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 5		4	LOC_Os04g09604. an indole glucosinolate O- methyltransferase.	 Biochemical character	Os04g0175600	LOC_Os04g09604.1				GO:0046983 - protein dimerization activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0008171 - O-methyltransferase activity, GO:0019438 - aromatic compound biosynthetic process		
10446	COMTL6	OsCOMTL6	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 6		CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 6		4	LOC_Os04g09654	 Biochemical character	Os04g0175900	LOC_Os04g09654.2, LOC_Os04g09654.1				GO:0008171 - O-methyltransferase activity		
10447	PIM	Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km	PYRICULARIA ORYZAE RESISTANCE M	Pyricularia oryzae resistance m, Magnaporthe grisea resistance-m, Blast resistance m			11	resistant to several races of Pyricularia grisea. [RGN12:19].  Original line is Minehikari (Japonica).  Pi-m was renamed Pi-km as a Pi-k allele (Kiyosawa 1978). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000504 - leaf temperature	PO:0009025 - vascular leaf 
10448	LMS	OsLMS	LESION MIMIC AND SENESCENCE			lms	2	LMS gene encodes a protein with a catalytic CTD phosphatase domain and two double stranded RNA binding motifs (dsRBM).	 Tolerance and resistance - Lesion mimic	Os02g0639000	LOC_Os02g42600.1						
10449	-	OsCPL1, CPL1	-	C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 1			4	putative Arabidopsis FIERY2/CPL1 homolog.		Os04g0529500	LOC_Os04g44710.2, LOC_Os04g44710.1						
10450	-	OsCPL2, CPL2	-	C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 2			1	putative Arabidopsis CPL2 homolog.		Os01g0857000	LOC_Os01g63820.2, LOC_Os01g63820.1						
10451	HSF26	OsHsf26	HEAT STRESS TRANSCRIPTION FACTOR 26	Heat stress transcription factor 26	HEAT STRESS TRANSCRIPTION FACTOR 26		6	Os06g22610.	 Tolerance and resistance - Stress tolerance								
10452	IAA23	OsIAA23	_	Aux/IAA protein 23, Auxin-responsive Aux/IAA gene family member 23		Osiaa23, Osiaa23-2, Osiaa23-3, Osiaa23-R5	6	Q69VE0. LOC_Os06g39590. Osiaa23-R5 (one of the six intragenic suppressors of an auxin insensitive mutant, Osiaa23)	 Tolerance and resistance - Stress tolerance	Os06g0597000	LOC_Os06g39590.2, LOC_Os06g39590.1				GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0048364 - root development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000656 - root development trait	PO:0007520 - root development stage 
10453	IAA20	OsIAA20	_	Aux/IAA protein 20			6	LOC_Os06g07040. Q5VRR0. BAF18829.	 Tolerance and resistance - Stress tolerance	Os06g0166500	LOC_Os06g07040.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009629 - response to gravity, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity, TO:0002693 - gravity response trait, TO:0000173 - ethylene sensitivity	
10454	CRL1L1	OsCrll1, OsLBD3-1, LBD3-1	_	Crl1-like 1, lateral organ boundaries domain 3-1			3	AB200235.		Os03g0149000	LOC_Os03g05500.1						
10455	CRL1L2	OsCrll2, Crll2	_	Crl1-like 2			10	AB200236.		Os10g0162600	LOC_Os10g07510.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent		
10456	CRL1L3	OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2	_	Crl1-like 3, indeterminate gametophyte1, lateral organ boundaries domain 1-9, ASYMMETRIC LEAVES2, ASYMMETRIC LEAVES 2			1	AB200237. Q8LQH4. rice orthologue of maize IG1. a LBD-like gene. TO:0000869: glume anatomy and morphology trait. LOC_Os01g66590.	 Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0889400	LOC_Os01g66590.3, LOC_Os01g66590.2, LOC_Os01g66590.1				GO:0048437 - floral organ development, GO:0005634 - nucleus, GO:0009561 - megagametogenesis, GO:0009553 - embryo sac development, GO:0007275 - multicellular organismal development	TO:0006038 - floral organ number, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000206 - leaf angle, TO:0006022 - floral organ development trait	PO:0004001 - bulliform cell , PO:0007621 - megagametophyte development stage , PO:0009038 - palea , PO:0009039 - glume , PO:0025279 - megagametophyte 
10458	IAA3	OsIAA3	_	Aux/IAA protein 3			1		 Seed - Morphological traits - Grain shape	Os01g0231000 	LOC_Os01g13030.1, LOC_Os01g13030.2				GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway	TO:0000734 - grain length, TO:0000163 - auxin sensitivity	
10460	_	OsEDS1, EDS1	_	enhanced disease susceptibility 1, ENHANCED DISEASE SUSCEPTIBILITY1, Arabidopsis EDS1 homolog			9		 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os09g0392100	LOC_Os09g22450.1				GO:0002213 - defense response to insect, GO:0004806 - triacylglycerol lipase activity, GO:0006629 - lipid metabolic process, GO:0002237 - response to molecule of bacterial origin	TO:0000424 - brown planthopper resistance, TO:0000315 - bacterial disease resistance	
10461	_	PAD4, OsPAD4	_	phytoalexin deficient 4			11	CX118864. a rice ortholog of Arabidopsis phytoalexin deficient 4 (AtPAD4). TO:0020093: nitrogen content.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os11g0195500	LOC_Os11g09010.3, LOC_Os11g09010.2, LOC_Os11g09010.1				GO:0002213 - defense response to insect, GO:0004806 - triacylglycerol lipase activity, GO:0006629 - lipid metabolic process, GO:0009693 - ethylene biosynthetic process, GO:0010618 - aerenchyma formation, GO:0005886 - plasma membrane, GO:0009611 - response to wounding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042742 - defense response to bacterium	TO:0000424 - brown planthopper resistance, TO:0000175 - bacterial blight disease resistance, TO:0002668 - jasmonic acid content, TO:0002670 - momilactone A content, TO:0000172 - jasmonic acid sensitivity	
10462	_	ICS1, OsICS1, OsICS, ICS	_	isochorismate synthase 1, ISOCHORISMATE SYNTHASE1			9		 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os09g0361500	LOC_Os09g19734.2, LOC_Os09g19734.1				GO:0002213 - defense response to insect, GO:0042372 - phylloquinone biosynthetic process, GO:0009627 - systemic acquired resistance, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009536 - plastid, GO:0008909 - isochorismate synthase activity, GO:0051607 - defense response to virus, GO:0031348 - negative regulation of defense response, GO:0010118 - stomatal movement, GO:0009697 - salicylic acid biosynthetic process, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000424 - brown planthopper resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000148 - viral disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000476 - growth hormone content	
10463	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6	PHENYLALANINE AMMONIA-LYASE 1	phenylalanine ammonia-lyase 1, phenylalanine ammonia lyase	PHENYLALANINE AMMONIA-LYASE 1	ospal4	2	Q0DZE0. X87946. A2X7F7. D41931. KF556681. OsPAL, OsPAL2 in Rakwal et al. 2009. OsPAL2 in Hayashiet al. 2014. OsPAL4 in Tonnessen et al. 2014, Wang et al. 2017, Zhou et al. 2018, Filipe et al. 2018, Bai et al. 2019. OsPAL6 in Yang et al. 2016.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os02g0627100	LOC_Os02g41680.1	GR:0060593			GO:0002213 - defense response to insect, GO:0009800 - cinnamic acid biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0002238 - response to molecule of fungal origin, GO:0010332 - response to gamma radiation, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0046688 - response to copper ion, GO:0002237 - response to molecule of bacterial origin, GO:0005737 - cytoplasm, GO:0006559 - L-phenylalanine catabolic process, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0009635 - response to herbicide	TO:0000424 - brown planthopper resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000173 - ethylene sensitivity, TO:0000674 - phytochemical compound content, TO:0000468 - leaf blast disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000021 - copper sensitivity, TO:0000664 - fungal blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000315 - bacterial disease resistance, TO:0000058 - herbicide sensitivity	
10464	PLT1	OsPLT1, AP2/EREBP#044, AP2/EREBP44	PLETHORA 1	Plethora 1, APETALA2/ethylene-responsive element binding protein 44	PLETHORA 1		4	LOC_Os04g55970.	 Other	Os04g0653600	LOC_Os04g55970.2, LOC_Os04g55970.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10465	PLT2	OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6	PLETHORA 2	Plethora 2, APETALA2/ethylene-responsive element binding protein 60, Hairy Leaf 6	PLETHORA 2		6	HQ858843. AP2-EREBP transcription factor. LOC_Os06g44750. GO:2000039: regulation of trichome morphogenesis. TO:0000748: leaf morphology trait.	 Vegetative organ - Leaf,  Other	Os06g0657500	LOC_Os06g44750.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0010090 - trichome morphogenesis		
10466	PLT3	OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2	PLETHORA 3	Plethora 3, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 18, BABY BOOM2, BABY BOOM 2	PLETHORA 3	bbm2	2		 Seed - Morphological traits - Embryo,  Other	Os02g0614300	LOC_Os02g40070.1				GO:0009790 - embryonic development, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent	TO:0000345 - seed viability	
10467	PLT4	OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4	PLETHORA 4	Plethora 4, APETALA2/ethylene-responsive element binding protein 37, BABY BOOM4, BABY BOOM 4	PLETHORA  4		4		 Other	Os04g0504500	LOC_Os04g42570.1						PO:0000084 - plant sperm cell 
10468	PLT5	OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1	PLETHORA 5	Plethora 5, APETALA2/ethylene-responsive element binding protein 5, BABY BOOM3, BABY BOOM 3	PLETHORA 5	bbm3	1	BBM3 in Khanday et al. 2019. GO:1990110: callus formation. ortholog of Arabidopsis BBM.	 Seed - Morphological traits - Embryo,  Other	Os01g0899800	LOC_Os01g67410.1				GO:0009790 - embryonic development, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent	TO:0000428 - callus induction, TO:0000345 - seed viability	
10469	PLT6	OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1	PLETHORA 6	Plethora 6, APETALA2/ethylene-responsive element binding protein 118, BABY BOOM1, BABY BOOM 1	PLETHORA 6	bbm1	11		 Seed - Morphological traits - Embryo,  Other	Os11g0295900	LOC_Os11g19060.1				GO:0010262 - somatic embryogenesis, GO:0009566 - fertilization, GO:0009790 - embryonic development, GO:0019954 - asexual reproduction, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent	TO:0000345 - seed viability	PO:0000084 - plant sperm cell 
10470	PLT7	OsPLT7, AP2/EREBP#088, AP2/EREBP88	PLETHORA 7	Plethora 7, APETALA2/ethylene-responsive element binding protein 88	PLETHORA 7		3	LOC_Os03g56050.	 Other	Os03g0770700	LOC_Os03g56050.1						
10471	PLT8	OsPLT8, CRL5, AP2/EREBP141, AP2/EREBP#141	PLETHORA 8	Plethora 8, CROWN ROOTLESS5, APETALA2/ethylene-responsive element binding protein 141	PLETHORA 8	crl5	7	LOC_Os07g03250.	 Vegetative organ - Root,  Other	Os07g0124700	LOC_Os07g03250.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10472	PLT10	OsPLT10, AP2/EREBP26, AP2/EREBP#026	PLETHORA 10	Plethora 10, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 26	PLETHORA 10		3	LOC_Os03g07940.	 Other	Os03g0176300	LOC_Os03g07940.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10473	PLT9	OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT	PLETHORA 9	Plethora 9, APETALA2/ethylene-responsive element binding protein 137	PLETHORA 9		3	a rice ANT homolog.	 Other	Os03g0232200	LOC_Os03g12950.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10474	_	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10	_	root-specific Oryza sativa PR10, root specific rice PR10, root-specific OsPR10a, Root specific pathogenesis-related protein 10			12	LOC_Os12g36830. AB127580. GQ487631 (promoter), GQ487632 (promoter), GQ487633. GO:0080163: regulation of protein serine/threonine phosphatase activity. OsPR10a in Rawat et al. 2013 and Li et al. 2017. OsPR10 in Kaur et al. 2017, Lin et al. 2018. GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os12g0555000 	LOC_Os12g36830.1				GO:0050832 - defense response to fungus, GO:0004872 - receptor activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0052543 - callose deposition in cell wall, GO:0010427 - abscisic acid binding, GO:0046688 - response to copper ion, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0043086 - negative regulation of catalytic activity, GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0006952 - defense response, GO:0009738 - abscisic acid mediated signaling, GO:0010431 - seed maturation, GO:0009409 - response to cold	TO:0002661 - seed maturation, TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000261 - insect damage resistance	PO:0007632 - seed maturation stage 
10475	CRK1	OsCRK1, OsCBK, CBK	CDPK-RELATED KINASE 1	CDPK-related kinase 1, Ca2+/calmodulin (CaM)-binding protein kinase, calmodulin-binding kinase	CDPK-RELATED KINASE 1		3	AF368282. Q10KY3. AC125784.	 Biochemical character	Os03g0366200	LOC_Os03g25070.1				GO:0004683 - calmodulin-dependent protein kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
10476	CRK2	OsCRK2	CDPK-RELATED KINASE 2	CDPK-related kinase 2	CDPK-RELATED KINASE 2		6	AP004678.	 Biochemical character								
10477	CRK3	OsCRK3	CDPK-RELATED KINASE 3	CDPK-related kinase 3	CDPK-RELATED KINASE 3		7	AP004309, AP004380.	 Biochemical character								
10478	CRK4	OsCRK4	CDPK-RELATED KINASE 4	CDPK-related kinase 4	CDPK-RELATED KINASE 4		7	AP005292, AP004671.	 Biochemical character								
10479	CRK5	OsCRK5	CDPK-RELATED KINASE 5	CDPK-related kinase 5	CDPK-RELATED KINASE 5		10	AE017111, AC087192.	 Biochemical character								
10480	_	OsPEPRK1	_	phosphoenolpyruvate (PEP) carboxylase kinase-related kinase 1			6	AP002838, AP001168.	 Biochemical character								
10481	_	OsPEPRK2	_	phosphoenolpyruvate (PEP) carboxylase kinase-related kinase 2			9	AP005676.	 Biochemical character	Os09g0466900	LOC_Os09g29170.4, LOC_Os09g29170.3, LOC_Os09g29170.2, LOC_Os09g29170.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
10482	RBOHI	OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF	RESPIRATORY BURST OXIDASE HOMOLOG I	respiratory burst oxidase homolog I	RESPIRATORY BURST OXIDASE HOMOLOG I		11	ROS-producing NADPH oxidase. ABA94089. OsRbohF in Li et al. 2011. LOC_Os11g33120.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os11g0537400	LOC_Os11g33120.3, LOC_Os11g33120.2, LOC_Os11g33120.1				GO:0043069 - negative regulation of programmed cell death, GO:0033198 - response to ATP, GO:0022626 - cytosolic ribosome, GO:0016174 - NAD(P)H oxidase activity, GO:0010053 - root epidermal cell differentiation, GO:0009413 - response to flooding, GO:0009408 - response to heat, GO:0009060 - aerobic respiration, GO:0005887 - integral to plasma membrane, GO:0005773 - vacuole, GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding, GO:0050832 - defense response to fungus	TO:0000524 - submergence tolerance	
10483	RBOHC	rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5	RESPIRATORY BURST OXIDASE HOMOLOG C	Respiratory Burst Oxidase Homolog C, NADPH oxidase 5	RESPIRATORY BURST OXIDASE HOMOLOG C		5	OsrbohD in Yoshie et al. 2005. OsRboh5 in Zhang et al. 2014. LOC_Os05g45210.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0528000	LOC_Os05g45210.3, LOC_Os05g45210.2, LOC_Os05g45210.1				GO:0043069 - negative regulation of programmed cell death, GO:0010119 - regulation of stomatal movement, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0002679 - respiratory burst during defense response, GO:0005887 - integral to plasma membrane, GO:0052542 - callose deposition during defense response, GO:0009413 - response to flooding, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding	TO:0000615 - abscisic acid sensitivity, TO:0000524 - submergence tolerance	
10484	RBOHA	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2	RESPIRATORY BURST OXIDASE HOMOLOG A	Respiratory Burst Oxidase Homolog A, respiratory burst oxidase homologue A, NADPH oxidase 2	RESPIRATORY BURST OXIDASE HOMOLOG A	osrbohA	1	NM_191558(Record removed). X93301. AF015302. D40466, D39082. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0734200	LOC_Os01g53294.1				GO:0002679 - respiratory burst during defense response, GO:0005887 - integral to plasma membrane, GO:0009723 - response to ethylene stimulus, GO:0010119 - regulation of stomatal movement, GO:0016491 - oxidoreductase activity, GO:0043069 - negative regulation of programmed cell death, GO:0009414 - response to water deprivation, GO:0050793 - regulation of developmental process, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0009413 - response to flooding, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0052542 - callose deposition during defense response, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000457 - total biomass yield, TO:0000430 - germination rate, TO:0000172 - jasmonic acid sensitivity, TO:0000639 - seed fertility, TO:0000524 - submergence tolerance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity	
10485	RBOHD	rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4	RESPIRATORY BURST OXIDASE HOMOLOG D	Respiratory Burst Oxidase Homolog D, NADPH oxidase 4	RESPIRATORY BURST OXIDASE HOMOLOG D		5	LOC_Os05g38980.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0465800	LOC_Os05g38980.1				GO:0004601 - peroxidase activity, GO:0009413 - response to flooding, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane	TO:0000524 - submergence tolerance	
10486	RBOHE	rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3	RESPIRATORY BURST OXIDASE HOMOLOG E	Respiratory Burst Oxidase Homolog E, NADPH oxidase 3	RESPIRATORY BURST OXIDASE HOMOLOG E		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0835500	LOC_Os01g61880.2, LOC_Os01g61880.1				GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0016021 - integral to membrane, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0009413 - response to flooding	TO:0000615 - abscisic acid sensitivity, TO:0000524 - submergence tolerance	
10487	RBOHF	RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE	RESPIRATORY BURST OXIDASE HOMOLOG F	Respiratory Burst Oxidase Homolog F, Respiratory Burst Oxidase Homolog E, NADPH oxidase 6	RESPIRATORY BURST OXIDASE HOMOLOG F		8	XM_482730 (Obsolete data corresponding to Os08g0453700). OsrbohE in Yoshie et al. 2005, Jiang et al. 2017. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0453700 	LOC_Os08g35210.1				GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0009413 - response to flooding, GO:0009737 - response to abscisic acid stimulus	TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity	
10488	RBOHG	rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB	RESPIRATORY BURST OXIDASE HOMOLOG G	Respiratory Burst Oxidase Homolog G, NADPH oxidase 7	RESPIRATORY BURST OXIDASE HOMOLOG G		9	OsrbohB in Yoshie et al. 2005. LOC_Os09g26660.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0438000	LOC_Os09g26660.1				GO:0005509 - calcium ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0009413 - response to flooding, GO:0016021 - integral to membrane, GO:0004601 - peroxidase activity, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor	TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity	
10489	RBOHH	rbohH, OsrbohH, Os rbohH, OsNox9, OsRboh9, Os-RbohH, RbohH	RESPIRATORY BURST OXIDASE HOMOLOG H	Respiratory Burst Oxidase Homolog H, NADPH oxidase 9	RESPIRATORY BURST OXIDASE HOMOLOG H		12	ABA99453. OsRboh9 in Zhang et al. 2014. LOC_Os12g35610. GO:0036293: response to decreased oxygen levels. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0541300	LOC_Os12g35610.3, LOC_Os12g35610.2, LOC_Os12g35610.1				GO:0009408 - response to heat, GO:0009845 - seed germination, GO:0009413 - response to flooding, GO:0070482 - response to oxygen levels, GO:0050832 - defense response to fungus, GO:0016174 - NAD(P)H oxidase activity, GO:0010618 - aerenchyma formation, GO:0005886 - plasma membrane, GO:0002238 - response to molecule of fungal origin, GO:0009873 - ethylene mediated signaling pathway, GO:0016021 - integral to membrane, GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding	TO:0000015 - oxygen sensitivity, TO:0000173 - ethylene sensitivity, TO:0000439 - fungal disease resistance, TO:0000524 - submergence tolerance	
10490	RAC2	OsRAC2, OsRac2, Os Rac2	RAC/ROP-TYPE GTPASE 2	small GTP-binding protein 2, Rac-like GTP-binding protein 2	RAC/ROP-TYPE GTPASE 2												
10491	RAC3	OsRAC3, OsRac3, Os Rac3	RAC/ROP-TYPE GTPASE 3	small GTP-binding protein 3, Rac-like GTP-binding protein 3	RAC/ROP-TYPE GTPASE 3												
10492	RAC4	OsRAC4, OsRac4, Os Rac4	RAC/ROP-TYPE GTPASE 4	small GTP-binding protein 4, Rac-like GTP-binding protein 4	RAC/ROP-TYPE GTPASE 4												
10493	RAC5	OsRAC5, OsRac5, Os Rac5	RAC/ROP-TYPE GTPASE 5	small GTP-binding protein 5, Rac-like GTP-binding protein 5	RAC/ROP-TYPE GTPASE 5												
10494	RAC6	OsRAC6, OsRac6, Os Rac6	RAC/ROP-TYPE GTPASE 6	small GTP-binding protein 6, Rac-like GTP-binding protein 6	RAC/ROP-TYPE GTPASE 6												
10495	RAC7	OsRAC7, OsRac7, Os Rac7	RAC/ROP-TYPE GTPASE 7	small GTP-binding protein 7, Rac-like GTP-binding protein 7	RAC/ROP-TYPE GTPASE 7												
10496	CML10	OsCML10	CALMODULIN-LIKE PROTEIN 10	calmodulin-like protein 10	CALMODULIN-LIKE PROTEIN 10		1	Q8RZB5.		Os01g0949500	LOC_Os01g72100.1				GO:0005509 - calcium ion binding		
10497	CML11	OsCML11	CALMODULIN-LIKE PROTEIN 11	calmodulin-like protein 11	CALMODULIN-LIKE PROTEIN 11		1	Q9AWK2.	 Tolerance and resistance - Stress tolerance	Os01g0505600	LOC_Os01g32120.1				GO:0005509 - calcium ion binding, GO:0000325 - plant-type vacuole, GO:0043269 - regulation of ion transport		
10498	CML12	OsCML12	CALMODULIN-LIKE PROTEIN 12	calmodulin-like protein 12	CALMODULIN-LIKE PROTEIN 12		1	Q5ZD81.		Os01g0604500	LOC_Os01g41990.1				GO:0005509 - calcium ion binding		
10499	CML13	OsCML13	CALMODULIN-LIKE PROTEIN 13	calmodulin-like protein 13	CALMODULIN-LIKE PROTEIN 13		7	Q7F0J0. LOC_Os07g42660.		Os07g0618800 					GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0006281 - DNA repair		
10500	CML14	OsCML14	CALMODULIN-LIKE PROTEIN 14	calmodulin-like protein 14	CALMODULIN-LIKE PROTEIN 14		5	Q6L5F4.		Os05g0577500	LOC_Os05g50180.1				GO:0005509 - calcium ion binding		
10501	CML15	OsCML15	CALMODULIN-LIKE PROTEIN 15	calmodulin-like protein 15	CALMODULIN-LIKE PROTEIN 15		5	Q6L4D4.		Os05g0380900	LOC_Os05g31620.1				GO:0005509 - calcium ion binding		
10502	CML16	OsCML16	CALMODULIN-LIKE PROTEIN 16	calmodulin-like protein 16	CALMODULIN-LIKE PROTEIN 16		1	Q5ZCK5. LOC_Os01g04330.	 Tolerance and resistance - Stress tolerance	Os01g0135700	LOC_Os01g04330.1				GO:0005509 - calcium ion binding, GO:0009628 - response to abiotic stimulus, GO:0019722 - calcium-mediated signaling	TO:0000168 - abiotic stress trait	
10503	CML17	OsCML17	CALMODULIN-LIKE PROTEIN 17	calmodulin-like protein 17	CALMODULIN-LIKE PROTEIN 17		2	Q0DZP5.		Os02g0606600	LOC_Os02g39384.1				GO:0005509 - calcium ion binding		
10504	CML18	OsCML18	CALMODULIN-LIKE PROTEIN 18	calmodulin-like protein 18	CALMODULIN-LIKE PROTEIN 18		5	Q0DJV6.		Os05g0223000	LOC_Os05g13580.1				GO:0005509 - calcium ion binding		
10505	CML2	OsCML2	CALMODULIN-LIKE PROTEIN 2	calmodulin-like protein 2	CALMODULIN-LIKE PROTEIN 2		11	Q0IUU4.		Os11g0134400	LOC_Os11g03980.1				GO:0005509 - calcium ion binding, GO:0016020 - membrane		
10506	CML21	OsCML21	CALMODULIN-LIKE PROTEIN 21	calmodulin-like protein 21	CALMODULIN-LIKE PROTEIN 21		5	Q0DJ94.		Os05g0312600	LOC_Os05g24780.1				GO:0005509 - calcium ion binding		
10507	CML22	OsCML22	CALMODULIN-LIKE PROTEIN 22	calmodulin-like protein 22	CALMODULIN-LIKE PROTEIN 22		4	Q0JC44.		Os04g0492800	LOC_Os04g41540.1				GO:0005509 - calcium ion binding		
10508	CML24	OsCML24	CALMODULIN-LIKE PROTEIN 24	calmodulin-like protein 24	CALMODULIN-LIKE PROTEIN 24		7	LOC_Os07g48340. Q7XHW4. XB21 interacting protein (XB21IP). Calmodulin-related calcium sensor protein.		Os07g0681400	LOC_Os07g48340.2, LOC_Os07g48340.1				GO:0005509 - calcium ion binding		
10509	CML27	OsCML27	CALMODULIN-LIKE PROTEIN 27	calmodulin-like protein 27	CALMODULIN-LIKE PROTEIN 27		3	Q10LX4.		Os03g0331700	LOC_Os03g21380.2, LOC_Os03g21380.1				GO:0005509 - calcium ion binding		
10510	CML20	OsCML20	CALMODULIN-LIKE PROTEIN 20	calmodulin-like protein 20	CALMODULIN-LIKE PROTEIN 20		2	Q6Z2J1.		Os02g0733500	LOC_Os02g50060.1				GO:0005509 - calcium ion binding		
10511	CML28	OsCML28	CALMODULIN-LIKE PROTEIN 28	calmodulin-like protein 28	CALMODULIN-LIKE PROTEIN 28		12	Q2QVI1. LOC_Os12g12730.		Os12g0228800	LOC_Os12g12730.1				GO:0005509 - calcium ion binding		
10512	CML29	OsCML29	CALMODULIN-LIKE PROTEIN 29	calmodulin-like protein 29	CALMODULIN-LIKE PROTEIN 29		6	Q5Z676.		Os06g0691600	LOC_Os06g47640.1				GO:0005509 - calcium ion binding		
10513	CML3	OsCML3, OsSTA271, OsCML3m, OsCML3s	CALMODULIN-LIKE PROTEIN 3	calmodulin-like protein 3, CaM-Like 3	CALMODULIN-LIKE PROTEIN 3		12	Q0IQB6. LOC_Os12g03816. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0132300	LOC_Os12g03816.1				GO:0005509 - calcium ion binding, GO:0019722 - calcium-mediated signaling, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0005634 - nucleus		PO:0009066 - anther 
10514	CML30	OsCML30	CALMODULIN-LIKE PROTEIN 30	calmodulin-like protein 30	CALMODULIN-LIKE PROTEIN 30		6	Q5SND2.		Os06g0172200	LOC_Os06g07560.1				GO:0005509 - calcium ion binding		
10515	CML31	OsCML31, OsMSR2, MSR2	CALMODULIN-LIKE PROTEIN 31	calmodulin-like protein 31, multi-stress-responsive gene 2	CALMODULIN-LIKE PROTEIN 31		1	Q8RYK0. LOC_Os01g72530.	 Tolerance and resistance - Stress tolerance	Os01g0955100	LOC_Os01g72530.1				GO:0019722 - calcium-mediated signaling, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005509 - calcium ion binding	TO:0000394 - drought related trait, TO:0006001 - salt tolerance, TO:0000432 - temperature response trait	
10516	CML32	OsCML32	CALMODULIN-LIKE PROTEIN 32	calmodulin-like protein 32	CALMODULIN-LIKE PROTEIN 32		8	Q84UL5.		Os08g0144100	LOC_Os08g04890.1				GO:0005509 - calcium ion binding		
10517	CML5	OsCML5	CALMODULIN-LIKE PROTEIN 5	calmodulin-like protein 5	CALMODULIN-LIKE PROTEIN 5		12	Q948R0. AU085804.	 Tolerance and resistance - Stress tolerance	Os12g0603800	LOC_Os12g41110.1				GO:0005634 - nucleus, GO:0019722 - calcium-mediated signaling, GO:0005829 - cytosol, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0005509 - calcium ion binding		
10518	CML6	OsCML6	CALMODULIN-LIKE PROTEIN 6	calmodulin-like protein 6	CALMODULIN-LIKE PROTEIN 6		11	Q2R1Z5.		Os11g0586200	LOC_Os11g37550.1				GO:0005509 - calcium ion binding		
10519	CML7	OsCML7, OsSTKC	CALMODULIN-LIKE PROTEIN 7	calmodulin-like protein 7, Ser/Thr kinase/calmodulin	CALMODULIN-LIKE PROTEIN 7		8	Q84VG0. AY224521.		Os08g0117400	LOC_Os08g02420.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding, GO:0009409 - response to cold		
10520	CML8	OsCML8	CALMODULIN-LIKE PROTEIN 8	calmodulin-like protein 8	CALMODULIN-LIKE PROTEIN 8		10	Q338P8.	 Tolerance and resistance - Stress tolerance	Os10g0389000	LOC_Os10g25010.1				GO:0005509 - calcium ion binding		
10521	CML9	OsCML9	CALMODULIN-LIKE PROTEIN 9	calmodulin-like protein 9	CALMODULIN-LIKE PROTEIN 9		5	Q6F334.		Os05g0491000	LOC_Os05g41200.1				GO:0005509 - calcium ion binding		
10522	IAA11	OsIAA11	_	Aux/IAA protein 11		Osiaa11	3	Q75GK0. BAF12627. rice homolog  of Arabidopsis AtIAA14. GO:1990110: callus formation.	 Vegetative organ - Root,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0633500	LOC_Os03g43400.1				GO:0009629 - response to gravity, GO:0001708 - cell fate specification, GO:0009630 - gravitropism, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0010102 - lateral root morphogenesis	TO:0000163 - auxin sensitivity, TO:0000511 - phosphorus uptake, TO:0000428 - callus induction, TO:0002693 - gravity response trait	
10523	IAA31	OsIAA3, OsIAA31	_	Aux/IAA protein 3, Aux/IAA protein 31		Osiaa3	12	P0C133. LOC_Os12g40900.	 Other	Os12g0601400	LOC_Os12g40900.1				GO:0006351 - transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent	TO:0002672 - auxin content, TO:0000163 - auxin sensitivity	
10524	IAA12	OsIAA12	_	Aux/IAA protein 12			3	LOC_Os03g43410. Q75GK1. TO: 0000829: leaf lamina morphology trait.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0633800	LOC_Os03g43410.1				GO:0051510 - regulation of unidimensional cell growth, GO:0009629 - response to gravity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway	TO:0002688 - leaf lamina joint bending, TO:0000206 - leaf angle, TO:0002693 - gravity response trait	
10525	PIDL	OsPIDL	PINOID-LIKE	OsPINOID-like, OsPIDlike			1	Q94E49. OsPID homolog.		Os01g0174700	LOC_Os01g07940.1				GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0006468 - protein amino acid phosphorylation, GO:0007275 - multicellular organismal development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009734 - auxin mediated signaling pathway, GO:0048825 - cotyledon development		
10526	_	CFL1	_	curly flag leaf1		cfl1-1	2	Rice CFL1 negatively regulate cuticle development.	 Vegetative organ - Leaf	Os02g0516400	LOC_Os02g31140.1				GO:0042335 - cuticle development	TO:0002681 - leaf curling	
10527	_	OsVPE2, VPE2, OsaLeg1, aLeg1	_	vacuolar processing enzyme 2, legumain 1	_		1	BAF05258. a vegetative-related protease.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0559600	LOC_Os01g37910.3, LOC_Os01g37910.2, LOC_Os01g37910.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0000323 - lytic vacuole, GO:0006508 - proteolysis	TO:0000249 - leaf senescence, TO:0000164 - stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000429 - salt sensitivity	
10528	_	OsVPE3, VPE3, REP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2	_	vacuolar processing enzyme 3, cysteine endopeptidase REP-2, legumain 2	_		2	BAC41387. AB081464. asparaginyl endopeptidase. a seed-related legumain.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0644000	LOC_Os02g43010.2, LOC_Os02g43010.1				GO:0006508 - proteolysis, GO:0004197 - cysteine-type endopeptidase activity	TO:0000429 - salt sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000164 - stress trait	
10529	_	OsVPE4, VPE4, OsaLeg4, Leg4	_	vacuolar processing enzyme 4, legumain 4	_		5	BAF18418. a vegetative-related protease.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0593900	LOC_Os05g51570.1				GO:0006508 - proteolysis, GO:0004197 - cysteine-type endopeptidase activity, GO:0000323 - lytic vacuole	TO:0000164 - stress trait, TO:0000429 - salt sensitivity, TO:0000615 - abscisic acid sensitivity	
10530	_	OsGLU3, OsGH9A2, GLU3, GH9A2	_	endo-1, 4-b-D-glucanase 3, glycoside hydrolase OsGH9A2, glycoside hydrolase 9A2	_		4	a putative membrane-bound endo-1,4-b-glucanase. Q7XUK4. GO:0071555 cellular cell wall organization.	 Biochemical character	Os04g0497200	LOC_Os04g41970.1				GO:0008810 - cellulase activity, GO:0016021 - integral to membrane, GO:0030245 - cellulose catabolic process		
10531	ERF4	OsERF#004, OsERF004, OsERF4, AP2/EREBP#159, AP2/EREBP159	ETHYLENE RESPONSE FACTOR 4	ethylene response factor 4, APETALA2/ethylene-responsive element binding protein 159	ETHYLENE RESPONSE FACTOR 4		12		 Other	Os12g0582900	LOC_Os12g39330.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10532	ERF5	OsERF#005, OsERF005, OsERF5, AP2/EREBP#072, AP2/EREBP72	ETHYLENE RESPONSE FACTOR 5	ethylene response factor 5, APETALA2/ethylene-responsive element binding protein 72	ETHYLENE RESPONSE FACTOR 5		7		 Other	Os07g0204000	LOC_Os07g10410.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10533	ERF6	OsERF#006, OsERF006, OsERF6, AP2/EREBP#075, AP2/EREBP75	ETHYLENE RESPONSE FACTOR 6	ethylene response factor 6, APETALA2/ethylene-responsive element binding protein 75	ETHYLENE RESPONSE FACTOR 6		7		 Other	Os07g0575000	LOC_Os07g38750.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10534	ERF7	OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142	ETHYLENE RESPONSE FACTOR 7	ethylene response factor 7, APETALA2/ethylene-responsive element binding protein 142	ETHYLENE RESPONSE FACTOR 7		6		 Other	Os06g0166400	LOC_Os06g07030.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10535	ERF9	OsERF#009, OsERF009, OsERF9, AP2/EREBP#135, AP2/EREBP135	ETHYLENE RESPONSE FACTOR 9	ethylene response factor 9, APETALA2/ethylene-responsive element binding protein 135	ETHYLENE RESPONSE FACTOR 9		3		 Other	Os03g0263000	LOC_Os03g15660.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10536	ERF10	OsERF#010, OsERF010, OsERF10	ETHYLENE RESPONSE FACTOR 10	ethylene response factor 10	ETHYLENE RESPONSE FACTOR 10		6	LOC_Os06g09690 (Obsolete Locus).	 Other								
10538	ERF14	OsERF#014, OsERF014, OsERF14, AP2/EREBP#103, AP2/EREBP103	ETHYLENE RESPONSE FACTOR 14	ethylene response factor 14, APETALA2/ethylene-responsive element binding protein 103	ETHYLENE RESPONSE FACTOR 14		6	LOC_Os06g09810 (Os06g0198400 in PMID:22807623).	 Other		LOC_Os06g09810				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10539	ERF15	OsERF#015, OsERF015, OsERF15, AP2/EREBP#102, AP2/EREBP102	ETHYLENE RESPONSE FACTOR 15	ethylene response factor 15, APETALA2/ethylene-responsive element binding protein 102	ETHYLENE RESPONSE FACTOR 15		6	LOC_Os06g09790 (Os06g0198200 in PMID:22807623).	 Other		LOC_Os06g09790				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10540	ERF16	OsERF#016, OsERF016, OsERF16, AP2/EREBP#055, AP2/EREBP55	ETHYLENE RESPONSE FACTOR 16	ethylene response factor 16, APETALA2/ethylene-responsive element binding protein 55	ETHYLENE RESPONSE FACTOR 16		6	LOC_Os06g09760 (Os06g0197900 in PMID:22807623).	 Other		LOC_Os06g09760				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10541	ERF17	OsERF#017, OsERF017, OsERF17, AP2/EREBP#091, AP2/EREBP91	ETHYLENE RESPONSE FACTOR 17	ethylene response factor 17, APETALA2/ethylene-responsive element binding protein 91	ETHYLENE RESPONSE FACTOR 17		1		 Other	Os01g0885900	LOC_Os01g66270.1						
10542	ERF18	OsERF#018, OsERF018, OsERF18, AP2/EREBP#115, AP2/EREBP115	ETHYLENE RESPONSE FACTOR 18	ethylene response factor 18, APETALA2/ethylene-responsive element binding protein 115	ETHYLENE RESPONSE FACTOR 18		10		 Other	Os10g0523900	LOC_Os10g38000.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10543	ERF19	OsERF#019, OsERF019, OsERF19, AP2/EREBP#157, AP2/EREBP157	ETHYLENE RESPONSE FACTOR 19	ethylene response factor 19, APETALA2/ethylene-responsive element binding protein 157	ETHYLENE RESPONSE FACTOR 19		11		 Other	Os11g0242300	LOC_Os11g13840.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
10544	ERF20	OsERF#020, OsERF020, OsERF20, AP2/EREBP#126, AP2/EREBP126, OsDREB1G	ETHYLENE RESPONSE FACTOR 20	ethylene response factor 20, APETALA2/ethylene-responsive element binding protein 126	ETHYLENE RESPONSE FACTOR 20		2	OsDREB1G  in Mao et al. 2019.	 Other	Os02g0676800	LOC_Os02g45420.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
10545	ERF21	OsERF#021, OsERF021, OsERF21, AP2/EREBP#140, AP2/EREBP140	ETHYLENE RESPONSE FACTOR 21	ethylene response factor 21, APETALA2/ethylene-responsive element binding protein 140	ETHYLENE RESPONSE FACTOR 21		2		 Other	Os02g0558700	LOC_Os02g35240.1						
10546	ERF22	OsERF#022, OsERF022, OsERF22, AP2/EREBP#087, AP2/EREBP87	ETHYLENE RESPONSE FACTOR 22	ethylene response factor 22, APETALA2/ethylene-responsive element binding protein 87	ETHYLENE RESPONSE FACTOR 22		4	LOC_Os04g36640 (Os04g0443800 (Obsolete data)) in Rashid et al. 2012.	 Other						GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10547	ERF23	OsERF#023, OsERF023, OsERF23, AP2/EREBP#144, AP2/EREBP144	ETHYLENE RESPONSE FACTOR 23	ethylene response factor 23, APETALA2/ethylene-responsive element binding protein 144	ETHYLENE RESPONSE FACTOR 23		4		 Other	Os04g0572200	LOC_Os04g48330.1				GO:0003700 - transcription factor activity		
10549	DREB1F	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F	ethylene response factor 27, APETALA2/ethylene-responsive element binding protein 81, Dehydration-responsive element-binding protein 1F	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F		1	Q8S9Z5. AY785897. AY345234. A2WZI4.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0968800	LOC_Os01g73770.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
10550	ERF32	OsERF#032, OsERF032, OsERF32, AP2/EREBP#021, AP2/EREBP21	ETHYLENE RESPONSE FACTOR 32	ethylene response factor 32, APETALA2/ethylene-responsive element binding protein 21	ETHYLENE RESPONSE FACTOR 32		2		 Other	Os02g0656600	LOC_Os02g43940.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10551	ERF33	OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2	ETHYLENE RESPONSE FACTOR 33	ethylene response factor 33, APETALA2/ethylene-responsive element binding protein 40	ETHYLENE RESPONSE FACTOR 33		4	AY196209. HQ858809. AP2-EREBP transcription factor.	 Other	Os04g0549700	LOC_Os04g46400.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10552	ERF34	OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42	ETHYLENE RESPONSE FACTOR 34	ethylene response factor 34, APETALA2/ethylene-responsive element binding protein 42	ETHYLENE RESPONSE FACTOR 34		4	LOC_Os04g46440.	 Other	Os04g0550200	LOC_Os04g46440.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10553	ERF35	OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211	ETHYLENE RESPONSE FACTOR 35	"ethylene response factor 35, APETALA2/ethylene-responsive element binding protein 148, AP2/EREBP-type
transcription factor OsAP211"	ETHYLENE RESPONSE FACTOR 35		2	AY346094.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0657000	LOC_Os02g43970.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000303 - cold tolerance	
10554	ERF36	OsERF#036, OsERF036, OsERF36, AP2/EREBP#007, AP2/EREBP7	ETHYLENE RESPONSE FACTOR 36	ethylene response factor 36, APETALA2/ethylene-responsive element binding protein 7	ETHYLENE RESPONSE FACTOR 36		10		 Other	Os10g0560700	LOC_Os10g41130.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10555	ERF37	OsERF#037, OsERF037, OsERF37, AP2/EREBP#041, AP2/EREBP41	ETHYLENE RESPONSE FACTOR 37	ethylene response factor 37, APETALA2/ethylene-responsive element binding protein 41	ETHYLENE RESPONSE FACTOR 37		4		 Other	Os04g0549800	LOC_Os04g46410.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10556	ERF38	OsERF#038, OsERF038, OsERF38, AP2/EREBP#082, AP2/EREBP82, OsDREB4-1	ETHYLENE RESPONSE FACTOR 38	ethylene response factor 38, APETALA2/ethylene-responsive element binding protein 82	ETHYLENE RESPONSE FACTOR 38		2	AY258281.	 Other	Os02g0231000	LOC_Os02g13710.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10557	ERF39	OsERF#039, OsERF039, OsERF39, AP2/EREBP#002, AP2/EREBP2	ETHYLENE RESPONSE FACTOR 39	ethylene response factor 39, APETALA2/ethylene-responsive element binding protein 2	ETHYLENE RESPONSE FACTOR 39		1		 Other	Os01g0200600	LOC_Os01g10370.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10558	ERF41	OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E	ETHYLENE RESPONSE FACTOR 41	ethylene response factor 41, APETALA2/ethylene-responsive element binding protein 25, dehydration-responsive element-binding protein 2E	ETHYLENE RESPONSE FACTOR 41		3	Q10R18.	 Tolerance and resistance - Stress tolerance	Os03g0174400	LOC_Os03g07830.1				GO:0006950 - response to stress, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10559	ERF42	OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A	ETHYLENE RESPONSE FACTOR 42	ethylene response factor 42, APETALA2/ethylene-responsive element binding protein 48, dehydration-responsive element-binding protein 2B	ETHYLENE RESPONSE FACTOR 42		5	Q5W6R4. OsDREB2A in Rao et al. 2015. OsDREB2B in Chen et al. 2008, Moin et al. 2017.	 Tolerance and resistance - Stress tolerance	Os05g0346200	LOC_Os05g27930.4, LOC_Os05g27930.3, LOC_Os05g27930.2, LOC_Os05g27930.1				GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
10560	ERF43	OsERF#043, OsERF043, OsERF43, AP2/EREBP#095, AP2/EREBP95	ETHYLENE RESPONSE FACTOR 43	ethylene response factor 43, APETALA2/ethylene-responsive element binding protein 95	ETHYLENE RESPONSE FACTOR 43		5	Q65WX1.	 Tolerance and resistance - Stress tolerance	Os05g0473300	LOC_Os05g39590.3, LOC_Os05g39590.2, LOC_Os05g39590.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006950 - response to stress		
10561	ERF44	OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124	ETHYLENE RESPONSE FACTOR 44	ethylene response factor 44, APETALA2/ethylene-responsive element binding protein 112, dehydration-responsive element-binding protein 2C, endosperm-specific gene 124	ETHYLENE RESPONSE FACTOR 44		8	Q84ZA1. LOC_Os08g45110.	 Tolerance and resistance - Stress tolerance	Os08g0565200	LOC_Os08g45110.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006950 - response to stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10562	ERF45	OsERF#045, OsERF045, OsERF45, AP2/EREBP#119, AP2/EREBP119	ETHYLENE RESPONSE FACTOR 45	ethylene response factor 45, APETALA2/ethylene-responsive element binding protein 119	ETHYLENE RESPONSE FACTOR 45		4		 Other	Os04g0529100	LOC_Os04g44670.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10563	ERF46	OsERF#046, OsERF046, OsERF46	ETHYLENE RESPONSE FACTOR 46	ethylene response factor 46	ETHYLENE RESPONSE FACTOR 46		2		 Other	Os02g0638400	LOC_Os02g42580.1						
10564	ERF47	OsERF#047, OsERF047, OsERF47, AP2/EREBP#121, AP2/EREBP121	ETHYLENE RESPONSE FACTOR 47	ethylene response factor 47, APETALA2/ethylene-responsive element binding protein 121	ETHYLENE RESPONSE FACTOR 47		3		 Other	Os03g0191900	LOC_Os03g09170.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10565	ERF48	OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170	ETHYLENE RESPONSE FACTOR 48	ethylene response factor 48, APETALA2/ethylene-responsive element binding protein 170	ETHYLENE RESPONSE FACTOR 48		8		 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other	Os08g0408500	LOC_Os08g31580.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000456 - spikelet number, TO:0000656 - root development trait, TO:0000152 - panicle number, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000227 - root length, TO:0000115 - root mass density, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000396 - grain yield	PO:0007520 - root development stage 
10566	ERF49	OsERF#049, OsERF049, OsERF49, AP2/EREBP#132, AP2/EREBP132	ETHYLENE RESPONSE FACTOR 49	ethylene response factor 49, APETALA2/ethylene-responsive element binding protein 132	ETHYLENE RESPONSE FACTOR 49		2		 Other	Os02g0752800	LOC_Os02g51670.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10567	ERF50	OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6	ETHYLENE RESPONSE FACTOR 50	ethylene response factor 50, APETALA2/ethylene-responsive element binding protein 113, dehydration-responsive element-binding protein 6	ETHYLENE RESPONSE FACTOR 50		9	LOC_Os09g20350 (Os09g0369000 and Os09g0369050 by RAP DB ID converter). HQ858824. AP2-EREBP transcription factor. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0369000	LOC_Os09g20350.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0006351 - transcription, DNA-dependent	TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity	
10568	ERF52	OsERF#052, OsERF052, OsERF52, AP2/EREBP#053, AP2/EREBP53	ETHYLENE RESPONSE FACTOR 52	ethylene response factor 52, APETALA2/ethylene-responsive element binding protein 53	ETHYLENE RESPONSE FACTOR 52		5		 Other	Os05g0572000	LOC_Os05g49700.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10569	ERF53	OsERF#053, OsERF053, OsERF53, AP2/EREBP#134, AP2/EREBP134	ETHYLENE RESPONSE FACTOR 53	ethylene response factor 53, APETALA2/ethylene-responsive element binding protein 134	ETHYLENE RESPONSE FACTOR 53		1	LOC_Os01g12440.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0224100	LOC_Os01g12440.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0010332 - response to gamma radiation, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10570	ERF54	OsERF#054, OsERF054, OsERF54, AP2/EREBP#162, AP2/EREBP162	ETHYLENE RESPONSE FACTOR 54	ethylene response factor 54, APETALA2/ethylene-responsive element binding protein 162	ETHYLENE RESPONSE FACTOR 54		1		 Other	Os01g0657400	LOC_Os01g46870.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10571	ERF55	OsERF#055, OsERF055, OsERF55, AP2/EREBP#146, AP2/EREBP146	ETHYLENE RESPONSE FACTOR 55	ethylene response factor 55, APETALA2/ethylene-responsive element binding protein 146	ETHYLENE RESPONSE FACTOR 55		6		 Other	Os06g0160500	LOC_Os06g06540.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10572	ERF56	OsERF#056, OsERF056, OsERF56, AP2/EREBP#164, AP2/EREBP164	ETHYLENE RESPONSE FACTOR 56	ethylene response factor 56, APETALA2/ethylene-responsive element binding protein 164	ETHYLENE RESPONSE FACTOR 56		5		 Other	Os05g0316800	LOC_Os05g25260.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10573	ERF57	OsERF#057, OsERF057, OsERF57, AP2/EREBP#145, AP2/EREBP145	ETHYLENE RESPONSE FACTOR 57	ethylene response factor 57, APETALA2/ethylene-responsive element binding protein 145	ETHYLENE RESPONSE FACTOR 57		7		 Other	Os07g0227600	LOC_Os07g12510.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10574	ERF58	OsERF#058, OsERF058, OsERF58, AP2/EREBP#032, AP2/EREBP32	ETHYLENE RESPONSE FACTOR 58	ethylene response factor 58, APETALA2/ethylene-responsive element binding protein 32	ETHYLENE RESPONSE FACTOR 58		3		 Other	Os03g0815800	LOC_Os03g60120.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10575	ERF61	OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93	ETHYLENE RESPONSE FACTOR 61	ethylene response factor 61, APETALA2/ethylene-responsive element binding protein 93	ETHYLENE RESPONSE FACTOR 61		5	AJ575218.	 Seed,  Other	Os05g0361700	LOC_Os05g29810.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
10576	ERF62	OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125	ETHYLENE RESPONSE FACTOR 62	ethylene response factor 62, APETALA2/ethylene-responsive element binding protein 125	ETHYLENE RESPONSE FACTOR 62	OsLG3IRAT109, OsLG3Nipponbare	3	LOC_Os03g08470. GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other	Os03g0183000	LOC_Os03g08470.3, LOC_Os03g08470.2, LOC_Os03g08470.1				GO:0008284 - positive regulation of cell proliferation, GO:0009739 - response to gibberellin stimulus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0006970 - response to osmotic stress, GO:0005634 - nucleus, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000173 - ethylene sensitivity, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000590 - grain weight, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root 
10577	ERF64	OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4	ETHYLENE RESPONSE FACTOR 64	ethylene response factor 64, APETALA2/ethylene-responsive element binding protein 29, benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 4, benzothiadiazole-induced ethylene responsive transcriptional factor 4, BTH-induced ethylene responsive transcriptional factor 4, BTH-induced ERF transcriptional factor 4	ETHYLENE RESPONSE FACTOR 64		3	AAK92632. AY831395.	 Other	Os03g0183300	LOC_Os03g08500.2, LOC_Os03g08500.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10578	ERF65	OsERF#065, OsERF065, OsERF65, AP2/EREBP#107, AP2/EREBP107	ETHYLENE RESPONSE FACTOR 65	ethylene response factor 65, APETALA2/ethylene-responsive element binding protein 107	ETHYLENE RESPONSE FACTOR 65		7		 Other	Os07g0617000	LOC_Os07g42510.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10579	ERF66	OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30	ETHYLENE RESPONSE FACTOR 66	ethylene response factor 66, APETALA2/ethylene-responsive element binding protein 30	ETHYLENE RESPONSE FACTOR 66		3		 Tolerance and resistance - Stress tolerance,  Other	Os03g0341000	LOC_Os03g22170.1				GO:0034059 - response to anoxia, GO:0030912 - response to deep water, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000524 - submergence tolerance	
10580	ERF67	OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76	ETHYLENE RESPONSE FACTOR 67	ethylene response factor 67, APETALA2/ethylene-responsive element binding protein 76	ETHYLENE RESPONSE FACTOR 67		7		 Tolerance and resistance - Stress tolerance,  Other	Os07g0674800	LOC_Os07g47790.2, LOC_Os07g47790.1				GO:0030912 - response to deep water, GO:0034059 - response to anoxia, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000524 - submergence tolerance	
10581	ERF68	OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2	ETHYLENE RESPONSE FACTOR 68	ethylene response factor 68, APETALA2/ethylene-responsive element binding protein 3, ethylene response factor 2	ETHYLENE RESPONSE FACTOR 68		1	AJ575219.	 Seed,  Tolerance and resistance - Stress tolerance,  Other	Os01g0313300	LOC_Os01g21120.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0001666 - response to hypoxia, GO:0006351 - transcription, DNA-dependent	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
10582	ERF69	OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28	ETHYLENE RESPONSE FACTOR 69	ethylene response factor 69, APETALA2/ethylene-responsive element binding protein 28	ETHYLENE RESPONSE FACTOR 69		3		 Other	Os03g0183200	LOC_Os03g08490.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10583	ERF71	OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15	ETHYLENE RESPONSE FACTOR 71	ethylene response factor 71, APETALA2/ethylene-responsive element binding protein 124, ethylene response factor 15	ETHYLENE RESPONSE FACTOR 71		6	ABH04236. LOC_Os06g09390. TO:0001055: root aerenchyma cross-sectional area.	 Vegetative organ - Root,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Other	Os06g0194000	LOC_Os06g09390.2, LOC_Os06g09390.1				GO:0005829 - cytosol, GO:0006351 - transcription, DNA-dependent, GO:0009753 - response to jasmonic acid stimulus, GO:0042545 - cell wall modification, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0048364 - root development, GO:0005634 - nucleus	TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0006085 - root meristem , PO:0006203 - pericycle , PO:0005059 - root endodermis 
10584	ERF74	OsERF#074, OsERF074, OsERF74, AP2/EREBP#051, AP2/EREBP51	ETHYLENE RESPONSE FACTOR 74	ethylene response factor 74, APETALA2/ethylene-responsive element binding protein 51	ETHYLENE RESPONSE FACTOR 74		5		 Other	Os05g0497300	LOC_Os05g41780.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10585	ERF76	OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46	ETHYLENE RESPONSE FACTOR 76	ethylene response factor 76, APETALA2/ethylene-responsive element binding protein 46	ETHYLENE RESPONSE FACTOR 76		4		 Tolerance and resistance - Stress tolerance,  Other	Os04g0669200	LOC_Os04g57340.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent	TO:0006001 - salt tolerance	
10586	ERF79	OsERF#079, OsERF079, OsERF79, AP2/EREBP#017, AP2/EREBP17	ETHYLENE RESPONSE FACTOR 79	ethylene response factor 79, APETALA2/ethylene-responsive element binding protein 17	ETHYLENE RESPONSE FACTOR 79		2		 Other	Os02g0594300	LOC_Os02g38090.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10587	ERF80	OsERF#080, OsERF080, OsERF80, AP2/EREBP#069, AP2/EREBP69	ETHYLENE RESPONSE FACTOR 80	ethylene response factor 80, APETALA2/ethylene-responsive element binding protein 69	ETHYLENE RESPONSE FACTOR 80		8		 Other	Os08g0173700	LOC_Os08g07700.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10588	ERF81	OsERF#081, OsERF081, OsERF81, AP2/EREBP#014, AP2/EREBP14	ETHYLENE RESPONSE FACTOR 81	ethylene response factor 81, APETALA2/ethylene-responsive element binding protein 14	ETHYLENE RESPONSE FACTOR 81		2		 Other	Os02g0520000	LOC_Os02g32040.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10589	ERF82	OsERF#082, OsERF082, OsERF82, AP2/EREBP#035, AP2/EREBP35	ETHYLENE RESPONSE FACTOR 82	ethylene response factor 82, APETALA2/ethylene-responsive element binding protein 35	ETHYLENE RESPONSE FACTOR 82		4		 Other	Os04g0399800	LOC_Os04g32790.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10590	ERF83	OsERF#083, OsERF083, OsERF83, AP2/EREBP#163, AP2/EREBP163	ETHYLENE RESPONSE FACTOR 83	ethylene response factor 83, APETALA2/ethylene-responsive element binding protein 163	ETHYLENE RESPONSE FACTOR 83		3		 Other	Os03g0860100	LOC_Os03g64260.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
10591	ERF85	OsERF#085, OsERF085, OsERF85, AP2/EREBP#151, AP2/EREBP151, AP2/EREBP#062, AP2/EREBP62	ETHYLENE RESPONSE FACTOR 85	ethylene response factor 85, APETALA2/ethylene-responsive element binding protein 151, APETALA2/ethylene-responsive element binding protein 62	ETHYLENE RESPONSE FACTOR 85		5	LOC_Os05g37640 (Os05g0448675 and Os05g0448700 by RAP DB ID converter).	 Other	Os05g0448700	LOC_Os05g37640.1						
10592	ERF87	OsERF#087, OsERF087, OsERF87, AP2/EREBP#067, AP2/EREBP67	ETHYLENE RESPONSE FACTOR 87	ethylene response factor 87, APETALA2/ethylene-responsive element binding protein 67	ETHYLENE RESPONSE FACTOR 87		9		 Other	Os09g0572000	LOC_Os09g39850.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10593	ERF88	OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23	ETHYLENE RESPONSE FACTOR 88	ethylene response factor 88, APETALA2/ethylene-responsive element binding protein 24, AP2/ERF Transcription Factor 23	ETHYLENE RESPONSE FACTOR 88		3	AY339376. OsAP23 might be a negative regulator ofthe salt stress response in higher plants (Zhuang et al. 2013).	 Tolerance and resistance - Stress tolerance,  Other	Os03g0150200	LOC_Os03g05590.1				GO:0010200 - response to chitin, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0006001 - salt tolerance	
10594	ERF89	OsERF#089, OsERF089, OsERF89, AP2/EREBP#154, AP2/EREBP154	ETHYLENE RESPONSE FACTOR 89	ethylene response factor 89, APETALA2/ethylene-responsive element binding protein 154	ETHYLENE RESPONSE FACTOR 89		10	LOC_Os10g30840. (Os10g0445100 in PMID:22807623).	 Other		LOC_Os10g30840				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0010200 - response to chitin, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10595	ERF90	OsERF#090, OsERF090, OsERF90, AP2/EREBP#071, AP2/EREBP71	ETHYLENE RESPONSE FACTOR 90	ethylene response factor 90, APETALA2/ethylene-responsive element binding protein 71	ETHYLENE RESPONSE FACTOR 90		8	LOC_Os08g44960. (Os08g0563600 in PMID:22807623).	 Other		LOC_Os08g44960				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0010200 - response to chitin, GO:0003677 - DNA binding		
10596	ERF94	OsERF#094, OsERF094, OsERF94, AP2/EREBP#039, AP2/EREBP39	ETHYLENE RESPONSE FACTOR 94	ethylene response factor 94, APETALA2/ethylene-responsive element binding protein 39	ETHYLENE RESPONSE FACTOR 94		4		 Other	Os04g0547600	LOC_Os04g46250.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10597	ERF95	OsERF#095, OsERF095, OsERF95, AP2/EREBP#020, AP2/EREBP20, OsSta2, Sta2	ETHYLENE RESPONSE FACTOR 95	ethylene response factor 95, APETALA2/ethylene-responsive element binding protein 20, Salt tolerance activation 2	ETHYLENE RESPONSE FACTOR 95		2	LOC_Os02g43820.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other	Os02g0655200	LOC_Os02g43820.1				GO:0006351 - transcription, DNA-dependent, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000346 - tiller number, TO:0000442 - plant fresh weight, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000352 - plant dry weight, TO:0000495 - chlorophyll content, TO:0001033 - relative spikelet number, TO:0000590 - grain weight, TO:0002661 - seed maturation, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000615 - abscisic acid sensitivity	
10598	ERF97	OsERF#097, OsERF097, OsERF97, AP2/EREBP#038, AP2/EREBP38	ETHYLENE RESPONSE FACTOR 97	ethylene response factor 97, APETALA2/ethylene-responsive element binding protein 38	ETHYLENE RESPONSE FACTOR 97		4		 Other	Os04g0547500	LOC_Os04g46240.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10599	ERF98	OsERF#098, OsERF098, OsERF98, AP2/EREBP#120, AP2/EREBP120	ETHYLENE RESPONSE FACTOR 98	ethylene response factor 98, APETALA2/ethylene-responsive element binding protein 120	ETHYLENE RESPONSE FACTOR 98		2		 Other	Os02g0546600	LOC_Os02g34260.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10600	ERF99	OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2	ETHYLENE RESPONSE FACTOR 99	ethylene response factor 99, APETALA2/ethylene-responsive element binding protein 80, ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN2	ETHYLENE RESPONSE FACTOR 99		1	LOC_Os01g64790.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0868000	LOC_Os01g64790.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
10601	ERF100	OsERF#100, OsERF100, AP2/EREBP#036, AP2/EREBP36	ETHYLENE RESPONSE FACTOR 100	ethylene response factor 100, APETALA2/ethylene-responsive element binding protein 36	ETHYLENE RESPONSE FACTOR 100		4		 Other	Os04g0429050	LOC_Os04g34970.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10602	ERF102	OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB	ETHYLENE RESPONSE FACTOR 102	ethylene response factor 102, APETALA2/ethylene-responsive element binding protein 123, ERF protein associated with tillering and panicle branching	ETHYLENE RESPONSE FACTOR 102		9	EU622934. LOC_Os09g28440.	 Other	Os09g0457900	LOC_Os09g28440.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009723 - response to ethylene stimulus	TO:0002675 - gibberellic acid content, TO:0000173 - ethylene sensitivity	
10603	ERF105	OsERF#105, OsERF105, AP2/EREBP#050, AP2/EREBP50	ETHYLENE RESPONSE FACTOR 105	ethylene response factor 105, APETALA2/ethylene-responsive element binding protein 50	ETHYLENE RESPONSE FACTOR 105		5	LOC_Os05g36100.	 Other	Os05g0437050/Os05g0437100							
10604	ERF107	OsERF#107, OsERF107, AP2/EREBP#015, AP2/EREBP15	ETHYLENE RESPONSE FACTOR 107	ethylene response factor 107, APETALA2/ethylene-responsive element binding protein 15	ETHYLENE RESPONSE FACTOR 107		2		 Other	Os02g0521100	LOC_Os02g32140.1						
10605	ERF109	OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63	ETHYLENE RESPONSE FACTOR 109	ethylene response factor 109, APETALA2/ethylene-responsive element binding protein 63	ETHYLENE RESPONSE FACTOR 109		9		 Other	Os09g0309700	LOC_Os09g13940.5, LOC_Os09g13940.4, LOC_Os09g13940.3, LOC_Os09g13940.2, LOC_Os09g13940.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10606	ERF110	OsERF#110, OsERF110, AP2/EREBP#008, AP2/EREBP8	ETHYLENE RESPONSE FACTOR 110	ethylene response factor 110, APETALA2/ethylene-responsive element binding protein 8	ETHYLENE RESPONSE FACTOR 110		12	LOC_Os12g41030 (Os12g0602966 in PMID:22807623).	 Other		LOC_Os12g41030				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10607	ERF111	OsERF#111, OsERF111	ETHYLENE RESPONSE FACTOR 111	ethylene response factor 111	ETHYLENE RESPONSE FACTOR 111		12	LOC_Os12g41040.	 Other		LOC_Os12g41040				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
10608	ERF112	OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9	ETHYLENE RESPONSE FACTOR 112	ethylene response factor 112, APETALA2/ethylene-responsive element binding protein 9	ETHYLENE RESPONSE FACTOR 112		12		 Other	Os12g0603300	LOC_Os12g41060.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10609	ERF113	OsERF#113, OsERF113, AP2/EREBP#058, AP2/EREBP58	ETHYLENE RESPONSE FACTOR 113	ethylene response factor 113, APETALA2/ethylene-responsive element binding protein 58	ETHYLENE RESPONSE FACTOR 113		6		 Other	Os06g0636000	LOC_Os06g42990.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10610	ERF114	OsERF#114, OsERF114	ETHYLENE RESPONSE FACTOR 114	ethylene response factor 114	ETHYLENE RESPONSE FACTOR 114		6		 Other	Os06g0635700	LOC_Os06g42910.1						PO:0009089 - endosperm 
10611	ERF115	OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123	ETHYLENE RESPONSE FACTOR 115	ethylene response factor 115, APETALA2/ethylene-responsive element binding protein 110, endosperm-specific gene 123	ETHYLENE RESPONSE FACTOR 115		8	LOC_Os08g41030.	 Other	Os08g0521600	LOC_Os08g41030.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		PO:0005360 - aleurone layer , PO:0009089 - endosperm 
10612	ERF117	OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4	ETHYLENE RESPONSE FACTOR 117	ethylene response factor 117, APETALA2/ethylene-responsive element binding protein 150	ETHYLENE RESPONSE FACTOR 117		5	C7J2Z1. LOC_Os05g28350. GO:0044212: transcription regulatory region DNA binding.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0351200	LOC_Os05g28350.1				GO:0010162 - seed dormancy, GO:0006950 - response to stress, GO:0043565 - sequence-specific DNA binding, GO:0009793 - embryonic development ending in seed dormancy, GO:0048527 - lateral root development, GO:0019915 - lipid storage, GO:0009933 - meristem structural organization, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0031930 - mitochondrial signaling pathway, GO:0009640 - photomorphogenesis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0016567 - protein ubiquitination, GO:0009909 - regulation of flower development, GO:0032880 - regulation of protein localization, GO:0010896 - regulation of triglyceride catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0050826 - response to freezing, GO:0009749 - response to glucose stimulus, GO:0006970 - response to osmotic stress, GO:0010353 - response to trehalose stimulus, GO:0009414 - response to water deprivation, GO:0010449 - root meristem growth, GO:0005983 - starch catabolic process, GO:0010182 - sugar mediated signaling, GO:0010228 - vegetative to reproductive phase transition, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10613	ERF118	OsERF#118, OsERF118, AP2/EREBP#117, AP2/EREBP117	ETHYLENE RESPONSE FACTOR 118	ethylene response factor 118, APETALA2/ethylene-responsive element binding protein 117	ETHYLENE RESPONSE FACTOR 118		11		 Other	Os11g0168500	LOC_Os11g06770.2, LOC_Os11g06770.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10614	ERF119	OsERF#119, OsERF119, AP2/EREBP#104, AP2/EREBP104	ETHYLENE RESPONSE FACTOR 119	ethylene response factor 119, APETALA2/ethylene-responsive element binding protein 104	ETHYLENE RESPONSE FACTOR 119		6	LOC_Os06g10780 (Os06g0210300 in PMID:22807623).	 Other		LOC_Os06g10780				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10615	ERF120	OsERF#120, OsERF120, AP2/EREBP#105, AP2/EREBP105	ETHYLENE RESPONSE FACTOR 120	ethylene response factor 120, APETALA2/ethylene-responsive element binding protein 105	ETHYLENE RESPONSE FACTOR 120		6		 Other	Os06g0222400	LOC_Os06g11860.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10616	ERF121	OsERF#121, OsERF121, AP2/EREBP#061, AP2/EREBP61	ETHYLENE RESPONSE FACTOR 121	ethylene response factor 121, APETALA2/ethylene-responsive element binding protein 61	ETHYLENE RESPONSE FACTOR 121		6		 Other	Os06g0691100	LOC_Os06g47590.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
10617	ERF122	OsERF#122, OsERF122, AP2/EREBP#056, AP2/EREBP56	ETHYLENE RESPONSE FACTOR 122	ethylene response factor 122, APETALA2/ethylene-responsive element binding protein 56	ETHYLENE RESPONSE FACTOR 122		6		 Other	Os06g0553700	LOC_Os06g36000.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10618	ERF123	OsERF#123, OsERF123, AP2/EREBP#066, AP2/EREBP66	ETHYLENE RESPONSE FACTOR 123	ethylene response factor 123, APETALA2/ethylene-responsive element binding protein 66	ETHYLENE RESPONSE FACTOR 123		9	LOC_Os09g39810.	 Tolerance and resistance - Disease resistance,  Other	Os09g0571700	LOC_Os09g39810.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0010200 - response to chitin, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000175 - bacterial blight disease resistance	
10619	ERF125	OsERF#125, OsERF125, AP2/EREBP#016, AP2/EREBP16	ETHYLENE RESPONSE FACTOR 125	ethylene response factor 125, APETALA2/ethylene-responsive element binding protein 16	ETHYLENE RESPONSE FACTOR 125		2	LOC_Os02g34270 (Os02g0546800 in PMID:22807623).	 Other		LOC_Os02g34270				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0010200 - response to chitin, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10620	ERF126	OsERF#126, OsERF126	ETHYLENE RESPONSE FACTOR 126	ethylene response factor 126	ETHYLENE RESPONSE FACTOR 126		2		 Other	Os02g0767700	LOC_Os02g52880.2, LOC_Os02g52880.1				GO:0004812 - aminoacyl-tRNA ligase activity		
10621	ERF128	OsERF#128, OsERF128, AP2/EREBP#034, AP2/EREBP34	ETHYLENE RESPONSE FACTOR 128	ethylene response factor 128, APETALA2/ethylene-responsive element binding protein 34	ETHYLENE RESPONSE FACTOR 128		4		 Other	Os04g0257500	LOC_Os04g18650.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0010200 - response to chitin		
10622	ERF129	OsERF#129, OsERF129, AP2/EREBP#045, AP2/EREBP45	ETHYLENE RESPONSE FACTOR 129	ethylene response factor 129, APETALA2/ethylene-responsive element binding protein 45	ETHYLENE RESPONSE FACTOR 129		4		 Other	Os04g0655700	LOC_Os04g56150.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10623	ERF130	OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165	ETHYLENE RESPONSE FACTOR 130	ethylene response factor 130, APETALA2/ethylene-responsive element binding protein 165	ETHYLENE RESPONSE FACTOR 130		5		 Other	Os05g0497200	LOC_Os05g41760.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10624	ERF131	OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1	ETHYLENE RESPONSE FACTOR 131	ethylene response factor 131, APETALA2/ethylene-responsive element binding protein 94, SALT-RESPONSIVE ERF1	ETHYLENE RESPONSE FACTOR 131	serf1	5	JQ246414.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0420300	LOC_Os05g34730.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0000302 - response to reactive oxygen species, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000333 - sugar content	
10625	ERF132	OsERF#132, OsERF132, AP2/EREBP#010, AP2/EREBP10	ETHYLENE RESPONSE FACTOR 132	ethylene response factor 132, APETALA2/ethylene-responsive element binding protein 10	ETHYLENE RESPONSE FACTOR 132		2	LOC_Os02g06330 (Os02g0158000 in PMID:22807623).	 Other		LOC_Os02g06330				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10626	ERF133	OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m	ETHYLENE RESPONSE FACTOR 133	ethylene response factor 133, APETALA2/ethylene-responsive element binding protein 65, Dehydration-responsive element-binding protein 1H	ETHYLENE RESPONSE FACTOR 133		9	LOC_Os09g35020. Q0J090. A2Z388. CK007053. ObDREB1m is the orthologous gene in O. brachyantha.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0522100	LOC_Os09g35020.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0003677 - DNA binding		
10627	ERF134	OsERF#134, OsERF134, AP2/EREBP#011, AP2/EREBP11	ETHYLENE RESPONSE FACTOR 134	ethylene response factor 134, APETALA2/ethylene-responsive element binding protein 11	ETHYLENE RESPONSE FACTOR 134		2	LOC_Os02g09650 (Os02g0189600 (Chlorophyll a/b-binding protein , not found in IRGSP-1.0) in PMID:22807623) in Rashid et al. 2012.	 Other						GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10628	ERF135	OsERF#135, OsERF135	ETHYLENE RESPONSE FACTOR 135	ethylene response factor 135	ETHYLENE RESPONSE FACTOR 135		8	BAC99579.1a	 Other						GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10629	ERF136	OsERF#136, OsERF136, AP2/EREBP#106, AP2/EREBP106, AP2-106	ETHYLENE RESPONSE FACTOR 136	ethylene response factor 136, APETALA2/ethylene-responsive element binding protein 106	ETHYLENE RESPONSE FACTOR 136		7	LOC_Os07g22730.	 Other	Os07g0410300	LOC_Os07g22730.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10630	ERF137	OsERF#137, OsERF137, AP2/EREBP136, AP2/EREBP#136	ETHYLENE RESPONSE FACTOR 137	ethylene response factor 137, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 136	ETHYLENE RESPONSE FACTOR 137		3	LOC_Os03g02650.	 Other	Os03g0117900	LOC_Os03g02650.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10631	ERF138	OsERF#138, OsERF138, AP2/EREBP#108, AP2/EREBP108	ETHYLENE RESPONSE FACTOR 138	ethylene response factor 138, APETALA2/ethylene-responsive element binding protein 108	ETHYLENE RESPONSE FACTOR 138		8		 Other	Os08g0360800	LOC_Os08g27230.1, LOC_Os08g27220.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10632	ERF139	OsERF#139, OsERF139	ETHYLENE RESPONSE FACTOR 139	ethylene response factor 139	ETHYLENE RESPONSE FACTOR 139		6	LOC_Os06g09730 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Other								
10633	ERF140	OsERF#140, OsERF140, AP2/EREBP#013, AP2/EREBP13	ETHYLENE RESPONSE FACTOR 140	ethylene response factor 140, APETALA2/ethylene-responsive element binding protein 13	ETHYLENE RESPONSE FACTOR 140		2		 Other	Os02g0499000	LOC_Os02g29550.3, LOC_Os02g29550.2, LOC_Os02g29550.1						
10634	ERF141	OsERF#141, OsERF141, AP2/EREBP#019, AP2/EREBP19	ETHYLENE RESPONSE FACTOR 141	ethylene response factor 141, APETALA2/ethylene-responsive element binding protein 19	ETHYLENE RESPONSE FACTOR 141		2		 Other	Os02g0638650	LOC_Os02g42585.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10635	ERF142	OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1	ETHYLENE RESPONSE FACTOR 142	ethylene response factor 142, APETALA2/ethylene-responsive element binding protein 49, small organ size1, small organ size 1, SHOEBOX, shoebox, reduced leaf angle1, reduced leaf angle 1	ETHYLENE RESPONSE FACTOR 142	smos1, smos1-1, smos1-2, smos1-3, sub, rla1	5	an unusual APETALA2 (AP2)-type transcription factor with an imperfect AP2 domain. AB897877. Transcriptome analysis in rice smos1 mutant: GEOID: GSE54357. LOC_Os05g32270. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:1900457: regulation of brassinosteroid mediated signaling pathway	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Other	Os05g0389000	LOC_Os05g32270.1, LOC_Os05g32270.2				GO:0008283 - cell proliferation, GO:0009742 - brassinosteroid mediated signaling, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0000226 - microtubule cytoskeleton organization, GO:0009734 - auxin mediated signaling pathway, GO:0016049 - cell growth, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009845 - seed germination, GO:0009826 - unidimensional cell growth	TO:0001035 - stem width, TO:0000207 - plant height, TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0002684 - plant cell size, TO:0000734 - grain length, TO:0002692 - root meristem development, TO:0002637 - leaf size, TO:0000227 - root length, TO:0000391 - seed size, TO:0002601 - stamen size, TO:0002602 - pistil size	PO:0007057 - 0 seed germination stage , PO:0006085 - root meristem , PO:0007527 - 2 root meristem formation stage 
10636	ERF143	OsERF#143, OsERF143	ETHYLENE RESPONSE FACTOR 143	ethylene response factor 143	ETHYLENE RESPONSE FACTOR 143		6		 Other	Os06g0197600	LOC_Os06g09717.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
10637	ERF144	OsERF#144, OsERF144	ETHYLENE RESPONSE FACTOR 144	ethylene response factor 144	ETHYLENE RESPONSE FACTOR 144		10	LOC_Os10g26590.	 Other		LOC_Os10g26590				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10638	ERF145	OsERF#145, OsERF145	ETHYLENE RESPONSE FACTOR 145	ethylene response factor 145	ETHYLENE RESPONSE FACTOR 145		12	LOC_Os12g40960.	 Other		LOC_Os12g40960				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10639	AP2/EREBP47	AP2/EREBP#047	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 47	APETALA2/ethylene-responsive element binding protein 47	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 47		2	AP004768.3	 Other								
10640	ERF8	OsERF#008, OsERF008, OsERF8, AP2/EREBP#128, AP2/EREBP128	ETHYLENE RESPONSE FACTOR 8	ethylene response factor 8, APETALA2/ethylene-responsive element binding protein 128	ETHYLENE RESPONSE FACTOR 8		4		 Other	Os04g0648900	LOC_Os04g55520.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10641	ERF13	OsERF#013, OsERF013, OsERF13, AP2/EREBP#143, AP2/EREBP143	ETHYLENE RESPONSE FACTOR 13	ethylene response factor 13, APETALA2/ethylene-responsive element binding protein 143	ETHYLENE RESPONSE FACTOR 13		6		 Other	Os06g0223100	LOC_Os06g11940.1						
10642	AP2/EREBP77	AP2/EREBP#077, OsRAV1, RAV1	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 77	APETALA2/ethylene-responsive element binding protein 77, related to ABI3/VP1-1, RAV subfamily member 1	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 77		1	LOC_Os01g04750. Q9AWS7. 	 Other	Os01g0140700	LOC_Os01g04750.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10643	AP2/EREBP129	AP2/EREBP#129, OsRAV2, RAV2	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 129	APETALA2/ethylene-responsive element binding protein 129, related to ABI3/VP1-2, RAV subfamily member 2	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 129		1	Q9AWS0. 	 Tolerance and resistance - Stress tolerance,  Other	Os01g0141000	LOC_Os01g04800.1				GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus, GO:0009910 - negative regulation of flower development, GO:0048366 - leaf development, GO:0048527 - lateral root development, GO:0048573 - photoperiodism, flowering	TO:0006001 - salt tolerance	
10644	AP2/EREBP127	AP2/EREBP#127	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 127	APETALA2/ethylene-responsive element binding protein 127	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 127		1	LOC_Os01g49830. Q8RZX9. a rice RAV subfamily member.	 Other	Os01g0693400	LOC_Os01g49830.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10645	AP2/EREBP79	AP2/EREBP#079	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 79	APETALA2/ethylene-responsive element binding protein 79	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 79		1		 Other	Os01g0813300	LOC_Os01g59780.1						
10648	AP2/EREBP22	AP2/EREBP#022	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 22	APETALA2/ethylene-responsive element binding protein 22	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 22		2		 Other	Os02g0747600	LOC_Os02g51300.1						
10649	AP2/EREBP139	AP2/EREBP#139	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 139	APETALA2/ethylene-responsive element binding protein 139	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 139		2		 Other	Os02g0767800							
10651	AP2/EREBP85	AP2/EREBP#085	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 85	APETALA2/ethylene-responsive element binding protein 85	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 85		3		 Other	Os03g0165200	LOC_Os03g06920.1				GO:0005634 - nucleus, GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10654	AP2/EREBP86	AP2/EREBP#086	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 86	APETALA2/ethylene-responsive element binding protein 86	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 86		3		 Other	Os03g0313100	LOC_Os03g19900.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10659	AP2/EREBP92	AP2/EREBP#092	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 92	APETALA2/ethylene-responsive element binding protein 92	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 92		5		 Other	Os05g0356201	LOC_Os05g28800.1						
10660	AP2/EREBP52	AP2/EREBP#052, ERF52	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 52	APETALA2/ethylene-responsive element binding protein 52	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 52		5		 Other	Os05g0536250	LOC_Os05g45954.1						
10661	AP2/EREBP96	AP2/EREBP#096	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 96	APETALA2/ethylene-responsive element binding protein 96	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 96		5	 LOC_Os05g47650. Q6L4H4. a rice RAV subfamily member.	 Other	Os05g0549800	LOC_Os05g47650.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10662	AP2/EREBP99	AP2/EREBP#099	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 99	APETALA2/ethylene-responsive element binding protein 99	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 99		6		 Other	Os06g0145700	LOC_Os06g05340.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10663	AP2/EREBP31	AP2/EREBP#031	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 31	APETALA2/ethylene-responsive element binding protein 31	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 31		6	AP006056.	 Other								
10664	AP2/EREBP101	AP2/EREBP#101	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 101	APETALA2/ethylene-responsive element binding protein 101	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 101		6	LOC_Os06g09717 (Os06g0197600 by RAP DB ID converter, Os06g0197200 in PMID:22807623).	 Other	Os06g0197600 	LOC_Os06g09717.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10665	AP2/EREBP59	AP2/EREBP#059, AP2-4	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 59	APETALA2/ethylene-responsive element binding protein 59, APETALA2-4	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 59		6	LOC_Os06g43220. AP2-4 in Dai et al. 2016.	 Seed - Morphological traits,  Other	Os06g0639200	LOC_Os06g43220.1				GO:0003700 - transcription factor activity	TO:0000397 - grain size, TO:0000382 - 1000-seed weight	
10668	AP2/EREBP68	AP2/EREBP#068	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 68	APETALA2/ethylene-responsive element binding protein 68	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 68		8		 Other	Os08g0171100	LOC_Os08g07440.1				GO:0003700 - transcription factor activity		
10669	AP2/EREBP109	AP2/EREBP#109	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 109	APETALA2/ethylene-responsive element binding protein 109	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 109		8	HQ858820. AP2-EREBP transcription factor.	 Tolerance and resistance - Stress tolerance	Os08g0442400	LOC_Os08g34360.1				GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0010187 - negative regulation of seed germination, GO:0040008 - regulation of growth		
10670	AP2/EREBP153	AP2/EREBP#153	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 153	APETALA2/ethylene-responsive element binding protein 153	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 153		9		 Tolerance and resistance - Stress tolerance	Os09g0423800	LOC_Os09g25600.1				GO:0010187 - negative regulation of seed germination, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0040008 - regulation of growth, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10671	AP2/EREBP131	AP2/EREBP#131	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 131	APETALA2/ethylene-responsive element binding protein 131	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 131		11	AJ575217.	 Seed,  Other	Os11g0129700	LOC_Os11g03540.1					TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
10673	AP2/EREBP155	AP2/EREBP#155	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 155	APETALA2/ethylene-responsive element binding protein 155	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 155		12		 Other	Os12g0126300	LOC_Os12g03290.1				GO:0006110 - regulation of glycolysis, GO:0019432 - triglyceride biosynthetic process, GO:0009744 - response to sucrose stimulus, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10674	_	BFL1	_	BRANCHED FLORETLESS 1		bfl1	7	AP004570, P0625E02.25. BFL1 is most probably a rice ortholog of the maize ERF (EREBP/AP2) transcription factor gene BD1. Based on the similarities in mutant phenotypes bfl1 is likely to be an allele of the previously reported frizzy panicle locus.	 Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0010074 - maintenance of meristem identity	TO:0006017 - meristem identity, TO:0000621 - inflorescence development trait	
10675	_	atp6-orfH79	_	CMS-associated transcript atp6-orfH79	_		Mt		 Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000350 - cms-hl type, TO:0000053 - pollen sterility	
10678	_	OsMPK16, MPK16, OsMPK15, MPK15	_	MAP kinase 16	_	mpk15	11	Q53N72. OsMPK15 in Hong et al. 2019. GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os11g0271100	LOC_Os11g17080.3, LOC_Os11g17080.2, LOC_Os11g17080.1				GO:0031348 - negative regulation of defense response, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005773 - vacuole, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding, GO:0000165 - MAPKKK cascade, GO:0005886 - plasma membrane	TO:0002668 - jasmonic acid content, TO:0000605 - hydrogen peroxide content, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000447 - filled grain number, TO:0000180 - spikelet fertility, TO:0000592 - 1000-dehulled grain weight, TO:0000449 - grain yield per plant, TO:0000391 - seed size	
10679	_	OsMPK20-1	_	MAP kinase 20-1	_		1	Q5ZCI1.	 Biochemical character	Os01g0629900	LOC_Os01g43910.1				GO:0005524 - ATP binding, GO:0004707 - MAP kinase activity, GO:0000165 - MAPKKK cascade		
10680	_	OsMPK20-3	_	MAP kinase 20-3	_		6	Q5VN19.	 Biochemical character	Os06g0367900	LOC_Os06g26340.3, LOC_Os06g26340.2, LOC_Os06g26340.1				GO:0000165 - MAPKKK cascade, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding		
10681	_	OsMPK20-4, OsWJUMK, WJUMK, OsWJUMK1, WJUMK1, MAPK8, OsMPK8, MPK8	_	MAP kinase 20-4, Wound- and JA-uninducible MAP kinase 1	_		1	Q5SN53. AJ512643. MAPK8 in Katsuragi et al. 2008. OsMPK8 in Nanda et al. 2018.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0665200	LOC_Os01g47530.1, LOC_Os01g47530.2, LOC_Os01g47530.4, LOC_Os01g47530.3				GO:0009611 - response to wounding, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0005524 - ATP binding, GO:0000165 - MAPKKK cascade, GO:0004707 - MAP kinase activity, GO:0002237 - response to molecule of bacterial origin	TO:0000424 - brown planthopper resistance	
10682	_	OsWD40-1, WD40-1, OsWD40, WD40	_	WD-40 repeat domain-containing protein			1	LOC_Os01g03510.1		Os01g0125800	LOC_Os01g03510.1				GO:0051015 - actin filament binding, GO:0030042 - actin filament depolymerization, GO:0030836 - positive regulation of actin filament depolymerization, GO:0042643 - actomyosin, actin part, GO:0005634 - nucleus, GO:0030864 - cortical actin cytoskeleton		
10683	_	OsWD40-2, UV-DDB2, OsUV-DDB2	_	UV-damaged DNA binding protein 2, Ultraviolet-damaged DNA binding protein 2			1	AK082381. AB082381.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0141700	LOC_Os01g04870.1				GO:0006281 - DNA repair, GO:0010224 - response to UV-B, GO:0005634 - nucleus		
10685	_	OsWD40-4	_				1			Os01g0177100	LOC_Os01g08190.5, LOC_Os01g08190.3, LOC_Os01g08190.2, LOC_Os01g08190.1						
10686	_	OsWD40-5	_				1			Os01g0183100	LOC_Os01g08770.1						
10687	_	OsWD40-6	_				1			Os01g0185400	LOC_Os01g09020.1						
10688	_	OsWD40-7	_				1			Os01g0187500	LOC_Os01g09252.1						
10689	_	OsWD40-8	_				1			Os01g0205100	LOC_Os01g10790.1						
10690	_	OsWD40-9, OsPUB71	_	plant U-box-containing protein 71, U-box protein 71			1	class VI PUB protein (U-box + WD40). LOC_Os01g12930.	 Biochemical character	Os01g0229700	LOC_Os01g12930.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
10691	_	OsWD40-10	_				1			Os01g0232200	LOC_Os01g13140.1						
10692	_	OsWD40-11	_				1			Os01g0238900	LOC_Os01g13730.1				GO:0080008 - CUL4 RING ubiquitin ligase complex		
10693	_	OsWD40-12, TPR1	_	TOPLESS-RELATED PROTEIN 1			1	LOC_Os01g15020.	 Other	Os01g0254100	LOC_Os01g15020.2, LOC_Os01g15020.1				GO:0003714 - transcription corepressor activity, GO:0010072 - primary shoot apical meristem specification		
10694	_	OsWD40-13	_				1			Os01g0322800	LOC_Os01g21940.1				GO:0008380 - RNA splicing, GO:0005634 - nucleus		
10695	_	OsWD40-14	_				1	CT832474.		Os01g0383700	LOC_Os01g28680.9, LOC_Os01g28680.8, LOC_Os01g28680.7, LOC_Os01g28680.5, LOC_Os01g28680.4, LOC_Os01g28680.3, LOC_Os01g28680.2, LOC_Os01g28680.13, LOC_Os01g28680.12, LOC_Os01g28680.10, LOC_Os01g28680.1						
10696	_	OsWD40-15	_				1			Os01g0551900	LOC_Os01g37120.1						
10697	_	OsWD40-16	_				1			Os01g0575500	LOC_Os01g39380.3, LOC_Os01g39380.2, LOC_Os01g39380.1						
10698	_	OsWD40-17	_				1			Os01g0607400	LOC_Os01g42260.4, LOC_Os01g42260.3, LOC_Os01g42260.2, LOC_Os01g42260.1				GO:0009908 - flower development		
10699	_	OsWD40-18, WD40-18, LUG	_	transcriptional corepressor LEUNIG, LEUNIG			1	LOC_Os01g42270.		Os01g0607600	LOC_Os01g42270.1				GO:0005634 - nucleus, GO:0009908 - flower development		
10700	_	OsWD40-19, WD40-19	_				1		 Tolerance and resistance - Stress tolerance	Os01g0620100	LOC_Os01g43250.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	
10701	_	OsWD40-20	_				1			Os01g0635400	LOC_Os01g44394.1						
10703	_	OsWD40-22	_				1			Os01g0702400	LOC_Os01g50690.1				GO:0030833 - regulation of actin filament polymerization, GO:0005856 - cytoskeleton		
10704	_	OsWD40-23	_				1	DQ132808.		Os01g0710000	LOC_Os01g51300.2, LOC_Os01g51300.1				GO:0046872 - metal ion binding, GO:0005730 - nucleolus, GO:0005737 - cytoplasm, GO:0009908 - flower development, GO:0010090 - trichome morphogenesis, GO:0009965 - leaf morphogenesis, GO:0009826 - unidimensional cell growth		
10705	_	OsWD40-24, OsSPA3/4	_	SPA3/4-like			1	LOC_Os01g52640. one of rice SPA orthologs.		Os01g0725800	LOC_Os01g52640.3				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
10706	_	OsWD40-25	_				1			Os01g0776400	LOC_Os01g56860.1						
10707	_	OsWD40-26, OsKTN80c	_	katanin P80c, Katanin regulatory subunit P80c			1	a katanin P80 ortholog. a microtubule-severing enzyme.		Os01g0780400	LOC_Os01g57210.2, LOC_Os01g57210.1				GO:0051013 - microtubule severing, GO:0008352 - katanin complex		
10709	_	OsWD40-28	_				1			Os01g0857900	LOC_Os01g63900.1						
10710	_	OsWD40-29	_				1			Os01g0924300	LOC_Os01g69970.1						
10712	_	OsWD40-31	_				1			Os01g0946100	LOC_Os01g71780.1						
10713	_	OsWD40-32, OsFY, FY	_				1	DQ132809. a Homolog of AtFY. KC611002-KC611014 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Heading date	Os01g0951000	LOC_Os01g72220.1				GO:0006470 - protein amino acid dephosphorylation, GO:0048449 - floral organ formation, GO:0048825 - cotyledon development, GO:0001700 - embryonic development via the syncytial blastoderm, GO:0006397 - mRNA processing, GO:0009793 - embryonic development ending in seed dormancy, GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0010162 - seed dormancy, GO:0050826 - response to freezing, GO:0009909 - regulation of flower development, GO:0010564 - regulation of cell cycle process, GO:0016567 - protein ubiquitination, GO:0016570 - histone modification, GO:0030422 - production of siRNA involved in RNA interference, GO:0009880 - embryonic pattern specification, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0010072 - primary shoot apical meristem specification, GO:0043687 - post-translational protein modification, GO:0009845 - seed germination, GO:0007062 - sister chromatid cohesion, GO:0010182 - sugar mediated signaling, GO:0010228 - vegetative to reproductive phase transition, GO:0005623 - cell, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009640 - photomorphogenesis, GO:0000278 - mitotic cell cycle, GO:0010074 - maintenance of meristem identity, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0051301 - cell division, GO:0006406 - mRNA export from nucleus, GO:0031124 - mRNA 3'-end processing, GO:0019915 - lipid storage		
10714	_	OsWD40-33, OsCCS52B	_	cell cycle switch 52 B, cell cycle switch 52B, B-type cell cycle switch 52			1	OsCCS52B may be involved in cell expansion regulation in rice endosperm.	 Seed - Morphological traits	Os01g0972900	LOC_Os01g74146.1						
10715	_	OsWD40-34, OsRUP	_				2	CT835316. LOC_Os02g02380.		Os02g0114900	LOC_Os02g02380.1						
10716	_	OsWD40-35	_				2			Os02g0132800	LOC_Os02g03990.1						
10717	_	OsWD40-36	_				2	AK11732, CT832588, AB055156.		Os02g0135800	LOC_Os02g04320.2, LOC_Os02g04320.1				GO:0005730 - nucleolus		
10718	_	OsWD40-37	_				2	CT830604, CT835453, CT835452.		Os02g0162700	LOC_Os02g06720.1						
10719	_	OsWD40-38	_				2	CT833519.		Os02g0205400	LOC_Os02g11060.1				GO:0016301 - kinase activity		
10720	_	OsWD40-39	_				2			Os02g0245100	LOC_Os02g14790.1				GO:0006625 - protein targeting to peroxisome		
10721	_	OsWD40-40	_				2			Os02g0290300	LOC_Os02g18820.2, LOC_Os02g18820.1						
10722	_	OsWD40-41	_				2			Os02g0294600	LOC_Os02g19210.2, LOC_Os02g19210.1						
10723	_	OsWD40-42	_				2			Os02g0307200	LOC_Os02g20430.1				GO:0006281 - DNA repair, GO:0010224 - response to UV-B, GO:0005634 - nucleus		
10724	_	OsWD40-43	_				2			Os02g0319800	LOC_Os02g21490.1						
10725	_	OsWD40-44	_				2			Os02g0539900	LOC_Os02g33630.1						
10726	_	OsWD40-45	_				2			Os02g0543400	LOC_Os02g33860.1						
10727	_	OsWD40-46	_				2			Os02g0591600	LOC_Os02g37856.1						
10728	_	OsWD40-47	_				2	CT832990.		Os02g0638900	LOC_Os02g42590.3, LOC_Os02g42590.2, LOC_Os02g42590.1						
10729	_	OsWD40-48, OsSTA70	_				2	LOC_Os02g44380. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0663300	LOC_Os02g44380.2						PO:0009066 - anther 
10731	_	OsWD40-50, OsTTG1A, TTG1A, OsTTG1, TTG1	_	TRANSPARENT TESTA GLABRA1A, TRANSPARENT TESTA GLABRA 1A			2	Q0DYP5. LOC_Os02g45810. a homologue of Arabidopsis transcription factor TTG1.	 Coloration - Anthocyanin	Os02g0682500	LOC_Os02g45810.2, LOC_Os02g45810.1				GO:0045165 - cell fate commitment, GO:0010026 - trichome differentiation, GO:0009957 - epidermal cell fate specification, GO:0005737 - cytoplasm, GO:0007275 - multicellular organismal development, GO:0032880 - regulation of protein localization, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0006612 - protein targeting to membrane, GO:0010363 - regulation of plant-type hypersensitive response, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000071 - anthocyanin content, TO:0000486 - seed color	PO:0007632 - seed maturation stage 
10732	_	OsWD40-51, OsCDC20.1, WD40-51, CDC20.1	_	cell division cycle protein 20.1			2	CT830874. LOC_Os02g47180. WD repeat-containing protein. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0700100	LOC_Os02g47180.2, LOC_Os02g47180.1				GO:0007126 - meiosis		
10734	_	OsWD40-53	_				2			Os02g0722800	LOC_Os02g49090.2, LOC_Os02g49090.1				GO:0005634 - nucleus, GO:0000932 - cytoplasmic mRNA processing body, GO:0005829 - cytosol, GO:0009965 - leaf morphogenesis, GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA		
10735	_	OsWD40-54	_				2			Os02g0740900	LOC_Os02g50740.1						
10738	_	OsWD40-57	_				2			Os02g0796700	LOC_Os02g55340.1						
10739	_	OsWD40-58	_				2			Os02g0813800	LOC_Os02g56880.1				GO:0009908 - flower development, GO:0009790 - embryonic development		
10740	_	OsWD40-59	_				2			Os02g0817200	LOC_Os02g57220.1				GO:0030833 - regulation of actin filament polymerization, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005856 - cytoskeleton		
10741	_	OsWD40-60	_				3			Os03g0115400	LOC_Os03g02440.2, LOC_Os03g02440.1						
10743	_	OsWD40-62	_				3			Os03g0145600	LOC_Os03g05210.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
10744	_	OsWD40-63	_				3			Os03g0151700	LOC_Os03g05720.1				GO:0005730 - nucleolus		
10745	_	OsWD40-64	_				3			Os03g0187300	LOC_Os03g08830.1				GO:0005886 - plasma membrane		
10746	_	OsWD40-65	_				3			Os03g0207900	LOC_Os03g10990.1						
10747	_	OsWD40-66, TPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2	_	TOPLESS-RELATED PROTEIN 3, TOPLESS 2, topless-related 1			3	LOC_Os03g14980. TPR1 in Wang et al. 2015.	 Other	Os03g0254700	LOC_Os03g14980.2, LOC_Os03g14980.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010051 - xylem and phloem pattern formation, GO:0005829 - cytosol, GO:0010072 - primary shoot apical meristem specification, GO:0003714 - transcription corepressor activity, GO:0006338 - chromatin remodeling, GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus		
10748	_	OsWD40-67	_				3			Os03g0286800	LOC_Os03g17780.1				GO:0080008 - CUL4 RING ubiquitin ligase complex		
10749	_	OsWD40-68	_				3			Os03g0300300	LOC_Os03g18840.1						
10750	_	OsWD40-69	_				3			Os03g0306200	LOC_Os03g19340.1						
10751	_	OsWD40-70	_				3			Os03g0339100	LOC_Os03g21990.1				GO:0010182 - sugar mediated signaling, GO:0048825 - cotyledon development, GO:0042742 - defense response to bacterium, GO:0009755 - hormone-mediated signaling, GO:0009870 - defense response signaling pathway, resistance gene-dependent, GO:0010204 - defense response signaling pathway, resistance gene-independent, GO:0048366 - leaf development, GO:0006508 - proteolysis, GO:0005634 - nucleus, GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0048364 - root development, GO:0009749 - response to glucose stimulus		
10752	_	OsWD40-71	_				3			Os03g0355300	LOC_Os03g23920.1						
10753	_	OsWD40-72	_				3			Os03g0355200	LOC_Os03g23935.1				GO:0009560 - embryo sac egg cell differentiation, GO:0016607 - nuclear speck, GO:0001709 - cell fate determination		
10755	_	OsWD40-74	_				3			Os03g0397500	LOC_Os03g27970.1						
10756	_	OsWD40-75, Osthi6, thi6	_	thionin 6			3	LOC_Os03g32020.			LOC_Os03g32020						
10757	_	OsWD40-76	_				3			Os03g0448600	LOC_Os03g33580.2, LOC_Os03g33580.1				GO:0007094 - mitotic cell cycle spindle assembly checkpoint, GO:0000776 - kinetochore, GO:0009524 - phragmoplast		
10758	_	OsWD40-77	_				3			Os03g0625300	LOC_Os03g42710.1						
10759	_	OsWD40-78	_				3			Os03g0625900	LOC_Os03g42770.1				GO:0003676 - nucleic acid binding, GO:0060321 - acceptance of pollen, GO:0009553 - embryo sac development, GO:0005730 - nucleolus, GO:0030529 - ribonucleoprotein complex, GO:0009793 - embryonic development ending in seed dormancy		
10760	_	OsWD40-79, OsMSI1, WD40-79, MSI1	_				3	CT829253. Q10G81. a rice polycomb group (PcG) protein. a homolog of Arabidopsis PRC2. rice homolog of AtMSI1.	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0640100	LOC_Os03g43890.1				GO:0006281 - DNA repair, GO:0009507 - chloroplast, GO:0048366 - leaf development, GO:0009555 - pollen development, GO:0031507 - heterochromatin formation, GO:0008283 - cell proliferation, GO:0006310 - DNA recombination, GO:0016585 - chromatin remodeling complex, GO:0009793 - embryonic development ending in seed dormancy, GO:0045787 - positive regulation of cell cycle, GO:0009909 - regulation of flower development, GO:0006349 - genetic imprinting, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010214 - seed coat development, GO:0006351 - transcription, DNA-dependent, GO:0010026 - trichome differentiation		
10761	RGB1	OsWD40-80, RGbeta1	RICE G PROTEIN BETA SUBUNIT 1	heterotrimeric G protein beta 1 subunit, heterotrimeric G protein b-subunit 1, G protein beta subunit 1	RICE G PROTEIN BETA SUBUNIT 1		3	Q40687. X89737.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape	Os03g0669200	LOC_Os03g46650.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010154 - fruit development, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0004871 - signal transducer activity, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009845 - seed germination, GO:0009887 - organ morphogenesis, GO:0048527 - lateral root development, GO:0080008 - CUL4 RING ubiquitin ligase complex	TO:0000207 - plant height, TO:0000430 - germination rate, TO:0000639 - seed fertility, TO:0000391 - seed size, TO:0000397 - grain size	
10762	_	OsWD40-81, OsLST8, LST8	_				3	CT832450.		Os03g0681700	LOC_Os03g47780.2, LOC_Os03g47780.1				GO:0031932 - TORC2 complex, GO:0031931 - TORC1 complex, GO:0032956 - regulation of actin cytoskeleton organization, GO:0031929 - TOR signaling pathway		
10763	_	OsWD40-82	_				3			Os03g0685600	LOC_Os03g48090.1						
10764	_	OsWD40-83, WD40-83, OsCDT2, CDT2	_				3	LOC_Os03g49200.		Os03g0699100	LOC_Os03g49200.2, LOC_Os03g49200.1						
10765	_	OsWD40-84	_				3	Q9AUR8.		Os03g0711400	LOC_Os03g50340.1				GO:0006886 - intracellular protein transport, GO:0005198 - structural molecule activity, GO:0005886 - plasma membrane, GO:0030126 - COPI vesicle coat, GO:0016192 - vesicle-mediated transport		
10766	_	OsWD40-85	_				3	Q9AUR7.		Os03g0711500	LOC_Os03g50350.1				GO:0005198 - structural molecule activity, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane, GO:0016192 - vesicle-mediated transport, GO:0030126 - COPI vesicle coat		
10767	_	OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5	_	WD repeat domain 5			3	LOC_Os03g51550. a WD40 protein related to Arabidopsis WDR5. Rice, a model SD plant, contains two major flowering pathways: a conserved photoperiod pathway and a unique photoperiod-independent flowering-time pathway. OsWDR5a might not be involved in the photoperiod pathway (Jiang et al. 2018). chromatin-modifying complex. histone modification protein.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os03g0725400	LOC_Os03g51550.3, LOC_Os03g51550.2, LOC_Os03g51550.1				GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition, GO:0051568 - histone H3-K4 methylation, GO:0010229 - inflorescence development, GO:0042393 - histone binding, GO:0009790 - embryonic development, GO:0048188 - Set1C/COMPASS complex	TO:0000621 - inflorescence development trait, TO:0002759 - grain number, TO:0000137 - days to heading, TO:0006032 - panicle size, TO:0000557 - secondary branch number	PO:0001083 - inflorescence development stage 
10768	_	OsWD40-87	_				3			Os03g0735100	LOC_Os03g52470.1						
10769	_	OsWD40-88	_				3			Os03g0738000	LOC_Os03g52794.1						
10770	_	OsWD40-89	_				3			Os03g0738700	LOC_Os03g52870.1						
10771	_	OsWD40-90	_				3	LOC_Os03g53280.		Os03g0744650/Os03g0744675							
10772	_	OsWD40-91	_				3	CT832664.		Os03g0746600	LOC_Os03g53510.2						
10773	_	OsWD40-92	_				3			Os03g0746800	LOC_Os03g53530.1						
10774	_	OsWD40-93	_				3			Os03g0754900	LOC_Os03g54770.3, LOC_Os03g54770.2, LOC_Os03g54770.1						
10776	_	OsWD40-95	_				3			Os03g0831800	LOC_Os03g61630.2, LOC_Os03g61630.1				GO:0005730 - nucleolus		
10777	_	OsWD40-96	_				3			Os03g0851600	LOC_Os03g63470.1						
10778	_	OsWD40-97	_				3	AU162272, AU029581.	 Tolerance and resistance - Stress tolerance	Os03g0858400	LOC_Os03g64110.1					TO:0000432 - temperature response trait	
10779	_	OsWD40-98	_				3			Os03g0861000	LOC_Os03g64310.1						
10780	_	OsWD40-99	_				4			Os04g0195000	LOC_Os04g11880.3, LOC_Os04g11880.2, LOC_Os04g11880.1				GO:0009630 - gravitropism, GO:0008270 - zinc ion binding, GO:0016192 - vesicle-mediated transport, GO:0006886 - intracellular protein transport		
10781	_	OsWD40-100	_				4			Os04g0417800	LOC_Os04g34080.1						
10782	_	OsWD40-101	_				4			Os04g0481600	LOC_Os04g40560.1						
10783	_	OsWD40-102	_				4			Os04g0507900	LOC_Os04g42880.1						
10784	_	OsWD40-103	_				4								GO:0009908 - flower development, GO:0003697 - single-stranded DNA binding, GO:0009790 - embryonic development		
10785	_	OsWD40-104	_				4			Os04g0529400	LOC_Os04g44700.2, LOC_Os04g44700.1						
10786	_	OsWD40-105	_				4			Os04g0555400							
10787	_	OsWD40-106	_				4			Os04g0568400	LOC_Os04g48010.2, LOC_Os04g48010.1						
10788	_	OsWD40-107	_				4			Os04g0572700	LOC_Os04g48375.1						
10789	_	OsWD40-108	_				4			Os04g0592700	LOC_Os04g50660.1				GO:0005730 - nucleolus, GO:0032040 - small-subunit processome, GO:0006364 - rRNA processing, GO:0009880 - embryonic pattern specification, GO:0009793 - embryonic development ending in seed dormancy, GO:0051301 - cell division		
10790	_	OsWD40-109, WD40-109, OsCDC20, CDC20	_				4	CT834267, CT834269, CT834268, CT834266. GO:0097027: ubiquitin-protein transferase activator activity. GO:1904668: positive regulation of ubiquitin protein ligase activity.		Os04g0599800	LOC_Os04g51110.2, LOC_Os04g51110.1				GO:0010997 - anaphase-promoting complex binding		
10791	_	OsWD40-110, OsFbox233, Os_F0069	_	F-box protein 233			4	LOC_Os04g52870. Os_F0069 in Hua et al. 2011.		Os04g0619700	LOC_Os04g52870.1				GO:0016036 - cellular response to phosphate starvation		
10792	_	OsWD40-111	_				4			Os04g0677650	LOC_Os04g58130.1				GO:0016036 - cellular response to phosphate starvation		
10793	_	OsWD40-112	_				4			Os04g0678300	LOC_Os04g58180.1						
10794	_	OsWD40-113	_				5	CT832718.		Os05g0144100	LOC_Os05g05210.2, LOC_Os05g05210.1						
10796	_	OsWD40-115	_				5			Os05g0240200	LOC_Os05g15040.4, LOC_Os05g15040.3, LOC_Os05g15040.2, LOC_Os05g15040.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
10797	_	OsWD40-116, OseIF3i, eIF3i, EIF3I	_	"EUKARYOTIC INITIATION FACTOR 3I, \"eukaryotic translation initiation factor 3, subunit i\""			5	CT829116. LOC_Os05g16660.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0256000	LOC_Os05g16660.3, LOC_Os05g16660.2, LOC_Os05g16660.1				GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0003743 - translation initiation factor activity, GO:0001731 - formation of translation preinitiation complex, GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0080008 - CUL4 RING ubiquitin ligase complex		
10798	_	OsWD40-117	_				5			Os05g0299300	LOC_Os05g23430.2						
10800	_	OsWD40-119	_				5	CT829855, CT829853, CT829854.		Os05g0407200	LOC_Os05g33710.1						
10801	_	OsWD40-120	_				5	CT832035.		Os05g0519500	LOC_Os05g44320.3, LOC_Os05g44320.2, LOC_Os05g44320.1						
10802	_	OsWD40-121	_				5			Os05g0543300	LOC_Os05g46570.1						
10803	_	OsWD40-122, OsRACK1B, RACK1B	_	G-protein beta-subunit-like polypeptide, receptor for activated C kinase 1B			5	CT833917. Q6L4F8. D29704.		Os05g0552300	LOC_Os05g47890.1				GO:0046686 - response to cadmium ion, GO:0005730 - nucleolus, GO:0009507 - chloroplast, GO:0022626 - cytosolic ribosome, GO:0048364 - root development, GO:0048367 - shoot development, GO:0004871 - signal transducer activity		
10804	_	OsWD40-123, OsSPA1	_	SPA1-like			5	LOC_Os05g49590. one of rice SPA orthologs.		Os05g0571000	LOC_Os05g49590.2, LOC_Os05g49590.1				GO:0016772 - transferase activity, transferring phosphorus-containing groups		
10805	_	OsWD40-124	_				6			Os06g0131100	LOC_Os06g04040.3, LOC_Os06g04040.2, LOC_Os06g04040.1				GO:0048700 - acquisition of desiccation tolerance, GO:0009790 - embryonic development		
10806	_	OsWD40-125	_	beta prime COP coatomer protein			6	Q5VQ78. C26456, AU164984.	 Tolerance and resistance - Stress tolerance	Os06g0143900	LOC_Os06g05180.4, LOC_Os06g05180.3				GO:0006886 - intracellular protein transport, GO:0030663 - COPI coated vesicle membrane, GO:0030117 - membrane coat, GO:0005198 - structural molecule activity, GO:0016192 - vesicle-mediated transport	TO:0000432 - temperature response trait	
10808	_	OsWD40-127	_				6			Os06g0238700	LOC_Os06g13140.1						
10809	_	OsWD40-128	_				6			Os06g0300800	LOC_Os06g19660.2, LOC_Os06g19660.1				GO:0009965 - leaf morphogenesis, GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA, GO:0000932 - cytoplasmic mRNA processing body, GO:0005829 - cytosol, GO:0005634 - nucleus		
10810	_	OsWD40-129	_				6			Os06g0502600	LOC_Os06g30680.1						
10811	_	OsWD40-130	_				6			Os06g0598900	LOC_Os06g39760.1						
10812	_	OsWD40-131	_				6			Os06g0644600	LOC_Os06g43690.1						
10813	_	OsWD40-132	_				6			Os06g0649500	LOC_Os06g44030.2, LOC_Os06g44030.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
10814	_	OsWD40-133	_				6			Os06g0653800	LOC_Os06g44370.1						
10815	_	OsWD40-134	_				6			Os06g0678650	LOC_Os06g46475.1				GO:0005739 - mitochondrion		
10816	_	OsWD40-135	_				6			Os06g0724500	LOC_Os06g50880.1						
10817	_	OsWD40-136	_				7	LOC_Os07g03160.		Os07g0123700	LOC_Os07g03160.1						
10819	_	OsWD40-138, OsSERL7	_	SERK-like gene 7			7			Os07g0224900	LOC_Os07g12320.1				GO:0005730 - nucleolus, GO:0006364 - rRNA processing		
10820	_	OsWD40-139	_				7			Os07g0246300	LOC_Os07g14280.1				GO:0005730 - nucleolus		
10821	_	OsWD40-140	_				7			Os07g0252000	LOC_Os07g14830.1						
10822	_	OsWD40-141	_				7			Os07g0405100	LOC_Os07g22220.1						
10823	_	OsWD40-142	_				7			Os07g0408100	LOC_Os07g22534.4, LOC_Os07g22534.3, LOC_Os07g22534.2, LOC_Os07g22534.1						
10824	_	OsWD40-143	_				7			Os07g0435400	LOC_Os07g25440.2, LOC_Os07g25440.1				GO:0006364 - rRNA processing, GO:0051726 - regulation of cell cycle, GO:0005634 - nucleus		
10825	_	OsWD40-144, WD40-144, OsWDR5b, WDR5b	_				7	LOC_Os07g38430. a WD40 protein related to Arabidopsis WDR5. 		Os07g0572000	LOC_Os07g38430.1						
10826	_	OsWD40-145	_				7			Os07g0588500	LOC_Os07g39950.1				GO:0007094 - mitotic cell cycle spindle assembly checkpoint, GO:0000776 - kinetochore, GO:0009524 - phragmoplast		
10827	_	OsWD40-146	_				7	CT832145.		Os07g0589400	LOC_Os07g40030.3, LOC_Os07g40030.2, LOC_Os07g40030.1						
10828	_	OsWD40-147	_				7	CT831874.		Os07g0600400	LOC_Os07g40930.1				GO:0005730 - nucleolus, GO:0042254 - ribosome biogenesis		
10829	_	OsWD40-148	_				7	AB042102.		Os07g0657200	LOC_Os07g46370.1				GO:0016020 - membrane		
10830	_	OsWD40-149	_				7			Os07g0660700	LOC_Os07g46620.1						
10831	_	OsWD40-150	_				7	LOC_Os07g47410.			LOC_Os07g47410						
10832	_	OsWD40-151	_				7	LOC_Os07g49090.			LOC_Os07g49090						
10833	_	OsWD40-152	_				8			Os08g0108300	LOC_Os08g01690.1						
10837	_	OsWD40-156	_				8			Os08g0176800	LOC_Os08g07960.2, LOC_Os08g07960.1				GO:0080008 - CUL4 RING ubiquitin ligase complex		
10838	_	OsWD40-157	_				8			Os08g0282500	LOC_Os08g18150.1						
10839	_	OsWD40-158	_				8			Os08g0285200	LOC_Os08g18880.1						
10840	_	OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I	_	"EUKARYOTIC INITIATION FACTOR 3I, \"eukaryotic translation initiation factor 3, subunit i\""			8	CT833823. a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21660.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0308100	LOC_Os08g21660.2, LOC_Os08g21660.1				GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0001731 - formation of translation preinitiation complex, GO:0003743 - translation initiation factor activity, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0080008 - CUL4 RING ubiquitin ligase complex		
10842	_	OsWD40-161	_				8			Os08g0493900	LOC_Os08g38570.1						
10844	_	OsWD40-163	_				8			Os08g0531200	LOC_Os08g41900.1						
10846	_	OsWD40-165	_				9	Q0J3D9.		Os09g0127800	LOC_Os09g04110.2, LOC_Os09g04110.1				GO:0030126 - COPI vesicle coat, GO:0016192 - vesicle-mediated transport, GO:0005198 - structural molecule activity, GO:0005886 - plasma membrane, GO:0006886 - intracellular protein transport		
10847	_	OsWD40-166	_				9	LOC_Os09g06560.	 Tolerance and resistance - Stress tolerance	Os09g0241100	LOC_Os09g06560.1						
10848	_	OsWD40-167	_				9			Os09g0242300	LOC_Os09g06680.1						
10849	_	OsWD40-168	_				9			Os09g0267500	LOC_Os09g09470.2, LOC_Os09g09470.1				GO:0032467 - positive regulation of cytokinesis, GO:0009555 - pollen development, GO:0009553 - embryo sac development, GO:0000919 - cell plate formation, GO:0060236 - regulation of mitotic spindle organization, GO:0005828 - kinetochore microtubule		
10850	_	OsWD40-169	_				9			Os09g0296900	LOC_Os09g12550.1						
10851	_	OsWD40-170	_				9			Os09g0298400	LOC_Os09g12710.1				GO:0010267 - production of ta-siRNAs involved in RNA interference		
10852	_	OsWD40-171	_				9			Os09g0363600	LOC_Os09g19900.1						
10853	_	OsWD40-172	_				9			Os09g0477800	LOC_Os09g30090.1						
10854	_	OsWD40-173, WD40-173, OsMed4_1, Med4_1	_	Mediator 4_1			9	LOC_Os09g36900.		Os09g0540600	LOC_Os09g36900.1				GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0005634 - nucleus		
10855	_	OsWD40-174	_				9	Q652L2.		Os09g0567700	LOC_Os09g39420.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0016568 - chromatin modification, GO:0006351 - transcription, DNA-dependent		
10856	_	OsWD40-175	_				10			Os10g0104500	LOC_Os10g01540.2, LOC_Os10g01540.1						
10857	_	OsWD40-176	_				10	CT829300.		Os10g0464100	LOC_Os10g32710.3, LOC_Os10g32710.2, LOC_Os10g32710.1						
10858	_	OsWD40-177	_				10			Os10g0465000	LOC_Os10g32770.3, LOC_Os10g32770.2, LOC_Os10g32770.1						
10859	_	OsWD40-178, OsPUB72	_	plant U-box-containing protein 72, U-box protein 72			10	Q9AV81. class VI PUB protein (U-box + WD40). LOC_Os10g32880. EST: CB64800, CB64800, CB65460, CB65461, C28936, CB64479, CB64479, CB64050, CB63621, CB63622, CB63994, CB64625, CB64625, CB630643, CB630644, CB633728, CB633729, CA753148, CB684534, CB684533, CB684504, AU063371, AU063355, AU101014, CR288259, AU068591, BI81131, CR288238, AU166674, AU222544, BQ908380, AU092951, CF308939, CF308938.		Os10g0466300	LOC_Os10g32880.1				GO:0046686 - response to cadmium ion, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0042742 - defense response to bacterium, GO:0009507 - chloroplast, GO:0005730 - nucleolus, GO:0005618 - cell wall		
10860	_	OsWD40-179, OsKTN80a	_	katanin P80a, Katanin regulatory subunit P80a			10	a katanin P80 ortholog. a microtubule-severing enzyme.	 Vegetative organ - Root	Os10g0494800	LOC_Os10g35200.1				GO:0008352 - katanin complex, GO:0051013 - microtubule severing	TO:0000227 - root length	
10861	_	OsWD40-180	_				10			Os10g0544500	LOC_Os10g39760.1						
10862	_	OsWD40-181	_				11	CT830828.		Os11g0132600	LOC_Os11g03780.2, LOC_Os11g03780.1				GO:0045493 - xylan catabolic process, GO:0046373 - L-arabinose metabolic process, GO:0009044 - xylan 1,4-beta-xylosidase activity, GO:0046556 - alpha-N-arabinofuranosidase activity, GO:0005773 - vacuole, GO:0009505 - plant-type cell wall, GO:0048046 - apoplast		
10863	_	OsWD40-182	_				11	DQ491004.		Os11g0134500	LOC_Os11g03990.1						
10864	_	OsWD40-183, OsSTA251	_				11	LOC_Os11g07480. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0176000	LOC_Os11g07480.1						PO:0009066 - anther 
10865	_	OsWD40-184, OsFbox571, Os_F0380	_	F-box protein 571			11	LOC_Os11g07970. Os_F0380 in Hua et al. 2011.		Os11g0182400	LOC_Os11g07970.1						
10866	_	OsWD40-185, OsSTA253	_				11	LOC_Os11g08400. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0187100	LOC_Os11g08400.1						PO:0009066 - anther 
10867	RLCK316	OsWD40-186, OsRLCK316	RECEPTOR-LIKE CYTOPLASMIC KINASE 316	Receptor-like Cytoplasmic Kinase 316	RECEPTOR-LIKE CYTOPLASMIC KINASE 316		11	LOC_Os11g10640.		Os11g0212300	LOC_Os11g10640.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
10868	_	OsWD40-187	_				11			Os11g0212900					GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
10869	RLCK318	OsWD40-188, OsRLCK318	RECEPTOR-LIKE CYTOPLASMIC KINASE 318	Receptor-like Cytoplasmic Kinase 318	RECEPTOR-LIKE CYTOPLASMIC KINASE 318		11	LOC_Os11g10710.	 Seed	Os11g0213000	LOC_Os11g10710.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development	TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
10870	_	OsWD40-189	_				11			Os11g0594200	LOC_Os11g38170.2, LOC_Os11g38170.1						
10871	_	OsWD40-190	_				11			Os11g0610700	LOC_Os11g39650.1						
10872	_	OsWD40-191	_				11			Os11g0660400	LOC_Os11g43895.1						
10873	_	OsWD40-192	_				12	CT830828.		Os12g0129400	LOC_Os12g03540.1						
10874	_	OsWD40-193, RIP1	_	RICE IMMATURE POLLEN 1		rip1	12	DQ491004.		Os12g0132400	LOC_Os12g03822.2, LOC_Os12g03822.1				GO:0005634 - nucleus		
10875	_	OsWD40-194	_				12			Os12g0165000	LOC_Os12g06810.4, LOC_Os12g06810.3, LOC_Os12g06810.2, LOC_Os12g06810.1				GO:0010311 - lateral root formation		
10876	_	OsWD40-195	_				12			Os12g0172500	LOC_Os12g07450.3, LOC_Os12g07450.2, LOC_Os12g07450.1						
10877	_	OsWD40-196, OsSTA276	_				12	LOC_Os12g07874. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0178633	LOC_Os12g07874.1						PO:0009066 - anther 
10878	_	OsWD40-197	_				12	CT832923.		Os12g0294100	LOC_Os12g19590.3, LOC_Os12g19590.2, LOC_Os12g19590.1						
10879	_	OsWD40-198	_				12			Os12g0594000	LOC_Os12g40260.1						
10880	_	OsWD40-199	_				12			Os12g0609800	LOC_Os12g41620.1						
10881	_	OsWD40-200	_				12			Os12g0615900	LOC_Os12g42150.1				GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0005730 - nucleolus		
10882	_	OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1	_	small subunit of the transcription factor IIA located on chromosome 1, Gamma subunit of transcription factor II A			1	CB097192. FJ811371-FJ811411 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901774-DQ901802 (wild rice species). EF069843-EF069903 (O. sativa and wild rice species). JQ415824-JQ415867 (wild rice species).	 Tolerance and resistance - Disease resistance,  Other	Os01g0970500	LOC_Os01g73890.1				GO:0002237 - response to molecule of bacterial origin, GO:0005672 - transcription factor TFIIA complex, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006367 - transcription initiation from RNA polymerase II promoter, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
10883	_	CHR703	_	CHD-related gene 703			1	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein		Os01g0881000	LOC_Os01g65850.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0008026 - ATP-dependent helicase activity, GO:0005634 - nucleus, GO:0005524 - ATP binding		
10884	_	CHR723	_	CHD-related gene 723			6	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein									
10885	_	CHR744	_	CHD-related gene 744			2	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein		Os02g0110700	LOC_Os02g02050.1						
10886	_	OsTrx15	_	Thioredoxin 15			4	Q0J9V5, Q0J9V6.	 Biochemical character	Os04g0629500	LOC_Os04g53740.1				GO:0006662 - glycerol ether metabolic process, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity		
10887	RMC	OsRMC, OsRLK, OsDUF26, DUF26	ROOT MEANDER CURLING	root meander curling, receptor-like protein RMC, domain of unknown function 26			4	AAL87185. LOC_Os04g56430. GO:1901001: negative regulation of response to salt stress.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0659300	LOC_Os04g56430.1				GO:0002238 - response to molecule of fungal origin, GO:0016301 - kinase activity, GO:0001966 - thigmotaxis, GO:0009651 - response to salt stress, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009737 - response to abscisic acid stimulus, GO:0046688 - response to copper ion, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050954 - sensory perception of mechanical stimulus, GO:0050832 - defense response to fungus, GO:0010106 - cellular response to iron ion starvation	TO:0006001 - salt tolerance, TO:0002710 - root shape, TO:0000021 - copper sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000224 - iron sensitivity	
10888	IDS1	OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2	INDETERMINATE SPIKELET 1	OsINDETERMINATE SPIKELET 1, INDETERMINATE SPIKELET1, APETALA2/ethylene-responsive element binding protein 33, APETALA2-2		osids1, ids1-1	3	LOC_Os03g60430. AP2-2 in Dai et al. 2016.	 Reproductive organ - Heading date,  Reproductive organ - Inflorescence,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os03g0818800	LOC_Os03g60430.2, LOC_Os03g60430.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:2000028 - regulation of photoperiodism, flowering, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0010076 - maintenance of floral meristem identity, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000397 - grain size, TO:0000137 - days to heading, TO:0000373 - inflorescence anatomy and morphology trait, TO:0006001 - salt tolerance, TO:0000650 - lemma length, TO:0000382 - 1000-seed weight, TO:0000622 - flower development trait, TO:0002616 - flowering time	PO:0007601 - floral organ meristem development stage , PO:0007615 - flower development stage 
10889	MIR172A	OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a	MICRORNA172A	rice microRNA172a			9	miRBASE accession: MI0001139. AY551254. LM379345. TO:0000869: glume anatomy and morphology trait.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0048506 - regulation of timing of meristematic phase transition, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus	TO:0000420 - fertility related trait, TO:0000074 - blast disease, TO:0006029 - glume number, TO:0000650 - lemma length	PO:0000229 - flower meristem , PO:0025395 - floral organ 
10890	MIR172B	OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b	MICRORNA172B	rice microRNA172b			1	miRBASE accession: MI0001140. AY551255. LM379346.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000650 - lemma length, TO:0000429 - salt sensitivity	
10891	MIR172C	OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c	MICRORNA172C	rice microRNA172c			7	miRBASE accession: MI0001141. AY551256. LM379347.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000420 - fertility related trait	
10892	MIR172D	OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d	MICRORNA172D	rice microRNA172d			2	miRBASE accession: MI0001154. AY551253. LM379357, LM383079. 	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000420 - fertility related trait	
10893	IAA1	OsIAA1, OsIAA4	_	Aux/IAA protein 1			1	OsIAA4 in Nakamura et al. 2006. an early auxin response gene.		Os01g0178500 	LOC_Os01g08320.1				GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity	
10894	IAA2	OsIAA2	_	Aux/IAA protein 2			1	LOC_Os01g09450.	 Tolerance and resistance - Stress tolerance	Os01g0190300 	LOC_Os01g09450.2, LOC_Os01g09450.1				GO:0009629 - response to gravity	TO:0002693 - gravity response trait	
10895	IAA4	OsIAA4	_	Aux/IAA protein 4			1			Os01g0286900 	LOC_Os01g18360.2, LOC_Os01g18360.1						
10896	IAA5	OsIAA5	_	Aux/IAA protein 5			1			Os01g0675700	LOC_Os01g48444.1				GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity	
10897	IAA6	OsIAA6	_	Aux/IAA protein 6			1	LOC_Os01g53880. Q8LQ74.	 Tolerance and resistance - Stress tolerance	Os01g0741900	LOC_Os01g53880.7, LOC_Os01g53880.6, LOC_Os01g53880.5, LOC_Os01g53880.4, LOC_Os01g53880.3, LOC_Os01g53880.2, LOC_Os01g53880.1				GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0006417 - regulation of translation		
10898	IAA7	OsIAA7	_	Aux/IAA protein 7			2	Q6H543.		Os02g0228900 	LOC_Os02g13520.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus		
10899	IAA8	OsIAA8	_	Aux/IAA protein 8			2	LOC_Os02g49160. Q6Z5M0.	 Other	Os02g0723400 	LOC_Os02g49160.1				GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity	
10900	IAA9	OsIAA9, OsIAA2	_	Aux/IAA protein 9			2	LOC_Os02g56120. OsIAA2 in Remington et al., 2004 and Nakamura et al. 2006. BAF10351.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0805100 	LOC_Os02g56120.3, LOC_Os02g56120.2, LOC_Os02g56120.1				GO:0009629 - response to gravity, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus	TO:0000163 - auxin sensitivity, TO:0002693 - gravity response trait, TO:0000227 - root length, TO:0000173 - ethylene sensitivity	
10901	IAA10	OsIAA10, OsIAA5	_	Aux/IAA protein 10			2	Q0DWF2. D15870. OsIAA5 in Nakamura et al. 2006. Auxin-induced protein. GO:1990110: callus formation.		Os02g0817600 	LOC_Os02g57250.2, LOC_Os02g57250.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway	TO:0000428 - callus induction	PO:0005052 - plant callus 
10902	IAA13	OsIAA13, OsIAA1, OsiIAA1	_	Aux/IAA protein 13, Aux/IAA protein 1		Osiaa13	3	AJ251791. AJ563599. A2XLV9, Q10D34. OsIAA1 in Thakur et al. 2001 and Nakamura et al. 2006. LOC_Os03g53150.	 Vegetative organ - Root	Os03g0742900	LOC_Os03g53150.2, LOC_Os03g53150.1				GO:0009630 - gravitropism, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0010102 - lateral root morphogenesis, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway		
10903	IAA14	OsIAA14, AUX/IAA14, OsAUX/IAA14	_	Aux/IAA protein 14			3	LOC_Os03g58350.	 Tolerance and resistance - Stress tolerance	Os03g0797800 	LOC_Os03g58350.1				GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway	TO:0000259 - heat tolerance	
10904	IAA15	OsIAA15	_	Aux/IAA protein 15			5			Os05g0178600	LOC_Os05g08570.6, LOC_Os05g08570.5, LOC_Os05g08570.4, LOC_Os05g08570.3, LOC_Os05g08570.2, LOC_Os05g08570.1				GO:0006351 - transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent		
10905	IAA16	OsIAA16	_	Aux/IAA protein 16			5			Os05g0186900	LOC_Os05g09480.1				GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10906	IAA17	OsIAA17	_	Aux/IAA protein 17			5			Os05g0230700 	LOC_Os05g14180.2, LOC_Os05g14180.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent		
10907	IAA18	OsIAA18	_	Aux/IAA protein 18			5		 Tolerance and resistance - Stress tolerance	Os05g0523300 	LOC_Os05g44810.3, LOC_Os05g44810.2, LOC_Os05g44810.1				GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
10908	IAA19	OsIAA19	_	Aux/IAA protein 19, Auxin-responsive Aux/IAA gene family member 19			5	LOC_Os05g48590.		Os05g0559400	LOC_Os05g48590.1				GO:0009734 - auxin mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10909	IAA21	OsIAA21	_	Aux/IAA protein 21			6			Os06g0335500 	LOC_Os06g22870.2, LOC_Os06g22870.1						
10910	IAA22	OsIAA22	_	Aux/IAA protein 22			6	LOC_Os06g24850. Q69TU6.	 Other	Os06g0355300	LOC_Os06g24850.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus		
10911	IAA24	OsIAA24	_	Aux/IAA protein 24			7	LOC_Os07g08460. Q6ZL5.	 Other	Os07g0182400	LOC_Os07g08460.2, LOC_Os07g08460.1				GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus	TO:0002672 - auxin content, TO:0000163 - auxin sensitivity	
10912	IAA25	OsIAA25	_	Aux/IAA protein 25			8	LOC_Os08g01780.	 Tolerance and resistance - Stress tolerance	Os08g0109400 	LOC_Os08g01780.2, LOC_Os08g01780.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009629 - response to gravity, GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus	TO:0002693 - gravity response trait	
10913	IAA26	OsIAA26	_	Aux/IAA protein 26			9		 Vegetative organ - Root	Os09g0527700 	LOC_Os09g35870.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009723 - response to ethylene stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus	TO:0000173 - ethylene sensitivity, TO:0000227 - root length, TO:0000163 - auxin sensitivity	
10914	IAA27	OsIAA27	_	Aux/IAA protein 27			11	LOC_Os11g11410.		Os11g0221000 	LOC_Os11g11410.4, LOC_Os11g11410.3, LOC_Os11g11410.2, LOC_Os11g11410.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway		
10915	IAA28	OsIAA28	_	Aux/IAA protein 28			11			Os11g0221200	LOC_Os11g11420.1				GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
10916	IAA29	OsIAA29, OsEnS-141	_	Aux/IAA protein 29, endosperm-specific gene 141			11	LOC_Os11g11430.		Os11g0221300	LOC_Os11g11430.2, LOC_Os11g11430.1				GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10917	IAA30	OsIAA30	_	Aux/IAA protein 30			12			Os12g0601300	LOC_Os12g40890.1				GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
10918	_	OsRAI1, RAI1, OsbHLH003, bHLH003, bHLH3	_	Rac Immunity1, Rac Immunity 1, basic helix-loop-helix protein 003			3	HQ858849. bHLH transcription factor.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0135700	LOC_Os03g04310.2, LOC_Os03g04310.1				GO:0009409 - response to cold	TO:0000112 - disease resistance, TO:0000303 - cold tolerance	
10919	_	OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9	_	chitin elicitor receptor kinase 1, chitinelicitor receptor kinase-1, LysM receptor-like kinase 9		oscerk1, Oscerk1	8	GO:0035556:intracellular signal transduction. GO:0061057: peptidoglycan recognition protein signaling pathway. GO:0036377: arbuscular mycorrhizal association. rice NFR1/LYK3 ortholog.	 Tolerance and resistance - Disease resistance	Os08g0538300	LOC_Os08g42580.4, LOC_Os08g42580.1				GO:0005886 - plasma membrane, GO:0019199 - transmembrane receptor protein kinase activity, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0045089 - positive regulation of innate immune response, GO:0050832 - defense response to fungus, GO:0050850 - positive regulation of calcium-mediated signaling, GO:0032491 - detection of molecule of fungal origin, GO:0009603 - detection of symbiotic fungus, GO:0010200 - response to chitin, GO:0042742 - defense response to bacterium, GO:0043410 - positive regulation of MAPKKK cascade, GO:0052033 - pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity, GO:0052064 - induction by symbiont of defense-related host reactive oxygen species production, GO:0009877 - nodulation, GO:0005783 - endoplasmic reticulum, GO:0009608 - response to symbiont, GO:0009609 - response to symbiotic bacterium, GO:0032494 - response to peptidoglycan, GO:0019722 - calcium-mediated signaling, GO:0009610 - response to symbiotic fungus, GO:0009817 - defense response to fungus, incompatible interaction	TO:0000315 - bacterial disease resistance, TO:0000112 - disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance	
10920	_	OsLysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2	_	LysM receptor-like kinase 1, LysM-type receptor-like kinase4, NFR5/NFP ortholog		Osnfr5, osnfr5	2	LOC_Os02g09960. a unique rice homolog of LjNFR5/MtNFP.  the closest rice ortholog of the Nod factor receptor component NFR5 from Lotus japonicas. GO:0036377: arbuscular mycorrhizal association.		Os02g0193000	LOC_Os02g09960.1				GO:0050850 - positive regulation of calcium-mediated signaling, GO:0009610 - response to symbiotic fungus, GO:0009877 - nodulation, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0032491 - detection of molecule of fungal origin		
10921	_	OsLysM-RLK2, OsLYK5	_	LysM receptor-like kinase 2, LysM-type receptor-like kinase5			3			Os03g0233300	LOC_Os03g13080.1						
10922	_	OsLysM-RLK3, OsLYK1	_	LysM receptor-like kinase 3, LysM-type receptor-like kinase1			1			Os01g0546000	LOC_Os01g36550.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
10923	_	OsLysM-RLK4	_	LysM receptor-like kinase 4			1			Os01g0741200	LOC_Os01g53840.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
10924	_	OsLysM-RLK5, OsLYK2	_	LysM receptor-like kinase 5, LysM-type receptor-like kinase2			6			Os06g0625300	LOC_Os06g41980.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
10925	_	OsLysM-RLK6, OsLYK3	_	LysM receptor-like kinase 6, LysM-type receptor-like kinase3			6			Os06g0625200	LOC_Os06g41960.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
10926	_	OsLysM-RLK7, OsLYK6	_	LysM receptor-like kinase 7, LysM-type receptor-like kinase6			11			Os11g0557500	LOC_Os11g35330.1				GO:0016998 - cell wall macromolecule catabolic process, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
10927	RLCK330	OsLysM-RLK8, OsRLCK330	RECEPTOR-LIKE CYTOPLASMIC KINASE 330	LysM receptor-like kinase 8	RECEPTOR-LIKE CYTOPLASMIC KINASE 330		11	LOC_Os11g34624.		Os11g0549300	LOC_Os11g34624.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0005524 - ATP binding		
10928	RLCK276	OsLysM-RLK10, OsRLCK276	RECEPTOR-LIKE CYTOPLASMIC KINASE 276	LysM receptor-like kinase 10, Receptor-like Cytoplasmic Kinase 276	RECEPTOR-LIKE CYTOPLASMIC KINASE 276		9	AB510402. D7UPN3. LOC_Os09g33630.		Os09g0511000	LOC_Os09g33630.3, LOC_Os09g33630.2, LOC_Os09g33630.1				GO:0008061 - chitin binding, GO:0006952 - defense response, GO:0010200 - response to chitin, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0043621 - protein self-association		
10929	_	OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2	_	basic helix-loop-helix protein 001, Inducer of CBF expression 2	_		1	HQ858878. bHLH transcription factor. a rice homolog of Arabidopsis ICE (inducer of CBF expression). orthologues of AtICE1.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0928000	LOC_Os01g70310.1, LOC_Os01g70310.2				GO:0009409 - response to cold, GO:0009628 - response to abiotic stimulus	TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait	PO:0009010 - seed 
10930	_	OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1	_	basic helix-loop-helix protein 002, Inducer of CBF expression 1	_	osbhlh002-1	11	OsICE1 is a master transcription factor of the cold stress signaling. a rice homolog of Arabidopsis ICE (inducer of CBF expression). orthologues of AtICE1.	 Tolerance and resistance - Stress tolerance	Os11g0523700	LOC_Os11g32100.1				GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0010440 - stomatal lineage progression, GO:0050826 - response to freezing, GO:0009631 - cold acclimation	TO:0000303 - cold tolerance, TO:0006003 - oligosaccharide content	PO:0009010 - seed 
10931	_	OsbHLH004	_	basic helix-loop-helix protein 004	_		10			Os10g0544200	LOC_Os10g39750.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
10932	_	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35	_	basic helix-loop-helix protein 006, Transcription factor bHLH35	_		4	AB040744. BF889463. bHLH35 in Sim et al. 2018.	 Tolerance and resistance - Stress tolerance	Os04g0301500	LOC_Os04g23550.2, LOC_Os04g23550.1				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
10933	_	OsbHLH155	_	basic helix-loop-helix protein 155	_		6			Os06g0724800	LOC_Os06g50900.1				GO:0005634 - nucleus		
10934	_	OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728	_	coronatine insensitive 1a, CORONATINE INSENSITIVE1, coronatine insensitive 1			1	AY168645. DQ028826. a component of the SCF E3 ubiquitin ligase complex. an F-box protein.	 Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0853400	LOC_Os01g63420.1, LOC_Os01g63420.3, LOC_Os01g63420.2				GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009611 - response to wounding, GO:0009641 - shade avoidance, GO:0009625 - response to insect, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0019005 - SCF ubiquitin ligase complex, GO:0010218 - response to far red light, GO:0010118 - stomatal movement, GO:0009909 - regulation of flower development, GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus	TO:0000424 - brown planthopper resistance, TO:0000261 - insect damage resistance, TO:0000031 - silicon sensitivity, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000249 - leaf senescence	
10935	_	OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646	_	coronatine insensitive 1b, F-box protein 260		oscoi1b-1	5	a JA receptor.	 Vegetative organ - Leaf,  Reproductive organ - Pollination, fertilization, fertility,  Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0449500	LOC_Os05g37690.1				GO:0009754 - detection of jasmonic acid stimulus, GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0009625 - response to insect, GO:0009611 - response to wounding, GO:0009641 - shade avoidance, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009909 - regulation of flower development, GO:0010118 - stomatal movement, GO:0010150 - leaf senescence, GO:0010218 - response to far red light, GO:0019005 - SCF ubiquitin ligase complex, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000424 - brown planthopper resistance, TO:0000261 - insect damage resistance, TO:0000031 - silicon sensitivity, TO:0002712 - stay green trait, TO:0000657 - spikelet anatomy and morphology trait, TO:0000172 - jasmonic acid sensitivity, TO:0000298 - chlorophyll ratio, TO:0000396 - grain yield, TO:0000590 - grain weight, TO:0000180 - spikelet fertility, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
10936	NHX3	OsNHX3, OsNHX2, NHX2	NA+/H+ ANTIPORTER 3	Na+/H+ antiporter 3, NHX-type antiporter 3	NA+/H+ ANTIPORTER 3		5	AY360145. AB531433.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0148600	LOC_Os05g05590.1				GO:0016021 - integral to membrane, GO:0006885 - regulation of pH, GO:0015385 - sodium:hydrogen antiporter activity		
10938	AMT5;1	OsAMT5.1, OsAMT5;1	AMMONIUM TRANSPORTER 5;1	ammonium transporter 5 member 1	AMMONIUM TRANSPORTER 5;1		12		 Biochemical character	Os12g0105100	LOC_Os12g01420.1				GO:0008519 - ammonium transmembrane transporter activity, GO:0016021 - integral to membrane		
10939	AMT5;2	OsAMT5.2, OsAMT5;2	AMMONIUM TRANSPORTER 5;2	ammonium transporter 5 member 2	AMMONIUM TRANSPORTER 5;2		11		 Biochemical character	Os11g0105300	LOC_Os11g01410.1				GO:0016021 - integral to membrane, GO:0008519 - ammonium transmembrane transporter activity		
10941	_	GSK1, Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21	_	GSK3/SHAGGY-Like Kinase 1, glycogen synthase kinase3-like gene 1, GSK3/SHAGGY-Like Kinase 21, GSK3-like Kinase 1			1	LOC_Os01g10840. BAA92966. an orthologue of the Arabidopsis brassinosteroid insensitive 2 (BIN2). a BIN2 homolog. a GSK3/SHAGGY-like kinase clade II member.	 Tolerance and resistance - Stress tolerance	Os01g0205700	LOC_Os01g10840.1				GO:0046827 - positive regulation of protein export from nucleus, GO:0009742 - brassinosteroid mediated signaling, GO:0009825 - multidimensional cell growth, GO:0009965 - leaf morphogenesis, GO:0042538 - hyperosmotic salinity response, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0009733 - response to auxin stimulus, GO:0009729 - detection of brassinosteroid stimulus, GO:0005886 - plasma membrane	TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
10942	_	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2	_	GSK3/SHAGGY-Like Kinase 2, GSK3/SHAGGY-LIKE KINASE2, BRASSINOSTEROID-INSENSITIVE2, BRASSINOSTEROID-INSENSITIVE 2, GSK3/SHAGGY-Like Kinase 22, GSK3-like Kinase 7		OsGSK2typeA, OsGSK2typeB	5	LOC_Os05g11730. a GSK3/SHAGGY-like kinase clade II member. one of the Arabidopsis AtSK21 orthologs in rice. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. OsSK22/OsGSK7 in Thitisaksakul et al. 2017.	 Vegetative organ - Culm	Os05g0207500	LOC_Os05g11730.1				GO:0005829 - cytosol, GO:0009739 - response to gibberellin stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0009733 - response to auxin stimulus, GO:0046827 - positive regulation of protein export from nucleus, GO:0042538 - hyperosmotic salinity response, GO:0009742 - brassinosteroid mediated signaling, GO:0005886 - plasma membrane, GO:0009965 - leaf morphogenesis, GO:0009825 - multidimensional cell growth, GO:0005524 - ATP binding, GO:0009729 - detection of brassinosteroid stimulus	TO:0000544 - mesocotyl length, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity	
10943	_	GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, SKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8	_	GSK3/SHAGGY-Like Kinase 4, shaggy-like kinase etha, GSK3/SHAGGY-Like Kinase 24, GSK3-like Kinase 8			6	LOC_Os06g35530. Y13437. a rice ortholog of AtBIN2. a GSK3/SHAGGY-like kinase clade II member. OsSK24/OsGSK8 in Thitisaksakul et al. 2017.		Os06g0547900	LOC_Os06g35530.1				GO:0009729 - detection of brassinosteroid stimulus, GO:0005829 - cytosol, GO:0004674 - protein serine/threonine kinase activity, GO:0009965 - leaf morphogenesis, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding, GO:0042538 - hyperosmotic salinity response, GO:0005886 - plasma membrane, GO:0009742 - brassinosteroid mediated signaling, GO:0046827 - positive regulation of protein export from nucleus, GO:0009825 - multidimensional cell growth		
10945	ILI1	ILI1, OsbHLH154, OsILI1	INCREASED LEAF INCLINATION 1	Increased Leaf Inclination1, INCREASED LEAF INCLINATION 1, basic helix-loop-helix protein 154		ili1-D	4		 Seed - Morphological traits,  Character as QTL - Yield and productivity	Os04g0641700	LOC_Os04g54900.1				GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0010086 - embryonic root morphogenesis, GO:0005773 - vacuole, GO:0009640 - photomorphogenesis, GO:0009742 - brassinosteroid mediated signaling, GO:0009826 - unidimensional cell growth	TO:0002688 - leaf lamina joint bending, TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000397 - grain size	
10946	ILI2	ILI2, OsbHLH186, bHLH186	INCREASED LEAF INCLINATION 2	Increased Leaf Inclination 2, basic helix-loop-helix protein 186			11			Os11g0603000	LOC_Os11g39000.2, LOC_Os11g39000.1				GO:0009640 - photomorphogenesis, GO:0009826 - unidimensional cell growth, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0009741 - response to brassinosteroid stimulus, GO:0003677 - DNA binding		
10947	ILI3	OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2	INCREASED LEAF INCLINATION 3	Increased Leaf Inclination3, basic helix-loop-helix protein 153, BRASSINOSTEROID UPREGULATED 1-LIKE2, BRASSINOSTEROID UPREGULATED 1-LIKE 2			3	LOC_Os03g07540. Q10R47.	 Vegetative organ - Leaf	Os03g0171700	LOC_Os03g07540.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009733 - response to auxin stimulus, GO:0040008 - regulation of growth, GO:0046983 - protein dimerization activity	TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle	
10948	ILI5	ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170	INCREASED LEAF INCLINATION 5	Increased Leaf Inclination 5, POSITIVE REGULATOR OF GRAIN LENGTH 2, BRASSINOSTEROID UPREGULATED 1-LIKE1, BRASSINOSTEROID UPREGULATED1 LIKE1, basic helix-loop-helix protein 170		osbul1, OsBUL1D	2	LOC_Os02g51320. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0747900	LOC_Os02g51320.1				GO:0009409 - response to cold, GO:0009741 - response to brassinosteroid stimulus, GO:0051510 - regulation of unidimensional cell growth	TO:0000303 - cold tolerance, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000206 - leaf angle, TO:0000397 - grain size, TO:0002688 - leaf lamina joint bending, TO:0002677 - brassinosteroid sensitivity, TO:0002687 - cell elongation trait	
10949	ILI6	ILI6, OsILI6, PGL1, OsPGL1	INCREASED LEAF INCLINATION 6	Increased Leaf Inclination6, POSITIVE REGULATOR OF GRAIN LENGTH 1			3	Atypical basic helix-loop-helix (bHLH) protein	 Seed - Morphological traits,  Character as QTL - Yield and productivity	Os03g0171300	LOC_Os03g07510.2, LOC_Os03g07510.1				GO:0010086 - embryonic root morphogenesis, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0009640 - photomorphogenesis, GO:0005773 - vacuole, GO:0009742 - brassinosteroid mediated signaling, GO:0009826 - unidimensional cell growth	TO:0000397 - grain size, TO:0000734 - grain length, TO:0000590 - grain weight	
10950	ILI7	OsILI7, OsbHLH173, bHLH173	INCREASED LEAF INCLINATION 7	Increased Leaf Inclination7, basic helix-loop-helix protein 173			10		 Vegetative organ - Leaf	Os10g0404300	LOC_Os10g26460.1				GO:0005773 - vacuole, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0010086 - embryonic root morphogenesis, GO:0009826 - unidimensional cell growth, GO:0009742 - brassinosteroid mediated signaling, GO:0009640 - photomorphogenesis	TO:0000206 - leaf angle	
10951	_	Os IBH1, OsIBH1, IBH1, OsbHLH175, bHLH175	_	ILI1Binding bHLH Protein1, ILI1 Binding bHLH 1, basic helix-loop-helix protein 175			4	LOC_Os04g56500. Q7XR02.	 Vegetative organ - Leaf,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os04g0660100	LOC_Os04g56500.1				GO:0009742 - brassinosteroid mediated signaling, GO:0040008 - regulation of growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009741 - response to brassinosteroid stimulus, GO:0006351 - transcription, DNA-dependent, GO:0009826 - unidimensional cell growth	TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending	
10952	GELP1	OsGELP1, OsEST1	GDSL ESTERASE/LIPASE PROTEIN 1	GDSL esterase/lipase protein 1, esterase 1	GDSL ESTERASE/LIPASE PROTEIN 1		1		 Biochemical character	Os01g0214200	LOC_Os01g11570.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10953	GELP2	OsGELP2, OsGELP2a, OsGELP2b	GDSL ESTERASE/LIPASE PROTEIN 2	GDSL esterase/lipase protein 2	GDSL ESTERASE/LIPASE PROTEIN 2		1		 Biochemical character	Os01g0214600	LOC_Os01g11620.2, LOC_Os01g11620.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10954	GELP3	OsGELP3, OsGELP3a, OsGELP3b	GDSL ESTERASE/LIPASE PROTEIN 3	GDSL esterase/lipase protein 3	GDSL ESTERASE/LIPASE PROTEIN 3		1		 Biochemical character	Os01g0214800	LOC_Os01g11650.2, LOC_Os01g11650.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10955	GELP4	OsGELP4	GDSL ESTERASE/LIPASE PROTEIN 4	GDSL esterase/lipase protein 4	GDSL ESTERASE/LIPASE PROTEIN 4		1		 Biochemical character	Os01g0215000	LOC_Os01g11660.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10956	GELP5	OsGELP5, OsGELP5a, OsGELP5b	GDSL ESTERASE/LIPASE PROTEIN 5	GDSL esterase/lipase protein 5	GDSL ESTERASE/LIPASE PROTEIN 5		1		 Biochemical character	Os01g0215500	LOC_Os01g11700.2, LOC_Os01g11700.1				GO:0016787 - hydrolase activity		
10957	GELP6	OsGELP6	GDSL ESTERASE/LIPASE PROTEIN 6	GDSL esterase/lipase protein 6	GDSL ESTERASE/LIPASE PROTEIN 6		1		 Biochemical character	Os01g0215700	LOC_Os01g11710.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0006629 - lipid metabolic process		
10958	GELP7	OsGELP7	GDSL ESTERASE/LIPASE PROTEIN 7	GDSL esterase/lipase protein 7	GDSL ESTERASE/LIPASE PROTEIN 7		1		 Biochemical character	Os01g0216000	LOC_Os01g11730.1				GO:0006629 - lipid metabolic process, GO:0005618 - cell wall, GO:0016788 - hydrolase activity, acting on ester bonds		
10959	GELP8	OsGELP8	GDSL ESTERASE/LIPASE PROTEIN 8	GDSL esterase/lipase protein 8	GDSL ESTERASE/LIPASE PROTEIN 8		1		 Biochemical character	Os01g0216300	LOC_Os01g11740.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10960	GELP9	OsGELP9	GDSL ESTERASE/LIPASE PROTEIN 9	GDSL esterase/lipase protein 9	GDSL ESTERASE/LIPASE PROTEIN 9		1		 Biochemical character	Os01g0216400	LOC_Os01g11750.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process, GO:0005618 - cell wall		
10961	GELP10	OsGELP10	GDSL ESTERASE/LIPASE PROTEIN 10	GDSL esterase/lipase protein 10	GDSL ESTERASE/LIPASE PROTEIN 10		1		 Biochemical character	Os01g0216500	LOC_Os01g11760.1				GO:0016787 - hydrolase activity		
10962	GELP11	OsGELP11	GDSL ESTERASE/LIPASE PROTEIN 11	GDSL esterase/lipase protein 11	GDSL ESTERASE/LIPASE PROTEIN 11		1		 Biochemical character	Os01g0216900	LOC_Os01g11790.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10963	GELP13	OsGELP13	GDSL ESTERASE/LIPASE PROTEIN 13	GDSL esterase/lipase protein 13	GDSL ESTERASE/LIPASE PROTEIN 13		1		 Biochemical character	Os01g0223500	LOC_Os01g12381.1						
10964	GELP14	OsGELP14	GDSL ESTERASE/LIPASE PROTEIN 14	GDSL esterase/lipase protein 14	GDSL ESTERASE/LIPASE PROTEIN 14		1		 Biochemical character	Os01g0329900	LOC_Os01g22640.1				GO:0006629 - lipid metabolic process, GO:0009570 - chloroplast stroma, GO:0016788 - hydrolase activity, acting on ester bonds		
10965	GELP15	OsGELP15, OsGELP15a, OsGELP15b, OsGELP15c	GDSL ESTERASE/LIPASE PROTEIN 15	GDSL esterase/lipase protein 15	GDSL ESTERASE/LIPASE PROTEIN 15		1		 Biochemical character	Os01g0330100	LOC_Os01g22660.3, LOC_Os01g22660.2, LOC_Os01g22660.1				GO:0016787 - hydrolase activity		
10966	GELP16	OsGELP16, OsGELP16a, OsGELP16b	GDSL ESTERASE/LIPASE PROTEIN 16	GDSL esterase/lipase protein 16	GDSL ESTERASE/LIPASE PROTEIN 16		1		 Biochemical character	Os01g0331100	LOC_Os01g22780.2, LOC_Os01g22780.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10967	GELP17	OsGELP17	GDSL ESTERASE/LIPASE PROTEIN 17	GDSL esterase/lipase protein 17	GDSL ESTERASE/LIPASE PROTEIN 17		1		 Biochemical character	Os01g0612900	LOC_Os01g42730.1				GO:0016787 - hydrolase activity		
10968	GELP18	OsGELP18, OsGELP18a, OsGELP18b	GDSL ESTERASE/LIPASE PROTEIN 18	GDSL esterase/lipase protein 18	GDSL ESTERASE/LIPASE PROTEIN 18		1		 Biochemical character	Os01g0649200	LOC_Os01g46080.2, LOC_Os01g46080.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10969	GELP19	OsGELP19	GDSL ESTERASE/LIPASE PROTEIN 19	GDSL esterase/lipase protein 19	GDSL ESTERASE/LIPASE PROTEIN 19		1		 Biochemical character	Os01g0649400	LOC_Os01g46090.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10970	GELP20	OsGELP20, OsGELP20a, OsGELP20b, OsGELP20c	GDSL ESTERASE/LIPASE PROTEIN 20	GDSL esterase/lipase protein 20	GDSL ESTERASE/LIPASE PROTEIN 20		1		 Biochemical character	Os01g0649900	LOC_Os01g46120.3, LOC_Os01g46120.2, LOC_Os01g46120.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10971	GELP21	OsGELP21, OsGELP21a, OsGELP21b, OsGELP21c	GDSL ESTERASE/LIPASE PROTEIN 21	GDSL esterase/lipase protein 21	GDSL ESTERASE/LIPASE PROTEIN 21		1	AK062412.	 Biochemical character	Os01g0650200	LOC_Os01g46169.3, LOC_Os01g46169.2, LOC_Os01g46169.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10972	GELP22	OsGELP22	GDSL ESTERASE/LIPASE PROTEIN 22	GDSL esterase/lipase protein 22	GDSL ESTERASE/LIPASE PROTEIN 22		1		 Biochemical character	Os01g0650900	LOC_Os01g46210.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10973	GELP23	OsGELP23	GDSL ESTERASE/LIPASE PROTEIN 23	GDSL esterase/lipase protein 23	GDSL ESTERASE/LIPASE PROTEIN 23		1		 Biochemical character	Os01g0651000	LOC_Os01g46220.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10974	GELP24	OsGELP24	GDSL ESTERASE/LIPASE PROTEIN 24	GDSL esterase/lipase protein 24	GDSL ESTERASE/LIPASE PROTEIN 24		1		 Biochemical character	Os01g0728100	LOC_Os01g52770.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10975	GELP25	OsGELP25	GDSL ESTERASE/LIPASE PROTEIN 25	GDSL esterase/lipase protein 25	GDSL ESTERASE/LIPASE PROTEIN 25		1		 Biochemical character	Os01g0748500	LOC_Os01g54470.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10976	GELP26	OsGELP26	GDSL ESTERASE/LIPASE PROTEIN 26	GDSL esterase/lipase protein 26	GDSL ESTERASE/LIPASE PROTEIN 26		1		 Biochemical character	Os01g0827700	LOC_Os01g61200.1				GO:0006629 - lipid metabolic process, GO:0016298 - lipase activity		
10977	GELP27	OsGELP27	GDSL ESTERASE/LIPASE PROTEIN 27	GDSL esterase/lipase protein 27	GDSL ESTERASE/LIPASE PROTEIN 27		1		 Biochemical character	Os01g0832100	LOC_Os01g61570.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10978	GELP28	OsGELP28	GDSL ESTERASE/LIPASE PROTEIN 28	GDSL esterase/lipase protein 28	GDSL ESTERASE/LIPASE PROTEIN 28		1		 Biochemical character	Os01g0958600	LOC_Os01g72850.1						
10979	GELP29	OsGELP29	GDSL ESTERASE/LIPASE PROTEIN 29	GDSL esterase/lipase protein 29	GDSL ESTERASE/LIPASE PROTEIN 29		2		 Biochemical character	Os02g0101400	LOC_Os02g01140.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005576 - extracellular region		
10980	GELP30	OsGELP30	GDSL ESTERASE/LIPASE PROTEIN 30	GDSL esterase/lipase protein 30	GDSL ESTERASE/LIPASE PROTEIN 30		2		 Biochemical character	Os02g0110000	LOC_Os02g01980.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10981	GELP31	OsGELP31	GDSL ESTERASE/LIPASE PROTEIN 31	GDSL esterase/lipase protein 31	GDSL ESTERASE/LIPASE PROTEIN 31		2		 Biochemical character	Os02g0189200	LOC_Os02g09610.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10982	GELP32	OsGELP32	GDSL ESTERASE/LIPASE PROTEIN 32	GDSL esterase/lipase protein 32	GDSL ESTERASE/LIPASE PROTEIN 32		2		 Biochemical character	Os02g0189300	LOC_Os02g09620.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10983	GELP33	OsGELP33, OsGELP33a, OsGELP33b, OsGELP33c	GDSL ESTERASE/LIPASE PROTEIN 33	GDSL esterase/lipase protein 33	GDSL ESTERASE/LIPASE PROTEIN 33		2		 Biochemical character	Os02g0250400	LOC_Os02g15230.3, LOC_Os02g15230.2, LOC_Os02g15230.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10984	GELP34	OsGELP34	GDSL ESTERASE/LIPASE PROTEIN 34	GDSL esterase/lipase protein 34	GDSL ESTERASE/LIPASE PROTEIN 34		2		 Biochemical character	Os02g0290900	LOC_Os02g18870.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10985	GELP35	OsGELP35	GDSL ESTERASE/LIPASE PROTEIN 35	GDSL esterase/lipase protein 35	GDSL ESTERASE/LIPASE PROTEIN 35		2		 Biochemical character	Os02g0291600	LOC_Os02g18954.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10986	GELP36	OsGELP36	GDSL ESTERASE/LIPASE PROTEIN 36	GDSL esterase/lipase protein 36	GDSL ESTERASE/LIPASE PROTEIN 36		2	LOC_Os02g18990.	 Biochemical character		LOC_Os02g18990				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10987	GELP37	OsGELP37	GDSL ESTERASE/LIPASE PROTEIN 37	GDSL esterase/lipase protein 37	GDSL ESTERASE/LIPASE PROTEIN 37		2		 Biochemical character	Os02g0292600	LOC_Os02g19040.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10988	GELP38	OsGELP38	GDSL ESTERASE/LIPASE PROTEIN 38	GDSL esterase/lipase protein 38	GDSL ESTERASE/LIPASE PROTEIN 38		2		 Biochemical character	Os02g0604000	LOC_Os02g39170.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10989	GELP39	OsGELP39	GDSL ESTERASE/LIPASE PROTEIN 39	GDSL esterase/lipase protein 39	GDSL ESTERASE/LIPASE PROTEIN 39		2		 Biochemical character	Os02g0608801	LOC_Os02g39590.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10990	GELP40	OsGELP40	GDSL ESTERASE/LIPASE PROTEIN 40	GDSL esterase/lipase protein 40	GDSL ESTERASE/LIPASE PROTEIN 40		2		 Biochemical character	Os02g0617400	LOC_Os02g40440.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10991	GELP41	OsGELP41	GDSL ESTERASE/LIPASE PROTEIN 41	GDSL esterase/lipase protein 41	GDSL ESTERASE/LIPASE PROTEIN 41		2		 Biochemical character	Os02g0668900	LOC_Os02g44850.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10992	GELP42	OsGELP42	GDSL ESTERASE/LIPASE PROTEIN 42	GDSL esterase/lipase protein 42	GDSL ESTERASE/LIPASE PROTEIN 42		2		 Biochemical character	Os02g0669000	LOC_Os02g44860.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10993	GELP43	OsGELP43	GDSL ESTERASE/LIPASE PROTEIN 43	GDSL esterase/lipase protein 43	GDSL ESTERASE/LIPASE PROTEIN 43		2		 Biochemical character	Os02g0732800	LOC_Os02g50000.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10994	GELP44	OsGELP44, OsGELP44a, OsGELP44b	GDSL ESTERASE/LIPASE PROTEIN 44	GDSL esterase/lipase protein 44	GDSL ESTERASE/LIPASE PROTEIN 44		2		 Biochemical character	Os02g0740400	LOC_Os02g50690.2, LOC_Os02g50690.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10995	GELP45	OsGELP45, OsGELP45a, OsGELP45b	GDSL ESTERASE/LIPASE PROTEIN 45	GDSL esterase/lipase protein 45	GDSL ESTERASE/LIPASE PROTEIN 45		2		 Biochemical character	Os02g0816200	LOC_Os02g57110.2, LOC_Os02g57110.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10996	GELP46	OsGELP46, OsGELP46a, OsGELP46b	GDSL ESTERASE/LIPASE PROTEIN 46	GDSL esterase/lipase protein 46	GDSL ESTERASE/LIPASE PROTEIN 46		3		 Biochemical character	Os03g0310000	LOC_Os03g19670.2, LOC_Os03g19670.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10997	GELP47	OsGELP47	GDSL ESTERASE/LIPASE PROTEIN 47	GDSL esterase/lipase protein 47	GDSL ESTERASE/LIPASE PROTEIN 47		3		 Biochemical character	Os03g0365000	LOC_Os03g25000.1, LOC_Os03g24960.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10998	GELP48	OsGELP48	GDSL ESTERASE/LIPASE PROTEIN 48	GDSL esterase/lipase protein 48	GDSL ESTERASE/LIPASE PROTEIN 48		3	LOC_Os03g25010. 	 Biochemical character	Os03g0365475	LOC_Os03g25010.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10999	GELP49	OsGELP49	GDSL ESTERASE/LIPASE PROTEIN 49	GDSL esterase/lipase protein 49	GDSL ESTERASE/LIPASE PROTEIN 49		3		 Biochemical character	Os03g0365800	LOC_Os03g25030.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11000	GELP50	OsGELP50, OsGELP50a, OsGELP50b	GDSL ESTERASE/LIPASE PROTEIN 50	GDSL esterase/lipase protein 50	GDSL ESTERASE/LIPASE PROTEIN 50		3		 Biochemical character	Os03g0365900	LOC_Os03g25040.2, LOC_Os03g25040.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11001	GELP51	OsGELP51	GDSL ESTERASE/LIPASE PROTEIN 51	GDSL esterase/lipase protein 51	GDSL ESTERASE/LIPASE PROTEIN 51		3		 Biochemical character	Os03g0580800	LOC_Os03g38390.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11002	GELP52	OsGELP52	GDSL ESTERASE/LIPASE PROTEIN 52	GDSL esterase/lipase protein 52	GDSL ESTERASE/LIPASE PROTEIN 52		3		 Biochemical character	Os03g0581400	LOC_Os03g38470.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11003	GELP53	OsGELP53	GDSL ESTERASE/LIPASE PROTEIN 53	GDSL esterase/lipase protein 53	GDSL ESTERASE/LIPASE PROTEIN 53		3		 Biochemical character	Os03g0683800	LOC_Os03g47940.1				GO:0006629 - lipid metabolic process, GO:0016298 - lipase activity		
11004	GELP54	OsGELP54	GDSL ESTERASE/LIPASE PROTEIN 54	GDSL esterase/lipase protein 54	GDSL ESTERASE/LIPASE PROTEIN 54		3		 Biochemical character	Os03g0844600	LOC_Os03g62740.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11005	GELP55	OsGELP55, OsGELP55a, OsGELP55b	GDSL ESTERASE/LIPASE PROTEIN 55	GDSL esterase/lipase protein 55	GDSL ESTERASE/LIPASE PROTEIN 55		3		 Biochemical character	Os03g0859100	LOC_Os03g64170.2, LOC_Os03g64170.1				GO:0005576 - extracellular region, GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11006	GELP56	OsGELP56	GDSL ESTERASE/LIPASE PROTEIN 56	GDSL esterase/lipase protein 56	GDSL ESTERASE/LIPASE PROTEIN 56		4		 Biochemical character	Os04g0507700	LOC_Os04g42860.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11007	GELP57	OsGELP57	GDSL ESTERASE/LIPASE PROTEIN 57	GDSL esterase/lipase protein 57	GDSL ESTERASE/LIPASE PROTEIN 57		4		 Biochemical character	Os04g0561800	LOC_Os04g47390.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11008	GELP58	OsGELP58, OsGELP58a, OsGELP58b, OsGELP58c, OsGELP58d	GDSL ESTERASE/LIPASE PROTEIN 58	GDSL esterase/lipase protein 58	GDSL ESTERASE/LIPASE PROTEIN 58		4		 Biochemical character	Os04g0577300	LOC_Os04g48800.4, LOC_Os04g48800.3, LOC_Os04g48800.2, LOC_Os04g48800.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11009	GELP59	OsGELP59, RMP7	GDSL ESTERASE/LIPASE PROTEIN 59	GDSL esterase/lipase protein 59, rice microspore-preferred 7	GDSL ESTERASE/LIPASE PROTEIN 59		4	LOC_Os04g55660.	 Biochemical character	Os04g0650200	LOC_Os04g55660.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process, GO:0009556 - microsporogenesis		PO:0001007 - pollen development stage 
11010	GELP60	OsGELP60	GDSL ESTERASE/LIPASE PROTEIN 60	GDSL esterase/lipase protein 60	GDSL ESTERASE/LIPASE PROTEIN 60		5		 Biochemical character	Os05g0133401	LOC_Os05g04240.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0009570 - chloroplast stroma, GO:0006629 - lipid metabolic process		
11011	GELP61	OsGELP61	GDSL ESTERASE/LIPASE PROTEIN 61	GDSL esterase/lipase protein 61	GDSL ESTERASE/LIPASE PROTEIN 61		5		 Biochemical character	Os05g0159200	LOC_Os05g06710.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11012	GELP62	OsGELP62, OsGELP62a, OsGELP62b, OsGELP62c	GDSL ESTERASE/LIPASE PROTEIN 62	GDSL esterase/lipase protein 62	GDSL ESTERASE/LIPASE PROTEIN 62		5		 Biochemical character	Os05g0159300	LOC_Os05g06720.3, LOC_Os05g06720.2, LOC_Os05g06720.1				GO:0016787 - hydrolase activity		
11013	GELP63	OsGELP63	GDSL ESTERASE/LIPASE PROTEIN 63	GDSL esterase/lipase protein 63	GDSL ESTERASE/LIPASE PROTEIN 63		5		 Biochemical character	Os05g0209600	LOC_Os05g11910.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11014	GELP64	OsGELP64, OsGELP64a, OsGELP64b	GDSL ESTERASE/LIPASE PROTEIN 64	GDSL esterase/lipase protein 64	GDSL ESTERASE/LIPASE PROTEIN 64		5		 Biochemical character	Os05g0210100	LOC_Os05g11950.2, LOC_Os05g11950.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11015	GELP65	OsGELP65	GDSL ESTERASE/LIPASE PROTEIN 65	GDSL esterase/lipase protein 65	GDSL ESTERASE/LIPASE PROTEIN 65		5		 Biochemical character	Os05g0210400	LOC_Os05g11970.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11016	GELP66	OsGELP66	GDSL ESTERASE/LIPASE PROTEIN 66	GDSL esterase/lipase protein 66	GDSL ESTERASE/LIPASE PROTEIN 66		5		 Biochemical character	Os05g0401000	LOC_Os05g33270.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11017	GELP67	OsGELP67, OsGELP67a, OsGELP67b	GDSL ESTERASE/LIPASE PROTEIN 67	GDSL esterase/lipase protein 67	GDSL ESTERASE/LIPASE PROTEIN 67		5		 Biochemical character	Os05g0419800	LOC_Os05g34700.2, LOC_Os05g34700.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11018	GELP68	OsGELP68	GDSL ESTERASE/LIPASE PROTEIN 68	GDSL esterase/lipase protein 68	GDSL ESTERASE/LIPASE PROTEIN 68		5		 Biochemical character	Os05g0468500	LOC_Os05g39220.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11019	GELP69	OsGELP69	GDSL ESTERASE/LIPASE PROTEIN 69	GDSL esterase/lipase protein 69	GDSL ESTERASE/LIPASE PROTEIN 69		5		 Biochemical character	Os05g0506500	LOC_Os05g43090.1				GO:0016787 - hydrolase activity		
11020	GELP70	OsGELP70	GDSL ESTERASE/LIPASE PROTEIN 70	GDSL esterase/lipase protein 70	GDSL ESTERASE/LIPASE PROTEIN 70		5		 Biochemical character	Os05g0506600	LOC_Os05g43100.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11021	GELP71	OsGELP71	GDSL ESTERASE/LIPASE PROTEIN 71	GDSL esterase/lipase protein 71	GDSL ESTERASE/LIPASE PROTEIN 71		5		 Biochemical character	Os05g0506700	LOC_Os05g43110.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11022	GELP72	OsGELP72	GDSL ESTERASE/LIPASE PROTEIN 72	GDSL esterase/lipase protein 72	GDSL ESTERASE/LIPASE PROTEIN 72		5		 Biochemical character	Os05g0506800	LOC_Os05g43120.1				GO:0016787 - hydrolase activity		
11023	GELP73	OsGELP73	GDSL ESTERASE/LIPASE PROTEIN 73	GDSL esterase/lipase protein 73	GDSL ESTERASE/LIPASE PROTEIN 73		5		 Biochemical character	Os05g0518300	LOC_Os05g44200.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11024	GELP74	OsGELP74	GDSL ESTERASE/LIPASE PROTEIN 74	GDSL esterase/lipase protein 74	GDSL ESTERASE/LIPASE PROTEIN 74		6		 Biochemical character	Os06g0148200	LOC_Os06g05550.1				GO:0048046 - apoplast, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11025	GELP75	OsGELP75, OsGELP75a, OsGELP75b, OsGELP75c	GDSL ESTERASE/LIPASE PROTEIN 75	GDSL esterase/lipase protein 75	GDSL ESTERASE/LIPASE PROTEIN 75		6		 Biochemical character	Os06g0149100	LOC_Os06g05630.3, LOC_Os06g05630.2, LOC_Os06g05630.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11026	GELP76	OsGELP76	GDSL ESTERASE/LIPASE PROTEIN 76	GDSL esterase/lipase protein 76	GDSL ESTERASE/LIPASE PROTEIN 76		6		 Biochemical character	Os06g0156400	LOC_Os06g06230.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11027	GELP77	OsGELP77, OsGELP77a, OsGELP77b	GDSL ESTERASE/LIPASE PROTEIN 77	GDSL esterase/lipase protein 77	GDSL ESTERASE/LIPASE PROTEIN 77		6		 Biochemical character	Os06g0156600	LOC_Os06g06250.2, LOC_Os06g06250.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11028	GELP78	OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2	GDSL ESTERASE/LIPASE PROTEIN 78	GDSL esterase/lipase protein 78, endosperm-specific gene 82, GDSL lipase 2	GDSL ESTERASE/LIPASE PROTEIN 78		6	LOC_Os06g06260. GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0156700	LOC_Os06g06260.1				GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005789 - endoplasmic reticulum membrane, GO:0016298 - lipase activity, GO:0019216 - regulation of lipid metabolic process, GO:0006629 - lipid metabolic process, GO:0031348 - negative regulation of defense response, GO:0055088 - lipid homeostasis, GO:0005811 - lipid particle	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0020142 - stem internode , PO:0020141 - stem node 
11029	GELP79	OsGELP79	GDSL ESTERASE/LIPASE PROTEIN 79	GDSL esterase/lipase protein 79	GDSL ESTERASE/LIPASE PROTEIN 79		6		 Biochemical character	Os06g0157000	LOC_Os06g06290.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11030	GELP80	OsGELP80	GDSL ESTERASE/LIPASE PROTEIN 80	GDSL esterase/lipase protein 80	GDSL ESTERASE/LIPASE PROTEIN 80		6		 Biochemical character	Os06g0160200	LOC_Os06g06520.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11031	GELP81	OsGELP81	GDSL ESTERASE/LIPASE PROTEIN 81	GDSL esterase/lipase protein 81	GDSL ESTERASE/LIPASE PROTEIN 81		6		 Biochemical character	Os06g0229400	LOC_Os06g12410.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11032	GELP82	OsGELP82	GDSL ESTERASE/LIPASE PROTEIN 82	GDSL esterase/lipase protein 82	GDSL ESTERASE/LIPASE PROTEIN 82		6		 Biochemical character	Os06g0257600	LOC_Os06g14630.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11033	GELP83	OsGELP83, OsGELP83a, OsGELP83b	GDSL ESTERASE/LIPASE PROTEIN 83	GDSL esterase/lipase protein 83	GDSL ESTERASE/LIPASE PROTEIN 83		6		 Biochemical character	Os06g0351500	LOC_Os06g24404.2, LOC_Os06g24404.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process, GO:0005576 - extracellular region		
11034	GELP84	OsGELP84	GDSL ESTERASE/LIPASE PROTEIN 84	GDSL esterase/lipase protein 84	GDSL ESTERASE/LIPASE PROTEIN 84		6		 Biochemical character	Os06g0531600	LOC_Os06g34070.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11035	GELP85	OsGELP85	GDSL ESTERASE/LIPASE PROTEIN 85	GDSL esterase/lipase protein 85	GDSL ESTERASE/LIPASE PROTEIN 85		6		 Biochemical character	Os06g0531900	LOC_Os06g34120.1				GO:0006629 - lipid metabolic process, GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0016788 - hydrolase activity, acting on ester bonds		
11036	GELP86	OsGELP86	GDSL ESTERASE/LIPASE PROTEIN 86	GDSL esterase/lipase protein 86	GDSL ESTERASE/LIPASE PROTEIN 86		6		 Biochemical character	Os06g0560700	LOC_Os06g36520.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11037	GELP87	OsGELP87	GDSL ESTERASE/LIPASE PROTEIN 87	GDSL esterase/lipase protein 87	GDSL ESTERASE/LIPASE PROTEIN 87		6		 Biochemical character	Os06g0636700	LOC_Os06g43044.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11038	GELP88	OsGELP88	GDSL ESTERASE/LIPASE PROTEIN 88	GDSL esterase/lipase protein 88	GDSL ESTERASE/LIPASE PROTEIN 88		6		 Biochemical character	Os06g0694200	LOC_Os06g47910.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11039	GELP89	OsGELP89	GDSL ESTERASE/LIPASE PROTEIN 89	GDSL esterase/lipase protein 89	GDSL ESTERASE/LIPASE PROTEIN 89		6		 Biochemical character	Os06g0725100	LOC_Os06g50940.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11040	GELP90	OsGELP90	GDSL ESTERASE/LIPASE PROTEIN 90	GDSL esterase/lipase protein 90	GDSL ESTERASE/LIPASE PROTEIN 90		6		 Biochemical character	Os06g0725200	LOC_Os06g50950.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11041	GELP91	OsGELP91	GDSL ESTERASE/LIPASE PROTEIN 91	GDSL esterase/lipase protein 91	GDSL ESTERASE/LIPASE PROTEIN 91		7		 Biochemical character	Os07g0586100	LOC_Os07g39740.1				GO:0004560 - alpha-L-fucosidase activity, GO:0009505 - plant-type cell wall, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11042	GELP92	OsGELP92, OsGELP92a, OsGELP92b, OsGELP92c, AChE	GDSL ESTERASE/LIPASE PROTEIN 92	GDSL esterase/lipase protein 92, acetylcholinesterase	GDSL ESTERASE/LIPASE PROTEIN 92		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0586200	LOC_Os07g39750.3, LOC_Os07g39750.2, LOC_Os07g39750.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0004560 - alpha-L-fucosidase activity, GO:0006629 - lipid metabolic process, GO:0009630 - gravitropism, GO:0009629 - response to gravity, GO:0009505 - plant-type cell wall	TO:0002693 - gravity response trait	
11043	GELP93	OsGELP93	GDSL ESTERASE/LIPASE PROTEIN 93	GDSL esterase/lipase protein 93	GDSL ESTERASE/LIPASE PROTEIN 93		7		 Biochemical character	Os07g0642200	LOC_Os07g44780.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11044	GELP94	OsGELP94, OsGELP94a, OsGELP94b	GDSL ESTERASE/LIPASE PROTEIN 94	GDSL esterase/lipase protein 94	GDSL ESTERASE/LIPASE PROTEIN 94		7		 Biochemical character	Os07g0668300	LOC_Os07g47210.2, LOC_Os07g47210.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11045	GELP95	OsGELP95	GDSL ESTERASE/LIPASE PROTEIN 95	GDSL esterase/lipase protein 95	GDSL ESTERASE/LIPASE PROTEIN 95		8		 Biochemical character	Os08g0112900	LOC_Os08g02094.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11046	GELP96	OsGELP96, OsGELP96a, OsGELP96b	GDSL ESTERASE/LIPASE PROTEIN 96	GDSL esterase/lipase protein 96	GDSL ESTERASE/LIPASE PROTEIN 96		8		 Biochemical character	Os08g0565900	LOC_Os08g45150.2, LOC_Os08g45150.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11047	GELP97	OsGELP97, OsGELP97a, OsGELP97b	GDSL ESTERASE/LIPASE PROTEIN 97	GDSL esterase/lipase protein 97	GDSL ESTERASE/LIPASE PROTEIN 97		9		 Biochemical character	Os09g0132200	LOC_Os09g04624.2, LOC_Os09g04624.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11048	GELP98	OsGELP98, OsGELP98a, OsGELP98b	GDSL ESTERASE/LIPASE PROTEIN 98	GDSL esterase/lipase protein 98	GDSL ESTERASE/LIPASE PROTEIN 98		9		 Biochemical character	Os09g0132900	LOC_Os09g04710.2, LOC_Os09g04710.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11049	GELP99	OsGELP99	GDSL ESTERASE/LIPASE PROTEIN 99	GDSL esterase/lipase protein 99	GDSL ESTERASE/LIPASE PROTEIN 99		9		 Biochemical character	Os09g0247600	LOC_Os09g07290.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11050	GELP100	OsGELP100, OsGELP100a, OsGELP100b	GDSL ESTERASE/LIPASE PROTEIN 100	GDSL esterase/lipase protein 100	GDSL ESTERASE/LIPASE PROTEIN 100		9		 Biochemical character	Os09g0540400	LOC_Os09g36880.2, LOC_Os09g36880.1				GO:0016298 - lipase activity, GO:0006629 - lipid metabolic process, GO:0005576 - extracellular region		
11051	GELP101	OsGELP101	GDSL ESTERASE/LIPASE PROTEIN 101	GDSL esterase/lipase protein 101	GDSL ESTERASE/LIPASE PROTEIN 101		9		 Biochemical character	Os09g0567800	LOC_Os09g39430.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11052	GELP102	OsGELP102	GDSL ESTERASE/LIPASE PROTEIN 102	GDSL esterase/lipase protein 102	GDSL ESTERASE/LIPASE PROTEIN 102		10		 Biochemical character	Os10g0140300	LOC_Os10g05088.1				GO:0006629 - lipid metabolic process, GO:0016298 - lipase activity		
11053	GELP103	OsGELP103	GDSL ESTERASE/LIPASE PROTEIN 103	GDSL esterase/lipase protein 103	GDSL ESTERASE/LIPASE PROTEIN 103		10	LOC_Os10g25340.	 Biochemical character	Os10g0392800/Os10g0392900					GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11054	GELP104	OsGELP104	GDSL ESTERASE/LIPASE PROTEIN 104	GDSL esterase/lipase protein 104	GDSL ESTERASE/LIPASE PROTEIN 104		10	LOC_Os10g25380. 	 Biochemical character	Os10g0393600/Os10g0393700					GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11055	GELP105	OsGELP105	GDSL ESTERASE/LIPASE PROTEIN 105	GDSL esterase/lipase protein 105	GDSL ESTERASE/LIPASE PROTEIN 105		10		 Biochemical character	Os10g0393800	LOC_Os10g25400.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11056	GELP106	OsGELP106	GDSL ESTERASE/LIPASE PROTEIN 106	GDSL esterase/lipase protein 106	GDSL ESTERASE/LIPASE PROTEIN 106		10		 Biochemical character	Os10g0394000	LOC_Os10g25420.1				GO:0016787 - hydrolase activity		
11057	GELP107	OsGELP107	GDSL ESTERASE/LIPASE PROTEIN 107	GDSL esterase/lipase protein 107	GDSL ESTERASE/LIPASE PROTEIN 107		10		 Biochemical character	Os10g0438600	LOC_Os10g30290.1				GO:0005576 - extracellular region, GO:0006629 - lipid metabolic process, GO:0016298 - lipase activity		
11058	GELP108	OsGELP108	GDSL ESTERASE/LIPASE PROTEIN 108	GDSL esterase/lipase protein 108	GDSL ESTERASE/LIPASE PROTEIN 108		10		 Biochemical character	Os10g0463200	LOC_Os10g32580.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11059	GELP109	OsGELP109	GDSL ESTERASE/LIPASE PROTEIN 109	GDSL esterase/lipase protein 109	GDSL ESTERASE/LIPASE PROTEIN 109		10		 Biochemical character	Os10g0476700	LOC_Os10g33690.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11060	GELP110	OsGELP110	GDSL ESTERASE/LIPASE PROTEIN 110	GDSL esterase/lipase protein 110	GDSL ESTERASE/LIPASE PROTEIN 110		11		 Biochemical character	Os11g0129500	LOC_Os11g03520.1				GO:0016787 - hydrolase activity		
11061	GELP111	OsGELP111	GDSL ESTERASE/LIPASE PROTEIN 111	GDSL esterase/lipase protein 111	GDSL ESTERASE/LIPASE PROTEIN 111		11		 Biochemical character	Os11g0521000	LOC_Os11g31940.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11062	GELP112	OsGELP112, WDL1	GDSL ESTERASE/LIPASE PROTEIN 112	GDSL esterase/lipase protein 112, wilted dwarf and lethal 1	GDSL ESTERASE/LIPASE PROTEIN 112	wdl1	11	LOC_Os11g48070. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character	Os11g0708400	LOC_Os11g48070.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process	TO:0000709 - leaf gloss	
11063	GELP113	OsGELP113	GDSL ESTERASE/LIPASE PROTEIN 113	GDSL esterase/lipase protein 113	GDSL ESTERASE/LIPASE PROTEIN 113		12		 Biochemical character	Os12g0274200	LOC_Os12g17570.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11064	GELP114	OsGELP114, OsGELP114a, OsGELP114b	GDSL ESTERASE/LIPASE PROTEIN 114	GDSL esterase/lipase protein 114	GDSL ESTERASE/LIPASE PROTEIN 114		12		 Biochemical character	Os12g0566700	LOC_Os12g37910.2, LOC_Os12g37910.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11065	_	OsFbx352, OsFbox516, Os_F0046	_	F-box gene 352, F-box domain protein 352, F-box protein 516			10	LOC_Os10g03850. OsFbx352 in Song et al. 2012. Os_F0046 in Hua et al. 2011.	 Other	Os10g0127900	LOC_Os10g03850.5, LOC_Os10g03850.4, LOC_Os10g03850.3, LOC_Os10g03850.2, LOC_Os10g03850.1						
11066	_	MAIF1, OsFbox104, Os_F0528	_	miRNAs regulated and abiotic stress induced F-box gene 1, F-box protein 104			2	LOC_Os02g44990. Os_F0528 in Hua et al. 2011.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0671100	LOC_Os02g44990.1						
11067	_	OsDRF1, OsFbox209, Os_F0001	_	defense-related F-box protein 1, F-box protein 209			4	DQ237916. LOC_Os04g35190. Os_F0001 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0431200	LOC_Os04g35190.1				GO:0006417 - regulation of translation, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0005739 - mitochondrion, GO:0009408 - response to heat		
11068	_	OsUsp1	_	universal stress protein 1			7	AF491815.	 Tolerance and resistance - Stress tolerance	Os07g0673400	LOC_Os07g47620.1				GO:0006950 - response to stress		
11069	SIP2	Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1	SUBMERGENCE-INDUCED PROTEIN 2	submergence-induced protein 2, submergence-induced protein2, acireductone dioxygenase 1	SUBMERGENCE-INDUCED PROTEIN 2		10	AF050200. C28663, BR000389. A2Z7C4. A1L4T4. LOC_Os10g28350.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0419400	LOC_Os10g28350.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity, GO:0019509 - methionine salvage, GO:0046872 - metal ion binding, GO:0009409 - response to cold	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	
11070	_	OsRab1A2	_	small GTP-binding protein OsRab1A2				AK060839.									
11071	_	OsRab1B1	_	small GTP-binding protein OsRab1B1				AK062838.									
11072	_	OsRab1B2, OsRas1	_	small GTP-binding protein OsRab1B2, Ras related protein 1			1	P40392. an OsHIR1-interacting protein. D15451. Transforming protein (ypt1) in Sasaki et al. 1994. a Ras- related RIC1.		Os01g0558600	LOC_Os01g37800.1				GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0005525 - GTP binding		
11073	_	OsRab1C1	_	small GTP-binding protein OsRab1C1, GTP-binding protein OsRab1			1	D22939. OsRab1 in Sasaki et al. 1994.		Os01g0179700	LOC_Os01g08450.1				GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport		
11074	_	OsRab1C3, OsRab1	_	small GTP-binding protein OsRab1C3			2	OsRab1 in Rho et al. 2009.		Os02g0653800	LOC_Os02g43690.3				GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005525 - GTP binding		
11075	_	OsRab2A1, OsRab2	_	small GTP-binding protein OsRab2A1			4	OsRab2 in Rho et al. 2009.		Os04g0470100	LOC_Os04g39440.4, LOC_Os04g39440.3, LOC_Os04g39440.2, LOC_Os04g39440.1				GO:0005773 - vacuole, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005886 - plasma membrane		
11076	_	OsRab2A2	_	small GTP-binding protein OsRab2A2			2			Os02g0586400	LOC_Os02g37420.1				GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction		
11077	_	OsRab2B1	_	small GTP-binding protein OsRab2B1			10	Os10g0208800 (in Rap1 (build3)).									
11078	_	OsRab5A1, OsRab5b, Rab5b	_	small GTP-binding protein OsRab5A1			3	OsRab5b in Rho et al. 2009, Wen et al. 2015. a plant-specific Rab5.		Os03g0151900	LOC_Os03g05740.1				GO:0045022 - early endosome to late endosome transport, GO:0010009 - external side of endosome membrane, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005769 - early endosome		
11079	_	OsRab5A2, Rab5A2	_	small GTP-binding protein OsRab5A2			10			Os10g0441800	LOC_Os10g30520.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005769 - early endosome, GO:0005525 - GTP binding, GO:0010009 - external side of endosome membrane, GO:0015031 - protein transport, GO:0045022 - early endosome to late endosome transport		
11080	_	OsRab5B1, Rab5c, OsRab5c	_	small GTP-binding protein OsRab5B1			3	Rab5c in Wen et al. 2015.		Os03g0666500	LOC_Os03g46390.1				GO:0015031 - protein transport, GO:0005768 - endosome, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding		
11082	_	OsRab5C1	_	small GTP-binding protein OsRab5C1			6			Os06g0687100	LOC_Os06g47260.2, LOC_Os06g47260.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding		
11083	_	OsRab5D1	_	small GTP-binding protein OsRab5D1			5			Os05g0341600	LOC_Os05g27530.2, LOC_Os05g27530.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0015031 - protein transport		
11084	_	OsRab6A1, Rab6A1	_	small GTP-binding protein OsRab6A1			7	LOC_Os07g31370.1 Ras-related protein.		Os07g0496000	LOC_Os07g31370.1				GO:0032940 - secretion by cell, GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding		PO:0009005 - root 
11085	_	OsRab6B2, Rab6B2, OsRab6a, Rab6a	_	small GTP-binding protein OsRab6B2			3	LOC_Os03g09140. OsRab6a in Yang and Zhang 2016. TO:0020103: adventitious root length. TO:0006049: iron concentration. GO:0097286: iron ion import.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0191400	LOC_Os03g09140.2, LOC_Os03g09140.1				GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0055072 - iron ion homeostasis, GO:0010106 - cellular response to iron ion starvation, GO:0048364 - root development	TO:0000207 - plant height, TO:0000495 - chlorophyll content, TO:0000227 - root length, TO:0000656 - root development trait, TO:0000571 - shoot fresh weight, TO:0000224 - iron sensitivity, TO:0000578 - root fresh weight, TO:0000457 - total biomass yield	PO:0007520 - root development stage 
11086	_	OsRab7A1	_	small GTP-binding protein OsRab7A1			5			Os05g0536900	LOC_Os05g46000.1				GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005886 - plasma membrane		
11087	_	OsRab7A2	_	small GTP-binding protein OsRab7A2			1			Os01g0714900	LOC_Os01g51700.3, LOC_Os01g51700.2, LOC_Os01g51700.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0015031 - protein transport		
11088	_	OsRab7B1, Rab7B1, OsRab7	_	small GTP-binding protein OsRab7B1			1	LOC_Os01g12730.		Os01g0227300	LOC_Os01g12730.2, LOC_Os01g12730.1				GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0005773 - vacuole, GO:0007264 - small GTPase mediated signal transduction		
11089	_	OsRab7B2	_	small GTP-binding protein OsRab7B2			5			Os05g0445000							
11090	_	OsRab7B3, Rab7B3, OsRab7, Rab7	_	small GTP-binding protein OsRab7B3, GTP-binding protein OsRab7			5	a Rice Rab7 Homolog. a Vesicle Trafficking Gene. OsRab7 in Sasaki et al. 1994, Nahm et al. 2003, Peng et al. 2014, El-Esawi and Alayafi 2019. AY226827. D16050.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0516600	LOC_Os05g44050.1				GO:0030104 - water homeostasis, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0015031 - protein transport, GO:0006979 - response to oxidative stress, GO:0007264 - small GTPase mediated signal transduction, GO:0009651 - response to salt stress, GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0007033 - vacuole organization, GO:0016192 - vesicle-mediated transport, GO:0005774 - vacuolar membrane	TO:0000396 - grain yield, TO:0000467 - cell membrane stability, TO:0000605 - hydrogen peroxide content, TO:0006002 - proline content, TO:0000333 - sugar content, TO:0000325 - soluble protein content, TO:0000495 - chlorophyll content, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11091	_	OsRab8A1	_	small GTP-binding protein OsRab8A1			7	AY576526(Homologs of the Os03g0819900 gene).							GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0009873 - ethylene mediated signaling pathway, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005773 - vacuole		
11092	_	OsRab8A2	_	small GTP-binding protein OsRab8A2			5			Os05g0461300	LOC_Os05g38630.2, LOC_Os05g38630.1				GO:0005773 - vacuole, GO:0015031 - protein transport, GO:0009873 - ethylene mediated signaling pathway, GO:0007264 - small GTPase mediated signal transduction, GO:0005886 - plasma membrane, GO:0005525 - GTP binding		
11093	_	OsRab8A3	_	small GTP-binding protein OsRab8A3			7	a Ras-related protein. a G-protein signaling component.	 Tolerance and resistance - Stress tolerance	Os07g0239400	LOC_Os07g13530.2, LOC_Os07g13530.1				GO:0009873 - ethylene mediated signaling pathway, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0005773 - vacuole, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
11094	_	OsRab8A5, OsRab8a	_	small GTP-binding protein OsRab8A5			3			Os03g0819900	LOC_Os03g60530.3, LOC_Os03g60530.1				GO:0005773 - vacuole, GO:0007264 - small GTPase mediated signal transduction, GO:0009873 - ethylene mediated signaling pathway, GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005886 - plasma membrane		
11095	_	OsRab8B1	_	small GTP-binding protein OsRab8B1			7			Os07g0195100	LOC_Os07g09680.3, LOC_Os07g09680.2, LOC_Os07g09680.1				GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005525 - GTP binding		
11096	_	OsRab11A1	_	small GTP-binding protein OsRab11A1			3			Os03g0843100	LOC_Os03g62600.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005768 - endosome, GO:0000910 - cytokinesis, GO:0009504 - cell plate, GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0015031 - protein transport		
11097	_	OsRab11A2	_	small GTP-binding protein OsRab11A2			5			Os05g0105100	LOC_Os05g01480.1				GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005768 - endosome, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0000910 - cytokinesis, GO:0009504 - cell plate		
11098	_	OsRab11B2	_	small GTP-binding protein OsRab11B2			3			Os03g0823700	LOC_Os03g60870.1				GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0005768 - endosome, GO:0009504 - cell plate, GO:0015031 - protein transport, GO:0005525 - GTP binding		
11099	_	OsRab11C1	_	small GTP-binding protein OsRab11C1			1			Os01g0667600	LOC_Os01g47730.1				GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0015031 - protein transport		
11100	_	OsRab11C2	_	small GTP-binding protein OsRab11C2			9			Os09g0327100	LOC_Os09g15790.1				GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005886 - plasma membrane		
11101	_	OsRab11C3	_	small GTP-binding protein OsRab11C3			5	a Ras-related protein. a G-protein signaling component.	 Tolerance and resistance - Stress tolerance	Os05g0564400	LOC_Os05g48980.1				GO:0046686 - response to cadmium ion, GO:0009411 - response to UV, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding	TO:0000160 - UV light sensitivity	
11102	_	OsRab11D1, OsRab11, Rab11, ric2	_	small GTP-binding protein OsRab11D1, ras-related small GTP-binding protein ric2			6	P40393. D13758. D29719.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0551400	LOC_Os06g35814.1				GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005634 - nucleus, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport	TO:0006001 - salt tolerance	
11103	_	OsRab11D2	_	small GTP-binding protein OsRab11D2			1			Os01g0750000	LOC_Os01g54590.1				GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0005773 - vacuole, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding		
11104	_	OsRab11D3	_	small GTP-binding protein OsRab11D3			5			Os05g0516800	LOC_Os05g44070.1				GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction		
11105	_	OsRab11E1	_	small GTP-binding protein OsRab11E1			10			Os10g0377400	LOC_Os10g23100.1				GO:0005525 - GTP binding, GO:0032456 - endocytic recycling, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005886 - plasma membrane		
11106	_	OsRab11F1, OsPRA2, PRA2, OsPra2	_	small GTP-binding protein OsRab11F1			6	a small G protein which is homologous with Pea Pra2 protein. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Culm	Os06g0714600	LOC_Os06g50060.1				GO:0016020 - membrane, GO:0009504 - cell plate, GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus, GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005886 - plasma membrane, GO:0009742 - brassinosteroid mediated signaling, GO:0005768 - endosome	TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity	PO:0020033 - coleoptile , PO:0009005 - root 
11107	_	OsRab11F2	_	small GTP-binding protein OsRab11F2			9			Os09g0527600	LOC_Os09g35860.1				GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0009504 - cell plate, GO:0005768 - endosome, GO:0005634 - nucleus		
11108	_	OsRab11G1	_	small GTP-binding protein OsRab11G1			7			Os07g0634200	LOC_Os07g44040.1				GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction		
11109	_	OsRab11G2	_	small GTP-binding protein OsRab11G2			8			Os08g0525000	LOC_Os08g41340.1				GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005886 - plasma membrane		
11110	_	OsRab18A1	_	small GTP-binding protein OsRab18A1				AK111647.									
11111	_	OsRab18B1	_	small GTP-binding protein OsRab18B1			10			Os10g0456600	LOC_Os10g31830.1				GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005777 - peroxisome		
11112	_	OsRab18B2, Q10RT8	_	small GTP-binding protein OsRab18B2, Ras-related protein RAB-18			3	RAB18 homologous protein. CT830193.		Os03g0146000	LOC_Os03g05280.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005777 - peroxisome, GO:0015031 - protein transport		
11113	_	VSR3, OsVSR3	_				7			Os07g0680000	LOC_Os07g48229.1				GO:0005509 - calcium ion binding, GO:0006896 - Golgi to vacuole transport, GO:0009940 - amino-terminal vacuolar sorting propeptide binding, GO:0017119 - Golgi transport complex, GO:0005886 - plasma membrane		
11114	MTI4A	OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b	METALLOTHIONEIN I-4A	Metallothionein 1a, type 1 metallothionein a1, type 1 metallothionein a2, Metallothionein protein OsIDS1	METALLOTHIONEIN I-4A		12	Q0IMG5. BR000392. LOC_Os12g38270. OsMT1b in Wong et al. 2004. OsMT-I-4a in Zhou et al. 2006. OsMT1a in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0570700	LOC_Os12g38270.2, LOC_Os12g38270.1				GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0010618 - aerenchyma formation, GO:0006950 - response to stress, GO:0009628 - response to abiotic stimulus, GO:0005507 - copper ion binding	TO:0000168 - abiotic stress trait, TO:0000103 - deepwater stress	
11115	MTI1B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1	METALLOTHIONEIN I-1B	Metallothionein 1b, type 1 metallothionein b, Metallothionein type 1-like protein a	METALLOTHIONEIN I-1B		3	LOC_Os03g17870. Q10N03. TO:0006059: cadmium concentration. OsMT-I-1b in Zhou et al. 2006. OsMT1b in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0288000	LOC_Os03g17870.1				GO:0042542 - response to hydrogen peroxide, GO:0005507 - copper ion binding, GO:0045471 - response to ethanol, GO:0046686 - response to cadmium ion		
11116	MTI4B	OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc	METALLOTHIONEIN I-4B	Metallothionein 1c, type 1 metallothionein c, Metallothionein type 1-like protein c	METALLOTHIONEIN I-4B		12	Q2QNE8. LOC_Os12g38051. OsMT1f in Andres-Borderia et al. 2017. OsMT-I-4b in Zhou et al. 2006. OsMT1c in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0568200	LOC_Os12g38051.1				GO:0046688 - response to copper ion, GO:0005507 - copper ion binding	TO:0000021 - copper sensitivity	
11117	MTI1A	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1	METALLOTHIONEIN I-1A	Metallothionein 1e, type 1 metallothionein e, rice genomic metallothionein-like gene, metallothionein-like gene-1, rice genomic metallothionein-like gene-1, Metallothionein-like protein 1	METALLOTHIONEIN I-1A		11	A2ZH20, P0C5B3. EU684548. AF017366. U18404. U43529. U46159. BF889443. LOC_Os11g47809. OsMT1a in Wong et al. 2004. OsMT-I-1a in Zhou et al. 2006. OsMT1e in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0704500	LOC_Os11g47809.1				GO:0030912 - response to deep water, GO:0005507 - copper ion binding, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0010618 - aerenchyma formation, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000074 - blast disease, TO:0000103 - deepwater stress	PO:0009005 - root 
11118	MT1F	OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb	METALLOTHIONEIN 1F	Metallothionein 1f, type 1 metallothionein f, Metallothionein type 1-like protein b	METALLOTHIONEIN 1F		12	LOC_Os12g38010. OsMT1c in Andres-Borderia et al. 2017. OsMT1f in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0567800	LOC_Os12g38010.1				GO:0005507 - copper ion binding, GO:0000302 - response to reactive oxygen species, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0002657 - oxidative stress	
11119	MT1G	OsMT1g, MT1g, MT1Le, OsMT1Le	METALLOTHIONEIN 1G	Metallothionein 1g, type 1 metallothionein g, Metallothionein type 1-like protein e	METALLOTHIONEIN 1G		12	LOC_Os12g38290.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0571000	LOC_Os12g38290.1				GO:0010044 - response to aluminum ion, GO:0000302 - response to reactive oxygen species, GO:0005507 - copper ion binding	TO:0002657 - oxidative stress, TO:0000354 - aluminum sensitivity	
11120	MT2A	OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1	METALLOTHIONEIN 2A	Metallothionein 2a, type 2 metallothionein a, metallothionein 6, metallothionein-like gene-2, MT-like gene-2	METALLOTHIONEIN 2A		1	LOC_Os01g05650. P94029. D89931.  U43530. D15602. AB175913-AB175925 (O. rufipogon).OsMT2a in Wong et al. 2004, Kumar et al. 2012. OsMT-I-2a in Zhou et al. 2006. met6 in Miyashita et al. 2005.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0149800	LOC_Os01g05650.1				GO:0005507 - copper ion binding, GO:0006950 - response to stress		
11121	MTI2B	OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2	METALLOTHIONEIN I-2B	Metallothionein 2c, type 2 metallothionein c, metallothionein 5, metallothionein (MT)-like protein	METALLOTHIONEIN I-2B		1	LOC_Os01g74300. Q5JM82. AF017365. AB175896-AB175912 (O. rufipogon). AB002820. OsMT2c in Wong et al. 2004, Kumar et al. 2012. OsMT-I-2b in Zhou et al. 2006. met5 in Miyashita et al. 2005. As3+ binding.	 Biochemical character	Os01g0974200	LOC_Os01g74300.1				GO:0046872 - metal ion binding		
11122	MT2D	OsMT2d	METALLOTHIONEIN 2D	Metallothionein 2d, type 2 metallothionein d	METALLOTHIONEIN 2D		1		 Biochemical character	Os01g0149200	LOC_Os01g05585.1				GO:0046872 - metal ion binding		
11123	MTI3A	OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a	METALLOTHIONEIN I-3A	Metallothionein 3a, type 3 metallothionein a, metallothionein 2	METALLOTHIONEIN I-3A		1	LOC_Os01g10400. A2WLS0, A1YTM8. AF001396. met2 in Miyashita et al. 2005. AB175797-AB175896 (O. rufipogon). AU055773, AU055774, AU057501, AU057502. XB21 interacting protein (XB21IP). OsMT3a in Wong et al. 2004, Kumar et al. 2012. OsMT-I-3a in Zhou et al. 2006.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0200700	LOC_Os01g10400.2, LOC_Os01g10400.1				GO:0010038 - response to metal ion, GO:0046872 - metal ion binding	TO:0000432 - temperature response trait, TO:0000238 - growth media composition sensitivity	
11124	MTII1A	OsMT4, OsMT-II-1a, MT4, MT-II-1a	METALLOTHIONEIN II-1A	Metallothionein 4, type 4 metallothionein	METALLOTHIONEIN II-1A		10	LOC_Os10g39610. Q109B0, AY572960, AAS78805. OsMT4 in Wong et al. 2004, Kumar et al. 2012. OsMT-II-1a in Zhou et al. 2006.	 Biochemical character	Os10g0542100	LOC_Os10g39610.2, LOC_Os10g39610.1				GO:0008270 - zinc ion binding		
11125	_	OsCRY1a, OsCRY1, CRY1a, CRY2	_	cryptochrome 1a, Blue-light-receptor cryptochrome 1			2	AB073546. AB024337. a rice ortholog of Arabidopsis gene for circadian clock component. CRY2 in Matsuzaki et al. 2015. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0573200	LOC_Os02g36380.2, LOC_Os02g36380.1			86.8	GO:0006281 - DNA repair, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0009881 - photoreceptor activity, GO:0010224 - response to UV-B, GO:0009583 - detection of light stimulus, GO:0009640 - photomorphogenesis, GO:0009785 - blue light signaling pathway, GO:0009882 - blue light photoreceptor activity, GO:0010075 - regulation of meristem growth, GO:0010118 - stomatal movement, GO:0004672 - protein kinase activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0010617 - circadian regulation of calcium ion oscillation, GO:0010343 - singlet oxygen-mediated programmed cell death, GO:0055114 - oxidation reduction, GO:0051510 - regulation of unidimensional cell growth, GO:0046777 - protein amino acid autophosphorylation, GO:0005524 - ATP binding, GO:0046283 - anthocyanin metabolic process, GO:0003913 - DNA photolyase activity	TO:0000601 - UV-B light sensitivity	
11126	_	OsCRY1b, OsCRY2, CRY1b, CRY1	_	cryptochrome 1b, Blue-light-receptor cryptochrome 2		cry1b-1, cry1b-2, cry1b-3	4	AB073547. AB098568. a rice ortholog of Arabidopsis gene for circadian clock component. CRY1 in Matsuzaki et al. 2015.	 Biochemical character	Os04g0452100	LOC_Os04g37920.6, LOC_Os04g37920.4, LOC_Os04g37920.3, LOC_Os04g37920.1			67.8	GO:0010118 - stomatal movement, GO:0005737 - cytoplasm, GO:0007623 - circadian rhythm, GO:0010343 - singlet oxygen-mediated programmed cell death, GO:0010617 - circadian regulation of calcium ion oscillation, GO:0046283 - anthocyanin metabolic process, GO:0055114 - oxidation reduction, GO:0009583 - detection of light stimulus, GO:0006281 - DNA repair, GO:0051510 - regulation of unidimensional cell growth, GO:0046777 - protein amino acid autophosphorylation, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0003913 - DNA photolyase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009640 - photomorphogenesis, GO:0009785 - blue light signaling pathway, GO:0009882 - blue light photoreceptor activity, GO:0010075 - regulation of meristem growth		
11127	_	OsCRY2, CRY2	_	cryptochrome 2			2	AB103094. LOC_Os02g41550.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0625000	LOC_Os02g41550.4, LOC_Os02g41550.3, LOC_Os02g41550.2, LOC_Os02g41550.1			101.2	GO:0009881 - photoreceptor activity, GO:0006281 - DNA repair, GO:0010224 - response to UV-B, GO:0009648 - photoperiodism, GO:0003913 - DNA photolyase activity, GO:0009908 - flower development	TO:0000601 - UV-B light sensitivity	PO:0007615 - flower development stage 
11128	_	OsbHLH133, bHLH133, OsRSL8, RSL8	_	basic helix-loop-helix protein 133, ROOT HAIR DEFECTIVE-SIX LIKE 8	_		12			Os12g0508500	LOC_Os12g32400.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
11129	_	OsMTN, MTN	_	Methylthioadenosine/S-adenosyl homocysteine nucleosidase, 5'-methylthioadenosine nucleosidase, MTA nucleosidase			6	AU031688. AF458088.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0112200	LOC_Os06g02220.1				GO:0019509 - methionine salvage, GO:0010106 - cellular response to iron ion starvation, GO:0003824 - catalytic activity, GO:0034224 - cellular response to zinc ion starvation, GO:0008782 - adenosylhomocysteine nucleosidase activity, GO:0005886 - plasma membrane, GO:0009116 - nucleoside metabolic process	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
11130	_	OsMTK, OsMTK1, MTK, MTK1	_	Methylthioribose Kinase 1, MTR kinase 1			4	Q7XR61. AY593959. D25025, AU031747, D23753.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0669800	LOC_Os04g57400.1				GO:0009651 - response to salt stress, GO:0019509 - methionine salvage, GO:0034224 - cellular response to zinc ion starvation, GO:0005524 - ATP binding, GO:0010106 - cellular response to iron ion starvation, GO:0046522 - S-methyl-5-thioribose kinase activity	TO:0006001 - salt tolerance, TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
11131	_	OsSAM2, OsSAMS2, OS-SAMS2	_	S-Adenosyl-l-methionine synthetase 2, S-adenosylmethionine synthetase 2			1	P93438. U82833. D24436.	 Biochemical character,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os01g0323600	LOC_Os01g22010.4, LOC_Os01g22010.3, LOC_Os01g22010.2, LOC_Os01g22010.1				GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0046872 - metal ion binding, GO:0004478 - methionine adenosyltransferase activity, GO:0006730 - one-carbon metabolic process, GO:0006555 - methionine metabolic process, GO:0046394 - carboxylic acid biosynthetic process, GO:0034224 - cellular response to zinc ion starvation, GO:0010106 - cellular response to iron ion starvation, GO:0008652 - cellular amino acid biosynthetic process, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006556 - S-adenosylmethionine biosynthetic process, GO:0009809 - lignin biosynthetic process, GO:0015948 - methanogenesis	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	
11132	_	OsAPT1, APRT, APT1	_	Adenine phosphoribosyltransferase 1			12	AU172608.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0589100	LOC_Os12g39860.2, LOC_Os12g39860.1				GO:0034224 - cellular response to zinc ion starvation, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0006168 - adenine salvage, GO:0009116 - nucleoside metabolic process, GO:0009505 - plant-type cell wall, GO:0019509 - methionine salvage, GO:0009507 - chloroplast, GO:0010106 - cellular response to iron ion starvation, GO:0003999 - adenine phosphoribosyltransferase activity, GO:0046686 - response to cadmium ion	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
11133	_	OsRPI, RPI	_	ribose-5-phosphate isomerase			4	C26897. GO:0080167:response to karrikin.	 Biochemical character	Os04g0306400	LOC_Os04g24140.1				GO:0008219 - cell death, GO:0030244 - cellulose biosynthetic process, GO:0010228 - vegetative to reproductive phase transition, GO:0009052 - pentose-phosphate shunt, non-oxidative branch, GO:0046109 - uridine biosynthetic process, GO:0005737 - cytoplasm, GO:0004751 - ribose-5-phosphate isomerase activity		
11134	_	OsDEP, DEP	_	Dehydratase-enolase-phosphatase, Methylthioribulose-1-phosphate dehydratase-enolase-phosphatase			11	Q2R483. D23987.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0484000	LOC_Os11g29370.1				GO:0009570 - chloroplast stroma, GO:0046570 - 5-methylthioribulose-1-phosphate 4-dehydratase activity, GO:0043874 - acireductone synthase activity, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0019509 - methionine salvage, GO:0008967 - phosphoglycolate phosphatase activity, GO:0000287 - magnesium ion binding	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	
11135	_	OsIDI4, IDI4	_	Aminotransferase OsIDI4, Fe-deficiency-induced protein 4			9	AU164691. Putative aminotransferase catalyzing the synthesis of methionine. Asparate/tyrosine/aromatic aminotransferase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0453800	LOC_Os09g28050.3, LOC_Os09g28050.2, LOC_Os09g28050.1				GO:0019509 - methionine salvage, GO:0034224 - cellular response to zinc ion starvation, GO:0010106 - cellular response to iron ion starvation, GO:0008483 - transaminase activity, GO:0009058 - biosynthetic process, GO:0016829 - lyase activity, GO:0030170 - pyridoxal phosphate binding	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
11136	_	OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63	_	basic helix-loop-helix protein 063			3	GO:1901967: negative regulation of cellular response to iron ion starvation. Transcriptional regulator (putatively negative).	 Tolerance and resistance - Stress tolerance,  Other	Os03g0379300	LOC_Os03g26210.1, LOC_Os03g26210.3, LOC_Os03g26210.2				GO:0003677 - DNA binding, GO:0010106 - cellular response to iron ion starvation, GO:0055072 - iron ion homeostasis	TO:0000224 - iron sensitivity	PO:0009005 - root , PO:0009006 - shoot system 
11137	_	OsVIT1;2, OsVIT1	_	vacuolar iron influxer VIT1;2, Vacuolar Iron Transporter 1		osvit1-1	4	Q6MWE5.		Os04g0463400	LOC_Os04g38940.2, LOC_Os04g38940.1				GO:0034755 - iron ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005381 - iron ion transmembrane transporter activity, GO:0005774 - vacuolar membrane, GO:0006880 - intracellular sequestering of iron ion		
11138	_	OsMIR, MIR	_	mitochondrial iron-regulated gene		mir	12	TO:0020089: iron content.	 Tolerance and resistance - Stress tolerance	Os12g0282000	LOC_Os12g18410.2, LOC_Os12g18410.1				GO:0055072 - iron ion homeostasis, GO:0010106 - cellular response to iron ion starvation		
11139	_	OsFRDL1, FRDL1	_	FRD3-like protein 1			3	LOC_Os03g11734. citrate efflux transporter.	 Biochemical character	Os03g0216700	LOC_Os03g11734.3, LOC_Os03g11734.2, LOC_Os03g11734.1				GO:0016020 - membrane, GO:0015238 - drug transporter activity, GO:0015297 - antiporter activity		
11140	_	OsFRDL2	_	FRD3-like protein 2			10		 Biochemical character	Os10g0206800	LOC_Os10g13940.1				GO:0005886 - plasma membrane, GO:0006879 - cellular iron ion homeostasis, GO:0015746 - citrate transport, GO:0015238 - drug transporter activity, GO:0015137 - citrate transmembrane transporter activity, GO:0015297 - antiporter activity		
11141	_	OsFRDL3	_	FRD3-like protein 3			2			Os02g0833100	LOC_Os02g58620.1						
11142	_	OsFRDL4, FRDL4, MATE	_	FRD3-like protein 4			1	LOC_Os01g69010. multidrug and toxic compound extrusion (MATE) family. citrate efflux MATE transporter. AB608020. GO:1904880: response to hydrogen sulfide.	 Tolerance and resistance - Stress tolerance	Os01g0919100	LOC_Os01g69010.1				GO:0046720 - citric acid secretion, GO:0010044 - response to aluminum ion	TO:0000354 - aluminum sensitivity	
11143	XB24	XB24	XA21 BINDING PROTEIN 24	XA21 binding protein 24	XA21 BINDING PROTEIN 24		1		 Tolerance and resistance - Disease resistance	Os01g0771200	LOC_Os01g56470.1				GO:0016887 - ATPase activity		
11144	XB15	XB15, OsPP2C35, PP2C35, OsPP59, SIP35	XA21 BINDING PROTEIN 15	XA21 binding protein 15, protein phosphatase 2C35, protein phosphatase 2C 35, protein phosphatase 59, SKIP interacting protein 35, SKIPa-interacting protein 35, SKIPa-interacting protein 35	XA21 BINDING PROTEIN 15		3	LOC_Os03g60650. Q84T94. AJ575237. EU368725. 	 Seed,  Tolerance and resistance - Disease resistance	Os03g0821300	LOC_Os03g60650.1				GO:0048366 - leaf development, GO:0006952 - defense response, GO:0008152 - metabolic process, GO:0046872 - metal ion binding, GO:0007165 - signal transduction, GO:0004721 - phosphoprotein phosphatase activity, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
11145	_	XBOS31, OsRFPHC-7	_	RING finger protein OsRFPHC-7, RING-HC protein 7			1	rice homolog of XB3. Q94CT7.	 Biochemical character	Os01g0974400	LOC_Os01g74320.1				GO:0016567 - protein ubiquitination, GO:0016874 - ligase activity, GO:0008270 - zinc ion binding		
11146	_	XBOS32	_				2	rice homolog of XB3. Q6KAE5.		Os02g0791200	LOC_Os02g54860.2, LOC_Os02g54860.1				GO:0016567 - protein ubiquitination, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity		
11147	_	XBOS33	_				10	rice homolog of XB3. Q337A0.		Os10g0521600	LOC_Os10g37730.3, LOC_Os10g37730.2, LOC_Os10g37730.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0008270 - zinc ion binding		
11148	_	XBOS34	_				7	rice homolog of XB3. Q7XI08.		Os07g0446100	LOC_Os07g26490.2, LOC_Os07g26490.1				GO:0016567 - protein ubiquitination, GO:0016874 - ligase activity, GO:0008270 - zinc ion binding		
11149	_	XBOS35	_				8	rice homolog of XB3. Q7EZ44.		Os08g0258200	LOC_Os08g15840.5, LOC_Os08g15840.4, LOC_Os08g15840.2, LOC_Os08g15840.1				GO:0016567 - protein ubiquitination, GO:0016874 - ligase activity, GO:0008270 - zinc ion binding		
11150	_	XBOS36	_				6	rice homolog of XB3. DQ088999. Q4JHE0.		Os06g0128700	LOC_Os06g03800.2, LOC_Os06g03800.1				GO:0016567 - protein ubiquitination, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity		
11151	_	OsMGT1, OsMRS2-2	_	MAGNESIUM TRANSPORTER1, Magnesium transporter 1, MRS2/MGT family member 2		osmgt1	1	AB731703. Q8S1N1.	 Biochemical character	Os01g0869200	LOC_Os01g64890.1				GO:0015095 - magnesium ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
11152	BC15	OsCTL1	BRITTLE CULM 15	brittle culm15, BRITTLE CULM15, brittle, culm-15, chitinase-like1, chitinase-like 1			9		 Vegetative organ - Culm	Os09g0494200	LOC_Os09g32080.2, LOC_Os09g32080.1				GO:0009651 - response to salt stress, GO:0005975 - carbohydrate metabolic process, GO:0010053 - root epidermal cell differentiation, GO:0006032 - chitin catabolic process, GO:0016998 - cell wall macromolecule catabolic process, GO:0009408 - response to heat, GO:0009735 - response to cytokinin stimulus, GO:0009414 - response to water deprivation, GO:0004568 - chitinase activity, GO:0010337 - regulation of salicylic acid metabolic process, GO:0043255 - regulation of carbohydrate biosynthetic process, GO:0005886 - plasma membrane, GO:0009825 - multidimensional cell growth, GO:0009809 - lignin biosynthetic process		
11153	_	OsSPX2, SPX2	_	SPX (SYG/PHO81/XPR1) domain gene 2		spx2	2	LOC_Os02g10780. Q6Z784. Pi signaling pathway. TO:0020098: nitrate sensitivity.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0202200	LOC_Os02g10780.1				GO:0070417 - cellular response to cold, GO:0080040 - positive regulation of cellular response to phosphate starvation, GO:0005634 - nucleus, GO:0010167 - response to nitrate, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity, TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending	
11154	_	OsSPX3, SPX3	_	SPX (SYG/PHO81/XPR1) domain gene 3		spx3	10	Q7XEY9. TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0392600	LOC_Os10g25310.1				GO:0042594 - response to starvation, GO:0070417 - cellular response to cold, GO:0010167 - response to nitrate, GO:0016036 - cellular response to phosphate starvation, GO:0080040 - positive regulation of cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	
11155	_	OsSPX4, SPX4, Os-SPX4	_	SPX (SYG/PHO81/XPR1) domain gene 4, SPX protein 4			3	Q10B79. TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0827500	LOC_Os03g61200.2, LOC_Os03g61200.1				GO:0070417 - cellular response to cold, GO:0016036 - cellular response to phosphate starvation	TO:0000168 - abiotic stress trait	
11156	_	OsSPX5, SPX5	_	SPX (SYG/PHO81/XPR1) domain gene 5			3	Q7Y0F6. KF267997. TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0406100	LOC_Os03g29250.1				GO:0070417 - cellular response to cold, GO:0010167 - response to nitrate, GO:0016036 - cellular response to phosphate starvation, GO:0080040 - positive regulation of cellular response to phosphate starvation, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity	
11157	_	OsSPX6, SPX6	_	SPX (SYG/PHO81/XPR1) domain gene 6			7	LOC_Os07g42330. (not found in MSU Rice Genome Annotation Project Release 7 data). KF267998. Q8H398. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0614700					GO:0070417 - cellular response to cold, GO:0042594 - response to starvation		
11158	_	LYP4, Os-LYP4, OsLYP4	_	lysin motif-containing protein 4, lysin motif (LysM)-containing protein  4, LysM-containing protein  4			9	GO:0061057: peptidoglycan recognition protein signaling pathway.	 Tolerance and resistance - Disease resistance	Os09g0452200	LOC_Os09g27890.2, LOC_Os09g27890.1				GO:0032491 - detection of molecule of fungal origin, GO:0032490 - detection of molecule of bacterial origin, GO:0010200 - response to chitin, GO:0016998 - cell wall macromolecule catabolic process, GO:0042742 - defense response to bacterium, GO:0046658 - anchored to plasma membrane, GO:0050832 - defense response to fungus	TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance	
11159	_	LYP6, Os-LYP6, OsLYP6	_	lysin motif-containing protein 6, lysin motif (LysM)-containing protein 6, LysM-containing protein 6			6	GO:0061057: peptidoglycan recognition protein signaling pathway.	 Tolerance and resistance - Disease resistance	Os06g0208800	LOC_Os06g10660.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010200 - response to chitin, GO:0046658 - anchored to plasma membrane, GO:0032491 - detection of molecule of fungal origin, GO:0032490 - detection of molecule of bacterial origin	TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance	
11160	_	LYP2, Os-LYP2	_	lysin motif-containing protein 2			11			Os11g0548600	LOC_Os11g34570.1				GO:0016998 - cell wall macromolecule catabolic process		
11161	_	LYP3, Os-LYP3	_	lysin motif-containing protein 3			9			Os09g0548200	LOC_Os09g37600.1				GO:0016998 - cell wall macromolecule catabolic process		
11162	_	LYP5, Os-LYP5	_	lysin motif-containing protein 5			2			Os02g0769200	LOC_Os02g53000.2, LOC_Os02g53000.1				GO:0016998 - cell wall macromolecule catabolic process		
11163	_	SDG724, LVP1, OsSET34	_	SET Domain Group Protein 724, long vegetative phase1, SET protein 34		lvp1, lvp1-1, lvp1-2	9		 Biochemical character,  Reproductive organ - Heading date	Os09g0307800	LOC_Os09g13740.2, LOC_Os09g13740.1				GO:0034968 - histone lysine methylation, GO:0005634 - nucleus, GO:0018024 - histone-lysine N-methyltransferase activity		
11164	SDG708	SDG708	SET DOMAIN GROUP PROTEIN 708	SET Domain Group Protein708	SET DOMAIN GROUP PROTEIN 708		4	LOC_Os04g34980 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character								
11165	SDG725	OsSDG725, OsSET8, ASHH2	SET DOMAIN GROUP PROTEIN 725	"SET Domain Group Protein725, SET DOMAIN GROUP725, SET protein 8, \"ABSENT, SMALL, OR HOMEOTIC DISCS 1 HOMOLOG 2\""	SET DOMAIN GROUP PROTEIN 725	sdg725	2	LOC_Os02g34850. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Morphological traits,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0554000	LOC_Os02g34850.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0009908 - flower development, GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0034968 - histone lysine methylation, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:2000028 - regulation of photoperiodism, flowering	TO:0000397 - grain size, TO:0002688 - leaf lamina joint bending, TO:0000145 - internode length, TO:0000207 - plant height, TO:0000456 - spikelet number, TO:0000206 - leaf angle, TO:0000391 - seed size	PO:0007615 - flower development stage 
11166	SDG736	SDG736, OsSET9	SET DOMAIN GROUP PROTEIN 736	SET Domain Group Protein736, SET protein 9	SET DOMAIN GROUP PROTEIN 736		2		 Biochemical character	Os02g0611300	LOC_Os02g39810.1, LOC_Os02g39800.1				GO:0034968 - histone lysine methylation, GO:0005634 - nucleus, GO:0018024 - histone-lysine N-methyltransferase activity		
11167	HAC701	OsHAC701, OsKIX_1, OsHAC5	HISTONE ACETYLTRANSFERASE HAC701	Histone acetyltransferase HAC701, KIX domain protein 1	HISTONE ACETYLTRANSFERASE HAC701		1	Q9XHY7. CBP family.	 Biochemical character	Os01g0246100	LOC_Os01g14370.2, LOC_Os01g14370.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0016573 - histone acetylation, GO:0004402 - histone acetyltransferase activity, GO:0003712 - transcription cofactor activity		
11168	HAC703	OsHAC703, OsKIX_2, OsHAC1	HISTONE ACETYLTRANSFERASE HAC703	Histone acetyltransferase HAC703, KIX domain protein 2	HISTONE ACETYLTRANSFERASE HAC703		2	Q6YXY2. CBP family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0137450/Os02g0137500					GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0004402 - histone acetyltransferase activity, GO:0006351 - transcription, DNA-dependent, GO:0003712 - transcription cofactor activity, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0016573 - histone acetylation, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
11169	HAC704	OsHAC704, OsKIX_4, OsHAC12	HISTONE ACETYLTRANSFERASE HAC704	Histone acetyltransferase HAC704, KIX domain protein 4	HISTONE ACETYLTRANSFERASE HAC704		6	Q5Z8V7. CBP family.	 Biochemical character	Os06g0704800	LOC_Os06g49130.2, LOC_Os06g49130.1				GO:0004402 - histone acetyltransferase activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0016573 - histone acetylation, GO:0003712 - transcription cofactor activity, GO:0008270 - zinc ion binding		
11170	HAF701	OsHAF701	HISTONE ACETYLTRANSFERASE HAF701	Histone acetyltransferase HAF701	HISTONE ACETYLTRANSFERASE HAF701		6	Q67W65. TAFII250-related family.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0645700	LOC_Os06g43790.1				GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0016568 - chromatin modification	TO:0000276 - drought tolerance	
11171	HAG702	OsHAG702, GCN5	HISTONE ACETYLTRANSFERASE HAG702	Histone acetyltransferase HAG702	HISTONE ACETYLTRANSFERASE HAG702		10	LOC_Os10g28040. Q338B9. GNAT family. rice ortholog of yeast GCN5.	 Biochemical character,  Vegetative organ - Root	Os10g0415900	LOC_Os10g28040.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010015 - root morphogenesis, GO:0010484 - H3 histone acetyltransferase activity, GO:0000123 - histone acetyltransferase complex, GO:0043966 - histone H3 acetylation, GO:0010075 - regulation of meristem growth, GO:0009926 - auxin polar transport, GO:0051302 - regulation of cell division, GO:0048364 - root development, GO:0009908 - flower development, GO:0009416 - response to light stimulus, GO:0006351 - transcription, DNA-dependent	TO:0000656 - root development trait, TO:0000207 - plant height	PO:0006085 - root meristem 
11172	HAG703	OsHAG703	HISTONE ACETYLTRANSFERASE HAG703	Histone acetyltransferase HAG703	HISTONE ACETYLTRANSFERASE HAG703		4	Q7X7L3. GNAT family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0484900	LOC_Os04g40840.1				GO:0006351 - transcription, DNA-dependent, GO:0016573 - histone acetylation, GO:0009737 - response to abscisic acid stimulus, GO:0009294 - DNA mediated transformation, GO:0008283 - cell proliferation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051536 - iron-sulfur cluster binding, GO:0004402 - histone acetyltransferase activity, GO:0009414 - response to water deprivation, GO:0046872 - metal ion binding, GO:0035265 - organ growth, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
11173	HAG704	OsHAG704	HISTONE ACETYLTRANSFERASE HAG704	Histone acetyltransferase HAG704	HISTONE ACETYLTRANSFERASE HAG704		9	Q6ES10. GNAT family.	 Biochemical character	Os09g0347800	LOC_Os09g17850.1				GO:0005737 - cytoplasm, GO:0010485 - H4 histone acetyltransferase activity, GO:0000123 - histone acetyltransferase complex, GO:0006348 - chromatin silencing at telomere, GO:0043967 - histone H4 acetylation		
11174	HAM701	OsHAM701, OsMOF, MOF	HISTONE ACETYLTRANSFERASE HAM701	Histone acetyltransferase HAM701, Males-absent-on-the-first	HISTONE ACETYLTRANSFERASE HAM701		7	Q8LI34. MYST family. chromatin-modifying complex. histone modification protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0626600	LOC_Os07g43360.1				GO:0046872 - metal ion binding, GO:0016573 - histone acetylation, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0004402 - histone acetyltransferase activity, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0042393 - histone binding, GO:0010485 - H4 histone acetyltransferase activity, GO:0000790 - nuclear chromatin, GO:0000123 - histone acetyltransferase complex	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
11175	_	OsELF3-2, OsEF3	_	EARLY FLOWERING 3-2			1	an Ortholog of Arabidopsis EARLY FLOWERING 3.									
11176	NAC96	NAC94, ONAC096, ONAC96, NAC4, OsNAC4	NAC DOMAIN-CONTAINING PROTEIN 96	NAC domain-containing protein 94, NAC domain-containing protein 096, NAC domain-containing protein 96	NAC DOMAIN-CONTAINING PROTEIN 96		7	LOC_Os07g04560. NAC4 in Han et al. 2019.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0138200	LOC_Os07g04560.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0051607 - defense response to virus	TO:0006001 - salt tolerance, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000386 - rice ragged stunt virus resistance	
11178	NAC24	NAC94, ONAC024, ONAC24	NAC DOMAIN-CONTAINING PROTEIN 24	NAC domain-containing protein 94, NAC domain-containing protein 024, NAC domain-containing protein 24	NAC DOMAIN-CONTAINING PROTEIN 24		5	LOC_Os05g34310.	 Other	Os05g0415400	LOC_Os05g34310.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11179	SGO1	OsSGO1	SHUGOSHIN 1	shugoshin 1, SHUGOSHIN1	SHUGOSHIN 1	Ossgo1, Ossgo1-1, Ossgo1-2, sgo1-1	2	the rice  homolog of ZmSGO1. HQ333477. GO:0090173: regulation of synaptonemal complex assembly.	 Other	Os02g0799100	LOC_Os02g55570.1				GO:0007126 - meiosis, GO:0007067 - mitosis, GO:0045132 - meiotic chromosome segregation, GO:0007130 - synaptonemal complex assembly, GO:0000775 - chromosome, centromeric region, GO:0005634 - nucleus		
11180	SGO2	OsSGO2	SHUGOSHIN 2	shugoshin 2, SHUGOSHIN2	SHUGOSHIN 2												
11181	_	Osr2	_	transposable element Osr2, LTR retrotransposon Osr2			4	AL442110: 95121-100070. 	 Other						GO:0032196 - transposition		
11182	_	Osr23	_	transposable element Osr23, LTR retrotransposon Osr23			1	AP002843: 144255-139782.	 Other								
11183	_	Osr35	_	transposable element Osr35, LTR retrotransposon Osr35			10	AC068924: 94924-100611.	 Other								
11184	_	Osr36	_	transposable element Osr36, LTR retrotransposon Osr36			1	AP001551: 59722-64876.	 Other								
11185	_	Osr42	_	transposable element Osr42					 Other								
11186	AHA1	OSA1, OsA1, osAHA1, AHA1	H+-ATPASE 1	plasma membrane H+-ATPase 1, PM H+-ATPase 1, plasma membrane H+ P-Type ATPase 1	H+-ATPASE 1		3	D10207, AJ439999. TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0689300	LOC_Os03g48310.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0006754 - ATP biosynthetic process, GO:0060359 - response to ammonium ion, GO:0010167 - response to nitrate, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism	TO:0006001 - salt tolerance	
11187	AHA2	OSA2, OsA2, osAHA2, AHA2, OsPMA2	H+-ATPASE 2	plasma membrane H+-ATPase 2, PM H+-ATPase 2, plasma membrane H+ P-Type ATPase 2	H+-ATPASE 2		7	D31843, AJ440000. TO:0020098: nitrate sensitivity.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os07g0191200	LOC_Os07g09340.1				GO:0016021 - integral to membrane, GO:0010167 - response to nitrate, GO:0010106 - cellular response to iron ion starvation, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0006754 - ATP biosynthetic process, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0046872 - metal ion binding	TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance	
11188	AHA3	OSA3, OsA3, osAHA3, AHA3, PAM3	H+-ATPASE 3	plasma membrane H+-ATPase 3, PM H+-ATPase 3, plasma membrane H+ P-Type ATPase 3	H+-ATPASE 3		12	AF110268. EF611739, EU190458.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0638700	LOC_Os12g44150.2, LOC_Os12g44150.1				GO:0060359 - response to ammonium ion, GO:0005524 - ATP binding, GO:0006754 - ATP biosynthetic process, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0009651 - response to salt stress, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0006001 - salt tolerance	
11189	AHA7	OSA7, OsA7, osAHA7, AHA7, PAA-Hwa	H+-ATPASE 7	plasma membrane H+-ATPase 7, PM H+-ATPase 7, plasma membrane H+ P-Type ATPase 7, panicle apical abortion-h	H+-ATPASE 7	paa-h	4	AJ440218. Q7XPY2. LOC_Os04g56160. the candidate gene of panicle apical abortion (PAA-Hwa) mutant from a japonica cultivar Hwacheongbyeo (Akter et al. 2014). TO:0000847: panicle anatomy and morphology trait . TO:0020098: nitrate sensitivity.	 Biochemical character,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0656100	LOC_Os04g56160.3, LOC_Os04g56160.2, LOC_Os04g56160.1				GO:0010119 - regulation of stomatal movement, GO:0010167 - response to nitrate, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0005773 - vacuole, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0006754 - ATP biosynthetic process, GO:0060359 - response to ammonium ion, GO:0046872 - metal ion binding	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000371 - yield trait	
11190	AHA8	OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1	H+-ATPASE 8	plasma membrane H+-ATPase 8, PM H+-ATPase 8, plasma membrane H+ P-Type ATPase 8, H+-ATPase 1	H+-ATPASE 8	Osa8, Os-ha1, ha1	3	AJ440219. LOC_Os03g01120. Os-HA1 in Wang et al. 2014. TO:0020102: phosphate content. TO:0020098: nitrate sensitivity. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os03g0100800	LOC_Os03g01120.1				GO:0005524 - ATP binding, GO:0010167 - response to nitrate, GO:0009566 - fertilization, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0006812 - cation transport, GO:0006754 - ATP biosynthetic process	TO:0000078 - root dry weight, TO:0000227 - root length	
11191	AHA9	OSA9, OsA9, osAHA9, AHA9	H+-ATPASE 9	plasma membrane H+-ATPase 9, PM H+-ATPase 9, plasma membrane H+ P-Type ATPase 9	H+-ATPASE 9		3	AJ440220.	 Biochemical character	Os03g0183900	LOC_Os03g08560.1				GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0010023 - proanthocyanidin biosynthetic process, GO:0006754 - ATP biosynthetic process, GO:0006812 - cation transport, GO:0007033 - vacuole organization, GO:0016021 - integral to membrane, GO:0007035 - vacuolar acidification, GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0005524 - ATP binding		
11192	AHA4	OSA4, OsA4, osAHA4, AHA4	H+-ATPASE 4	plasma membrane H+-ATPase 4, PM H+-ATPase 4, plasma membrane H+ P-Type ATPase 4	H+-ATPASE 4		6		 Biochemical character								
11193	AHA5	OSA5, OsA5, osAHA5, AHA5	H+-ATPASE 5	plasma membrane H+-ATPase 5, PM H+-ATPase 5, plasma membrane H+ P-Type ATPase 5	H+-ATPASE 5		2	TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0006754 - ATP biosynthetic process, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0019829 - cation-transporting ATPase activity, GO:0010167 - response to nitrate, GO:0046872 - metal ion binding		
11194	AHA6	OSA6, OsA6, osAHA6, AHA6	H+-ATPASE 6	plasma membrane H+-ATPase 6, PM H+-ATPase 6, plasma membrane H+ P-Type ATPase 6	H+-ATPASE 6		2		 Biochemical character	Os02g0797300	LOC_Os02g55400.1				GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0010119 - regulation of stomatal movement, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0006754 - ATP biosynthetic process		
11195	AHA10	OSA10, OsA10, osAHA10, AHA10	H+-ATPASE 10	plasma membrane H+-ATPase 10, PM H+-ATPase 10, plasma membrane H+ P-Type ATPase 10	H+-ATPASE 10		6		 Biochemical character	Os06g0181500	LOC_Os06g08310.1						
11196	_	OsSPS1, SPS1	_	solanesyl diphosphate synthase 1			6	LOC_Os06g46450. Q653T6. GO:0052923:all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity.	 Biochemical character	Os06g0678200	LOC_Os06g46450.2, LOC_Os06g46450.1				GO:0005739 - mitochondrion, GO:0008299 - isoprenoid biosynthetic process, GO:0004161 - dimethylallyltranstransferase activity, GO:0006744 - ubiquinone biosynthetic process, GO:0009790 - embryonic development, GO:0050347 - trans-octaprenyltranstransferase activity, GO:0046872 - metal ion binding, GO:0009507 - chloroplast		
11197	_	OsSPS2, SPS2	_	solanesyl diphosphate synthase 2			5	LOC_Os05g50550. Q75HZ9. GO:0052923:all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity.	 Biochemical character	Os05g0582300	LOC_Os05g50550.1				GO:0050347 - trans-octaprenyltranstransferase activity, GO:0010236 - plastoquinone biosynthetic process, GO:0008299 - isoprenoid biosynthetic process, GO:0046872 - metal ion binding, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0015979 - photosynthesis		
11198	_	OsFPPS1, FPPS1, FPPS, OsFPS	_	farnesyl diphosphate synthase 1, farnesyl diphosphate synthase, FDP synthase			1	D85317.	 Biochemical character	Os01g0703400	LOC_Os01g50760.1				GO:0008299 - isoprenoid biosynthetic process, GO:0004161 - dimethylallyltranstransferase activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0004337 - geranyltranstransferase activity	TO:0000401 - plant growth hormone sensitivity	
11199	_	OsFPPS2, FPPS2	_	farnesyl diphosphate synthase 2			5	AB021979.	 Biochemical character	Os05g0543400	LOC_Os05g46580.1				GO:0008299 - isoprenoid biosynthetic process, GO:0004161 - dimethylallyltranstransferase activity, GO:0004337 - geranyltranstransferase activity		
11200	_	OsFPPS3	_	farnesyl diphosphate synthase 3			4		 Biochemical character	Os04g0657100	LOC_Os04g56210.1				GO:0008299 - isoprenoid biosynthetic process, GO:0004337 - geranyltranstransferase activity, GO:0004161 - dimethylallyltranstransferase activity		
11201	GGPPS1	OsGGPPS1	GERANYLGERANYL DIPHOSPHATE SYNTHASE 1	geranylgeranyl diphosphate synthase 1, GGPP synthase 1	GERANYLGERANYL DIPHOSPHATE SYNTHASE 1	osggpps-1	7	LOC_Os07g39270	 Biochemical character,  Coloration - Chlorophyll	Os07g0580900	LOC_Os07g39270.2, LOC_Os07g39270.1				GO:0009513 - etioplast, GO:0015995 - chlorophyll biosynthetic process, GO:0042651 - thylakoid membrane, GO:0009507 - chloroplast, GO:0008299 - isoprenoid biosynthetic process, GO:0004311 - farnesyltranstransferase activity, GO:0005739 - mitochondrion, GO:0005783 - endoplasmic reticulum, GO:0009570 - chloroplast stroma		
11202	GGPPS2	OsGGPPS2, OsGRP, GRP	GERANYLGERANYL DIPHOSPHATE SYNTHASE 2	geranylgeranyl diphosphate synthase 2, GGPPS recruiting protein	GERANYLGERANYL DIPHOSPHATE SYNTHASE 2		2	LOC_Os02g44780.	 Biochemical character	Os02g0668100	LOC_Os02g44780.3, LOC_Os02g44780.2, LOC_Os02g44780.1				GO:0016740 - transferase activity, GO:0008299 - isoprenoid biosynthetic process		
11203	SPS11	sps11, OsSPS11, OsSPS5, SPS5	SUCROSE PHOSPHATE SYNTHASE 11	sucrose phosphate synthase 11	SUCROSE PHOSPHATE SYNTHASE 11		11	LOC_Os11g12810. Q53JI9. BI809390. OsPSP5 in Almadanim et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0236100	LOC_Os11g12810.1				GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0046524 - sucrose-phosphate synthase activity, GO:0005986 - sucrose biosynthetic process	TO:0000303 - cold tolerance	
11204	SPS8	OsSPS8, OsSPS4, SPS4	SUCROSE PHOSPHATE SYNTHASE 8	sucrose phosphate synthase 8	SUCROSE PHOSPHATE SYNTHASE 8		8	LOC_Os08g20660. Q6ZHZ1. CB667221, CB667222, CB666200, CF326019, CB678310, CA999246, CB638627, CB638628, CF309892, CB639268. OsSPS4 in Almadanim et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0301500	LOC_Os08g20660.2, LOC_Os08g20660.1				GO:0005986 - sucrose biosynthetic process, GO:0046524 - sucrose-phosphate synthase activity, GO:0005886 - plasma membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
11205	SPS2	OsSPS2	SUCROSE PHOSPHATE SYNTHASE 2	sucrose phosphate synthase 2	SUCROSE PHOSPHATE SYNTHASE 2		2	B7F7B9. CB683436, CB683879, CA763243, AU197546, AU062665.	 Biochemical character	Os02g0184400	LOC_Os02g09170.2, LOC_Os02g09170.1				GO:0046524 - sucrose-phosphate synthase activity, GO:0005986 - sucrose biosynthetic process, GO:0005886 - plasma membrane		
11206	SPS6	OsSPS6	SUCROSE PHOSPHATE SYNTHASE 6	sucrose phosphate synthase 6	SUCROSE PHOSPHATE SYNTHASE 6		6	LOC_Os06g43630. Q67WN8. CB635596, CB635597, CB645118, CB645119, CB641942, CB641943, CB649251, CB649252, CB669304, CB641944, CA999208, CB638899, CB638900, C25857, CF328390.	 Biochemical character	Os06g0643800	LOC_Os06g43630.1				GO:0005886 - plasma membrane, GO:0046524 - sucrose-phosphate synthase activity, GO:0005986 - sucrose biosynthetic process		
11207	_	OsPPT1a	_	p-hydroxybenzoate polyprenyltransferase 1a			8		 Biochemical character	Os08g0322600	LOC_Os08g23320.1				GO:0006744 - ubiquinone biosynthetic process, GO:0009790 - embryonic development, GO:0047293 - 4-hydroxybenzoate nonaprenyltransferase activity, GO:0016021 - integral to membrane		
11208	_	OsPPT1b	_	p-hydroxybenzoate polyprenyltransferase 1b													
11209	_	OsPPT1c	_	p-hydroxybenzoate polyprenyltransferase 1c													
11210	_	OsHGGT, HGGT, OsHST	_	homogentisic acid geranylgeranyl transferase, homogentisic acid solanesyl transferase			6	AY222862. Q0DAK7. vitamin E biosynthetic enzyme. OsHST (homogentisic acid solanesyl transferase) in Hwang et al. 2014.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0646900	LOC_Os06g43880.1				GO:0016021 - integral to membrane, GO:0004659 - prenyltransferase activity, GO:0006979 - response to oxidative stress	TO:0002657 - oxidative stress	
11211	_	OsPDCD5, PDCD5	_	programmed cell death 5			5	AAP92158. AY327105. AY749430 (alternatively spliced variant). a Homolog of the Mammalian PDCD5.		Os05g0547850	LOC_Os05g47446.2, LOC_Os05g47446.1				GO:0003677 - DNA binding		
11213	_		_	Ferroportin1, OsFerroportin, Ferroportin			6	Q5Z922. GO:0035444:nickel cation transmembrane transport.	 Biochemical character	Os06g0560000	LOC_Os06g36450.1				GO:0016021 - integral to membrane, GO:0015087 - cobalt ion transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane, GO:0005381 - iron ion transmembrane transporter activity, GO:0015099 - nickel ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0055068 - cobalt ion homeostasis		
11214	_	OPT, OsOPT7, OPT7	_	Oligopeptide Transporter, Oligopeptide Transporter 7		opt7-1, opt7-2	3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0751100	LOC_Os03g54000.2, LOC_Os03g54000.1				GO:0055085 - transmembrane transport, GO:0048316 - seed development, GO:0006875 - cellular metal ion homeostasis, GO:0005886 - plasma membrane, GO:0010106 - cellular response to iron ion starvation, GO:0055072 - iron ion homeostasis	TO:0000224 - iron sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0000025 - root tip , PO:0003011 - root vascular system , PO:0009006 - shoot system 
11215	_	OsEnS-107, EnS-107, OsI85, I85, ICL, Osl85, l43, Osl43, OsL85	_	isocitrate lyase, endosperm-specific gene 107			7	AF251075. Osl85 in Wu and Yang 2016. l43 in Fang et al. 2016.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os07g0529000	LOC_Os07g34520.3, LOC_Os07g34520.2, LOC_Os07g34520.1				GO:0004451 - isocitrate lyase activity, GO:0019752 - carboxylic acid metabolic process, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding	TO:0000249 - leaf senescence, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance	PO:0001054 - 4 leaf senescence stage 
11216	_	OsPR2, Gns1, OsEGL1	_	(1,3;1,4)-b-glucanase, (1,3;1,4)-beta-glucanase, pathogenesis-related gene 2, endo-(1,3;1,4)-beta-glucanase 1			5	X58877. AY768944. a rice beta-glucanase gene. LOC_Os05g31140.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0375400	LOC_Os05g31140.3, LOC_Os05g31140.2, LOC_Os05g31140.1				GO:0048046 - apoplast, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0009651 - response to salt stress, GO:0009817 - defense response to fungus, incompatible interaction, GO:0043169 - cation binding, GO:0009617 - response to bacterium, GO:0050832 - defense response to fungus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0010332 - response to gamma radiation	TO:0000167 - cytokinin sensitivity, TO:0000074 - blast disease, TO:0000401 - plant growth hormone sensitivity, TO:0000173 - ethylene sensitivity, TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait	
11217	_	OsRD22, RD22, OsBURP16, BURP16	_	polygalacturonase isoenzyme 1 beta subunit, BURP domain-containing protein 16, beta subunit of polygalacturonase 1, polygalacturonase 1 beta subunit, non-catalytic PG1beta subunit			10	Q7XES5. AF251069.	 Tolerance and resistance - Stress tolerance	Os10g0409400	LOC_Os10g26940.1				GO:0009409 - response to cold, GO:0010332 - response to gamma radiation	TO:0000303 - cold tolerance	
11218	_	akin-b, akin-beta	_	b-subunit of SnRK1, beta-subunit of SnRK1			5		 Tolerance and resistance - Stress tolerance	Os05g0491200	LOC_Os05g41220.2, LOC_Os05g41220.1				GO:0043562 - cellular response to nitrogen levels		
11219	ADC2	ADCa, OsAdc2, OsADC2	ARGININE DECARBOXYLASE 2	Arginine decarboxylase a, Arginine decarboxylase 2	ARGININE DECARBOXYLASE 2		4	LOC_Os04g01690. Q7XRA1. FJ746894.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0107600 	LOC_Os04g01690.3, LOC_Os04g01690.2, LOC_Os04g01690.1				GO:0006596 - polyamine biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0008792 - arginine decarboxylase activity, GO:0009446 - putrescine biosynthetic process, GO:0009651 - response to salt stress, GO:0006527 - arginine catabolic process	TO:0006001 - salt tolerance	
11220	ODCA	ODCa, OsODC1, ODC1	ORNITHINE DECARBOXYLASE A	Ornithine decarboxylase a, ornithine decarboxylase 1	ORNITHINE DECARBOXYLASE A		9	LOC_Os09g37120.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0543400	LOC_Os09g37120.1				GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0003824 - catalytic activity	TO:0006001 - salt tolerance	
11221	ODCB	ODCb, OsODC3, ODC3	ORNITHINE DECARBOXYLASE B	Ornithine decarboxylase b, ornithine decarboxylase 3	ORNITHINE DECARBOXYLASE B		2	LOC_Os02g28110.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0482400	LOC_Os02g28110.1				GO:0003824 - catalytic activity, GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process	TO:0006001 - salt tolerance	
11222	PAOA	PAOa, OsPAO2, PAO2, OsPAOa	POLYAMINE OXIDASE A	Polyamine oxidase a, Polyamine oxidase 2	POLYAMINE OXIDASE A		3	LOC_Os03g09810. FAD-containing polyamide oxidase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0193400	LOC_Os03g09810.1				GO:0016491 - oxidoreductase activity, GO:0006598 - polyamine catabolic process, GO:0005576 - extracellular region, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
11223	PAOB	PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2	POLYAMINE OXIDASE B	Polyamine oxidase b, Polyamine oxidase 6	POLYAMINE OXIDASE B		9	LOC_Os09g20260. FAD-containing polyamide oxidase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0368200	LOC_Os09g20260.1				GO:0006598 - polyamine catabolic process, GO:0016021 - integral to membrane, GO:0005576 - extracellular region, GO:0009651 - response to salt stress, GO:0016491 - oxidoreductase activity	TO:0006001 - salt tolerance	
11224	_	DAO	_	Copper amine oxidase			7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0572100	LOC_Os07g38440.1				GO:0008131 - amine oxidase activity, GO:0005618 - cell wall, GO:0048038 - quinone binding, GO:0009308 - amine metabolic process, GO:0005507 - copper ion binding		
11225	FTL1	FTL, FT-L1, OsFTL1, FTL1	FLOWERING TIME LIKE GENE 1	FT-like gene 1			1		 Reproductive organ - Heading date	Os01g0218500	LOC_Os01g11940.1					TO:0002616 - flowering time	
11226	FTL4	OsFT, osFT, FT-L 4, OsFTL4, FT-L4	FLOWERING TIME LIKE GENE 4	FT-like gene 4			9	AQ289409.		Os09g0513500	LOC_Os09g33850.1						
11227	FTL5	FT-L 5, OsFTL5, FT-L5	FLOWERING TIME LIKE GENE 5	FT-like gene 5			2	AP004124.									
11228	FTL6	FT-L 6, OsFTL6, FT-L6	FLOWERING TIME LIKE GENE 6	FT-like gene 6			4			Os04g0488400	LOC_Os04g41130.1						
11229	FTL7	FT-L 7, OsFTL7	FLOWERING TIME LIKE GENE 7	FT-like gene 7			12			Os12g0232300	LOC_Os12g13030.1						
11230	FTL8	FT-L 8, OsFTL8	FLOWERING TIME LIKE GENE 8	FT-like gene 8			1			Os01g0202700	LOC_Os01g10590.1						
11231	FTL10	OsFTL10	FLOWERING TIME LIKE GENE 10	FT-like gene 10, Flowering Locus T-like 10			5	GO:1902584: positive regulation of response to water deprivation.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os05g0518000	LOC_Os05g44180.1				GO:0009735 - response to cytokinin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0010555 - response to mannitol stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:2000028 - regulation of photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
11232	FTL11	OsFTL11	FLOWERING TIME LIKE GENE 11	FT-like gene 11			11			Os11g0293800	LOC_Os11g18870.1						
11233	FTL12	OsFTL12, FT-L11	FLOWERING TIME LIKE GENE 12	FT-like gene 12, FT-like gene 11			6	FT-L11 in Ishikawa et al. 2005.		Os06g0552900	LOC_Os06g35940.1						
11234	FTL13	OsFTL13	FLOWERING TIME LIKE GENE 13	FT-like gene 13			2			Os02g0232300	LOC_Os02g13830.1						
11235	_	Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2	_				12	ABA95936. Histone deacetylase. SIR2-like gene.		Os12g0179800	LOC_Os12g07950.3, LOC_Os12g07950.2, LOC_Os12g07950.1				GO:0031348 - negative regulation of defense response, GO:0033552 - response to vitamin B3, GO:0034355 - NAD salvage, GO:0070403 - NAD binding, GO:0042742 - defense response to bacterium, GO:0005739 - mitochondrion, GO:0005634 - nucleus		
11236	_	OsFAD7	_				3	GO:0080167:response to karrikin.	 Tolerance and resistance - Stress tolerance	Os03g0290300	LOC_Os03g18070.1				GO:0042389 - omega-3 fatty acid desaturase activity, GO:0009941 - chloroplast envelope, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0009409 - response to cold, GO:0005783 - endoplasmic reticulum		
11238	SPL3	OsSPL3	RICE SQUAMOSA PROMOTER-BINDING-LIKE 3	Squamosa promoter-binding-like protein 3, SQUAMOSA Promoter-Binding Protein-Like 3	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3		2	A3A2Z8.	 Other	Os02g0139400	LOC_Os02g04680.2, LOC_Os02g04680.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0045449 - regulation of transcription		
11239	SPL5	OsSPL5	RICE SQUAMOSA PROMOTER-BINDING-LIKE 5	Squamosa promoter-binding-like protein 5	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 5		2	Q0E3F8.	 Other	Os02g0177300	LOC_Os02g08070.1				GO:0045449 - regulation of transcription, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0006350 - transcription		
11240	SPL6	OsSPL6	RICE SQUAMOSA PROMOTER-BINDING-LIKE 6	Squamosa promoter-binding-like protein 6	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 6		3	Q75LH6.	 Other	Os03g0833300	LOC_Os03g61760.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus		
11241	SPL17	OsSPL17	RICE SQUAMOSA PROMOTER-BINDING-LIKE 17	Squamosa promoter-binding-like protein 17	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 17		9	A3C057. LOC_Os09g31438.	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching,  Other	Os09g0491532	LOC_Os09g31438.1				GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0046872 - metal ion binding	TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000050 - inflorescence branching	
11242	SPL18	OsSPL18	RICE SQUAMOSA PROMOTER-BINDING-LIKE 18	Squamosa promoter-binding-like protein 18	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 18		9	Q0J0K1. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Other	Os09g0507100	LOC_Os09g32944.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0042127 - regulation of cell proliferation, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0046872 - metal ion binding	TO:0000590 - grain weight, TO:0002759 - grain number, TO:0000149 - seed width, TO:0000399 - grain thickness, TO:0000040 - panicle length, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
11243	SPL19	OsSPL19	RICE SQUAMOSA PROMOTER-BINDING-LIKE 19	Squamosa promoter-binding-like protein 19	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 19		11	Q2R3Y1.	 Other	Os11g0496600	LOC_Os11g30370.1				GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
11244	LG2	OsLG2, OsbZIP11, BZIP11	LIGULELESS 2	OsLIGULELESS2, LIGULELESS2, OsLIGULELESS 2, b-ZIP transcription factor 11	b-ZIP TRANSCRIPTION FACTOR 11 	oslg2	1	LOC_Os01g64020. A homologue (LOC_Os01g64020) of ZmLG2 is present in the rice genome. We did not observe the liguleless phenotypes in the T-DNA knockout mutants in the oslg2 homologous gene, perhaps due to genome duplication in rice as well (Lee et al. 2007).	 Other	Os01g0859500	LOC_Os01g64020.2, LOC_Os01g64020.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
11245	_	lg1	_	liguleless1			4	AL442117. AF488772.	 Other								
11246	_	OsLP, PR-5, 14b	_	osmotin protein, Osmotin			3	an osmotin-like protein. L76377. D15454. alpha-amylase/trypsin inhibitor in Sasaki et al. 1994. PR5/thaumatin.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0663400	LOC_Os03g46060.1				GO:0009817 - defense response to fungus, incompatible interaction, GO:0009651 - response to salt stress	TO:0000095 - osmotic response sensitivity	
11247	NHX4	OsNHX4	NA+/H+ ANTIPORTER 4	Na+/H+ antiporter 4, NHX-type antiporter 4	NA+/H+ ANTIPORTER 4		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0318500	LOC_Os06g21360.1				GO:0006885 - regulation of pH, GO:0016021 - integral to membrane, GO:0015385 - sodium:hydrogen antiporter activity		
11248	NHX5	OsNHX5	NA+/H+ ANTIPORTER 5	Na+/H+ antiporter 5, NHX-type antiporter 5	NA+/H+ ANTIPORTER 5		9	AB531434. AU174198.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0286400	LOC_Os09g11450.2, LOC_Os09g11450.1				GO:0015385 - sodium:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0016021 - integral to membrane		
11249	NHX2	OsNHX2	NA+/H+ ANTIPORTER 2	Na+/H+ antiporter 2, NHX-type antiporter 2	NA+/H+ ANTIPORTER		11	AB531435. C91861. LOC_Os11g42790.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0648000	LOC_Os11g42790.1				GO:0009651 - response to salt stress, GO:0015385 - sodium:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11250	_	OsMyb1R, LHY-like_chr.2	_	MYB transcription factor OsMyb1R			2	a rice ortholog of Arabidopsis gene for circadian clock component.	 Tolerance and resistance - Stress tolerance	Os02g0685200	LOC_Os02g46030.1				GO:0003677 - DNA binding, GO:0007623 - circadian rhythm, GO:0003682 - chromatin binding		
11251	RCN11	Xyl, OsXylT, RCN11/OsXylT	REDUCED CULM NUMBER 11	beta 1, 2-xylosyltransferase, reduced culm number11		rcn11	8	AJ621918, AJ621917.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os08g0503800	LOC_Os08g39380.1				GO:0042285 - xylosyltransferase activity, GO:0005794 - Golgi apparatus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009845 - seed germination, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0005797 - Golgi medial cisterna, GO:0006487 - protein amino acid N-linked glycosylation, GO:0031204 - posttranslational protein targeting to membrane, translocation	TO:0000615 - abscisic acid sensitivity, TO:0000432 - temperature response trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000237 - water stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0007057 - 0 seed germination stage , PO:0006213 - root aerenchyma 
11252	_		_	Xylem Cys proteinase 2			2			Os02g0715000	LOC_Os02g48450.1				GO:0005634 - nucleus, GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity, GO:0000325 - plant-type vacuole, GO:0005618 - cell wall, GO:0010623 - developmental programmed cell death		
11253	NDART1-0	nDART1-0	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-0	non-autonomous DNA-based active rice transposon 1-0			3		 Other						GO:0032196 - transposition		
11254	NDART1-1	nDART1-1	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-1	non-autonomous DNA-based active rice transposon 1-1			9		 Other						GO:0032196 - transposition		
11255	NDART1-2	nDART1-2	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-2	non-autonomous DNA-based active rice transposon 1-2			12		 Other						GO:0032196 - transposition		
11256	NDART1-3(3-1)	nDART1-3(3-1)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-3(3-1)	non-autonomous DNA-based active rice transposon 1-3(3-1)			3		 Other						GO:0032196 - transposition		
11257	NDART1-3(3-2)	nDART1-3(3-2)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-3(3-2)	non-autonomous DNA-based active rice transposon 1-3(3-2)			3		 Other						GO:0032196 - transposition		
11258	NDART1-3(6)	nDART1-3(6)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-3(6)	non-autonomous DNA-based active rice transposon 1-3(6)			6		 Other						GO:0032196 - transposition		
11259	NDART1-3(8)	nDART1-3(8)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-3(8)	non-autonomous DNA-based active rice transposon 1-3(8)			8		 Other						GO:0032196 - transposition		
11260	NDART1-5	nDART1-5	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-5	non-autonomous DNA-based active rice transposon 1-5			3		 Other						GO:0032196 - transposition		
11261	NDART1-6	nDART1-6	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-6	non-autonomous DNA-based active rice transposon 1-6			2		 Other						GO:0032196 - transposition		
11262	NDART1-7	nDART1-7	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-7	non-autonomous DNA-based active rice transposon 1-7			4		 Other						GO:0032196 - transposition		
11263	NDART1-9	nDART1-9	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-9	non-autonomous DNA-based active rice transposon 1-9			2		 Other						GO:0032196 - transposition		
11264	NDART1-10	nDART1-10	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-10	non-autonomous DNA-based active rice transposon 1-10			5		 Other						GO:0032196 - transposition		
11265	NDART1-11	nDART1-11	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-11	non-autonomous DNA-based active rice transposon 1-11			3		 Other						GO:0032196 - transposition		
11266	NDART1-12	nDART1-12	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-12	non-autonomous DNA-based active rice transposon 1-12			1		 Other						GO:0032196 - transposition		
11267	ADART1-27	aDart1-27	AUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-27				6		 Other						GO:0032196 - transposition		
11268	DART1-1	Dart1-1	DNA-BASED ACTIVE RICE TRANSPOSON 1-1				10		 Other						GO:0032196 - transposition		
11269	DART1-2	Dart1-2	DNA-BASED ACTIVE RICE TRANSPOSON 1-2				12		 Other						GO:0032196 - transposition		
11270	DART1-13	Dart1-13	DNA-BASED ACTIVE RICE TRANSPOSON 1-13				10		 Other						GO:0032196 - transposition		
11271	DART1-16	Dart1-16	DNA-BASED ACTIVE RICE TRANSPOSON 1-16				6		 Other						GO:0032196 - transposition		
11272	DART1-19	Dart1-19	DNA-BASED ACTIVE RICE TRANSPOSON 1-19				1		 Other						GO:0032196 - transposition		
11273	DART1-27	Dart1-27	DNA-BASED ACTIVE RICE TRANSPOSON 1-27				6		 Other						GO:0032196 - transposition		
11274	DART1-28	Dart1-28	DNA-BASED ACTIVE RICE TRANSPOSON 1-28				11		 Other						GO:0032196 - transposition		
11275	DART1-34	Dart1-34	DNA-BASED ACTIVE RICE TRANSPOSON 1-34				11		 Other						GO:0032196 - transposition		
11276	DART1-38	Dart1-38	DNA-BASED ACTIVE RICE TRANSPOSON 1-38				11		 Other						GO:0032196 - transposition		
11277	_	CKI	_	casein kinase I, Casein Kinase I-Like Protein			1	AP003273, BAB92346.1.	 Biochemical character						GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma		
11278	_	OsHOL1	_	HARMLESS TO OZONE LAYER 1			3	CT835256.	 Biochemical character	Os03g0843800	LOC_Os03g62670.3, LOC_Os03g62670.2, LOC_Os03g62670.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity		
11279	_	OsHOL2	_	HARMLESS TO OZONE LAYER 2			6		 Biochemical character	Os06g0153900	LOC_Os06g06040.7, LOC_Os06g06040.6, LOC_Os06g06040.5, LOC_Os06g06040.4, LOC_Os06g06040.3, LOC_Os06g06040.2, LOC_Os06g06040.1				GO:0005886 - plasma membrane, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009941 - chloroplast envelope		
11280	NDART(l)1-5	nDart(l)1-5	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-5	non-autonomous DNA-based active rice transposon (I) 1-5			3		 Other						GO:0032196 - transposition		
11281	NDART(l)1-21	nDart(l)1-21	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-21	non-autonomous DNA-based active rice transposon (I) 1-21			1		 Other						GO:0032196 - transposition		
11282	NDART(l)1-22	nDart(l)1-22	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-22	non-autonomous DNA-based active rice transposon (I) 1-22			12		 Other						GO:0032196 - transposition		
11283	NDART(l)1-23	nDart(l)1-23	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-23	non-autonomous DNA-based active rice transposon (I) 1-23			6		 Other						GO:0032196 - transposition		
11284	NDART(l)1-24	nDart(l)1-24	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-24	non-autonomous DNA-based active rice transposon (I) 1-24			2		 Other						GO:0032196 - transposition		
11285	NDART(l)1-25	nDart(l)1-25	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-25	non-autonomous DNA-based active rice transposon (I) 1-25			1		 Other						GO:0032196 - transposition		
11286	NDART(l)1-26	nDart(l)1-26	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-26	non-autonomous DNA-based active rice transposon (I) 1-26			11		 Other						GO:0032196 - transposition		
11287	NDART1-101	nDart1-101	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-101	non-autonomous DNA-based active rice transposon 1-101			7		 Other						GO:0032196 - transposition		
11288	NDART1-102	nDart1-102	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-102	non-autonomous DNA-based active rice transposon 1-102			1		 Other						GO:0032196 - transposition		
11289	NDART1-103	nDart1-103	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-103	non-autonomous DNA-based active rice transposon 1-103			10		 Other						GO:0032196 - transposition		
11290	NDART1-104	nDart1-104	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-104	non-autonomous DNA-based active rice transposon 1-104			6		 Other						GO:0032196 - transposition		
11291	NDART1-201	nDart1-201	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-201	non-autonomous DNA-based active rice transposon 1-201			12		 Other						GO:0032196 - transposition		
11292	_	OsRPK1, OsJNipponRPK1, OsI219RPK1, OsI9311RPK1	_	receptor-like protein kinase 1			1	GI:53792194, GI:380710172, GI:218188631.	 Biochemical character	Os01g0607900	LOC_Os01g42294.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
11293	_	OsJ_RLL1	_				5	a leucine rich repeat receptor-like kinase. GI:47777361.	 Biochemical character	Os05g0588250	LOC_Os05g51070.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
11294	AGP1	OsAGP1	ARABINOGALACTAN PROTEIN 1	Arabinogalactan protein 1	ARABINOGALACTAN PROTEIN 1		8	Q6Z232. EU282461. GO:0035670: plant-type ovary development. TO:0020111: ovary development trait.	 Reproductive organ - Inflorescence,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0482300	LOC_Os08g37630.1				GO:0005773 - vacuole, GO:0009414 - response to water deprivation, GO:0032578 - aleurone grain membrane, GO:0031225 - anchored to membrane, GO:0010229 - inflorescence development, GO:0008585 - female gonad development, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0009073 - stigma , PO:0009072 - plant ovary 
11295	AGP2	OsAGP2	ARABINOGALACTAN PROTEIN 2	Arabinogalactan protein 2	ARABINOGALACTAN PROTEIN 2		1	LOC_Os01g71170.	 Tolerance and resistance - Stress tolerance	Os01g0937900	LOC_Os01g71170.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11296	AGP3	OsAGP3	ARABINOGALACTAN PROTEIN 3	Arabinogalactan protein 3	ARABINOGALACTAN PROTEIN 3		3	up-regulated after fertilization (Abiko et al. 2013).	 Tolerance and resistance - Stress tolerance	Os03g0188500					GO:0009651 - response to salt stress, GO:0009790 - embryonic development, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11297	AGP4	OsAGP4	ARABINOGALACTAN PROTEIN 4	Arabinogalactan protein 4	ARABINOGALACTAN PROTEIN 4		4	LOC_Os04g37770.		Os04g0450701	LOC_Os04g37770.1						
11298	AGP5	OsAGP5	ARABINOGALACTAN PROTEIN 5	Arabinogalactan protein 5	ARABINOGALACTAN PROTEIN 5		4			Os04g0545250							
11299	AGP6	OsAGP6	ARABINOGALACTAN PROTEIN 6	Arabinogalactan protein 6	ARABINOGALACTAN PROTEIN 6		5	LOC_Os05g37110.		Os05g0443200	LOC_Os05g37110.1						
11300	AGP7	OsAGP7	ARABINOGALACTAN PROTEIN 7	Arabinogalactan protein 7	ARABINOGALACTAN PROTEIN 7		6	PO:0030123: panicle inflorescence.		Os06g0284900	LOC_Os06g17450.1						PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009066 - anther 
11301	AGP8	OsAGP8	ARABINOGALACTAN PROTEIN 8	Arabinogalactan protein 8	ARABINOGALACTAN PROTEIN 8		7	LOC_Os07g28660. Os07g0469800 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os07g28660						
11302	AGP9	OsAGP9	ARABINOGALACTAN PROTEIN 9	Arabinogalactan protein 9	ARABINOGALACTAN PROTEIN 9		10			Os10g0377150							
11303	AGP10	OsAGP10	ARABINOGALACTAN PROTEIN 10	Arabinogalactan protein 10	ARABINOGALACTAN PROTEIN 10		8	LOC_Os08g38250.		Os08g0490400	LOC_Os08g38250.1						
11304	AGP11	OsAGP11	ARABINOGALACTAN PROTEIN 11	Arabinogalactan protein 11	ARABINOGALACTAN PROTEIN 11		4	Os04g0492200 (in Rap3 (build5)). LOC_Os04g41480.			LOC_Os04g41480						
11305	AGP12	OsAGP12	ARABINOGALACTAN PROTEIN 12	Arabinogalactan protein 12	ARABINOGALACTAN PROTEIN 12		1	LOC_Os01g02010.		Os01g0110200	LOC_Os01g02010.1						
11306	AGP13	OsAGP13	ARABINOGALACTAN PROTEIN 13	Arabinogalactan protein 13	ARABINOGALACTAN PROTEIN 13		7	Os07g0590800 (in Rap1 (build3)). LOC_Os07g40130.		Os07g0590700	LOC_Os07g40130.1						PO:0008016 - vegetative shoot apical meristem , PO:0009049 - inflorescence 
11307	AGP14	OsAGP14, OsAGPEP2	ARABINOGALACTAN PROTEIN 14	Arabinogalactan protein 14, arabinogalactan peptide 2	ARABINOGALACTAN PROTEIN 14		1	A9UGV6. EU282463. LOC_Os01g37950.		Os01g0559900	LOC_Os01g37950.1				GO:0032578 - aleurone grain membrane, GO:0005773 - vacuole, GO:0031225 - anchored to membrane		
11308	AGP15	OsAGP15	ARABINOGALACTAN PROTEIN 15	Arabinogalactan protein 15	ARABINOGALACTAN PROTEIN 15		1	LOC_Os01g40950.	 Tolerance and resistance - Stress tolerance	Os01g0592500	LOC_Os01g40950.1				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0025034 - leaf , PO:0009010 - seed , PO:0009049 - inflorescence 
11309	AGP16	OsAGP16	ARABINOGALACTAN PROTEIN 16	Arabinogalactan protein 16	ARABINOGALACTAN PROTEIN 16		1	LOC_Os01g46850.aPO:0030123: panicle inflorescence.		Os01g0657000	LOC_Os01g46850.1				GO:0009555 - pollen development		PO:0009073 - stigma , PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0009049 - inflorescence 
11310	AGP17	OsAGP17	ARABINOGALACTAN PROTEIN 17	Arabinogalactan protein 17	ARABINOGALACTAN PROTEIN 17		1	LOC_Os01g55220.		Os01g0756900	LOC_Os01g55220.1						PO:0008016 - vegetative shoot apical meristem 
11311	AGP18	OsAGP18	ARABINOGALACTAN PROTEIN 18	Arabinogalactan protein 18	ARABINOGALACTAN PROTEIN 18		1	LOC_Os01g57030. Os01g0778300 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os01g57030						
11312	AGP19	OsAGP19, OsAGPEP1	ARABINOGALACTAN PROTEIN 19	Arabinogalactan protein 19, arabinogalactan peptide 1	ARABINOGALACTAN PROTEIN 19		1	A9UGV5. EU282462. LOC_Os01g57040.		Os01g0778400	LOC_Os01g57040.1				GO:0005773 - vacuole, GO:0032578 - aleurone grain membrane, GO:0031225 - anchored to membrane		PO:0009047 - stem 
11313	AGP20	OsAGP20	ARABINOGALACTAN PROTEIN 20	Arabinogalactan protein 20	ARABINOGALACTAN PROTEIN 20		2	LOC_Os02g16500.	 Tolerance and resistance - Stress tolerance	Os02g0264800	LOC_Os02g16500.1				GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0008016 - vegetative shoot apical meristem 
11314	AGP21	OsAGP21	ARABINOGALACTAN PROTEIN 21	Arabinogalactan protein 21	ARABINOGALACTAN PROTEIN 21		2	LOC_Os02g48710.		Os02g0718600	LOC_Os02g48710.1						
11315	AGP22	OsAGP22	ARABINOGALACTAN PROTEIN 22	Arabinogalactan protein 22	ARABINOGALACTAN PROTEIN 22		2			Os02g0718100							
11316	AGP23	OsAGP23	ARABINOGALACTAN PROTEIN 23	Arabinogalactan protein 23	ARABINOGALACTAN PROTEIN 23		5	LOC_Os05g12580.	 Tolerance and resistance - Stress tolerance	Os05g0217000	LOC_Os05g12580.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11317	AGP24	OsAGP24	ARABINOGALACTAN PROTEIN 24	Arabinogalactan protein 24	ARABINOGALACTAN PROTEIN 24		6	LOC_Os06g21400.	 Tolerance and resistance - Stress tolerance	Os06g0318800					GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
11318	AGP25	OsAGP25	ARABINOGALACTAN PROTEIN 25	Arabinogalactan protein 25	ARABINOGALACTAN PROTEIN 25		6	LOC_Os06g21410.	 Tolerance and resistance - Stress tolerance	Os06g0318900					GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009049 - inflorescence , PO:0009010 - seed 
11319	AGP26	OsAGP26	ARABINOGALACTAN PROTEIN 26	Arabinogalactan protein 26	ARABINOGALACTAN PROTEIN 26		6	LOC_Os06g30920.		Os06g0505700	LOC_Os06g30920.1						
11320	AGP27	OsAGP27	ARABINOGALACTAN PROTEIN 27	Arabinogalactan protein 27	ARABINOGALACTAN PROTEIN 27		7	LOC_Os07g38630. GO:0035670: plant-type ovary development. TO:0020111: ovary development trait.	 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0573900	LOC_Os07g38630.1				GO:0008585 - female gonad development, GO:0009555 - pollen development, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001007 - pollen development stage , PO:0001083 - inflorescence development stage , PO:0009073 - stigma , PO:0009049 - inflorescence 
11321	AGP28	OsAGP28	ARABINOGALACTAN PROTEIN 28	Arabinogalactan protein 28	ARABINOGALACTAN PROTEIN 28		5	chromosome location: Chr5:26814680, 26815094.									
11322	AGP29	OsAGP29	ARABINOGALACTAN PROTEIN 29	Arabinogalactan protein 29	ARABINOGALACTAN PROTEIN 29		1	LOC_Os01g42210.		Os01g0607100	LOC_Os01g42210.1				GO:0016021 - integral to membrane		
11323	AGP30	OsAGP30	ARABINOGALACTAN PROTEIN 30	Arabinogalactan protein 30	ARABINOGALACTAN PROTEIN 30		2	LOC_Os02g10240. GO:0035670: plant-type ovary development. TO:0020111: ovary development trait.	 Reproductive organ - Inflorescence,  Seed,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0196100	LOC_Os02g10240.1				GO:0048316 - seed development, GO:0008585 - female gonad development, GO:0003676 - nucleic acid binding, GO:0010229 - inflorescence development, GO:0005622 - intracellular, GO:0008270 - zinc ion binding	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009073 - stigma 
11324	AGP31	OsAGP31	ARABINOGALACTAN PROTEIN 31	Arabinogalactan protein 31	ARABINOGALACTAN PROTEIN 31		3	LOC_Os03g63540.		Os03g0852400	LOC_Os03g63540.1				GO:0009556 - microsporogenesis, GO:0009554 - megasporogenesis		PO:0009049 - inflorescence 
11328	_	OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1	_	non-specific lipid transfer protein-like AGP 1, non-specific lipid transfer protein-like arabinogalactan protein 1, GPI-anchored non-specific lipid transfer protein 6, type G nsLTP 6, type G non-specific lipid transfer protein 6, non-specific lipid transfer protein-like protein 1			3	Q6ASY2. EU282465. LOC_Os03g26820.		Os03g0385400	LOC_Os03g26820.1				GO:0006869 - lipid transport, GO:0031225 - anchored to membrane, GO:0008289 - lipid binding, GO:0005773 - vacuole, GO:0006508 - proteolysis, GO:0008233 - peptidase activity, GO:0032578 - aleurone grain membrane		
11329	_	OsLLA2, OsLTPG27, LLA2, LTPG27	_	non-specific lipid transfer protein-like AGP 2, non-specific lipid transfer protein-like arabinogalactan protein 2, GPI-anchored non-specific lipid transfer protein 27, type G nsLTP 27			3	LOC_Os03g46180.		Os03g0664600	LOC_Os03g46180.1				GO:0006869 - lipid transport, GO:0008233 - peptidase activity, GO:0006508 - proteolysis		PO:0009005 - root 
11330	_	OsLLA3, LLA3	_	non-specific lipid transfer protein-like AGP 3, non-specific lipid transfer protein-like arabinogalactan protein 3			4	LOC_Os04g52250. Os04g0612300 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os04g52250				GO:0006869 - lipid transport		
11331	_	OsLLA4, LLA4	_	non-specific lipid transfer protein-like AGP 4, non-specific lipid transfer protein-like arabinogalactan protein 4			6	LOC_Os06g46780. Os06g0681500 (in RAP2 (build4)).			LOC_Os06g46780				GO:0006869 - lipid transport		
11332	_	OsLLA5, LLA5	_	non-specific lipid transfer protein-like AGP 5, non-specific lipid transfer protein-like arabinogalactan protein 5			6	LOC_Os06g46870.		Os06g0682750	LOC_Os06g46870.1				GO:0003723 - RNA binding, GO:0006396 - RNA processing, GO:0006869 - lipid transport		
11333	_	OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14	_	non-specific lipid transfer protein-like AGP 6, non-specific lipid transfer protein-like arabinogalactan protein 6, GPI-anchored non-specific lipid transfer protein 14, type G nsLTP 14, type G non-specific lipid transfer protein 14			7	LOC_Os07g07790.		Os07g0174400	LOC_Os07g07790.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport		
11334	_	OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21	_	non-specific lipid transfer protein-like AGP 7, non-specific lipid transfer protein-like arabinogalactan protein 7, GPI-anchored non-specific lipid transfer protein 21, type G nsLTP 21, type G non-specific lipid transfer protein 21			7	LOC_Os07g43290.		Os07g0625800	LOC_Os07g43290.2, LOC_Os07g43290.1				GO:0006869 - lipid transport, GO:0008289 - lipid binding		PO:0009005 - root 
11335	_	OsLLA8, LLA8	_	non-specific lipid transfer protein-like AGP 8, non-specific lipid transfer protein-like arabinogalactan protein 8			10	LOC_Os10g11370.		Os10g0191100	LOC_Os10g11370.1				GO:0008233 - peptidase activity, GO:0006869 - lipid transport, GO:0006508 - proteolysis		
11336	FLA1	OsFLA1	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1	fasciclin-like AGP 1, fasciclin-like arabinogalactan protein 1	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1		4	LOC_Os04g48490.	 Tolerance and resistance - Stress tolerance	Os04g0574200	LOC_Os04g48490.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
11337	FLA2	OsFLA2	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2	fasciclin-like AGP 2, fasciclin-like arabinogalactan protein 2	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2		3	AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.		Os03g0128000	LOC_Os03g03600.1				GO:0009556 - microsporogenesis, GO:0009554 - megasporogenesis		PO:0008016 - vegetative shoot apical meristem , PO:0009049 - inflorescence 
11338	FLA3	OsFLA3	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3	fasciclin-like AGP 3, fasciclin-like arabinogalactan protein 3	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3		8	LOC_Os08g23180.		Os08g0321000	LOC_Os08g23180.1						
11339	FLA4	OsFLA4	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4	fasciclin-like AGP 4, fasciclin-like arabinogalactan protein 4	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4		8	LOC_Os08g38270.	 Tolerance and resistance - Stress tolerance	Os08g0490600	LOC_Os08g38270.1				GO:0009554 - megasporogenesis, GO:0009556 - microsporogenesis, GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009073 - stigma , PO:0009049 - inflorescence 
11340	FLA5	OsFLA5	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5	fasciclin-like AGP 5, fasciclin-like arabinogalactan protein 5	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5		8	LOC_Os08g39270.	 Tolerance and resistance - Stress tolerance	Os08g0502400	LOC_Os08g39270.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11341	FLA6	OsFLA6	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6	fasciclin-like AGP 6, fasciclin-like arabinogalactan protein 6	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6		5	LOC_Os05g48900.		Os05g0563600	LOC_Os05g48900.1						
11342	FLA7	OsFLA7	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7	fasciclin-like AGP 7, fasciclin-like arabinogalactan protein 7	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7		1	LOC_Os01g47780. GO:0035670: plant-type ovary development. TO:0020111: ovary development trait.	 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0668100	LOC_Os01g47780.1				GO:0010229 - inflorescence development, GO:0008585 - female gonad development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009073 - stigma 
11343	FLA8	OsFLA8	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8	fasciclin-like AGP 8, fasciclin-like arabinogalactan protein 8	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8		1	LOC_Os01g06580.		Os01g0159200	LOC_Os01g06580.1						PO:0009066 - anther , PO:0009049 - inflorescence 
11344	FLA9	OsFLA9	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9	fasciclin-like AGP 9, fasciclin-like arabinogalactan protein 9	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9		5	LOC_Os05g07060.		Os05g0163300	LOC_Os05g07060.1						
11345	FLA10	OsFLA10	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10	fasciclin-like AGP 10, fasciclin-like arabinogalactan protein 10	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10		9	AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.		Os09g0476800	LOC_Os09g30010.1						
11346	FLA11	OsFLA11	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11	fasciclin-like AGP 11, fasciclin-like arabinogalactan protein 11	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11		9	LOC_Os09g07350.		Os09g0248100	LOC_Os09g07350.1				GO:0009554 - megasporogenesis, GO:0046658 - anchored to plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009556 - microsporogenesis	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009073 - stigma , PO:0009049 - inflorescence 
11347	FLA12	OsFLA12	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12	fasciclin-like AGP 12, fasciclin-like arabinogalactan protein 12	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12		1	LOC_Os01g62380.		Os01g0841100	LOC_Os01g62380.2, LOC_Os01g62380.1						
11348	FLA13	OsFLA13	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13	fasciclin-like AGP 13, fasciclin-like arabinogalactan protein 13	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13		4	LOC_Os04g39600.		Os04g0472200	LOC_Os04g39600.1						
11349	FLA14	OsFLA14	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14	fasciclin-like AGP 14, fasciclin-like arabinogalactan protein 14	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14		4	LOC_Os04g39590.		Os04g0472100	LOC_Os04g39590.1				GO:0009555 - pollen development		PO:0001007 - pollen development stage , PO:0009066 - anther , PO:0009049 - inflorescence 
11350	FLA15	OsFLA15	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15	fasciclin-like AGP 15, fasciclin-like arabinogalactan protein 15	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15		2	LOC_Os02g20560.		Os02g0308800	LOC_Os02g20560.1				GO:0009555 - pollen development		PO:0001007 - pollen development stage , PO:0009049 - inflorescence 
11351	FLA16	OsFLA16	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16	fasciclin-like AGP 16, fasciclin-like arabinogalactan protein 16	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16		7	LOC_Os07g06680.		Os07g0160600	LOC_Os07g06680.1				GO:0005773 - vacuole		PO:0009049 - inflorescence , PO:0009066 - anther 
11352	FLA17	OsFLA17	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17	fasciclin-like AGP 17, fasciclin-like arabinogalactan protein 17	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17		3	LOC_Os03g57490.	 Reproductive organ - Inflorescence	Os03g0788700	LOC_Os03g57490.2, LOC_Os03g57490.1				GO:0009556 - microsporogenesis, GO:0010229 - inflorescence development, GO:0005773 - vacuole, GO:0009554 - megasporogenesis	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
11353	FLA18	OsFLA18	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18	fasciclin-like AGP 18, fasciclin-like arabinogalactan protein 18	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18		5	LOC_Os05g48890.	 Tolerance and resistance - Stress tolerance	Os05g0563550	LOC_Os05g48890.1				GO:0009556 - microsporogenesis, GO:0009554 - megasporogenesis, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009073 - stigma , PO:0009049 - inflorescence 
11354	FLA19	OsFLA19	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 19	fasciclin-like AGP 19, fasciclin-like arabinogalactan protein 19	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 19		2	LOC_Os02g20540.	 Tolerance and resistance - Stress tolerance	Os02g0308400	LOC_Os02g20540.2, LOC_Os02g20540.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11355	FLA20	OsFLA20	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20	fasciclin-like AGP 20, fasciclin-like arabinogalactan protein 20	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20		2	LOC_Os02g26320.		Os02g0461500	LOC_Os02g26320.1						
11356	FLA21	OsFLA21	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21	fasciclin-like AGP 21, fasciclin-like arabinogalactan protein 21	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21		2	LOC_Os02g49420.		Os02g0726000	LOC_Os02g49420.1						
11357	FLA22	OsFLA22	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 22	fasciclin-like AGP 22, fasciclin-like arabinogalactan protein 22	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 22		2	LOC_Os02g26290.		Os02g0461000	LOC_Os02g26290.1						PO:0009049 - inflorescence , PO:0009066 - anther 
11358	FLA23	OsFLA23	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 23	fasciclin-like AGP 23, fasciclin-like arabinogalactan protein 23	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 23		6	LOC_Os06g17460.		Os06g0285100	LOC_Os06g17460.1						
11359	FLA24	OsFLA24	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 24	fasciclin-like AGP 24, fasciclin-like arabinogalactan protein 24	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 24		3	LOC_Os03g57460.		Os03g0788600	LOC_Os03g57460.1				GO:0005773 - vacuole, GO:0009556 - microsporogenesis, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009554 - megasporogenesis	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence 
11360	FLA25	OsFLA25	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 25	fasciclin-like AGP 25, fasciclin-like arabinogalactan protein 25	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 25		6	LOC_Os06g44660.		Os06g0656800	LOC_Os06g44660.1				GO:0009555 - pollen development		PO:0001007 - pollen development stage , PO:0009073 - stigma , PO:0009066 - anther , PO:0009049 - inflorescence 
11361	FLA26	OsFLA26	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 26	fasciclin-like AGP 26, fasciclin-like arabinogalactan protein 26	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 26		5	LOC_Os05g38500.		Os05g0459700	LOC_Os05g38500.1						
11362	FLA27	OsFLA27	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 27	fasciclin-like AGP 27, fasciclin-like arabinogalactan protein 27	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 27		9	LOC_Os09g30486.	 Tolerance and resistance - Stress tolerance	Os09g0482780	LOC_Os09g30486.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009066 - anther , PO:0009049 - inflorescence 
11363	_	OsSK1	_	Shikimate kinase 1, Shikimate kinase			2	AB188834. Q5NTH4. AU175176, AU176556.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0749300	LOC_Os02g51410.3, LOC_Os02g51410.2, LOC_Os02g51410.1				GO:0009073 - aromatic amino acid family biosynthetic process, GO:0005524 - ATP binding, GO:0004765 - shikimate kinase activity, GO:0019632 - shikimate metabolic process, GO:0009411 - response to UV, GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0009423 - chorismate biosynthetic process	TO:0000160 - UV light sensitivity, TO:0000432 - temperature response trait	
11364	_	OsSK2, SK2	_	Shikimate kinase 2			6	AB188835. Q5NTH3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0225800	LOC_Os06g12150.2, LOC_Os06g12150.1				GO:0004765 - shikimate kinase activity, GO:0009411 - response to UV, GO:0019632 - shikimate metabolic process, GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0009423 - chorismate biosynthetic process, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0005524 - ATP binding	TO:0000160 - UV light sensitivity	
11365	_	OsSK3, SK3	_	Shikimate kinase 3			4	AB188836. Q7X7H9. LOC_Os04g54800. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character	Os04g0640600	LOC_Os04g54800.3, LOC_Os04g54800.2, LOC_Os04g54800.1				GO:0005524 - ATP binding, GO:0009423 - chorismate biosynthetic process, GO:0009507 - chloroplast, GO:0019632 - shikimate metabolic process, GO:0046872 - metal ion binding, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0004765 - shikimate kinase activity, GO:0009610 - response to symbiotic fungus		PO:0025025 - root system 
11366	_	OsSK4, OsSKL1	_	Shikimate kinase 4			1		 Biochemical character	Os01g0102600	LOC_Os01g01302.1				GO:0005524 - ATP binding, GO:0004765 - shikimate kinase activity		
11367	_	OsSWIB	_	SWIB complex BAF60b domain-containing protein			4			Os04g0382100	LOC_Os04g31320.1				GO:0048364 - root development		
11368	_	OsSWI3C, OsCHB705, CHB705	_	SWIRM domain-containing protein OsSWI3C			11			Os11g0183700	LOC_Os11g08080.2, LOC_Os11g08080.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0003682 - chromatin binding		
11369	_	OsLti6a, Lti6a, OsLTI6A, OsRCI2-10	_	low temperature-induced low molecular weight integral membrane protein LTI6a, low temperature induced gene 6a, rare cold-inducible 2-10			7	AY607689. Q8H5T6. LOC_Os07g44180. RCI2 (rare cold-inducible 2) family gene. 	 Tolerance and resistance - Stress tolerance	Os07g0635900	LOC_Os07g44180.1	GR:0101182			GO:0009414 - response to water deprivation, GO:0055075 - potassium ion homeostasis, GO:0055078 - sodium ion homeostasis, GO:0042538 - hyperosmotic salinity response, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0009409 - response to cold		
11370	_	OsLti6b, Lti6b, OsLTI6B, OsRCI2-6	_	low temperature-induced low molecular weight integral membrane protein LTI6b, low temperature induced gene 6b, low temperature and salt responsive protein LTI6B, rare cold-inducible 2-6			5	AY607690. Q0DKW8. EB687546. D40768, AU174271. LOC_Os05g04700. RCI2 (rare cold-inducible 2) family gene. 	 Tolerance and resistance - Stress tolerance	Os05g0138300	LOC_Os05g04700.1				GO:0016021 - integral to membrane, GO:0055078 - sodium ion homeostasis, GO:0055075 - potassium ion homeostasis, GO:0042538 - hyperosmotic salinity response	TO:0000432 - temperature response trait	
11371	_	OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116	_	inducer of CBF expression 1, basic helix-loop-helix protein 010, OsMYC2-like protein 1, MYC2-like protein 1			1	bHLH116 in Katsuragi et al. 2015.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os01g0705700 	LOC_Os01g50940.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0002237 - response to molecule of bacterial origin	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000236 - crop damage resistance	
11372	PAP1A	OsPAP1a, NPP3, OsNPP3	PURPLE ACID PHOSPHATASE 1A	purple acid phosphatase 1a, Nucleotide pyrophosphatase/phosphodiesterase 3	PURPLE ACID PHOSPHATASE 1A		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0214000	LOC_Os03g11530.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11373	PAP1B	OsPAP1b, NPP2, OsNPP2	PURPLE ACID PHOSPHATASE 1B	purple acid phosphatase 1b, Nucleotide pyrophosphatase/phosphodiesterase 2	PURPLE ACID PHOSPHATASE 1B		12	AB196673.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0576750	LOC_Os12g38770.1				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11374	PAP1C	OsPAP1c, NPP4, OsNPP4	PURPLE ACID PHOSPHATASE 1C	purple acid phosphatase 1c, Nucleotide pyrophosphatase/phosphodiesterase 4	PURPLE ACID PHOSPHATASE 1C		12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0576700	LOC_Os12g38760.2, LOC_Os12g38760.1				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11375	PAP1D	OsPAP1d, NPP5, OsNPP5	PURPLE ACID PHOSPHATASE 1D	purple acid phosphatase 1d, Nucleotide pyrophosphatase/phosphodiesterase 5	PURPLE ACID PHOSPHATASE 1D		12	LOC_Os12g38750.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0576600	LOC_Os12g38750.2, LOC_Os12g38750.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	
11376	PAP3A	OsPAP3a	PURPLE ACID PHOSPHATASE 3A	purple acid phosphatase 3a	PURPLE ACID PHOSPHATASE 3A		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0549615	LOC_Os11g34710.1				GO:0003993 - acid phosphatase activity, GO:0030643 - cellular phosphate ion homeostasis, GO:0016311 - dephosphorylation, GO:0042542 - response to hydrogen peroxide, GO:0005773 - vacuole		
11377	PAP3B	OsPAP3b	PURPLE ACID PHOSPHATASE 3B	purple acid phosphatase 3b	PURPLE ACID PHOSPHATASE 3B		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0116800	LOC_Os10g02750.1				GO:0016036 - cellular response to phosphate starvation, GO:0005773 - vacuole, GO:0003993 - acid phosphatase activity, GO:0016311 - dephosphorylation, GO:0030643 - cellular phosphate ion homeostasis, GO:0042542 - response to hydrogen peroxide		
11378	PAP3C	OsPAP3c	PURPLE ACID PHOSPHATASE 3C	purple acid phosphatase 3c	PURPLE ACID PHOSPHATASE 3C		3	LOC_Os03g13540.	 Biochemical character,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os03g0238600	LOC_Os03g13540.1				GO:0016311 - dephosphorylation, GO:0006817 - phosphate transport, GO:0016036 - cellular response to phosphate starvation, GO:0042542 - response to hydrogen peroxide, GO:0030643 - cellular phosphate ion homeostasis, GO:0005773 - vacuole, GO:0003993 - acid phosphatase activity	TO:0000102 - phosphorus sensitivity, TO:0002661 - seed maturation	
11379	PAP7	OsPAP7	PURPLE ACID PHOSPHATASE 7	purple acid phosphatase 7	PURPLE ACID PHOSPHATASE 7		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0549620	LOC_Os11g34720.1				GO:0030643 - cellular phosphate ion homeostasis, GO:0042542 - response to hydrogen peroxide, GO:0003993 - acid phosphatase activity, GO:0005773 - vacuole, GO:0016311 - dephosphorylation		
11380	PAP9A	OsPAP9a	PURPLE ACID PHOSPHATASE 9A	purple acid phosphatase 9a	PURPLE ACID PHOSPHATASE 9A		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0111600	LOC_Os07g02090.1				GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0003993 - acid phosphatase activity		
11381	PAP9B	OsPAP9b	PURPLE ACID PHOSPHATASE 9B	purple acid phosphatase 9b	PURPLE ACID PHOSPHATASE 9B		1		 Biochemical character,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os01g0800500	LOC_Os01g58640.1				GO:0003993 - acid phosphatase activity, GO:0006817 - phosphate transport, GO:0016036 - cellular response to phosphate starvation, GO:0046872 - metal ion binding	TO:0002661 - seed maturation, TO:0000102 - phosphorus sensitivity	
11382	PAP10A	OsPAP10a, PAP10	PURPLE ACID PHOSPHATASE 10A	purple acid phosphatase 10a	PURPLE ACID PHOSPHATASE 10A		1	LOC_Os01g56880. a phosphatase implicated in Pi recycling. PAP10 in Zhao et al. 2016.	 Biochemical character,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os01g0776600	LOC_Os01g56880.2, LOC_Os01g56880.1				GO:0009505 - plant-type cell wall, GO:0046872 - metal ion binding, GO:0016036 - cellular response to phosphate starvation, GO:0006817 - phosphate transport, GO:0003993 - acid phosphatase activity	TO:0002661 - seed maturation, TO:0000102 - phosphorus sensitivity	
11383	PAP10B	OsPAP10b	PURPLE ACID PHOSPHATASE 10B	purple acid phosphatase 10b	PURPLE ACID PHOSPHATASE 10B		12	Digital expression data showed that the expression of OsPAP10b and OsPAP10d is very low, suggesting that these two genes may be pseudogenes. (Lu et al. 2016)	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0637000	LOC_Os12g44010.1				GO:0016036 - cellular response to phosphate starvation, GO:0009505 - plant-type cell wall, GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11384	PAP10C	OsPAP10c	PURPLE ACID PHOSPHATASE 10C	purple acid phosphatase 10c	PURPLE ACID PHOSPHATASE 10C		12	TO:0020102: phosphate content.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os12g0637100	LOC_Os12g44020.2, LOC_Os12g44020.1				GO:0009505 - plant-type cell wall, GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity, GO:0016036 - cellular response to phosphate starvation	TO:0000346 - tiller number, TO:0000207 - plant height	PO:0006036 - root epidermis 
11385	PAP10D	OsPAP10d	PURPLE ACID PHOSPHATASE 10D	purple acid phosphatase 10d	PURPLE ACID PHOSPHATASE 10D		12	Digital expression data showed that the expression of OsPAP10b and OsPAP10d is very low, suggesting that these two genes may be pseudogenes. (Lu et al. 2016) LOC_Os12g44030, LOC_Os12g44040 and LOC_Os12g44050 are mis-annotated as three ORFs. LOC_Os12g44030 and LOC_Os12g44050 encode the N-terminal and C-terminal regions of the OsPAP10d protein, which is disrupted by the putative transposon gene LOC_Os12g44040. (Lu et al. 2016) 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0637200	LOC_Os12g44030.1				GO:0009505 - plant-type cell wall, GO:0016036 - cellular response to phosphate starvation, GO:0016787 - hydrolase activity		
11386	PAP15	OsPAP15, OsPAPhy_b, PAPhy_b, OsPHY1	PURPLE ACID PHOSPHATASE 15	purple acid phosphatase 15, purple acid phosphatase phytase b, phytase 1	PURPLE ACID PHOSPHATASE 15		3	HM006823, ADG07931. HQ337903.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0848200	LOC_Os03g63074.2, LOC_Os03g63074.1				GO:0009846 - pollen germination, GO:0003824 - catalytic activity, GO:0009845 - seed germination, GO:0003993 - acid phosphatase activity, GO:0008152 - metabolic process, GO:0046872 - metal ion binding, GO:0008707 - 4-phytase activity, GO:0030170 - pyridoxal phosphate binding		
11387	PAP18	OsPAP18	PURPLE ACID PHOSPHATASE 18	purple acid phosphatase 18	PURPLE ACID PHOSPHATASE 18		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0568900	LOC_Os03g37130.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11388	PAP20A	OsPAP20a	PURPLE ACID PHOSPHATASE 20A	purple acid phosphatase 20a	PURPLE ACID PHOSPHATASE 20A		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0151800	LOC_Os11g05410.2, LOC_Os11g05410.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11389	PAP20B	OsPAP20b	PURPLE ACID PHOSPHATASE 20B	purple acid phosphatase 20b	PURPLE ACID PHOSPHATASE 20B		12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0151000	LOC_Os12g05540.1				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11390	PAP21A	OsPAP21a	PURPLE ACID PHOSPHATASE 21A	purple acid phosphatase 21a	PURPLE ACID PHOSPHATASE 21A		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0410600	LOC_Os04g33530.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11391	PAP21B	OsPAP21b	PURPLE ACID PHOSPHATASE 21B	purple acid phosphatase 21b	PURPLE ACID PHOSPHATASE 21B		11	TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0151700	LOC_Os11g05400.1				GO:0006796 - phosphate metabolic process, GO:0046872 - metal ion binding, GO:0016036 - cellular response to phosphate starvation, GO:0003993 - acid phosphatase activity	TO:0000227 - root length, TO:0000457 - total biomass yield, TO:0001019 - root to total biomass ratio	
11392	PAP21C	OsPAP21c	PURPLE ACID PHOSPHATASE 21C	purple acid phosphatase 21c	PURPLE ACID PHOSPHATASE 21C		12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0150700	LOC_Os12g05510.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11393	PAP23	OsPAP23	PURPLE ACID PHOSPHATASE 23	purple acid phosphatase 23	PURPLE ACID PHOSPHATASE 23		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0280100	LOC_Os08g17784.2, LOC_Os08g17784.1				GO:0016036 - cellular response to phosphate starvation, GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11394	PAP26	OsPAP26	PURPLE ACID PHOSPHATASE 26	purple acid phosphatase 26	PURPLE ACID PHOSPHATASE 26		6	TO:0020102: phosphate content.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os06g0643900	LOC_Os06g43640.1, LOC_Os06g43640.2				GO:0042594 - response to starvation, GO:0006817 - phosphate transport, GO:0009505 - plant-type cell wall, GO:0010150 - leaf senescence, GO:0003993 - acid phosphatase activity, GO:0055062 - phosphate ion homeostasis, GO:0046872 - metal ion binding, GO:0005773 - vacuole	TO:0000249 - leaf senescence, TO:0002661 - seed maturation	PO:0001054 - 4 leaf senescence stage 
11395	PAP27A	OsPAP27a, NPP6, OsNPP6	PURPLE ACID PHOSPHATASE 27A	purple acid phosphatase 27a, Nucleotide pyrophosphatase/phosphodiesterase 6	PURPLE ACID PHOSPHATASE 27A		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0506000	LOC_Os09g32840.1				GO:0005618 - cell wall, GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity, GO:0016036 - cellular response to phosphate starvation		
11396	PAP27C	OsPAP27c	PURPLE ACID PHOSPHATASE 27C	purple acid phosphatase 27c	PURPLE ACID PHOSPHATASE 27C		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0505900	LOC_Os09g32830.1						
11397	PHGPX	OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX	PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE	glutathione peroxidase 2, phospholipid hydroperoxide glutathione peroxidase			3	AJ270955.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0358100	LOC_Os03g24380.1				GO:0005886 - plasma membrane, GO:0009793 - embryonic development ending in seed dormancy, GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus, GO:0004602 - glutathione peroxidase activity	TO:0000074 - blast disease	
11398	GPX3	OsGpx3, GPX3, OsGPx03	GLUTATHIONE PEROXIDASE 3	glutathione peroxidase 3	GLUTATHIONE PEROXIDASE 3		2		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0664000	LOC_Os02g44500.1				GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0004602 - glutathione peroxidase activity, GO:0009507 - chloroplast, GO:0009651 - response to salt stress	TO:0000074 - blast disease	
11399	GPX4	OsGpx4, GPX4, OsGPx04, OsGPX4	GLUTATHIONE PEROXIDASE 4	glutathione peroxidase 4	GLUTATHIONE PEROXIDASE 4		6	GO:0080167:response to karrikin. LOC_Os06g08670.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0185900	LOC_Os06g08670.1				GO:0009570 - chloroplast stroma, GO:0045454 - cell redox homeostasis, GO:0006979 - response to oxidative stress, GO:0031099 - regeneration, GO:0004602 - glutathione peroxidase activity, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane		
11400	GPX5	OsGpx5, GPX5, OsGPx05	GLUTATHIONE PEROXIDASE 5	glutathione peroxidase 5	GLUTATHIONE PEROXIDASE 5		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0284900	LOC_Os11g18170.1				GO:0006979 - response to oxidative stress, GO:0004602 - glutathione peroxidase activity		
11401	_	OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS	_	S-Adenosyl-l-methionine synthetase 1, S-adenosyl methionine synthetase, S-adenosylmethionine synthetase 1, SAM synthase		Ossams1	5	Z26867. A2Y053. Q0DKY4. D24100, AU174654, AU065347. AM177232-AM177311 (exon 1: O. sativa, O. rufipogon, O. officinalis)	 Biochemical character,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Character as QTL - Germination	Os05g0135700	LOC_Os05g04510.2, LOC_Os05g04510.1				GO:0009873 - ethylene mediated signaling pathway, GO:0006556 - S-adenosylmethionine biosynthetic process, GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0006730 - one-carbon metabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0015948 - methanogenesis, GO:0009809 - lignin biosynthetic process, GO:0006555 - methionine metabolic process, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0005524 - ATP binding, GO:0004478 - methionine adenosyltransferase activity, GO:0046872 - metal ion binding, GO:0051607 - defense response to virus	TO:0000391 - seed size, TO:0000148 - viral disease resistance, TO:0000249 - leaf senescence, TO:0000172 - jasmonic acid sensitivity, TO:0000476 - growth hormone content, TO:0002759 - grain number, TO:0002661 - seed maturation, TO:0000590 - grain weight	
11402	_	OsSAMS3, OsSAMS1, SAMS3, SAMS1	_	S-Adenosyl-l-methionine synthetase 3			1	Q9LGU6. CI069897. OsSAMS1 in Ishimaru et al. 2010.	 Biochemical character,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os01g0293000	LOC_Os01g18860.2, LOC_Os01g18860.1				GO:0006555 - methionine metabolic process, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0004478 - methionine adenosyltransferase activity, GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0015948 - methanogenesis, GO:0009809 - lignin biosynthetic process, GO:0009409 - response to cold, GO:0006730 - one-carbon metabolic process, GO:0006556 - S-adenosylmethionine biosynthetic process	TO:0000021 - copper sensitivity	
11403	PAO1	OsPAO1, OsAO4, AO4	POLYAMINE OXIDASE 1	Polyamine oxidase 1, Amine oxidase 4	POLYAMINE OXIDASE 1		1	LOC_Os01g51320. FAD-containing polyamide oxidase. GO: 1990534: thermospermine oxidase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0710200	LOC_Os01g51320.1				GO:0006598 - polyamine catabolic process, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0005737 - cytoplasm, GO:0016491 - oxidoreductase activity		
11404	PAO3	OsPAO3, OsAO3, AO3	POLYAMINE OXIDASE 3	Polyamine oxidase 3, Amine oxidase 3	POLYAMINE OXIDASE 3		4	LOC_Os04g53190/LOC_Os04g53195. LOC_Os04g53190 in Saha and Giri 2017. FAD-containing polyamide oxidase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0623300	LOC_Os04g53195.1, LOC_Os04g53190.2, LOC_Os04g53190.1				GO:0005777 - peroxisome, GO:0000166 - nucleotide binding, GO:0006598 - polyamine catabolic process, GO:0009651 - response to salt stress, GO:0016491 - oxidoreductase activity	TO:0006001 - salt tolerance	
11405	PAO4	OsPAO4, OsAO1, AO1	POLYAMINE OXIDASE 4	Polyamine oxidase 4, Amine oxidase 1	POLYAMINE OXIDASE 4		4	LOC_Os04g57550. FAD-containing polyamide oxidase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0671200	LOC_Os04g57550.1				GO:0016491 - oxidoreductase activity, GO:0009651 - response to salt stress, GO:0046592 - polyamine oxidase activity, GO:0006598 - polyamine catabolic process, GO:0005777 - peroxisome, GO:0000166 - nucleotide binding	TO:0006001 - salt tolerance	
11406	PAO5	OsPAO5, OsAO2, AO2	POLYAMINE OXIDASE 5	Polyamine oxidase 5, Amine oxidase 2	POLYAMINE OXIDASE 5		4	LOC_Os04g57560. FAD-containing polyamide oxidase.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os04g0671300	LOC_Os04g57560.1				GO:0009651 - response to salt stress, GO:0046592 - polyamine oxidase activity, GO:0000166 - nucleotide binding, GO:0006598 - polyamine catabolic process, GO:0009415 - response to water, GO:0005777 - peroxisome, GO:0009845 - seed germination, GO:0050665 - hydrogen peroxide biosynthetic process	TO:0010001 - percent germination, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance	PO:0009009 - plant embryo , PO:0007057 - 0 seed germination stage 
11407	PAO7	OsPAO7, OsPAO3, PAO3	POLYAMINE OXIDASE 7	Polyamine oxidase 7	POLYAMINE OXIDASE 7		9	LOC_Os09g20284. FAD-containing polyamide oxidase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0368500	LOC_Os09g20284.1				GO:0046592 - polyamine oxidase activity, GO:0016491 - oxidoreductase activity, GO:0006598 - polyamine catabolic process, GO:0050660 - FAD binding, GO:0009651 - response to salt stress, GO:0005576 - extracellular region	TO:0006001 - salt tolerance	
11408	GF14C	GF14c, OsGF14c, 14-3-3c	G-BOX FACTOR 14-3-3C PROTEIN	G-box factor 14-3-3c protein		gf14c	8	LOC_Os08g33370. Q6ZKC0. AAB07457. D22692.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os08g0430500	LOC_Os08g33370.2, LOC_Os08g33370.1				GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0005635 - nuclear envelope, GO:0005739 - mitochondrion, GO:0005886 - plasma membrane, GO:0009570 - chloroplast stroma, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:2000028 - regulation of photoperiodism, flowering	TO:0000276 - drought tolerance, TO:0002616 - flowering time, TO:0000137 - days to heading	
11409	GF14B	GF14b, OsGF14b, 14-3-3b	G-BOX FACTOR 14-3-3B PROTEIN	G-box factor 14-3-3b protein			4	LOC_Os04g38870. Q7XTE8. AAB07456. D15663.	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0462500	LOC_Os04g38870.5, LOC_Os04g38870.4, LOC_Os04g38870.3, LOC_Os04g38870.2, LOC_Os04g38870.1				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0005635 - nuclear envelope, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
11410	GF14A	GF14a, OsGF14a, WIN2, 14-3-3a	G-BOX FACTOR 14-3-3A PROTEIN	G-box factor 14-3-3a protein, wound-inducible WIN2			8	LOC_Os08g37490. Q84J55. AAO72553. AY224524.	 Reproductive organ - Heading date	Os08g0480800	LOC_Os08g37490.1				GO:0009505 - plant-type cell wall, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0009742 - brassinosteroid mediated signaling, GO:0042742 - defense response to bacterium, GO:0046686 - response to cadmium ion		
11411	GF14D	GF14d, OsGF14d, Os14-3-3, 14-3-3d	G-BOX FACTOR 14-3-3D PROTEIN	G-box factor 14-3-3d protein			11	LOC_Os11g34450. Q2R2W2. AAB07458.	 Reproductive organ - Heading date	Os11g0546900	LOC_Os11g34450.1				GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0009570 - chloroplast stroma, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0005635 - nuclear envelope, GO:0005618 - cell wall		
11412	GF14F	GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f	G-BOX FACTOR 14-3-3F PROTEIN	G-box factor 14-3-3f protein, ras-related small GTP-binding protein ric1			3	LOC_Os03g50290. Q06967. D16140. D10436. D23181.	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0710800	LOC_Os03g50290.3, LOC_Os03g50290.2, LOC_Os03g50290.1				GO:0005739 - mitochondrion, GO:0005886 - plasma membrane, GO:0000077 - DNA damage checkpoint, GO:0005618 - cell wall, GO:0004623 - phospholipase A2 activity, GO:0009651 - response to salt stress, GO:0006588 - activation of tryptophan 5-monooxygenase activity, GO:0009414 - response to water deprivation, GO:0008426 - protein kinase C inhibitor activity, GO:0009570 - chloroplast stroma, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005635 - nuclear envelope, GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
11413	GF14G	GF14g, OsGF14g, 14-3-3g	G-BOX FACTOR 14-3-3G PROTEIN	G-box factor 14-3-3g protein			1	LOC_Os01g11110. Q5QNB8. BAD73105.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os01g0209200	LOC_Os01g11110.2				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
11414	GF14H	GF14h, OsGF14h, 14-3-3h	G-BOX FACTOR 14-3-3H PROTEIN	G-box factor 14-3-3h protein			11	LOC_Os11g39540. Q2R1D5. ABA94733.	 Reproductive organ - Heading date	Os11g0609600	LOC_Os11g39540.1						
11415	_	OsKANADI1, OsKANADI2, KANADI1, KANADI2	_				2	a rice homologue of Arabidopsis KANADI. OsKANADI2 in Liu et al. 2018.	 Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os02g0696900	LOC_Os02g46940.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
11416	_	OsBIP116b	_				7	a rice homologue of Arabidopsis WAVEDAMPENED2.	 Reproductive organ - Heading date	Os07g0185432	LOC_Os07g08790.1						
11417	_	OsPK1, PK1	_	pyruvate kinase 1		ospk1	11	LOC_Os11g05110. A novel rice dwarf mutant ospk1, showing dwarfism, panicle enclosure, reduced seed set, and outgrowth of axillary buds from culm nodes, was identified. D16086.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os11g0148500	LOC_Os11g05110.3, LOC_Os11g05110.2, LOC_Os11g05110.1				GO:0009635 - response to herbicide, GO:0000287 - magnesium ion binding, GO:0046686 - response to cadmium ion, GO:0030955 - potassium ion binding, GO:0004743 - pyruvate kinase activity, GO:0006096 - glycolysis, GO:0005886 - plasma membrane	TO:0000058 - herbicide sensitivity	
11418	_	PEPCK, OsPEPCK	_	PEP carboxykinase, Phosphoenolpyruvate carboxykinase			10	LOC_Os10g13700.	 Biochemical character	Os10g0204400	LOC_Os10g13700.2				GO:0005524 - ATP binding, GO:0016036 - cellular response to phosphate starvation, GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity, GO:0009817 - defense response to fungus, incompatible interaction, GO:0006094 - gluconeogenesis, GO:0046686 - response to cadmium ion, GO:0016301 - kinase activity, GO:0005829 - cytosol, GO:0016020 - membrane, GO:0005730 - nucleolus		
11419	_	PEPC-1, Osppc1, ppc1	_	PEP carboxylase 1, Phosphoenolpyruvate carboxylase 1, PEPCase 1			2	LOC_Os02g14770. TO:0020093: nitrogen content. the root-type isozyme. a plant-type Phosphoenolpyruvate Carboxylase. AF271995.	 Biochemical character,  Seed,  Seed - Physiological traits - Storage substances	Os02g0244700	LOC_Os02g14770.4, LOC_Os02g14770.3, LOC_Os02g14770.2, LOC_Os02g14770.1				GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0048316 - seed development, GO:0008652 - cellular amino acid biosynthetic process, GO:0006807 - nitrogen compound metabolic process, GO:0006099 - tricarboxylic acid cycle, GO:0015977 - carbon utilization by fixation of carbon dioxide	TO:0002653 - endosperm storage protein content, TO:0000653 - seed development trait	PO:0004506 - developing seed stage 
11420	_	PEPC-2, Osppc4, ppc4	_	PEP carboxylase 2, Phosphoenolpyruvate carboxylase 2, phosphoenolpyruvate carboxylase 4, PEPCase 4			1	LOC_Os01g11054. PEPC-2 in Zhang et al. 2012. a chloroplastic isozyme. a plant-type Phosphoenolpyruvate Carboxylase.	 Biochemical character	Os01g0208700	LOC_Os01g11054.4, LOC_Os01g11054.3, LOC_Os01g11054.2, LOC_Os01g11054.1				GO:0009507 - chloroplast, GO:0006099 - tricarboxylic acid cycle, GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide		
11422	_	ALT-2	_	Alanine transaminase 2			7		 Biochemical character	Os07g0108300	LOC_Os07g01760.1				GO:0047958 - glycine:2-oxoglutarate aminotransferase activity, GO:0009570 - chloroplast stroma, GO:0048046 - apoplast, GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity, GO:0016020 - membrane, GO:0009853 - photorespiration, GO:0030170 - pyridoxal phosphate binding, GO:0005773 - vacuole, GO:0005777 - peroxisome, GO:0008453 - alanine-glyoxylate transaminase activity		
11423	_	OsPuraplha	_	purine-rich DNA-binding protein alpha			1	GI:218187924.							GO:0005737 - cytoplasm, GO:0046686 - response to cadmium ion		
11424	MTP1	OsMTP1	METAL TOLERANCE PROTEIN 1	metal tolerance protein 1	METAL TOLERANCE PROTEIN 1		5	LOC_Os05g03780. Q688R1. Cation Diffusion Facilitator (CDF) family.	 Tolerance and resistance - Stress tolerance	Os05g0128400	LOC_Os05g03780.1				GO:0010312 - detoxification of zinc ion, GO:0046873 - metal ion transmembrane transporter activity, GO:0010299 - detoxification of cobalt ion, GO:0048316 - seed development, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0006829 - zinc ion transport, GO:0009705 - plant-type vacuole membrane, GO:0046686 - response to cadmium ion		PO:0001170 - seed development stage 
11425	CDC16	OsCDC16	CELL DIVISION CONTROL 16	cell division cycle protein 16					 Biochemical character								
11427	CAL1	OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1	CADMIUM ACCUMULATION IN LEAF 1 	Cp-thionin 1, defensing-like 7, Pathogenesis related gene 12, cadmium accumulation in leaf 1, Cd accumulation in leaf 1			2	LOC_Os02g41904. Q6K209. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os02g0629800	LOC_Os02g41904.1				GO:0055073 - cadmium ion homeostasis, GO:0005615 - extracellular space, GO:0009845 - seed germination, GO:0005886 - plasma membrane, GO:0051047 - positive regulation of secretion, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response, GO:0046870 - cadmium ion binding, GO:0050832 - defense response to fungus, GO:0009505 - plant-type cell wall	TO:0000172 - jasmonic acid sensitivity	PO:0005352 - xylem , PO:0007616 - flowering stage , PO:0007057 - 0 seed germination stage , PO:0005772 - exodermis , PO:0000074 - parenchyma cell 
11428	SUI1	OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1	SHORTENED UPPERMOST INTERNODE 1	Shortened Uppermost Internode 1, Phosphatidylserine Synthase 1	PHOSPHATIDYLSERINE SYNTHASE 1	sui1-1, sui1-2, sui1, sui1-4	1	LOC_Os01g02890. GU564663. Q0JR55. TO:0000755: shoot internode anatomy and morphology trait.	 Biochemical character,  Vegetative organ - Culm	Os01g0118300	LOC_Os01g02890.1				GO:0048831 - regulation of shoot development, GO:0006892 - post-Golgi vesicle-mediated transport, GO:0017157 - regulation of exocytosis, GO:0006659 - phosphatidylserine biosynthetic process, GO:0016021 - integral to membrane, GO:0006646 - phosphatidylethanolamine biosynthetic process, GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity, GO:0005789 - endoplasmic reticulum membrane, GO:0019827 - stem cell maintenance, GO:0080006 - internode patterning, GO:0006644 - phospholipid metabolic process, GO:0001558 - regulation of cell growth	TO:0000420 - fertility related trait, TO:0000040 - panicle length, TO:0000300 - glucose content, TO:0000346 - tiller number, TO:0002641 - acid detergent fiber, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000397 - grain size	PO:0005005 - shoot internode , PO:0007089 - stem elongation stage 
11429	PR4B	OsPR4b, OsPR-4b	PATHOGENESIS-RELATED GENE 4B	pathogenesis-related protein 4b, PR protein 4b	PATHOGENESIS-RELATED PROTEIN 4B		11	PR4/barwin homolog.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0592100	LOC_Os11g37960.1				GO:0009817 - defense response to fungus, incompatible interaction, GO:0009615 - response to virus, GO:0042742 - defense response to bacterium, GO:0080027 - response to herbivore, GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress, GO:0009627 - systemic acquired resistance		
11430	PR4C	OsPR4c	PATHOGENESIS-RELATED GENE 4C	pathogenesis-related protein 4c, PR protein 4c	PATHOGENESIS-RELATED PROTEIN 4C		11	LOC_Os11g37950.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0592000	LOC_Os11g37950.1				GO:0009615 - response to virus, GO:0009627 - systemic acquired resistance, GO:0009817 - defense response to fungus, incompatible interaction, GO:0042742 - defense response to bacterium, GO:0080027 - response to herbivore, GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress		
11431	PR4D	OsPR4d	PATHOGENESIS-RELATED GENE 4D	pathogenesis-related protein 4d, PR protein 4d	PATHOGENESIS-RELATED PROTEIN 4D		11		 Tolerance and resistance - Stress tolerance	Os11g0591800	LOC_Os11g37940.1				GO:0009651 - response to salt stress, GO:0080027 - response to herbivore, GO:0042742 - defense response to bacterium, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009723 - response to ethylene stimulus, GO:0009627 - systemic acquired resistance, GO:0009615 - response to virus		
11432	PR4E	OsPR4e	PATHOGENESIS-RELATED GENE 4E	pathogenesis-related protein 4e, PR protein 4e	PATHOGENESIS-RELATED PROTEIN 4E		11	LOC Os11g37930.							GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium		
11433	_	OsGAP1, GAP1	_	GTPase-activating protein 1			2	AU101977.	 Tolerance and resistance - Stress tolerance	Os02g0709800 	LOC_Os02g48000.3, LOC_Os02g48000.2, LOC_Os02g48000.1				GO:0005622 - intracellular, GO:0032851 - positive regulation of Rab GTPase activity, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0005097 - Rab GTPase activator activity	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	
11434	_	OsGDI3	_	GDP dissociation inhibitor 3, GDP dissociation inhibitor3, GDP dissociation inhibitor protein OsGDI3			3	AU094095.		Os03g0277000 	LOC_Os03g16900.1				GO:0005093 - Rab GDP-dissociation inhibitor activity, GO:0015031 - protein transport		
11435	_	OsGDI1, GDI1	_	GDP dissociation inhibitor 1, GDP dissociation inhibitor1, GDP dissociation inhibitor protein OsGDI1, GDP-dissociation inhibitor 1			5	AF016896.	 Tolerance and resistance - Disease resistance	Os05g0418000	LOC_Os05g34540.1				GO:0015031 - protein transport, GO:0048227 - plasma membrane to endosome transport, GO:0005093 - Rab GDP-dissociation inhibitor activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
11436	_	OsGDI2	_	GDP dissociation inhibitor 2, GDP dissociation inhibitor2, GDP dissociation inhibitor protein OsGDI2, GDP-dissociation inhibitor 2			5	AF016897.		Os05g0304400	LOC_Os05g23860.1				GO:0005093 - Rab GDP-dissociation inhibitor activity, GO:0015031 - protein transport, GO:0048227 - plasma membrane to endosome transport		
11437	DSM3	OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1	DROUGHT- AND SALT-SENSITIVE MUTANT 3	inositol 1, 3, 4-trisphosphate 5/6-kinase 2, drought- and salt-sensitive mutant 3	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 2	dsm3	3	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. AY323825.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0230500	LOC_Os03g12840.3, LOC_Os03g12840.2, LOC_Os03g12840.1				GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0000287 - magnesium ion binding, GO:0032957 - inositol trisphosphate metabolic process		
11438	ITPK1	OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 1	inositol 1, 3, 4-trisphosphate 5/6-kinase 1	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 1		10	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. AAK00417. LOC_Os10g01480.	 Biochemical character	Os10g0103800	LOC_Os10g01480.1				GO:0009737 - response to abscisic acid stimulus, GO:0032958 - inositol phosphate biosynthetic process, GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0032957 - inositol trisphosphate metabolic process, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0000287 - magnesium ion binding, GO:0005634 - nucleus, GO:0005524 - ATP binding	TO:0000615 - abscisic acid sensitivity	
11439	ITPK3	OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 3	inositol 1, 3, 4-trisphosphate 5/6-kinase 3, inositol polyphosphate kinase 1	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 3		3	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. OsIPK1 in Zhao et al. 2013. LOC_Os03g51610.	 Biochemical character	Os03g0726200	LOC_Os03g51610.1				GO:0032958 - inositol phosphate biosynthetic process, GO:0032957 - inositol trisphosphate metabolic process, GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0000287 - magnesium ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0009611 - response to wounding	TO:0000615 - abscisic acid sensitivity	
11440	ITPK4	OsITPK4, OsITP5/6K-4, ITP5/6K-4	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 4	inositol 1, 3, 4-trisphosphate 5/6-kinase 4	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 4		2	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. LOC_Os02g26720.	 Biochemical character	Os02g0466400	LOC_Os02g26720.1				GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0032957 - inositol trisphosphate metabolic process, GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding, GO:0005622 - intracellular, GO:0032958 - inositol phosphate biosynthetic process, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
11441	ITPK5	OsITPK5, OsITP5/6K-5, OsITL3	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 5	inositol 1, 3, 4-trisphosphate 5/6-kinase 5	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 5		10	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. AAL67584.	 Biochemical character	Os10g0576100	LOC_Os10g42550.1				GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding, GO:0005622 - intracellular, GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0032957 - inositol trisphosphate metabolic process		
11442	ITPK6	OsITPK6, OsITP5/6K-6, ITP5/6K-6	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 6	inositol 1, 3, 4-trisphosphate 5/6-kinase 6	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 6		9	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. LOC_Os09g34300.	 Biochemical character	Os09g0518700	LOC_Os09g34300.1				GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0009737 - response to abscisic acid stimulus, GO:0032957 - inositol trisphosphate metabolic process, GO:0005622 - intracellular, GO:0005524 - ATP binding, GO:0000287 - magnesium ion binding, GO:0032958 - inositol phosphate biosynthetic process	TO:0000615 - abscisic acid sensitivity	
11443	ROPGEF1	Os RopGEF1, OsRopGEF1, RopGEF1	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 1	guanine nucleotide exchange factor for Rop 1, Rop-specific GEF1, Rop-specific guanine nucleotide exchange factor 1	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 1		10			Os10g0550300	LOC_Os10g40270.1				GO:0016301 - kinase activity, GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0005886 - plasma membrane		
11444	ROPGEF2	Os RopGEF2, OsRopGEF2, RopGEF2, OsSTA159	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 2	GEF for ROP 2, guanine nucleotide exchange factor for Rop 2, Rop-specific GEF2, Rop-specific guanine nucleotide exchange factor 2	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 2		5	GO:0080147:root hair cell development. LOC_Os05g48640. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0560100 	LOC_Os05g48640.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0009793 - embryonic development ending in seed dormancy, GO:0009860 - pollen tube growth, GO:0005886 - plasma membrane		PO:0009066 - anther 
11445	ROPGEF3	Os RopGEF3, OsRopGEF3, RopGEF3	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 3	GEF for ROP 3, guanine nucleotide exchange factor for Rop 3, Rop-specific GEF3, Rop-specific guanine nucleotide exchange factor 3	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 3		2			Os02g0272300	LOC_Os02g17240.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity		
11446	ROPGEF4	Os RopGEF4, OsRopGEF4, RopGEF4	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 4	GEF for ROP 4, guanine nucleotide exchange factor for Rop 4, Rop-specific GEF4, Rop-specific guanine nucleotide exchange factor 4	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 4		2			Os02g0702600	LOC_Os02g47420.4, LOC_Os02g47420.3, LOC_Os02g47420.2, LOC_Os02g47420.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity		
11447	_	P5CS2, OsP5CS2, OsALDH18B2, ALDH18B2	_	pyrroline-5-carboxylate synthetase 2, proline carboxylate synthase 2, Aldehyde dehydrogenase 18B2			1	LOC_Os01g62900. OsP5CS1 in Zhu et al. 2015. OsP5CS in Chen et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0848200	LOC_Os01g62900.1				GO:0009793 - embryonic development ending in seed dormancy, GO:0048364 - root development, GO:0042538 - hyperosmotic salinity response, GO:0016020 - membrane, GO:0004349 - glutamate 5-kinase activity, GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity, GO:0006979 - response to oxidative stress, GO:0009269 - response to desiccation, GO:0006561 - proline biosynthetic process, GO:0006970 - response to osmotic stress, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
11448	ROPGEF6	Os RopGEF6, OsRopGEF6, RopGEF6	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 6	GEF for ROP 6, guanine nucleotide exchange factor for Rop 6, Rop-specific GEF6, Rop-specific guanine nucleotide exchange factor 6	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 6		1			Os01g0673800	LOC_Os01g48300.4, LOC_Os01g48300.3, LOC_Os01g48300.2, LOC_Os01g48300.1						
11449	ROPGEF7	Os RopGEF7, OsRopGEF7, RopGEF7, OsRacGEF2	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 7	GEF for ROP 7, guanine nucleotide exchange factor for Rop 7, Rop-specific GEF7, Rop-specific guanine nucleotide exchange factor 7, small GTPase Rac/ROP guanine nucleotide exchange factor 2	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 7		9	OsRacGEF2 in Akamatsu et al. 2015. GO:0071555: cell wall organization.	 Tolerance and resistance - Disease resistance	Os09g0544800	LOC_Os09g37270.2, LOC_Os09g37270.1				GO:0080092 - regulation of pollen tube growth, GO:0008361 - regulation of cell size, GO:0007389 - pattern specification process, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0008356 - asymmetric cell division, GO:0006952 - defense response, GO:0000271 - polysaccharide biosynthetic process, GO:0048767 - root hair elongation, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0016324 - apical plasma membrane, GO:0010075 - regulation of meristem growth, GO:0009926 - auxin polar transport, GO:0009860 - pollen tube growth, GO:0009825 - multidimensional cell growth, GO:0005089 - Rho guanyl-nucleotide exchange factor activity	TO:0000112 - disease resistance	
11450	ROPGEF8	Os RopGEF8, OsRopGEF8, RopGEF8	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 8	GEF for ROP 8, guanine nucleotide exchange factor for Rop 8, Rop-specific GEF8, Rop-specific guanine nucleotide exchange factor 8	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 8		1			Os01g0760300 	LOC_Os01g55520.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity		
11451	ROPGEF9	Os RopGEF9, OsRopGEF9, RopGEF9	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 9	GEF for ROP 9, guanine nucleotide exchange factor for Rop 9, Rop-specific GEF9, Rop-specific guanine nucleotide exchange factor 9	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 9		4			Os04g0559100	LOC_Os04g47170.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0005886 - plasma membrane		
11452	ROPGEF11/12	Os RopGEF11, OsRopGEF11, RopGEF11, Os RopGEF12, OsRopGEF12, RopGEF12, OsRopGEF11/12	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 11/12	GEF for ROP 11, guanine nucleotide exchange factor for Rop 11, Rop-specific GEF11, Rop-specific guanine nucleotide exchange factor 11, GEF for ROP 12, guanine nucleotide exchange factor for Rop 12, Rop-specific GEF12, Rop-specific guanine nucleotide exchange factor 12	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 11/12		7			Os07g0481100	LOC_Os07g29780.2, LOC_Os07g29780.1				GO:0005886 - plasma membrane, GO:0005089 - Rho guanyl-nucleotide exchange factor activity		
11453	_	OsABC1-2, OsAbc1-2	_	ABC1 domain-containing gene 2		osabc1-2, osabc1-2'	2		 Tolerance and resistance - Stress tolerance	Os02g0575500	LOC_Os02g36570.1				GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0009941 - chloroplast envelope		
11454	_	ONAC001, ONAC1	_	NAC domain-containing protein 001, NAC domain-containing protein 1	_		9	LOC_Os09g33490.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0509100	LOC_Os09g33490.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent	TO:0006001 - salt tolerance	
11455	_	ONAC003, ONAC3, ONAC016, ONAC16, SNAC3	_	NAC domain-containing protein 003, NAC domain-containing protein 3, NAC domain-containing protein 16, stress-responsive NAC transcription factor 3	_		1	LOC_Os01g09550. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0191300	LOC_Os01g09550.4, LOC_Os01g09550.3, LOC_Os01g09550.2, LOC_Os01g09550.1				GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus	TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
11457	_	ONAC005, ONAC5, ONAC035, ONAC35, ONAC046, ONAC46, ONAC052, ONAC52	_	NAC domain-containing protein 005, NAC domain-containing protein 5, NAC domain-containing protein 35, NAC domain-containing protein 46, NAC domain-containing protein 52	_		8	LOC_Os08g42400.	 Other	Os08g0535800	LOC_Os08g42400.3, LOC_Os08g42400.2, LOC_Os08g42400.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11458	_	ONAC006, ONAC6	_	NAC domain-containing protein 006, NAC domain-containing protein 6	_		3	LOC_Os03g42630.	 Other	Os03g0624600	LOC_Os03g42630.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11459	_	ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1	_	NAC domain-containing protein 007, NAC domain-containing protein 7, SECONDARY WALL ASSOCIATED NAC DOMAIN PROTEIN 1, SECONDARY WALL NAC DOMAIN PROTEIN 1, secondary wall NAC transcription factor 1, secondary wall-associated NAC 1, no apical meristem	_		6	JN634070. LOC_Os06g04090. the orthologue of the rice NAC Secondary-wall Thickening factor (NST) transcription factor. the rice orthologue of NST3/SND1 from Arabidopsis.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0131700	LOC_Os06g04090.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010047 - fruit dehiscence, GO:0009901 - anther dehiscence, GO:0003677 - DNA binding, GO:0009809 - lignin biosynthetic process, GO:0009834 - secondary cell wall biogenesis, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
11460	_	ONAC008, ONAC8	_	NAC domain-containing protein 008, NAC domain-containing protein 8	_		4	LOC_Os04g43560.	 Other	Os04g0515900	LOC_Os04g43560.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11461	Y37	NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1	YELLOW 37	NAC domain-containing protein 011, NAC domain-containing protein 11, miR164-targeted NAC4, Oryza miR164-targeted NAC4	NAC DOMAIN-CONTAINING PROTEIN 11		6	LOC_Os06g46270. GO:2000028:regulation of photoperiodism, flowering. GO:1900057: positive regulation of leaf senescence. OsNAC1 in Ma et al. 2013. a target gene of miR164a.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other	Os06g0675600	LOC_Os06g46270.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0010150 - leaf senescence, GO:0006995 - cellular response to nitrogen starvation, GO:0003677 - DNA binding, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0010942 - positive regulation of cell death	TO:0000326 - leaf color, TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0000207 - plant height, TO:0000495 - chlorophyll content, TO:0000396 - grain yield, TO:0000011 - nitrogen sensitivity, TO:0000137 - days to heading, TO:0000276 - drought tolerance	PO:0001054 - 4 leaf senescence stage 
11462	NAC12	ONAC012, ONAC12	NAC DOMAIN-CONTAINING PROTEIN 12	NAC domain-containing protein 012, NAC domain-containing protein 12	NAC DOMAIN-CONTAINING PROTEIN 12		5	LOC_Os05g37080.	 Other	Os05g0442700	LOC_Os05g37080.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11463	NAC13	ONAC013, ONAC13, ONAC064, ONA064	NAC DOMAIN-CONTAINING PROTEIN 13	NAC domain-containing protein 013, NAC domain-containing protein 13, NAC domain-containing protein 64	NAC DOMAIN-CONTAINING PROTEIN 13		2	LOC_Os02g15340.	 Other	Os02g0252200	LOC_Os02g15340.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0048829 - root cap development, GO:0010455 - positive regulation of cell fate commitment		
11464	NAC14	ONAC014, ONAC14, OsNAC14, NAC14	NAC DOMAIN-CONTAINING PROTEIN 14	NAC domain-containing protein 014, NAC domain-containing protein 14	NAC DOMAIN-CONTAINING PROTEIN 14	osnac14	1	LOC_Os01g48446. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance,  Other	Os01g0675800	LOC_Os01g48446.1				GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0031347 - regulation of defense response, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0006282 - regulation of DNA repair, GO:0080134 - regulation of response to stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000040 - panicle length, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0002759 - grain number	
11465	NAC15	ONAC015, ONAC15, ONAC069, ONAC69	NAC DOMAIN-CONTAINING PROTEIN 15	NAC domain-containing protein 015, NAC domain-containing protein 15, NAC domain-containing protein 69	NAC DOMAIN-CONTAINING PROTEIN 15		7	LOC_Os07g48550.	 Other	Os07g0684800	LOC_Os07g48550.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11466	NAC17	ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111	NAC DOMAIN-CONTAINING PROTEIN 17	NAC domain-containing protein 017, NAC domain-containing protein 17, NAC domain-containing protein 30	NAC DOMAIN-CONTAINING PROTEIN 17		11	LOC_Os11g05614. OsNAC111 in Yokotani et al. 2014.	 Coloration - Others,  Tolerance and resistance - Disease resistance,  Other	Os11g0154500	LOC_Os11g05614.1				GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0051607 - defense response to virus, GO:0009698 - phenylpropanoid metabolic process, GO:0043473 - pigmentation	TO:0000386 - rice ragged stunt virus resistance, TO:0000074 - blast disease, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
11467	NAC18	ONAC018, ONAC18, OsSWN4	NAC DOMAIN-CONTAINING PROTEIN 18	NAC domain-containing protein 018, NAC domain-containing protein 18, secondary wall NAC transcription factor 4, secondary wall-associated NAC 4, SECONDARY WALL NAC DOMAIN PROTEIN 4	NAC DOMAIN-CONTAINING PROTEIN 18		10	JN634073. LOC_Os10g38834.	 Other	Os10g0532000 	LOC_Os10g38834.1				GO:0005634 - nucleus, GO:0010200 - response to chitin, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11468	NAC19	ONAC019, ONAC19	NAC DOMAIN-CONTAINING PROTEIN 19	NAC domain-containing protein 019, NAC domain-containing protein 19	NAC DOMAIN-CONTAINING PROTEIN 19		6	LOC_Os06g01230.	 Other	Os06g0101800	LOC_Os06g01230.2, LOC_Os06g01230.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11469	NAC21	ONAC021, ONAC21	NAC DOMAIN-CONTAINING PROTEIN 21	NAC domain-containing protein 021, NAC domain-containing protein 21	NAC DOMAIN-CONTAINING PROTEIN 21		9	LOC_Os09g12380.	 Other	Os09g0295000	LOC_Os09g12380.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11470	NAC22	ONAC022, ONAC22	NAC DOMAIN-CONTAINING PROTEIN 22	NAC domain-containing protein 022, NAC domain-containing protein 22	NAC DOMAIN-CONTAINING PROTEIN 22		3	LOC_Os03g04070.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0133000	LOC_Os03g04070.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11471	NAC25	ONAC025, ONAC25, OsEnS-144	NAC DOMAIN-CONTAINING PROTEIN 25	NAC domain-containing protein 025, NAC domain-containing protein 25, endosperm-specific gene 144	NAC DOMAIN-CONTAINING PROTEIN 25		11	LOC_Os11g31330.	 Other	Os11g0512000 	LOC_Os11g31330.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11472	NAC26	ONAC026, ONAC26, OsEnS-8	NAC DOMAIN-CONTAINING PROTEIN 26	NAC domain-containing protein 026, NAC domain-containing protein 26, endosperm-specific gene 8	NAC DOMAIN-CONTAINING PROTEIN 26		1	LOC_Os01g29840.	 Other	Os01g0393100	LOC_Os01g29840.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11474	NAC28	ONAC028, ONAC28	NAC DOMAIN-CONTAINING PROTEIN 28	NAC domain-containing protein 028, NAC domain-containing protein 28	NAC DOMAIN-CONTAINING PROTEIN 28		2	LOC_Os02g34970.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0555300 	LOC_Os02g34970.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048367 - shoot development, GO:0010089 - xylem development, GO:0043067 - regulation of programmed cell death	TO:0006001 - salt tolerance	
11475	NAC29	ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2	NAC DOMAIN-CONTAINING PROTEIN 29	NAC domain-containing protein 029, NAC domain-containing protein 29, SECONDARY WALL NAC DOMAIN PROTEIN 2, secondary wall NAC transcription factor 2, secondary wall-associated NAC 2, NAC SECONDARY WALL THICKENING PROMOTING1/2	NAC DOMAIN-CONTAINING PROTEIN 29		8	JN634071. LOC_Os08g02300. a CESA regulator. GO:2001006: regulation of cellulose biosynthetic process.	 Other	Os08g0115800	LOC_Os08g02300.1				GO:0003677 - DNA binding, GO:0009809 - lignin biosynthetic process, GO:0009834 - secondary cell wall biogenesis, GO:0009901 - anther dehiscence, GO:0010047 - fruit dehiscence, GO:0016020 - membrane, GO:0045893 - positive regulation of transcription, DNA-dependent		
11476	NAC31	ONAC031, ONAC31, OsSWN3	NAC DOMAIN-CONTAINING PROTEIN 31	NAC domain-containing protein 031, NAC domain-containing protein 31, secondary wall NAC transcription factor 3, secondary wall-associated NAC 3, SECONDARY WALL NAC DOMAIN PROTEIN 3	NAC DOMAIN-CONTAINING PROTEIN 31		8	JN634072. LOC_Os08g01330. a CESA regulator. GO:2001006: regulation of cellulose biosynthetic process.	 Other	Os08g0103900 	LOC_Os08g01330.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009741 - response to brassinosteroid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0010089 - xylem development, GO:0005634 - nucleus, GO:0003677 - DNA binding		
11477	NAC32	ONAC032, ONAC32, ONAC056, ONAC56	NAC DOMAIN-CONTAINING PROTEIN 32	NAC domain-containing protein 032, NAC domain-containing protein 32, NAC domain-containing protein 56	NAC DOMAIN-CONTAINING PROTEIN 32		2	LOC_Os02g56600.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0810900 	LOC_Os02g56600.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
11478	NAC37	ONAC037, ONAC37, OsNTL2, NTL2	NAC DOMAIN-CONTAINING PROTEIN 37	NAC domain-containing protein 037, NAC domain-containing protein 37, NAC membrane-bound transcription factor 2, NAC MTF2	NAC DOMAIN-CONTAINING PROTEIN 37		8	LOC_Os08g06140.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0157900	LOC_Os08g06140.3, LOC_Os08g06140.2, LOC_Os08g06140.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0048366 - leaf development, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000276 - drought tolerance, TO:0000655 - leaf development trait, TO:0006001 - salt tolerance	PO:0001050 - leaf development stage 
11479	CUC1	ONAC039, ONAC39, NAC39, OsCUC1	CUP SHAPED COTYLEDON 1	NAC domain-containing protein 039, NAC domain-containing protein 39, CUP SHAPED COTYLEDON1	NAC DOMAIN-CONTAINING PROTEIN 39		3	LOC_Os03g21030.	 Other	Os03g0327100 	LOC_Os03g21030.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11480	NAC40	ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5	NAC DOMAIN-CONTAINING PROTEIN 40	NAC domain-containing protein 040, NAC domain-containing protein 40, NAC domain-containing protein 54, NAC membrane-bound transcription factor 5, NAC MTF5, membrane-bound NAC-like TF 5	NAC DOMAIN-CONTAINING PROTEIN 40		8	LOC_Os08g44820. PO:0030123: panicle inflorescence.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os08g0562200	LOC_Os08g44820.5, LOC_Os08g44820.4, LOC_Os08g44820.3, LOC_Os08g44820.2, LOC_Os08g44820.1				GO:0005634 - nucleus, GO:0048366 - leaf development, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:2000028 - regulation of photoperiodism, flowering, GO:0003677 - DNA binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000655 - leaf development trait	PO:0025034 - leaf , PO:0001050 - leaf development stage 
11481	NAC41	ONAC041, ONAC41, ONAC050, ONAC50	NAC DOMAIN-CONTAINING PROTEIN 41	NAC domain-containing protein 041, NAC domain-containing protein 41, NAC domain-containing protein 50	NAC DOMAIN-CONTAINING PROTEIN 41		1	LOC_Os01g70110.	 Other	Os01g0925400	LOC_Os01g70110.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11482	NAC42	ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4	NAC DOMAIN-CONTAINING PROTEIN 42	NAC domain-containing protein 042, NAC domain-containing protein 42, NAC domain-containing protein 51, NAC membrane-bound transcription factor 4, NAC MTF4	NAC DOMAIN-CONTAINING PROTEIN 42		9	LOC_Os09g32040.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0493700 	LOC_Os09g32040.1				GO:0048366 - leaf development, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000655 - leaf development trait, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0001050 - leaf development stage 
11483	NAC45	ONAC045, ONAC45	NAC DOMAIN-CONTAINING PROTEIN 45	NAC domain-containing protein 045, NAC domain-containing protein 45	NAC DOMAIN-CONTAINING PROTEIN 45		11	LOC_Os11g03370.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os11g0127600 	LOC_Os11g03370.1				GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0051607 - defense response to virus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
11484	NAC47	ONAC047, ONAC47	NAC DOMAIN-CONTAINING PROTEIN 47	NAC domain-containing protein 047, NAC domain-containing protein 47	NAC DOMAIN-CONTAINING PROTEIN 47			AK068153.	 Other								
11485	NAC49	ONAC049, ONAC49, ONAC053, ONAC53, NAC53, ONAC057, ONAC57, NAC57	NAC DOMAIN-CONTAINING PROTEIN 49	NAC domain-containing protein 049, NAC domain-containing protein 49, NAC domain-containing protein 053, NAC domain-containing protein 53, NAC domain-containing protein 057, NAC domain-containing protein 57	NAC DOMAIN-CONTAINING PROTEIN 49		8	AK068393, AK072275, AK071052. AP005657. LOC_Os08g02160.	 Other		LOC_Os08g02160						
11488	NAC55	ONAC055, ONAC55	NAC DOMAIN-CONTAINING PROTEIN 55	NAC domain-containing protein 055, NAC domain-containing protein 55	NAC DOMAIN-CONTAINING PROTEIN 55		3	LOC_Os03g01870.	 Tolerance and resistance - Disease resistance,  Other	Os03g0109000 	LOC_Os03g01870.1				GO:0051607 - defense response to virus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000386 - rice ragged stunt virus resistance	
11489	NAC59	ONAC059, ONAC59	NAC DOMAIN-CONTAINING PROTEIN 59	NAC domain-containing protein 059, NAC domain-containing protein 59	NAC DOMAIN-CONTAINING PROTEIN 59		1	LOC_Os01g64310.	 Other	Os01g0862800	LOC_Os01g64310.2, LOC_Os01g64310.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11490	NAC61	ONAC061, ONAC61	NAC DOMAIN-CONTAINING PROTEIN 61	NAC domain-containing protein 061, NAC domain-containing protein 61	NAC DOMAIN-CONTAINING PROTEIN 61		10	LOC_Os10g21560.	 Tolerance and resistance - Stress tolerance,  Other	Os10g0359500 	LOC_Os10g21560.2, LOC_Os10g21560.1				GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0006001 - salt tolerance	
11491	NAC62	ONAC062, ONAC62, OsSND2, SND2	NAC DOMAIN-CONTAINING PROTEIN 62	NAC domain-containing protein 062, NAC domain-containing protein 62, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN2, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2	NAC DOMAIN-CONTAINING PROTEIN 62	snd2-c1, snd2-c2	5	LOC_Os05g48850. a close homolog of AtSND2. TO:0006064: rolled leaf. TO:0000993: cellulose content. GO:2000652: regulation of secondary cell wall biogenesis. GO:2001008: positive regulation of cellulose biosynthetic process. O:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Other	Os05g0563000 	LOC_Os05g48850.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0030244 - cellulose biosynthetic process, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009834 - secondary cell wall biogenesis		PO:0020142 - stem internode 
11492	NAC63	ONAC063, ONAC63	NAC DOMAIN-CONTAINING PROTEIN 63	NAC domain-containing protein 063, NAC domain-containing protein 63	NAC DOMAIN-CONTAINING PROTEIN 63		8	LOC_Os08g33910.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0436700 	LOC_Os08g33910.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
11493	NAC65	ONAC065, ONAC65	NAC DOMAIN-CONTAINING PROTEIN 65	NAC domain-containing protein 065, NAC domain-containing protein 65	NAC DOMAIN-CONTAINING PROTEIN 65		7	LOC_Os07g27330.	 Other	Os07g0456900	LOC_Os07g27330.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11494	NAC66	ONAC066, ONAC66	NAC DOMAIN-CONTAINING PROTEIN 66	NAC domain-containing protein 066, NAC domain-containing protein 66	NAC DOMAIN-CONTAINING PROTEIN 66		3	LOC_Os03g56580.	 Other	Os03g0777000 	LOC_Os03g56580.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11495	NAC70	ONAC070, ONAC70, OsNTL6, NTL6	NAC DOMAIN-CONTAINING PROTEIN 70	NAC domain-containing protein 070, NAC domain-containing protein 70, NAC membrane-bound transcription factor 6, NAC MTF6	NAC DOMAIN-CONTAINING PROTEIN 70		2	LOC_Os02g57650.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0822400	LOC_Os02g57650.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0048366 - leaf development	TO:0000655 - leaf development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0001050 - leaf development stage 
11496	NAC72	ONAC072, ONAC72	NAC DOMAIN-CONTAINING PROTEIN 72	NAC domain-containing protein 072, NAC domain-containing protein 72	NAC DOMAIN-CONTAINING PROTEIN 72		9	LOC_Os09g32260.	 Other	Os09g0497900 	LOC_Os09g32260.2, LOC_Os09g32260.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11497	NAC73	ONAC073, ONAC73	NAC DOMAIN-CONTAINING PROTEIN 73	NAC domain-containing protein 073, NAC domain-containing protein 73	NAC DOMAIN-CONTAINING PROTEIN 73		1	LOC_Os01g48130.	 Other	Os01g0672100 	LOC_Os01g48130.2, LOC_Os01g48130.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11498	NAC75	ONAC075, ONAC75	NAC DOMAIN-CONTAINING PROTEIN 75	NAC domain-containing protein 075, NAC domain-containing protein 75	NAC DOMAIN-CONTAINING PROTEIN 75		1	LOC_Os01g66490.	 Other	Os01g0888300 	LOC_Os01g66490.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11499	NAC60	ONAC060, ONAC60, OMTN3, OsNAC60	NAC DOMAIN-CONTAINING PROTEIN 60	NAC domain-containing protein 060, NAC domain-containing protein 60, miR164-targeted NAC3, Oryza miR164-targeted NAC3	NAC DOMAIN-CONTAINING PROTEIN 60	osnac60	12	LOC_Os12g41680. a target gene of miR164a.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os12g0610600	LOC_Os12g41680.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0010942 - positive regulation of cell death, GO:0006355 - regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0003677 - DNA binding	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
11500	_	OsCMO	_	choline monooxygenase			6	AJ578494. LOC_Os06g48510.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0698785	LOC_Os06g48510.1				GO:0019439 - aromatic compound catabolic process, GO:0009651 - response to salt stress, GO:0016708 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, GO:0009414 - response to water deprivation, GO:0005506 - iron ion binding, GO:0031456 - glycine betaine biosynthetic process, GO:0051537 - 2 iron, 2 sulfur cluster binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11501	TAR1	OsTAR1, FBL	TRYPTOPHAN AMINOTRANSFERASE 1	Trp aminotransferase 1, FIBLIKE, FIB LIKE	TRYPTOPHAN AMINOTRANSFERASE 1		5	LOC_Os05g07720. a paralog of FIB. orthologous to TAA1/TAR1/TAR2 of Arabidopsis and VT2/VT2-like of maize.	 Biochemical character	Os05g0169300	LOC_Os05g07720.1				GO:0009641 - shade avoidance, GO:0048366 - leaf development, GO:0009684 - indoleacetic acid biosynthetic process, GO:0048467 - gynoecium development, GO:0010588 - cotyledon vascular tissue pattern formation, GO:0048825 - cotyledon development, GO:0010078 - maintenance of root meristem identity, GO:0010087 - phloem or xylem histogenesis, GO:0009958 - positive gravitropism, GO:0030170 - pyridoxal phosphate binding, GO:0016846 - carbon-sulfur lyase activity, GO:0080098 - L-tyrosine:pyruvate aminotransferase activity, GO:0004838 - L-tyrosine:2-oxoglutarate aminotransferase activity, GO:0080097 - L-tryptophan:pyruvate aminotransferase activity, GO:0050362 - L-tryptophan:2-oxoglutarate aminotransferase activity, GO:0047312 - L-phenylalanine:pyruvate aminotransferase activity, GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity, GO:0080099 - L-methionine:2-oxoglutarate aminotransferase activity, GO:0050048 - L-leucine:2-oxoglutarate aminotransferase activity, GO:0080100 - L-glutamine:2-oxoglutarate aminotransferase activity, GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity, GO:0005737 - cytoplasm, GO:0009723 - response to ethylene stimulus, GO:0080022 - primary root development		
11502	TAR2	OsTAR2	TRYPTOPHAN AMINOTRANSFERASE 2	Trp aminotransferase 2	TRYPTOPHAN AMINOTRANSFERASE 2		1		 Biochemical character	Os01g0169800	LOC_Os01g07500.1				GO:0016846 - carbon-sulfur lyase activity, GO:0009958 - positive gravitropism, GO:0010078 - maintenance of root meristem identity, GO:0010087 - phloem or xylem histogenesis, GO:0030170 - pyridoxal phosphate binding, GO:0048825 - cotyledon development, GO:0080022 - primary root development, GO:0010588 - cotyledon vascular tissue pattern formation, GO:0048467 - gynoecium development, GO:0009684 - indoleacetic acid biosynthetic process, GO:0009723 - response to ethylene stimulus		
11503	_	OsSYP71	_					a Qc-SNARE protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance								
11504	_	OsSYP72	_					a Qc-SNARE protein.									
11505	_	OsBET11	_					a Qc-SNARE protein.									
11506	_	OsBET12	_					a Qc-SNARE protein.									
11507	_	OsSYP51	_					a Qc-SNARE protein.									
11508	_	OsSYP52	_					a Qc-SNARE protein.									
11509	_	OsSYP61	_					a Qc-SNARE protein.									
11510	_	OsSYP62	_					a Qc-SNARE protein.									
11511	_	OsUSE11	_					a Qc-SNARE protein.									
11512	_	OsUSE12	_					a Qc-SNARE protein.									
11513	_	OsSFT11	_					a Qc-SNARE protein.									
11514	_	OsSFT12	_					a Qc-SNARE protein.									
11515	_	OsMPG1, MPG1, OsVTC1-1, VTC1-1	_	mannose-1-phosphate guanyl transferase 1		vtc1-1	1	JN408497. Q941T9. one of three rice GMPase (GDP-mannose pyrophosphorylase) homologs. GO:2000082: regulation of L-ascorbic acid biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0847200	LOC_Os01g62840.1				GO:0009416 - response to light stimulus, GO:0005525 - GTP binding, GO:0042742 - defense response to bacterium, GO:0060359 - response to ammonium ion, GO:0019430 - removal of superoxide radicals, GO:0006979 - response to oxidative stress, GO:0009058 - biosynthetic process, GO:0009298 - GDP-mannose biosynthetic process, GO:0009646 - response to absence of light, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0009651 - response to salt stress, GO:0030244 - cellulose biosynthetic process, GO:0004475 - mannose-1-phosphate guanylyltransferase activity, GO:0010193 - response to ozone	TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000075 - light sensitivity, TO:0006001 - salt tolerance	PO:0025034 - leaf 
11516	_	OsMPG2	_	mannose-1-phosphate guanyl transferase 2			3	JN408498.	 Biochemical character	Os03g0208900	LOC_Os03g11050.3, LOC_Os03g11050.1				GO:0005777 - peroxisome, GO:0016779 - nucleotidyltransferase activity, GO:0009058 - biosynthetic process, GO:0046686 - response to cadmium ion		
11517	_	OsMPG3, MPG3, OsVTC1-3, VTC1-3	_	mannose-1-phosphate guanyl transferase 3			3	JN408499. Q84JH5. one of three rice GMPase (GDP-mannose pyrophosphorylase) homologs.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0268400	LOC_Os03g16150.3, LOC_Os03g16150.2, LOC_Os03g16150.1				GO:0009646 - response to absence of light, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0060359 - response to ammonium ion, GO:0042742 - defense response to bacterium, GO:0030244 - cellulose biosynthetic process, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0010193 - response to ozone, GO:0009298 - GDP-mannose biosynthetic process, GO:0005525 - GTP binding, GO:0004475 - mannose-1-phosphate guanylyltransferase activity	TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance	PO:0009005 - root 
11518	_	OsMPG4, MPG4, OsVTC1-8, VTC1-8	_	mannose-1-phosphate guanyl transferase 4			8	JN408500. Q6Z9A3. one of three rice GMPase (GDP-mannose pyrophosphorylase) homologs.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0237200	LOC_Os08g13930.2, LOC_Os08g13930.1				GO:0009753 - response to jasmonic acid stimulus, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0005525 - GTP binding, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0010193 - response to ozone, GO:0009298 - GDP-mannose biosynthetic process, GO:0060359 - response to ammonium ion, GO:0009651 - response to salt stress, GO:0030244 - cellulose biosynthetic process, GO:0004475 - mannose-1-phosphate guanylyltransferase activity		
11519	HSP90	OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94	RICE 90KDA HEAT SHOCK PROTEIN	rice 90kDa heat shock protein, heat shock protein90, heat shock protein 90, glucose-regulated protein 94	RICE 90KDA HEAT SHOCK PROTEIN		6	AB037681.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0716700	LOC_Os06g50300.1				GO:0009934 - regulation of meristem structural organization, GO:0042026 - protein refolding, GO:0009408 - response to heat, GO:0005773 - vacuole, GO:0003773 - heat shock protein activity, GO:0005524 - ATP binding, GO:0010075 - regulation of meristem growth, GO:0009409 - response to cold, GO:0009306 - protein secretion, GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion, GO:0005783 - endoplasmic reticulum	TO:0000259 - heat tolerance, TO:0000112 - disease resistance	
11520	_	OsSgt1, SGT1, OsSGT1, Os SGT1	_	suppressor of the G2 allele of skp1			1	Q0JL44. BAF05534. AAF18438. a subunit of the SCF ubiquitin ligase complex. a component in the OsRac1-mediated complex.	 Tolerance and resistance - Disease resistance	Os01g0624500	LOC_Os01g43540.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000112 - disease resistance	
11521	SOD2	OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn	SUPEROXIDE DISMUTASE 2	superoxide dismutase 2	SUPEROXIDE DISMUTASE 2		3	LOC_Os03g11960.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0219200	LOC_Os03g11960.4, LOC_Os03g11960.3, LOC_Os03g11960.2, LOC_Os03g11960.1				GO:0005777 - peroxisome, GO:0005507 - copper ion binding, GO:0005773 - vacuole, GO:0004784 - superoxide dismutase activity, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0019430 - removal of superoxide radicals	TO:0006001 - salt tolerance	
11522	SOD4	OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3	SUPEROXIDE DISMUTASE 4	superoxide dismutase 4, Cu-dependent SOD 2	SUPEROXIDE DISMUTASE 4		8	P93407. D85239. OsCu/Zn-SOD. OsCSD2 in Andres-Borderia et al. 2017. Cu/ZnSOD3 in Huang et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0561700	LOC_Os08g44770.2, LOC_Os08g44770.1				GO:0009651 - response to salt stress, GO:0046688 - response to copper ion, GO:0019430 - removal of superoxide radicals, GO:0010039 - response to iron ion, GO:0009570 - chloroplast stroma, GO:0008270 - zinc ion binding, GO:0009416 - response to light stimulus, GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0004784 - superoxide dismutase activity, GO:0009579 - thylakoid	TO:0006001 - salt tolerance	
11523	_	OsPMS1, OsPMS2	_	mismatch repair protein OsPMS1			2			Os02g0592300	LOC_Os02g37920.1				GO:0003697 - single-stranded DNA binding, GO:0030983 - mismatched DNA binding, GO:0032407 - MutSalpha complex binding, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0032389 - MutLalpha complex, GO:0048316 - seed development, GO:0007131 - reciprocal meiotic recombination, GO:0009555 - pollen development, GO:0006298 - mismatch repair		
11524	_	OsMLH1	_				1			Os01g0958900	LOC_Os01g72880.1				GO:0005712 - chiasma, GO:0003697 - single-stranded DNA binding, GO:0000795 - synaptonemal complex, GO:0005524 - ATP binding, GO:0006298 - mismatch repair, GO:0007131 - reciprocal meiotic recombination, GO:0016887 - ATPase activity, GO:0030983 - mismatched DNA binding, GO:0032389 - MutLalpha complex, GO:0032407 - MutSalpha complex binding, GO:0032390 - MutLbeta complex		
11525	_	OsRINGC2-1, RINGC2-1	_	RING-C2 type protein 1			11	LOC_Os11g01190.		Os11g0102800					GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0030014 - CCR4-NOT complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
11526	_	OsRINGC2-2	_	RING-C2 type protein 2			12			Os12g0102400	LOC_Os12g01190.2				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
11527	_	OsLRP, OsLRR1, LRR1	_	leucine-rich repeat protein, extracellular leucine-rich repeat (eLRR) domain protein 1, LEUCINE-RICH REPEAT PROTEIN 1			1	LOC_Os01g59440. AF364178. XB21 interacting protein (XB21IP).	 Tolerance and resistance - Disease resistance	Os01g0809300	LOC_Os01g59440.3, LOC_Os01g59440.2, LOC_Os01g59440.1				GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
11528	_	OsHIR1, OsHSI1	_	hypersensitive-induced reaction protein 1			8	AF374475. an OsHIR1-interacting protein.	 Tolerance and resistance - Disease resistance	Os08g0398400	LOC_Os08g30790.3, LOC_Os08g30790.2, LOC_Os08g30790.1				GO:0005773 - vacuole, GO:0009507 - chloroplast, GO:0005886 - plasma membrane		
11529	_	OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2	_	somatic embryogenesis receptor-like kinase 1, somatic embryogenesis receptor kinase 1, BRI1-associated receptor kinase 1, BTH-induced SERK1, benzothiadiazole-induced SERK1, bri1-associated receptor kinase 1 (BAK1) homologue 1, small grain 2		sg2	8	OsBISERK1 in Hu et al. 2005 and Song et al. 2008. AY463361. BI118743. OsSERK1 in Ito et al. 2005. AB188246, AB188247. LOC_Os08g07760. a rice ortholog of Arabidopsis SERK1/SERK2/BAK1.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os08g0174700	LOC_Os08g07760.1				GO:0032502 - developmental process, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0042127 - regulation of cell proliferation	TO:0002759 - grain number, TO:0002677 - brassinosteroid sensitivity, TO:0000397 - grain size, TO:0000207 - plant height, TO:0002688 - leaf lamina joint bending, TO:0000734 - grain length	
11530	_	OsVIT2, OsVIT1	_	Vacuolar Iron Transporter 2, vacuolar Fe and Mn transporter 1		osvit2-1	9	Q6ERE5. OsVIT2 in Zhang et al. 2012.		Os09g0396900	LOC_Os09g23300.1				GO:0016021 - integral to membrane, GO:0055072 - iron ion homeostasis, GO:0006811 - ion transport, GO:0005774 - vacuolar membrane		
11531	_	OsPE	_	polyembryo, Polyembryony, polyembryonic mutant		OsPE 1, OsPE 2, OsPE 3	3		 Seed - Morphological traits - Embryo	Os03g0241300	LOC_Os03g13810.3, LOC_Os03g13810.2, LOC_Os03g13810.1						
11532	_	OsLCYe, OsLCYepsilon	_	e-ionone-forming lycopene cyclase, lycopene e-cyclase, epsilon-ionone-forming lycopene cyclase, lycopene epsilon-cyclase			1		 Biochemical character	Os01g0581300	LOC_Os01g39960.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0045435 - lycopene epsilon cyclase activity, GO:0016123 - xanthophyll biosynthetic process, GO:0016120 - carotene biosynthetic process		
11533	_	OsLCYb, OsLCYbeta, OsLYCb, OsLCY	_	lycopene e-cyclase, lycopene beta-cyclase			2	AP005849.	 Biochemical character	Os02g0190600	LOC_Os02g09750.1				GO:0045436 - lycopene beta cyclase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016117 - carotenoid biosynthetic process, GO:0016120 - carotene biosynthetic process		
11534	NGLF	OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM	NARROW GRAIN AND LOW FERTILITY	narrow grain and low fertility, arginase, Osarginase	ARGINASE	nglf-1, nglf-2	4	LOC_Os04g01590. an arginine hydrolysis enzyme. HM369061.	 Biochemical character,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0106300	LOC_Os04g01590.1				GO:0006527 - arginine catabolic process, GO:0004053 - arginase activity, GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0042742 - defense response to bacterium, GO:0050897 - cobalt ion binding	TO:0000050 - inflorescence branching, TO:0002759 - grain number, TO:0006001 - salt tolerance, TO:0002730 - grain shape	
11535	SPL1	OsSPL1	SPHINGOSINE-1-PHOSPHATE LYASE 1	Sphingosine-1-Phoshpate Lyase 1	SPHINGOSINE-1-PHOSPHATE LYASE 1				 Tolerance and resistance - Stress tolerance								
11536	_	DDF1	_	Dwarf and deformed flower 1, dwarf and deformed flower 1-1		ddf1-1	6	an F-box protein. DDF1 was preliminarily mapped in a region between markers RM588 and RM587 on chromosome 6 with the genetic distances of 3.8 cM and 2.4 cM to the two markers, respectively.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn								
11538	PSTOL1	Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO	P-STARVATION TOLERANCE 1	phosphorus-starvation tolerance 1, protein kinase Pstol1, P-STarvation TOLerance 1, phosphorus uptake 1, Phosphorus uptake1			12	BAK26566. AB458444. A major quantitative trait locus for phosphorus-deficiency tolerance, Pup1, was identified in the traditional aus-type rice variety Kasalath. PSTOL1 is a Pup1-specific protein kinase gene and the most obvious candidate gene for Pup1. japonica-type Nipponbare rice varieties naturally lacks the PSTOL1 gene. TO:0000985: root system morphology trait.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance			GR:0060610			GO:0005524 - ATP binding, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0004674 - protein serine/threonine kinase activity	TO:0000102 - phosphorus sensitivity, TO:0000168 - abiotic stress trait	
11539	_	OsPupK20-2	_				12	AB458444. BAK26565. A major quantitative trait locus for phosphorus-deficiency tolerance, Pup1, was identified in the traditional aus-type rice variety Kasalath. The Pup1 dirigent gene OsPupK20-2 is downstream of PSTOL1.	 Tolerance and resistance - Stress tolerance								
11540	_	OsPupK05-1	_				12	BAH79994. AB458444.									
11541	_	OsPupK04-1	_				12	AB458444. BAH79993. a putative fatty acid oxygenase.							GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
11542	_	OsPupK29-1	_				12	AB458444. BAH80018.									
11543	_	OsPupK01	_				12	AB458444.									
11544	_	OsPupK53	_				12	AB458444.									
11545	_	OsPupK67	_				12	AB458444.									
11546	_	OsMac1	_	MAP-kinase activating protein 1			6			Os06g0726600	LOC_Os06g51100.2, LOC_Os06g51100.1				GO:0016301 - kinase activity		
11547	_	OsBI-1, OsBI1, BI1	_	Bax inhibitor-1			2	Q9MBD8.	 Tolerance and resistance - Stress tolerance	Os02g0125300	LOC_Os02g03280.3, LOC_Os02g03280.2				GO:0016021 - integral to membrane, GO:0010446 - response to alkalinity, GO:0009414 - response to water deprivation, GO:0006983 - ER overload response, GO:0006915 - apoptosis, GO:0000038 - very-long-chain fatty acid metabolic process, GO:0005635 - nuclear envelope, GO:0005783 - endoplasmic reticulum, GO:0043066 - negative regulation of apoptosis	TO:0000481 - alkali sensitivity	
11548	S44	S44(t)	HYBRID STERILITY 44	HYBRID STERILITY 44(t)			6	The sterility gene S44(t) was restricted to a 1.2 cM region flanked by RM5814 and RM20695 on the long arm of chromosome 6.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility					1.2			
11549	PP2C1	OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108	PROTEIN PHOSPHATASE 2C-1	protein phosphatase2C-1, protein phosphatase2C-l, salt-induced PP2C Protein 1, protein phosphatase 2C68, protein phosphatase 2C 68, protein phosphatase 108			9	LOC_Os09g15670. Q0J2L7. OsPP2C68 in Xue et al. 2008, Xiong et al. 2014, Chen et al. 2014, Hong et al. 2016, Lin et al. 2017. OsPP2C1 in Li et al. 2013. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0325700	LOC_Os09g15670.1				GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0009651 - response to salt stress, GO:0010119 - regulation of stomatal movement, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11550	BAG1	OsBAG1	BCL-2-ASSOCIATED ATHANOGENE 1	Bcl-2-associated athanogene 1	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 1		9		 Tolerance and resistance - Stress tolerance	Os09g0524800	LOC_Os09g35630.1				GO:0005739 - mitochondrion		
11551	BAG2	OsBAG2	BCL-2-ASSOCIATED ATHANOGENE 2	Bcl-2-associated athanogene 2	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 2		8		 Tolerance and resistance - Stress tolerance	Os08g0546100	LOC_Os08g43270.1				GO:0005739 - mitochondrion		
11552	BAG4	OsBAG4, EIP1	BCL-2-ASSOCIATED ATHANOGENE 4	Bcl-2-associated athanogene 4, EBR1-interacting protein 1	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 4		1	LOC_Os01g61500. KX196162. GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0831200	LOC_Os01g61500.2, LOC_Os01g61500.1				GO:0042742 - defense response to bacterium, GO:0005829 - cytosol, GO:0006952 - defense response, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0010228 - vegetative to reproductive phase transition, GO:0012501 - programmed cell death, GO:0052033 - pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity, GO:0051087 - chaperone binding, GO:0050832 - defense response to fungus	TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000112 - disease resistance, TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
11553	BAG5	OsBAG5	BCL-2-ASSOCIATED ATHANOGENE 5	Bcl-2-associated athanogene 5	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 5		11		 Tolerance and resistance - Stress tolerance	Os11g0506800	LOC_Os11g31060.1						
11554	BAG6	OsBAG6	BCL-2-ASSOCIATED ATHANOGENE 6	Bcl-2-associated athanogene 6	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 6		2		 Tolerance and resistance - Stress tolerance	Os02g0719700	LOC_Os02g48780.1						
11555	BAG3	OsBAG3	BCL-2-ASSOCIATED ATHANOGENE 3	Bcl-2-associated athanogene 3	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 3		6		 Tolerance and resistance - Stress tolerance	Os06g0126500	LOC_Os06g03640.1				GO:0005739 - mitochondrion		
11556	_	OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT	_	O-Methyltransferase 26, caffeoyl-CoA O-methyltransferase, caffeoyl CoA O-methyltransferase 20, Caffeoyl coenzyme A 3-O-methyltransferase			8	AB110168. Q9XGP7. D15839.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0498100	LOC_Os08g38900.3, LOC_Os08g38900.2, LOC_Os08g38900.1				GO:0046872 - metal ion binding, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0008171 - O-methyltransferase activity, GO:0009642 - response to light intensity, GO:0009807 - lignan biosynthetic process, GO:0005634 - nucleus	TO:0000432 - temperature response trait, TO:0000460 - light intensity sensitivity, TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
11557	_	ROMT-17, ROMT17, CCoAOMT1	_	caffeoyl CoA O-methyltransferase 1, Caffeoyl-CoA O-methyltransferase 2			8	Q7F8T6. caffeoyl-CoA 3-OMT. LOC_Os08g38910. Caffeoyl-CoA O-methyltransferase 2 in Sudo et al. 2008.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0498400	LOC_Os08g38910.4, LOC_Os08g38910.3, LOC_Os08g38910.2, LOC_Os08g38910.1				GO:0046688 - response to copper ion, GO:0009807 - lignan biosynthetic process, GO:0008171 - O-methyltransferase activity, GO:0006952 - defense response, GO:0046872 - metal ion binding, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity	TO:0000731 - lignin content, TO:0000021 - copper sensitivity, TO:0000112 - disease resistance, TO:0000733 - lignin biosynthesis trait	
11558	_	ROMT-27, ROMT27	_				8	caffeoyl-CoA 3-OMT.	 Biochemical character	Os08g0498600 	LOC_Os08g38920.1				GO:0008171 - O-methyltransferase activity		
11559	_	OsMGT, OsMRS2-1	_	Mg transporter, magnesium transporter, MRS2/MGT family member 1			6	Q67UQ7.	 Biochemical character	Os06g0650800	LOC_Os06g44150.1				GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity, GO:0005773 - vacuole		
11560	_	OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1	_	Mg2+/H+ exchanger, magnesium/hydrogen exchanger, Na+/Ca2+ Exchanger 14, Sodium/calcium exchanger 14			11	LOC_Os11g43860. Q2R041. OsMHX2 in Singh et al. 2013. OsMHX1 in Pittman and Hirschi 2016. Oryza barthii: ObarMHX1: OBART11G21860 (probably partial length sequence), Oryza brachyantha: ObraMHX1: OB11G26470, Oryza glaberrima: OglaMHX1: ORGLA11G0176700 (only partial length sequence available), Oryza glumipatula: OgluMHX1: OGLUM11G21190, Oryza longistaminata: OlMHX1: OLONG_007999, Oryza meridionalis: OmMHX1: OMERI11G18100, Oryza nivara: OnMHX1: ONIVA11G22170, Oryza punctata: OpMHX1: OPUNC11G18390, Oryza rufipogon: OrMHX1: ORUFI11G23770.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0660000	LOC_Os11g43860.2, LOC_Os11g43860.1				GO:0015491 - cation:cation antiporter activity, GO:0005774 - vacuolar membrane, GO:0016021 - integral to membrane, GO:0006826 - iron ion transport, GO:0006829 - zinc ion transport, GO:0009411 - response to UV, GO:0015693 - magnesium ion transport, GO:0009414 - response to water deprivation	TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance	
11561	_	IBF1, OsFBX310, FBX310	_	inhibitor for brown furrows1, F-box protein 310		ibf1, ibf1-1, ibf1-2	9	LOC_Os09g12150.a kelch repeat-containing F-box protein.	 Coloration - Others	Os09g0292900	LOC_Os09g12150.1						
11562	_	OsSP1, OsSub20, SUB20	_	Serine protease 1, Subtilisin 20, SUBTILISIN 20			2	AB037371. LOC_Os02g44590. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0665300	LOC_Os02g44590.1				GO:0043086 - negative regulation of catalytic activity, GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
11563	_	OsAP1	_	Aspartic acid protease 1, aspartic proteinase			5	D12777. P42211. C26503, AU091279.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0137400	LOC_Os05g04630.6, LOC_Os05g04630.5, LOC_Os05g04630.4, LOC_Os05g04630.3, LOC_Os05g04630.2, LOC_Os05g04630.1				GO:0006508 - proteolysis, GO:0006629 - lipid metabolic process, GO:0004190 - aspartic-type endopeptidase activity, GO:0005773 - vacuole	TO:0000432 - temperature response trait	
11564	_	Oryzasin	_	Oryzasin, Oryzasin 1			5	D32144, D32165. AF285164. Q42456. Aspartic acid protease. aspartic protease.	 Biochemical character	Os05g0567100	LOC_Os05g49200.2, LOC_Os05g49200.1				GO:0004190 - aspartic-type endopeptidase activity, GO:0006629 - lipid metabolic process, GO:0005773 - vacuole, GO:0006508 - proteolysis		
11565	_	OsCP1	_	Cysteine protease 1			11	X80876.	 Biochemical character	Os11g0255300	LOC_Os11g14900.5, LOC_Os11g14900.4, LOC_Os11g14900.3, LOC_Os11g14900.2, LOC_Os11g14900.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
11566	_	OsCatB	_	cysteine protease OsCatB			5	AY916493.	 Biochemical character	Os05g0310500	LOC_Os05g24550.6, LOC_Os05g24550.5, LOC_Os05g24550.4, LOC_Os05g24550.3, LOC_Os05g24550.2, LOC_Os05g24550.1				GO:0005773 - vacuole, GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
11567	_	OsSTE1, OsDWF7	_	Sterol methyltransferase 1, Dwarf 7			1		 Biochemical character,  Vegetative organ - Culm	Os01g0134500	LOC_Os01g04260.1				GO:0016126 - sterol biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0000248 - C-5 sterol desaturase activity		
11568	_	OsABP, OsRH31	_	ATP-binding protein, DEAD-box helicase ATP-binding protein, OsABP helicase, DEAD-box ATP-dependent RNA helicase 31, RNA helicase 31			6	Q0DBU5. LOC_Os06g33520. DEAD-box RNA helicase protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0526600	LOC_Os06g33520.1				GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0009507 - chloroplast, GO:0003723 - RNA binding		
11569	_	OsFBX234, OsFbox369, Os_F0191	_	F-box domain containing protein 234, F-box protein 369			7	LOC_Os07g23900. OsFBX234 in Macovei et al. 2012.		Os07g0421000 	LOC_Os07g23900.1						
11570	_		_	RPA1 subunit of RNA polymerase I, RNA polymerase I  RPA1 subunit			6		 Biochemical character	Os06g0612200	LOC_Os06g40950.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003899 - DNA-directed RNA polymerase activity, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
11572	_	OsRH26	_	DEAD-box ATP-dependent RNA helicase 26, RNA helicase 26			1	Q0JL73. LOC_Os01g43130. DEAD-box RNA helicase protein.	 Biochemical character	Os01g0618500	LOC_Os01g43130.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0009409 - response to cold		
11573	_	OsRH25, RH25	_	DEAD-box ATP-dependent RNA helicase 25, RNA helicase 25			1	Q5ZBH5. LOC_Os01g43120. DEAD-box RNA helicase protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0618400	LOC_Os01g43120.1				GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity	TO:0000303 - cold tolerance	
11574	_	OsImpbeta1, OsImp beta 1	_	beta subunit of importin, importin beta, importin beta 1, importin beta1		osimpbeta1, osimpbeta1-1, osimpbeta1-2	5		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os05g0353400	LOC_Os05g28510.4, LOC_Os05g28510.3, LOC_Os05g28510.2, LOC_Os05g28510.1				GO:0006913 - nucleocytoplasmic transport, GO:0008565 - protein transporter activity, GO:0006886 - intracellular protein transport, GO:0005643 - nuclear pore		
11575	_		_	chloroplast precursor of 50S ribosomal protein L21, chloroplast 50S ribosomal protein L21			5		 Biochemical character	Os05g0557800	LOC_Os05g48410.1				GO:0000741 - karyogamy, GO:0009567 - double fertilization forming a zygote and endosperm, GO:0009553 - embryo sac development, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0005840 - ribosome, GO:0005739 - mitochondrion, GO:0006412 - translation, GO:0009555 - pollen development		
11576	_	OscTPI	_	triose phosphate isomerase, stress and methylglyoxal inducible triose phosphate isomerase			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0841600 	LOC_Os01g62420.4, LOC_Os01g62420.3, LOC_Os01g62420.2, LOC_Os01g62420.1				GO:0005739 - mitochondrion, GO:0004807 - triose-phosphate isomerase activity, GO:0005507 - copper ion binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0009570 - chloroplast stroma, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0010043 - response to zinc ion, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0006096 - glycolysis, GO:0044262 - cellular carbohydrate metabolic process		
11577	_	OsSRP-LRS, OsSPN, OrysaZxa	_	OsSerpin, Serpin-ZXA			3	serpin family protein. Q75H81.	 Biochemical character	Os03g0610650	LOC_Os03g41419.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0030162 - regulation of proteolysis		
11578	_	OsSRP-PLP, OrysaZ9	_	non-inhibitory serpin-Z9			11	serpin family protein. Q2R8P2. CI370534, CI410938.	 Biochemical character	Os11g0222200	LOC_Os11g11500.1				GO:0030162 - regulation of proteolysis, GO:0004867 - serine-type endopeptidase inhibitor activity		
11579	_	OsSRP-QKG, OrysaZ12	_	serpin-Z12			1	serpin family protein. Q5NBM0.	 Biochemical character	Os01g0267300	LOC_Os01g16200.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0030162 - regulation of proteolysis		
11580	_	OsSRP-LGC, OrysaZ1	_	Serpin-Z1			1	serpin family protein. Q94DW6.	 Biochemical character	Os01g0765400	LOC_Os01g56010.1				GO:0030162 - regulation of proteolysis, GO:0004867 - serine-type endopeptidase inhibitor activity		
11581	_	OsSRP-FRS, OrysaZxb	_	Serpin-ZXB			3	serpin family protein. Q10GX0.	 Biochemical character	Os03g0610800	LOC_Os03g41438.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0030162 - regulation of proteolysis		
11582	_	OsSRP-PTY, OrysaZ10	_	non-inhibitory serpin-10			4	serpin family protein. Q7XMK1, Q7XMK0.	 Biochemical character	Os04g0533700	LOC_Os04g45110.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11583	_	OsSRP-FAS, OrysaZ6c	_	serpin-Z6C			11	serpin family protein. Q53MD1.	 Biochemical character	Os11g0231200	LOC_Os11g12460.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11584	_	OsSRP-FLC, OrysaZ2b	_	Serpin-Z2B			11	serpin family protein. Q53KS9.	 Biochemical character	Os11g0239200	LOC_Os11g13540.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11585	_	OsSRP-PGY, OrysaZ11	_	non-inhibitory serpin-Z11			4	serpin family protein. Q7XMK0. LOC_Os04g45120.	 Biochemical character	Os04g0533800	LOC_Os04g45120.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11586	_	OsSRP-GMS, OrysaZ5	_	serpin-Z5			11	serpin family protein. Q53MD3.	 Biochemical character	Os11g0232000	LOC_Os11g12520.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11587	_	OsSRP-LLS, OrysaZ2a	_	Serpin-Z2A			11	serpin family protein. Q53KS8.	 Biochemical character	Os11g0239000	LOC_Os11g13530.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11588	_	OsSRP-GAA, OrysaZ6a	_	serpin-Z6A			11	serpin family protein. Q53Q31.	 Biochemical character	Os11g0230400	LOC_Os11g12410.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11589	_	OsSRP-GRA, OrysaZ6b	_	Serpin-Z6B			11	serpin family protein. Q53Q32.	 Biochemical character	Os11g0230700	LOC_Os11g12420.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11590	_	OsSRP-PSG, OrysaZ8	_	serpin-Z8			11	serpin family protein. Q53P09.	 Biochemical character	Os11g0224800	LOC_Os11g11760.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11592	_	Spin1, SPIN1	_	SPL11-interacting protein1, SPL11-interacting protein 1			3	Q75GR5. a member of the STAR (for signal transduction and activation of RNA) family. K homology domain-containing RNA-binding protein.	 Reproductive organ - Heading date	Os03g0815700	LOC_Os03g60110.1				GO:0003677 - DNA binding, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0009908 - flower development, GO:0003723 - RNA binding	TO:0002616 - flowering time	
11593	_	Os-FLS2, FLS2, OsFLS2	_	flagellin sensitive2			4	leucine-rich repeat transmembrane receptor kinase. flg22 Receptor. rice FLS2 homolog.  a rice ortholog of Arabidopsis FLS2.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0618700	LOC_Os04g52780.1				GO:0002221 - pattern recognition receptor signaling pathway, GO:0032490 - detection of molecule of bacterial origin, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000315 - bacterial disease resistance	
11594	PIL13	OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7	_	phytochrome-interacting factor-like protein 1, PIF-like gene 1, PHYTOCHROME INTERACTING FACTOR-LIKE 13, basic helix-loop-helix protein 152, Phytochrome-interacting factor 7			3		 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os03g0782500	LOC_Os03g56950.1, LOC_Os03g56950.2, LOC_Os03g56950.3, LOC_Os03g56950.4, LOC_Os03g56950.5, LOC_Os03g56950.6, LOC_Os03g56950.7				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009628 - response to abiotic stimulus	TO:0002616 - flowering time, TO:0000164 - stress trait, TO:0000168 - abiotic stress trait, TO:0000276 - drought tolerance	
11596	_	XAX1, OsXAX1	_	xylosyl arabinosyl substitution of xylan 1		xax1	2	Glycosyltransferase. LOC_Os02g22380.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0329800	LOC_Os02g22380.1				GO:0045492 - xylan biosynthetic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
11597	_	OsDSHCT	_	DOB1/SK12/helY-like DEAD-box Helicase			11		 Tolerance and resistance - Stress tolerance	Os11g0176200	LOC_Os11g07500.2, LOC_Os11g07500.1				GO:0010093 - specification of floral organ identity, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0003676 - nucleic acid binding		
11598	_	OsDBH	_	DEAD-Box Helicase			4		 Tolerance and resistance - Stress tolerance	Os04g0486800	LOC_Os04g40970.1				GO:0008026 - ATP-dependent helicase activity, GO:0006310 - DNA recombination, GO:0003676 - nucleic acid binding, GO:0005524 - ATP binding		
11599	MIR414	miR414, osa-MIR414	MICRORNA414	MICRORNA414	_		11	miRBASE accession: MI0001434.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
11600	MIR408	miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408	MICRORNA408	MICRORNA408	_		1	miRBASE accession: MI0001149. Target gene: Os03g0259100.LM379354 LM383078	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000429 - salt sensitivity	
11601	MIR164E	miR164e, osa-MIR164e	MICRORNA164E	MICRORNA164e, osa-miRNA164e	_		3	miRBASE accession: MI0001105. AY551228. HM139293-HM139330 (O. sativa, O. rufipogon).LM379318	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
11602	_	DDX46	_	ATP-dependent RNA helicase DDX46	_		8	Q0J7Y8.	 Biochemical character						GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding		
11603	TOGR1	DDX47, OsRH10	THERMOTOLERANT GROWTH REQUIRED1	ATP-dependent RNA helicase DDX47, RNA helicase 10, thermotolerant growth required1	_	togr1, togr1-1, togr1-2, togr1-3, togr1-4	3	Q7Y183. LOC_Os03g46610. DEAD-box RNA helicase protein. togr1-1 is a spontaneous recessive thermosensitive dwarf mutant isolated from an indica variety, Zhongxian 3037 (Wang et al. 2016).	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os03g0669000	LOC_Os03g46610.2, LOC_Os03g46610.1				GO:0007623 - circadian rhythm, GO:0006364 - rRNA processing, GO:0005730 - nucleolus, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0034337 - RNA folding, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000207 - plant height	
11604	_	PRP5, OsRH42	_	Pre-mRNA-processing ATP-dependent RNA helicase PRP5, RNA helicase 42	_		8	Q84UQ1. LOC_Os08g06344. DEAD-box RNA helicase protein.	 Biochemical character	Os08g0159900	LOC_Os08g06344.3, LOC_Os08g06344.2, LOC_Os08g06344.1				GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding		
11605	_	RNAhA	_	RNA helicase A	_		1		 Biochemical character	Os01g0767700	LOC_Os01g56190.1				GO:0003676 - nucleic acid binding, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding		
11606	_	CTD2	_	ATP-dependent helicase CTD2	_		2		 Biochemical character	Os02g0650800	LOC_Os02g43460.1						
11607	_	OsKu70, Ku70	_	rice homolog of Ku70, Ku70 homolog		osku70, osku70-1, osku70-2, ku70	7	Q7F1M0.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os07g0184900	LOC_Os07g08729.1				GO:0043564 - Ku70:Ku80 complex, GO:0006281 - DNA repair, GO:0000723 - telomere maintenance, GO:0003684 - damaged DNA binding, GO:0003690 - double-stranded DNA binding, GO:0004003 - ATP-dependent DNA helicase activity, GO:0005524 - ATP binding, GO:0032502 - developmental process, GO:0009408 - response to heat, GO:0006310 - DNA recombination, GO:0042162 - telomeric DNA binding, GO:0006303 - double-strand break repair via nonhomologous end joining	TO:0000168 - abiotic stress trait, TO:0000357 - growth and development trait, TO:0000485 - sterility related trait	
11608	_	OsKu80, Ku80	_	rice homolog of Ku80			3	Q75IP6.	 Biochemical character	Os03g0856200	LOC_Os03g63920.1, LOC_Os03g63910.1				GO:0003690 - double-stranded DNA binding, GO:0003684 - damaged DNA binding, GO:0000723 - telomere maintenance, GO:0042162 - telomeric DNA binding, GO:0009408 - response to heat, GO:0006310 - DNA recombination, GO:0043564 - Ku70:Ku80 complex, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0005524 - ATP binding, GO:0004003 - ATP-dependent DNA helicase activity		
11609	_	OsLig4, Lig4	_	DNA ligase 4, rice homolog of Lig4			4	Q7X7E9.	 Biochemical character	Os04g0606450	LOC_Os04g51700.1				GO:0006260 - DNA replication, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0003910 - DNA ligase (ATP) activity, GO:0051103 - DNA ligation during DNA repair, GO:0006310 - DNA recombination		
11610	_	OsBRCA1	_				5	homologous recombination (HR)-related gene. RING Finger Protein (OsRFP). LOC_Os05g43610.		Os05g0512000 	LOC_Os05g43610.1				GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
11611	_	OsBRCA2	_				1	homologous recombination (HR)-related gene		Os01g0164900 	LOC_Os01g07110.1				GO:0006302 - double-strand break repair		
11612	_	MRE11, OsMRE11	_				4	homologous recombination (HR)-related gene. a homolog of Arabidopsis AtMRE11. GO:0090305:nucleic acid phosphodiester bond hydrolysis.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0635900	LOC_Os04g54340.1				GO:0004519 - endonuclease activity, GO:0004527 - exonuclease activity, GO:0030145 - manganese ion binding, GO:0007126 - meiosis, GO:0006302 - double-strand break repair, GO:0005634 - nucleus		
11613	_	OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4	_				1	homologous recombination (HR)-related gene. a rice homolog of the yeast MUS81 endonuclease gene. GO:0090305:nucleic acid phosphodiester bond hydrolysis. Q8GT06. KC609158-KC609170 (O. sativa and wild rice species, partial cds).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0948100 	LOC_Os01g71960.1				GO:0000794 - condensed nuclear chromosome, GO:0000724 - double-strand break repair via homologous recombination, GO:0004519 - endonuclease activity, GO:0003677 - DNA binding, GO:0006312 - mitotic recombination, GO:0007067 - mitosis, GO:0046872 - metal ion binding, GO:0051026 - chiasma formation, GO:0051301 - cell division		
11614	_	Rad50	_				2	homologous recombination (HR)-related gene. GO:0090305:nucleic acid phosphodiester bond hydrolysis.	 Biochemical character	Os02g0497500 	LOC_Os02g29464.1				GO:0004518 - nuclease activity, GO:0006312 - mitotic recombination, GO:0006302 - double-strand break repair, GO:0016233 - telomere capping, GO:0030870 - Mre11 complex, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0008270 - zinc ion binding		
11616	RAD51C	OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3	DNA REPAIR PROTEIN RAD51C	DNA repair protein RAD51C, Radiation sensitive51C, Radiation sensitive 51C	DNA REPAIR PROTEIN RAD51C	Osrad51c, rad51c	1	homologous recombination (HR)-related gene. JN394076. GO:1904975: response to bleomycin.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os01g0578000  	LOC_Os01g39630.2, LOC_Os01g39630.1				GO:0010332 - response to gamma radiation, GO:0045002 - double-strand break repair via single-strand annealing, GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0016444 - somatic cell DNA recombination, GO:0008094 - DNA-dependent ATPase activity, GO:0000724 - double-strand break repair via homologous recombination, GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0007131 - reciprocal meiotic recombination, GO:0007140 - male meiosis, GO:0007143 - female meiosis, GO:0006302 - double-strand break repair	TO:0000161 - radiation response trait	
11617	RAD51D	OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3	DNA REPAIR PROTEIN RAD51D	DNA repair protein RAD51D	DNA REPAIR PROTEIN RAD51D	osrad51d, rad51d	9	homologous recombination (HR)-related gene. KJ472480, KJ472481, KJ472482. TO:0000862: floral organ anatomy and morphology trait. GO:1904975: response to bleomycin.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0104200 	LOC_Os09g01680.3, LOC_Os09g01680.2, LOC_Os09g01680.1				GO:0000723 - telomere maintenance, GO:0022414 - reproductive process, GO:0010332 - response to gamma radiation, GO:0045002 - double-strand break repair via single-strand annealing, GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0006302 - double-strand break repair, GO:0007126 - meiosis	TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000485 - sterility related trait, TO:0000225 - stamen number, TO:0000161 - radiation response trait	
11618	RAD54	OsRAD54, OsRad54	DNA REPAIR PROTEIN RAD54	DNA repair protein RAD54	DNA REPAIR PROTEIN RAD54		2	homologous recombination (HR)-related gene. A4PBL4. AB240577.	 Biochemical character	Os02g0762800 	LOC_Os02g52510.1				GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0051301 - cell division, GO:0000724 - double-strand break repair via homologous recombination, GO:0003677 - DNA binding, GO:0010332 - response to gamma radiation, GO:0007067 - mitosis, GO:0005634 - nucleus		
11619	_	OsRecQl4, RecQl4, OsMed34_1, Med34_1	_	RecQ like protein 4, Mediator 34_1		osrecql4, osrecql4-1, osrecql4-2	4	homologous recombination (HR)-related gene. CAE03209. LOC_Os04g35420.	 Biochemical character	Os04g0433800 	LOC_Os04g35420.1				GO:0006281 - DNA repair, GO:0006260 - DNA replication, GO:0043140 - ATP-dependent 3'-5' DNA helicase activity		
11620	_	DSS1/SEM1, DSS1, SEM1	_				1	homologous recombination (HR)-related gene.	 Biochemical character	Os01g0273000 	LOC_Os01g16640.1						
11621	_	XRCC3, OsXRCC3	_			xrcc3	2	homologous recombination (HR)-related gene. GO:1904975: response to bleomycin 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0562100 	LOC_Os02g35450.1				GO:0008094 - DNA-dependent ATPase activity, GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0003684 - damaged DNA binding, GO:0006281 - DNA repair, GO:0005524 - ATP binding, GO:0006302 - double-strand break repair		
11622	LC1	OsGH3-1, GH3-1, OsGH3.1, GH3.1, OsLC1	LEAF INCLINATION 1	LEAF INCLINATION1		lc1-D	1	Q8LQM5. an IAA-amido synthetase. the counterpart of the Arabidopsis DFL1. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0785400	LOC_Os01g57610.1				GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0016874 - ligase activity, GO:0009734 - auxin mediated signaling pathway, GO:0016132 - brassinosteroid biosynthetic process, GO:0010252 - auxin homeostasis	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle, TO:0002672 - auxin content	
11623	GH3-2	OsGH3-2, OsGH3.2, GH3.2	GH3-2				1	P0C0M2. GU001814. IAA-conjugating enzyme.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0764800	LOC_Os01g55940.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0010279 - indole-3-acetic acid amido synthetase activity	TO:0002672 - auxin content, TO:0000207 - plant height, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle, TO:0000135 - leaf length, TO:0006032 - panicle size, TO:0000145 - internode length, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009049 - inflorescence , PO:0009066 - anther 
11624	GH3-4	OsGH3-4, OsGH3.4, GH3.4	GH3-4				5	Q60EJ6.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0500900	LOC_Os05g42150.1				GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0016874 - ligase activity	TO:0006001 - salt tolerance	PO:0009010 - seed 
11625	GH3-6	OsGH3-6	GH3-6				5	Q60EY1. LOC_Os05g05180.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0143800	LOC_Os05g05180.2, LOC_Os05g05180.1				GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0016874 - ligase activity	TO:0006001 - salt tolerance	
11626	GH3-7	OsGH3-7	GH3-7				6	Q654M1. GO: 0052625:4-aminobenzoate amino acid synthetase activity. GO: 0052628:4-hydroxybenzoate amino acid synthetase activity. GO:0052626: benzoate amino acid synthetase activity. GO:0052627: vanillate amino acid synthetase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0499500	LOC_Os06g30440.2, LOC_Os06g30440.1				GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0018874 - benzoate metabolic process, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0016046 - detection of fungus, GO:0009863 - salicylic acid mediated signaling pathway	TO:0006001 - salt tolerance	
11627	GH3-9	OsGH3-9	GH3-9				7	Q6ZLA3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0576500	LOC_Os07g38890.1				GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0010279 - indole-3-acetic acid amido synthetase activity	TO:0006001 - salt tolerance	
11628	GH3-10	OsGH3-10	GH3-10	indole-3-acetic acid-amido synthetase GH3.10			7	Q6ZLA7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0576100	LOC_Os07g38860.1				GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0010279 - indole-3-acetic acid amido synthetase activity, GO:0016874 - ligase activity, GO:0046688 - response to copper ion	TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity	
11629	GH3-11	OsGH3-11, OsGH3.11, GH3.11	GH3-11				7	P0C0M3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0671500	LOC_Os07g47490.4, LOC_Os07g47490.3, LOC_Os07g47490.2, LOC_Os07g47490.1				GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0009941 - chloroplast envelope, GO:0016874 - ligase activity	TO:0006001 - salt tolerance	
11630	TLD1	OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2	INCREASED NUMBER OF TILLERS, ENLARGED LEAF ANGLES AND DWARFISM 1	increased number of tillers, enlarged leaf angles, and dwarfism 1	INDOLE-3-ACETIC ACID (IAA)-AMIDO SYNTHETASE	tld1-D	11	Q2R3B4. The selective splicing of LOC_Os11g32520 and LOC_Os11g32510 produces two splice variants: TLD1 and TLD2.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os11g0528700	LOC_Os11g32520.1, LOC_Os11g32510.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0010279 - indole-3-acetic acid amido synthetase activity	TO:0006001 - salt tolerance, TO:0000152 - panicle number, TO:0000346 - tiller number	
11631	_	OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO	_	carotenoid isomerase		mhz5, mhz5-1, mhz5-2, mhz5-3, mhz5-4	11	LOC_Os11g36440.	 Biochemical character	Os11g0572700	LOC_Os11g36440.1				GO:0009723 - response to ethylene stimulus, GO:0016117 - carotenoid biosynthetic process, GO:0046608 - carotenoid isomerase activity, GO:0009693 - ethylene biosynthetic process, GO:0009507 - chloroplast, GO:0009873 - ethylene mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling	TO:0000173 - ethylene sensitivity, TO:0002667 - abscisic acid content	PO:0001031 - 4 root elongation stage , PO:0007045 - coleoptile emergence stage 
11632	_	OsPSY, PSY, OsPSY3, PSY3	_	phytoene synthase 3			9	DQ356431. BAF25806. FJ214953. LOC_Os09g38320.	 Biochemical character,  Vegetative organ - Root,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os09g0555500	LOC_Os09g38320.1				GO:0016117 - carotenoid biosynthetic process, GO:0009507 - chloroplast, GO:0009688 - abscisic acid biosynthetic process, GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups	TO:0002667 - abscisic acid content	
11633	_	OsBBX1, OsDBB3c, BBX1, DBB3c	_	B-box-containing protein 1, DOUBLE B-BOX zinc finger gene 3c, DOUBLE B-BOX 3c			1	the counterpart of (A. thaliana) DBB3.	 Tolerance and resistance - Stress tolerance	Os01g0202500	LOC_Os01g10580.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005622 - intracellular, GO:0008270 - zinc ion binding	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0009010 - seed 
11634	_	OsBBX2, BBX2	_	B-box-containing protein 2	_		2	AK241477.	 Tolerance and resistance - Stress tolerance	Os02g0176000	LOC_Os02g07930.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005622 - intracellular, GO:0008270 - zinc ion binding	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0009010 - seed 
11635	_	OsBBX3, OsF, OsCCT05, BBX3, CCT05	_	B-box-containing protein 3, CCT domain-containing gene 5, CCT (CO, CO-LIKE and TOC1) domain protein 5, CCT domain protein 5, CONSTANS-like gene F			2			Os02g0178100	LOC_Os02g08150.1						PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed 
11636	_	OsBBX4, OsSTH, BBX4, STH	_	B-box-containing protein 4			2	CT830238, AB001885. orthologous to A. thaliana STH. Zinc-finger Protein. HQ858805. ORPHAN transcription factor in Yilmaz et al. 2009.		Os02g0606200	LOC_Os02g39360.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0009049 - inflorescence , PO:0009066 - anther , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed 
11637	_	OsBBX6, BBX6	_	B-box-containing protein 6			2	CT832305. HQ858819. ORPHANS transcription factor in Yilmaz et al. 2009.		Os02g0646200	LOC_Os02g43170.2, LOC_Os02g43170.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system 
11639	_	OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, BBX8, CCT09, Ghd2	_	"B-box-containing protein 8, CCT domain-containing gene 9, CCT (CO, CO-LIKE and TOC1) domain protein 9, CCT domain protein 9, \"Grain number, plant height, and heading date2\", CONSTANS-like 1 protein"		ghd2	2	a CONSTANS-like gene. GO:1900055: regulation of leaf senescence.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0731700	LOC_Os02g49880.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010150 - leaf senescence	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000249 - leaf senescence	PO:0007616 - flowering stage , PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
11641	_	OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9	_	B-box-containing protein 10, CCT domain-containing gene 14, CCT (CO, CO-LIKE and TOC1) domain protein 14, CCT domain protein 14, CONSTANS-Like 10, CONSTANS-like 9			3	OsCOL9 in Liu et al. 2016.	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os03g0711100	LOC_Os03g50310.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0007623 - circadian rhythm, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009873 - ethylene mediated signaling pathway, GO:0050832 - defense response to fungus	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000074 - blast disease, TO:0000173 - ethylene sensitivity, TO:0000447 - filled grain number	PO:0009066 - anther , PO:0009049 - inflorescence , PO:0007616 - flowering stage , PO:0009006 - shoot system , PO:0009010 - seed , PO:0004006 - mesophyll cell , PO:0025034 - leaf 
11642	_	OsBBX11, OsSTO, BBX11, STO	_	B-box-containing protein 11			4	AB001883. orthologous to A. thaliana STO. Zinc-finger Protein.		Os04g0493000	LOC_Os04g41560.4, LOC_Os04g41560.2				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0009066 - anther , PO:0009049 - inflorescence , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed 
11643	_	OsBBX12, OsC, OsCCT16, BBX12, CCT16	_	B-box-containing protein 12, CCT domain-containing gene 16, CCT (CO, CO-LIKE and TOC1) domain protein 16, CCT domain protein 16, CONSTANS-like protein, CONSTANS-like gene C			4	AL606627.	 Tolerance and resistance - Stress tolerance	Os04g0497700	LOC_Os04g42020.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005622 - intracellular, GO:0008270 - zinc ion binding	TO:0000224 - iron sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0009010 - seed 
11644	_	OsBBX13, BBX13	_	B-box-containing protein 13			4	CT830169. HQ858844. AP2-EREBP transcription factor.	 Other	Os04g0540200	LOC_Os04g45690.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system 
11645	_	OsBBX14, BBX14, OsDBB3b, DBB3b	_	B-box-containing protein 14, DOUBLE B-BOX zinc finger gene 3b, DOUBLE B-BOX 3b, B-box protein 14			5	a homolog of Arabidopsis thaliana B-box domain protein 22 (AtBBX22).	 Reproductive organ - Heading date,  Coloration - Anthocyanin,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance	Os05g0204600	LOC_Os05g11510.1				GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0031542 - positive regulation of anthocyanin biosynthetic process, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0007623 - circadian rhythm	TO:0000224 - iron sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000486 - seed color, TO:0000071 - anthocyanin content, TO:0000137 - days to heading	PO:0025034 - leaf , PO:0020141 - stem node , PO:0009006 - shoot system , PO:0009010 - seed , PO:0007632 - seed maturation stage , PO:0020103 - flag leaf 
11646	_	OsBBX15, OsCCT19, OsS, OsSTA162, BBX15, CCT19, STA162	_	B-box-containing protein 15, CCT domain-containing gene 19, CCT (CO, CO-LIKE and TOC1) domain protein 19, CCT domain protein 19			6	a mature anther-preferentially expressed gene.	 Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0103000	LOC_Os06g01340.1				GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading	PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009066 - anther 
11647	_	OsBBX16, OsDBB3a, BBX16, DBB3a	_	B-box-containing protein 16, DOUBLE B-BOX zinc finger gene 3a, DOUBLE B-BOX 3a			6	AB001886. Zinc-finger Protein.	 Tolerance and resistance - Stress tolerance	Os06g0152200	LOC_Os06g05890.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005622 - intracellular, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000224 - iron sensitivity	PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0020141 - stem node , PO:0009006 - shoot system , PO:0009089 - endosperm , PO:0009010 - seed 
11648	_	OsBBX17, BBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16	_	B-box-containing protein 17, CCT domain-containing gene 20, CCT (CO, CO-LIKE and TOC1) domain protein 20, CCT domain protein 20, CONSTANS-like protein 16		oscol16	6	GO:2000028: regulation of photoperiodism, flowering. an Arabidopsis COL16 homolog.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os06g0264200	LOC_Os06g15330.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000207 - plant height, TO:0000396 - grain yield, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000224 - iron sensitivity	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009006 - shoot system 
11649	_	OsBBX19, BBX19, OsM, DTH2, qDTH-2, OsCCT22, CCT22	_	B-box-containing protein 19, Days to heading on chromosome 2, CCT domain-containing gene 22, CCT (CO, CO-LIKE and TOC1) domain protein 22, CCT domain protein 22		DTH2-a, DTH2-i	6	CT833045. 	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os06g0298200	LOC_Os06g19444.2, LOC_Os06g19444.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed 
11650	_	OsBBX20, OsE, OsCCT23, BBX20, CCT23	_	B-box-containing protein 20, CCT domain-containing gene 23, CCT (CO, CO-LIKE and TOC1) domain protein 23, CCT domain protein 23, CONSTANS-like gene E			6	AU222658. CT837522.		Os06g0654900	LOC_Os06g44450.1				GO:0005634 - nucleus		PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009010 - seed 
11651	_	OsBBX21, BBX21	_	B-box-containing protein 21			6		 Tolerance and resistance - Stress tolerance	Os06g0661200	LOC_Os06g45040.1				GO:0046686 - response to cadmium ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0020141 - stem node 
11652	_	OsBBX22, BBX22	_	B-box-containing protein 22			6	CT833308, CT831615, AB001884. Zinc-finger Protein.		Os06g0713000	LOC_Os06g49880.2, LOC_Os06g49880.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed 
11653	_	OsBBX23, OsCCT27, BBX23, CCT27, OsR, OsCOL13, COL13	_	B-box-containing protein 23, CCT domain-containing gene 27, CCT (CO, CO-LIKE and TOC1) domain protein 27, CCT domain protein 27, CONSTANS-like 13, CO-like 13		oscol13	7		 Reproductive organ - Heading date	Os07g0667300	LOC_Os07g47140.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0032922 - circadian regulation of gene expression, GO:2000028 - regulation of photoperiodism, flowering, GO:0016563 - transcription activator activity	TO:0002616 - flowering time	PO:0007616 - flowering stage , PO:0025034 - leaf 
11654	_	OsBBX24, BBX24	_	B-box-containing protein 24			8		 Tolerance and resistance - Stress tolerance	Os08g0178800	LOC_Os08g08120.3, LOC_Os08g08120.2, LOC_Os08g08120.1				GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0020141 - stem node , PO:0009006 - shoot system , PO:0009010 - seed 
11655	_	OsBBX25, OsG, OsCCT29, BBX25, CCT29	_	B-box-containing protein 25, CCT domain-containing gene 29, CCT (CO, CO-LIKE and TOC1) domain protein 29, CCT domain protein 29, CONSTANS-like gene G			8	CT833687.		Os08g0249000	LOC_Os08g15050.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding		PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system 
11656	_	OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, COL15, OsCOL15/OsBBX26, Hd1-3	_	B-box-containing protein 26, CCT domain-containing gene 30, CCT (CO, CO-LIKE and TOC1) domain protein 30, CCT domain protein 30, CONSTANS-like protein 15, CONSTANS-like transcription factor 15		oscol15	8	rice ortholog of AtCOL15.	 Reproductive organ - Heading date	Os08g0536300	LOC_Os08g42440.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0007623 - circadian rhythm	TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system 
11658	_	OsBBX28, OsCCT32, OsQ, BBX28, CCT32	_	B-box-containing protein 28, CCT domain-containing gene 32, CCT (CO, CO-LIKE and TOC1) domain protein 32, CCT domain protein 32			9			Os09g0509700	LOC_Os09g33550.1						PO:0007616 - flowering stage , PO:0025034 - leaf 
11659	_	OsBBX29, OsDBB1, BBX29, DBB1	_	B-box-containing protein 29, DOUBLE B-BOX zinc finger gene 1, DOUBLE B-BOX 1			9	CT828272.		Os09g0527900	LOC_Os09g35880.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009006 - shoot system 
11660	_	OsBBX30, BBX30	_	B-box-containing protein 30			12			Os12g0209200	LOC_Os12g10660.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system 
11661	_	OsDVR, DVR	_	"Divinyl reductase, \"3, 8-divinyl protochlorophyllide a 8-vinyl reductase\""		824ys	3	LOC_Os03g22780. GU733918. ADE43128. The mutant 824ys exhibited a yellow-green leaf phenotype, reduced Chl level, arrested chloroplast development, and retarded growth rate. The phenotype of the 824ys mutant was caused by a recessive mutation in a nuclear gene OsDVR  on the short arm of rice chromosome 3.	 Biochemical character,  Coloration - Chlorophyll	Os03g0351200	LOC_Os03g22780.1				GO:0009941 - chloroplast envelope, GO:0000166 - nucleotide binding, GO:0051744 - 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity, GO:0016020 - membrane		
11662	_	OsSRO1c, SRO1c	_	SRO protein 1c, SIMILAR to RCD1 c		ossro1c-1, ossro1c-2	3	LOC_Os03g12820. a rice homologue of SRO (similar to RCD one). GO:0090333: regulation of stomatal closure. TO:0020097: stomatal opening. 	 Tolerance and resistance - Stress tolerance	Os03g0230300	LOC_Os03g12820.2, LOC_Os03g12820.1				GO:0006979 - response to oxidative stress, GO:0010119 - regulation of stomatal movement, GO:0009414 - response to water deprivation, GO:0003950 - NAD+ ADP-ribosyltransferase activity	TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance, TO:0000605 - hydrogen peroxide content, TO:0002657 - oxidative stress	PO:0000293 - guard cell 
11663	TWI1	OsSRO1a, SRO1a, OsTWI1	TWISTED-LEAF1	SRO protein 1a, SIMILAR to RCD1 a, TWISTED-LEAF 1		twi1, wi1-1, twi1-2	10	a rice homologue of SRO (similar to RCD one). LOC_Os10g42710. TO:0000748: leaf morphology trait. a poly(ADP-ribose) polymerase (PARP) domain protein.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os10g0577800 	LOC_Os10g42710.7, LOC_Os10g42710.6, LOC_Os10g42710.5, LOC_Os10g42710.4, LOC_Os10g42710.3, LOC_Os10g42710.2, LOC_Os10g42710.1				GO:0048366 - leaf development, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0006979 - response to oxidative stress, GO:0009269 - response to desiccation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0051595 - response to methylglyoxal, GO:0003950 - NAD+ ADP-ribosyltransferase activity	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress	PO:0001050 - leaf development stage 
11664	_	OsSRO1b, SRO1b	_	SRO protein 1b, SIMILAR to RCD1 b			3	a rice homologue of SRO (similar to RCD one).									
11665	_	OsSRO1d, SRO1d	_	SRO protein 1d, SIMILAR to RCD1 d			6	a rice homologue of SRO (similar to RCD one).									
11666	_	OsSRO1e, SRO1e	_	SRO protein 1e, SIMILAR to RCD1 a			4	a rice homologue of SRO (similar to RCD one).									
11667	_	Oschib1, PR-8, PR8, OsPR8	_	pathogenesis-related protein 8, Chitinase 1			10	class III chitinase. AF296279.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0416500	LOC_Os10g28080.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
11668	_	Oschib2	_				10	AF229187. chitinase.	 Biochemical character	Os10g0416800	LOC_Os10g28120.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
11669	_	OsSAG12	_	Senescence-associated Gene12			9		 Biochemical character	Os09g0497500	LOC_Os09g32230.1				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
11670	_	OsSAG13	_	Senescence-associated Gene13			3		 Biochemical character	Os03g0269100	LOC_Os03g16230.2, LOC_Os03g16230.1				GO:0055114 - oxidation reduction, GO:0016491 - oxidoreductase activity, GO:0000166 - nucleotide binding		
11671	_	HSR203J	_	Hypersensitive-related protein 203J			5		 Biochemical character	Os05g0410200	LOC_Os05g33940.1				GO:0016787 - hydrolase activity		
11672	_	HSR201	_	Hypersensitive-related protein 201, spermidine hydroxycinnamoyl transferase			12	LOC_Os12g27254.	 Biochemical character	Os12g0458100	LOC_Os12g27254.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0008216 - spermidine metabolic process		
11673	_	osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2	_	sirtuin 1			4	LOC_Os04g20270. AAD42226, B8ARK7. AF159133. SIR2-type histone deacetylase class IV. Transcriptional silencer. Similar to yeast SIR2 silencing regulator. a sirtuin-like gene. GO:2000882 negative regulation of starch catabolic process. GO:1900056: negative regulation of leaf senescence.	 Biochemical character,  Vegetative organ - Leaf,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os04g0271000	LOC_Os04g20270.2, LOC_Os04g20270.1				GO:0034355 - NAD salvage, GO:0035067 - negative regulation of histone acetylation, GO:0046872 - metal ion binding, GO:0048316 - seed development, GO:0033552 - response to vitamin B3, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0046169 - methanol biosynthetic process, GO:0010150 - leaf senescence, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0080134 - regulation of response to stress, GO:0045820 - negative regulation of glycolysis, GO:0005634 - nucleus, GO:0005983 - starch catabolic process, GO:0010581 - regulation of starch biosynthetic process, GO:0016787 - hydrolase activity, GO:0017136 - NAD-dependent histone deacetylase activity, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0070403 - NAD binding	TO:0000653 - seed development trait, TO:0000180 - spikelet fertility, TO:0000696 - starch content, TO:0000266 - chalky endosperm, TO:0002658 - starch grain synthesis, TO:0000269 - 100-seed weight, TO:0000249 - leaf senescence, TO:0002668 - jasmonic acid content, TO:0000723 - microsporocyte development trait	PO:0001170 - seed development stage 
11674	_	osHDA702	_					AAK01712. RPD3/HDA1-like histone deacetylase. GO:0097372: NAD-dependent histone deacetylase activity (H3-K18 specific).	 Biochemical character						GO:0070932 - histone H3 deacetylation, GO:0070933 - histone H4 deacetylation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific), GO:0046969 - NAD-dependent histone deacetylase activity (H3-K9 specific), GO:0046970 - NAD-dependent histone deacetylase activity (H4-K16 specific), GO:0005634 - nucleus		
11675	_	osSRT702, OsSRT2	_					SIR2-type histone deacetylase class II.									
11676	_	APIP6	_	AvrPiz-t Interacting Protein 6			5		 Tolerance and resistance - Disease resistance	Os05g0154600	LOC_Os05g06270.2, LOC_Os05g06270.1				GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
11677	_	OsPPKL1, PPKL1, qGL3, OsPP54, PP54, GL3.1	_	protein phosphatase with Kelch-like repeat domain 1, grain length 3, Protein phosphatase 54		osppkl1, qgl3	3	LOC_Os03g44500.	 Biochemical character,  Seed - Morphological traits - Grain shape	Os03g0646900	LOC_Os03g44500.1				GO:0005506 - iron ion binding, GO:0030145 - manganese ion binding, GO:0005886 - plasma membrane, GO:0004721 - phosphoprotein phosphatase activity, GO:0005829 - cytosol		
11678	_	OsPPKL2, OsPP73	_	protein phosphatase with Kelch-like repeat domain 2, Protein phosphatase 73		osppkl2	5	Q60EX6. LOC_Os05g05240.	 Biochemical character	Os05g0144400	LOC_Os05g05240.2, LOC_Os05g05240.1				GO:0005506 - iron ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005634 - nucleus, GO:0030145 - manganese ion binding		
11679	_	OsPPKL3, OsPP132	_	protein phosphatase with Kelch-like repeat domain 3, Protein phosphatase 132		osppkl3	12	Q2QM47. LOC_Os12g42310.	 Biochemical character	Os12g0617900	LOC_Os12g42310.1				GO:0005829 - cytosol, GO:0030145 - manganese ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005506 - iron ion binding, GO:0005886 - plasma membrane, GO:0005634 - nucleus		
11680	_	OsMYB55, OsMYB-2	_	R2R3-MYB Transcription Factor 55, R2R3-MYB Transcription Factor OsMYB55			5	R2R3-MYB.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0553400	LOC_Os05g48010.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
11681	_	GAT1	_	class I glutamine amidotransferase, glutamine amidotransferase 1			2	BAD08105.		Os02g0708100	LOC_Os02g47850.3, LOC_Os02g47850.2, LOC_Os02g47850.1				GO:0016036 - cellular response to phosphate starvation, GO:0006543 - glutamine catabolic process, GO:0070409 - carbamoyl phosphate biosynthetic process, GO:0009570 - chloroplast stroma		
11682	_	OsMYB8	_	myb transcription factor 8, transcription factor MYB8			1	R2R3-MYB. AY459338, AB010836.	 Other	Os01g0637800	LOC_Os01g45090.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
11683	MST8	OsMST8, OSMST8	MONOSACCHARIDE TRANSPORTER 8	Monosaccharide transporter 8	MONOSACCHARIDE TRANSPORTER 8		1	AY822464.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os01g0567500	LOC_Os01g38670.1				GO:0009624 - response to nematode, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0015749 - monosaccharide transport, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0005634 - nucleus, GO:0008506 - sucrose:hydrogen symporter activity, GO:0009555 - pollen development, GO:0005773 - vacuole	TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
11684	MST7	OsMST7, OSMST7	MONOSACCHARIDE TRANSPORTER 7	Monosaccharide transporter 7	MONOSACCHARIDE TRANSPORTER 7		1		 Biochemical character	Os01g0567600	LOC_Os01g38680.1				GO:0005773 - vacuole, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0008506 - sucrose:hydrogen symporter activity, GO:0009624 - response to nematode, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0015749 - monosaccharide transport, GO:0005634 - nucleus		
11685	_	OSINV4, OsINV4, INV4, OsCIN3	_	cell wall invertase 4, cell-wall invertase 3			4	Q0JDC6. AY220486. AY578160. AY575550. AY342320. Q01IS8. GO:0071836: nectar secretion. GO:0080167: response to karrikin.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os04g0413200	LOC_Os04g33720.1				GO:0005618 - cell wall, GO:0004575 - sucrose alpha-glucosidase activity, GO:0005982 - starch metabolic process, GO:0005773 - vacuole, GO:0009611 - response to wounding, GO:0031219 - levanase activity, GO:0048046 - apoplast, GO:0051670 - inulinase activity		
11686	_	OSINV1, OsINV1, INV1, OsCIN7, OsCIN8	_	cell wall invertase 1, cell-wall invertase 7, cell-wall invertase 8			9	AF155121, C72341. AY578164. AY575555. A2YZ01, Q0J360. GO:0071836: nectar secretion. GO:0080167: response to karrikin. OsCIN8 in Ji et al. 2005.	 Biochemical character	Os09g0255000	LOC_Os09g08072.1				GO:0005618 - cell wall, GO:0051670 - inulinase activity, GO:0004575 - sucrose alpha-glucosidase activity, GO:0009611 - response to wounding, GO:0048046 - apoplast, GO:0005982 - starch metabolic process, GO:0005773 - vacuole, GO:0031219 - levanase activity		
11687	_	OSINV2, OsINV2, OsVIN1	_	vacuolar acid invertase 2, vacuolar invertase 1			4	AF276703, C71989. AU101080. AY575556. OsVIN1 in Ji et al. 2005.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0535600	LOC_Os04g45290.2, LOC_Os04g45290.1				GO:0005975 - carbohydrate metabolic process, GO:0009505 - plant-type cell wall, GO:0004575 - sucrose alpha-glucosidase activity, GO:0005773 - vacuole	TO:0000432 - temperature response trait	
11688	_	OSINV3, OsINV3, INV3, OsVIN2, VIN2, VINV	_	invertase 3, fructosyl transferase, vacuolar invertase 2			2	LOC_Os02g01590. AF276704, C25279. AY575557. OsVIN2 in Ji et al. 2005.	 Biochemical character	Os02g0106100	LOC_Os02g01590.2, LOC_Os02g01590.1				GO:0005975 - carbohydrate metabolic process, GO:0009505 - plant-type cell wall, GO:0004575 - sucrose alpha-glucosidase activity, GO:0005773 - vacuole		
11689	CIN1	OSCIN1, OsCIN1	CELL-WALL INVERTASE 1	cell-wall invertase 1, Cell wall-bound invertase 1	CELL-WALL INVERTASE 1		2	cell wall invertase. AB073749. AY578158. Q0E0P0. GO:0071836: nectar secretion. GO:0080167: response to karrikin. GU797950-GU797999 (O.sativa and other wild rice species). AY575548. LOC_Os02g33110.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0534400	LOC_Os02g33110.3, LOC_Os02g33110.2, LOC_Os02g33110.1				GO:0005982 - starch metabolic process, GO:0048046 - apoplast, GO:0031219 - levanase activity, GO:0009611 - response to wounding, GO:0004575 - sucrose alpha-glucosidase activity, GO:0051670 - inulinase activity, GO:0005618 - cell wall, GO:0005773 - vacuole	TO:0000074 - blast disease	
11690	_	OsGT1	_	GLYCOSYLTRANSFERASE1		osgt1, osgt1-1, osgt1-2	1		 Biochemical character,  Reproductive organ	Os01g0262600	LOC_Os01g15780.2, LOC_Os01g15780.1				GO:0005794 - Golgi apparatus, GO:0009058 - biosynthetic process		
11691	MIR319A	OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p	MICRORNA319A	rice microRNA319a, MicroRNA319a			1	miRBASE accession: MI0001098. predicted target(s): metacaspase. AY551257. LM382867 LM379311. TO:0000820: leaf vein morphology trait.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Other	Os01g0659400	LOC_Os01g46984.1				GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0009965 - leaf morphogenesis, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0009409 - response to cold	TO:0000370 - leaf width, TO:0000303 - cold tolerance	
11692	_	OsPCF5, PCF5	_	PROLIFERATING CELL FACTOR 5			11	a putative miR319 target gene. proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071805. Q8LT07. LOC_Os01g11550.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0213800	LOC_Os01g11550.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0007275 - multicellular organismal development, GO:0005652 - nuclear lamina	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11693	_	OsPCF6, PCF6	_	PROLIFERATING CELL FACTOR 6			3	a putative miR319 target gene. proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071806. Q10CE8. LOC_Os03g57190.	 Other	Os03g0785800	LOC_Os03g57190.1				GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11694	_	OsPCF7, PCF7	_	PROLIFERATING CELL FACTOR 7			1	a putative miR319 target gene. proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071807. Q8LT05. LOC_Os01g55100.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0755500	LOC_Os01g55100.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0007275 - multicellular organismal development, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11695	_	OsPCF8, PCF8	_	PROLIFERATING CELL FACTOR 8			12	a putative miR319 target gene. proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071808. Q2QM59. LOC_Os12g42190.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0616400	LOC_Os12g42190.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent	TO:0000303 - cold tolerance	
11696	_	OsTCP14	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 14				a putative miR319 target gene. a plant-specifictranscription factor.	 Other								
11697	_	PCF1, OsPCF1	_	PROLIFERATING CELL FACTOR 1, PROMOTER BINDING FACTOR1			4	proliferating cell nuclear antigen (PCNA) promoter binding factor. D87260. O23875. LOC_Os04g11830.	 Other	Os04g0194600	LOC_Os04g11830.1				GO:0003677 - DNA binding, GO:0007275 - multicellular organismal development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
11698	_	PCF2, OsPCF2	_	PROLIFERATING CELL FACTOR 2, PROMOTER BINDING FACTOR2			8	proliferating cell nuclear antigen (PCNA) promoter binding factor. D87261. Q6ZBH6. LOC_Os08g43160.	 Other	Os08g0544800	LOC_Os08g43160.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development		
11699	_	PCF3, OsPCF3	_	PROLIFERATING CELL FACTOR 3			11	proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071804. Q53PH2. LOC_Os11g07460.	 Tolerance and resistance - Stress tolerance,  Other	Os11g0175700	LOC_Os11g07460.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11700	GH9A3	OsGH9A3	GLYCOSIDE HYDROLASE 9A3	glycoside hydrolase OsGH9A3, glycoside hydrolase 9A3	GLYCOSIDE HYDROLASE 9A3		3	Q84R49.	 Biochemical character	Os03g0736300	LOC_Os03g52630.2, LOC_Os03g52630.1				GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process, GO:0016021 - integral to membrane		
11701	GH9B1	OsGH9B1	GLYCOSIDE HYDROLASE 9B1	glycoside hydrolase OsGH9B1, glycoside hydrolase 9B1	GLYCOSIDE HYDROLASE 9B1		2	Q6Z2J3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0733300	LOC_Os02g50040.1				GO:0010215 - cellulose microfibril organization, GO:0005576 - extracellular region, GO:0008810 - cellulase activity, GO:0009507 - chloroplast, GO:0030245 - cellulose catabolic process, GO:0042547 - cell wall modification during multidimensional cell growth, GO:0009827 - plant-type cell wall modification	TO:0000068 - lodging incidence	
11702	GH9B2	OsGH9B2	GLYCOSIDE HYDROLASE 9B2	glycoside hydrolase OsGH9B2, glycoside hydrolase 9B2	GLYCOSIDE HYDROLASE 9B2		1	Q8LQ92.	 Biochemical character	Os01g0312800	LOC_Os01g21070.1				GO:0005576 - extracellular region, GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process		
11703	GH9B3	OsGH9B3	GLYCOSIDE HYDROLASE 9B3	glycoside hydrolase OsGH9B3, glycoside hydrolase 9B3	GLYCOSIDE HYDROLASE 9B3		6	Q652F9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0256900	LOC_Os06g14540.1				GO:0010215 - cellulose microfibril organization, GO:0042547 - cell wall modification during multidimensional cell growth, GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0008810 - cellulase activity, GO:0009507 - chloroplast, GO:0009827 - plant-type cell wall modification	TO:0000068 - lodging incidence	
11704	GH9B4	OsGH9B4	GLYCOSIDE HYDROLASE 9B4	glycoside hydrolase OsGH9B4, glycoside hydrolase 9B4	GLYCOSIDE HYDROLASE 9B4		4	Q7XTH4.	 Biochemical character	Os04g0443300	LOC_Os04g36610.1				GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0005886 - plasma membrane, GO:0008810 - cellulase activity, GO:0009505 - plant-type cell wall		
11705	GH9B5	OsGH9B5	_	glycoside hydrolase OsGH9B5, glycoside hydrolase 9B5	_		9	Q69SG5.	 Biochemical character	Os09g0533900	LOC_Os09g36350.2, LOC_Os09g36350.1				GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0005886 - plasma membrane, GO:0008810 - cellulase activity		
11706	GH9B6	OsGH9B6	GLYCOSIDE HYDROLASE 9B6	glycoside hydrolase OsGH9B6, glycoside hydrolase 9B6	GLYCOSIDE HYDROLASE 9B6		6	Q5Z9P8.	 Biochemical character,  Reproductive organ	Os06g0715300	LOC_Os06g50140.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity		PO:0000084 - plant sperm cell 
11707	GH9B7	OsGH9B7	GLYCOSIDE HYDROLASE 9B7	glycoside hydrolase OsGH9B7, glycoside hydrolase 9B7	GLYCOSIDE HYDROLASE 9B7		2	Q67UW5.	 Biochemical character	Os02g0151300	LOC_Os02g05744.1				GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity, GO:0005576 - extracellular region		
11708	GH9B8	OsGH9B8	GLYCOSIDE HYDROLASE 9B8	glycoside hydrolase OsGH9B8, glycoside hydrolase 9B8	GLYCOSIDE HYDROLASE 9B8		2	Q6Z5P2.	 Biochemical character	Os02g0738600	LOC_Os02g50490.1				GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0008810 - cellulase activity		
11709	GH9B9	OsGH9B9	GLYCOSIDE HYDROLASE 9B9	glycoside hydrolase OsGH9B9, glycoside hydrolase 9B9	GLYCOSIDE HYDROLASE 9B9		6	Q654U4.	 Biochemical character	Os06g0247900	LOC_Os06g13830.1				GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0008810 - cellulase activity		
11710	GH9B10	OsGH9B10	GLYCOSIDE HYDROLASE 9B10	glycoside hydrolase OsGH9B10, glycoside hydrolase 9B10	GLYCOSIDE HYDROLASE 9B10		8	Q84Q51.	 Biochemical character	Os08g0425300	LOC_Os08g32940.1				GO:0008810 - cellulase activity, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process		
11711	GH9B11	OsGH9B11	GLYCOSIDE HYDROLASE 9B11	glycoside hydrolase OsGH9B11, glycoside hydrolase 9B11	GLYCOSIDE HYDROLASE 9B11		9	Q6H3Z9.	 Biochemical character	Os09g0394300	LOC_Os09g23084.1				GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity, GO:0005576 - extracellular region		
11712	GH9B12	OsGH9B12	GLYCOSIDE HYDROLASE 9B12	glycoside hydrolase OsGH9B12, glycoside hydrolase 9B12	GLYCOSIDE HYDROLASE 9B12		5	P0C1U5.	 Biochemical character	Os05g0129200	LOC_Os05g03840.1				GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region		
11713	GH9B13	OsGH9B13	GLYCOSIDE HYDROLASE 9B13	glycoside hydrolase OsGH9B13, glycoside hydrolase 9B13	GLYCOSIDE HYDROLASE 9B13		8	Q6ZA06.	 Biochemical character	Os08g0387400	LOC_Os08g29770.1				GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity		
11714	GH9B14	OsGH9B14	GLYCOSIDE HYDROLASE 9B14	glycoside hydrolase OsGH9B14, glycoside hydrolase 9B14	GLYCOSIDE HYDROLASE 9B14		9	Q69NF5.	 Biochemical character	Os09g0530200	LOC_Os09g36060.1				GO:0008810 - cellulase activity, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process		
11715	_	OsGH9B15, OsGLU14, GH9B15, GLU14	_	glycoside hydrolase OsGH9B15, glycoside hydrolase 9B15, endoglucanase 14	_		2	Q6Z715.	 Biochemical character	Os02g0123700	LOC_Os02g03120.1				GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0008810 - cellulase activity		
11716	GH9B16	OsGH9B16	GLYCOSIDE HYDROLASE 9B16	glycoside hydrolase OsGH9B16, glycoside hydrolase 9B16	GLYCOSIDE HYDROLASE 9B16		8	Q6YXT7. LOC_Os08g02220.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0114200	LOC_Os08g02220.1				GO:0008810 - cellulase activity, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process, GO:0009827 - plant-type cell wall modification	TO:0000068 - lodging incidence	
11717	GH9B17	OsGH9B17	GLYCOSIDE HYDROLASE 9B17	glycoside hydrolase OsGH9B17, glycoside hydrolase 9B17	GLYCOSIDE HYDROLASE 9B17		12	LOC_Os12g24040.	 Biochemical character	Os12g0428200/Os12g0428150					GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
11718	GH9B18	OsGH9B18	GLYCOSIDE HYDROLASE 9B18	glycoside hydrolase OsGH9B18, glycoside hydrolase 9B18	GLYCOSIDE HYDROLASE 9B18		2	Q6K7G9.	 Biochemical character	Os02g0778600	LOC_Os02g53820.2, LOC_Os02g53820.1				GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0008810 - cellulase activity		
11719	GH9C1	OsGH9C1	GLYCOSIDE HYDROLASE 9C1	glycoside hydrolase OsGH9C1, glycoside hydrolase 9C1	GLYCOSIDE HYDROLASE 9C1		4	Q0J930.	 Biochemical character	Os04g0674800	LOC_Os04g57860.1				GO:0005576 - extracellular region, GO:0008810 - cellulase activity, GO:0030246 - carbohydrate binding, GO:0030245 - cellulose catabolic process		
11720	GH9C2	OsGH9C2	GLYCOSIDE HYDROLASE 9C2	glycoside hydrolase OsGH9C2, glycoside hydrolase 9C2	GLYCOSIDE HYDROLASE 9C2		1	Q5NAT8.	 Biochemical character	Os01g0219600	LOC_Os01g12030.1				GO:0005576 - extracellular region, GO:0030246 - carbohydrate binding, GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity		
11722	GH9C4	OsGH9C4	GLYCOSIDE HYDROLASE 9C4	glycoside hydrolase OsGH9C4, glycoside hydrolase 9C4	GLYCOSIDE HYDROLASE 9C4		5	Q6L4I2.	 Biochemical character	Os05g0212300	LOC_Os05g12150.1				GO:0005576 - extracellular region, GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process, GO:0030246 - carbohydrate binding		
11723	_	JMJ703	_	Jumonji 703		jmj703	5	JmjC domain containing protein. LOC_Os05g10770. Q53WJ1. H3K4 demethylase.	 Reproductive organ - panicle	Os05g0196500	LOC_Os05g10770.1				GO:0032453 - histone demethylase activity (H3-K4 specific), GO:0040010 - positive regulation of growth rate, GO:0034720 - histone H3-K4 demethylation, GO:0008198 - ferrous iron binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0010229 - inflorescence development, GO:0005634 - nucleus, GO:0051213 - dioxygenase activity, GO:0045814 - negative regulation of gene expression, epigenetic	TO:0000621 - inflorescence development trait, TO:0006032 - panicle size	PO:0001083 - inflorescence development stage 
11724	LINE1	LINE1	RETROTRANSPOSON LINE1	non-LTR retrotransposable element LINE1					 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
11725	_	OsCOI2	_	coronatine insensitive 2			3			Os03g0265500	LOC_Os03g15880.5, LOC_Os03g15880.4, LOC_Os03g15880.3, LOC_Os03g15880.2, LOC_Os03g15880.1				GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0009641 - shade avoidance, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009909 - regulation of flower development, GO:0010118 - stomatal movement, GO:0010218 - response to far red light, GO:0009625 - response to insect, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0019005 - SCF ubiquitin ligase complex, GO:0031348 - negative regulation of defense response		
11727	_	OsCLP, CLP	_	chitinase-like protein		osclp	1	BAB89707. TO:0020108: root cortical cell length. TO:0006047: calcium concentration. TO:0000911: trichome anatomy and morphology trait.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Seed - Morphological traits	Os01g0937050	LOC_Os01g71080.1				GO:0006508 - proteolysis, GO:0048046 - apoplast, GO:0048364 - root development, GO:0019722 - calcium-mediated signaling, GO:0045493 - xylan catabolic process, GO:0004190 - aspartic-type endopeptidase activity	TO:0000227 - root length, TO:0000640 - total root number, TO:0000656 - root development trait, TO:0000576 - stem length, TO:0006032 - panicle size, TO:0000484 - seed shape, TO:0000304 - seed thickness, TO:0000472 - vascular bundle number, TO:0000207 - plant height, TO:0000181 - seed weight, TO:0002655 - starch grain size, TO:0000370 - leaf width, TO:0000145 - internode length, TO:0006036 - stem elongation	PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage , PO:0007033 - whole plant development stage , PO:0007089 - stem elongation stage , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009005 - root , PO:0009047 - stem , PO:0009046 - flower , PO:0020104 - leaf sheath 
11728	_	OsXIP, XIP	_	xylanase inhibitor protein			5	LOC_Os05g15880. glycosyl hydrolase. One of the two candidate genes within the grain weight major QTL region OsqGW5.1 (Daware et al. 2016).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0247800	LOC_Os05g15880.1				GO:0003824 - catalytic activity, GO:0080027 - response to herbivore, GO:0005975 - carbohydrate metabolic process, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000054 - animal damage resistance, TO:0000424 - brown planthopper resistance	PO:0009010 - seed 
11729	_	riceXIP	_	xylanase inhibitor protein			11	BAA77780. Q53NL5.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0701100	LOC_Os11g47520.1				GO:0006952 - defense response, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
11730	RIXI 	C10701	_	xylanase inhibitor protein, rice xylanase inhibitor			11	D55712. BAA23810. Q7GCM7. class III chitinase.	 Tolerance and resistance - Disease resistance	Os11g0701800	LOC_Os11g47580.1				GO:0005576 - extracellular region, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process	TO:0000074 - blast disease	
11731	DST	OsDST	DROUGHT AND SALT TOLERANCE	zinc finger transcription factor DST, Drought and Salt Tolerance gene		reg1, dst	3	LOC_Os03g57240. GQ178286. a negative regulator of grain number. a C2H2 zinc nger transcription factor. GO:1901001: negative regulation of response to salt stress. GO:0080148: negative regulation of response to water deprivation. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0786400	LOC_Os03g57240.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005622 - intracellular, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance, TO:0000136 - relative water content, TO:0000276 - drought tolerance, TO:0006002 - proline content, TO:0000605 - hydrogen peroxide content, TO:0000608 - sodium content, TO:0000609 - potassium content, TO:0002759 - grain number	
11733	AT1	OsAT1, OsAt1	ACYLTRANSFERASE 1	acyltransferase 1	ACYLTRANSFERASE 1		1	LOC_Os01g42880.	 Biochemical character	Os01g0615300	LOC_Os01g42880.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11734	AT2	OsAT2, OsAt2	ACYLTRANSFERASE 2	acyltransferase 2	ACYLTRANSFERASE 2		1	LOC_Os01g42870.	 Biochemical character	Os01g0615200	LOC_Os01g42870.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11735	AT3	OsAT3, OsAt3	ACYLTRANSFERASE 3	acyltransferase 3	ACYLTRANSFERASE 3		5	LOC_Os05g04584.	 Biochemical character	Os05g0136900	LOC_Os05g04584.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11736	_	OsAT4, OsAt4, AT4, PMT, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1	_	acyltransferase 4, p-coumarate monolignol transferase, p-coumaroyl-CoA monolignol transferase 1			1	an HxxxD acyltransferase. LOC_Os01g18744.	 Biochemical character	Os01g0291500	LOC_Os01g18744.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11737	AT5	OsAT5, OsAt5, OsFMT1, FMT1	ACYLTRANSFERASE 5	acyltransferase 5, feruloyl-coenzyme A monolignol transferase 1	ACYLTRANSFERASE 5		5	LOC_Os05g19910. a BAHD feruloyl-coenzyme A monolignol transferase .	 Biochemical character	Os05g0278500	LOC_Os05g19910.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11738	AT6	OsAT6, OsAt6	ACYLTRANSFERASE 6	acyltransferase 6	ACYLTRANSFERASE 6		1	LOC_Os01g08380.	 Biochemical character	Os01g0179000	LOC_Os01g08380.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11739	AT7	OsAT7, OsAt7	ACYLTRANSFERASE 7	acyltransferase 7	ACYLTRANSFERASE 7		5	LOC_Os05g08640. a putative arabinoxylan feruloyl transferase gene from family PF02458.	 Biochemical character	Os05g0179300	LOC_Os05g08640.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11740	AT8	OsAT8, OsAt8	ACYLTRANSFERASE 8	acyltransferase 8	ACYLTRANSFERASE 8		6	LOC_Os06g39470. a putative arabinoxylan feruloyl transferase gene from family PF02458.	 Biochemical character	Os06g0595800	LOC_Os06g39470.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11741	AT9	OsAT9, OsAt9	ACYLTRANSFERASE 9	acyltransferase 9	ACYLTRANSFERASE 9		1	LOC_Os01g09010. a putative arabinoxylan feruloyl transferase gene from family PF02458.	 Biochemical character	Os01g0185300	LOC_Os01g09010.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11742	AT10	OsAT10, OsAt10	ACYLTRANSFERASE 10	acyltransferase 10	ACYLTRANSFERASE 10		6	LOC_Os06g39390. a BAHD Acyltransferase. BAHD acyl-coenzyme A-utilizing transferase. a p-coumaroyl coenzyme A transferase. a putative arabinoxylan feruloyl transferase gene from family PF02458.	 Biochemical character	Os06g0594600 	LOC_Os06g39390.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11743	AT11	OsAT11, OsAt11	ACYLTRANSFERASE 11	acyltransferase 11	ACYLTRANSFERASE 11		4	LOC_Os04g11810.	 Biochemical character	Os04g0194466	LOC_Os04g11810.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11744	AT12	OsAT12, OsAt12	ACYLTRANSFERASE 12	acyltransferase 12	ACYLTRANSFERASE 12		4	LOC_Os04g09590.	 Biochemical character	Os04g0175500	LOC_Os04g09590.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11745	AT13	OsAT13, OsAt13	ACYLTRANSFERASE 13	acyltransferase 13	ACYLTRANSFERASE 13		10	LOC_Os10g01930.	 Biochemical character	Os10g0108800	LOC_Os10g01930.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11746	AT14	OsAT14, OsAt14	ACYLTRANSFERASE 14	acyltransferase 14	ACYLTRANSFERASE 14		10	LOC_Os10g02000.	 Biochemical character	Os10g0109200	LOC_Os10g02000.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11747	AT15	OsAT15, OsAt15	ACYLTRANSFERASE 15	acyltransferase 15	ACYLTRANSFERASE 15		10	LOC_Os10g01920.	 Biochemical character	Os10g0108700	LOC_Os10g01920.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11748	AT16	OsAT16, OsAt16	ACYLTRANSFERASE 16	acyltransferase 16	ACYLTRANSFERASE 16		10	LOC_Os10g01800.	 Biochemical character	Os10g0107400	LOC_Os10g01800.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11749	AT17	OsAT17, OsAt17	ACYLTRANSFERASE 17	acyltransferase 17	ACYLTRANSFERASE 17		10	LOC_Os10g03360.	 Biochemical character	Os10g0122300	LOC_Os10g03360.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11750	AT18	OsAT18, OsAt18	ACYLTRANSFERASE 18	acyltransferase 18	ACYLTRANSFERASE 18		10	LOC_Os10g03390.	 Biochemical character	Os10g0122500	LOC_Os10g03390.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11751	AT19	OsAT19, OsAt19	ACYLTRANSFERASE 19	acyltransferase 19	ACYLTRANSFERASE 19		4	LOC_Os04g09260.	 Biochemical character	Os04g0172400	LOC_Os04g09260.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11752	AT20	OsAT20, OsAt20	ACYLTRANSFERASE 20	acyltransferase 20	ACYLTRANSFERASE 20		6	LOC_Os06g48560.	 Biochemical character	Os06g0699100	LOC_Os06g48560.1						
11753	_	OsPAPST1	_	3'-Phosphoadenosine 5'-Phosphosulfate Transporter1		papst1	1		 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os01g0265200	LOC_Os01g16040.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
11754	_	OsBLH1	_	BEL1-like homeodomain gene 1			12		 Reproductive organ - Spikelet, flower, glume, awn	Os12g0160500	LOC_Os12g06340.3, LOC_Os12g06340.2, LOC_Os12g06340.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
11755	_	OsKANADI4	_				3	a rice homologue of Arabidopsis KANADI.	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0766500	LOC_Os03g55760.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
11756	MIR444A	OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p	MICRORNA444A	rice microRNA444a				miRBASE accession: MI0001719. predicted target(s): MADS-box transcription factors. miR444 targets: MIKC-type MADS-box genes MADS-23, MADS-27a, MADS-27b and MADS-57. GO:1902025: nitrate import. TO:0020094: nitrate content. TO:0020100: nitrate uptake. LM379526 LM380638 LM382870. miR444 in Wang et al. 2016.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0016036 - cellular response to phosphate starvation, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0051607 - defense response to virus, GO:0035195 - gene silencing by miRNA, GO:0048364 - root development, GO:0010167 - response to nitrate	TO:0000656 - root development trait, TO:0000148 - viral disease resistance	
11757	_	OsPIANK1	_	Ankyrin Repeat-Containing Protein OsPIANK1			11		 Tolerance and resistance - Disease resistance	Os11g0182500	LOC_Os11g07980.2, LOC_Os11g07980.1						
11758	_	OsIRX9, IRX9, OsGT43C/OsIRX9, OsGT43C	_	IRREGULAR XYLEM 9, glycosyltransferase family GT43 member C			7	Q6Z3Y6. LOC_Os07g49370. Glycosyltransferase family 43 protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0694400	LOC_Os07g49370.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0009827 - plant-type cell wall modification	TO:0002649 - pesticide sensitivity	
11759	_	OsIRX9L, OsGT43F/OsIRX9L, OsGT43F	_	IRREGULAR XYLEM 9L, glycosyltransferase family GT43 member F			1	Q5QM25. LOC_Os01g48440. Glycosyltransferase family 43 protein.	 Biochemical character	Os01g0675500	LOC_Os01g48440.3, LOC_Os01g48440.2, LOC_Os01g48440.1				GO:0000139 - Golgi membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0016021 - integral to membrane		
11760	_	OsIRX14, IRX14, OsGT43J, GT43J, OsGT43J/OsIRX14	_	IRREGULAR XYLEM 14, glycosyltransferase family GT43 member J			6	Q653F4. LOC_Os06g47340. Glycosyltransferase family 43 protein. an IRX14 homolog.	 Biochemical character	Os06g0687900	LOC_Os06g47340.1				GO:0010051 - xylem and phloem pattern formation, GO:0010154 - fruit development, GO:0010417 - glucuronoxylan biosynthetic process, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0000139 - Golgi membrane, GO:0042285 - xylosyltransferase activity, GO:0048367 - shoot development, GO:0045492 - xylan biosynthetic process, GO:0009827 - plant-type cell wall modification, GO:0016021 - integral to membrane		
11761	_	OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2	_	somatic embryogenesis receptor-like kinase 2, somatic embryogenesis receptor kinase 2, bri1-associated receptor kinase 1 (BAK1) homologue 2			4	OsSERK1 in Hu et al. 2005 and Song et al. 2008. BF889447, AY652735. AAU88198. AL606636. An XA21-Associated Kinase. LOC_Os04g38480. BF889447.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os04g0457800	LOC_Os04g38480.2, LOC_Os04g38480.1				GO:0009742 - brassinosteroid mediated signaling, GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0001654 - eye development, GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0002677 - brassinosteroid sensitivity	
11762	_	OsRFPH2-1	_	RING finger protein OsRFPH2-1, RING-H2 protein 1			5			Os05g0596500	LOC_Os05g51780.1				GO:0008270 - zinc ion binding		
11763	_	OsRFPH2-2	_	RING finger protein OsRFPH2-2, RING-H2 protein 2			2	LOC_Os02g45390.	 Tolerance and resistance - Stress tolerance	Os02g0676500	LOC_Os02g45390.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11764	_	OsRFPH2-3	_	RING finger protein OsRFPH2-3, RING-H2 protein 3			1	LOC_Os01g74040.	 Tolerance and resistance - Stress tolerance	Os01g0972000	LOC_Os01g74040.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait, TO:0000168 - abiotic stress trait	
11765	_	OsRFPH2-4	_	RING finger protein OsRFPH2-4, RING-H2 protein 4			1			Os01g0311100	LOC_Os01g20910.1						
11766	_	OsRFPH2-5	_	RING finger protein OsRFPH2-5, RING-H2 protein 5			5	LOC_Os05g08610.	 Tolerance and resistance - Stress tolerance	Os05g0179000	LOC_Os05g08610.4, LOC_Os05g08610.3, LOC_Os05g08610.2, LOC_Os05g08610.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000168 - abiotic stress trait, TO:0000161 - radiation response trait	
11767	_	OsRFPH2-6	_	RING finger protein OsRFPH2-6, RING-H2 protein 6			4	LOC_Os04g49160.	 Tolerance and resistance - Stress tolerance	Os04g0580800	LOC_Os04g49160.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait	
11768	_	OsRFPH2-7	_	RING finger protein OsRFPH2-7, RING-H2 protein 7			6	LOC_Os06g12560.	 Tolerance and resistance - Stress tolerance	Os06g0231600	LOC_Os06g12560.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait	
11769	_	OsRFPH2-8	_	RING finger protein OsRFPH2-8, RING-H2 protein 8			1		 Tolerance and resistance - Stress tolerance	Os01g0213400	LOC_Os01g11520.1				GO:0008270 - zinc ion binding		
11770	_	OsRFPH2-9	_	RING finger protein OsRFPH2-9, RING-H2 protein 9			3			Os03g0142500	LOC_Os03g04890.1				GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane		
11771	RFI2	OsRFPH2-10, RFPH2-10, OsRFI2	RED AND FAR-RED INSENSITIVE 2	RING finger protein OsRFPH2-10, RING-H2 protein 10, RING-H2 Finger E3 Ubiquitin Ligase 10			8	high sequence similarity to Arabidopsis RED AND FAR-RED INSENSITIVE 2 (RFI2).	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance	Os08g0539300	LOC_Os08g42640.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance, TO:0000137 - days to heading, TO:0002616 - flowering time	
11772	_	OsRFPH2-11, OsHIR1	_	RING finger protein OsRFPH2-11, RING-H2 protein 11, heavy metal induced RING E3 ligase 1			10	TO:0006054: arsenic concentration. TO:0006059: cadmium concentration.	 Tolerance and resistance - Stress tolerance	Os10g0406200	LOC_Os10g26610.2, LOC_Os10g26610.1				GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait	
11773	_	OsRFPH2-12	_	RING finger protein OsRFPH2-12, RING-H2 protein 12			1		 Tolerance and resistance - Stress tolerance	Os01g0802000	LOC_Os01g58780.1				GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait	
11774	_	OsRFPH2-13	_	RING finger protein OsRFPH2-13, RING-H2 protein 13			7	LOC_Os07g22840.	 Tolerance and resistance - Stress tolerance	Os07g0411200	LOC_Os07g22840.1				GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11775	_	OsRFPH2-14	_	RING finger protein OsRFPH2-14, RING-H2 protein 14			4		 Tolerance and resistance - Stress tolerance	Os04g0571200	LOC_Os04g48260.1				GO:0008270 - zinc ion binding		
11776	_	OsRFPH2-15	_	RING finger protein OsRFPH2-15, RING-H2 protein 15			2	LOC_Os02g40664.	 Tolerance and resistance - Stress tolerance	Os02g0619600	LOC_Os02g40664.1				GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11777	_	OsRFPH2-16, OsGIRP1	_	RING finger protein OsRFPH2-16, RING-H2 protein 16, gamma rays-induced RING finger protein1, gamma rays-induced RING finger protein 1			11	LOC_Os11g41140.	 Tolerance and resistance - Stress tolerance	Os11g0629300	LOC_Os11g41140.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11778	_	OsRFPH2-17	_	RING finger protein OsRFPH2-17, RING-H2 protein 17			7			Os07g0479100	LOC_Os07g29600.2, LOC_Os07g29600.1				GO:0010200 - response to chitin, GO:0031351 - integral to plastid membrane, GO:0008270 - zinc ion binding, GO:0009299 - mRNA transcription, GO:0009416 - response to light stimulus, GO:0009535 - chloroplast thylakoid membrane		
11779	_	OsRFPH2-18	_	RING finger protein OsRFPH2-18, RING-H2 protein 18			12	LOC_Os12g39110.	 Tolerance and resistance - Stress tolerance	Os12g0580700	LOC_Os12g39110.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait, TO:0000161 - radiation response trait	
11780	_	OsRFPH2-19	_	RING finger protein OsRFPH2-19, RING-H2 protein 19			3	LOC_Os03g57500. RHF homolog in Wang et al. 2013.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0788800	LOC_Os03g57500.1				GO:0051726 - regulation of cell cycle, GO:0009561 - megagametogenesis, GO:0055046 - microgametogenesis, GO:0008270 - zinc ion binding, GO:0051603 - proteolysis involved in cellular protein catabolic process, GO:0005886 - plasma membrane	TO:0000350 - cms-hl type	
11781	_	OsRFPH2-20	_	RING finger protein OsRFPH2-20, RING-H2 protein 20			5			Os05g0550000	LOC_Os05g47670.1						
11782	_	OsRFPH2-21	_	RING finger protein OsRFPH2-21, RING-H2 protein 21			6			Os06g0101300	LOC_Os06g01200.1				GO:0008270 - zinc ion binding		
11783	_	OsRFPH2-22	_	RING finger protein OsRFPH2-22, RING-H2 protein 22			2		 Tolerance and resistance - Stress tolerance	Os02g0787500	LOC_Os02g54624.1				GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait	
11784	_	OsRFPH2-23	_	RING finger protein OsRFPH2-23, RING-H2 protein 23			1		 Tolerance and resistance - Stress tolerance	Os01g0692700	LOC_Os01g49770.2, LOC_Os01g49770.1				GO:0008270 - zinc ion binding		
11785	_	OsRFPH2-24, OsHRZ2, HRZ2	_	RING finger protein OsRFPH2-24, RING-H2 protein 24, Haemerythrin motif-containing Really Interesting New Gene (RING)-and Zinc-finger protein 2, Haemerythrin motif-containing RING- and Zinc-finger protein 2		hrz2-1	5	OsHRZ2 negatively regulates responses to Fe deficiency. a RING ubiquitin ligase. a close homolog of Arabidopsis BTS. an Arabidopsis thaliana BRUTUS (BTS) ortholog. putative iron-sensing factor. putative Fe and oxygen/redox state sensor. iron-binding ubiquitin ligase. GO:1901967: negative regulation of cellular response to iron ion starvation. GO:1990641: response to iron ion starvation. TO:0020089: iron content trait. TO:0006049: iron concentration. TO:0020090: zinc content trait. TO:0006053: zinc concentration.	 Tolerance and resistance - Stress tolerance	Os05g0551000	LOC_Os05g47780.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0008270 - zinc ion binding, GO:0010106 - cellular response to iron ion starvation, GO:0005506 - iron ion binding	TO:0000224 - iron sensitivity	
11786	_	OsRFPHC-1, OsNLA2, NLA2	_	RING finger protein OsRFPHC-1, RING-HC protein 1			3	Q7XZZ3. LOC_Os03g44810. one of the two orthologs of Arabidopsis NLA (AtNLA) in rice.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0650900	LOC_Os03g44810.4, LOC_Os03g44810.3, LOC_Os03g44810.2, LOC_Os03g44810.1				GO:0008270 - zinc ion binding, GO:0016567 - protein ubiquitination, GO:0016874 - ligase activity, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11787	_	OsRFPHC-2	_	RING finger protein OsRFPHC-2, RING-HC protein 2			8		 Tolerance and resistance - Stress tolerance	Os08g0135400	LOC_Os08g04130.3, LOC_Os08g04130.2, LOC_Os08g04130.1				GO:0008270 - zinc ion binding		
11788	_	OsRFPHC-4	_	RING finger protein OsRFPHC-4, RING-HC protein 4			7	LOC_Os07g46700.	 Tolerance and resistance - Stress tolerance	Os07g0661600	LOC_Os07g46700.4, LOC_Os07g46700.3, LOC_Os07g46700.2, LOC_Os07g46700.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait, TO:0000161 - radiation response trait	
11789	_	OsRFPHC-5, RFPHC-5	_	RING finger protein OsRFPHC-5, RING-HC protein 5			9	LOC_Os09g33740.	 Tolerance and resistance - Stress tolerance	 Os09g0512132/Os09g0512200/Os09g0512450					GO:0003824 - catalytic activity		
11790	_	OsRFPHC-6	_	RING finger protein OsRFPHC-6, RING-HC protein 6			7			Os07g0626900	LOC_Os07g43380.1				GO:0008270 - zinc ion binding		
11791	_	OsRFPHC-8	_	RING finger protein OsRFPHC-8, RING-HC protein 8			5	LOC_Os05g33000.	 Tolerance and resistance - Stress tolerance	Os05g0397650	LOC_Os05g33000.2, LOC_Os05g33000.1				GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11792	_	OsRFPHC-9	_	RING finger protein OsRFPHC-9, RING-HC protein 9			2		 Biochemical character	Os02g0128800	LOC_Os02g03620.1				GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0004842 - ubiquitin-protein ligase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding		
11793	_	OsRFPHC-10, SIP13	_	RING finger protein OsRFPHC-10, RING-HC protein 10, SKIP interacting protein 13, SKIPa-interacting protein 13, SKIPa-interacting protein 13			10	EU368703. LOC_Os10g36880. 	 Tolerance and resistance - Stress tolerance	Os10g0512800	LOC_Os10g36880.1				GO:0005856 - cytoskeleton, GO:0007049 - cell cycle		
11794	_	OsRFPHC-11	_	RING finger protein OsRFPHC-11, RING-HC protein 11			5			Os05g0102600	LOC_Os05g01230.1				GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0008327 - methyl-CpG binding, GO:0010385 - double-stranded methylated DNA binding, GO:0010428 - methyl-CpNpG binding, GO:0010429 - methyl-CpNpN binding, GO:0031508 - centromeric heterochromatin formation, GO:0032776 - DNA methylation on cytosine, GO:0051301 - cell division, GO:0010228 - vegetative to reproductive phase transition, GO:0010369 - chromocenter		
11795	_	OsRFPHC-12	_	RING finger protein OsRFPHC-12, RING-HC protein 12			4		 Tolerance and resistance - Stress tolerance	Os04g0512400	LOC_Os04g43300.1				GO:0008270 - zinc ion binding		
11796	_	OsRFPHC-13, OsNLA, NAL, OsNLA1, NAL1	_	RING finger protein OsRFPHC-13, RING-HC protein 13, nitrogen limitation adaptation		osnla1, osnla1-1, osnla1-2, Osnla1-3	7	LOC_Os07g47590. Q7XI73. a rice homolog of AtNLA. one of the two orthologs of Arabidopsis NLA (AtNLA) in rice. RING-type E3 ubiquitin-ligase. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0673200	LOC_Os07g47590.3, LOC_Os07g47590.2, LOC_Os07g47590.1				GO:0055062 - phosphate ion homeostasis, GO:0005886 - plasma membrane, GO:0009626 - plant-type hypersensitive response, GO:0009627 - systemic acquired resistance, GO:0009697 - salicylic acid biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0010167 - response to nitrate, GO:0010337 - regulation of salicylic acid metabolic process, GO:0016567 - protein ubiquitination, GO:0016874 - ligase activity, GO:0042742 - defense response to bacterium, GO:0055081 - anion homeostasis, GO:0080021 - response to benzoic acid stimulus, GO:0010966 - regulation of phosphate transport, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0048767 - root hair elongation	TO:0002665 - root hair length	
11797	_	OsRFPHC-14, OsSTA9	_	RING finger protein OsRFPHC-14, RING-HC protein 14			1	LOC_Os01g13370. a mature anther-preferentially expressed gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0234900	LOC_Os01g13370.1				GO:0008270 - zinc ion binding, GO:0005739 - mitochondrion, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004842 - ubiquitin-protein ligase activity, GO:0005634 - nucleus, GO:0007275 - multicellular organismal development	TO:0000168 - abiotic stress trait	PO:0009066 - anther 
11798	_	OsRFPHC-15	_	RING finger protein OsRFPHC-15, RING-HC protein 15			5			Os05g0275700	LOC_Os05g19480.1				GO:0005829 - cytosol, GO:0009640 - photomorphogenesis, GO:0016558 - protein import into peroxisome matrix, GO:0006635 - fatty acid beta-oxidation, GO:0008270 - zinc ion binding, GO:0005777 - peroxisome		
11799	_	OsRFPHC-16	_	RING finger protein OsRFPHC-16, RING-HC protein 16			9	LOC_Os09g39690.	 Tolerance and resistance - Stress tolerance	Os09g0570500	LOC_Os09g39690.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11800	_	OsRFPV-1	_	RING finger protein OsRFPV-1, RING-V protein 1			1	LOC_Os01g19800.	 Tolerance and resistance - Stress tolerance	Os01g0303600	LOC_Os01g19800.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait	
11801	_	OsRFPV-2	_	RING finger protein OsRFPV-2, RING-V protein 2			5		 Tolerance and resistance - Stress tolerance	Os05g0355300	LOC_Os05g28730.1				GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait	
11802	_	OsRFPV-3	_	RING finger protein OsRFPV-3, RING-V protein 3			1			Os01g0850200	LOC_Os01g63150.1				GO:0008270 - zinc ion binding		
11803	_	OsRFPV-4	_	RING finger protein OsRFPV-4, RING-V protein 4			1			Os01g0610700	LOC_Os01g42500.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
11804	_	OsRFPV-5	_	RING finger protein OsRFPV-5, RING-V protein 5			6			Os06g0677300	LOC_Os06g46366.1				GO:0008270 - zinc ion binding		
11805	_	OsRFPV-6	_	RING finger protein OsRFPV-6, RING-V protein 6			2	LOC_Os02g03950.	 Tolerance and resistance - Stress tolerance	Os02g0132300	LOC_Os02g03950.5, LOC_Os02g03950.4, LOC_Os02g03950.3, LOC_Os02g03950.2, LOC_Os02g03950.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11806	_	OsRFPV-7	_	RING finger protein OsRFPV-7, RING-V protein 7			1	LOC_Os01g66970.	 Tolerance and resistance - Stress tolerance	Os01g0894600	LOC_Os01g66970.4, LOC_Os01g66970.3, LOC_Os01g66970.2, LOC_Os01g66970.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11807	NCED1	OsNCED1, OsCCD4a, CCD4a	9-CIS-EPOXYCAROTENOID DIOXYGENASE 1	9-cis-epoxycarotenoid dioxygenase 1, carotenoid-cleavage dioxygenase 4a	9-CIS-EPOXYCAROTENOID DIOXYGENASE 1		2	LOC_Os02g47510. AY838897. AB110203. a neoxanthin cleavage enzyme-like protein. 	 Biochemical character,  Coloration - Others,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0704000 	LOC_Os02g47510.1				GO:0006970 - response to osmotic stress, GO:0010287 - plastoglobule, GO:0009414 - response to water deprivation, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0009688 - abscisic acid biosynthetic process, GO:0051213 - dioxygenase activity, GO:0042742 - defense response to bacterium	TO:0000289 - carotene content, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000301 - xanthophyll content, TO:0000175 - bacterial blight disease resistance, TO:0000496 - carotenoid content, TO:0002667 - abscisic acid content	PO:0025034 - leaf 
11808	NCED2	OsNCED2, OsNced2, OsCCD4b, CCD4b	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2	9-cis-epoxycarotenoid dioxygenase 2, carotenoid-cleavage dioxygenase 4b	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2		12	AY838898. Q5MBR6.	 Biochemical character,  Coloration - Others	Os12g0435200 	LOC_Os12g24800.1				GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0046872 - metal ion binding, GO:0009688 - abscisic acid biosynthetic process, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0010287 - plastoglobule	TO:0000496 - carotenoid content, TO:0000289 - carotene content, TO:0000301 - xanthophyll content	PO:0009010 - seed 
11809	PIN4	OsPIN4	PIN PROTEIN 4		PIN PROTEIN 4												
11810	_	OsWIP6	_	C2H2-type zinc-finger transcription factor OsWIP6			9	A. thaliana WIP family transcription factor homolog.	 Reproductive organ - Pollination, fertilization, fertility,  Other	Os09g0485500	LOC_Os09g31140.1						
11811	CAP1		COLLAPSED ABNORMAL POLLEN1		ARABINOSE-LIKE PROTEIN	cap1	2		 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0141300	LOC_Os02g04840.1						
11812	_	Pho1, OsPho1, OsPHOL, PHOL	_	Starch phosphorylase 1, plastidial starch phosphorylase1, plastidial starch phosphorylase 1, Plastidic a-1, 4-glucan phosphorylase 2, tarch phosphorylase L		pho1, pho1-1, pho1-2	3	AB441692, AB441693, AB441694, AF327055. D23280.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os03g0758100	LOC_Os03g55090.1				GO:0009960 - endosperm development, GO:0009312 - oligosaccharide biosynthetic process, GO:0010581 - regulation of starch biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0009570 - chloroplast stroma, GO:0009414 - response to water deprivation, GO:0008184 - glycogen phosphorylase activity, GO:0009266 - response to temperature stimulus, GO:0019252 - starch biosynthetic process, GO:0005975 - carbohydrate metabolic process	TO:0002658 - starch grain synthesis	PO:0009089 - endosperm 
11813	_	Pho2, OsPho2	_	Starch phosphorylase 2, plastidial starch phosphorylase2, plastidial starch phosphorylase 2			1		 Biochemical character	Os01g0851700	LOC_Os01g63270.2, LOC_Os01g63270.1				GO:0030170 - pyridoxal phosphate binding, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0008184 - glycogen phosphorylase activity, GO:0046686 - response to cadmium ion, GO:0005975 - carbohydrate metabolic process		
11814	-	OsARA1	-	CAP1-related gene			6	NP_001058491		Os06g0702500	LOC_Os06g48940.1						
11815	PIGD2	Pi-GD-2(t), PiGD-2(t)	PYRICULARIA ORYZAE RESISTANCE GD2	Pyricularia oryzae resistance GD2			10	Original line is Sanhuangzhan 2 (Indica). mapped on chromosome 10, 3.9 cM from a nucleotide binding site leucine-rich repeater (NBS-LRR) marker (r16).	 Tolerance and resistance - Disease resistance			GR:0060657			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000480 - nutrient sensitivity, TO:0000468 - leaf blast disease resistance	
11816	PIG	Pi-g(t)	PYRICULARIA ORYZAE RESISTANCE G	Pyricularia oryzae resistance G			2	Original line is  Guangchangzhan (Indica). Map position (142.0-154.1 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000480 - nutrient sensitivity	
11817	PIGD3	Pi-GD-3(t), PiGD-3(t)	PYRICULARIA ORYZAE RESISTANCE GD3	Pyricularia oryzae resistance GD3			12	Original line is Sanhuangzhan 2 (Indica). mapped on chromosome 12, 4.8 cM from the SSR marker RM179.	 Tolerance and resistance - Disease resistance			GR:0060657		55.8	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000480 - nutrient sensitivity, TO:0000477 - panicle blast disease resistance	
11818	_	OsDUR3, DUR3	_	high-affinity urea transporter OsDUR3		osdur3, osdur3-dT, dur3-1, dur3-2	10	an ortholog of AtDUR3. Q7XBS0. AY463691, AU056606.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os10g0580400	LOC_Os10g42960.1				GO:0048573 - photoperiodism, flowering, GO:0005886 - plasma membrane, GO:0006995 - cellular response to nitrogen starvation, GO:0015204 - urea transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015293 - symporter activity	TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0000576 - stem length, TO:0000371 - yield trait, TO:0000011 - nitrogen sensitivity	PO:0000034 - vascular system , PO:0020139 - leaf midvein 
11819	_		_	OsUrease, Urease				HM369060. J023004J18, AK069176.	 Biochemical character						GO:0009039 - urease activity, GO:0043419 - urea catabolic process, GO:0016151 - nickel ion binding		
11820	_	UreD, OsUreD	_	urease accessory protein UreD				HM369057.							GO:0016151 - nickel ion binding, GO:0006807 - nitrogen compound metabolic process		
11821	_	UreF, OsUreF	_	urease accessory protein UreF				HM369058.							GO:0048554 - positive regulation of metalloenzyme activity, GO:0016151 - nickel ion binding, GO:0006807 - nitrogen compound metabolic process		
11822	_	UreG, OsUreG	_	urease accessory protein UreG			5	HM369059.		Os05g0565200	LOC_Os05g49050.1				GO:0048554 - positive regulation of metalloenzyme activity, GO:0016151 - nickel ion binding, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0003924 - GTPase activity, GO:0016530 - metallochaperone activity, GO:0016020 - membrane		
11823	_	KN, OsKN, OsSYP111, SYP111	_	Syntaxin-related protein KNOLLE, OsKNOLLE, KNOLLE, Syntaxin of Plants 111			3	SNARE superfamily. 	 Tolerance and resistance - Stress tolerance	Os03g0736500	LOC_Os03g52650.1				GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006886 - intracellular protein transport, GO:0009504 - cell plate, GO:0009524 - phragmoplast, GO:0012505 - endomembrane system, GO:0016192 - vesicle-mediated transport		
11824	_	OsZnI	_	Cys3/His1-type zinc finger protein ZnI				EU503083.	 Tolerance and resistance - Stress tolerance						GO:0006950 - response to stress		
11825	MIR167A	miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p	MICRORNA167A	MICRORNA167a, osa-miRNA167a	_		12	MicroRNA167 (miR167) was shown to cleave auxinresponsive factor 8 (ARF8) mRNA. Target genes: ARF and ARF6 (Yang et al. 2006). miRBASE accession: MI0000676.LM380903 LM379163	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000429 - salt sensitivity	
11826	MIR156A	miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a	MICRORNA156A	micro RNA 156a, microRNA156a, osa-miRNA156a	_		1	miRBASE accession: MI0000653. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. LM379141.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
11827	MIR160A	miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a	MICRORNA160A	MICRORNA160a, osa-miRNA160a	_		2	miRBASE accession: MI0000663.LM383048 LM379150	 Other						GO:0035195 - gene silencing by miRNA, GO:0009733 - response to auxin stimulus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000163 - auxin sensitivity	
11828	MIR162A	miR162a, osa-miR162a, osa-MIR162a	MICRORNA162A	MICRORNA162a, osa-miRNA162a	_		2	miRBASE accession: MI0000667.LM379154	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0046686 - response to cadmium ion	TO:0000074 - blast disease	
11829	MIR164A	miR164a, osa-miR164a	MICRORNA164A	MICRORNA164a, osa-miRNA164a	_		7	miRBASE accession: MI0000668. HM139156-HM139197 (O. sativa, O. rufipogon). LM379155. authentic target genes of miR164a: OsNAC60 (LOC_Os12g41680), OsNAC11 (LOC_Os06g46270).	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0009863 - salicylic acid mediated signaling pathway, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
11830	MIR166A	miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p	MICRORNA166A	MICRORNA166a, osa-miRNA166a	_		10	miRBASE accession: MI0000670. HM139331-HM139339.LM379157 LM383052	 Tolerance and resistance - Disease resistance,  Other						GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000074 - blast disease	
11831	MIR169	miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a	MICRORNA169	MICRORNA169, osa-miRNA169, MICRORNA169a, osa-miRNA169a	_		1	miRBASE accession: MI0000679. LM379166. predicted target: Os03g0738400.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000303 - cold tolerance, TO:0000074 - blast disease	
11832	MIR171	miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a	MICRORNA171	osa-miRNA171, MICRORNA171a, osa-miRNA171a	_		6	miRBASE accession: MI0000680. target gene(s): GRAS transcription factors. LM379167.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion	TO:0000429 - salt sensitivity	
11833	MIR162B	miR162b, osa-miR162b, osa-MIR162b	MICRORNA162B	MICRORNA162b, osa-miRNA162b	_		4	miRBASE accession: MI0001102. AY551224. LM379315. confirmed target: OsTRE1 Os10g0521000).	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0009414 - response to water deprivation, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000276 - drought tolerance	
11834	MIR167B	miR167b, osa-miR167b	MICRORNA167B	MICRORNA167b, osa-miRNA167b	_		3	miRBASE accession: MI0000677. target genes: ARF6 and ARF8 (Yang et al. 2006).LM379164	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000429 - salt sensitivity	
11835	MIR167C	miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p	MICRORNA167C	MICRORNA167c, osa-miRNA167c	_		3	miRBASE accession: MI0000678.LM383057 LM379165	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
11836	MIR167E	miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p	MICRORNA167E	MICRORNA167e	_		2	miRBASE accession: MI0001110. LM383068 LM379322	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
11837	MIR167F	miR167f, osa-miR167f, osa-miRNA167f	MICRORNA167F	MICRORNA167f, osa-miRNA167f	_		10	miRBASE accession: MI0001111. AY551235.LM379323	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus	TO:0000429 - salt sensitivity, TO:0000074 - blast disease	
11838	MIR167G	miR167g, osa-miR167g, osa-miRNA167g	MICRORNA167G	MICRORNA167g, osa-miRNA167g	_		3	miRBASE accession: MI0001112. AY551236.LM379324	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000074 - blast disease	
11839	MIR167H	miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p	MICRORNA167H	MICRORNA167h, osa-miRNA167h	_		12	miRBASE accession: MI0001113. LM383069 LM379325	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
11840	MIR167I	miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p	MICRORNA167I	MICRORNA167i, osa-miRNA167i	_		6	miRBASE accession: MI0001114. AY551238.LM383070 LM379326	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
11841	MIR167J	miR167j, osa-miR167j, osa-MIR167j	MICRORNA167J	MICRORNA167j, osa-miRNA167j	_		1	miRBASE accession: MI0001156. AY551237.LM379359	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
11842	MIR168A	miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p	MICRORNA168A	MICRORNA168a, osa-miRNA168a	_		2	miRBASE accession: MI0001115. AY551239. LM381727, LM379327.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
11843	LC2	OsLC2, OsVIL2, VIL2, OsVIL3	LEAF INCLINATION 2	leaf inclination2, Leaf Inclination 2, VIN3-LIKE 2, VERNALIZATION INSENSITIVE 3-LIKE 2, VERNALIZATION INSENSITIVE 3-LIKE 3		lc2, lc2-1, lc2-2, lc2-3, osvil2, osvil2-1, osvil2-2	2	LOC_Os02g05840. a VIN3-like protein. OsVIL3 in Wang et al. 2013. a possible component of PRC2 complex. Chromatin interacting factor.	 Vegetative organ - Leaf,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os02g0152500	LOC_Os02g05840.1				GO:0009737 - response to abscisic acid stimulus, GO:2000028 - regulation of photoperiodism, flowering, GO:0009733 - response to auxin stimulus, GO:0051302 - regulation of cell division, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000447 - filled grain number, TO:0002616 - flowering time, TO:0000166 - gibberellic acid sensitivity, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000396 - grain yield, TO:0000457 - total biomass yield, TO:0000206 - leaf angle, TO:0006032 - panicle size, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0000137 - days to heading, TO:0000615 - abscisic acid sensitivity	
11844	_	OsVIL1, VIL1, OsVIL2	_	VIN3-LIKE 1, VERNALIZATION INSENSITIVE 3-LIKE 1, VERNALIZATION INSENSITIVE 3-LIKE 2			12	ABA98812. OsVIL2 in Wang et al. 2013. LOC_Os12g34850. a possible component of PRC2 complex. homologous to the flowering promoter OsVIL2.	 Reproductive organ - Heading date	Os12g0533500	LOC_Os12g34850.1				GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:2000028 - regulation of photoperiodism, flowering	TO:0002616 - flowering time, TO:0000137 - days to heading	
11845	_	OsVIL3, OsVIL4, VIL1	_	VIN3-LIKE 3, VERNALIZATION INSENSITIVE 3-LIKE 4, VERNALIZATION INSENSITIVE 3-LIKE 1			5	AAT94000. OsVIL4 in Wang et al. 2013. LOC_Os05g05310. VIL1 in Zhang et al. 2014. LOC_Os05g05310.	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0145400	LOC_Os05g05310.2, LOC_Os05g05310.1				GO:0009908 - flower development		PO:0007615 - flower development stage 
11846	_	OsVIL4, OsVIL1	_	VIN3-LIKE 4, VERNALIZATION INSENSITIVE 3-LIKE 1			8	BAD03519. OsVIL1 in Wang et al. 2013. LOC_Os08g12430.		Os08g0220600	LOC_Os08g12430.1						
11847	_	OsSPX-MFS1, SPX-MFS1	_	SPX-MFS protein 1		mfs1	4	LOC_Os04g48390. Q0JAW2. OsSPX-MFS1 and OsSPX-MFS2 are both negatively regulated by osa-miR827 abundance. TO:0020102: phosphate content. a putative P transporter.	 Tolerance and resistance - Stress tolerance	Os04g0573000	LOC_Os04g48390.1				GO:0042594 - response to starvation, GO:0006817 - phosphate transport, GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane, GO:0000325 - plant-type vacuole, GO:0055085 - transmembrane transport	TO:0002661 - seed maturation	
11848	_	OsSPX-MFS2, SPX-MFS2	_	SPX-MFS protein 2			2	Q6EPQ3. OsSPX-MFS1 and OsSPX-MFS2 are both negatively regulated by osa-miR827 abundance. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os02g0678200	LOC_Os02g45520.2, LOC_Os02g45520.1				GO:0005774 - vacuolar membrane, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0000325 - plant-type vacuole, GO:0006817 - phosphate transport	TO:0002661 - seed maturation	
11849	_	OsSPX-MFS3	_	SPX-MFS protein 3			6	Q658H5.		Os06g0129400	LOC_Os06g03860.4, LOC_Os06g03860.3, LOC_Os06g03860.2, LOC_Os06g03860.1				GO:0005774 - vacuolar membrane, GO:0055085 - transmembrane transport, GO:0000325 - plant-type vacuole, GO:0016021 - integral to membrane		
11850	_	OsSPX-MFS4	_	SPX-MFS protein 4			9	B9FMX4.		Os09g0521800	LOC_Os09g34990.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
11853	MIR393B	OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p	MICRORNA393B	MICRORNA393B	_		4	miRBASE accession: MI0001148.LM381728 LM379353	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0009737 - response to abscisic acid stimulus, GO:0010311 - lateral root formation, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009411 - response to UV, GO:0009651 - response to salt stress, GO:0046688 - response to copper ion, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000315 - bacterial disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity	
11854	_	OsDDM1a, DDM1a	_	Decrease in DNA Methylation 1a, Deficient in DNA Methylation 1a, DECREASE IN DNA METHYLATION1a		ddm1a, osddm1a	9	similar to Arabidopsis DDM1. LOC_Os09g27060. GO:0080188: RNA-directed DNA methylation.	 Other	Os09g0442700	LOC_Os09g27060.1				GO:0010424 - DNA methylation on cytosine within a CG sequence, GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0010425 - DNA methylation on cytosine within a CNG sequence, GO:0003677 - DNA binding, GO:0005524 - ATP binding		
11855	_	OsDDM1b, DDM1b, DDM1	_	Decrease in DNA Methylation 1b, Deficient in DNA Methylation 1b, DECREASE IN DNA METHYLATION1b		ddm1b, osddm1b	3	similar to Arabidopsis DDM1. LOC_Os03g51230. DDM1 in Li et al. 2017. SWI/SNF chromatin remodeler. GO:0080188: RNA-directed DNA methylation.	 Other	Os03g0722400	LOC_Os03g51230.2, LOC_Os03g51230.1				GO:0010425 - DNA methylation on cytosine within a CNG sequence, GO:0010424 - DNA methylation on cytosine within a CG sequence, GO:0010426 - DNA methylation on cytosine within a CHH sequence		
11856	-	OsRecQ2	-	RecQ-like helicase 2				AB246666.							GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0006310 - DNA recombination, GO:0005622 - intracellular, GO:0003676 - nucleic acid binding		
11858	_	OsFRO1	_	ferric reductase oxidase 1	_		4	AB126085.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0578600	LOC_Os04g48930.4, LOC_Os04g48930.3, LOC_Os04g48930.2, LOC_Os04g48930.1				GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane		
11859	_	OsFRO7, FRO7, OsFRO1, FRO1	_	ferric reductase oxidase 7	_		4	OsFRO1 in Kabir 2016. LOC_Os04g36720.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0444800	LOC_Os04g36720.1				GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0046687 - response to chromate, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0000293 - ferric-chelate reductase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009767 - photosynthetic electron transport chain	TO:0000615 - abscisic acid sensitivity, TO:0000034 - chromium sensitivity	
11860	_	rbohA, OsrbohA, Os rbohA, OsRbohA, OsRboh2	_	Respiratory Burst Oxidase Homolog A			1	OsrbohA in Yoshie et al. 2005. OsRboh2 in Zhang et al. 2014.	 Tolerance and resistance - Disease resistance	Os01g0734466	LOC_Os01g53294.1				GO:0050665 - hydrogen peroxide biosynthetic process, GO:0043069 - negative regulation of programmed cell death, GO:0010119 - regulation of stomatal movement, GO:0016491 - oxidoreductase activity, GO:0002679 - respiratory burst during defense response, GO:0005887 - integral to plasma membrane, GO:0052542 - callose deposition during defense response, GO:0009723 - response to ethylene stimulus		
11862	_	REP-1, OsSAG12-1, SAG12-1, OsEnS-21	_	cysteine endopeptidase REP-1, senescence associated gene 12-1, endosperm-specific gene 21	_		1	D76415. a Homologue of AtSAG12. cysteine proteinase EP-B 1. LOC_Os01g67980. EF122459.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0907600	LOC_Os01g67980.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
11863	PI7	Pi7, Pi-7(t), Pi7(t)	PYRICULARIA ORYZAE RESISTANCE 7 				11	Original line is RIL29(Moroberekan(Japonica)). Map position (71.4-84.3 cM). Pi7(t) was bracketed by RG103A and RG16 in chromosome 11. Pi7(t) is tightly linked to Pi1.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
11864	NDART1-A	nDart1-A	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-A	non-autonomous DNA-based active rice transposon 1-A				AB206819.	 Other						GO:0032196 - transposition		
11865	_	MgPIX MT	_	Mg-protoporphyrin IX methyltransferase		albino	6		 Biochemical character,  Coloration - Chlorophyll								
11866	NDART1-4(3-2)	nDart1-4(3-2)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-4(3-2)	non-autonomous DNA-based active rice transposon 1-4(3-2)			3		 Other						GO:0032196 - transposition		
11867	NDART1-4(3-1)	nDart1-4(3-1)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-4(3-1)	non-autonomous DNA-based active rice transposon 1-4(3-1)			3		 Other						GO:0032196 - transposition		
11868	DART0501	Dart0501	DNA-BASED ACTIVE RICE TRANSPOSON 0501	DNA-based active rice transposon 0501			5		 Other						GO:0032196 - transposition		
11869	DART0401	Dart0401	DNA-BASED ACTIVE RICE TRANSPOSON 0401	DNA-based active rice transposon 0401			4		 Other						GO:0032196 - transposition		
11870	DART1201	Dart1201	DNA-BASED ACTIVE RICE TRANSPOSON 1201	DNA-based active rice transposon 1201			12		 Other						GO:0032196 - transposition		
11871	DART1001	Dart1001	DNA-BASED ACTIVE RICE TRANSPOSON 1001	DNA-based active rice transposon 1001			10		 Other						GO:0032196 - transposition		
11872	DART0402	Dart0402	DNA-BASED ACTIVE RICE TRANSPOSON 0402	DNA-based active rice transposon 0402			4		 Other						GO:0032196 - transposition		
11873	DART0101	Dart0101	DNA-BASED ACTIVE RICE TRANSPOSON 0101	DNA-based active rice transposon 0101			1		 Other						GO:0032196 - transposition		
11874	ASB1	OASB1, OsASbeta1, ASbeta1	ANTHRANILATE SYNTHASE BETA-SUBUNIT 1	anthranilate synthase beta subunit 1, Anthranilate synthase beta 1 subunit	ANTHRANILATE SYNTHASE BETA-SUBUNIT 1		4	AB116721. LOC_Os04g38950. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os04g0463500	LOC_Os04g38950.3, LOC_Os04g38950.2, LOC_Os04g38950.1				GO:0002213 - defense response to insect, GO:0009617 - response to bacterium, GO:0009651 - response to salt stress, GO:0009851 - auxin biosynthetic process, GO:0009507 - chloroplast, GO:0009411 - response to UV, GO:0009723 - response to ethylene stimulus	TO:0000160 - UV light sensitivity, TO:0000424 - brown planthopper resistance	
11875	ASB2	OASB2	ANTHRANILATE SYNTHASE BETA-SUBUNIT 2	anthranilate synthase beta subunit 2, Anthranilate synthase beta 2 subunit	ANTHRANILATE SYNTHASE BETA-SUBUNIT 2		3	AB116722.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0718000 	LOC_Os03g50880.1				GO:0009851 - auxin biosynthetic process, GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress, GO:0009617 - response to bacterium, GO:0009507 - chloroplast, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
11876	FTL9	FT-L 9, OsFTL9	FLOWERING TIME LIKE GENE 9	FT-like gene 9			1	AP003076.						129.0			
11877	_	OsMFT1, MFT1	_	MFT-like gene 1, MOTHER OF FT AND TFL1			6	a homolog of A. thaliana MOTHER OF FT AND TFL1 (E12A11). TO:0000740: branch morphology trait.	 Reproductive organ - Heading date,  Reproductive organ - Panicle, Mode of branching	Os06g0498800	LOC_Os06g30370.1			65.8	GO:0009737 - response to abscisic acid stimulus, GO:0048573 - photoperiodism, flowering, GO:0010030 - positive regulation of seed germination, GO:0005634 - nucleus	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000456 - spikelet number, TO:0000137 - days to heading	
11878	_	OsMFT2, MFT2, OsMFT	_	MFT-like gene 2, MOTHER OF FT AND TFL 2			1	a homolog of A. thaliana MOTHER OF FT AND TFL1 (E12A11). the rice homolog of TaMFT2. OsMFT in Mao et al. 2019.	 Seed - Physiological traits - Dormancy	Os01g0111600	LOC_Os01g02120.1			5.3	GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0010030 - positive regulation of seed germination	TO:0000615 - abscisic acid sensitivity, TO:0000253 - seed dormancy	
11879	RCN3	Rcn3, OsRCN3, RCN3/FDR1, FDR1, Fdr1, OsFDR1	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 3	RICE CENTRORADIALIS 3	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 3		12	LOC_Os12g05590.1 AAD42896. a rice TFL1-like protein. GO:0090344:negative regulation of cell aging.	 Reproductive organ - Heading date	Os12g0152000	LOC_Os12g05590.1				GO:0005886 - plasma membrane, GO:0009910 - negative regulation of flower development, GO:0008429 - phosphatidylethanolamine binding, GO:0009744 - response to sucrose stimulus, GO:0031982 - vesicle, GO:0005773 - vacuole, GO:0006623 - protein targeting to vacuole		
11880	RCN4	Rcn4, OsRCN4	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 4	RICE CENTRORADIALIS 4	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 4		4	LOC_Os04g33570.1 AL662947. a rice TFL1-like protein. GO0090344:negative regulation of cell aging.	 Reproductive organ - Heading date	Os04g0411400 	LOC_Os04g33570.1			58.6	GO:0009910 - negative regulation of flower development, GO:0006623 - protein targeting to vacuole, GO:0005773 - vacuole, GO:0009744 - response to sucrose stimulus, GO:0031982 - vesicle, GO:0005886 - plasma membrane		
11881	_	OsNPR3, OsNH3, NPR3, NH3	_	NPR1-like gene 3			3	DQ450952.	 Tolerance and resistance - Disease resistance	Os03g0667100	LOC_Os03g46440.3, LOC_Os03g46440.2, LOC_Os03g46440.1				GO:0009816 - defense response to bacterium, incompatible interaction, GO:0009817 - defense response to fungus, incompatible interaction, GO:0005634 - nucleus		
11882	_	OsNPR4, NPR4	_	NPR1-like gene 4			1	DQ450954. BF889467.	 Tolerance and resistance - Disease resistance	Os01g0837000	LOC_Os01g61990.2, LOC_Os01g61990.1				GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
11883	_	OsNPR5	_	NPR1-like gene 5			1	DQ450956.		Os01g0948900	LOC_Os01g72020.2, LOC_Os01g72020.1				GO:0009944 - polarity specification of adaxial/abaxial axis, GO:0048439 - flower morphogenesis, GO:0005634 - nucleus, GO:0010582 - floral meristem determinacy, GO:0009954 - proximal/distal pattern formation, GO:0010254 - nectary development, GO:0010227 - floral organ abscission, GO:0005737 - cytoplasm		
11884	_	OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2	_	shaggy-like kinase gamma, GSK3/SHAGGY-Like Kinase 11, GSK3-like Kinase 2			1	LOC_Os01g14860. a GSK3/SHAGGY-like kinase clade I member.		Os01g0252100	LOC_Os01g14860.4, LOC_Os01g14860.3, LOC_Os01g14860.2, LOC_Os01g14860.1				GO:0009933 - meristem structural organization, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005829 - cytosol		
11885	_	ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1	_	O-methyltransferase ROMT16, caffeoyl CoA O-methyltransferase 1			6		 Biochemical character	Os06g0165800	LOC_Os06g06980.3, LOC_Os06g06980.1				GO:0042409 - caffeoyl-CoA O-methyltransferase activity, GO:0009805 - coumarin biosynthetic process, GO:0046686 - response to cadmium ion, GO:0009807 - lignan biosynthetic process	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
11886	INO2	OsINO2, RINO2, OsINO1-2	INOSITOL 1-PHOSPHATE SYNTHASE-2	inositol 1-phosphate synthase-2, Inositol-3-phosphate synthase 2, Myo-inositol-1-phosphate synthase 2, MI-1-P synthase 2, 1D-myo-inositol 3-phosphate synthase 2	INOSITOL 1-PHOSPHATE SYNTHASE-2		10	FJ237300 (PcINO1-2: Oryza coarctata INO1-2).	 Biochemical character	Os10g0369900	LOC_Os10g22450.1				GO:0050832 - defense response to fungus, GO:0051607 - defense response to virus, GO:0010264 - myo-inositol hexakisphosphate biosynthetic process, GO:0009791 - post-embryonic development, GO:0009644 - response to high light intensity, GO:0042542 - response to hydrogen peroxide, GO:0004512 - inositol-3-phosphate synthase activity, GO:0005737 - cytoplasm, GO:0000166 - nucleotide binding, GO:0008654 - phospholipid biosynthetic process, GO:0009408 - response to heat, GO:0006021 - inositol biosynthetic process, GO:0042742 - defense response to bacterium	TO:0000064 - embryo related trait, TO:0000488 - seed composition based quality trait	
11887	_	OsIPK1, IPK1	_	inositol 1, 3, 4, 5, 6-pentakisphosphate 2-kinase 1			4	LOC_Os04g56580.	 Biochemical character	Os04g0661200	LOC_Os04g56580.1				GO:0032942 - inositol tetrakisphosphate 2-kinase activity, GO:0051607 - defense response to virus, GO:0005524 - ATP binding, GO:0010264 - myo-inositol hexakisphosphate biosynthetic process, GO:0032958 - inositol phosphate biosynthetic process, GO:0042742 - defense response to bacterium, GO:0035299 - inositol pentakisphosphate 2-kinase activity, GO:0050832 - defense response to fungus, GO:0030643 - cellular phosphate ion homeostasis, GO:0009737 - response to abscisic acid stimulus, GO:0006793 - phosphorus metabolic process	TO:0000615 - abscisic acid sensitivity, TO:0002666 - seed phosphorus content	
11888	_	OsIPK2, IPK2, IP6K	_	inositol 1, 3, 4, 5, 6-pentakisphosphate 2-kinase 2, IP6 Kinase			2		 Biochemical character	Os02g0523800	LOC_Os02g32370.1				GO:0005634 - nucleus, GO:0009846 - pollen germination, GO:0009860 - pollen tube growth, GO:0009737 - response to abscisic acid stimulus, GO:0008440 - inositol trisphosphate 3-kinase activity, GO:0010264 - myo-inositol hexakisphosphate biosynthetic process, GO:0000823 - inositol trisphosphate 6-kinase activity, GO:0005886 - plasma membrane	TO:0000615 - abscisic acid sensitivity	
11889	_	OsIMP-1, IMP-1, OsIMP, IMP	_	inositol monophosphatase 1, L-myo-inositol monophosphatase, IMPase			3	GO:0080167:response to karrikin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0587000	LOC_Os03g39000.2, LOC_Os03g39000.1				GO:0005886 - plasma membrane, GO:0010347 - L-galactose-1-phosphate phosphatase activity, GO:0046854 - phosphoinositide phosphorylation, GO:0009409 - response to cold, GO:0006021 - inositol biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0008934 - inositol-1(or 4)-monophosphatase activity, GO:0019853 - L-ascorbic acid biosynthetic process	TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000495 - chlorophyll content	
11890	_	OsIMP-2, IMP-2	_	inositol monophosphatase 2			2		 Biochemical character	Os02g0169900	LOC_Os02g07350.1				GO:0008934 - inositol-1(or 4)-monophosphatase activity, GO:0009570 - chloroplast stroma, GO:0046854 - phosphoinositide phosphorylation		
11891	HSP80.2	OsHsp80.2, OsHSP80.2	80.2 KDA CLASS I HEAT SHOCK PROTEIN	80.2 kDa heat shock protein, 80.2-kD heat shock protein	80.2 KDA CLASS I HEAT SHOCK PROTEIN 		9	Q07078.	 Tolerance and resistance - Stress tolerance	Os09g0482400					GO:0048366 - leaf development, GO:0071277 - cellular response to calcium ion, GO:0006952 - defense response, GO:0009908 - flower development, GO:0010286 - heat acclimation, GO:0006457 - protein folding, GO:0050821 - protein stabilization, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0005829 - cytosol, GO:0005739 - mitochondrion, GO:0005730 - nucleolus, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
11892	HSP71.1	OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3	71.1 KDA CLASS I HEAT SHOCK PROTEIN	71.1 kDa heat shock protein, 71.1-kD heat shock protein, Mediator 37_3	71.1 KDA CLASS I HEAT SHOCK PROTEIN 		3	LOC_Os03g16860.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0276500	LOC_Os03g16860.2, LOC_Os03g16860.1				GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0006950 - response to stress	TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000653 - seed development trait, TO:0000402 - grain width	PO:0001170 - seed development stage 
11893	HSP24.1	OsHsp24.1, OsHSP24.1	24.1 KDA CLASS I HEAT SHOCK PROTEIN	24.1 kDa heat shock protein, 24.1-kD heat shock protein	24.1 KDA CLASS I HEAT SHOCK PROTEIN 		2	Q6Z7V2.	 Tolerance and resistance - Stress tolerance	Os02g0758000	LOC_Os02g52150.2, LOC_Os02g52150.1				GO:0005739 - mitochondrion, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress		
11894	HSP74.8	OsHsp74.8, OsHSP74.8	74.8 KDA CLASS I HEAT SHOCK PROTEIN	74.8 kDa heat shock protein, 74.8-kD heat shock protein	74.8 KDA CLASS I HEAT SHOCK PROTEIN 		9		 Tolerance and resistance - Stress tolerance	Os09g0474300	LOC_Os09g29840.2, LOC_Os09g29840.1				GO:0006950 - response to stress, GO:0006457 - protein folding, GO:0005524 - ATP binding		
11895	HSP58.7	OsHsp58.7, OsHSP58.7, OsISC25	58.7 KDA CLASS I HEAT SHOCK PROTEIN	58.7 kDa heat shock protein, 58.7-kD heat shock protein, Iron-sulfur cluster protein 25, heat shock protein 70	58.7 KDA CLASS I HEAT SHOCK PROTEIN		9	LOC_Os09g31486. heat shock protein 70 in Hihara et al. 1997. D29708. a DnaK/Hsp70s family protein.	 Tolerance and resistance - Stress tolerance	Os09g0491772	LOC_Os09g31486.2, LOC_Os09g31486.1				GO:0005886 - plasma membrane, GO:0005618 - cell wall, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0006457 - protein folding, GO:0005739 - mitochondrion, GO:0046686 - response to cadmium ion, GO:0005524 - ATP binding		
11896	HSP50.2	OsHsp50.2, OsHSP50.2	50.2 KDA CLASS I HEAT SHOCK PROTEIN	50.2 kDa heat shock protein, 50.2-kD heat shock protein	50.2 KDA CLASS I HEAT SHOCK PROTEIN		9	LOC_Os09g36420. Hsp90 family gene.	 Tolerance and resistance - Stress tolerance	Os09g0534600	LOC_Os09g36420.1				GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0006457 - protein folding, GO:0009651 - response to salt stress, GO:0009908 - flower development, GO:0010286 - heat acclimation, GO:0048046 - apoplast, GO:0048366 - leaf development, GO:0050821 - protein stabilization, GO:0071277 - cellular response to calcium ion, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0005739 - mitochondrion, GO:0005730 - nucleolus		
11897	_	PDIL1;2, PDIL1-2, PDIL 1-2, OsPDIL1-2	_	PROTEIN DISULFIDE ISOMERASE-LIKE 1;2, PROTEIN DISULFIDE ISOMERASE-LIKE 1-2, PDI-like protein 1-2	_		4	Q7XRB5. AY739308.	 Biochemical character	Os04g0436300	LOC_Os04g35600.1				GO:0003756 - protein disulfide isomerase activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009790 - embryonic development, GO:0043067 - regulation of programmed cell death, GO:0046686 - response to cadmium ion, GO:0045454 - cell redox homeostasis, GO:0009579 - thylakoid, GO:0005886 - plasma membrane, GO:0009505 - plant-type cell wall, GO:0000327 - lytic vacuole within protein storage vacuole, GO:0009507 - chloroplast, GO:0048316 - seed development, GO:0010043 - response to zinc ion, GO:0009651 - response to salt stress, GO:0034976 - response to endoplasmic reticulum stress, GO:0006457 - protein folding, GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process, GO:0005788 - endoplasmic reticulum lumen		
11898	_	PDIL1;3, PDIL1-3, PDIL 1-3, OsPDIL1-3	_	PROTEIN DISULFIDE ISOMERASE-LIKE 1;3, PROTEIN DISULFIDE ISOMERASE-LIKE 1-3, PDI-like protein 1-3	_		2	Q69ST6.	 Biochemical character	Os02g0554900	LOC_Os02g34940.2, LOC_Os02g34940.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0005886 - plasma membrane, GO:0006457 - protein folding, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity, GO:0009505 - plant-type cell wall, GO:0009507 - chloroplast, GO:0009579 - thylakoid, GO:0009651 - response to salt stress, GO:0009790 - embryonic development, GO:0010043 - response to zinc ion, GO:0005788 - endoplasmic reticulum lumen, GO:0034976 - response to endoplasmic reticulum stress, GO:0043067 - regulation of programmed cell death, GO:0045454 - cell redox homeostasis, GO:0046686 - response to cadmium ion, GO:0048316 - seed development, GO:0000327 - lytic vacuole within protein storage vacuole, GO:0003756 - protein disulfide isomerase activity		
11899	_	PDIL1;5, PDIL1-5, PDIL 1-5, OsPDIL1-5	_	PROTEIN DISULFIDE ISOMERASE-LIKE 1;5, PROTEIN DISULFIDE ISOMERASE-LIKE 1-5, PDI-like protein 1-5	_		6	Q5WA72.	 Biochemical character	Os06g0163400	LOC_Os06g06790.1				GO:0003756 - protein disulfide isomerase activity, GO:0006457 - protein folding, GO:0045454 - cell redox homeostasis, GO:0005788 - endoplasmic reticulum lumen		
11900	_	PDIL2;1, OsPDIL2;1, PDIL2-1, OsPDIL2-1	_	PROTEIN DISULFIDE ISOMERASE-LIKE 2;1, PROTEIN DISULFIDE ISOMERASE-LIKE 2-1, PDI-like protein 2-1	_		5	LOC_Os05g06430. Q75M08. AU069742, AU173026, AU163011.	 Biochemical character	Os05g0156300	LOC_Os05g06430.2, LOC_Os05g06430.1				GO:0006662 - glycerol ether metabolic process, GO:0045454 - cell redox homeostasis, GO:0005783 - endoplasmic reticulum, GO:0005576 - extracellular region, GO:0003756 - protein disulfide isomerase activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0006457 - protein folding		
11901	_	PDIL2;2, PDIL2-2, PDIL 2-2, OsPDIL2-2	_	PROTEIN DISULFIDE ISOMERASE-LIKE 2;2, PROTEIN DISULFIDE ISOMERASE-LIKE 2-2, PDI-like protein 2-2	_		1	Q942L2. LOC_Os01g23740.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os01g0339900	LOC_Os01g23740.2, LOC_Os01g23740.1				GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process, GO:0006457 - protein folding, GO:0005783 - endoplasmic reticulum, GO:0005576 - extracellular region, GO:0003756 - protein disulfide isomerase activity, GO:0009856 - pollination, GO:0009860 - pollen tube growth, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
11902	_	PDIL5;1, PDIL5-1, PDIL 5-1, OsPDIL5-1	_	PROTEIN DISULFIDE ISOMERASE-LIKE 5;1, PROTEIN DISULFIDE ISOMERASE-LIKE 5-1, PDI-like protein 5-1	_		3	Q10N04.	 Biochemical character	Os03g0287900	LOC_Os03g17860.2, LOC_Os03g17860.1				GO:0045454 - cell redox homeostasis		
11903	_	PDIL5;2, OsPDIL5;2, PDIL5-2, OsPDIL5-2	_	PROTEIN DISULFIDE ISOMERASE-LIKE 5;2, PROTEIN DISULFIDE ISOMERASE-LIKE 5-2, PDI-like protein 5-2	_		4	LOC_Os04g35290. Q0JD42. 	 Biochemical character	Os04g0432500	LOC_Os04g35290.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0009505 - plant-type cell wall, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity, GO:0005886 - plasma membrane		
11904	_	PDIL5;3, PDIL5-3, PDIL 5-3, OsPDIL5-3	_	PROTEIN DISULFIDE ISOMERASE-LIKE 5;3, PROTEIN DISULFIDE ISOMERASE-LIKE 5-3, PDI-like protein 5-3	_		2	Q0E0I1.	 Biochemical character	Os02g0550300	LOC_Os02g34530.1				GO:0009505 - plant-type cell wall, GO:0005783 - endoplasmic reticulum, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005886 - plasma membrane, GO:0006662 - glycerol ether metabolic process, GO:0016021 - integral to membrane		
11905	_	PDIL5;4, PDIL5-4, PDIL 5-4, OsPDIL5-4	_	PROTEIN DISULFIDE ISOMERASE-LIKE 5;4, PROTEIN DISULFIDE ISOMERASE-LIKE 5-4, PDI-like protein 5-4	_		7	Q69SA9.	 Biochemical character	Os07g0524100	LOC_Os07g34030.2, LOC_Os07g34030.1				GO:0016021 - integral to membrane, GO:0045454 - cell redox homeostasis		
11909	_	OsSAE1a	_	E1 enzyme SAE1a											GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
11916	_	OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1	_	like aux1-1, related to AUX1-1, auxin transporter 1		osaux1, osaux1-1, osaux1-2, osaux1-3	1	Q5N892. AB275160. LOC_Os01g63770. GO:0060918: auxin transport. rice ortholog of Arabidopsis AUX1. GO:0080161: auxin transmembrane transporter activity.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0856500	LOC_Os01g63770.2, LOC_Os01g63770.1				GO:0080022 - primary root development, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0010446 - response to alkalinity, GO:0009629 - response to gravity, GO:0006865 - amino acid transport, GO:0048767 - root hair elongation, GO:0009733 - response to auxin stimulus, GO:0048449 - floral organ formation, GO:0010311 - lateral root formation, GO:0048527 - lateral root development, GO:0009734 - auxin mediated signaling pathway, GO:0042594 - response to starvation, GO:0046686 - response to cadmium ion, GO:0000302 - response to reactive oxygen species, GO:0048829 - root cap development, GO:0015293 - symporter activity, GO:0005886 - plasma membrane	TO:0000615 - abscisic acid sensitivity, TO:0000137 - days to heading, TO:0000145 - internode length, TO:0002665 - root hair length, TO:0001013 - lateral root number, TO:0001012 - lateral root length, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0006022 - floral organ development trait, TO:0000163 - auxin sensitivity, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0002672 - auxin content, TO:0000511 - phosphorus uptake, TO:0002693 - gravity response trait	PO:0007519 - 5 root hair formation stage , PO:0007600 - floral organ differentiation stage , PO:0004705 - stamen primordium , PO:0004703 - carpel primordium , PO:0025477 - floral organ primordium 
11917	_	OsLAX2, OsRAU2, OsAUX3, LAX2, RAU2, AUX3	_	like aux1-2, related to AUX1-2, auxin transporter 3			3	AB275161. LOC_Os03g14080.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0244600	LOC_Os03g14080.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009624 - response to nematode, GO:0016021 - integral to membrane, GO:0048829 - root cap development, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0020148 - shoot apical meristem 
11918	_	OsLAX3, OsRAU3, OsAUX2, LAX3, RAU3, AUX2, OsAUX3, AUX3	_	like aux1-3, related to AUX1-3, auxin transporter 2		osaux3-1, osaux3-2	5	Q688J2. AB275162. OsAUX3 in Wang et al. 2019. GO:2000280: regulation of root development. GO:0035618: root hair. TO:0000995: aluminum content trait.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os05g0447200	LOC_Os05g37470.1, LOC_Os05g37470.3, LOC_Os05g37470.2				GO:0010541 - acropetal auxin transport, GO:0010328 - auxin influx transmembrane transporter activity, GO:0009921 - auxin efflux carrier complex, GO:0010044 - response to aluminum ion, GO:0048364 - root development, GO:0009629 - response to gravity, GO:0005886 - plasma membrane, GO:0006865 - amino acid transport, GO:0009734 - auxin mediated signaling pathway, GO:0015293 - symporter activity, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0002693 - gravity response trait, TO:0000656 - root development trait, TO:0000354 - aluminum sensitivity, TO:0001013 - lateral root number, TO:0000227 - root length, TO:0002665 - root hair length, TO:0002672 - auxin content	PO:0007520 - root development stage , PO:0020127 - primary root , PO:0020121 - lateral root 
11919	_	OsLAX4, OsRAU4, OsAUX4, LAX4, RAU4, AUX4	_	like aux1-4, related to AUX1-4, auxin transporter 4			10	Q7XGU4. AB275163. LOC_Os10g05690.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0147400	LOC_Os10g05690.1				GO:0009624 - response to nematode, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009734 - auxin mediated signaling pathway, GO:0015293 - symporter activity, GO:0048829 - root cap development, GO:0009629 - response to gravity, GO:0006865 - amino acid transport	TO:0000276 - drought tolerance, TO:0002693 - gravity response trait, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0020148 - shoot apical meristem 
11920	_	OsLAX5, OsAUX5, LAX5, AUX5	_	like aux1-5, auxin transporter 5			11	Q53JG7. GO:0060919:auxin influx. GO:0003333: amino acid transmembrane transport. GO:0060919: auxin influx. GO:0071555: cell wall organization. LOC_Os11g06820.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0169200 	LOC_Os11g06820.1				GO:0010583 - response to cyclopentenone, GO:0048829 - root cap development, GO:0016021 - integral to membrane, GO:0015293 - symporter activity, GO:0010328 - auxin influx transmembrane transporter activity, GO:0010311 - lateral root formation, GO:0009926 - auxin polar transport, GO:0009734 - auxin mediated signaling pathway, GO:0006865 - amino acid transport, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0006084 - acetyl-CoA metabolic process, GO:0005886 - plasma membrane, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0016132 - brassinosteroid biosynthetic process, GO:0009932 - cell tip growth, GO:0009825 - multidimensional cell growth, GO:0000271 - polysaccharide biosynthetic process, GO:0048767 - root hair elongation, GO:0016126 - sterol biosynthetic process, GO:0015171 - amino acid transmembrane transporter activity	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009049 - inflorescence 
11921	MDR4	OsABCB1, ABCB1, OsPGP1, OsMDR4	MULTIDRUG RESISTANCE 4	ABC transporter superfamily ABCB subgroup member 1, P-Glycoprotein 1, multidrug resistance 4	MULTIDRUG RESISTANCE 4		1	AJ535067. LOC_Os01g18670.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0290700	LOC_Os01g18670.1				GO:0005524 - ATP binding, GO:0009735 - response to cytokinin stimulus, GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process, GO:0010315 - auxin efflux, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0008559 - xenobiotic-transporting ATPase activity, GO:0009630 - gravitropism, GO:0048767 - root hair elongation, GO:0010540 - basipetal auxin transport	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	
11922	MDR6	OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2	MULTIDRUG RESISTANCE 6	ABC transporter superfamily ABCB subgroup member 2, P-Glycoprotein 2	MULTIDRUG RESISTANCE 6		1	AJ535071. LOC_Os01g34970.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0533900	LOC_Os01g34970.2, LOC_Os01g34970.1				GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane	TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
11923	MDR5	OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34	MULTIDRUG RESISTANCE 5	ABC transporter superfamily ABCB subgroup member 3, P-Glycoprotein 3, multidrug resistance 5, Iron-sulfur cluster protein 34	MULTIDRUG RESISTANCE 5		1	AJ535066. LOC_Os01g35030.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0534700	LOC_Os01g35030.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006200 - ATP catabolic process	TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
11924	MDR9	OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30	MULTIDRUG RESISTANCE 9	ABC transporter superfamily ABCB subgroup member 4, P-Glycoprotein 4, multidrug resistance 9, Iron-sulfur cluster protein 30	MULTIDRUG RESISTANCE 9		1	AJ535063. LOC_Os01g50080.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0695700	LOC_Os01g50080.1, LOC_Os01g50070.1				GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009010 - seed , PO:0001170 - seed development stage 
11925	MDR8	OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31	MULTIDRUG RESISTANCE 8	ABC transporter superfamily ABCB subgroup member 6, P-Glycoprotein 6, multidrug resistance 8, Iron-sulfur cluster protein 31	MULTIDRUG RESISTANCE 8		1	AJ535064. LOC_Os01g50160.	 Tolerance and resistance - Stress tolerance	Os01g0696600	LOC_Os01g50160.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
11926	MDR17	OsABCB7, ABCB7, OsPGP7, OsMDR17	MULTIDRUG RESISTANCE 17	ABC transporter superfamily ABCB subgroup member 7, P-Glycoprotein 7, multidrug resistance 17	MULTIDRUG RESISTANCE 17		1	LOC_Os01g52550	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0723800	LOC_Os01g52550.1				GO:0009651 - response to salt stress, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0010541 - acropetal auxin transport, GO:0009733 - response to auxin stimulus, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0010540 - basipetal auxin transport, GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
11927	MDR10	OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29	MULTIDRUG RESISTANCE 10	ABC transporter superfamily ABCB subgroup member 8, P-Glycoprotein 8, multidrug resistance 10, Iron-sulfur cluster protein 29	MULTIDRUG RESISTANCE 10		1	AJ535062. LOC_Os01g74470.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0976100	LOC_Os01g74470.1				GO:0006200 - ATP catabolic process, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	
11928	ABCB9	OsABCB9, OsPGP9, OsISC33	ABC TRANSPORTER B FAMILY MEMBER 9	ABC transporter superfamily ABCB subgroup member 9, P-Glycoprotein 9, Iron-sulfur cluster protein 33	ABC TRANSPORTER B FAMILY MEMBER 9		2	Q6YUU5. LOC_Os02g09720.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0190300	LOC_Os02g09720.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0010541 - acropetal auxin transport, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0010540 - basipetal auxin transport, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
11929	ABCB10	OsABCB10, OsPGP10	ABC TRANSPORTER B FAMILY MEMBER 10	ABC transporter superfamily ABCB subgroup member 10, P-Glycoprotein 10	ABC TRANSPORTER B FAMILY MEMBER 10		2	LOC_Os02g21750.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0323000	LOC_Os02g21750.1				GO:0009651 - response to salt stress, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process	TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence 
11930	MDR11	OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2	MULTIDRUG RESISTANCE 11	ABC transporter superfamily ABCB subgroup member 11, P-Glycoprotein 11, multidrug resistance 11	MULTIDRUG RESISTANCE 11		2	AJ535061. LOC_Os02g46680.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0693700	LOC_Os02g46680.1				GO:0010329 - auxin efflux transmembrane transporter activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005739 - mitochondrion, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010540 - basipetal auxin transport, GO:0010541 - acropetal auxin transport, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009049 - inflorescence 
11931	ABCB12	OsABCB12, OsPGP12, PGP12	ABC TRANSPORTER B FAMILY MEMBER 12	ABC transporter superfamily ABCB subgroup member 12, P-Glycoprotein 12	ABC TRANSPORTER B FAMILY MEMBER 12		3	LOC_Os03g08380. Os03g0181700 (not found in RapDB, Ncbi and UniProt).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0181675/Os03g0181750					GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	
11932	ABCB13	OsABCB13, OsPGP13	ABC TRANSPORTER B FAMILY MEMBER 13	ABC transporter superfamily ABCB subgroup member 13, P-Glycoprotein 13	ABC TRANSPORTER B FAMILY MEMBER 13		3	LOC_Os03g17180.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0280000	LOC_Os03g17180.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
11933	MDR13	OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2	MULTIDRUG RESISTANCE 13	ABC transporter superfamily ABCB subgroup member 14, P-Glycoprotein 14, multidrug resistance 13	MULTIDRUG RESISTANCE 13		4	AJ535059. LOC_Os04g38570.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0459000	LOC_Os04g38570.1, LOC_Os04g38570.2				GO:0048443 - stamen development, GO:0010540 - basipetal auxin transport, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0005524 - ATP binding, GO:0009640 - photomorphogenesis, GO:0008361 - regulation of cell size, GO:0009414 - response to water deprivation, GO:0009958 - positive gravitropism, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009637 - response to blue light, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0010541 - acropetal auxin transport	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	
11934	MDR1	OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125	MULTIDRUG RESISTANCE 1	ABC transporter superfamily ABCB subgroup member 15, P-Glycoprotein 15, multidrug resistance 1	MULTIDRUG RESISTANCE 1		4	AJ535069, AJ535070. MDR1 and MDR2 in Jasinski et al. 2003. LOC_Os04g40570. a mature anther-preferentially expressed gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0481700	LOC_Os04g40570.1				GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0005524 - ATP binding, GO:0010540 - basipetal auxin transport, GO:0010541 - acropetal auxin transport, GO:0009651 - response to salt stress, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009066 - anther 
11935	MDR12	OsABCB16, ABCB16, OsPGP16, OsMDR12	MULTIDRUG RESISTANCE 12	ABC transporter superfamily ABCB subgroup member 16, P-Glycoprotein 16, multidrug resistance 12	MULTIDRUG RESISTANCE 12		4	AJ535060. LOC_Os04g54930.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0642000	LOC_Os04g54930.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0008361 - regulation of cell size, GO:0009624 - response to nematode, GO:0009637 - response to blue light, GO:0009958 - positive gravitropism, GO:0048443 - stamen development, GO:0016021 - integral to membrane, GO:0010541 - acropetal auxin transport, GO:0010540 - basipetal auxin transport, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0009640 - photomorphogenesis	TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
11936	MDR3	OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1	MULTIDRUG RESISTANCE 3	ABC transporter superfamily ABCB subgroup member 17, P-Glycoprotein 17, multidrug resistance 3	MULTIDRUG RESISTANCE 3		5	AJ535068. LOC_Os05g04610.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0137200	LOC_Os05g04610.1				GO:0008559 - xenobiotic-transporting ATPase activity, GO:0016021 - integral to membrane, GO:0010540 - basipetal auxin transport, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0006200 - ATP catabolic process, GO:0010315 - auxin efflux, GO:0048767 - root hair elongation, GO:0009735 - response to cytokinin stimulus, GO:0009630 - gravitropism	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity	
11937	ABCB18	OsABCB18, OsPGP18, OsABCB18_1, OsABCB18_2	ABC TRANSPORTER B FAMILY MEMBER 18	ABC transporter superfamily ABCB subgroup member 18, P-Glycoprotein 18	ABC TRANSPORTER B FAMILY MEMBER 18		5	LOC_Os05g47490.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0548300	LOC_Os05g47490.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
11938	ABCB19	OsABCB19, OsPGP19	ABC TRANSPORTER B FAMILY MEMBER 19	ABC transporter superfamily ABCB subgroup member 19, P-Glycoprotein 19	ABC TRANSPORTER B FAMILY MEMBER 19		5	LOC_Os05g47500.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0548500	LOC_Os05g47500.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
11939	MDR15	OsABCB20, ABCB20, OsPGP20, OsMDR15	MULTIDRUG RESISTANCE 15	ABC transporter superfamily ABCB subgroup member 20, P-Glycoprotein 20, multidrug resistance 15	MULTIDRUG RESISTANCE 15		8	AJ535057. LOC_Os08g05690.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0153000	LOC_Os08g05690.1				GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance	
11940	MDR16	OsABCB21, ABCB21, OsPGP21, OsMDR16	MULTIDRUG RESISTANCE 16	ABC transporter superfamily ABCB subgroup member 21, P-Glycoprotein 21, multidrug resistance 16	MULTIDRUG RESISTANCE 16		8	AJ535056. LOC_Os08g05710.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0153200	LOC_Os08g05710.1				GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance	
11941	MDR14	OsABCB22, ABCB22, OsPGP22, OsMDR14	MULTIDRUG RESISTANCE 14	ABC transporter superfamily ABCB subgroup member 22, P-Glycoprotein 22, multidrug resistance 14	MULTIDRUG RESISTANCE 14		8	AJ535058. LOC_Os08g45030.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0564300	LOC_Os08g45030.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
11942	ABCB23	OsABCB23, OsISC32, OsATM3, ATM3	ABC TRANSPORTER B FAMILY MEMBER 23	ABC transporter superfamily ABCB subgroup member 23, Iron-sulfur cluster protein 32, ABC transporter of mitochondrion 3	ABC TRANSPORTER B FAMILY MEMBER 23		6	LOC_Os06g03770. the rice ortholog of Arabidopsis ATM3. GO:0072593: reactive oxygen species metabolic process. GO:0090351: seedling development.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os06g0128300	LOC_Os06g03770.1				GO:0051301 - cell division, GO:0046686 - response to cadmium ion, GO:0040014 - regulation of multicellular organism growth, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0010288 - response to lead ion, GO:0009941 - chloroplast envelope, GO:0006749 - glutathione metabolic process, GO:0006281 - DNA repair, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005743 - mitochondrial inner membrane, GO:0009555 - pollen development, GO:0009658 - chloroplast organization, GO:0050790 - regulation of catalytic activity, GO:0016021 - integral to membrane, GO:0006879 - cellular iron ion homeostasis, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0005524 - ATP binding, GO:0016226 - iron-sulfur cluster assembly, GO:0010431 - seed maturation, GO:0010073 - meristem maintenance, GO:0006801 - superoxide metabolic process, GO:0055072 - iron ion homeostasis, GO:0048527 - lateral root development, GO:0048364 - root development, GO:0045787 - positive regulation of cell cycle	TO:0006020 - shoot apical meristem development, TO:0000207 - plant height, TO:0002661 - seed maturation, TO:0000656 - root development trait, TO:0001012 - lateral root length, TO:0000227 - root length	PO:0007632 - seed maturation stage , PO:0007520 - root development stage , PO:0000016 - lateral root primordium , PO:0006085 - root meristem , PO:0020148 - shoot apical meristem 
11943	ABCB24	OsABCB24	ABC TRANSPORTER B FAMILY MEMBER 24	ABC transporter superfamily ABCB subgroup member 24	ABC TRANSPORTER B FAMILY MEMBER 24		1		 Biochemical character	Os01g0911300	LOC_Os01g68330.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006200 - ATP catabolic process		
11944	ABCB26	OsABCB26	ABC TRANSPORTER B FAMILY MEMBER 26	ABC transporter superfamily ABCB subgroup member 26	ABC TRANSPORTER B FAMILY MEMBER 26		7		 Biochemical character	Os07g0464600	LOC_Os07g28090.1				GO:0015421 - oligopeptide-transporting ATPase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane		
11945	ABCB27	OsABCB27	ABC TRANSPORTER B FAMILY MEMBER 27	ABC transporter superfamily ABCB subgroup member 27	ABC TRANSPORTER B FAMILY MEMBER 27		4		 Biochemical character	Os04g0413000	LOC_Os04g33700.1				GO:0010540 - basipetal auxin transport, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0010541 - acropetal auxin transport, GO:0016021 - integral to membrane, GO:0009941 - chloroplast envelope, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
11946	ABCA1	OsABCA1	ABC TRANSPORTER A FAMILY MEMBER 1	ABC transporter superfamily ABCA subgroup member 1	ABC TRANSPORTER A FAMILY MEMBER 1		2		 Biochemical character	Os02g0211000	LOC_Os02g11960.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process		
11947	ABCA2	OsABCA2, OsISC27	ABC TRANSPORTER A FAMILY MEMBER 2	ABC transporter superfamily ABCA subgroup member 2, Iron-sulfur cluster protein 27	ABC TRANSPORTER A FAMILY MEMBER 2		6		 Biochemical character	Os06g0589300	LOC_Os06g38950.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
11948	ABCA3	OsABCA3	ABC TRANSPORTER A FAMILY MEMBER 3	ABC transporter superfamily ABCA subgroup member 3	ABC TRANSPORTER A FAMILY MEMBER 3		8		 Biochemical character	Os08g0398000	LOC_Os08g30740.1				GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane, GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
11949	ABCA4	OsABCA4	ABC TRANSPORTER A FAMILY MEMBER 4	ABC transporter superfamily ABCA subgroup member 4	ABC TRANSPORTER A FAMILY MEMBER 4		8		 Biochemical character	Os08g0398300	LOC_Os08g30770.1				GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
11950	ABCA5	OsABCA5	ABC TRANSPORTER A FAMILY MEMBER 5	ABC transporter superfamily ABCA subgroup member 5	ABC TRANSPORTER A FAMILY MEMBER 5		8		 Biochemical character	Os08g0398350	LOC_Os08g30780.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
11951	ABCA6	OsABCA6	ABC TRANSPORTER A FAMILY MEMBER 6	ABC transporter superfamily ABCA subgroup member 6	ABC TRANSPORTER A FAMILY MEMBER 6		9			Os09g0360900					GO:0005524 - ATP binding		
11952	MRP1	OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1	ABC transporter superfamily ABCC subgroup member 1, multidrug resistance-associated protein 1, C-type ATP-binding cassette transporter 1, C-type ABC transporter 1	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1	osabcc1-1, osabcc1-2, has1	4	AJ535081. LOC_Os04g52900. TO:0006054: arsenic concentration. ABC transporter (Cd/Pb/As transport).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0620000	LOC_Os04g52900.2, LOC_Os04g52900.1				GO:0009705 - plant-type vacuole membrane, GO:0046685 - response to arsenic		
11953	MRP2	OsABCC2, OsMRP2	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2	ABC transporter superfamily ABCC subgroup member 2, multidrug resistance-associated protein 2	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2		1	AJ535080.	 Biochemical character	Os01g0902100	LOC_Os01g67580.1				GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process		
11954	MRP3	OsABCC3, OsMRP3	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 3	ABC transporter superfamily ABCC subgroup member 3, multidrug resistance-associated protein 3	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 3		1	AJ535079.	 Biochemical character	Os01g0173900	LOC_Os01g07870.1				GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
11955	MRP4	OsABCC4, ABCC4, OsMRP4	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4	ABC transporter superfamily ABCC subgroup member 4, multidrug resistance-associated protein 4	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4		2	AJ535078. LOC_Os02g18700. Os02g0288733 (in Rap2 (build4)).	 Biochemical character	Os02g0288700/Os02g0288766					GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances		
11956	MRP5	OsABCC5, OsMRP5	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5	ABC transporter superfamily ABCC subgroup member 5, multidrug resistance-associated protein 5	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5		2	AJ535077.	 Biochemical character	Os02g0288400	LOC_Os02g18670.1				GO:0016021 - integral to membrane, GO:0051707 - response to other organism, GO:0005524 - ATP binding, GO:0015431 - glutathione S-conjugate-exporting ATPase activity, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0048046 - apoplast, GO:0006200 - ATP catabolic process, GO:0010290 - chlorophyll catabolite transporter activity, GO:0000325 - plant-type vacuole		
11957	MRP6	OsABCC6, OsMRP6	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6	ABC transporter superfamily ABCC subgroup member 6, multidrug resistance-associated protein 6	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6		4	AJ535076. Os04g0588600 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character						GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
11958	MRP7	OsABCC7, OsMRP7	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7	ABC transporter superfamily ABCC subgroup member 7, multidrug resistance-associated protein 7	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7		4	AJ535075.	 Biochemical character	Os04g0588700	LOC_Os04g49900.1				GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
11959	MRP8	OsABCC8, OsMRP8a, OsMRP8a, OsMRP8	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 8	ABC transporter superfamily ABCC subgroup member 8, multidrug resistance-associated protein 8	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 8		1	AJ535074. LOC_Os01g25386. Os01g0356000 (in Rap1 (build3)).	 Biochemical character	Os01g0356400 	LOC_Os01g25386.1				GO:0000325 - plant-type vacuole, GO:0008517 - folic acid transporter activity, GO:0005886 - plasma membrane, GO:0010118 - stomatal movement, GO:0016887 - ATPase activity, GO:0009624 - response to nematode, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0015884 - folic acid transport, GO:0005774 - vacuolar membrane		
11960	MRP9	OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 9	ABC transporter superfamily ABCC subgroup member 9, multidrug resistance-associated protein 9	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 9		4	LOC_Os04g13210. AJ535073. OsABCC14 in Wang et al. 2017.	 Biochemical character	Os04g0209200	LOC_Os04g13210.1				GO:0009624 - response to nematode, GO:0015884 - folic acid transport, GO:0010118 - stomatal movement, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0008517 - folic acid transporter activity, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0000325 - plant-type vacuole		
11961	MRP10	OsABCC10, OsMRP10	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 10	ABC transporter superfamily ABCC subgroup member 10, multidrug resistance-associated protein 10	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 10		4	AJ535072.	 Biochemical character	Os04g0209300	LOC_Os04g13220.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane		
11962	MRP11	OsABCC11, OsMRP11	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 11	ABC transporter superfamily ABCC subgroup member 11, multidrug resistance-associated protein 11	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 11		6	AJ535215.	 Biochemical character	Os06g0561800	LOC_Os06g36650.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
11963	MRP12	OsABCC12, OsMRP12	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 12	ABC transporter superfamily ABCC subgroup member 12, multidrug resistance-associated protein 12	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 12		6			Os06g0184700	LOC_Os06g08560.1				GO:0005886 - plasma membrane, GO:0005525 - GTP binding		
11964	MRP13	OsABCC13, OsMRP13, OsMRP5	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 13	ABC transporter superfamily ABCC subgroup member 13, multidrug resistance-associated protein 13	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 13		3	OsMRP5 in Zhao et al. 2013 and Xu et al. 2009. LOC_Os03g04920. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character	Os03g0142800	LOC_Os03g04920.1				GO:0008281 - sulfonylurea receptor activity, GO:0030007 - cellular potassium ion homeostasis, GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0000325 - plant-type vacuole, GO:0009737 - response to abscisic acid stimulus, GO:0006793 - phosphorus metabolic process, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0005774 - vacuolar membrane	TO:0000615 - abscisic acid sensitivity, TO:0002666 - seed phosphorus content	
11965	MRP14	OsABCC14, OsMRP14, OsABCC14-1, OsABCC14-2	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 14	ABC transporter superfamily ABCC subgroup member 14, multidrug resistance-associated protein 14	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 14		5		 Biochemical character	Os05g0196100	LOC_Os05g10730.3, LOC_Os05g10730.2, LOC_Os05g10730.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
11966	MRP15	OsABCC15, OsMRP15	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 15	ABC transporter superfamily ABCC subgroup member 15, multidrug resistance-associated protein 15	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 15		6		 Biochemical character	Os06g0158900	LOC_Os06g06440.1				GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
11967	MRP16	OsABCC16, OsMRP16	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 16	ABC transporter superfamily ABCC subgroup member 16, multidrug resistance-associated protein 16	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 16		11		 Biochemical character	Os11g0155600	LOC_Os11g05700.1				GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane		
11968	MRP17	OsABCC17, OsMRP17	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 17	ABC transporter superfamily ABCC subgroup member 17, multidrug resistance-associated protein 17	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 17		12		 Biochemical character	Os12g0562700	LOC_Os12g37580.1				GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
11969	ABCD1	OsABCD1, OsABCD1_1, OsABCD1_2	ABC TRANSPORTER D FAMILY MEMBER 1	ABC transporter superfamily ABCD subgroup member 1	ABC TRANSPORTER D FAMILY MEMBER 1		1		 Biochemical character	Os01g0218700	LOC_Os01g11946.2, LOC_Os01g11946.1				GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0009507 - chloroplast, GO:0016021 - integral to membrane		
11970	ABCD2	OsABCD2	ABC TRANSPORTER D FAMILY MEMBER 2	ABC transporter superfamily ABCD subgroup member 2	ABC TRANSPORTER D FAMILY MEMBER 2		1		 Biochemical character	Os01g0966100	LOC_Os01g73530.2, LOC_Os01g73530.1				GO:0006200 - ATP catabolic process, GO:0015916 - fatty acyl coenzyme A transport, GO:0046861 - glyoxysomal membrane, GO:0006635 - fatty acid beta-oxidation, GO:0010030 - positive regulation of seed germination, GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
11971	GS5	OsSCP26, SCP26, OsGS5	GRAIN SIZE 5	serine carboxypeptidase 26, Grain Size 5	SERINE CARBOXYPEPTIDASE 26	GS5-1, GS5-2, GS5-WG, GS5-MG, GS5-NG, GS5-A, GS5-B	5	LOC_Os05g06660. JN256055(H94 mRNA), JN256056(Zhenshan 97 mRNA), JN256057(H94 Genomic DNA), JN256058(Zhenshan 97, Genomic DNA). SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character,  Seed - Morphological traits - Grain shape,  Character as QTL - Grain quality,  Character as QTL - Yield and productivity	Os05g0158500	LOC_Os05g06660.2, LOC_Os05g06660.1				GO:0004185 - serine-type carboxypeptidase activity, GO:0006508 - proteolysis	TO:0000590 - grain weight, TO:0000402 - grain width, TO:0002661 - seed maturation, TO:0000397 - grain size, TO:0000734 - grain length	
11972	ABCD3	OsABCD3	ABC TRANSPORTER D FAMILY MEMBER 3	ABC transporter superfamily ABCD subgroup member 3	ABC TRANSPORTER D FAMILY MEMBER 3		5		 Biochemical character	Os05g0107600	LOC_Os05g01700.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0046861 - glyoxysomal membrane, GO:0015916 - fatty acyl coenzyme A transport, GO:0010030 - positive regulation of seed germination, GO:0006635 - fatty acid beta-oxidation, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
11973	ABCE1	OsABCE1, OsABCE1_1, OsABCE1_2	ABC TRANSPORTER E FAMILY MEMBER 1	ABC transporter superfamily ABCE subgroup member 1	ABC TRANSPORTER E FAMILY MEMBER 1		2		 Biochemical character	Os02g0282900	LOC_Os02g18180.1				GO:0005524 - ATP binding, GO:0009055 - electron carrier activity, GO:0051536 - iron-sulfur cluster binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process		
11974	ABCE2	OsABCE2, RLI	ABC TRANSPORTER E FAMILY MEMBER 2	ABC transporter superfamily ABCE subgroup member 2, RNase L inhibitor	ABC TRANSPORTER E FAMILY MEMBER 2		11	AY093583.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0546000	LOC_Os11g34350.1				GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0009055 - electron carrier activity, GO:0051536 - iron-sulfur cluster binding, GO:0005524 - ATP binding	TO:0000163 - auxin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
11975	ABCF1	OsABCF1, OsABCF1_1, OsABCF1_2, OsABCF1_3	ABC TRANSPORTER F FAMILY MEMBER 1	ABC transporter superfamily ABCF subgroup member 1	ABC TRANSPORTER F FAMILY MEMBER 1		2			Os02g0826500	LOC_Os02g58020.3, LOC_Os02g58020.2, LOC_Os02g58020.1						
11976	ABCF2	OsABCF2	ABC TRANSPORTER F FAMILY MEMBER 2	ABC transporter superfamily ABCF subgroup member 2	ABC TRANSPORTER F FAMILY MEMBER 2		3		 Biochemical character	Os03g0441500	LOC_Os03g32630.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
11977	ABCF3	OsABCF3	ABC TRANSPORTER F FAMILY MEMBER 3	ABC transporter superfamily ABCF subgroup member 3	ABC TRANSPORTER F FAMILY MEMBER 3		4			Os04g0658400	LOC_Os04g56330.1						
11978	ABCF4	OsABCF4	ABC TRANSPORTER F FAMILY MEMBER 4	ABC transporter superfamily ABCF subgroup member 4	ABC TRANSPORTER F FAMILY MEMBER 4		8		 Biochemical character	Os08g0564100	LOC_Os08g45010.1				GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
11979	ABCF5	OsABCF5, OsABCF5_1, OsABCF5_2, OsABCF5_3	ABC TRANSPORTER F FAMILY MEMBER 5	ABC transporter superfamily ABCF subgroup member 5	ABC TRANSPORTER F FAMILY MEMBER 5		9		 Biochemical character	Os09g0572400	LOC_Os09g39910.3, LOC_Os09g39910.2, LOC_Os09g39910.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
11980	ABCF6	OsABCF6	ABC TRANSPORTER F FAMILY MEMBER 6	ABC transporter superfamily ABCF subgroup member 6	ABC TRANSPORTER F FAMILY MEMBER 6		11		 Biochemical character	Os11g0603200	LOC_Os11g39020.1				GO:0006200 - ATP catabolic process, GO:0009624 - response to nematode, GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
11981	ABCG1	OsABCG1	ABC TRANSPORTER G FAMILY MEMBER 1	ABC transporter superfamily ABCG subgroup member 1	ABC TRANSPORTER G FAMILY MEMBER 1		1			Os01g0121600	LOC_Os01g03144.1						
11982	ABCG2	OsABCG2	ABC TRANSPORTER G FAMILY MEMBER 2	ABC transporter superfamily ABCG subgroup member 2	ABC TRANSPORTER G FAMILY MEMBER 2		1		 Biochemical character	Os01g0615500	LOC_Os01g42900.1				GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
11983	ABCG4	OsABCG4	ABC TRANSPORTER G FAMILY MEMBER 4	ABC transporter superfamily ABCG subgroup member 4	ABC TRANSPORTER G FAMILY MEMBER 4		3		 Biochemical character	Os03g0157400	LOC_Os03g06139.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005886 - plasma membrane		
11984	ABCG7	OsABCG7, OsABCG7_1, OsABCG7_2	ABC TRANSPORTER G FAMILY MEMBER 7	ABC transporter superfamily ABCG subgroup member 7	ABC TRANSPORTER G FAMILY MEMBER 7		3		 Biochemical character	Os03g0859500	LOC_Os03g64200.2, LOC_Os03g64200.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
11985	ABCG8	OsABCG8	ABC TRANSPORTER G FAMILY MEMBER 8	ABC transporter superfamily ABCG subgroup member 8	ABC TRANSPORTER G FAMILY MEMBER 8		4		 Biochemical character	Os04g0194500	LOC_Os04g11820.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane		
11986	ABCG9	OsABCG9	ABC TRANSPORTER G FAMILY MEMBER 9	ABC transporter superfamily ABCG subgroup member 9	ABC TRANSPORTER G FAMILY MEMBER 9		4		 Biochemical character	Os04g0528300	LOC_Os04g44610.1				GO:0006200 - ATP catabolic process, GO:0009897 - external side of plasma membrane, GO:0080051 - cutin transport, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
11987	ABCG10	OsABCG10	ABC TRANSPORTER G FAMILY MEMBER 10	ABC transporter superfamily ABCG subgroup member 10	ABC TRANSPORTER G FAMILY MEMBER 10		5		 Biochemical character	Os05g0120000	LOC_Os05g02870.1				GO:0005886 - plasma membrane, GO:0005775 - vacuolar lumen, GO:0007034 - vacuolar transport, GO:0009624 - response to nematode, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
11988	ABCG11	OsABCG11	ABC TRANSPORTER G FAMILY MEMBER 11	ABC transporter superfamily ABCG subgroup member 11	ABC TRANSPORTER G FAMILY MEMBER 11		5		 Biochemical character	Os05g0120200	LOC_Os05g02890.1				GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane, GO:0007034 - vacuolar transport, GO:0009624 - response to nematode, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0005775 - vacuolar lumen		
11989	ABCG12	OsABCG12	ABC TRANSPORTER G FAMILY MEMBER 12	ABC transporter superfamily ABCG subgroup member 12	ABC TRANSPORTER G FAMILY MEMBER 12		5	GO:0080167:response to karrikin.	 Biochemical character	Os05g0222200	LOC_Os05g13520.1				GO:0010025 - wax biosynthetic process, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
11990	ABCG13	OsABCG13, OsABCG13_1, OsABCG13_2	ABC TRANSPORTER G FAMILY MEMBER 13	ABC transporter superfamily ABCG subgroup member 13	ABC TRANSPORTER G FAMILY MEMBER 13		5		 Biochemical character	Os05g0384600	LOC_Os05g31910.2, LOC_Os05g31910.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0016020 - membrane		
11991	ABCG14	OsABCG14	ABC TRANSPORTER G FAMILY MEMBER 14	ABC transporter superfamily ABCG subgroup member 14	ABC TRANSPORTER G FAMILY MEMBER 14		6		 Biochemical character	Os06g0503100	LOC_Os06g30730.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006200 - ATP catabolic process		
11992	ABCG15	OsABCG15, PDA, PDA1, OsABCG15/PDA1	ABC TRANSPORTER G FAMILY MEMBER 15	ABC transporter superfamily ABCG subgroup member 15, post-meiotic deficient anther1, Postmeiotic Deficient Anther1, ATP binding cassette G15, ATP binding cassette subfamily G 15	ABC TRANSPORTER G FAMILY MEMBER 15	abcg15, pda1, osabcg15	6	LOC_Os06g40550. TO:1000022: anther morphology trait.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0607700	LOC_Os06g40550.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0010584 - pollen exine formation, GO:0016887 - ATPase activity, GO:0005886 - plasma membrane, GO:0009555 - pollen development, GO:0048653 - anther development, GO:0006869 - lipid transport	TO:0000187 - anther color, TO:0000215 - stamen anatomy and morphology trait, TO:0000531 - anther length, TO:0000437 - male sterility, TO:0000245 - pollen free	PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0025313 - tapetum 
11993	ABCG16	OsABCG16, OsABCG16_1, OsABCG16_2, OsSTA183	ABC TRANSPORTER G FAMILY MEMBER 16	ABC transporter superfamily ABCG subgroup member 16	ABC TRANSPORTER G FAMILY MEMBER 16		6	LOC_Os06g51460. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0731200	LOC_Os06g51460.2, LOC_Os06g51460.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		PO:0009066 - anther 
11994	ABCG17	OsABCG17	ABC TRANSPORTER G FAMILY MEMBER 17	ABC transporter superfamily ABCG subgroup member 17	ABC TRANSPORTER G FAMILY MEMBER 17		7	Similar to white-brown-complex ABC transporter family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0288700	LOC_Os07g18874.1				GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
11995	ABCG18	OsABCG18	ABC TRANSPORTER G FAMILY MEMBER 18	ABC transporter superfamily ABCG subgroup member 18	ABC TRANSPORTER G FAMILY MEMBER 18		8		 Biochemical character	Os08g0167000	LOC_Os08g07010.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
11996	ABCG19	OsABCG19, OsABCG19_1, OsABCG19_2	ABC TRANSPORTER G FAMILY MEMBER 19	ABC transporter superfamily ABCG subgroup member 19	ABC TRANSPORTER G FAMILY MEMBER 19		9		 Biochemical character	Os09g0125900	LOC_Os09g03939.2, LOC_Os09g03939.1				GO:0016020 - membrane, GO:0017111 - nucleoside-triphosphatase activity, GO:0005524 - ATP binding		
11997	ABCG20	OsABCG20	ABC TRANSPORTER G FAMILY MEMBER 20	ABC transporter superfamily ABCG subgroup member 20	ABC TRANSPORTER G FAMILY MEMBER 20		9		 Biochemical character	Os09g0250800	LOC_Os09g07700.1, LOC_Os09g07670.1				GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process		
11998	ABCG21	OsABCG21, STR1	ABC TRANSPORTER G FAMILY MEMBER 21	ABC transporter superfamily ABCG subgroup member 21, Medicago truncatula stunted arbuscule 1	ABC TRANSPORTER G FAMILY MEMBER 21	str1-1, str1-2	9	JN608807.	 Biochemical character,  Vegetative organ - Root	Os09g0401100	LOC_Os09g23640.1				GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process		
11999	ABCG22	OsABCG22	ABC TRANSPORTER G FAMILY MEMBER 22	ABC transporter superfamily ABCG subgroup member 22	ABC TRANSPORTER G FAMILY MEMBER 22		9		 Biochemical character	Os09g0472100	LOC_Os09g29660.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016020 - membrane		
12000	ABCG23	OsABCG23	ABC TRANSPORTER G FAMILY MEMBER 23	ABC transporter superfamily ABCG subgroup member 23	ABC TRANSPORTER G FAMILY MEMBER 23		9		 Biochemical character	Os09g0472200	LOC_Os09g29670.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0006200 - ATP catabolic process		
12001	ABCG24	OsABCG24	ABC TRANSPORTER G FAMILY MEMBER 24	ABC transporter superfamily ABCG subgroup member 24	ABC TRANSPORTER G FAMILY MEMBER 24		10		 Biochemical character	Os10g0163290	LOC_Os10g08014.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016020 - membrane, GO:0016887 - ATPase activity		
12002	ABCG25	OsABCG25, OsABCG25_1, OsABCG25_2	ABC TRANSPORTER G FAMILY MEMBER 25	ABC transporter superfamily ABCG subgroup member 25	ABC TRANSPORTER G FAMILY MEMBER 25		10		 Biochemical character	Os10g0442900	LOC_Os10g30610.2, LOC_Os10g30610.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process		
12003	ABCG26	OsABCG26	ABC TRANSPORTER G FAMILY MEMBER 26	ABC transporter superfamily ABCG subgroup member 26, ATP binding cassette transporter G26, ATP Binding Cassette G26	ABC TRANSPORTER G FAMILY MEMBER 26	osabcg26	10	LOC_Os10g35180.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0494300	LOC_Os10g35180.1				GO:0005524 - ATP binding, GO:0048653 - anther development, GO:0005886 - plasma membrane, GO:0006869 - lipid transport, GO:0009897 - external side of plasma membrane, GO:0080051 - cutin transport, GO:0009875 - pollen-pistil interaction, GO:0010584 - pollen exine formation, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process	TO:0000437 - male sterility	PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009066 - anther , PO:0009029 - stamen , PO:0000002 - anther wall 
12004	ABCG27	OsABCG27	ABC TRANSPORTER G FAMILY MEMBER 27	ABC transporter superfamily ABCG subgroup member 27	ABC TRANSPORTER G FAMILY MEMBER 27		11	GO:0080168:abscisic acid transport.	 Biochemical character	Os11g0177400	LOC_Os11g07600.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
12005	ABCG28	OsABCG28, OsSTA255	ABC TRANSPORTER G FAMILY MEMBER 28	ABC transporter superfamily ABCG subgroup member 28	ABC TRANSPORTER G FAMILY MEMBER 28		11	LOC_Os11g22350. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0416900	LOC_Os11g22350.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		PO:0009066 - anther 
12006	ABCG29	OsABCG29	ABC TRANSPORTER G FAMILY MEMBER 29	ABC transporter superfamily ABCG subgroup member 29	ABC TRANSPORTER G FAMILY MEMBER 29		12		 Biochemical character	Os12g0409700	LOC_Os12g22110.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016887 - ATPase activity		
12007	ABCG30	OsABCG30	ABC TRANSPORTER G FAMILY MEMBER 30	ABC transporter superfamily ABCG subgroup member 30	ABC TRANSPORTER G FAMILY MEMBER 30		12		 Biochemical character	Os12g0411700	LOC_Os12g22284.1				GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
12008	PDR16	OsABCG32, OsPDR16	PLEIOTROPIC DRUG RESISTANCE 16	ABC transporter superfamily ABCG subgroup member 32, pleiotropic drug resistance 16	PLEIOTROPIC DRUG RESISTANCE 16		1		 Biochemical character	Os01g0342700	LOC_Os01g24010.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016020 - membrane		
12009	PDR14	OsABCG33, OsPDR14	PLEIOTROPIC DRUG RESISTANCE 14	ABC transporter superfamily ABCG subgroup member 33, pleiotropic drug resistance 14	PLEIOTROPIC DRUG RESISTANCE 14		1	LOC_Os01g33260. Os01g0516800 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character	Os01g0516900 	LOC_Os01g33260.1, LOC_Os01g33240.1				GO:0006200 - ATP catabolic process, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0016887 - ATPase activity		
12010	PDR10	OsABCG34, OsPDR10, OsPDR1	PLEIOTROPIC DRUG RESISTANCE 10	ABC transporter superfamily ABCG subgroup member 34, pleiotropic drug resistance 10, pleiotropic drug resistance 1	PLEIOTROPIC DRUG RESISTANCE 10		1	AJ535045. Q7PC80. BK001015. 	 Biochemical character	Os01g0609000	LOC_Os01g42350.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0006810 - transport		
12011	PDR11	OsABCG35, OsPDR11, OsPDR2	PLEIOTROPIC DRUG RESISTANCE 11	ABC transporter superfamily ABCG subgroup member 35, pleiotropic drug resistance 11, pleiotropic drug resistance 2	PLEIOTROPIC DRUG RESISTANCE 11		1	Q8GU92. AJ535044. BK001016.	 Biochemical character	Os01g0609200	LOC_Os01g42370.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0006810 - transport, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
12012	PDR15	OsABCG38, OsPDR15	PLEIOTROPIC DRUG RESISTANCE 15	ABC transporter superfamily ABCG subgroup member 38, pleiotropic drug resistance 15	PLEIOTROPIC DRUG RESISTANCE 15		1	Q7FMW4. AJ535041.	 Biochemical character	Os01g0724500	LOC_Os01g52560.1				GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
12013	PDR7	OsABCG39, OsPDR7	PLEIOTROPIC DRUG RESISTANCE 7	ABC transporter superfamily ABCG subgroup member 39, pleiotropic drug resistance 7	PLEIOTROPIC DRUG RESISTANCE 7		2	Q8GU88. AJ535048.	 Biochemical character	Os02g0208300	LOC_Os02g11760.1				GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0006810 - transport, GO:0016887 - ATPase activity		
12014	_	OsABCG40, OsPDR4, PDR4	_	ABC transporter superfamily ABCG subgroup member 40, pleiotropic drug resistance 4	_		2		 Biochemical character	Os02g0318500	LOC_Os02g21340.1				GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
12015	PDR2	ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2	PLEIOTROPIC DRUG RESISTANCE 2	ABC transporter superfamily ABCG subgroup member 41, pleiotropic drug resistance 2	PLEIOTROPIC DRUG RESISTANCE 2		2	LOC_Os02g32690. AJ535053.	 Biochemical character	Os02g0528900	LOC_Os02g32690.2, LOC_Os02g32690.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
12016	PDR12	OsABCG42, OsPDR12, OsABCG42_1, OsABCG42_2	PLEIOTROPIC DRUG RESISTANCE 12	ABC transporter superfamily ABCG subgroup member 42, pleiotropic drug resistance 12	PLEIOTROPIC DRUG RESISTANCE 12		6	Q5Z9S8. AJ535043.	 Biochemical character	Os06g0554800	LOC_Os06g36090.2, LOC_Os06g36090.1				GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
12017	PDR17	OsABCG44, OsPDR17	PLEIOTROPIC DRUG RESISTANCE 17	ABC transporter superfamily ABCG subgroup member 44, pleiotropic drug resistance 17	PLEIOTROPIC DRUG RESISTANCE 17		8		 Biochemical character	Os08g0384500	LOC_Os08g29570.1				GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
12018	PDR1	OsABCG45, OsPDR1, FCO1	PLEIOTROPIC DRUG RESISTANCE 1	ABC transporter superfamily ABCG subgroup member 45, pleiotropic drug resistance 1, Functioning in Cesium Over-transport 1	PLEIOTROPIC DRUG RESISTANCE 1		8	AJ535054.	 Biochemical character	Os08g0544400	LOC_Os08g43120.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0030001 - metal ion transport, GO:0016020 - membrane, GO:0006810 - transport, GO:0006200 - ATP catabolic process		PO:0009005 - root 
12019	PDR21	OsABCG46, OsPDR21	PLEIOTROPIC DRUG RESISTANCE 21	ABC transporter superfamily ABCG subgroup member 46, pleiotropic drug resistance 21	PLEIOTROPIC DRUG RESISTANCE 21		9	C7J6G6. LOC_Os09g16290. Os09g0332360 (in Rap2 (build4)).	 Biochemical character	Os09g0332300 	LOC_Os09g16290.1				GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
12020	PDR19	OsABCG47, OsPDR19	PLEIOTROPIC DRUG RESISTANCE 19	ABC transporter superfamily ABCG subgroup member 47, pleiotropic drug resistance 19	PLEIOTROPIC DRUG RESISTANCE 19		9	GO:0080168:abscisic acid transport.	 Biochemical character	Os09g0333000	LOC_Os09g16380.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0015692 - lead ion transport, GO:0006200 - ATP catabolic process, GO:0010193 - response to ozone		
12021	PDR3	OsABCG48, OsPDR3	PLEIOTROPIC DRUG RESISTANCE 3	ABC transporter superfamily ABCG subgroup member 48, pleiotropic drug resistance 3	PLEIOTROPIC DRUG RESISTANCE 3		11	AJ535052.	 Biochemical character	Os11g0587600	LOC_Os11g37700.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016020 - membrane		
12022	PDR22	OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2	PLEIOTROPIC DRUG RESISTANCE 22	ABC transporter superfamily ABCG subgroup member 49, pleiotropic drug resistance 22	PLEIOTROPIC DRUG RESISTANCE 22		12	LOC_Os12g13720. Q2QV81.		Os12g0239900	LOC_Os12g13720.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
12023	PDR23	OsABCG50, OsPDR23, OsABCG50_1, OsABCG50_2	PLEIOTROPIC DRUG RESISTANCE 23	ABC transporter superfamily ABCG subgroup member 50, pleiotropic drug resistance 23	PLEIOTROPIC DRUG RESISTANCE 23		12		 Biochemical character	Os12g0512700	LOC_Os12g32820.2, LOC_Os12g32820.1				GO:0006200 - ATP catabolic process, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
12024	ABCI1	OsABCI1	ABC TRANSPORTER I FAMILY MEMBER 1	ABC transporter superfamily ABCI subgroup member 1	ABC TRANSPORTER I FAMILY MEMBER 1		4		 Biochemical character	Os04g0627200	LOC_Os04g53550.1				GO:0017004 - cytochrome complex assembly, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0006810 - transport, GO:0030288 - outer membrane-bounded periplasmic space, GO:0005215 - transporter activity		
12025	ABCI2	OsABCI2	ABC TRANSPORTER I FAMILY MEMBER 2	ABC transporter superfamily ABCI subgroup member 2	ABC TRANSPORTER I FAMILY MEMBER 2		Mt	LOC_Osm1g00200.1	 Biochemical character		LOC_Osm1g00200				GO:0016020 - membrane, GO:0017004 - cytochrome complex assembly, GO:0008535 - respiratory chain complex IV assembly, GO:0005739 - mitochondrion, GO:0015232 - heme transporter activity		
12026	ABCI3	OsABCI3	ABC TRANSPORTER I FAMILY MEMBER 3	ABC transporter superfamily ABCI subgroup member 3	ABC TRANSPORTER I FAMILY MEMBER 3		12	CCM subgroup. LOC_Os12g34010. Os12g0523900 (not found in RapDB, Ncbi and UniProt).	 Biochemical character		LOC_Os12g34010				GO:0015232 - heme transporter activity, GO:0016020 - membrane, GO:0008535 - respiratory chain complex IV assembly, GO:0017004 - cytochrome complex assembly		
12027	ABCI3_1	OsABCI3_1, OsABCI3_2, OsISC17	ABC TRANSPORTER I FAMILY MEMBER 3_1	ABC transporter superfamily ABCI subgroup member 3_1, Iron-sulfur cluster protein 17	ABC TRANSPORTER I FAMILY MEMBER 3_1		3	subgroup ISB.	 Biochemical character	Os03g0332700	LOC_Os03g21490.2, LOC_Os03g21490.1				GO:0010027 - thylakoid membrane organization, GO:0006200 - ATP catabolic process, GO:0009793 - embryonic development ending in seed dormancy, GO:0016226 - iron-sulfur cluster assembly, GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009570 - chloroplast stroma		
12028	ABCI4	OsABCI4, OsISC18	ABC TRANSPORTER I FAMILY MEMBER 4	ABC transporter superfamily ABCI subgroup member 4, Iron-sulfur cluster protein 18	ABC TRANSPORTER I FAMILY MEMBER 4		1		 Biochemical character	Os01g0127300	LOC_Os01g03650.1				GO:0016226 - iron-sulfur cluster assembly, GO:0010027 - thylakoid membrane organization, GO:0009507 - chloroplast, GO:0009793 - embryonic development ending in seed dormancy		
12029	ABCI5	OsABCI5, OsISC16	ABC TRANSPORTER I FAMILY MEMBER 5	ABC transporter superfamily ABCI subgroup member 5, Iron-sulfur cluster protein 16	ABC TRANSPORTER I FAMILY MEMBER 5		1		 Biochemical character	Os01g0830000	LOC_Os01g61400.1				GO:0009507 - chloroplast, GO:0006879 - cellular iron ion homeostasis, GO:2000030 - regulation of response to red or far red light, GO:0016226 - iron-sulfur cluster assembly		
12030	ABCI6	OsABCI6, OsABCI7, ABCI7	ABC TRANSPORTER I FAMILY MEMBER 6	ABC transporter superfamily ABCI subgroup member 6	ABC TRANSPORTER I FAMILY MEMBER 6		1	LOC_Os01g56400. OsABCI7 in Zeng et al. 2017.	 Biochemical character	Os01g0770500	LOC_Os01g56400.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0009941 - chloroplast envelope		
12031	ABCI7	OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2	ABC TRANSPORTER I FAMILY MEMBER 7	ABC transporter superfamily ABCI subgroup member 7	ABC TRANSPORTER I FAMILY MEMBER 7	abci8	11	LOC_Os11g29850. OsABCI8 in Zeng et al. 2017. TO:0020089: iron content.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os11g0490800	LOC_Os11g29850.2, LOC_Os11g29850.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006826 - iron ion transport, GO:0009507 - chloroplast, GO:0009628 - response to abiotic stimulus, GO:0009657 - plastid organization, GO:0009658 - chloroplast organization, GO:0009536 - plastid, GO:0010027 - thylakoid membrane organization, GO:0015995 - chlorophyll biosynthetic process, GO:0033013 - tetrapyrrole metabolic process, GO:0055072 - iron ion homeostasis	TO:0000293 - chlorophyll-a content, TO:0000168 - abiotic stress trait, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content	
12032	ABCI8	OsABCI8, OsABCI9, ABCI9	ABC TRANSPORTER I FAMILY MEMBER 8	ABC transporter superfamily ABCI subgroup member 8	ABC TRANSPORTER I FAMILY MEMBER 8		5	LOC_Os05g33230. OsABCI9 in Zeng et al. 2017.		Os05g0400600	LOC_Os05g33230.1				GO:0009507 - chloroplast, GO:0016021 - integral to membrane		
12033	ABCI9	OsABCI9, OsABCI9_1, OsABCI9_2	ABC TRANSPORTER I FAMILY MEMBER 9	ABC transporter superfamily ABCI subgroup member 9	ABC TRANSPORTER I FAMILY MEMBER 9		3		 Biochemical character	Os03g0670100	LOC_Os03g46740.2, LOC_Os03g46740.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0009507 - chloroplast, GO:0006869 - lipid transport, GO:0016887 - ATPase activity		
12034	ABCI10	OsABCI10, OsABCI10_1, OsABCI10_2	ABC TRANSPORTER I FAMILY MEMBER 10	ABC transporter superfamily ABCI subgroup member 10	ABC TRANSPORTER I FAMILY MEMBER 10		4		 Tolerance and resistance - Stress tolerance	Os04g0553000	LOC_Os04g46700.2, LOC_Os04g46700.1				GO:0009414 - response to water deprivation, GO:0006869 - lipid transport, GO:0009707 - chloroplast outer membrane	TO:0000276 - drought tolerance	
12035	ABCI11	OsABCI11	ABC TRANSPORTER I FAMILY MEMBER 11	ABC transporter superfamily ABCI subgroup member 11	ABC TRANSPORTER I FAMILY MEMBER 11		1		 Biochemical character	Os01g0974000	LOC_Os01g74280.1				GO:0005543 - phospholipid binding, GO:0005319 - lipid transporter activity, GO:0009706 - chloroplast inner membrane		
12036	ABCI13	OsABCI13	ABC TRANSPORTER I FAMILY MEMBER 13	ABC transporter superfamily ABCI subgroup member 13	ABC TRANSPORTER I FAMILY MEMBER 13		1			Os01g0614700	LOC_Os01g42830.1				GO:0006897 - endocytosis, GO:0016020 - membrane		
12037	ABCI14	OsABCI14	ABC TRANSPORTER I FAMILY MEMBER 14	ABC transporter superfamily ABCI subgroup member 14	ABC TRANSPORTER I FAMILY MEMBER 14		2		 Biochemical character	Os02g0810300	LOC_Os02g56550.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0010218 - response to far red light, GO:0010114 - response to red light, GO:0005524 - ATP binding		
12038	ABCI15	OsABCI15	ABC TRANSPORTER I FAMILY MEMBER 15	ABC transporter superfamily ABCI subgroup member 15	ABC TRANSPORTER I FAMILY MEMBER 15		3	GO:0080167:response to karrikin.	 Biochemical character	Os03g0316900	LOC_Os03g20170.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
12039	ABCI16	OsABCI16, OsABCI16_1, OsABCI16_2	ABC TRANSPORTER I FAMILY MEMBER 16	ABC transporter superfamily ABCI subgroup member 16	ABC TRANSPORTER I FAMILY MEMBER 16		10			Os10g0476000	LOC_Os10g33630.2, LOC_Os10g33630.1				GO:0006897 - endocytosis, GO:0016020 - membrane		
12040	_	OsPDR20, RDR20	_				9		 Biochemical character	Os09g0332700	LOC_Os09g16330.2, LOC_Os09g16330.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
12042	_	RbcS1, OsRBCS1, OsRbcS1	_	RuBisCO small subunit 1, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 1			2		 Biochemical character	Os02g0152400	LOC_Os02g05830.2, LOC_Os02g05830.1				GO:0009853 - photorespiration, GO:0009536 - plastid, GO:0015979 - photosynthesis, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0004497 - monooxygenase activity		
12043	_	RbcS3, OsRBCS3, OsRbcS3, rbcS	_	RuBisCO small subunit 3, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 3			12	P18566. D00644. AY445627.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0291100	LOC_Os12g19381.1				GO:0009570 - chloroplast stroma, GO:0004497 - monooxygenase activity, GO:0031977 - thylakoid lumen, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0009637 - response to blue light, GO:0019253 - reductive pentose-phosphate cycle, GO:0048046 - apoplast, GO:0009409 - response to cold, GO:0005618 - cell wall, GO:0022626 - cytosolic ribosome, GO:0010332 - response to gamma radiation, GO:0010218 - response to far red light, GO:0010114 - response to red light, GO:0005507 - copper ion binding, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0009853 - photorespiration	TO:0000158 - red light sensitivity, TO:0000159 - blue light sensitivity, TO:0000011 - nitrogen sensitivity	
12044	_	RbcS5, OsRBCS5, OsRbcS5	_	RuBisCO small subunit 5, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 5			12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0291400	LOC_Os12g19381.1				GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis, GO:0005507 - copper ion binding, GO:0005618 - cell wall, GO:0009409 - response to cold, GO:0048046 - apoplast, GO:0031977 - thylakoid lumen, GO:0022626 - cytosolic ribosome, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0010218 - response to far red light, GO:0010114 - response to red light, GO:0009941 - chloroplast envelope, GO:0009853 - photorespiration, GO:0009637 - response to blue light, GO:0009570 - chloroplast stroma, GO:0004497 - monooxygenase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide	TO:0000011 - nitrogen sensitivity	
12045	CYP97A4	CYP97A4, OsCYP97A4	P-450 97A4	Cytochrome P450 97A4, Carotenoid beta-Ring Hydroxylase CYP97A4	CYTOCHROME P450 97A4	cyp97a4, cyp97a4-1, cyp97a4-2, cyp97a4-3	2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0817900	LOC_Os02g57290.4, LOC_Os02g57290.3, LOC_Os02g57290.2, LOC_Os02g57290.1				GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0016123 - xanthophyll biosynthetic process, GO:0010291 - carotene beta-ring hydroxylase activity		
12046	CYP97C2	CYP97C2	P-450 97C2	Cytochrome P450 97C2	CYTOCHROME P450 97C2		10		 Biochemical character	Os10g0546600	LOC_Os10g39930.2, LOC_Os10g39930.1				GO:0009974 - epsilon hydroxylase activity, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0016117 - carotenoid biosynthetic process, GO:0009941 - chloroplast envelope, GO:0005506 - iron ion binding		
12047	CYP97B4	CYP97B4, CYP97B4a	P-450 97B4	Cytochrome P450 97B4	CYTOCHROME P450 97B4		2		 Biochemical character	Os02g0173100	LOC_Os02g07680.5, LOC_Os02g07680.4, LOC_Os02g07680.3, LOC_Os02g07680.2, LOC_Os02g07680.1				GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
12048	_	OsPFK06, PFK06, PFK6	_	6-phosphofructokinase plastid isozyme, PFK plastid isozyme, phosphofructokinase 6			6	group A phosphofructokinase (PKF_A). LOC_Os06g05860. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0151900	LOC_Os06g05860.1				GO:0034059 - response to anoxia, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0009536 - plastid, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005737 - cytoplasm, GO:0003872 - 6-phosphofructokinase activity, GO:0005886 - plasma membrane, GO:0005945 - 6-phosphofructokinase complex, GO:0006096 - glycolysis	TO:0000482 - chemical stress sensitivity	
12049	_	OsPFPA3, PFPA3	_	pyrophosphate-dependent phosphofrucokinase alpha-subunit, PFP alpha-subunit, pyrophosphate-fructose-6-phosphatephosphotransferase alpha subunit 3, PFP-alpha subunit 3			8	LOC_Os08g25720.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0345700	LOC_Os08g25720.1				GO:0046872 - metal ion binding, GO:0003872 - 6-phosphofructokinase activity, GO:0006096 - glycolysis, GO:0005945 - 6-phosphofructokinase complex, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity, GO:0034058 - endosomal vesicle fusion, GO:0005829 - cytosol	TO:0000482 - chemical stress sensitivity	
12050	_	OsPFPB, PFPB, OsPFP-B, PFP-B, PFPbeta	_	pyrophosphate-dependent phosphofrucokinase beta-subunit, PFP beta-subunit, Pyrophosphate-Fru-6-P1-phosphotransferase, Pyrophosphate: fructose-6-phosphate 1-phosphotransferase beta subunit, PFP beta subunit, PFPase beta subunit		pfp1-1, pp1-2, pfp2	6	D17765. LOC_Os06g13810.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os06g0247500	LOC_Os06g13810.3, LOC_Os06g13810.1				GO:0046872 - metal ion binding, GO:0015979 - photosynthesis, GO:0016020 - membrane, GO:0034059 - response to anoxia, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity, GO:0046686 - response to cadmium ion, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005737 - cytoplasm, GO:0005618 - cell wall, GO:0005945 - 6-phosphofructokinase complex, GO:0005829 - cytosol, GO:0006096 - glycolysis, GO:0009793 - embryonic development ending in seed dormancy, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding	TO:0002656 - starch grain shape, TO:0002661 - seed maturation, TO:0000104 - floury endosperm, TO:0000399 - grain thickness, TO:0000382 - 1000-seed weight, TO:0000300 - glucose content, TO:0000696 - starch content, TO:0002658 - starch grain synthesis, TO:0006005 - fructose content, TO:0000482 - chemical stress sensitivity, TO:0000328 - sucrose content, TO:0002655 - starch grain size	PO:0009089 - endosperm 
12051	STR1	OsStr1	SULFURTRANSFERASE 1	Sulfurtransferase 1	SULFURTRANSFERASE 1		2			Os02g0596000	LOC_Os02g38240.1				GO:0009507 - chloroplast		
12052	STR2	OsStr2	SULFURTRANSFERASE 2	Sulfurtransferase 2	SULFURTRANSFERASE 2		3			Os03g0289400	LOC_Os03g18020.1						
12053	STR3	OsStr3	SULFURTRANSFERASE 3	Sulfurtransferase 3	SULFURTRANSFERASE 3		9			Os09g0279400	LOC_Os09g10750.1				GO:0009535 - chloroplast thylakoid membrane		
12054	STR4	OsStr4	SULFURTRANSFERASE 4	Sulfurtransferase 4	SULFURTRANSFERASE 4		9			Os09g0530000	LOC_Os09g36040.1				GO:0009535 - chloroplast thylakoid membrane		
12055	STR5	OsStr5, OsHAC1;1, HAC1;1	SULFURTRANSFERASE 5	Sulfurtransferase 5, High As Content 1;1	SULFURTRANSFERASE 5		2	TO:0006054: arsenic concentration. similar to SAG.	 Tolerance and resistance - Stress tolerance	Os02g0102300 	LOC_Os02g01220.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0015700 - arsenite transport, GO:0030611 - arsenate reductase activity, GO:0046685 - response to arsenic	TO:0000465 - mineral and ion content related trait	PO:0005679 - epidermis , PO:0000256 - root hair cell , PO:0025261 - pericycle cell 
12056	STR6	OsStr6, OsRhST, RLD, OsHAC1;2, HAC1;2	SULFURTRANSFERASE 6	Sulfurtransferase 6, rhodanese-related sulfurtransferase, rhodanese-like domain-containing protein, High As Content 1;2	SULFURTRANSFERASE 6		4	senescence-associated protein DIN1-like gene. LOC_Os04g17660. TO:0006054: arsenic concentration.	 Tolerance and resistance - Stress tolerance	Os04g0249600	LOC_Os04g17660.3, LOC_Os04g17660.2, LOC_Os04g17660.1				GO:0046685 - response to arsenic, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0015700 - arsenite transport, GO:0030611 - arsenate reductase activity	TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000465 - mineral and ion content related trait	PO:0005679 - epidermis , PO:0005708 - cortex , PO:0000252 - endodermis 
12057	STR7	OsStr7	SULFURTRANSFERASE 7	Sulfurtransferase 7, Rhodanese like domain containing protein	SULFURTRANSFERASE 7		12	LOC_Os12g24020.		Os12g0428000 	LOC_Os12g24020.3, LOC_Os12g24020.2, LOC_Os12g24020.1				GO:0051726 - regulation of cell cycle		
12058	STR8	OsStr8, OsHAC4, HAC4	SULFURTRANSFERASE 8	Sulfurtransferase 8, High As Content 4	SULFURTRANSFERASE 8	Oshac4	2	LOC_Os02g06290. rhodanase-like protein. TO:0006054: arsenic concentration. GO:0071722: detoxification of arsenic-containing substance. GO:1901684: arsenate ion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0157600	LOC_Os02g06290.2, LOC_Os02g06290.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0008794 - arsenate reductase (glutaredoxin) activity, GO:0046685 - response to arsenic		PO:0005772 - exodermis , PO:0006036 - root epidermis 
12059	STR9	OsStr9	SULFURTRANSFERASE 9	Sulfurtransferase 9	SULFURTRANSFERASE 9		6		 Biochemical character	Os06g0725000	LOC_Os06g50930.2, LOC_Os06g50930.1				GO:0004792 - thiosulfate sulfurtransferase activity, GO:0009507 - chloroplast, GO:0009611 - response to wounding, GO:0006979 - response to oxidative stress, GO:0009753 - response to jasmonic acid stimulus		
12060	STR10	OsStr10	SULFURTRANSFERASE 10	Sulfurtransferase 10	SULFURTRANSFERASE 10		1			Os01g0896500	LOC_Os01g67120.2, LOC_Os01g67120.1						
12061	STR11	OsStr11, OsCAS, Cas	SULFURTRANSFERASE 11	Sulfurtransferase 11, Calcium-Sensing Receptor	SULFURTRANSFERASE 11		2	GO:0090333:regulation of stomatal closure. a homolog of Arabidopsis calcium-sensing receptor (CaS).	 Tolerance and resistance - Stress tolerance	Os02g0729400	LOC_Os02g49680.1				GO:0009414 - response to water deprivation, GO:0015994 - chlorophyll metabolic process, GO:0019344 - cysteine biosynthetic process, GO:0009704 - de-etiolation, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0000023 - maltose metabolic process, GO:0031408 - oxylipin biosynthetic process, GO:0006098 - pentose-phosphate shunt, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0010207 - photosystem II assembly, GO:0009657 - plastid organization, GO:0043085 - positive regulation of catalytic activity, GO:0019216 - regulation of lipid metabolic process, GO:0009637 - response to blue light, GO:0010218 - response to far red light, GO:0010114 - response to red light, GO:0006364 - rRNA processing, GO:0019252 - starch biosynthetic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0009534 - chloroplast thylakoid, GO:0005739 - mitochondrion, GO:0009535 - chloroplast thylakoid membrane, GO:0071277 - cellular response to calcium ion	TO:0000276 - drought tolerance	
12062	STR12	OsStr12, Str12, TROL, Os-TROL, OsTROL	SULFURTRANSFERASE 12	Sulfurtransferase 12	SULFURTRANSFERASE 12		2	BF889464. LOC_Os02g15750.	 Tolerance and resistance - Disease resistance	Os02g0257300	LOC_Os02g15750.1				GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
12063	STR13	OsStr13	SULFURTRANSFERASE 13	Sulfurtransferase 13	SULFURTRANSFERASE 13		1			Os01g0889800	LOC_Os01g66600.2, LOC_Os01g66600.1						
12064	STR14	OsStr14	SULFURTRANSFERASE 14	Sulfurtransferase 14	SULFURTRANSFERASE 14		2		 Biochemical character	Os02g0525400 	LOC_Os02g32460.1				GO:0005524 - ATP binding, GO:0016740 - transferase activity		
12065	STR15	OsStr15	SULFURTRANSFERASE 15	Sulfurtransferase 15	SULFURTRANSFERASE 15		2	A3ACF3.	 Biochemical character	Os02g0804600	LOC_Os02g56080.1, LOC_Os02g56050.1				GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0016740 - transferase activity, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0046872 - metal ion binding, GO:0008033 - tRNA processing		
12066	STR16	OsStr16	SULFURTRANSFERASE 16	Sulfurtransferase 16	SULFURTRANSFERASE 16		7		 Biochemical character	Os07g0687500	LOC_Os07g48810.2, LOC_Os07g48810.1				GO:0016853 - isomerase activity, GO:0009507 - chloroplast		
12067	STR17	OsStr17	SULFURTRANSFERASE 17	Sulfurtransferase 17	SULFURTRANSFERASE 17		5			Os05g0323100	LOC_Os05g25780.1						
12068	STR18	OsStr18	SULFURTRANSFERASE 18	Sulfurtransferase 18	SULFURTRANSFERASE 18		12			Os12g0563400	LOC_Os12g37630.2, LOC_Os12g37630.1						
12069	STR19	OsStr19, OsPP126	SULFURTRANSFERASE 19	Sulfurtransferase 19, Protein phosphatase 126	SULFURTRANSFERASE 19		12	LOC_Os12g05660.		Os12g0152800	LOC_Os12g05660.4, LOC_Os12g05660.3, LOC_Os12g05660.2, LOC_Os12g05660.1						
12072	STR22	OsStr22	SULFURTRANSFERASE 22	Sulfurtransferase 22	SULFURTRANSFERASE 22		12		 Biochemical character	Os12g0608600	LOC_Os12g41500.1				GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0004792 - thiosulfate sulfurtransferase activity, GO:0005739 - mitochondrion, GO:0016784 - 3-mercaptopyruvate sulfurtransferase activity		
12073	STR23	OsStr23	SULFURTRANSFERASE 23	Sulfurtransferase 23	SULFURTRANSFERASE 23		2		 Biochemical character	Os02g0167100 	LOC_Os02g07044.2, LOC_Os02g07044.1				GO:0004792 - thiosulfate sulfurtransferase activity		
12074	STR24	OsStr24	SULFURTRANSFERASE 24	Sulfurtransferase 24	SULFURTRANSFERASE 24		3	(Q7Y1E2)									
12075	BGLU1	Os1bglu1, Os1Bglu1	BETA-GLUCOSIDASE 1	beta-glucosidase 1	BETA-GLUCOSIDASE 1		1	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q5QMT0. BAD73293.	 Biochemical character	Os01g0508000	LOC_Os01g32364.1				GO:0080079 - cellobiose glucosidase activity, GO:0080082 - esculin beta-glucosidase activity, GO:0047668 - amygdalin beta-glucosidase activity, GO:0009505 - plant-type cell wall, GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0022626 - cytosolic ribosome		
12076	BGLU2	Os1bglu2, Os1Bglu2	BETA-GLUCOSIDASE 2	beta-glucosidase 2	BETA-GLUCOSIDASE 2		1	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B7F8N7.	 Biochemical character	Os01g0813700	LOC_Os01g59819.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12077	BGLU3	Os1bglu3, Os1Bglu3	BETA-GLUCOSIDASE 3	beta-glucosidase 3	BETA-GLUCOSIDASE 3		1	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q8RZL1.	 Biochemical character	Os01g0813800	LOC_Os01g59840.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12078	BGLU4	Os1bglu4, Os1Bglu4, Os1BGlu4	BETA-GLUCOSIDASE 4	beta-glucosidase 4	BETA-GLUCOSIDASE 4		1	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD82183, BAD82346. Q5N863.	 Biochemical character	Os01g0897600	LOC_Os01g67220.3, LOC_Os01g67220.2, LOC_Os01g67220.1				GO:0008422 - beta-glucosidase activity, GO:0005737 - cytoplasm, GO:0005975 - carbohydrate metabolic process		
12079	BGLU5	Os1bglu5, Os1Bglu5, 1bglu5	BETA-GLUCOSIDASE 5	beta-glucosidase 5	BETA-GLUCOSIDASE 5		1	LOC_Os01g70520. Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD87322, BAD88178. Q5JK35. GO:0102483: scopolin beta-glucosidase activity. GO:1901657: glycosyl compound metabolic process.	 Biochemical character,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0930800	LOC_Os01g70520.2, LOC_Os01g70520.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0048573 - photoperiodism, flowering	TO:0000485 - sterility related trait, TO:0000137 - days to heading	
12080	BGLU6	Os3bglu6, Os3BGlu6, 3BGlu6	BETA-GLUCOSIDASE 6	beta-glucosidase 6	BETA-GLUCOSIDASE 6		3	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AY129294. Q8L7J2. PDB accession 3GNO.	 Biochemical character	Os03g0212800	LOC_Os03g11420.1				GO:0048046 - apoplast, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0009507 - chloroplast, GO:0005975 - carbohydrate metabolic process, GO:0046872 - metal ion binding, GO:0080079 - cellobiose glucosidase activity, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0004565 - beta-galactosidase activity, GO:0033907 - beta-D-fucosidase activity		
12081	BGLU7	Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1	BETA-GLUCOSIDASE 7	beta-glucosidase 7	BETA-GLUCOSIDASE 7		3	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AAX95519, AAS07254. Q75I93.  bglu1 in Opassiri et al. 2003.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0703000	LOC_Os03g49600.5, LOC_Os03g49600.4, LOC_Os03g49600.3, LOC_Os03g49600.2, LOC_Os03g49600.1				GO:0009635 - response to herbicide, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0005576 - extracellular region, GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0004567 - beta-mannosidase activity, GO:0033907 - beta-D-fucosidase activity, GO:0047701 - beta-L-arabinosidase activity, GO:0050224 - prunasin beta-glucosidase activity, GO:0080079 - cellobiose glucosidase activity, GO:0080082 - esculin beta-glucosidase activity, GO:0047668 - amygdalin beta-glucosidase activity, GO:0022626 - cytosolic ribosome, GO:0009505 - plant-type cell wall, GO:0008270 - zinc ion binding, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity	TO:0000058 - herbicide sensitivity	
12082	BGLU8	Os3bglu8, Os3BGlu8	BETA-GLUCOSIDASE 8	beta-glucosidase 8	BETA-GLUCOSIDASE 8		3	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AAX95520, AAS07251. Q75I94.	 Biochemical character	Os03g0703100	LOC_Os03g49610.1				GO:0009505 - plant-type cell wall, GO:0033907 - beta-D-fucosidase activity, GO:0047668 - amygdalin beta-glucosidase activity, GO:0022626 - cytosolic ribosome, GO:0004565 - beta-galactosidase activity, GO:0004567 - beta-mannosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0047701 - beta-L-arabinosidase activity, GO:0080079 - cellobiose glucosidase activity, GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0080082 - esculin beta-glucosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0004338 - glucan 1,3-beta-glucosidase activity		
12083	BGLU10	Os4bglu10, Os4BGlu10	BETA-GLUCOSIDASE 10	beta-glucosidase 10	BETA-GLUCOSIDASE 10		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE05481. Q7F9K4.	 Biochemical character	Os04g0474500	LOC_Os04g39840.2, LOC_Os04g39840.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12084	BGLU9	Os4bglu9, Os4BGlu9	BETA-GLUCOSIDASE 9	beta-glucosidase 9	BETA-GLUCOSIDASE 9		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B7ECS8.	 Biochemical character	Os04g0474300	LOC_Os04g39814.3, LOC_Os04g39814.2, LOC_Os04g39814.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12085	BGLU12	Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2	BETA-GLUCOSIDASE 12	beta-glucosidase 12, tuberonic acid glucoside beta-glucosidase 2, tuberonic acid glucoside hydrolyzing beta-glucosidase 2	BETA-GLUCOSIDASE 12		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE05483. Q7XKV4, B8AVF0. PDB code: 3PTK, 3PTM, 3PTQ. 	 Biochemical character	Os04g0474800	LOC_Os04g39880.3, LOC_Os04g39880.2, LOC_Os04g39880.1				GO:0005975 - carbohydrate metabolic process, GO:0009505 - plant-type cell wall, GO:0004338 - glucan 1,3-beta-glucosidase activity, GO:0004565 - beta-galactosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0009860 - pollen tube growth, GO:0047701 - beta-L-arabinosidase activity, GO:0033907 - beta-D-fucosidase activity		
12086	BGLU11	Os4bglu11, Os4BGlu11	BETA-GLUCOSIDASE 11	beta-glucosidase 11	BETA-GLUCOSIDASE 11		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE05482. Q7XKV5.	 Biochemical character	Os04g0474700	LOC_Os04g39864.4, LOC_Os04g39864.3, LOC_Os04g39864.2, LOC_Os04g39864.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12087	BGLU14	Os4bglu14, Os4Bglu14, Os4BGlu14	BETA-GLUCOSIDASE 14	beta-glucosidase 14	BETA-GLUCOSIDASE 14		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE03397. Q7XPY7.	 Biochemical character	Os04g0513100	LOC_Os04g43360.2, LOC_Os04g43360.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009809 - lignin biosynthetic process, GO:0005975 - carbohydrate metabolic process		
12088	BGLU15	Os4bglu15, Os4Bglu15	BETA-GLUCOSIDASE 15	beta-glucosidase 15	BETA-GLUCOSIDASE 15		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE03399. Q7XPY5. LOC_Os04g43380. Os04g0513300 (in Rap3 (build5)).	 Biochemical character		LOC_Os04g43380				GO:0008422 - beta-glucosidase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
12089	BGLU16	Os4bglu16, Os4Bglu16, Os4BGlu16	BETA-GLUCOSIDASE 16	beta-glucosidase 16	BETA-GLUCOSIDASE 16		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE54544, CAE01908. Q7XSK2.	 Biochemical character	Os04g0513400	LOC_Os04g43390.2, LOC_Os04g43390.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity, GO:0009809 - lignin biosynthetic process		
12090	BGLU17	Os4bglu17, Os4Bglu17	BETA-GLUCOSIDASE 17	beta-glucosidase 17	BETA-GLUCOSIDASE 17		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q7XSK1.	 Biochemical character	Os04g0513700	LOC_Os04g43400.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12091	BGLU18	Os4bglu18, Os4Bglu18, Os4BGlu18	BETA-GLUCOSIDASE 18	beta-glucosidase 18	BETA-GLUCOSIDASE 18		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE01910, CAE54546. Q7XSK0.	 Biochemical character	Os04g0513900	LOC_Os04g43410.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0009809 - lignin biosynthetic process		
12092	BGLU19	Os5bglu19, Os5Bglu19	BETA-GLUCOSIDASE 19	beta-glucosidase 19	BETA-GLUCOSIDASE 19		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AAS79738. Q0DIT2.	 Biochemical character	Os05g0365600	LOC_Os05g30250.2, LOC_Os05g30250.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12093	BGLU20	Os5bglu20, Os5Bglu20	BETA-GLUCOSIDASE 20	beta-glucosidase 20	BETA-GLUCOSIDASE 20		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B9FHH2.	 Biochemical character	Os05g0365700	LOC_Os05g30280.3, LOC_Os05g30280.2, LOC_Os05g30280.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12094	BGLU21	Os5bglu21, Os5Bglu21	BETA-GLUCOSIDASE 21	beta-glucosidase 21	BETA-GLUCOSIDASE 21		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q60DY1.	 Biochemical character	Os05g0366000	LOC_Os05g30300.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12095	BGLU22	Os5bglu22, Os5Bglu22	BETA-GLUCOSIDASE 22	beta-glucosidase 22	BETA-GLUCOSIDASE 22		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AAV31358. Q60DX8.	 Biochemical character	Os05g0366600	LOC_Os05g30350.2, LOC_Os05g30350.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12096	BGLU23	Os5bglu23, Os5Bglu23	BETA-GLUCOSIDASE 23	beta-glucosidase 23	BETA-GLUCOSIDASE 23		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q6L597.	 Biochemical character	Os05g0366800	LOC_Os05g30390.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12097	BGLU24	Os6bglu24, Os6BGlu24	BETA-GLUCOSIDASE 24	beta-glucosidase 24	BETA-GLUCOSIDASE 24		6	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD61620. Q5Z9Z0.	 Biochemical character	Os06g0320200	LOC_Os06g21570.1				GO:0008422 - beta-glucosidase activity, GO:0009860 - pollen tube growth, GO:0005975 - carbohydrate metabolic process, GO:0009505 - plant-type cell wall		
12098	BGLU25	Os6bglu25, Os6Bglu25	BETA-GLUCOSIDASE 25	beta-glucosidase 25	BETA-GLUCOSIDASE 25		6	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q0DA21.	 Biochemical character	Os06g0683300	LOC_Os06g46940.2, LOC_Os06g46940.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity, GO:0009505 - plant-type cell wall		
12099	BGLU26	Os7bglu26, Os7BGlu26	BETA-GLUCOSIDASE 26	beta-glucosidase 26	BETA-GLUCOSIDASE 26		7	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. A3BMZ5.	 Biochemical character	Os07g0656200	LOC_Os07g46280.3, LOC_Os07g46280.2, LOC_Os07g46280.1				GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity, GO:0080079 - cellobiose glucosidase activity, GO:0004567 - beta-mannosidase activity, GO:0080082 - esculin beta-glucosidase activity, GO:0047701 - beta-L-arabinosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0009505 - plant-type cell wall, GO:0033907 - beta-D-fucosidase activity, GO:0004338 - glucan 1,3-beta-glucosidase activity, GO:0047668 - amygdalin beta-glucosidase activity, GO:0022626 - cytosolic ribosome, GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity		
12100	BGLU27	Os8bglu27, OsBGlu27	BETA-GLUCOSIDASE 27	beta-glucosidase 27	BETA-GLUCOSIDASE 27		8	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD10670, BAC57391. Q84YK7.	 Biochemical character	Os08g0509200	LOC_Os08g39860.2, LOC_Os08g39860.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity, GO:0009860 - pollen tube growth, GO:0009505 - plant-type cell wall		
12101	BGLU28	Os8bglu28, OsBGlu28	BETA-GLUCOSIDASE 28	beta-glucosidase 28	BETA-GLUCOSIDASE 28		8	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD10672. Q7EXZ4.	 Biochemical character	Os08g0509400	LOC_Os08g39870.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0009860 - pollen tube growth, GO:0009505 - plant-type cell wall		
12102	BGLU29	Os9bglu29, OsBGlu29	BETA-GLUCOSIDASE 29	beta-glucosidase 29	BETA-GLUCOSIDASE 29		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. A3C053.	 Biochemical character	Os09g0490400	LOC_Os09g31410.2, LOC_Os09g31410.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12103	BGLU30	Os9bglu30, OsBGlu30, bglu 2, bglu2, BGlu2	BETA-GLUCOSIDASE 30	beta-glucosidase 30	BETA-GLUCOSIDASE 30		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AY056828. Q0J0N4.  bglu2 in Opassiri et al. 2003.	 Biochemical character	Os09g0491100	LOC_Os09g31430.2, LOC_Os09g31430.1				GO:0009860 - pollen tube growth, GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity, GO:0009505 - plant-type cell wall		
12104	BGLU31	Os9bglu31, Os9BGlu31	BETA-GLUCOSIDASE 31	beta-glucosidase 31	BETA-GLUCOSIDASE 31		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B7F7K7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0511600	LOC_Os09g33680.2, LOC_Os09g33680.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12105	BGLU32	Os9bglu32, Os9Bglu32	BETA-GLUCOSIDASE 32	beta-glucosidase 32	BETA-GLUCOSIDASE 32		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B7F7K7.	 Biochemical character	Os09g0511700	LOC_Os09g33690.4, LOC_Os09g33690.3, LOC_Os09g33690.2, LOC_Os09g33690.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12106	BGLU33	Os9bglu33, Os9Bglu33, 9bglu33	BETA-GLUCOSIDASE 33	beta-glucosidase 33	BETA-GLUCOSIDASE 33		9	LOC_Os09g33710. Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q0J0G1. GO:1901657: glycosyl compound metabolic process.	 Biochemical character	Os09g0511900	LOC_Os09g33710.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
12107	BGLU34	Os10bglu34, Os10Bglu34	BETA-GLUCOSIDASE 34	beta-glucosidase 34	BETA-GLUCOSIDASE 34		10	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.  AAK92581. Q339X2.	 Biochemical character	Os10g0323500	LOC_Os10g17650.1				GO:0048046 - apoplast, GO:0008422 - beta-glucosidase activity, GO:0009507 - chloroplast, GO:0005975 - carbohydrate metabolic process		
12108	BGLU35	Os11bglu35, OsBGlu35	BETA-GLUCOSIDASE 35	beta-glucosidase 35	BETA-GLUCOSIDASE 35		11	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.  AAY23259. Q53NF0.	 Biochemical character	Os11g0184300	LOC_Os11g08160.1, LOC_Os11g08120.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12109	BGLU36	Os11bglu36, Os11Bglu36, SFR2, sfr2	BETA-GLUCOSIDASE 36	beta-glucosidase 36, SENSITIVE TO FREEZING2	BETA-GLUCOSIDASE 36		11	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q8L6H7. AJ491323.	 Biochemical character	Os11g0683500	LOC_Os11g45710.7, LOC_Os11g45710.6, LOC_Os11g45710.5, LOC_Os11g45710.4, LOC_Os11g45710.3, LOC_Os11g45710.2, LOC_Os11g45710.1				GO:0008422 - beta-glucosidase activity, GO:0009707 - chloroplast outer membrane, GO:0050826 - response to freezing, GO:0005975 - carbohydrate metabolic process		
12110	BGLU37	Os11bglu37, OsBGlu37	BETA-GLUCOSIDASE 37	beta-glucosidase 37	BETA-GLUCOSIDASE 37		11	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.	 Biochemical character								
12111	BGLU38	Os12bglu38, Os12Bglu38	BETA-GLUCOSIDASE 38	beta-glucosidase 38	BETA-GLUCOSIDASE 38		12	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q2QSR8.	 Biochemical character	Os12g0420100	LOC_Os12g23170.1				GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0009505 - plant-type cell wall, GO:0022626 - cytosolic ribosome, GO:0005975 - carbohydrate metabolic process, GO:0047668 - amygdalin beta-glucosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0080079 - cellobiose glucosidase activity, GO:0080082 - esculin beta-glucosidase activity		
12112	BGLU39	Os12bglu39, Os12Bglu39	BETA-GLUCOSIDASE 39	beta-glucosidase 39	BETA-GLUCOSIDASE 39		12	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.	 Biochemical character								
12113	BGLU40	Os12bglu40, Os12Bglu40	BETA-GLUCOSIDASE 40	beta-glucosidase 40	BETA-GLUCOSIDASE 40		12	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.	 Biochemical character								
12114	_		_	cystatin-II, cystein proteinase inhibitor			1	Q0JNR2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0270100	LOC_Os01g16430.1				GO:0005576 - extracellular region, GO:0009628 - response to abiotic stimulus, GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0050897 - cobalt ion binding, GO:0006952 - defense response	TO:0000432 - temperature response trait	
12115	_		_	cystatin			3	Q10Q46.	 Biochemical character	Os03g0210200	LOC_Os03g11180.1				GO:0005576 - extracellular region, GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0006952 - defense response		
12116	_	ZIURP1, Ub-CEP52-1	_	ubiquitin fused to CEP52 gene-1			3	an ubiquitin fused to ribosomal protein L40. D12629. AB047855. P0CH34.		Os03g0234200	LOC_Os03g13170.1				GO:0003735 - structural constituent of ribosome, GO:0005634 - nucleus, GO:0006412 - translation, GO:0005840 - ribosome		
12117	ZFP179	OsZFP179	ZINC FINGER PROTEIN 179	zinc finger protein ZFP179	ZINC FINGER PROTEIN 179		1	LOC_Os01g62190. AAL76091. AY077725. OsZFP in Huang et al. 2002.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0839100	LOC_Os01g62190.1				GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance	
12118	_	OsProT, ProT, OsProT2, ProT2	_	proline transporter, proline transporter 2			3	AB022783. Q60DN5. GO:0035524:proline transmembrane transport. LOC_Os03g44230. OsProT2 in Zhao et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0644400	LOC_Os03g44230.1				GO:0005886 - plasma membrane, GO:0015193 - L-proline transmembrane transporter activity, GO:0016021 - integral to membrane		
12119	ZFP15	ZFP 15	ZINC FINGER PROTEIN 15	zinc finger protein ZFP15, ZOS3-22-C2H2 zinc finger protein	ZINC FINGER PROTEIN 15		3	AY286473. HQ858846. C2H2 transcription factor. LOC_Os03g60570. photosynthetic electron transport related gene. 	 Other	Os03g0820400	LOC_Os03g60570.1				GO:0008270 - zinc ion binding		
12120	_		_	Heavy metal ion transport, Heavy metal ion transporter			7		 Biochemical character	Os07g0623200	LOC_Os07g43040.1				GO:0030001 - metal ion transport, GO:0016021 - integral to membrane, GO:0019829 - cation-transporting ATPase activity, GO:0046872 - metal ion binding		
12121	YLC2	OsHO2, HO2, OsHO-2, HO-2	YOUNG LEAF CHLOROSIS 2	heme oxgenase 2, heme oxygenase-2, Young Leaf Chlorosis 2	HEME OXYGENASE 2	ylc2, Osho2	3	Q10K62. KF274032. LOC_Os03g27770. TO:0006060: leaf chlorosis. GO:1901401: regulation of tetrapyrrole metabolic process.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0395000	LOC_Os03g27770.1				GO:0009507 - chloroplast, GO:0009637 - response to blue light, GO:0006788 - heme oxidation, GO:0015979 - photosynthesis, GO:0004392 - heme oxygenase (decyclizing) activity, GO:0033014 - tetrapyrrole biosynthetic process, GO:0009570 - chloroplast stroma	TO:0000159 - blue light sensitivity, TO:0000168 - abiotic stress trait, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content	
12122	COPT1	COPT1, OsCOPT1	COPPER TRANSPORTER 1	copper transporter 1			1	LOC_ Os01g56420. GQ387494. Q94EE4. COPT/Ctr type copper transporter-like gene family.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0770700	LOC_Os01g56420.1				GO:0005375 - copper ion transmembrane transporter activity, GO:0046688 - response to copper ion, GO:0043621 - protein self-association, GO:0006952 - defense response, GO:0005887 - integral to plasma membrane, GO:0051119 - sugar transmembrane transporter activity	TO:0000021 - copper sensitivity	
12123	COPT5	COPT5, OsCOPT5	COPPER TRANSPORTER 5	copper transporter 5			5	GQ387495. Q60EN8. COPT/Ctr type copper transporter-like gene family.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0424700	LOC_Os05g35050.1				GO:0005887 - integral to plasma membrane, GO:0005375 - copper ion transmembrane transporter activity, GO:0006952 - defense response, GO:0051119 - sugar transmembrane transporter activity, GO:0043621 - protein self-association		
12124	COPT2	COPT2, OsCOPT2	COPPER TRANSPORTER 2	copper transporter 2			1	Q5ZD08. HQ833653. COPT/Ctr type copper transporter-like gene family.	 Biochemical character	Os01g0770800	LOC_Os01g56430.1				GO:0016021 - integral to membrane, GO:0005375 - copper ion transmembrane transporter activity		
12125	COPT3	COPT3, OsCOPT3	COPPER TRANSPORTER 3	copper transporter 3			3	Q10KT6. HQ833654. COPT/Ctr type copper transporter-like gene family.	 Biochemical character	Os03g0370800	LOC_Os03g25470.1				GO:0016021 - integral to membrane, GO:0005375 - copper ion transmembrane transporter activity		
12126	COPT4	COPT4, OsCOPT4	COPPER TRANSPORTER 4	copper transporter 4			4	Q7XTF8. HQ833655. COPT/Ctr type copper transporter-like gene family.	 Biochemical character	Os04g0415600	LOC_Os04g33900.1				GO:0016021 - integral to membrane, GO:0005375 - copper ion transmembrane transporter activity		
12127	COPT6	COPT6, OsCOPT6	COPPER TRANSPORTER 6	copper transporter 6			8	Q6Z0Q9. HQ833656. COPT/Ctr type copper transporter-like gene family.	 Biochemical character	Os08g0455900	LOC_Os08g35490.1				GO:0016021 - integral to membrane, GO:0005375 - copper ion transmembrane transporter activity		
12128	COPT7	OsCOPT7	COPPER TRANSPORTER 7	copper transporter 7			9	Q69P80. HQ833657. COPT/Ctr type copper transporter-like gene family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0440700	LOC_Os09g26900.1				GO:0005375 - copper ion transmembrane transporter activity, GO:0046688 - response to copper ion, GO:0016021 - integral to membrane	TO:0000021 - copper sensitivity	
12129	MIOX	OsMIOX	MYO-INOSITOL OXYGENASE	Myo-inositol oxygenase	MYO-INOSITOL OXYGENASE	osmiox	6	Q5Z8T3.	 Tolerance and resistance - Stress tolerance	Os06g0561000	LOC_Os06g36560.2, LOC_Os06g36560.1				GO:0006949 - syncytium formation, GO:0050113 - inositol oxygenase activity, GO:0019310 - inositol catabolic process, GO:0009414 - response to water deprivation, GO:0005783 - endoplasmic reticulum, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0005506 - iron ion binding, GO:0005737 - cytoplasm	TO:0000276 - drought tolerance	
12130	_	OsCPR1, CPR1	_	cytochrome P450 reductase 1, NADPH-cytochrome P450 reductase 1			4	BF889484.	 Biochemical character	Os04g0653400	LOC_Os04g55960.1				GO:0016491 - oxidoreductase activity, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
12131	_	OsCPR2	_	cytochrome P450 reductase 2, NADPH-cytochrome P450 reductase 2			8		 Biochemical character	Os08g0243500	LOC_Os08g14570.1				GO:0005506 - iron ion binding, GO:0003958 - NADPH-hemoprotein reductase activity, GO:0009698 - phenylpropanoid metabolic process, GO:0010181 - FMN binding, GO:0005783 - endoplasmic reticulum		
12132	_	OsCPR3	_	cytochrome P450 reductase 3, NADPH-cytochrome P450 reductase 3			9		 Biochemical character	Os09g0558900	LOC_Os09g38620.1				GO:0009698 - phenylpropanoid metabolic process, GO:0005506 - iron ion binding, GO:0003958 - NADPH-hemoprotein reductase activity, GO:0005789 - endoplasmic reticulum membrane, GO:0010181 - FMN binding		
12133	_	OsLCBK1	_	long-chain base kinase 1			10		 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0516800	LOC_Os10g37280.1				GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, GO:0004143 - diacylglycerol kinase activity		
12134	_	OsLCBK2	_	long-chain base kinase 2			4		 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0541500	LOC_Os04g45800.1				GO:0004143 - diacylglycerol kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway		
12135	LFL2	OsLFL2	LATE-FLOWERING 2	B3 domain-containing protein LFL2, LEC2 and FUSCA3-like protein 2, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2	LEC2 AND FUSCA3-LIKE PROTEIN 2		4	Q7XKC5. Q7XKC4.	 Other	Os04g0676600/Os04g0676650					GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
12136	OAT	OsOAT, delta-OAT	ORNITHINE DELTA-AMINOTRANSFERASE	ornithine delta-aminotransferase, ornithine aminotransferase	ORNITHINE DELTA-AMINOTRANSFERASE	Osoat, Osoat-1, Osoat-2	3	LOC_Os03g44150. Q10G56. GO:0055129:L-proline biosynthetic process. TO:0000869: glume morphology trait. TO:0000931: seed quality trait.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0643300	LOC_Os03g44150.1				GO:0009737 - response to abscisic acid stimulus, GO:0008270 - zinc ion binding, GO:0004587 - ornithine-oxo-acid transaminase activity, GO:0005759 - mitochondrial matrix, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0042538 - hyperosmotic salinity response, GO:0030170 - pyridoxal phosphate binding, GO:0009733 - response to auxin stimulus, GO:0019544 - arginine catabolic process to glutamate, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009651 - response to salt stress, GO:0006593 - ornithine catabolic process, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009856 - pollination, GO:0006561 - proline biosynthetic process, GO:0009908 - flower development, GO:0009901 - anther dehiscence	TO:0000095 - osmotic response sensitivity, TO:0000622 - flower development trait, TO:0000180 - spikelet fertility, TO:0000474 - glume opening, TO:0000484 - seed shape, TO:0020033 - glume length, TO:0020034 - glume width, TO:0002673 - amino acid content, TO:0006002 - proline content	PO:0007615 - flower development stage 
12138	_	OsDjA1	_	DnaJ domain protein A1			2		 Tolerance and resistance - Stress tolerance	Os02g0656500	LOC_Os02g43930.3, LOC_Os02g43930.2, LOC_Os02g43930.1				GO:0006457 - protein folding, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0046872 - metal ion binding		
12139	_	OsDjA2	_	DnaJ domain protein A2, rice DJA4 homolog			2	a Homolog of Arabidopsis chloroplast J protein. LOC_Os02g56040.	 Tolerance and resistance - Stress tolerance	Os02g0804500	LOC_Os02g56040.1				GO:0046872 - metal ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0005524 - ATP binding, GO:0006457 - protein folding, GO:0009408 - response to heat		
12140	_	OsDjA3	_	DnaJ domain protein A3			3								GO:0006457 - protein folding		
12141	_	OsDjA4, YDJ1	_	DnaJ domain protein A4, YDJ1 protein			3	A rice ortholog protein of yeast Ydj1 protein. D15677.	 Tolerance and resistance - Stress tolerance	Os03g0648400	LOC_Os03g44620.2				GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0046872 - metal ion binding, GO:0006457 - protein folding		
12142	_	OsDjA5	_	DnaJ domain protein A5			3	LOC_Os03g57340.1. A rice ortholog protein of yeast Ydj1 protein. Chaperone protein DnaJ.	 Tolerance and resistance - Stress tolerance	Os03g0787300	LOC_Os03g57340.1				GO:0046872 - metal ion binding, GO:0006457 - protein folding, GO:0009408 - response to heat, GO:0005524 - ATP binding		
12143	_	OsDjA6, DjA6	_	DnaJ domain protein A6, DnaJ protein RNB8			4	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0549600	LOC_Os04g46390.3, LOC_Os04g46390.2, LOC_Os04g46390.1				GO:0009408 - response to heat, GO:0002237 - response to molecule of bacterial origin, GO:0002238 - response to molecule of fungal origin, GO:0005524 - ATP binding, GO:0006457 - protein folding, GO:0010498 - proteasomal protein catabolic process, GO:0031348 - negative regulation of defense response, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0052567 - response to defense-related host reactive oxygen species production, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000074 - blast disease, TO:0000112 - disease resistance	
12144	_	OsDjA7, OsDnaJ	_	DnaJ domain protein A7, rice DJA6 homolog			5	a Homolog of Arabidopsis chloroplast J protein. LOC_Os05g26902. OsDnaJ in Yamamoto et al. 2005.	 Tolerance and resistance - Stress tolerance	Os05g0333500	LOC_Os05g26902.1				GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0006457 - protein folding, GO:0042542 - response to hydrogen peroxide, GO:0009535 - chloroplast thylakoid membrane, GO:0046872 - metal ion binding, GO:0009411 - response to UV, GO:0006974 - response to DNA damage stimulus, GO:0009658 - chloroplast organization	TO:0000160 - UV light sensitivity, TO:0002715 - chloroplast development trait	
12145	_	OsDjA8	_	DnaJ domain protein A8, rice DJA7 homolog			5	a Homolog of Arabidopsis chloroplast J protein. LOC_Os05g26926.	 Tolerance and resistance - Stress tolerance	Os05g0334400	LOC_Os05g26926.1				GO:0009658 - chloroplast organization, GO:0009535 - chloroplast thylakoid membrane, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0006457 - protein folding, GO:0009408 - response to heat	TO:0002715 - chloroplast development trait	
12146	_	OsDjA9	_	DnaJ domain protein A9			6		 Tolerance and resistance - Stress tolerance	Os06g0116800	LOC_Os06g02620.1				GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0010198 - synergid death, GO:0010197 - polar nucleus fusion, GO:0009558 - cellularization of the embryo sac, GO:0000740 - nuclear membrane fusion, GO:0051085 - chaperone mediated protein folding requiring cofactor, GO:0046872 - metal ion binding, GO:0009408 - response to heat		
12147	_	OsDjA10	_	DnaJ domain protein A10			6								GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
12148	_	OsDjA11	_	DnaJ domain protein A11			12		 Tolerance and resistance - Stress tolerance	Os12g0168400	LOC_Os12g07060.1				GO:0005524 - ATP binding, GO:0006457 - protein folding, GO:0046872 - metal ion binding, GO:0009408 - response to heat		
12149	_	OsDjA12	_	DnaJ domain protein A12			12			Os12g0619100	LOC_Os12g42440.1				GO:0046872 - metal ion binding, GO:0006457 - protein folding		
12150	_	OsDjB1	_	DnaJ domain protein B1			1		 Tolerance and resistance - Stress tolerance	Os01g0239100	LOC_Os01g13760.1				GO:0006950 - response to stress, GO:0006457 - protein folding		
12151	_	OsDjB2	_	DnaJ domain protein B2			1			Os01g0875700	LOC_Os01g65480.1				GO:0006457 - protein folding		
12152	_	OsDjB3	_	DnaJ domain protein B3			2		 Tolerance and resistance - Stress tolerance	Os02g0128400	LOC_Os02g03600.1				GO:0006950 - response to stress, GO:0006457 - protein folding		
12153	_	OsDjB4	_	DnaJ domain protein B4			2			Os02g0306900	LOC_Os02g20394.1				GO:0006457 - protein folding		
12154	_	OsDjB5	_	DnaJ domain protein B5			5			Os05g0127400	LOC_Os05g03630.1						
12155	_	OsDjB7	_	DnaJ domain protein B7			5		 Tolerance and resistance - Stress tolerance	Os05g0562300	LOC_Os05g48810.1				GO:0006950 - response to stress, GO:0006457 - protein folding		
12156	_	OsDjB8	_	DnaJ domain protein B8			8		 Tolerance and resistance - Stress tolerance	Os08g0161900	LOC_Os08g06460.2, LOC_Os08g06460.1				GO:0006457 - protein folding, GO:0006950 - response to stress		
12157	_	OsDjB9, OsSTA211	_	DnaJ domain protein B9			8	LOC_Os08g28700. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0374400	LOC_Os08g28700.1				GO:0006950 - response to stress, GO:0006457 - protein folding		PO:0009066 - anther 
12158	_	OsDjC1	_	DnaJ domain protein C1, rice DJC26 homolog			1	a Homolog of Arabidopsis chloroplast J protein. LOC_Os01g01160.		Os01g0101700	LOC_Os01g01160.1						
12159	_	OsDjC2	_	DnaJ domain protein C2			1			Os01g0157800	LOC_Os01g06454.1						
12160	_	OsDjC3	_	DnaJ domain protein C3			1	LOC_Os01g17030.			LOC_Os01g17030						
12161	_	OsDjC4	_	DnaJ domain protein C4			1	LOC_Os01g17040.			LOC_Os01g17040						
12162	_	OsDjC5	_	DnaJ domain protein C5			1			Os01g0355500	LOC_Os01g25320.1						
12163	_	OsDjC6	_	DnaJ domain protein C6			1		 Tolerance and resistance - Stress tolerance	Os01g0375100	LOC_Os01g27740.3, LOC_Os01g27740.2, LOC_Os01g27740.1				GO:0006950 - response to stress		
12164	_	OsDjC7	_	DnaJ domain protein C7			1			Os01g0512100	LOC_Os01g32870.2, LOC_Os01g32870.1						
12165	_	OsDjC8	_	DnaJ domain protein C8			1		 Tolerance and resistance - Stress tolerance	Os01g0521500	LOC_Os01g33800.2, LOC_Os01g33800.1				GO:0006950 - response to stress		
12166	_	OsDjC9	_	DnaJ domain protein C9			1	LOC_Os01g37560.3. HSP40 domain containing protein.	 Tolerance and resistance - Stress tolerance	Os01g0556400	LOC_Os01g37560.3, LOC_Os01g37560.2, LOC_Os01g37560.1				GO:0006950 - response to stress	TO:0000164 - stress trait	
12167	BPH33	OsDjC10, DjC10, Bph33(t), Bph33	BROWN PLANTHOPPER RESISTANCE 33	DnaJ domain protein C10			1	LOC_Os01g42190.1 It is likely that the HSP gene  (LOC_Os01g42190.1) represented Bph33(t) (Sabhavat et al. 2018).	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0606900	LOC_Os01g42190.1				GO:0006950 - response to stress, GO:0002213 - defense response to insect, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000424 - brown planthopper resistance	
12168	_	OsDjC11	_	DnaJ domain protein C11			1			Os01g0634300	LOC_Os01g44310.2, LOC_Os01g44310.1						
12169	_	OsDjC12	_	DnaJ domain protein C12			1	P30287.	 Tolerance and resistance - Stress tolerance						GO:0006950 - response to stress, GO:0009415 - response to water		
12170	_	OsDjC13	_	DnaJ domain protein C13, rice DJC76 homolog			1	a Homolog of Arabidopsis chloroplast J protein. LOC_Os01g53020.		Os01g0730500	LOC_Os01g53020.1				GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0051536 - iron-sulfur cluster binding, GO:0009507 - chloroplast		
12171	_	OsDjC14	_	DnaJ domain protein C14			1		 Tolerance and resistance - Stress tolerance	Os01g0923800	LOC_Os01g69930.1				GO:0006950 - response to stress		
12172	_	OsDjC15, OsP58B	_	DnaJ domain protein C15			1	an ER-resident J-protein. a co-chaperone component of the HSP70 system.	 Tolerance and resistance - Stress tolerance	Os01g0977200	LOC_Os01g74580.2, LOC_Os01g74580.1				GO:0034976 - response to endoplasmic reticulum stress, GO:0034975 - protein folding in endoplasmic reticulum, GO:0006458 - 'de novo' protein folding, GO:0005886 - plasma membrane, GO:0005788 - endoplasmic reticulum lumen		
12173	_	OsDjC16, OsP58A	_	DnaJ domain protein C16			2	an ER-resident J-protein. a co-chaperone component of the HSP70 system.		Os02g0195300	LOC_Os02g10180.2, LOC_Os02g10180.1				GO:0005788 - endoplasmic reticulum lumen, GO:0034975 - protein folding in endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0006458 - 'de novo' protein folding		
12174	_	OsDjC17	_	DnaJ domain protein C17			2			Os02g0195800	LOC_Os02g10220.1						
12175	_	OsDjC18	_	DnaJ domain protein C18			2		 Tolerance and resistance - Stress tolerance	Os02g0510000	LOC_Os02g30620.3, LOC_Os02g30620.2, LOC_Os02g30620.1				GO:0006950 - response to stress		
12176	_	OsDjC19	_	DnaJ domain protein C19			2			Os02g0555700	LOC_Os02g35000.1						
12177	_	OsDjC20	_	DnaJ domain protein C20			2			Os02g0693200	LOC_Os02g46640.1						
12178	_	OsDjC21	_	DnaJ domain protein C21			2			Os02g0741100	LOC_Os02g50760.3, LOC_Os02g50760.2, LOC_Os02g50760.1						
12179	_	OsDjC22	_	DnaJ domain protein C22			2		 Tolerance and resistance - Stress tolerance	Os02g0760000	LOC_Os02g52270.2, LOC_Os02g52270.1				GO:0006950 - response to stress		
12180	_	OsDjC23	_	DnaJ domain protein C23			2			Os02g0782300	LOC_Os02g54130.4, LOC_Os02g54130.3, LOC_Os02g54130.2, LOC_Os02g54130.1						
12181	_	OsDjC24	_	DnaJ domain protein C24			3			Os03g0136800	LOC_Os03g04400.1				GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
12182	_	OsDjC25	_	DnaJ domain protein C25			3			Os03g0198300	LOC_Os03g10180.1						
12183	_	OsDjC26	_	DnaJ domain protein C26			3			Os03g0261500	LOC_Os03g15480.1						
12184	_	OsDjC27	_	DnaJ domain protein C27			3		 Tolerance and resistance - Stress tolerance						GO:0005788 - endoplasmic reticulum lumen, GO:0016491 - oxidoreductase activity, GO:0055114 - oxidation reduction, GO:0009860 - pollen tube growth, GO:0009408 - response to heat		
12185	_	OsDjC28	_	DnaJ domain protein C28			3			Os03g0300600	LOC_Os03g18870.1						
12186	_	OsDjC29	_	DnaJ domain protein C29			3			Os03g0323600	LOC_Os03g20730.1						
12187	_	OsDjC30	_	DnaJ domain protein C30			3		 Tolerance and resistance - Stress tolerance	Os03g0401200	LOC_Os03g28310.1				GO:0006950 - response to stress		
12188	_	OsDjC31	_	DnaJ domain protein C31			3		 Tolerance and resistance - Stress tolerance	Os03g0560400	LOC_Os03g36160.1				GO:0006950 - response to stress		
12189	_	OsDjC32	_	DnaJ domain protein C32			3			Os03g0728100	LOC_Os03g51830.1						
12190	_	OsDjC33	_	DnaJ domain protein C33			3			Os03g0752700	LOC_Os03g54150.2, LOC_Os03g54150.1						
12191	_	OsDjC34	_	DnaJ domain protein C34			3		 Tolerance and resistance - Stress tolerance	Os03g0761700	LOC_Os03g55360.1				GO:0006950 - response to stress		
12192	_	OsDjC35	_	DnaJ domain protein C35			3			Os03g0776900	LOC_Os03g56540.3						
12193	_	OsDjC36	_	DnaJ domain protein C36, rice DJC73 homolog			3	a Homolog of Arabidopsis chloroplast J protein. LOC_Os03g60790.		Os03g0822800	LOC_Os03g60790.3, LOC_Os03g60790.2, LOC_Os03g60790.1						
12194	_	OsDjC37	_	DnaJ domain protein C37			3		 Tolerance and resistance - Stress tolerance	Os03g0831000	LOC_Os03g61550.1				GO:0006950 - response to stress		
12195	_	OsDjC38	_	DnaJ domain protein C38			3		 Tolerance and resistance - Stress tolerance	Os03g0832900	LOC_Os03g61730.1				GO:0006950 - response to stress		
12196	_	OsDjC39	_	DnaJ domain protein C39			3			Os03g0837400	LOC_Os03g62120.1						
12197	_	OsDjC40	_	DnaJ domain protein C40			3			Os03g0837550	LOC_Os03g62130.1						
12198	_	OsDjC41	_	DnaJ domain protein C41			3	LOC_Os03g62140.			LOC_Os03g62140						
12199	_	OsDjC42	_	DnaJ domain protein C42			3			Os03g0837700	LOC_Os03g62150.1						
12200	_	OsDjC43, OsERdj2	_	DnaJ domain protein C43, ER-resident J-protein 2			4	a co-chaperone component of the HSP70 system.		Os04g0307200	LOC_Os04g24180.2, LOC_Os04g24180.1				GO:0009960 - endosperm development, GO:0005739 - mitochondrion, GO:0042735 - protein body, GO:0005886 - plasma membrane, GO:0008565 - protein transporter activity, GO:0030176 - integral to endoplasmic reticulum membrane, GO:0031204 - posttranslational protein targeting to membrane, translocation		
12201	_	OsDjC44	_	DnaJ domain protein C44			4			Os04g0388800	LOC_Os04g31940.1						
12202	_	OsDjC45	_	DnaJ domain protein C45, rice DJC77 homolog			4	a Homolog of Arabidopsis chloroplast J protein. LOC_Os04g57880.		Os04g0675400	LOC_Os04g57880.1						
12203	_	OsDjC46	_	DnaJ domain protein C46, rice DJC72 homolog			4	a homolog of Arabidopsis chloroplast J protein. LOC_Os04g59060.		Os04g0687300	LOC_Os04g59060.2, LOC_Os04g59060.1						
12204	_	OsDjC47	_	DnaJ domain protein C47, rice DJC72 homolog			5	a homolog of Arabidopsis chloroplast J protein. LOC_Os05g01590.		Os05g0106500	LOC_Os05g01590.1						
12205	_	OsDjC48, DjC48	_	DnaJ domain protein C48			5		 Tolerance and resistance - Stress tolerance	Os05g0364500	LOC_Os05g30130.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
12206	_	OsDjC49	_	DnaJ domain protein C49			5			Os05g0374600	LOC_Os05g31062.1						
12207	_	OsDjC50	_	DnaJ domain protein C50, rice DJC82 homolog			5	a Homolog of Arabidopsis chloroplast J protein. LOC_Os05g45350.		Os05g0529700	LOC_Os05g45350.3, LOC_Os05g45350.2, LOC_Os05g45350.1				GO:0009507 - chloroplast, GO:0009055 - electron carrier activity, GO:0051536 - iron-sulfur cluster binding, GO:0005506 - iron ion binding		
12208	_	OsDjC51	_	DnaJ domain protein C51			5			Os05g0543700	LOC_Os05g46620.1						
12209	_	OsDjC52	_	DnaJ domain protein C52			5			Os05g0579900	LOC_Os05g50370.1						
12210	_	OsDjC53	_	DnaJ domain protein C53			6		 Tolerance and resistance - Stress tolerance	Os06g0195800	LOC_Os06g09560.1					TO:0000259 - heat tolerance	
12211	_	OsDjC54	_	DnaJ domain protein C54			6			Os06g0237800	LOC_Os06g13060.1						
12212	_	OsDjC55	_	DnaJ domain protein C55			6		 Tolerance and resistance - Stress tolerance	Os06g0535300	LOC_Os06g34440.1				GO:0006950 - response to stress		
12213	_	OsDjC56	_	DnaJ domain protein C56, rice DJC22 homolog			6	a homolog of Arabidopsis chloroplast J protein. LOC_Os06g44160.		Os06g0650900	LOC_Os06g44160.2, LOC_Os06g44160.1						
12214	_	OsDjC57	_	DnaJ domain protein C57			7			Os07g0124800	LOC_Os07g03270.1						
12215	NAL11	OsDjC58, DjC58	NARROW LEAF 11	DnaJ domain protein C58, narrow leaf 11		nal11	7	LOC_Os07g09450.	 Vegetative organ - Leaf	Os07g0192300	LOC_Os07g09450.1					TO:0000370 - leaf width	
12216	_	OsDjC59	_	DnaJ domain protein C59			7			Os07g0470800	LOC_Os07g28800.1						
12217	_	OsDjC60	_	DnaJ domain protein C60, rice DJC65 homolog			7	a homolog of Arabidopsis chloroplast J protein. LOC_Os07g43330.		Os07g0626400	LOC_Os07g43330.1						
12218	_	OsDjC61	_	DnaJ domain protein C61			7										
12219	_	OsDjC62	_	DnaJ domain protein C62			8			Os08g0452900	LOC_Os08g35160.3, LOC_Os08g35160.2, LOC_Os08g35160.1						
12220	_	OsDjC63	_	DnaJ domain protein C63			8			Os08g0474600	LOC_Os08g36980.2, LOC_Os08g36980.1						
12221	_	OsDjC64	_	DnaJ domain protein C64			8	LOC_Os08g37270.			LOC_Os08g37270				GO:0003677 - DNA binding		
12222	_	OsDjC65	_	DnaJ domain protein C65			8			Os08g0522600	LOC_Os08g41110.1						
12223	_	OsDjC66	_	DnaJ domain protein C66, rice DJC23 homolog			8	a homolog of Arabidopsis chloroplast J protein. LOC_Os08g43490.		Os08g0548400	LOC_Os08g43490.1						
12224	_	OsDjC67	_	DnaJ domain protein C67			9			Os09g0368800	LOC_Os09g20320.1						
12225	_	OsDjC68	_	DnaJ domain protein C68			9		 Tolerance and resistance - Stress tolerance	Os09g0460000	LOC_Os09g28590.3, LOC_Os09g28590.2, LOC_Os09g28590.1				GO:0006950 - response to stress		
12226	_	OsDjC69	_	DnaJ domain protein C69			9			Os09g0463700	LOC_Os09g28890.2, LOC_Os09g28890.1				GO:0003677 - DNA binding		
12227	_	OsDjC70	_	DnaJ domain protein C70			9			Os09g0493800	LOC_Os09g32050.2, LOC_Os09g32050.1						
12228	_	OsDjC71	_	DnaJ domain protein C71			10			Os10g0124600	LOC_Os10g03610.1						
12229	_	OsDjC72	_	DnaJ domain protein C72			10			Os10g0188200	LOC_Os10g11012.1						
12230	_	OsDjC73	_	DnaJ domain protein C73			10			Os10g0507800	LOC_Os10g36370.1				GO:0010228 - vegetative to reproductive phase transition, GO:0055122 - response to very low light intensity stimulus		
12231	_	OsDjC74	_	DnaJ domain protein C74			10			Os10g0575200	LOC_Os10g42439.1				GO:0005783 - endoplasmic reticulum, GO:0005774 - vacuolar membrane, GO:0005802 - trans-Golgi network, GO:0005770 - late endosome, GO:0007033 - vacuole organization, GO:0042594 - response to starvation, GO:0006623 - protein targeting to vacuole, GO:0009959 - negative gravitropism, GO:0007032 - endosome organization, GO:0009793 - embryonic development ending in seed dormancy, GO:0051301 - cell division, GO:0009660 - amyloplast organization		
12232	_	OsDjC75	_	DnaJ domain protein C75			11			Os11g0573800	LOC_Os11g36530.1, LOC_Os11g36520.1						
12233	_	OsDjC76	_	DnaJ domain protein C76			11			Os11g0578100	LOC_Os11g36960.1						
12234	_	OsDjC77	_	DnaJ domain protein C77			11			Os11g0578500	LOC_Os11g37000.1						
12235	_	OsDjC78	_	DnaJ domain protein C78			11			Os11g0661200	LOC_Os11g43950.1				GO:0005886 - plasma membrane, GO:0005829 - cytosol		
12236	_	OsDjC79, OsERdj7	_	DnaJ domain protein C79, ER-resident J-protein 7			12			Os12g0258200	LOC_Os12g15590.2, LOC_Os12g15590.1				GO:0005783 - endoplasmic reticulum		
12237	ISC26	OsDjC80, OsISC26	IRON-SULFUR CLUSTER PROTEIN 26	DnaJ domain protein C80, Iron-sulfur cluster protein 26	IRON-SULFUR CLUSTER PROTEIN 26		12			Os12g0456200	LOC_Os12g27070.1				GO:0006457 - protein folding, GO:0051259 - protein oligomerization		
12238	_	OsDjC81	_	DnaJ domain protein C81			12			Os12g0502700	LOC_Os12g31840.1				GO:0008270 - zinc ion binding		
12239	_	OsDjC82, DjC82, XB21	_	DnaJ domain protein C82, XA21 binding protein 21			12	LOC_Os12g36180. an Auxilin-Like Protein. a type III J-protein.	 Tolerance and resistance - Disease resistance	Os12g0548200	LOC_Os12g36180.1				GO:0005829 - cytosol, GO:0045807 - positive regulation of endocytosis, GO:0005886 - plasma membrane, GO:0010940 - positive regulation of necrotic cell death, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
12240	_	OsDjC83	_	DnaJ domain protein C83			12		 Tolerance and resistance - Stress tolerance	Os12g0612400	LOC_Os12g41820.1				GO:0006950 - response to stress		
12241	_	OsNRR, NRR, NRRa, NRRb, OsCCT18, OsCMF6, CCT18, CMF6, CRCT, Os CRCT	_	"nutrition response and root growth, CCT domain-containing gene 18, CCT (CO, CO-LIKE and TOC1) domain protein 18, CCT domain protein 18, CCT MOTIF FAMILY (CMF) gene 6, \"CO2-Responsive CONSTANS, CONSTANSlike, and Time of Chlorophyll a/b Binding Protein1\""			5	LOC_Os05g51690. GO:2000904: regulation of starch metabolic process.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os05g0595300	LOC_Os05g51690.3, LOC_Os05g51690.2, LOC_Os05g51690.1				GO:0010037 - response to carbon dioxide, GO:0009749 - response to glucose stimulus, GO:0009744 - response to sucrose stimulus, GO:0007623 - circadian rhythm	TO:0000696 - starch content, TO:0000567 - tiller angle	PO:0005417 - phloem , PO:0025034 - leaf , PO:0020104 - leaf sheath 
12242	MIR396A	miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a	MICRORNA396A	MICRORNA396a, osa-miRNA396a	_		2	miRBASE accession: MI0001046.LM383060 LM379291	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0002213 - defense response to insect, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000429 - salt sensitivity	
12243	MIR396B	miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b	MICRORNA396B	MICRORNA396b, osa-miRNA396b	_		6	miRBASE accession: MI0001047.LM383061 LM379292	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Other						GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000290 - flavonoid content, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease	
12244	MIR2121A	miR2121a, osa-miR2121a, osa-MIR2121a	MICRORNA2121A	MICRORNA2121a, osa-miRNA2121a	_		1	miRBASE accession: MI0010709.LM381226	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12245	MIR5159	miR5159, osa-miR5159, osa-MIR5159	MICRORNA5159	MICRORNA5159, osa-miRNA5159	_		11	miRBASE accession: MI0018075. predicted target(s): lactase.LM382904	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12246	MIR1428F	miR1428f, osa-miR1428f, osa-MIR1428f	MICRORNA1428F	MICRORNA1428f, osa-miRNA1428f	_		7	miRBASE accession: MI0010548.	 Other								
12247	MIR1433	miR1433, osa-miR1433, osa-MIR1433	MICRORNA1433	MICRORNA1433, osa-miRNA1433	_			predicted target(s): CCAAT-binding transcription factor.	 Other								
12248	MIR5533	miR5533, osa-miR5533, osa-MIR5533	MICRORNA5533	MICRORNA5533, osa-miRNA5533	_		4	miRBASE accession: MI0019053.	 Other								
12249	MIR810A	miR810a, osa-miR810a, osa-MIR810a	MICRORNA810A	MICRORNA810a, osa-miRNA810a	_			miRBASE accession: MI0005229.LM380040	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12250	MIR169P	miR169p, osa-miR169p	MICRORNA169P	MICRORNA169p, osa-miRNA169p	_		8	miRBASE accession: MI0001131.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12251	_	OsMSH5, MSH5	_	MutS-homolog 5		Osmsh5, Osmsh5-1, Osmsh5-2, Osmsh5-3, Osmsh5-4, Osmsh5-5, msh5	5	a Meiosis-Specific Protein. a rice homolog of MSH5.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Other	Os05g0498300	LOC_Os05g41880.1				GO:0045143 - homologous chromosome segregation, GO:0005524 - ATP binding, GO:0000795 - synaptonemal complex, GO:0007126 - meiosis, GO:0008094 - DNA-dependent ATPase activity, GO:0030983 - mismatched DNA binding, GO:0051026 - chiasma formation, GO:0006298 - mismatch repair, GO:0007131 - reciprocal meiotic recombination		
12252	_	OsZIP4, ZIP4, SPO22	_	ZMM protein OsZIP4, rice ZIP4 homolog		Oszip4, zip4	1	Q5N829. GO:0071139: resolution of recombination intermediates.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0890900	LOC_Os01g66690.1				GO:0007126 - meiosis, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0007131 - reciprocal meiotic recombination, GO:0007140 - male meiosis, GO:0007143 - female meiosis, GO:0009507 - chloroplast, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0007129 - synapsis		
12253	_	HEI10, HEI10A, HEI10B, OsHEI10	_	ZMM protein HEI10, human enhancer of invasion 10		hei10, hei10-1, hei10-2, Oshei10	2	JQ624877, JQ624878. a homolog of human HEI10.  the most likely ortholog of (C. elegans) ZHP-3 and (Yeast) Zip3.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0232100	LOC_Os02g13810.1, LOC_Os02g13810.2				GO:0008270 - zinc ion binding, GO:0007126 - meiosis, GO:0046872 - metal ion binding, GO:0016740 - transferase activity, GO:0051026 - chiasma formation, GO:0016567 - protein ubiquitination, GO:0007131 - reciprocal meiotic recombination, GO:0007129 - synapsis, GO:0005712 - chiasma, GO:0005694 - chromosome		
12254	_	OsDPR	_	dwarf phenotype-related gene			11	DQ434846.	 Tolerance and resistance - Stress tolerance								
12255	_	BRK1	_	Bub1-related kinase 1		brk1, brk1-1, brk1-2	7	the closest plant homolog of Bub1 (budding uninhibited by benzimidazole 1) from animals and yeast. EEC82122, EEE67244, JQ990990.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os07g0508500 	LOC_Os07g32480.1				GO:0000776 - kinetochore, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0051323 - metaphase, GO:0007094 - mitotic cell cycle spindle assembly checkpoint, GO:0007126 - meiosis, GO:0045144 - meiotic sister chromatid segregation, GO:0007067 - mitosis	TO:0000485 - sterility related trait	
12256	IMPA1A	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a	IMPORTIN ALPHA 1A	importin-alpha1a, importin a1a, importin alpha1a	IMPORTIN ALPHA		1	Q71VM4. AB004814, AB004660. a cytoplasm/nuclear shuttle protein.	 Tolerance and resistance - Disease resistance	Os01g0253300 	LOC_Os01g14950.1				GO:0042742 - defense response to bacterium, GO:0005618 - cell wall, GO:0006606 - protein import into nucleus, GO:0005829 - cytosol, GO:0005730 - nucleolus, GO:0048471 - perinuclear region of cytoplasm, GO:0019048 - virus-host interaction, GO:0008565 - protein transporter activity, GO:0005635 - nuclear envelope	TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance	
12257	_	OsVPS22	_	VPS22 component of ESCRT-II complex, ESCRT-II complex VPS22 component		vps22	9	a homolog of the Vps22 subunit of the yeast ESCRT-II complex. LOC_Os09g36020. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Seed - Physiological traits	Os09g0529700	LOC_Os09g36020.1						
12258	FLT1		FLOWERING TIME 1			flt1-1	8	identified by using a late heading mutant (KGM26). FLT1 might share the same locus as EHD3 (Ichitani et al. 2014).	 Reproductive organ - Heading date								
12259	FLT2		FLOWERING TIME 2			flt2-1	9	identified by using a late heading mutant (KGM27).	 Reproductive organ - Heading date								
12260	_	OsECS, ECS	_	gamma-glutamylcysteine synthetase			5	AJ508916. Q8GU95, Q688Q9.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os05g0129000	LOC_Os05g03820.3, LOC_Os05g03820.2, LOC_Os05g03820.1				GO:0010193 - response to ozone, GO:0006750 - glutathione biosynthetic process, GO:0009700 - indole phytoalexin biosynthetic process, GO:0046686 - response to cadmium ion, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding, GO:0004357 - glutamate-cysteine ligase activity, GO:0046688 - response to copper ion, GO:0052544 - callose deposition in cell wall during defense response, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0009908 - flower development, GO:0019761 - glucosinolate biosynthetic process	TO:0000021 - copper sensitivity	
12261	_		_	CentO-binding protein			2	DUF573 domain-containing.		Os02g0288200	LOC_Os02g18660.1						
12262	GLUBX	OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1	GLUTELIN BX	endosperm-specific gene 31, Glutelin2.1	GLUTELIN BX		2	JQ694715, JQ694716. BAF08323. Q0E2G5, A2X2V1. LOC_Os02g14600. GLU2.1 in Xu et al. 2016.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os02g0242600 	LOC_Os02g14600.1				GO:0009791 - post-embryonic development, GO:0009651 - response to salt stress, GO:0009415 - response to water, GO:0000003 - reproduction, GO:0048316 - seed development, GO:0045735 - nutrient reservoir activity	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000237 - water stress trait	PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
12263	CYP714B1	CYP714B1	P-450 714B1	Cytochrome P450 714B1	CYTOCHROME P450 714B1	cyp714b1	7	CYP714B1 encodes gibberellin 13-oxidase. Transgenic Arabidopsis plants that overexpress CYP714B1 show semidwarfism. Q7XHW5.	 Biochemical character	Os07g0681300	LOC_Os07g48330.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0020037 - heme binding		
12264	CYP714B2	CYP714B2	P-450 714B2	Cytochrome P450 714B2	CYTOCHROME P450 714B2	cyp714b2	3	CYP714B2 encodes gibberellin 13-oxidase. Transgenic Arabidopsis plants that overexpress CYP714B2 show semidwarfism. Q0DS59.	 Biochemical character,  Reproductive organ - panicle	Os03g0332100	LOC_Os03g21419.1, LOC_Os03g21400.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
12265	CYP714C1	CYP714C1	P-450 714C1	Cytochrome P450 714C1	CYTOCHROME P450 714C1		12	B9GBJ9.	 Biochemical character	Os12g0118900	LOC_Os12g02630.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0009055 - electron carrier activity		
12266	CYP714C2	CYP714C2	P-450 714C2	Cytochrome P450 714C2	CYTOCHROME P450 714C2		12	Q2QYH7.	 Biochemical character	Os12g0119000	LOC_Os12g02640.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
12267	CYP714C3	CYP714C3	P-450 714C3	Cytochrome P450 714C3	CYTOCHROME P450 714C3		11		 Biochemical character	Os11g0119200	LOC_Os11g02670.1				GO:0008270 - zinc ion binding		
12268	_	OsFH1, FH1	_	Formin homology 1, type I Formin, forming family protein 1, FH2 protein 1, FH2 domain protein 1	_	Osfh1, Osfh1-1, Osfh1-2, Osfh1-3	1	Q8S0F0.	 Vegetative organ - Root	Os01g0897700	LOC_Os01g67240.1				GO:0016021 - integral to membrane, GO:0030036 - actin cytoskeleton organization, GO:0016020 - membrane		
12269	WOX4	OsWOX4, Os WOX4	WUSCHEL-LIKE HOMEOBOX 4	WUSCHEL-related homeobox 4, WUSCHEL-RELATED HOMEOBOX4	WUSCHEL-LIKE HOMEOBOX 4		4	AJ556181. AM234750. Q7XTV3, Q25AM2. JF836159.	 Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Stress tolerance,  Other	Os04g0649400	LOC_Os04g55590.1				GO:0003700 - transcription factor activity, GO:0010073 - meristem maintenance, GO:0009790 - embryonic development, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development	TO:0000276 - drought tolerance, TO:0000620 - embryo development trait, TO:0006017 - meristem identity	
12270	_	FOS1, OsCLE202, CLE202	_	FON2 SPARE1, CLV3/ESR-related 202, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 202			2	AB455110-AB455122. A2X462, Q6Z6T2. AB332053.	 Vegetative organ - Culm,  Vegetative organ - Root	Os02g0324400	LOC_Os02g21890.1				GO:0005576 - extracellular region, GO:0030154 - cell differentiation, GO:0007275 - multicellular organismal development		
12271	_	FCP1, FCP1/Os CLE402, Os CLE402, OsCLE402	_	FON2-LIKE CLE PROTEIN1, CLV3/ESR-related 402, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 402			4	AB354584. AB332065. 	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Leaf	Os04g0473800	LOC_Os04g39770.1				GO:0048366 - leaf development	TO:0000655 - leaf development trait	
12272	_	FCP2	_	FON2-LIKE CLE PROTEIN2			6	AB354585.	 Vegetative organ - Shoot apical meristem(SAM)	Os06g0532500	LOC_Os06g34180.1						
12273	WOX1	Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1	WUSCHEL-LIKE HOMEOBOX 1	WUSCHEL, WUSCHEL-related homeobox 1, WUS Orthologue, TILLERS ABSENT1, TILLERS ABSENT 1, MONOCULM 3	WUSCHEL-LIKE HOMEOBOX 1	tab1-1, wus-1, moc3, moc3-1, moc3-2, srt1	4	AB218894. AM234746. Q33DK0. Q7XM13. WUSCHEL in Ohmori et al. 2013. LOC_Os04g56780. an Ortholog of WUSCHEL. TO:0000792: axillary bud number. KC611108-KC611120 (O. sativa and wild rice species, partial cds).	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Panicle, Mode of branching,  Other	Os04g0663600	LOC_Os04g56780.1				GO:0009735 - response to cytokinin stimulus, GO:0048507 - meristem development, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development	TO:0000346 - tiller number, TO:0000276 - drought tolerance, TO:0000358 - female sterility, TO:0000456 - spikelet number, TO:0000152 - panicle number, TO:0000180 - spikelet fertility	PO:0007073 - 2 formation of axillary shoot stage 
12275	WOX5	OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L	WUSCHEL-LIKE HOMEOBOX 5	WUSCHEL-related homeobox 5	WUSCHEL-LIKE HOMEOBOX 5	wox2l	1	AM234749. Q8LR86, A2WWU7. OsWOX2 in in Nardmann and Werr 2006, Nardmann et al. 2007 and Ohmaori et al. 2013. up-regulated after fertilization (Abiko et al. 2013). WOX2L in Wang et al. 2019. LOC_Os01g62310.	 Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Other	Os01g0840300 	LOC_Os01g62310.1				GO:0048316 - seed development, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0043565 - sequence-specific DNA binding, GO:0009790 - embryonic development, GO:0009960 - endosperm development	TO:0002653 - endosperm storage protein content, TO:0000696 - starch content	PO:0009089 - endosperm 
12277	_	UTR319	_	UV Tolerant Rice 319		utr319	7	Os07g0264900 and Os07g0265100, were predicted to represent the mutant allele.	 Tolerance and resistance - Stress tolerance	Os07g0265100	LOC_Os07g16150.1						
12278	HSP70CP1	OsHsp70CP1	HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 1	heat shock protein 70 chloroplast protein 1	HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 1	oshsp70cp1	5	LOC_Os05g23740. DNAK family protein. GO:0044183: protein folding chaperone.	 Tolerance and resistance - Stress tolerance	Os05g0303000	LOC_Os05g23740.1				GO:0034620 - cellular response to unfolded protein, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0006986 - response to unfolded protein, GO:0042026 - protein refolding, GO:0051085 - chaperone mediated protein folding requiring cofactor, GO:0016887 - ATPase activity, GO:0034605 - cellular response to heat, GO:0051082 - unfolded protein binding, GO:0051787 - misfolded protein binding, GO:0031072 - heat shock protein binding, GO:0042623 - ATPase activity, coupled		
12279	_	OsGDCH	_	glycine decarboxylase H, H protein of glycine cleavage system			10	A3C6G9. A2Z9B8. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0516100	LOC_Os10g37180.1				GO:0005739 - mitochondrion, GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0019464 - glycine decarboxylation via glycine cleavage system, GO:0009579 - thylakoid, GO:0005960 - glycine cleavage complex	TO:0000432 - temperature response trait	
12280	_	Os-NOT2, OsNOT2	_	Negative on TATA less2			2	LOC_Os02g54210.			LOC_Os02g54210						
12281	MIR528	miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2	MICRORNA528	MICRORNA528, osa-miRNA528, os-miRNA528	_	MIR528-A1, MIR528-A2	3	miRBASE accession: MI0003201. LM379808. OsMIR528 target genes: Os03g0129400, Os06g0567900, Os08g0137400, Os06g0154200, and Os07g0570550. GO:1901002: positive regulation of response to salt stress.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other						GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0007568 - aging, GO:0007623 - circadian rhythm, GO:0048573 - photoperiodism, flowering, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000137 - days to heading, TO:0002616 - flowering time	
12282	MIR529A	miR529a, Osa-miR529a, OsmiR529a	MICRORNA529A	MICRORNA529a, osa-miRNA529a, os-miRNA529a	_		2	miRBASE accession: MI0003202. predicted target(s): SBP transcription factors.LM379809	 Reproductive organ - Panicle, Mode of branching,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000050 - inflorescence branching	
12283	_	miR529b, Osa-miR529b, OsmiR529b	_	MICRORNA529b, osa-miRNA529b, os-miRNA529b	_				 Other								
12284	MIR530	miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p	MICRORNA530	MICRORNA530, osa-miRNA530, os-miRNA530	_		4	miRBASE accession: MI0003203. LM379810. predicted target: Os03g0738400.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0009409 - response to cold, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000303 - cold tolerance	
12285	_	OsSNDP1, SNDP1	_	Sec14-nodulin domain-containing protein 1, Sec14-nodulin domain protein 1		Ossndp1, Ossndp1-1	10	OsSNDP1 is functionally orthologous to AtSFH1/COW1. LOC_Os10g03400.	 Biochemical character,  Vegetative organ - Root	Os10g0122600	LOC_Os10g03400.2				GO:0005622 - intracellular, GO:0005215 - transporter activity		
12286	_	OsSNDP2, SNDP2	_	Sec14-nodulin domain-containing protein 2, Sec14-nodulin domain protein 2			2	LOC_Os02g24430.	 Biochemical character	Os02g0440900	LOC_Os02g24430.2, LOC_Os02g24430.1				GO:0005215 - transporter activity, GO:0005622 - intracellular		
12287	_	OsSNDP3, SNDP3	_	Sec14-nodulin domain-containing protein 3, Sec14-nodulin domain protein 3			2	LOC_Os02g04030.	 Biochemical character	Os02g0133200	LOC_Os02g04030.3, LOC_Os02g04030.2, LOC_Os02g04030.1				GO:0005215 - transporter activity, GO:0005622 - intracellular		
12288	_	OsSNDP4, SNDP4	_	Sec14-nodulin domain-containing protein 4, Sec14-nodulin domain protein 4			2	LOC_Os02g04020.	 Biochemical character	Os02g0133100	LOC_Os02g04020.1				GO:0005215 - transporter activity, GO:0005622 - intracellular		
12290	_	OsSNDP6, SNDP6	_	Sec14-nodulin domain-containing protein 6, Sec14-nodulin domain protein 6			5	LOC_Os05g46720.	 Biochemical character	Os05g0545000	LOC_Os05g46720.2, LOC_Os05g46720.1				GO:0005622 - intracellular, GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
12291	_	OsSNDP7, SNDP7	_	Sec14-nodulin domain-containing protein 7, Sec14-nodulin domain protein 7			8	LOC_Os08g25310.	 Biochemical character	Os08g0341700	LOC_Os08g25310.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0005622 - intracellular		
12292	_	OsSNDP8, SNDP8	_	Sec14-nodulin domain-containing protein 8, Sec14-nodulin domain protein 8			2	LOC_Os02g48990.		Os02g0721800	LOC_Os02g48990.1						
12293	_	OsSNDP9, SNDP9	_	Sec14-nodulin domain-containing protein 9, Sec14-nodulin domain protein 9			8	LOC_Os08g38850.	 Biochemical character	Os08g0497300	LOC_Os08g38850.2, LOC_Os08g38850.1				GO:0005215 - transporter activity, GO:0005622 - intracellular		
12294	_	OsSNDP10, SNDP10	_	Sec14-nodulin domain-containing protein 10, Sec14-nodulin domain protein 10			9	LOC_Os09g30330.		Os09g0481100	LOC_Os09g30330.1						
12295	_	EMP5, Os EMP5, OsEMP5	_	Empty Pericarp5			1	Rice EMP5 protein is a putative ortholog of EMP5 in maize (ZmEMP5). Rice Emp5 is essential to seed development in rice.	 Seed	Os01g0959600	LOC_Os01g72930.1						
12296	MADS61	OsMADS61, MADS-27b	MADS BOX GENE 61	MADS box gene61, MADS box gene 61, MADS-box transcription factor 61	MADS-BOX TRANSCRIPTION FACTOR 61		4	MADS-27b in Yan et al. 2014. one of the miR444 target genes.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0461300	LOC_Os04g38780.1, LOC_Os04g38770.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0016036 - cellular response to phosphate starvation, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000168 - abiotic stress trait	
12297	MADS59	OsMADS59	MADS BOX GENE 59	MADS box gene59, MADS box gene 59, MADS-box transcription factor 59	MADS-BOX TRANSCRIPTION FACTOR 59		6		 Other	Os06g0347700	LOC_Os06g23980.1, LOC_Os06g23950.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
12298	MADS60	OsMADS60	MADS BOX GENE 60	MADS box gene60, MADS box gene 60, MADS-box transcription factor 60	MADS-BOX TRANSCRIPTION FACTOR 60		2			Os02g0104200	LOC_Os02g01365.1, LOC_Os02g01360.1						
12299	MADS62	OsMADS62	MADS BOX GENE 62	MADS box gene62, MADS box gene 62, MADS-box transcription factor 62	MADS-BOX TRANSCRIPTION FACTOR 62		8	FM956504.	 Other	Os08g0494100	LOC_Os08g38590.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
12300	MADS63	OsMADS63	MADS BOX GENE 63	MADS box gene63, MADS box gene 63, MADS-box transcription factor 63	MADS-BOX TRANSCRIPTION FACTOR 63	mads63	6	FN663130.	 Other	Os06g0223300	LOC_Os06g11970.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
12301	MADS64	OsMADS64	MADS BOX GENE 64	MADS box gene64, MADS box gene 64, MADS-box transcription factor 64	MADS-BOX TRANSCRIPTION FACTOR 64		4	LOC_Os04g31804.			LOC_Os04g31804						
12302	MADS66	OsMADS66	MADS BOX GENE 66	MADS box gene66, MADS box gene 66, MADS-box transcription factor 66	MADS-BOX TRANSCRIPTION FACTOR 66		5	LOC_Os05g11380.			LOC_Os05g11380						
12303	MADS67	OsMADS67	MADS BOX GENE 67	MADS box gene67, MADS box gene 67, MADS-box transcription factor 67	MADS-BOX TRANSCRIPTION FACTOR 67		12	LOC_Os12g31010 (not found in MSU Rice Genome Annotation Project Release 7 data). ABA98556 (Record removed).									
12304	MADS68	OsMADS68	MADS BOX GENE 68	MADS box gene68, MADS box gene 68, MADS-box transcription factor 68	MADS-BOX TRANSCRIPTION FACTOR 68		11	FM956505.	 Other	Os11g0658700	LOC_Os11g43740.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
12305	MADS69	OsMADS69	MADS BOX GENE 69	MADS box gene69, MADS box gene 69, MADS-box transcription factor 69	MADS-BOX TRANSCRIPTION FACTOR 69		8	LOC_Os08g20460 (not found in MSU Rice Genome Annotation Project Release 7 data).									
12306	MADS70	OsMADS70	MADS BOX GENE 70	MADS box gene70, MADS box gene 70, MADS-box transcription factor 70	MADS-BOX TRANSCRIPTION FACTOR 70		5		 Other	Os05g0303400	LOC_Os05g23780.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
12307	MADS71	OsMADS71	MADS BOX GENE 71	MADS box gene71, MADS box gene 71, MADS-box transcription factor 71	MADS-BOX TRANSCRIPTION FACTOR 71		6		 Other	Os06g0333700	LOC_Os06g22760.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
12308	MADS72	OsMADS72	MADS BOX GENE 72	MADS box gene72, MADS box gene 72, MADS-box transcription factor 72	MADS-BOX TRANSCRIPTION FACTOR 72		3	LOC_Os03g14850. Os03g0253400 (in Rap1 (build3) ,Rap2 (build4)).	 Other		LOC_Os03g14850				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
12309	MADS73	OsMADS73	MADS BOX GENE 73	MADS box gene73, MADS box gene 73, MADS-box transcription factor 73	MADS-BOX TRANSCRIPTION FACTOR 73		12		 Other	Os12g0407000	LOC_Os12g21850.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
12310	MADS74	OsMADS74	MADS BOX GENE 74	MADS box gene74, MADS box gene 74, MADS-box transcription factor 74	MADS-BOX TRANSCRIPTION FACTOR 74		12		 Other						GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
12311	MADS75	OsMADS75	MADS BOX GENE 75	MADS box gene75, MADS box gene 75, MADS-box transcription factor 75	MADS-BOX TRANSCRIPTION FACTOR 75		6		 Other	Os06g0504100	LOC_Os06g30810.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
12312	MADS76	OsMADS76	MADS BOX GENE 76	MADS box gene76, MADS box gene 76, MADS-box transcription factor 76	MADS-BOX TRANSCRIPTION FACTOR 76		6										
12313	MADS77	OsMADS77	MADS BOX GENE 77	MADS box gene77, MADS box gene 77, MADS-box transcription factor 77	MADS-BOX TRANSCRIPTION FACTOR 77		9			Os09g0116000	LOC_Os09g02780.1						
12314	MADS78	OsMADS78	MADS BOX GENE 78	MADS box gene78, MADS box gene 78, MADS-box transcription factor 78	MADS-BOX TRANSCRIPTION FACTOR 78		9	LOC_Os09g02830.	 Other	Os09g0116800	LOC_Os09g02830.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
12315	MADS79	OsMADS79	MADS BOX GENE 79	MADS box gene79, MADS box gene 79, MADS-box transcription factor 79	MADS-BOX TRANSCRIPTION FACTOR 79		1		 Other	Os01g0975800	LOC_Os01g74440.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
12316	MADS80	OsMADS80	MADS BOX GENE 80	MADS box gene80, MADS box gene 80, MADS-box transcription factor 80	MADS-BOX TRANSCRIPTION FACTOR 80		2		 Other	Os02g0164450	LOC_Os02g06860.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
12317	MADS81	OsMADS81	MADS BOX GENE 81	MADS box gene81, MADS box gene 81, MADS-box transcription factor 81	MADS-BOX TRANSCRIPTION FACTOR 81		4	LOC_Os04g24790.	 Other		LOC_Os04g24790				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
12318	MADS82	OsMADS82	MADS BOX GENE 82	MADS box gene82, MADS box gene 82, MADS-box transcription factor 82	MADS-BOX TRANSCRIPTION FACTOR 82		4		 Other	Os04g0313200	LOC_Os04g24800.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
12319	MADS83	OsMADS83	MADS BOX GENE 83	MADS box gene83, MADS box gene 83, MADS-box transcription factor 83	MADS-BOX TRANSCRIPTION FACTOR 83		4		 Other	Os04g0313400	LOC_Os04g24810.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
12320	MADS84	OsMADS84	MADS BOX GENE 84	MADS box gene84, MADS box gene 84, MADS-box transcription factor 84	MADS-BOX TRANSCRIPTION FACTOR 84		4		 Other	Os04g0324900	LOC_Os04g25870.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
12321	MADS85	OsMADS85	MADS BOX GENE 85	MADS box gene85, MADS box gene 85, MADS-box transcription factor 85	MADS-BOX TRANSCRIPTION FACTOR 85		4	LOC_Os04g25920.	 Other		LOC_Os04g25920				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
12322	MADS86	OsMADS86	MADS BOX GENE 86	MADS box gene86, MADS box gene 86, MADS-box transcription factor 86	MADS-BOX TRANSCRIPTION FACTOR 86		3	LOC_Os03g37670.	 Other		LOC_Os03g37670				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
12323	MADS87	OsMADS87	MADS BOX GENE 87	MADS box gene87, MADS box gene 87, MADS-box transcription factor 87	MADS-BOX TRANSCRIPTION FACTOR 87		3	LOC_Os03g38610. GO:0000987: proximal promoter sequence-specific DNA binding.	 Other	Os03g0582400	LOC_Os03g38610.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0046983 - protein dimerization activity		
12324	MADS88	OsMADS88	MADS BOX GENE 88	MADS box gene88, MADS box gene 88, MADS-box transcription factor 88	MADS-BOX TRANSCRIPTION FACTOR 88		1	LOC_Os01g18420.	 Other		LOC_Os01g18420				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
12325	MADS89	OsMADS89	MADS BOX GENE 89	MADS box gene89, MADS box gene 89, MADS-box transcription factor 89	MADS-BOX TRANSCRIPTION FACTOR 89		1		 Other	Os01g0288100	LOC_Os01g18440.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
12326	MADS90	OsMADS90	MADS BOX GENE 90	MADS box gene90, MADS box gene 90, MADS-box transcription factor 90	MADS-BOX TRANSCRIPTION FACTOR 90		7			Os07g0133900	LOC_Os07g04170.1						
12327	MADS91	OsMADS91	MADS BOX GENE 91	MADS box gene91, MADS box gene 91, MADS-box transcription factor 91	MADS-BOX TRANSCRIPTION FACTOR 91		1			Os01g0213300	LOC_Os01g11510.1						
12328	MADS92	OsMADS92	MADS BOX GENE 92	MADS box gene92, MADS box gene 92, MADS-box transcription factor 92	MADS-BOX TRANSCRIPTION FACTOR 92		1			Os01g0340000	LOC_Os01g23750.1						
12329	MADS93	OsMADS93	MADS BOX GENE 93	MADS box gene93, MADS box gene 93, MADS-box transcription factor 93	MADS-BOX TRANSCRIPTION FACTOR 93		1		 Other	Os01g0340100	LOC_Os01g23760.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
12330	MADS94	OsMADS94	MADS BOX GENE 94	MADS box gene94, MADS box gene 94, MADS-box transcription factor 94	MADS-BOX TRANSCRIPTION FACTOR 94		1			Os01g0340200	LOC_Os01g23770.1						
12331	MADS95	OsMADS95	MADS BOX GENE 95	MADS box gene95, MADS box gene 95, MADS-box transcription factor 95	MADS-BOX TRANSCRIPTION FACTOR 95		1			Os01g0340400	LOC_Os01g23780.1						
12332	MADS96	OsMADS96	MADS BOX GENE 96	MADS box gene96, MADS box gene 96, MADS-box transcription factor 96	MADS-BOX TRANSCRIPTION FACTOR 96		1		 Other	Os01g0906300	LOC_Os01g67890.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
12333	MADS97	OsMADS97	MADS BOX GENE 97	MADS box gene97, MADS box gene 97, MADS-box transcription factor 97	MADS-BOX TRANSCRIPTION FACTOR 97		1			Os01g0912400	LOC_Os01g68420.1				GO:0003677 - DNA binding		
12334	MADS98	OsMADS98	MADS BOX GENE 98	MADS box gene98, MADS box gene 98, MADS-box transcription factor 98	MADS-BOX TRANSCRIPTION FACTOR 98		1			Os01g0913900	LOC_Os01g68560.1						
12335	MADS99	OsMADS99	MADS BOX GENE 99	MADS box gene99, MADS box gene 99, MADS-box transcription factor 99	MADS-BOX TRANSCRIPTION FACTOR 99		4			Os04g0325600	LOC_Os04g25930.1						
12336	MADS37	OsMADS37	MADS BOX GENE 37	MADS box gene37, MADS box gene 37, MADS-box transcription factor 37	MADS-BOX TRANSCRIPTION FACTOR 37		8		 Other	Os08g0531900	LOC_Os08g41960.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
12338	RLCK185	OsRLCK185	RECEPTOR-LIKE CYTOPLASMIC KINASE 185	Receptor-like Cytoplasmic Kinase 185	RECEPTOR-LIKE CYTOPLASMIC KINASE 185		5	LOC_Os05g30870. a rice ortholog of PBL27. GO:0035420: MAPK cascade involved in innate immune response.	 Tolerance and resistance - Disease resistance	Os05g0372100	LOC_Os05g30870.3, LOC_Os05g30870.2, LOC_Os05g30870.1				GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010200 - response to chitin, GO:0032491 - detection of molecule of fungal origin, GO:0043410 - positive regulation of MAPKKK cascade, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance, TO:0000439 - fungal disease resistance, TO:0000074 - blast disease	
12339	RLCK55	OsRLCK55	RECEPTOR-LIKE CYTOPLASMIC KINASE 55	Receptor-like Cytoplasmic Kinase 55	RECEPTOR-LIKE CYTOPLASMIC KINASE 55		1	LOC_Os01g71000.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os01g0936100	LOC_Os01g71000.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding	TO:0000175 - bacterial blight disease resistance	
12340	_	OsCOX11, COX11	_	cytochrome oxidase 11			3	a nuclear-encoded mitochondrial protein. GO:1904960: positive regulation of cytochrome-c oxidase activity.		Os03g0718600					GO:0032592 - integral to mitochondrial membrane, GO:0043621 - protein self-association, GO:0005507 - copper ion binding, GO:0010101 - post-embryonic root morphogenesis, GO:0009846 - pollen germination		
12341	_	WA352	_	Wild Abortive 352			Mt	a causal gene for Wild Abortive CMS (CMS-WA). JX131325.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion, GO:0016021 - integral to membrane	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009071 - anther wall tapetum 
12342	_	Rf4, Rf-4, PPR782a, PPR9, PPR3	_	restorer-of-fertility 4, fertility restorer 4, pentatricopeptide repeat (PPR)-encoding gene 782a, pentatricopeptide repeat-containing protein 782a, pentatricopeptide repeat protein 9, pentatricopeptide repeat motif containing gene 3, PPR motif-containing gene 3		rf4, Rf4-M, rf4-j, rf4-i, PPR9-782-M, PPR9-782-N, PPR9-782-I, PPR9-782-ZH, PPR9-409-J, PPR9-409-Z, PPR9-409-93	10	LOC_Os10g35240. AB110443. AB900792. Two genes PPR683 and PPR762 were considered as candidate genes in the Rf4 locus. KJ680247-KJ680250. PPR3 in Ngangkham et al. 2010. PPR9 in Tang et al. 2014. PPR782a in Kazama and Toriyama 2014.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os10g0495200	LOC_Os10g35240.2, LOC_Os10g35240.1				GO:0005739 - mitochondrion	TO:0000308 - male fertility restoration trait, TO:0000421 - pollen fertility	
12343	CYP71Z2	Oscyp71Z2	P-450 71Z2	Cytochrome P450 71Z2	CYTOCHROME P450 71Z2		7	LOC_Os07g11739. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0217600 	LOC_Os07g11739.1				GO:0004497 - monooxygenase activity, GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding		
12344	CYP71Z1	Oscyp71Z1	P-450 71Z1	Cytochrome P450 71Z1	CYTOCHROME P450 71Z1		4	LOC_Os04g27020. Os04g0339000 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os04g27020				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0004497 - monooxygenase activity		
12345	CYP71Z3	Oscyp71Z3	P-450 71Z3	Cytochrome P450 71Z3	CYTOCHROME P450 71Z3		10		 Biochemical character	Os10g0439700 	LOC_Os10g30380.1				GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
12346	CYP71Z4	Oscyp71Z4	P-450 71Z4	Cytochrome P450 71Z4	CYTOCHROME P450 71Z4		10	AK287479.	 Biochemical character	Os10g0439800 	LOC_Os10g30390.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity		
12347	CYP71Z5	Oscyp71Z5	P-450 71Z5	Cytochrome P450 71Z5	CYTOCHROME P450 71Z5		2		 Biochemical character	Os02g0529800 	LOC_Os02g32770.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity		
12348	CYP71Z8	Oscyp71Z8	P-450 71Z8	Cytochrome P450 71Z8	CYTOCHROME P450 71Z8		10		 Biochemical character	Os10g0439924	LOC_Os10g30410.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0009055 - electron carrier activity		
12349	TA2	ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1	THICK ALEURONE 2	REPRESSOR OF SILENCING 1a, thick aleurone 2		ros1a, ta2-1, ta2-2, ta2-3, ta2-4, ta2-5, ta2-6	1	a rice homolog of DME (DEMETER family DNA glycosylases). ROS ortholog. LOC_Os01g11900. 5-methylcytosine DNA glycosylase. TO:0000942: aleurone layer morphology trait. GO:0035514: DNA demethylase activity.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances	Os01g0217900/Os01g0218032					GO:0007292 - female gamete generation, GO:0048232 - male gamete generation, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0005634 - nucleus, GO:0048229 - gametophyte development, GO:0080111 - DNA demethylation, GO:0006284 - base-excision repair, GO:0046872 - metal ion binding, GO:0016787 - hydrolase activity, GO:0003677 - DNA binding, GO:0009790 - embryonic development, GO:0009960 - endosperm development, GO:0010162 - seed dormancy	TO:0000253 - seed dormancy, TO:0000184 - seed anatomy and morphology trait, TO:0000598 - protein content, TO:0000465 - mineral and ion content related trait, TO:0002642 - dietary fiber related trait, TO:0000104 - floury endosperm, TO:0000602 - total fat content	
12350	_	ROS1B	_	REPRESSOR OF SILENCING 1B			2	a rice homolog of DME (DEMETER family DNA glycosylases). ROS1 ortholog. LOC_Os02g29230.	 Biochemical character	Os02g0494700	LOC_Os02g29230.1				GO:0004519 - endonuclease activity, GO:0006284 - base-excision repair, GO:0051539 - 4 iron, 4 sulfur cluster binding		
12352	_	OsRRMh, RRMh	_	OsRRM homologue			9	HE995412. a Spen-like Gene. LOC_Os09g34070.	 Character as QTL - Yield and productivity	Os09g0516300	LOC_Os09g34070.2, LOC_Os09g34070.1				GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding	TO:0000449 - grain yield per plant	
12353	_	OsRRM	_	RNA recognition motif			9	a Spen-like rice gene.		Os09g0298700	LOC_Os09g12730.2, LOC_Os09g12730.1				GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
12354	_	OsSSI2	_	fatty-acid desaturase OsSSI2		Osssi2-Tos17	1	a rice homolog of Arabidopsis SSI2 (suppressor of salicylateinsensitivity of npr1-5). Q8S059.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0919900	LOC_Os01g69080.1				GO:0004768 - stearoyl-CoA 9-desaturase activity, GO:0046914 - transition metal ion binding, GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity, GO:0009570 - chloroplast stroma, GO:0006633 - fatty acid biosynthetic process, GO:0051607 - defense response to virus, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium		
12355	KRP2	OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2	KIP-RELATED PROTEIN 2	Cyclin-dependent kinase inhibitor 2, KIP-related protein 2, inhibitor of cyclin-dependent kinase 2	KIP-RELATED PROTEIN 2		6	LOC_Os06g11050. Q283L3. DQ229363. 	 Biochemical character	Os06g0213700	LOC_Os06g11050.1				GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0007050 - cell cycle arrest, GO:0006469 - negative regulation of protein kinase activity, GO:0005634 - nucleus		PO:0020094 - plant egg cell 
12356	KRP3	OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3	KIP-RELATED PROTEIN 3	Cyclin-dependent kinase inhibitor 3, KIP-related protein 3, inhibitor of cyclin-dependent kinase 3	KIP-RELATED PROTEIN 3		11	LOC_Os11g40030. Q2R185. DQ229364. KRP6/7 homolog in Wang et al. 2013.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0614800	LOC_Os11g40030.2, LOC_Os11g40030.1				GO:0005634 - nucleus, GO:0007050 - cell cycle arrest, GO:0006469 - negative regulation of protein kinase activity, GO:0004861 - cyclin-dependent protein kinase inhibitor activity	TO:0000350 - cms-hl type	
12357	KRP6	OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6	KIP-RELATED PROTEIN 6	Cyclin-dependent kinase inhibitor 4, KIP-related protein 6, inhibitor of cyclin-dependent kinase 4	KIP-RELATED PROTEIN 6		9	Q67J15. BI306406.	 Biochemical character	Os09g0459900	LOC_Os09g28580.1				GO:0007050 - cell cycle arrest, GO:0005634 - nucleus, GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0009737 - response to abscisic acid stimulus, GO:0006469 - negative regulation of protein kinase activity	TO:0000615 - abscisic acid sensitivity	
12358	KRP5	OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5	KIP-RELATED PROTEIN 5	Cyclin-dependent kinase inhibitor 5, KIP-related protein 5, inhibitor of cyclin-dependent kinase 5	KIP-RELATED PROTEIN 5		3	Q283L0. DQ229366.	 Biochemical character	Os03g0137800	LOC_Os03g04490.1				GO:0007050 - cell cycle arrest, GO:0006469 - negative regulation of protein kinase activity, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0004861 - cyclin-dependent protein kinase inhibitor activity	TO:0000615 - abscisic acid sensitivity	
12359	KRP4	OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6	KIP-RELATED PROTEIN 4	Cyclin-dependent kinase inhibitor 6, KIP-related protein 4, inhibitor of cyclin-dependent kinase 6	KIP-RELATED PROTEIN 4		10	BGIOSGA031706. Q7XDH8. AAG16867. Ancient CDK inhibitor DNA sequences of rice (Oryza sativa and other wild rice): JN169837-JN169841, JN169844-JN169856, JN169857, JN169858-JN169866, JN169867, JN169868-JN169879, JN169880-JN169885.	 Biochemical character	Os10g0471700	LOC_Os10g33310.1				GO:0009737 - response to abscisic acid stimulus, GO:0007050 - cell cycle arrest, GO:0005634 - nucleus, GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0006469 - negative regulation of protein kinase activity	TO:0000615 - abscisic acid sensitivity	
12360	CYCD2;1	CycD2;1, CYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2	D-TYPE CYCLIN 2;1	Cyclin-D2-1, cyclinD2;1	D-TYPE CYCLIN 2;1		7	Q8LHA8. Orysa;CycD2;2 in Mizutani et al. 2010. LOC_Os07g42860.	 Biochemical character	Os07g0620800	LOC_Os07g42860.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0005634 - nucleus		
12361	CYCA2;1	CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2	CYCLIN-A2-1	A-type cyclin 2;1	CYCLIN-A2-1		12	Q2QQ96. LOC_Os12g31810. CYCA2.2 in Xu et al. 2014.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root	Os12g0502300	LOC_Os12g31810.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus, GO:0042023 - DNA endoreduplication, GO:0051301 - cell division, GO:0010374 - stomatal complex development, GO:0048367 - shoot development, GO:0048364 - root development, GO:0030154 - cell differentiation	TO:0000227 - root length, TO:0000566 - stomatal frequency, TO:0000207 - plant height	
12362	CYCD4;1	CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1	D-TYPE CYCLIN 4;1	Cyclin-D2-1, cyclinD2;1, Cyclin-D4-1, cyclinD4;1	D-TYPE CYCLIN 4;1		9	Q6YXH8. OsCYCD2;1 in Yang et al. 2010.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0466100	LOC_Os09g29100.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0051726 - regulation of cell cycle, GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium	TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance	
12363	_	RD22, OsBURP03, OsBURP3	_	BURP domain-containing protein 3			1	Q942D4. a BURP domain-containing protein.	 Tolerance and resistance - Stress tolerance	Os01g0733500	LOC_Os01g53240.1						
12364	PLDeta2	OsPLDeta2	PHOSPHOLIPASE D eta 2		PHOSPHOLIPASE D eta 2		8	AP005388.	 Biochemical character						GO:0004630 - phospholipase D activity, GO:0070290 - NAPE-specific phospholipase D activity, GO:0046470 - phosphatidylcholine metabolic process, GO:0046466 - membrane lipid catabolic process, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding		
12365	_	ONI1	_	ONION1		oni1, oni1-1, oni1-2	3	ONI1 encodes a fatty acid elongase (beta-ketoacyl CoA synthase). GO:0080167:response to karrikin.	 Biochemical character	Os03g0181500	LOC_Os03g08360.4, LOC_Os03g08360.3, LOC_Os03g08360.1				GO:0009409 - response to cold, GO:0009913 - epidermal cell differentiation, GO:0009416 - response to light stimulus, GO:0006633 - fatty acid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0000038 - very-long-chain fatty acid metabolic process, GO:0042335 - cuticle development		
12366	_	ONI2	_	ONION2		oni2, oni2-1, oni2-2, oni2-3, oni2-4, oni2-5	10	a fatty acid elongase.	 Biochemical character	Os10g0416200	LOC_Os10g28060.1				GO:0006633 - fatty acid biosynthetic process, GO:0016020 - membrane, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
12368	_	OsFBH1, OsbHLH112	_	FLOWERING BHLH 1, basic helix-loop-helix protein 112			8	a rice homolog of Arabidopsis FBH. LOC_Os08g39630.	 Reproductive organ - Heading date	Os08g0506700	LOC_Os08g39630.1					TO:0002616 - flowering time	
12369	_	OsAAE3, AAE3, OsOCS, OCS	_	Acyl-Activating Enzyme 3, adenosine monophosphate binding protein 3, acyl activation enzyme 3, oxalyl-CoA synthetase			4	the orthologous gene of maize Opaque7 (O7). AU076256, AU076257. the AtAAE3 homolog. LOC_Os04g58710. GO:0097468: programmed cell death in response to reactive oxygen species. TO:0000869: glume anatomy and morphology trait. GO:1901141: regulation of lignin biosynthetic process. GO:1900150: regulation of defense response to fungus.	 Reproductive organ - Pollination, fertilization, fertility,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0683700	LOC_Os04g58710.1				GO:0009908 - flower development, GO:0009809 - lignin biosynthetic process, GO:0005737 - cytoplasm, GO:0012501 - programmed cell death, GO:0033611 - oxalate catabolic process, GO:0003824 - catalytic activity, GO:0009735 - response to cytokinin stimulus, GO:0042742 - defense response to bacterium, GO:0009507 - chloroplast, GO:0042743 - hydrogen peroxide metabolic process, GO:0050203 - oxalate-CoA ligase activity, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0048046 - apoplast, GO:0009570 - chloroplast stroma, GO:0009506 - plasmodesma, GO:0005829 - cytosol, GO:0010214 - seed coat development, GO:0010044 - response to aluminum ion, GO:0010030 - positive regulation of seed germination, GO:0009910 - negative regulation of flower development	TO:0000175 - bacterial blight disease resistance, TO:0000080 - micronutrient sensitivity, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000622 - flower development trait, TO:0000731 - lignin content, TO:0000420 - fertility related trait, TO:0000432 - temperature response trait	PO:0006016 - leaf epidermis , PO:0007615 - flower development stage 
12370	_	Cen8.t00793	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21700.		Os08g0308700	LOC_Os08g21700.1				GO:0009507 - chloroplast, GO:0005507 - copper ion binding, GO:0009308 - amine metabolic process, GO:0048038 - quinone binding		
12371	_	Cen8.t00802	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21720.			LOC_Os08g21720						
12372	_	Cen8.t00808	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21760.		Os08g0309300	LOC_Os08g21760.1				GO:0045185 - maintenance of protein location, GO:0016021 - integral to membrane		
12373	_	Cen8.t00833	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21840.		Os08g0310100	LOC_Os08g21840.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0015934 - large ribosomal subunit		
12374	_	Cen8.t00849	_				8	a Cen8 (centromere of chromosome 8) Active Gene.									
12375	_	Cen8.t00960	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22200.		Os08g0313600	LOC_Os08g22200.1						
12376	_	Cen8.t01003, OsPABPC2, PABPC2	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22354. a homolog of AtPABP8. SGs (stress granules) marker.		Os08g0314800	LOC_Os08g22354.2, LOC_Os08g22354.1				GO:0000166 - nucleotide binding, GO:0003723 - RNA binding		
12377	_	Cen8.t01009	_				8	a Cen8 (centromere of chromosome 8) Active Gene.									
12378	_	Cen8.t01152	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22852.		Os08g0318400	LOC_Os08g22852.1						
12379	_	Cen8.t01153	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22864.		Os08g0318500	LOC_Os08g22864.2, LOC_Os08g22864.1				GO:0009846 - pollen germination, GO:0009860 - pollen tube growth, GO:0015031 - protein transport, GO:0006904 - vesicle docking during exocytosis, GO:0000145 - exocyst, GO:0048354 - mucilage biosynthetic process during seed coat development, GO:0005886 - plasma membrane, GO:0005829 - cytosol		
12380	KRP7	Orysa;KRP7	KIP-RELATED PROTEIN 7	KIP-related protein 7	KIP-RELATED PROTEIN 7		1	LOC_Os01g37740.	 Biochemical character		LOC_Os01g37740				GO:0016301 - kinase activity		
12381	_	OsTCP10, OsSTA77, TCP10, STA77	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 10			2	LOC_Os02g51310. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g51310				GO:0005634 - nucleus, GO:0005739 - mitochondrion, GO:0009507 - chloroplast		PO:0009066 - anther , PO:0001016 - L mature pollen stage 
12382	_	OsTCP17, TCP17	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 17			4	LOC_Os04g44440.	 Tolerance and resistance - Stress tolerance	Os04g0526000	LOC_Os04g44440.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009507 - chloroplast	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0007131 - seedling development stage , PO:0007041 - inflorescence emergence stage 
12383	_	OsTCP18, TCP18	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 18			5	LOC_Os05g43760.	 Tolerance and resistance - Stress tolerance	Os05g0513100	LOC_Os05g43760.1				GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005634 - nucleus	TO:0000276 - drought tolerance	
12384	_	OsTCP19, TCP19	_	"TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 19, \"Teosinte branched1, Cycloidea, Proliferating cell factor (TCP)-domain protein 19\", TCP-domain protein 19"			6	LOC_Os06g12230.	 Tolerance and resistance - Stress tolerance	Os06g0226700	LOC_Os06g12230.1				GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0034389 - lipid particle organization, GO:0032502 - developmental process, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009628 - response to abiotic stimulus, GO:0009409 - response to cold, GO:0006325 - chromatin organization, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	
12385	_	OsTCP20, TCP20	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 20			7	LOC_Os07g04510.			LOC_Os07g04510				GO:0005634 - nucleus		
12386	_	OsTCP21, TCP21	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 21			7	LOC_Os07g05720.		Os07g0152000	LOC_Os07g05720.1				GO:0005634 - nucleus		
12387	_	OsTCP22, OsTCP15, TCP22, TCP15	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 22			8	LOC_Os08g33530. OsTCP22 in Sharma et al. 2010.		Os08g0432300	LOC_Os08g33530.1				GO:0005634 - nucleus		
12388	REP1	OsTCP24, REP1, TCP24, SDP1, SDP1/REP1	RETARDED PALEA 1	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 24, RETARDED PALEA1, SMALL DEGENERATIVE PALEA 1.		rep1, rep1-1, rep1-2, rep1-3(sdp1)	9	EU702407. LOC_Os09g24480. SDP1/REP1 is downstreamly regulated by DP1 (Yun Jin et al. 2011). 	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0410500	LOC_Os09g24480.1				GO:0005634 - nucleus		
12389	_	OsTCP25, TCP25	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 25			9	LOC_Os09g34950.	 Seed - Morphological traits - Endosperm	Os09g0521300	LOC_Os09g34950.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0009089 - endosperm 
12390	_	OsTCP27, TCP27	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 27			12	LOC_Os12g02090.			LOC_Os12g02090				GO:0009507 - chloroplast, GO:0005634 - nucleus, GO:0005739 - mitochondrion		
12391	_	OsTCP28, TCP28	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 28			12	LOC_Os12g07480.		Os12g0173300	LOC_Os12g07480.1				GO:0005634 - nucleus		
12392	_	OsTCP5, TCP5	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5, TEOSINTE BRANCHED1/CYCLOIDEA/PCFs 5, TEOSINTE BRANCHED1/ CYCLOIDEA/PCF transcription factor 5, TCP transcription factor 5			1	LOC_Os01g55750. TO:0000794: axillary bud prominence.	 Tolerance and resistance - Stress tolerance	Os01g0763200	LOC_Os01g55750.3, LOC_Os01g55750.2, LOC_Os01g55750.1				GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0009736 - cytokinin mediated signaling, GO:0005739 - mitochondrion, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009755 - hormone-mediated signaling, GO:0009651 - response to salt stress	TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000544 - mesocotyl length, TO:0006001 - salt tolerance, TO:0000401 - plant growth hormone sensitivity	
12393	_	OsTCP6, TCP6	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 6			1	LOC_Os01g69980.	 Tolerance and resistance - Stress tolerance	Os01g0924400	LOC_Os01g69980.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005739 - mitochondrion, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
12394	_	OsTCP7, CHE, TCP7	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 7			2	a rice ortholog of Arabidopsis gene for circadian clock component. LOC_Os02g42380.	 Tolerance and resistance - Stress tolerance	Os02g0635800	LOC_Os02g42380.1				GO:0007623 - circadian rhythm, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
12395	_	OsTCP9, TCP9	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 9			2	LOC_Os02g51280.		Os02g0747400	LOC_Os02g51280.1				GO:0005634 - nucleus		
12396	_		_	Aurora-B			1	one M-phase-expressed gene.	 Biochemical character	Os01g0191800	LOC_Os01g09580.2, LOC_Os01g09580.1				GO:0005819 - spindle, GO:0005730 - nucleolus, GO:0043987 - histone H3-S10 phosphorylation, GO:0035175 - histone kinase activity (H3-S10 specific), GO:0005524 - ATP binding		
12397	_		_	Histone H2A			5	one S-phase-expressed gene. Q75L11.		Os05g0113900	LOC_Os05g02300.1				GO:0000786 - nucleosome, GO:0006334 - nucleosome assembly, GO:0003677 - DNA binding, GO:0005634 - nucleus		
12398	EXPB17	OsEXPB17	BETA-EXPANSIN 17		BETA-EXPANSIN 17		4	Q7X6J9.	 Biochemical character	Os04g0530100	LOC_Os04g44780.2, LOC_Os04g44780.1				GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0019953 - sexual reproduction, GO:0005618 - cell wall		
12399	_	FSM, FAS1	_	FLATENNED SHOOT MERISTEM, FASCIATA1, CAF-1 p150 subunit, p150 subunit of chromatin assembly factor-1		fsm, fsm-1, fsm-2, fsm-3	1	B2ZX90. a putative ortholog of Arabidopsis FASCIATA1 (FAS1).	 Vegetative organ - Root	Os01g0896300	LOC_Os01g67100.1				GO:0010449 - root meristem growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0006310 - DNA recombination, GO:0006281 - DNA repair, GO:0005634 - nucleus, GO:0007090 - regulation of S phase of mitotic cell cycle, GO:0010448 - vegetative meristem growth, GO:0016568 - chromatin modification		
12400	_	GTE4, OsGTE4	_	GENERAL TRANSCRIPTION FACTOR GROUP E4		gte4	2			Os02g0250300	LOC_Os02g15220.4, LOC_Os02g15220.2, LOC_Os02g15220.1						
12401	_	MAP	_	MICROTUBULE-ASSOCIATED PROTEIN			8			Os08g0518100	LOC_Os08g40620.2, LOC_Os08g40620.1				GO:0005097 - Rab GTPase activator activity, GO:0005622 - intracellular, GO:0032851 - positive regulation of Rab GTPase activity		
12402	_	ZOS8-11	_				8	a C2H2 zinc finger protein.		Os08g0517300	LOC_Os08g40560.2, LOC_Os08g40560.1				GO:0005829 - cytosol, GO:0048509 - regulation of meristem development, GO:0048367 - shoot development, GO:0009507 - chloroplast, GO:0008270 - zinc ion binding, GO:0005730 - nucleolus, GO:0016607 - nuclear speck, GO:0031053 - primary microRNA processing, GO:0010267 - production of ta-siRNAs involved in RNA interference, GO:2000011 - regulation of adaxial/abaxial pattern formation		
12403	_	BTBN18	_	Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain 18, BTB domain with non-phototropic hypocotyl 3 domain 18			9			Os09g0266600	LOC_Os09g09370.3, LOC_Os09g09370.2, LOC_Os09g09370.1						
12404	_	OsTLP13, OsTLP4	_	Tubby-like protein 4, tubby-like protein 13			2	Q6ETL2. EU328285. OsTLP13 in Kou et al. 2009.	 Tolerance and resistance - Disease resistance	Os02g0179400	LOC_Os02g08310.1						
12405	_	OsSERL5, OsBAK1-4, SERK1	_	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase, SERK-like gene 5, bri1-associated receptor kinase 1 (BAK1) homologue 4			1	LOC_Os01g07630. a rice ortholog of Arabidopsis NIK3. KC610902-KC610914 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os01g0171000	LOC_Os01g07630.1				GO:0004672 - protein kinase activity		
12406	_	SAD2	_				4	an importin beta-domain protein.							GO:0006606 - protein import into nucleus		
12407	_	GIL1	_				10			Os10g0378400	LOC_Os10g23220.2, LOC_Os10g23220.1				GO:0005886 - plasma membrane		
12409	_	PHD1	_	photoassimilate defective1, photoassimilate defective 1		phd1, phd1-1, phd1-2, phd1-3	1	PHD1 encodes a functional chloroplast-localized UDP-glucose epimerase (UGE).	 Biochemical character	Os01g0367100	LOC_Os01g26920.2, LOC_Os01g26920.1						
12410	_	OsUGE1, OsUGE-1, UGE1, UGE-1	_	UDP-glucose epimerase 1, UDP-glucose 4-epimerase 1			5	Q8LNZ3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0595100	LOC_Os05g51670.3, LOC_Os05g51670.2, LOC_Os05g51670.1				GO:0006995 - cellular response to nitrogen starvation, GO:0005829 - cytosol, GO:0006012 - galactose metabolic process, GO:0006950 - response to stress, GO:0009969 - xyloglucan biosynthetic process, GO:0010053 - root epidermal cell differentiation, GO:0042546 - cell wall biogenesis, GO:0050662 - coenzyme binding, GO:0009414 - response to water deprivation, GO:0003978 - UDP-glucose 4-epimerase activity, GO:0005795 - Golgi stack	TO:0000276 - drought tolerance	
12411	_	OsUGE2	_	UDP-glucose epimerase 2			8	Q6ZDJ7.	 Biochemical character	Os08g0374800	LOC_Os08g28730.1				GO:0006012 - galactose metabolic process, GO:0006950 - response to stress, GO:0009969 - xyloglucan biosynthetic process, GO:0010053 - root epidermal cell differentiation, GO:0042546 - cell wall biogenesis, GO:0050662 - coenzyme binding, GO:0005829 - cytosol, GO:0005795 - Golgi stack, GO:0003978 - UDP-glucose 4-epimerase activity		
12412	_	OsUGE3	_	UDP-glucose epimerase 3			9	Q652A8.	 Biochemical character	Os09g0526700	LOC_Os09g35800.1				GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0046369 - galactose biosynthetic process, GO:0009555 - pollen development, GO:0005886 - plasma membrane, GO:0003978 - UDP-glucose 4-epimerase activity, GO:0005829 - cytosol, GO:0006950 - response to stress		
12413	_	OsUGE4	_	UDP-glucose epimerase 4			9	Q6K2E1.	 Biochemical character	Os09g0323000	LOC_Os09g15420.1				GO:0050662 - coenzyme binding, GO:0042546 - cell wall biogenesis, GO:0006012 - galactose metabolic process, GO:0010053 - root epidermal cell differentiation, GO:0009969 - xyloglucan biosynthetic process, GO:0005795 - Golgi stack, GO:0003978 - UDP-glucose 4-epimerase activity, GO:0005829 - cytosol, GO:0006950 - response to stress		
12414	Hb3	HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3	HEMOGLOBIN 3	non-symbiotic hemoglobin 3, Phytogb1.3, phytoglobin 1.3	HEMOGLOBIN 3		3	AF335504. Q94FT8.	 Biochemical character	Os03g0234000	LOC_Os03g13150.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0005829 - cytosol, GO:0019825 - oxygen binding, GO:0015671 - oxygen transport, GO:0005886 - plasma membrane, GO:0005618 - cell wall		
12415	Hb4	OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4	HEMOGLOBIN 4	non-symbiotic hemoglobin 4, Phytogb1.4, phytoglobin 1.4	HEMOGLOBIN 4		3	AF335504. Q94FT7.	 Biochemical character	Os03g0234100	LOC_Os03g13160.1				GO:0015671 - oxygen transport, GO:0009507 - chloroplast, GO:0019825 - oxygen binding, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0005618 - cell wall, GO:0005886 - plasma membrane		
12416	Hb5	OsHB5, HB5, OsPgb1.5, Pgb1.5	HEMOGLOBIN 5	non-symbiotic hemoglobin 5, Phytogb1.5, phytoglobin 1.5	HEMOGLOBIN 5		5	EF061459.	 Biochemical character	Os05g0517600	LOC_Os05g44140.1				GO:0005618 - cell wall, GO:0015671 - oxygen transport, GO:0005886 - plasma membrane, GO:0005506 - iron ion binding, GO:0005739 - mitochondrion, GO:0020037 - heme binding, GO:0019825 - oxygen binding		
12418	_	FLS, 2-ODD15, Os2-ODD15, 2ODD15, Os2ODD15	_	flavonol synthase, 2-oxoglutarate-dependent dioxygenase 15			2	GO:0080167response to karrikin.	 Biochemical character,  Coloration - Others	Os02g0767300	LOC_Os02g52840.1				GO:0051555 - flavonol biosynthetic process, GO:0009416 - response to light stimulus, GO:0045431 - flavonol synthase activity		
12419	CYP76M14	CYP76M14	P-450 76M14	Cytochrome P450 76M14	CYTOCHROME P450 76M14		1		 Biochemical character	Os01g0561600	LOC_Os01g38110.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
12420	CYP76M1	CYP76M1	P-450 76M1	Cytochrome P450 76M1	CYTOCHROME P450 76M1		8		 Biochemical character	Os08g0465700 	LOC_Os08g36310.1				GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
12421	CYP76C2	CYP76C2	P-450 76C2	Cytochrome P450 76C2	CYTOCHROME P450 76C2												
12422	CYP76M9	CYP76M9	P-450 76M9	Cytochrome P450 76M9	CYTOCHROME P450 76M9		6		 Biochemical character	Os06g0501900	LOC_Os06g30640.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
12423	CYP76M10	CYP76M10	P-450 76M10	Cytochrome P450 76M10	CYTOCHROME P450 76M10		8	AF488521.	 Biochemical character	Os08g0507100	LOC_Os08g39660.1				GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity		
12424	CYP76M13	CYP76M13	P-450 76M13	Cytochrome P450 76M13	CYTOCHROME P450 76M13		12		 Biochemical character	Os12g0199800	LOC_Os12g09790.1				GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
12425	CYP76M4P	CYP76M4p	P-450 76M4P	Cytochrome P450 76M4p, Cytochrome P450 76M4 pseudogene	CYTOCHROME P450 76M4P		8										
12426	CYP76M11P	CYP76M11p	P-450 76M11P	Cytochrome P450 76M11p, Cytochrome P450 76M11 pseudogene	CYTOCHROME P450 76M11P		8										
12427	CYP76L1	CYP76L1	P-450 76L1	Cytochrome P450 76L1	CYTOCHROME P450 76L1		9		 Biochemical character	Os09g0447300 	LOC_Os09g27500.1				GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
12428	CYP71W1	CYP71W1	P-450 71W1	Cytochrome P450 71W1	CYTOCHROME P450 71W1		3		 Biochemical character	Os03g0593600 	LOC_Os03g39650.1				GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity		
12429	CYP71B13	CYP71B13	P-450 71B13	Cytochrome P450 71B13	CYTOCHROME P450 71B13												
12430	CYP76M2	CYP76M2	P-450 76M2	Cytochrome P450 76M2	CYTOCHROME P450 76M2		8		 Biochemical character	Os08g0508000	LOC_Os08g39730.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
12431	_	rpL32_8.1	_	Ribosomal protein L32			8	60S ribosomal protein L32 (rpL32) gene on chromosome 8. D15957.	 Other	Os08g0524600	LOC_Os08g41300.1				GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0005730 - nucleolus		
12432	_	rpL32_9.1	_				9	60S ribosomal protein L32 (rpL32) gene on chromosome 9.	 Other	Os09g0501200	LOC_Os09g32500.2, LOC_Os09g32500.1				GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus		
12433	_	rpL32_9.2	_				9	60S ribosomal protein L32 (rpL32) gene on chromosome 9.	 Other	Os09g0501700	LOC_Os09g32520.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome		
12434	_	rpL32_9.3, RPL32, OsrpL32_9.3, OsRPL32	_	ribosomal protein L32			9	LOC_Os09g32532.1 60S ribosomal protein L32 (rpL32) gene on chromosome 9. RPL32 in Moin et al. 2016. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os09g0502000	LOC_Os09g32532.2, LOC_Os09g32532.1				GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0005730 - nucleolus, GO:0042742 - defense response to bacterium, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance	PO:0009046 - flower , PO:0025034 - leaf , PO:0009005 - root , PO:0009006 - shoot system 
12435	_	CabE	_	PSII type l Cab E			9	Light reaction group L1 chlorophyll a/b binding protein.		Os09g0296800	LOC_Os09g12540.1				GO:0009507 - chloroplast, GO:0009765 - photosynthesis, light harvesting, GO:0009637 - response to blue light, GO:0010218 - response to far red light, GO:0016020 - membrane, GO:0046872 - metal ion binding		
12436	_	PsbP	_	Oxygen-evolving complex protein PsbP			1	Light reaction group L1.		Os01g0805300	LOC_Os01g59090.1				GO:0009570 - chloroplast stroma, GO:0009543 - chloroplast thylakoid lumen, GO:0019898 - extrinsic to membrane, GO:0009654 - oxygen evolving complex, GO:0005509 - calcium ion binding, GO:0015979 - photosynthesis		
12437	_	PsbP	_	Oxygen-evolving complex protein PsbP			3	Light reaction group L1.		Os03g0279950	LOC_Os03g17174.2, LOC_Os03g17174.1				GO:0019898 - extrinsic to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0005509 - calcium ion binding, GO:0009543 - chloroplast thylakoid lumen, GO:0009654 - oxygen evolving complex, GO:0015979 - photosynthesis		
12438	_	PsbP	_	Oxygen-evolving complex protein PsbP			12	Light reaction group L1.		Os12g0564400	LOC_Os12g37710.2, LOC_Os12g37710.1				GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis, GO:0009543 - chloroplast thylakoid lumen, GO:0009654 - oxygen evolving complex, GO:0019898 - extrinsic to membrane, GO:0009570 - chloroplast stroma, GO:0005509 - calcium ion binding		
12439	_		_	PSII subunit H			4	Light reaction group L1. LOC_Os04g16848. Os04g0238700 (in Ncbi and UniProt). 			LOC_Os04g16848				GO:0050821 - protein stabilization, GO:0042301 - phosphate binding, GO:0015979 - photosynthesis, GO:0009535 - chloroplast thylakoid membrane, GO:0009523 - photosystem II		
12440	_		_	NAD(P)H-quinone oxidoreductase chain 2			7	Light reaction group L2.		Os07g0467900	LOC_Os07g28470.2, LOC_Os07g28470.1				GO:0042773 - ATP synthesis coupled electron transport, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
12441	_		_	NAD(P)H-quinone oxidoreductase chain 3			4	Light reaction group L2.		Os04g0309100	LOC_Os04g24410.2, LOC_Os04g24410.1				GO:0009507 - chloroplast, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0022900 - electron transport chain, GO:0070469 - respiratory chain, GO:0031966 - mitochondrial membrane		
12442	_		_	Cytochrome b6f subunit 7			3	Light reaction group L3.		Os03g0765900	LOC_Os03g55720.2, LOC_Os03g55720.1				GO:0009512 - cytochrome b6f complex, GO:0009535 - chloroplast thylakoid membrane		
12443	_		_	Ferredoxin			7	Light reaction group L5.		Os07g0489800	LOC_Os07g30670.3, LOC_Os07g30670.2, LOC_Os07g30670.1				GO:0051536 - iron-sulfur cluster binding, GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone), GO:0009773 - photosynthetic electron transport in photosystem I, GO:0009535 - chloroplast thylakoid membrane, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding		
12444	_		_	Ferredoxin I			4	Light reaction group L5.		Os04g0412200	LOC_Os04g33630.1				GO:0009055 - electron carrier activity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0022900 - electron transport chain, GO:0046872 - metal ion binding		
12445	_		_	Ferredoxin I			5	Light reaction group L5.		Os05g0555300	LOC_Os05g48160.3, LOC_Os05g48160.2, LOC_Os05g48160.1				GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0051536 - iron-sulfur cluster binding		
12447	_	FNR, PetH	_	Ferredoxin-NADP+ reductase			3	Light reaction group L5. P41345. D38445. D17410. PetH in Song et al. 2014. LOC_Os03g57120.	 Biochemical character	Os03g0784700	LOC_Os03g57120.2, LOC_Os03g57120.1				GO:0015979 - photosynthesis, GO:0022900 - electron transport chain, GO:0050661 - NADP or NADPH binding, GO:0050660 - FAD binding, GO:0042651 - thylakoid membrane, GO:0009507 - chloroplast, GO:0005507 - copper ion binding, GO:0004324 - ferredoxin-NADP+ reductase activity		
12448	_	psaN	_	PSI subunit N, Photosystem I reaction center subunit n, PSI reaction center subunit n			12	Light reaction group L6. 		Os12g0189400	LOC_Os12g08770.1				GO:0042651 - thylakoid membrane, GO:0009522 - photosystem I, GO:0015979 - photosynthesis		
12449	_		_	ATP synthase g-chain			7	Light reaction group L7. 		Os07g0513000	LOC_Os07g32880.1				GO:0009772 - photosynthetic electron transport in photosystem II, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0015986 - ATP synthesis coupled proton transport, GO:0009535 - chloroplast thylakoid membrane, GO:0009941 - chloroplast envelope		
12450	_		_	Rubisco activase			4	Dark reaction group D1. 		Os04g0658300	LOC_Os04g56320.1				GO:0009535 - chloroplast thylakoid membrane, GO:0005524 - ATP binding		
12451	_		_	Rubisco subunit-binding protein			3	Dark reaction group D1. 		Os03g0293900	LOC_Os03g18270.1				GO:0005524 - ATP binding, GO:0044267 - cellular protein metabolic process		
12452	TCD9	OsCPn60alpha3, OsCPn60a3	_	Rubisco subunit-binding protein, chaperonin 60 alpha subunit 3, thermo-sensitive chloroplast development 9		tcd9	9	Dark reaction group D1. LOC_Os09g38980. a single recessive nuclear gene.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os09g0563300	LOC_Os09g38980.2, LOC_Os09g38980.1				GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0044267 - cellular protein metabolic process, GO:0009658 - chloroplast organization, GO:0005737 - cytoplasm	TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000432 - temperature response trait, TO:0000326 - leaf color	
12453	_	OsEno5, Eno5	_	Glyceraldehyde 3-phosphate dehydrogenase, enolase 5			6	Dark reaction group D2. 		Os06g0136600	LOC_Os06g04510.2, LOC_Os06g04510.1				GO:0000015 - phosphopyruvate hydratase complex, GO:0004634 - phosphopyruvate hydratase activity, GO:0000287 - magnesium ion binding, GO:0006096 - glycolysis		PO:0025034 - leaf , PO:0020104 - leaf sheath 
12454	_		_	Pyruvate kinase isozyme G			10	Dark reaction group D2. 		Os10g0571200 	LOC_Os10g42100.1				GO:0004743 - pyruvate kinase activity, GO:0006096 - glycolysis, GO:0000287 - magnesium ion binding, GO:0030955 - potassium ion binding		
12455	_		_	Triose phosphate isomerase			9	Dark reaction group D3. 		Os09g0535000 	LOC_Os09g36450.2, LOC_Os09g36450.1				GO:0006642 - triglyceride mobilization, GO:0048046 - apoplast, GO:0009941 - chloroplast envelope, GO:0006096 - glycolysis, GO:0004807 - triose-phosphate isomerase activity, GO:0046166 - glyceraldehyde-3-phosphate biosynthetic process, GO:0019563 - glycerol catabolic process, GO:0032504 - multicellular organism reproduction, GO:0009579 - thylakoid, GO:0009658 - chloroplast organization, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0080022 - primary root development		
12456	YGDL1	OsAld-Y, Ald-Y, YGDL-1	YELLOW GREEN AND DROOPY LEAF-1	Fru-1, 6-bisphosphatase, fructose-1, 6-bisphosphate aldolase Y, yellow green and droopy leaf-1, YELLOW GREEN AND DROOPY LEAF 1	FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE  Y	ygdl-1	6	Dark reaction group D3. LOC_Os06g40640. GO:0090391: geranium assembly. 	 Biochemical character,  Coloration - Chlorophyll	Os06g0608700 	LOC_Os06g40640.4, LOC_Os06g40640.3, LOC_Os06g40640.2, LOC_Os06g40640.1				GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0006096 - glycolysis, GO:0004332 - fructose-bisphosphate aldolase activity, GO:0001666 - response to hypoxia, GO:0005777 - peroxisome, GO:0009225 - nucleotide-sugar metabolic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000298 - chlorophyll ratio, TO:0001015 - photosynthetic rate, TO:0000289 - carotene content, TO:0002715 - chloroplast development trait	
12457	_		_	Fru-1, 6-bisphosphatase			6	Dark reaction group D3. 		Os06g0664200 	LOC_Os06g45370.1				GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0005975 - carbohydrate metabolic process, GO:0009507 - chloroplast		
12458	_		_	Phospho 2-dehydro 3-deoxyheptonate aldolase 2			10	Dark reaction group D3. 		Os10g0564400 	LOC_Os10g41480.1				GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity, GO:0009423 - chorismate biosynthetic process, GO:0009073 - aromatic amino acid family biosynthetic process		
12459	_		_	Fru-6-P 2-kinase/Fru-bisphosphatase			3	Dark reaction group D3. GO:2001070:starch binding.		Os03g0294200 	LOC_Os03g18310.3, LOC_Os03g18310.2, LOC_Os03g18310.1				GO:0006000 - fructose metabolic process, GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity, GO:0005524 - ATP binding, GO:0003873 - 6-phosphofructo-2-kinase activity, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0006003 - fructose 2,6-bisphosphate metabolic process		
12460	_	OsTK, TK	_	Transketolase			6	Dark reaction group D3.	 Biochemical character	Os06g0133800  	LOC_Os06g04270.1				GO:0004802 - transketolase activity, GO:0009570 - chloroplast stroma, GO:0009651 - response to salt stress, GO:0009941 - chloroplast envelope, GO:0046686 - response to cadmium ion		
12461	_		_	Rib-5-P isomerase			3	Dark reaction group D3.		Os03g0781400  	LOC_Os03g56869.1				GO:0004751 - ribose-5-phosphate isomerase activity, GO:0009052 - pentose-phosphate shunt, non-oxidative branch, GO:0009507 - chloroplast		
12462	YGL6 	CSP41b, LGL1	YELLOW-GREEN LEAF 6	NAD-dependent epimerase/dehydratase, chloroplast stem-loop-binding protein of 41 kDa b, light-green leaves 1, yellow-green leaf 6	CHLOROPLAST STEM-LOOP-BINDING PROTEIN OF 41 KDA B	lgl1, ygl6	12	LOC_Os12g23180. Dark reaction group D3. GO:1903866: palisade mesophyll development.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others	Os12g0420200 	LOC_Os12g23180.1				GO:0009507 - chloroplast, GO:0010319 - stromule, GO:0006364 - rRNA processing, GO:0007623 - circadian rhythm, GO:0048046 - apoplast, GO:0005840 - ribosome, GO:0005777 - peroxisome, GO:0005773 - vacuole, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0009409 - response to cold, GO:0009658 - chloroplast organization, GO:0010287 - plastoglobule, GO:0010027 - thylakoid membrane organization, GO:0009941 - chloroplast envelope	TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0002715 - chloroplast development trait, TO:0002655 - starch grain size, TO:0000298 - chlorophyll ratio, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content	
12463	_		_	pyruvate/phosphoenolpyruvate kinase			9	Dark reaction group D3. HpcH/HpaI aldolase family protein.	 Biochemical character	Os09g0529900 	LOC_Os09g36030.1				GO:0002237 - response to molecule of bacterial origin, GO:0005739 - mitochondrion, GO:0016830 - carbon-carbon lyase activity, GO:0006725 - cellular aromatic compound metabolic process, GO:0005975 - carbohydrate metabolic process, GO:0009507 - chloroplast, GO:0016832 - aldehyde-lyase activity, GO:0005737 - cytoplasm		
12464	_		_	Triose phosphate/phosphate translocator			8	Dark reaction group D4. Q84QU8.		Os08g0344600 	LOC_Os08g25624.4, LOC_Os08g25624.3, LOC_Os08g25624.2, LOC_Os08g25624.1				GO:0008643 - carbohydrate transport, GO:0005739 - mitochondrion, GO:0009670 - triose-phosphate transmembrane transporter activity, GO:0015714 - phosphoenolpyruvate transport, GO:0031969 - chloroplast membrane, GO:0015121 - phosphoenolpyruvate transmembrane transporter activity, GO:0016021 - integral to membrane		
12465	_	OspPGM, pPGM	_	Phosphoglucomutase, Plastidic phosphoglucomutase		osppgm-1, osppgm-2	10	Dark reaction group D4. LOC_Os10g11140.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Physiological traits - Storage substances	Os10g0189100 	LOC_Os10g11140.2, LOC_Os10g11140.1				GO:0004614 - phosphoglucomutase activity, GO:0048046 - apoplast, GO:0009941 - chloroplast envelope, GO:0000287 - magnesium ion binding, GO:0005829 - cytosol, GO:0005992 - trehalose biosynthetic process, GO:0009409 - response to cold, GO:0009570 - chloroplast stroma, GO:0009590 - detection of gravity, GO:0010319 - stromule, GO:0019252 - starch biosynthetic process, GO:0019388 - galactose catabolic process	TO:0000106 - male sterility type, TO:0000696 - starch content	
12466	_	OsFKII, OsFK1, FKII, FK1	_	Fructokinase, fructokinase II, Fructokinase 1, Fructokinase-2			8	Dark reaction group D4. Q0J8G4. AF429947. A2YQL4. OsFK1 in Guglielminetti et al. 2006 and Guglielminetti et al. 2014.	 Biochemical character,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os08g0113100 	LOC_Os08g02120.1				GO:0005524 - ATP binding, GO:0019252 - starch biosynthetic process, GO:0005829 - cytosol, GO:0046688 - response to copper ion, GO:0006000 - fructose metabolic process, GO:0008865 - fructokinase activity	TO:0000021 - copper sensitivity	
12467	_	OsCIN4, CIN4, OsCIN5, CIN5	_	b-Fructofuranosidase, cell-wall invertase 4, cell-wall invertase 5	_		1	Dark reaction group D4. AY578161. Q5JJV0. GO:0071836: nectar secretion. GO:0080167: response to karrikin. AY575552. OsCIN5 in Ji et al. 2005.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0966700 	LOC_Os01g73580.1				GO:0004575 - sucrose alpha-glucosidase activity, GO:0009611 - response to wounding, GO:0051670 - inulinase activity, GO:0005618 - cell wall, GO:0005773 - vacuole, GO:0005982 - starch metabolic process, GO:0048046 - apoplast, GO:0031219 - levanase activity	TO:0000074 - blast disease	
12468	_		_	Gln synthetase			6	Dark reaction group D5.		Os06g0699700 	LOC_Os06g48620.1				GO:0009396 - folic acid and derivative biosynthetic process		
12469	ATASE3	Atase3, OsATASE3	AMIDO PHOSPHORIBOSYLTRANSFERASE 3	Gln synthetase, amido phosphoribosyltransferase 3	AMIDO PHOSPHORIBOSYLTRANSFERASE 3		5	Dark reaction group D5.	 Biochemical character	Os05g0430800 	LOC_Os05g35580.1				GO:0046872 - metal ion binding, GO:0006189 - 'de novo' IMP biosynthetic process, GO:0009965 - leaf morphogenesis, GO:0009116 - nucleoside metabolic process, GO:0009113 - purine base biosynthetic process, GO:0005618 - cell wall, GO:0009507 - chloroplast, GO:0009532 - plastid stroma, GO:0004044 - amidophosphoribosyltransferase activity, GO:0051536 - iron-sulfur cluster binding		
12470	_		_	Ferredoxin-dependent Glu synthase			7	Dark reaction group D5.		Os07g0676200 							
12471	PSAA	PsaA	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaA, photosystem I subunit PsaA			1	LOC_Os01g57964. Os01g0790950 (in Ncbi and UniProt). 			LOC_Os01g57964				GO:0009658 - chloroplast organization, GO:0009522 - photosystem I, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane	TO:0002715 - chloroplast development trait	
12472	GLO1	GLO1, OsGLO1	GLYCOLATE OXIDASE 1	Glycolate oxidase 1			3	Q10CE4. CB683246. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity.	 Biochemical character	Os03g0786100	LOC_Os03g57220.2, LOC_Os03g57220.1				GO:0009854 - oxidative photosynthetic carbon pathway, GO:0048046 - apoplast, GO:0019048 - virus-host interaction, GO:0005634 - nucleus, GO:0010109 - regulation of photosynthesis, GO:0016020 - membrane, GO:0005773 - vacuole, GO:0005777 - peroxisome, GO:0008891 - glycolate oxidase activity, GO:0010181 - FMN binding, GO:0022626 - cytosolic ribosome, GO:0009570 - chloroplast stroma, GO:0009853 - photorespiration		
12473	GLO2	GLO2, OsGLO2	GLYCOLATE OXIDASE 2	Glycolate oxidase 2			4	Q7XPR4. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity. 	 Biochemical character	Os04g0623600	LOC_Os04g53214.2, LOC_Os04g53214.1				GO:0019048 - virus-host interaction, GO:0008891 - glycolate oxidase activity, GO:0005777 - peroxisome, GO:0005773 - vacuole, GO:0005634 - nucleus, GO:0048046 - apoplast, GO:0009570 - chloroplast stroma, GO:0009853 - photorespiration, GO:0009854 - oxidative photosynthetic carbon pathway, GO:0010109 - regulation of photosynthesis, GO:0010181 - FMN binding, GO:0016020 - membrane, GO:0022626 - cytosolic ribosome		
12474	GLO3	GLO3, OsGLO3	GLYCOLATE OXIDASE 3	Glycolate oxidase 3			4	Q7FAS1. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity.	 Biochemical character	Os04g0623500	LOC_Os04g53210.3, LOC_Os04g53210.1				GO:0048046 - apoplast, GO:0005634 - nucleus, GO:0005773 - vacuole, GO:0005777 - peroxisome, GO:0008891 - glycolate oxidase activity, GO:0009570 - chloroplast stroma, GO:0009853 - photorespiration, GO:0009854 - oxidative photosynthetic carbon pathway, GO:0010109 - regulation of photosynthesis, GO:0010181 - FMN binding, GO:0016020 - membrane, GO:0019048 - virus-host interaction, GO:0022626 - cytosolic ribosome		
12475	GLO5	GLO4, OsGLO4, OsGLO5	GLYCOLATE OXIDASE 5	Glycolate oxidase 4, Glycolate oxidase 5	GLYCOLATE OXIDASE 5		7	Q6YT73. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity. GLO4 in Zhang et al. 2012 and 2016, Lu et al. 2014.	 Biochemical character	Os07g0152900	LOC_Os07g05820.2, LOC_Os07g05820.1				GO:0022626 - cytosolic ribosome, GO:0016020 - membrane, GO:0009570 - chloroplast stroma, GO:0009853 - photorespiration, GO:0010109 - regulation of photosynthesis, GO:0010181 - FMN binding, GO:0010118 - stomatal movement, GO:0048046 - apoplast, GO:0019048 - virus-host interaction, GO:0009854 - oxidative photosynthetic carbon pathway, GO:0005634 - nucleus, GO:0046487 - glyoxylate metabolic process, GO:0005773 - vacuole, GO:0005777 - peroxisome, GO:0008891 - glycolate oxidase activity	TO:0001015 - photosynthetic rate, TO:0000522 - stomatal conductance	
12476	GLO4	GLO5, OsGLO5, OsGLO4	GLYCOLATE OXIDASE 4	Glycolate oxidase 5, Glycolate oxidase 4	GLYCOLATE OXIDASE 4		7	Q8H3I4. CB967248. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity. GLO5 in Zhang et al. 2012.	 Biochemical character	Os07g0616500	LOC_Os07g42440.4, LOC_Os07g42440.3, LOC_Os07g42440.2, LOC_Os07g42440.1				GO:0019048 - virus-host interaction, GO:0005777 - peroxisome, GO:0008891 - glycolate oxidase activity, GO:0009853 - photorespiration, GO:0009854 - oxidative photosynthetic carbon pathway, GO:0010109 - regulation of photosynthesis, GO:0010181 - FMN binding		
12477	GLO6	GLO6, OsGLO6	GLYCOLATE OXIDASE 6	Glycolate oxidase 6			8		 Biochemical character	Os08g0198700	LOC_Os08g09860.1				GO:0055114 - oxidation reduction, GO:0016491 - oxidoreductase activity		
12478	_	OsPPi-PFK, OsPFK04, PFK04, PFK4	_	Pyrophosphate-dependent phosphofructo-1-kinase, phosphofructokinase 4			5	group A phosphofructokinase (PKF_A). LOC_Os05g10650.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0194900	LOC_Os05g10650.1				GO:0005886 - plasma membrane, GO:0006002 - fructose 6-phosphate metabolic process, GO:0003872 - 6-phosphofructokinase activity, GO:0034059 - response to anoxia, GO:0005829 - cytosol, GO:0005945 - 6-phosphofructokinase complex, GO:0005737 - cytoplasm, GO:0006096 - glycolysis	TO:0000482 - chemical stress sensitivity	
12479	_	OsLASPO	_	L-aspartate oxidase			2		 Biochemical character	Os02g0134400	LOC_Os02g04170.3, LOC_Os02g04170.2, LOC_Os02g04170.1				GO:0009507 - chloroplast, GO:0009435 - NAD biosynthetic process, GO:0008734 - L-aspartate oxidase activity		
12480	_	OsMYB-1, MYB-1, MYB1, OsARM1, ARM1	_	Myb-like DNA-binding domain containing protein 1, ARSENITE-RESPONSIVE MYB1		osarm1	5	LOC_Os05g37060.	 Tolerance and resistance - Stress tolerance	Os05g0442400	LOC_Os05g37060.1				GO:0003682 - chromatin binding, GO:0046685 - response to arsenic, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
12481	_	OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62	_	NPK1-related protein kinase		mkkk62-1, mkkk62-2, mkkk62-3	1	BF889458, BF889460, BF889470. GO1902039: negative regulation of seed dormancy process.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os01g0699600	LOC_Os01g50420.1				GO:0009737 - response to abscisic acid stimulus, GO:2000033 - regulation of seed dormancy, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009753 - response to jasmonic acid stimulus	TO:0000253 - seed dormancy, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
12482	_	OsGH	_	glycosyl hydrolase			8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0518800	LOC_Os08g40680.1				GO:0005975 - carbohydrate metabolic process, GO:0003824 - catalytic activity		
12483	_	OsAT-IV	_	aminotransferase, class IV family protein			5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0244700	LOC_Os05g15530.1				GO:0003824 - catalytic activity		
12484	_	OsPRAGL	_	phosphoribosylamine-glycine ligase			12	LOC_Os12g09540.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0197100	LOC_Os12g09540.2, LOC_Os12g09540.1				GO:0006164 - purine nucleotide biosynthetic process, GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0004637 - phosphoribosylamine-glycine ligase activity, GO:0046872 - metal ion binding, GO:0009113 - purine base biosynthetic process		
12485	_	OsRNAG	_	Receptor mediating netrin-dependent axon guidance homolog			1		 Tolerance and resistance - Stress tolerance	Os01g0386500	LOC_Os01g28970.2						
12486	_	OsLRR	_	NBS-LRR disease resistance protein			11	LOC_Os11g12000.	 Tolerance and resistance - Stress tolerance	Os11g0227200 	LOC_Os11g12000.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
12487	_	OsCYP450	_	Cytochrome P450 family protein			12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0150200	LOC_Os12g05440.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0018685 - alkane 1-monooxygenase activity, GO:0009055 - electron carrier activity		
12488	POX22.3	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9	PEROXIDASE 22.3	Peroxidase22.3, Peroxidase 22.3, Peroxidase-22.3, Pathogen-induced Peroxidase, class III peroxidase 111, Peroxidase 2, Pathogenesis related gene 9	PEROXIDASE 22.3		7	LOC_Os07g48020. AF014467. X66125. BN000640. cell wall-bound peroxidase (CW-PRX). Peroxidase 2 in Sudo et al. 2008.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0677200	LOC_Os07g48020.1				GO:0000172 - ribonuclease MRP complex, GO:0009414 - response to water deprivation, GO:0046688 - response to copper ion, GO:0004601 - peroxidase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0010332 - response to gamma radiation, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000021 - copper sensitivity	
12489	POX8.1	POX8.1, prx110, POX8	PEROXIDASE 8.1	Peroxidase8.1, Peroxidase 8.1, Peroxidase-8.1, class III peroxidase 110	PEROXIDASE 8.1		7	LOC_Os07g48010. AF014468. BN000639. cell wall-bound peroxidase (CW-PRX).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0677100	LOC_Os07g48010.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity		
12490	POX5.1	POX5.1, prx113, POX5	PEROXIDASE 5.1	Peroxidase5.1, Peroxidase 5.1, Peroxidase-5.1, class III peroxidase 113	PEROXIDASE 5.1		7	AF014469. BN000642. cell wall-bound peroxidase (CW-PRX).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0677400	LOC_Os07g48040.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
12491	POXGX9	POXgX9, OsPOXgX9, prx112	PEROXIDASE GX9	PeroxidasegX9, Peroxidase gX9, Peroxidase-gX9, class III peroxidase 112	PEROXIDASE GX9		7	AF014470. A2YPX3, Q0D3N0. BN000641. cell wall-bound peroxidase (CW-PRX). D16442.	 Biochemical character	Os07g0677300	LOC_Os07g48030.1				GO:0004601 - peroxidase activity, GO:0042744 - hydrogen peroxide catabolic process, GO:0046872 - metal ion binding, GO:0005576 - extracellular region, GO:0020037 - heme binding		
12492	POX3006	POX3006, prx114, PO-C1, POC-1, POC1	PEROXIDASE 3006	Peroxidase3006, Peroxidase 3006, Peroxidase-3006, class III peroxidase 114	PEROXIDASE 3006		7	LOC_Os07g48050. AF014471. BN000643. cell wall-bound peroxidase (CW-PRX). AF247700 (peroxidase POC1). LOC4344281(Os07g0677400/Os07g0677500).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0677500	LOC_Os07g48050.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0006952 - defense response, GO:0046872 - metal ion binding	TO:0000112 - disease resistance	
12493	_	OsOPT8	_	Oligopeptide transporter 8			2			Os02g0695800	LOC_Os02g46850.1						
12494	_	OsOPT6	_	Oligopeptide transporter 6			4			Os04g0594800	LOC_Os04g50820.1				GO:0055085 - transmembrane transport		
12495	_	OsOPT2	_	Oligopeptide transporter 2			6			Os06g0125400	LOC_Os06g03540.1				GO:0006857 - oligopeptide transport, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane		
12496	_	OsOPT3, OsGT1	_	Oligopeptide transporter 3, glutathione transporter 1		osopt3, osgt1	6	AF393848, D25093, AU082160.	 Tolerance and resistance - Stress tolerance	Os06g0125500 	LOC_Os06g03560.1				GO:0006857 - oligopeptide transport, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane		
12497	_	OsOPT4	_	Oligopeptide transporter 4			6			Os06g0127700	LOC_Os06g03700.1				GO:0005886 - plasma membrane, GO:0055085 - transmembrane transport, GO:0006857 - oligopeptide transport		
12498	_	OsOPT5	_	Oligopeptide transporter 5			8			Os08g0320200	LOC_Os08g23130.3, LOC_Os08g23130.2				GO:0055085 - transmembrane transport, GO:0006857 - oligopeptide transport		
12499	_	OsOPT9	_	Oligopeptide transporter 9		osopt9	8		 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0492000	LOC_Os08g38400.1				GO:0055085 - transmembrane transport, GO:0006857 - oligopeptide transport		
12500	ADF1	OsADF1	ACTIN DEPOLYMERIZING FACTOR 1	actin depolymerizing factor 1	ACTIN DEPOLYMERIZING FACTOR 1		2	Q6EUH7.	 Tolerance and resistance - Stress tolerance	Os02g0663800	LOC_Os02g44470.1				GO:0030042 - actin filament depolymerization, GO:0015629 - actin cytoskeleton		
12501	ADF2	OsADF	ACTIN DEPOLYMERIZING FACTOR 2	actin depolymerizing factor 2	ACTIN DEPOLYMERIZING FACTOR 2	OsADF2/6alpha	3	Q9AY76. AC084320. GO:0090332: stomatal closure.	 Tolerance and resistance - Stress tolerance	Os03g0780400	LOC_Os03g56790.1				GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0003779 - actin binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
12502	ADF3	OsADF3	ACTIN DEPOLYMERIZING FACTOR 3	actin depolymerizing factor 3	ACTIN DEPOLYMERIZING FACTOR 3		3	Q84TB6. AC104433.	 Tolerance and resistance - Stress tolerance	Os03g0820500	LOC_Os03g60580.1				GO:0009409 - response to cold, GO:0006950 - response to stress, GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization	TO:0000303 - cold tolerance	
12503	ADF4	OsADF4, OsADF	ACTIN DEPOLYMERIZING FACTOR 4	actin depolymerizing factor 4	ACTIN DEPOLYMERIZING FACTOR 4	adf	3	Q84TB3. LOC_Os03g60590.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os03g0820600					GO:0030042 - actin filament depolymerization, GO:0015629 - actin cytoskeleton		
12504	ADF5	OsADF5	ACTIN DEPOLYMERIZING FACTOR 5	actin depolymerizing factor 5	ACTIN DEPOLYMERIZING FACTOR 5		3	Q10P87.	 Tolerance and resistance - Stress tolerance	Os03g0243100	LOC_Os03g13950.1, LOC_Os03g13950.4, LOC_Os03g13950.3, LOC_Os03g13950.2				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12505	ADF6	OsADF6	ACTIN DEPOLYMERIZING FACTOR 6	actin depolymerizing factor 6	ACTIN DEPOLYMERIZING FACTOR 6		4	Q7XSN9.	 Tolerance and resistance - Stress tolerance	Os04g0555700	LOC_Os04g46910.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12506	ADF7	OsADF7	ACTIN DEPOLYMERIZING FACTOR 7	actin depolymerizing factor 7	ACTIN DEPOLYMERIZING FACTOR 7		5	Q0DLA3.		Os05g0113400	LOC_Os05g02250.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12507	ADF8	OsADF8, OsADF8a, OsADF8b	ACTIN DEPOLYMERIZING FACTOR 8	actin depolymerizing factor 8	ACTIN DEPOLYMERIZING FACTOR 8		7	AP004760, AP006344. Q0D744.		Os07g0297500	LOC_Os07g20170.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12508	ADF9	OsADF9	ACTIN DEPOLYMERIZING FACTOR 9	actin depolymerizing factor 9	ACTIN DEPOLYMERIZING FACTOR 9		7	Q8H2P8.	 Tolerance and resistance - Stress tolerance	Os07g0484200	LOC_Os07g30090.2				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12509	ADF10	OsADF10	ACTIN DEPOLYMERIZING FACTOR 10	actin depolymerizing factor 10	ACTIN DEPOLYMERIZING FACTOR 10		10	Q337A5.	 Tolerance and resistance - Stress tolerance	Os10g0521100	LOC_Os10g37670.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12510	ADF11	OsADF11	ACTIN DEPOLYMERIZING FACTOR 11	actin depolymerizing factor 11	ACTIN DEPOLYMERIZING FACTOR 11		12	Q2QLT8.	 Tolerance and resistance - Stress tolerance	Os12g0628100	LOC_Os12g43340.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12511	_	KOB1	_	K+ channel beta 1 subunit, K+ Channel beta Subunit			2	U46758. Q40648.	 Biochemical character	Os02g0817500	LOC_Os02g57240.1				GO:0005244 - voltage-gated ion channel activity, GO:0006813 - potassium ion transport, GO:0005886 - plasma membrane		
12512	_	OsGEX2, GEX2	_	Gamete Expressed 2			9	LOC_Os09g25650. The OsGEX2 gene is homologous to Arabidopsis GEX2. The rice OsGEX2 and PS1 gene promoter sequences contain all the elements needed for controlling transgene expression in the sperm and vegetative cells of rice pollen. JN593328 (promoter sequence).		Os09g0424800/Os09g0424701							
12513	_	PS1	_	Pollen Specific 1			4	PS1 shares homology with maize pollen-specific gene Zm-13. JN593329 (promoter sequence). The rice OsGEX2 and PS1 gene promoter sequences contain all the elements needed for controlling transgene expression in the sperm and vegetative cells of rice pollen.		Os04g0398700	LOC_Os04g32680.1				GO:0005615 - extracellular space		
12514	_	Bph20(t), BPH20	_	BROWN PLANTHOPPER RESISTANCE 20			6	The locus bph20(t) was fine mapped to the short arm of chromosome 6 about 2.7 cM to the upper marker RM435 and 2.5 cM to lower marker RM540 and in a 2.5 cM region flanked by two new SSR markers BYL7 and BYL8.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
12515	_	Bph21(t), BPH21	_	BROWN PLANTHOPPER RESISTANCE 21			10	The BPH resistance locus bph21(t) was initially mapped to a region 7.9 cM to upper marker RM222 and 4.0 cM to lower marker RM244 on the short arm of chromosome 10.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
12516	_	OsCHB701, CHB701	_	SWIRM domain-containing protein CHB701			12		 Tolerance and resistance - Stress tolerance	Os12g0176700	LOC_Os12g07730.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
12517	_	OsCHB702, CHB702	_	SWIRM domain-containing protein CHB702			2			Os02g0194000	LOC_Os02g10060.1				GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
12518	_	OsCHB703, CHB703	_	SWIRM domain-containing protein CHB703			4			Os04g0480300	LOC_Os04g40420.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003682 - chromatin binding		
12519	_	OsCHB704, CHB704	_	SWIRM domain-containing protein CHB704			4			Os04g0110300	LOC_Os04g01970.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0005634 - nucleus		
12520	_	OsCHB706, CHB706	_	SWIRM domain-containing protein CHB706			3			Os03g0722100	LOC_Os03g51220.1				GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0003677 - DNA binding		
12521	_	OsHDMA701, HDMA701, OsPAO9, PAO9	_	SWIRM domain-containing protein HDMA701, histone lysine-specific demethylase 701, polyamine oxidase 9			4	Q7XUR2. LOC_Os04g47270.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0560300	LOC_Os04g47270.1				GO:0003677 - DNA binding, GO:0010228 - vegetative to reproductive phase transition, GO:0009536 - plastid, GO:0016491 - oxidoreductase activity, GO:0016575 - histone deacetylation, GO:0051568 - histone H3-K4 methylation, GO:0009911 - positive regulation of flower development		
12522	_	OsHDMA702, HDMA702, OsPAO8, PAO8	_	SWIRM domain-containing protein HDMA702, histone lysine-specific demethylase 702, polyamine oxidase 8			2	Q6Z690. LOC_Os02g51880.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0755200	LOC_Os02g51880.1				GO:0016568 - chromatin modification, GO:0016491 - oxidoreductase activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
12523	_	OsHDMA703, HDMA703, OsPAO10, PAO10	_	SWIRM domain-containing protein HDMA703, histone lysine-specific demethylase 703, polyamide oxidase 10			8	Q6YYZ1. LOC_Os08g04780.	 Biochemical character	Os08g0143400	LOC_Os08g04780.1				GO:0016568 - chromatin modification, GO:0005739 - mitochondrion, GO:0003677 - DNA binding, GO:0016491 - oxidoreductase activity		
12524	_	OsHDMA704, HDMA704, OsPAO11, PAO11	_	SWIRM domain-containing protein HDMA704, histone lysine-specific demethylase 704, polyamine oxidase 11			10	LOC_Os10g38850.	 Biochemical character	Os10g0532100/Os10g0532150					GO:0016491 - oxidoreductase activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
12525	_	OsHXA701, HXA701, ADA2	_	SWIRM domain-containing protein HXA701			3	LOC_Os03g53960. Q75LL6. rice homolog of Arabidopsis ADA2 (AtADA2a and AtADA2b).	 Vegetative organ - Root	Os03g0750800	LOC_Os03g53960.2, LOC_Os03g53960.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0051302 - regulation of cell division, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048364 - root development, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0010015 - root morphogenesis, GO:0003682 - chromatin binding	TO:0000656 - root development trait, TO:0000207 - plant height	PO:0006085 - root meristem 
12526	_		_	mitochondrial-processing peptidase subunit alpha			1	One of the candidate genes in the Rf3 locus.	 Biochemical character	Os01g0191500	LOC_Os01g09560.1				GO:0005750 - mitochondrial respiratory chain complex III, GO:0003824 - catalytic activity, GO:0005524 - ATP binding, GO:0005741 - mitochondrial outer membrane, GO:0005758 - mitochondrial intermembrane space, GO:0009507 - chloroplast, GO:0046872 - metal ion binding, GO:0009651 - response to salt stress, GO:0005759 - mitochondrial matrix, GO:0008152 - metabolic process, GO:0005886 - plasma membrane		
12527	_	SF21	_	pollen-specific protein SF21			1	One of the candidate genes in the Rf3 locus.		Os01g0192600	LOC_Os01g09670.1						
12529	_	PPR762	_	pentatricopeptide repeat protein 762			10	AB110443. One of the candidate genes in the Rf4 locus.									
12530	S35	S35(t)	HYBRID STERILITY 35	Hybrid sterility35, Hybrid sterility 35, Hybrid sterility-35		S35(t)-gj, S35(t)-gi	12	The locus qSS-12 controlling hybrid sterility was located in a 5.8 cM interval between markers RM19 and RM6296, and  it was designated as S35(t).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	
12531	_	OsPCBP	_	pollen-specific calmodulin-binding protein			11	AY323950.		Os11g0689300	LOC_Os11g46230.2, LOC_Os11g46230.1						
12532	_	OsIAGLU	_	IAA-glucose synthase			3	AC120508. Overexpression of the OsIAGLU gene in riceresults in increased tiller numbers and shorter plant height.	 Biochemical character,  Vegetative organ - Culm	Os03g0693600 	LOC_Os03g48740.1				GO:0016758 - transferase activity, transferring hexosyl groups		
12533	RBBI3-1	RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4	BOWMAN-BIRK INHIBITOR 3-1	Bowman-Birk type bran trypsin inhibitor 4	BOWMAN-BIRK INHIBITOR 3-1		1	AJ277468. OsBBTI4 in Lim et al. 2013. RBBTI4 in Yoo et al. 2018. LOC_Os01g03340 .	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0124200	LOC_Os01g03340.1				GO:0046688 - response to copper ion, GO:0005576 - extracellular region, GO:0010106 - cellular response to iron ion starvation, GO:0004867 - serine-type endopeptidase inhibitor activity	TO:0000224 - iron sensitivity, TO:0000021 - copper sensitivity	
12534	RBBI3-2	RBBI3-2	BOWMAN-BIRK INHIBITOR 3-2		BOWMAN-BIRK INHIBITOR 3-2		1	AJ277468.	 Biochemical character	Os01g0124100	LOC_Os01g03330.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region		
12535	RBBI3-3	RBBI3-3, OsBBPI, BBPI	BOWMAN-BIRK INHIBITOR 3-3	Bowman-Birk protease inhibitor, Bowman-Birk proteinase inhibitor	BOWMAN-BIRK INHIBITOR 3-3		1	AJ277469. A2WK50, Q0JR25. U76004. Bowman-Birk proteinase inhibitor. OsBBPI in Ye et al. 2013. PR6 family protein.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0124401	LOC_Os01g03360.1				GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009642 - response to light intensity, GO:0009753 - response to jasmonic acid stimulus, GO:0005576 - extracellular region, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000075 - light sensitivity, TO:0000031 - silicon sensitivity, TO:0000261 - insect damage resistance	
12536	RBBI2-1	RBBI2-1	BOWMAN-BIRK INHIBITOR 2-1		BOWMAN-BIRK INHIBITOR 2-1		1	AJ277468. proteinase inhibitor.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os01g0124000	LOC_Os01g03320.1				GO:0006952 - defense response, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress	TO:0000168 - abiotic stress trait, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	
12537	RBBI2-2	RBBI2-2	BOWMAN-BIRK INHIBITOR 2-2		BOWMAN-BIRK INHIBITOR 2-2		1	AJ277468. LOC_Os01g03310.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0123900	LOC_Os01g03310.1				GO:0005576 - extracellular region, GO:0046688 - response to copper ion, GO:0004867 - serine-type endopeptidase inhibitor activity	TO:0000021 - copper sensitivity	
12538	RBBI2-3	RBBI2-3	BOWMAN-BIRK INHIBITOR 2-3		BOWMAN-BIRK INHIBITOR 2-3		1	AJ277470.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0124650	LOC_Os01g03390.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region		
12539	RBBI2-4	RBBI2-4	BOWMAN-BIRK INHIBITOR 2-4		BOWMAN-BIRK INHIBITOR 2-4		1	AJ277472.	 Biochemical character						GO:0005576 - extracellular region, GO:0004867 - serine-type endopeptidase inhibitor activity		
12540	RBBI2-0	RBBI2-0	BOWMAN-BIRK INHIBITOR 2-0		BOWMAN-BIRK INHIBITOR 2-0		1										
12541	_	Oswip1-1	_				1	The singledomain RBBI gene Oswip1-1 was similar to Wip1, a woundinducible BBI gene found in maize (Zea mays), wheat (Triticum aestivum), barley, and sorghum.									
12542	_	Oswip1-2	_				1	The singledomain RBBI gene Oswip1-2 was similar to Wip1, a woundinducible BBI gene found in maize (Zea mays), wheat (Triticum aestivum), barley, and sorghum.									
12543	POX	Pox, prx135	PEROXIDASE	Peroxidase, class III peroxidase 135	PEROXIDASE		12	BN000664.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0112000	LOC_Os12g02080.2, LOC_Os12g02080.1				GO:0048046 - apoplast, GO:0004601 - peroxidase activity, GO:0005618 - cell wall, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
12544	_	OsPR2, PR2, Gns4, OsGLN2	_	beta-1, 3-glucanase, beta-1, 3-glucanase 4, endo-1, 3-beta-glucanase, Pathogenesis related gene 2			1	LOC_Os01g71670. U72250. AF443600.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0944700	LOC_Os01g71670.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005886 - plasma membrane, GO:0005618 - cell wall, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009414 - response to water deprivation, GO:0048046 - apoplast, GO:0005975 - carbohydrate metabolic process, GO:0009617 - response to bacterium, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005773 - vacuole	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
12545	_	OsPR2, PR2, OsGlu1, Glu1	_	beta-1, 3-glucanase, pathogenesis-related protein 2			1	LOC_Os01g71340.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0940700	LOC_Os01g71340.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006952 - defense response, GO:0005975 - carbohydrate metabolic process	TO:0000112 - disease resistance	
12546	_	TLP, PR5	_	Thaumatin-like protein			3	LOC_Os03g46070. U77656.	 Tolerance and resistance - Disease resistance	Os03g0663500 	LOC_Os03g46070.1				GO:0009817 - defense response to fungus, incompatible interaction, GO:0009651 - response to salt stress		
12547	PAL	OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8	PHENYLALANINE AMMONIA-LYASE	phenylalanine ammonia-lyase, phenylalanine ammonia-lyase 2	PHENYLALANINE AMMONIA-LYASE		2	LOC_Os02g41650. XM466845. PAL2 in Koshiba et al. 2013. Z15085. OsPAL2 in Tonnessen et al. 2014, Wang et al. 2017, Zhou et al. 2018, Xu et al. 2018. OsPAL8 in Yang et al. 2016.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0626400	LOC_Os02g41650.1, LOC_Os02g41650.2, LOC_Os02g41650.3				GO:0005737 - cytoplasm, GO:0006559 - L-phenylalanine catabolic process, GO:0009800 - cinnamic acid biosynthetic process, GO:0009807 - lignan biosynthetic process, GO:0009411 - response to UV, GO:0009635 - response to herbicide, GO:0009751 - response to salicylic acid stimulus, GO:0045548 - phenylalanine ammonia-lyase activity	TO:0000074 - blast disease, TO:0000160 - UV light sensitivity, TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000058 - herbicide sensitivity	
12548	_	Sci1, PR6, OsSci1, OsPR6	_	pathogenesis-related 6			12	AY878693.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0437800	LOC_Os12g25090.2, LOC_Os12g25090.1				GO:0009611 - response to wounding, GO:0004867 - serine-type endopeptidase inhibitor activity		
12549	_	OsCLP3, OsClp3, CLP3	_	ATP-dependent Clp protease proteolytic subunit 3, Clp protease 3			2	LOC_Os02g42290. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0634500	LOC_Os02g42290.3, LOC_Os02g42290.2, LOC_Os02g42290.1				GO:0008270 - zinc ion binding, GO:0004252 - serine-type endopeptidase activity, GO:0005759 - mitochondrial matrix, GO:0006508 - proteolysis, GO:0009535 - chloroplast thylakoid membrane, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0050897 - cobalt ion binding		
12550	_	OsSGS3	_	suppressor of gene silencing 3			12	Q2QWE9. a rice homolog of Arabidopsis thaliana suppressor of gene silencing 3 (AtSGS3).	 Tolerance and resistance - Disease resistance	Os12g0197500	LOC_Os12g09580.1				GO:0031047 - gene silencing by RNA, GO:0050688 - regulation of defense response to virus, GO:0005737 - cytoplasm		
12551	_	OsPR1, OsPR1a, PR1a, PR1	_	PATHOGEN RESPONSE GENE 1, PATHOGENESIS-RELATED 1a			7	AF306651. AP006172.	 Tolerance and resistance - Disease resistance	Os07g0129300	LOC_Os07g03730.1				GO:0005576 - extracellular region		
12552	_	PIOX, RalphaO	_	Pathogen-inducible oxygenase, fatty acid alpha-oxygenase, alpha-oxygenase, Rice alpha-oxygenase, rice fatty acid alpha-(di)oxygenase			12	AAF64042.	 Biochemical character	Os12g0448900	LOC_Os12g26290.6, LOC_Os12g26290.5, LOC_Os12g26290.4, LOC_Os12g26290.3, LOC_Os12g26290.2, LOC_Os12g26290.1				GO:0001561 - fatty acid alpha-oxidation, GO:0016165 - lipoxygenase activity, GO:0020037 - heme binding, GO:0001676 - long-chain fatty acid metabolic process, GO:0010150 - leaf senescence, GO:0004601 - peroxidase activity, GO:0009751 - response to salicylic acid stimulus, GO:0008219 - cell death, GO:0006979 - response to oxidative stress		
12553	_	OsAsp1	_	aspartic protease 1			11	AY043216, AY043217. Q0IU52, A2ZC67. 	 Biochemical character,  Seed - Morphological traits - Embryo	Os11g0184800	LOC_Os11g08200.1				GO:0009505 - plant-type cell wall, GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis		
12554	_	OsRAL6	_				7	a candidate gene controlling gelatinization temperature.	 Seed - Physiological traits - Storage substances						GO:0004190 - aspartic-type endopeptidase activity, GO:0009505 - plant-type cell wall, GO:0006508 - proteolysis		
12555	MIR156C	miR156c, OsmiR156c, osmiR156c, osa-miR156c, osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p	MICRORNA156C	micro RNA 156c, microRNA156c, osa-miRNA156c			1	miRBase accession: MI0000655. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. OsmiR156b and OsmiR156c are mapped to the same transcription unit (accession no. AK110797). EU004233-EU004275 (Japonica, Indica and O. rufipogon)LM383044 LM379143	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease	
12556	MIR156D	miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d	MICRORNA156D	micro RNA 156d, microRNA156d, osa-miRNA156d			2	miRBase accession: MI0000656. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family.LM379144	 Tolerance and resistance - Disease resistance,  Reproductive organ - Panicle, Mode of branching,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus	TO:0000329 - tillering ability, TO:0000050 - inflorescence branching, TO:0000456 - spikelet number, TO:0006032 - panicle size, TO:0000074 - blast disease	
12557	MIR156E	miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e	MICRORNA156E	micro RNA 156e, microRNA156e, osa-miRNA156e			4	miRBase accession: MI0000657. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. GO: 1901600: strigolactone metabolic process.LM379145	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex	TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000576 - stem length, TO:0002637 - leaf size, TO:0000329 - tillering ability, TO:0000074 - blast disease, TO:0000346 - tiller number	
12558	MIR156F	miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p	MICRORNA156F	micro RNA 156f, microRNA156f, osa-miRNA156f			8	miRBase accession: MI0000658. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. OsmiR156f may specifically regulate OsSPL3, OsSPL12, and OsSPL14 in the young culms (Liu et al. 2015).LM383045 LM379146	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease, TO:0000346 - tiller number, TO:0000207 - plant height	
12559	MIR156G	miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p	MICRORNA156G	micro RNA 156g, microRNA156g, osa-miRNA156g			9	miRBase accession: MI0000659. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. AY551210.LM383046 LM379147	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000429 - salt sensitivity, TO:0000074 - blast disease	
12560	MIR156I	miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i	MICRORNA156I	micro RNA 156i, microRNA156i, osa-miRNA156i			2	miRBASE accession: MI0000661. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family.LM379148	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000074 - blast disease	
12561	MIR156K	miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k	MICRORNA156K	micro RNA 156k, microRNA156k, osa-miRNA156k			9	miRBASE accession: MI0001090. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. AY551211. LM379303.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0046686 - response to cadmium ion		
12562	MIR156L	miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p	MICRORNA156L	micro RNA 156l, microRNA156l, osa-miRNA156l			5	miRBASE accession: MI0001091. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. AY551212. LM383063, LM379304.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion, GO:0016442 - RNA-induced silencing complex		
12563	MIR529B	miR529b, Osa-miR529b, OsmiR529b	MICRORNA529B	MICRORNA529b, osa-miRNA529b, os-miRNA529b	_		4	miRBASE accession: MI0005804. LM380532. Predicted target(s): Os08g0509600, LOC_Os09g21438, Os01g0922600, Os01g0880200, Os05g0228400, Os06g0483500, Os08g0461400.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12564	miR535	OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p	MICRORNA535	micro RNA 535			11	miRBASE accession: MI0003505.LM383086 LM379824	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12566	miR159B	OsmiR159b, osa-MIR159b	MICRORNA159B	micro RNA 159b			1	miRBASE accession: MI0001093. AY551214.LM379306	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000429 - salt sensitivity	
12567	miR159C	OsmiR159c, osa-MIR159c	MICRORNA159C	micro RNA 159c			1	miRBASE accession: MI0001094. predicted target(s): UDP-gluce glucyltransferase. AY551259.LM379307	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12568	miR159D	OsmiR159d, osa-MIR159d	MICRORNA159D	micro RNA 159d			1	miRBASE accession: MI0001095. AY551217.LM379308	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12569	miR159E	OsmiR159e, osa-MIR159e	MICRORNA159E	micro RNA 159e			1	miRBASE accession: MI0001096. AY551216.LM379309	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12570	miR159F	OsmiR159f, osa-MIR159f	MICRORNA159F	micro RNA 159f			1	miRBASE accession: MI0001097. predicted target(s): UDP-gluce glucyltransferase. AY551213.LM379310	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12572	MIR319B	OsmiR319b, Osa-miR319b	MICRORNA319B	rice microRNA319b, MicroRNA319b			1	miRBASE accession: MI0001099. predicted target(s): HEAT repeat family. AY551258. LM379312. TO:0000820: leaf vein morphology trait. Os01g0222001 (AK241923, protein-coding in RapDB) in Yang et al. 2013. 	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Other						GO:0009409 - response to cold, GO:0009965 - leaf morphogenesis, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000303 - cold tolerance, TO:0000370 - leaf width	
12573	MIR160B	miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b	MICRORNA160B	MICRORNA160b, osa-miRNA160b	_		6	miRBASE accession: MI0000664. Target: Os03g0265500 (coronatine-insensitive protein 1, OsCOI2). NolmiR-36 was negatively correlated with OsCOI2, particularly from the seedling to the booting stages, suggesting that this miRNA may play an important role during rice development (Yang et al. 2014).LM383049 LM379151	 Other						GO:0009733 - response to auxin stimulus, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000163 - auxin sensitivity	
12574	MIR160C	miR160c, osa-miR160c, osa-MIR160cosa-miR160c-3p osa-miR160c-5p	MICRORNA160C	MICRORNA160c, osa-miRNA160bc	_		8	miRBASE accession: MI0000665.LM383050 LM379152	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12575	MIR160D	miR160d, osa-miR160d, osa-MIR160dosa-miR160d-3p osa-miR160d-5p	MICRORNA160D	MICRORNA160d, osa-miRNA160d	_		3	miRBASE accession: MI0000666.LM383051 LM379153	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12576	MIR160E	miR160e, osa-miR160e, osa-MIR160eosa-miR160e-5p	MICRORNA160E	MICRORNA160e, osa-miRNA160e	_		7	miRBASE accession: MI0001100. AY551220, AY551221, AY551222, AY551223.LM379313	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12577	MIR160F	miR160f, osa-miR160f, osa-MIR160fosa-miR160f-3p osa-miR160f-5p	MICRORNA160F	MICRORNA160f, osa-miRNA160f	_		8	miRBASE accession: MI0001101. AY551218, AY551219.LM383064 LM379314	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12579	MIR164B	miR164b, osa-miR164b	MICRORNA164B	MICRORNA164b, osa-miRNA164b	_		5	miRBASE accession: MI0000669.LM379156	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12580	MIR164C	miR164c, osa-miR164c	MICRORNA164C	MICRORNA164c, osa-miRNA164c	_		5	miRBASE accession: MI0001103. AY551226. HM139198-HM139240 (O. sativa, O. rufipogon, O. barthii).LM379316	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12581	MIR164D	miR164d, osa-miR164d	MICRORNA164D	MICRORNA164d, osa-miRNA164d	_		2	miRBASE accession: MI0001104. AY551227. HM139241-HM139292 (O. sativa, O. rufipogon, O. barthii).LM379317	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12582	MIR164F	miR164f, osa-miR164f	MICRORNA164F	MICRORNA164f, osa-miRNA164f	_		5	miRBASE accession: MI0001159. AY551225.LM379362	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12584	MIR166B	miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p	MICRORNA166B	MICRORNA166b, osa-miRNA166b	_		6	miRBASE accession: MI0000671. AY551230. HM139340-HM139349.LM379158 LM383053	 Tolerance and resistance - Disease resistance,  Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
12585	MIR166C	miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p	MICRORNA166C	MICRORNA166c, osa-miRNA166c	_		3	miRBASE accession: MI0000672. HM139350-HM139360.LM379159 LM383054	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease	
12586	MIR166D	miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p	MICRORNA166D	MICRORNA166d, osa-miRNA166d	_		2	miRBASE accession: MI0000673. HM139361-HM139367.LM379160 LM383055	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage	TO:0000429 - salt sensitivity, TO:0000074 - blast disease	
12587	MIR166E	miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p	MICRORNA166E	MICRORNA166e, osa-miRNA166e	_		3	miRBASE accession: MI0000674. targets: Os03g0782100, Os03g0269800. HM139368-HM139377. LM379161, LM383056.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0046686 - response to cadmium ion		
12588	MIR166F	miR166f, osa-miR166f	MICRORNA166F	MICRORNA166f, osa-miRNA166f	_		10	miRBASE accession: MI0000675.LM379162	 Tolerance and resistance - Disease resistance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease	
12589	MIR166G	miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p	MICRORNA166G	MICRORNA166g, osa-miRNA166g	_		12	miRBASE accession: MI0001142. AY551234. LM379348, LM383076.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0046686 - response to cadmium ion, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12590	MIR166H	miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p	MICRORNA166H	MICRORNA166h, osa-miRNA166h	_		2	miRBASE accession: MI0001143. AY551233. HM139378-HM139389.LM379349 LM383077	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12591	MIR166I	miR166i, osa-miR166iosa-miR166i-3p	MICRORNA166I	MICRORNA166i, osa-miRNA166i	_		3	miRBASE accession: MI0001144. HM139390-HM139401. LM379350.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12592	MIR166K	miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p	MICRORNA166K	MICRORNA166k, osa-miRNA166k	_		2	miRBASE accession: MI0001107. HM139402-HM139410. LM379319, LM383065.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12593	MIR166L	miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p	MICRORNA166L	MICRORNA166l, osa-miRNA166l	_		9	miRBASE accession: MI0001108. AY551232. HM139411-HM139421.LM379320 LM383066	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12594	MIR166M	miR166m, osa-miR166m	MICRORNA166M	MICRORNA166m, osa-miRNA166m	_		8	miRBASE accession: MI0001157. AY551231. HM139422-HM139433. LM379360.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0046686 - response to cadmium ion, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12595	MIR166N	miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p	MICRORNA166N	MICRORNA166n, osa-miRNA166n, MICRORNA166j, osa-miRNA166j	_		3	miRBASE accession: MI0001158 (osa-MIR166j, Previous IDs: osa-miR166n). AY551229. HM139434-HM139443 . LM379361, LM383081. osa-MIR166n in Li et al. 2005, Wang et al. 2010, Jeong et al. 2011, Zhai et al. 2013. osa-miR166j in Kozomara and Griffiths-Jones 2011.	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
12603	MIR168B	miR168b, osa-miR168b, osa-MIR168b	MICRORNA168B	MICRORNA168b, osa-miRNA168b	_		2	miRBASE accession: MI0001116.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12605	MIR169B	miR169b, osa-miR169b, osa-MIR169b	MICRORNA169B	MICRORNA169b, osa-miRNA169b	_		6	miRBASE accession: MI0001117. AY551240.LM379328	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12606	MIR169C	miR169c, osa-miR169c, osa-MIR169c	MICRORNA169C	MICRORNA169c, osa-miRNA169c	_		4	miRBASE accession: MI0001118. AY551241.LM379329	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12607	MIR169D	miR169d, osa-miR169d, osa-MIR169d	MICRORNA169D	MICRORNA169d, osa-miRNA169d	_		9	miRBASE accession: MI0001119. AY551242.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12608	MIR169E	miR169e, osa-miR169e, osa-MIR169e	MICRORNA169E	MICRORNA169e, osa-miRNA169e	_		2	miRBASE accession: MI0001120.LM379330	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12609	MIR169F	miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2	MICRORNA169F	MICRORNA169f, osa-miRNA169f	_		2	miRBASE accession: MI0001121. AY551244. LM382868.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12610	MIR169H	miR169h, osa-miR169h, osa-MIR169h	MICRORNA169H	MICRORNA169h, osa-miRNA169h	_		8	miRBASE accession: MI0001123.LM379332	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
12611	MIR169I	miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2	MICRORNA169I	MICRORNA169i, osa-miRNA169i	_		8	miRBASE accession: MI0001124.LM383071 LM382869	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
12612	MIR169J	miR169j, osa-miR169j, osa-MIR169j	MICRORNA169J	MICRORNA169j, osa-miRNA169j	_		9	miRBASE accession: MI0001125. AY551246.LM379333	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage	TO:0000429 - salt sensitivity	
12613	MIR169K	miR169k, osa-miR169k, osa-MIR169k	MICRORNA169K	MICRORNA169k, osa-miRNA169k	_		9	miRBASE accession: MI0001126. AY551243.LM379334	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12614	MIR169L	miR169l, osa-miR169l, osa-MIR169l	MICRORNA169L	MICRORNA169l, osa-miRNA169l	_		8	miRBASE accession: MI0001127.LM379335	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12615	MIR169M	miR169m, osa-miR169m, osa-MIR169m	MICRORNA169M	MICRORNA169m, osa-miRNA169m	_		8	miRBASE accession: MI0001128. AY551245.LM379336	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12616	MIR169N	miR169n, osa-miR169n, osa-MIR169n	MICRORNA169N	MICRORNA169n, osa-miRNA169n	_		11	miRBASE accession: MI0001129.LM379337	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000429 - salt sensitivity	
12617	MIR169O	miR169o, osa-miR169o, osa-MIR169o	MICRORNA169O	MICRORNA169o, osa-miRNA169o	_		11	miRBASE accession: MI0001130.LM379338	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12618	MIR1430	miR1430, osa-miR1430, osa-MIR1430	MICRORNA1430	MICRORNA1430, osa-miRNA1430	_		12	miRBASE accession: MI0006970. predicted target(s): CCAAT-binding transcription factor.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12620	MIR171B	miR171b, osa-miR171b	MICRORNA171B	MICRORNA171b, osa-miRNA171b	_		8	miRBASE accession: MI0001133. target gene(s): GRAS transcription factors. AY551250. LM379339.	 Tolerance and resistance - Stress tolerance,  Other						GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12621	MIR171C	miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p	MICRORNA171C	MICRORNA171c, osa-miRNA171c, delayed heading	_	dh	4	miRBASE accession: MI0001134. target gene(s): GRAS transcription factors. AY551251. LM379340, LM383072. The corresponding mRNA of Os04g0623901 (OsMIR171c) is AK242153, which is predicted to encode a precursor of the osa-miR171c. The dh mutant presented one T-DNA insertion site in the promoter region of the gene Os04g0623901 (Fan et al. 2015). TO:0000748: leaf anatomy and morphology trait.	 Vegetative organ - Leaf,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os04g0623901					GO:0010228 - vegetative to reproductive phase transition, GO:0048573 - photoperiodism, flowering, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase	TO:0000137 - days to heading, TO:0006020 - shoot apical meristem development, TO:0002616 - flowering time	PO:0020148 - shoot apical meristem , PO:0000037 - shoot apex 
12622	MIR171D	miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p	MICRORNA171D	MICRORNA171d, osa-miRNA171d	_		10	miRBASE accession: MI0001135. target gene(s): GRAS transcription factors. AY551247.LM379341 LM383073	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12623	MIR171E	miR171e, osa-miR171eosa-miR171e-3p osa-miR171e-5p	MICRORNA171E	MICRORNA171e, osa-miRNA171e	_		3	miRBASE accession: MI0001136. target gene(s): GRAS transcription factors. AY551248.LM379342 LM383074	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12624	MIR171F	miR171f, osa-miR171fosa-miR171f-3p osa-miR171f-5p	MICRORNA171F	MICRORNA171f, osa-miRNA171f	_		3	miRBASE accession: MI0001137. target gene(s): GRAS transcription factors. AY551249.LM379343 LM383075	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12625	MIR171G	miR171g, osa-miR171g	MICRORNA171G	MICRORNA171g, osa-miRNA171g	_		7	miRBASE accession: MI0001138. target gene(s): GRAS transcription factors. LM379344.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12626	MIR171H	miR171h, osa-miR171h	MICRORNA171H	MICRORNA171h, osa-miRNA171h	_		4	miRBASE accession: MI0001147. target gene(s): GRAS transcription factors.LM379352	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12627	MIR171I	miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p	MICRORNA171I	MICRORNA171i, osa-miRNA171i	_		3	miRBASE accession: MI0001155. target gene(s): GRAS transcription factors. AY551252.LM379358 LM383080	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000429 - salt sensitivity	
12629	MIR390	OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p	MICRORNA390	rice microRNA390			3	miRBASE accession: MI0001690. Target gene: Os02g0194400 (OsSRK). LM383082, LM379515. TO:0006059: cadmium concentration. predicted target: Os03g0738400, Os07g0490400.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0009414 - response to water deprivation, GO:0046688 - response to copper ion, GO:0009411 - response to UV, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion, GO:0010311 - lateral root formation, GO:0009733 - response to auxin stimulus, GO:0042742 - defense response to bacterium, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0000160 - UV light sensitivity, TO:0000315 - bacterial disease resistance, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000021 - copper sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0000025 - root tip , PO:0020121 - lateral root , PO:0005029 - root primordium 
12630	MIR394	OsmiR394, miR394, osa-MIR394	MICRORNA394	MICRORNA394	_		2	miRBASE accession: MI0001027. LM379279. a target gene: LC4 (Os01g0923900). GO:2000024: regulation of leaf development. TO:0000829: leaf lamina morphology trait. 	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Other						GO:0001558 - regulation of cell growth, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0051510 - regulation of unidimensional cell growth, GO:0048366 - leaf development, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0009733 - response to auxin stimulus, GO:0016442 - RNA-induced silencing complex	TO:0002688 - leaf lamina joint bending, TO:0000074 - blast disease, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle	
12631	MIR395A	OsmiR395a, miR395a, osa-MIR395a	MICRORNA395A	MICRORNA395a	_		4	miRBASE accession: MI0001042.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12632	MIR395B	OsmiR395b, miR395b, osa-MIR395b	MICRORNA395B	MICRORNA395b	_		4	miRBASE accession: MI0001028. target gene(s): SULTR2 and APS1. predicted target(s): SULTR1. miR395.2 was specifically induced by sulfate starvation stress.LM379280	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12633	MIR395C	OsmiR395c, miR395c, osa-MIR395c	MICRORNA395C	MICRORNA395c	_		4	miRBASE accession: MI0001041. LM379290. predicted target: Os03g0738400, Os03g0743900.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex	TO:0000303 - cold tolerance	
12634	MIR395D	OsmiR395d, miR395d, osa-MIR395d	MICRORNA395D	MICRORNA395d	_		4	miRBASE accession: MI0001029.LM379281	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12635	MIR395E	OsmiR395e, miR395e, osa-MIR395e	MICRORNA395E	MICRORNA395e	_		4	miRBASE accession: MI0001030.LM379282	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12636	MIR395F	OsmiR395f, miR395f, osa-MIR395f	MICRORNA395F	MICRORNA395f	_		4	miRBASE accession: MI0001043.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12637	MIR395G	OsmiR395g, miR395g, osa-MIR395g	MICRORNA395G	MICRORNA395g	_		4	miRBASE accession: MI0001031.LM379283	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12638	MIR395H	OsmiR395h, miR395h, osa-MIR395h, OsamiR395h	MICRORNA395H	MICRORNA395h	_		8	miRBASE accession: MI0001032. LM379284. the predicted target genes: Os03g0743900, Os03g0195300, Os03g0195500, Os06g0143700 .	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0055063 - sulfate ion homeostasis, GO:0009970 - cellular response to sulfate starvation, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12639	MIR395I	OsmiR395i, miR395i, osa-MIR395i	MICRORNA395I	MICRORNA395i	_		8	miRBASE accession: MI0001033.LM379285	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12640	MIR395J	OsmiR395j, miR395j, osa-MIR395j	MICRORNA395J	MICRORNA395j	_		8	miRBASE accession: MI0001034.LM379286	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12641	MIR395K	OsmiR395k, miR395k, osa-MIR395k	MICRORNA395K	MICRORNA395k	_		8	miRBASE accession: MI0001035.LM379287	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12642	MIR395L	OsmiR395l, miR395l, osa-MIR395l	MICRORNA395L	MICRORNA395l	_		8	miRBASE accession: MI0001036.LM379288	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12643	MIR395M	OsmiR395m, miR395m, osa-MIR395m	MICRORNA395M	MICRORNA395m	_		4	miRBASE accession: MI0005084.LM380019	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12644	MIR395N	OsmiR395n, miR395n, osa-MIR395n	MICRORNA395N	MICRORNA395n	_		4	miRBASE accession: MI0005085.LM380020	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12645	MIR395O	OsmiR395o, miR395o, osa-MIR395o	MICRORNA395O	MICRORNA395o	_		4	miRBASE accession: MI0005086. predicted target: Os03g0738400, Os03g0743900.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0009409 - response to cold, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000303 - cold tolerance	
12646	MIR395P	OsmiR395p, miR395p, osa-MIR395p	MICRORNA395P	MICRORNA395p	_		4	miRBASE accession: MI0005087.LM380021	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12647	MIR395Q	OsmiR395q, miR395q, osa-MIR395q	MICRORNA395Q	MICRORNA395q	_		4	miRBASE accession: MI0005088.LM380022	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12648	MIR395R	OsmiR395r, miR395r, osa-MIR395r	MICRORNA395R	MICRORNA395r	_		4	miRBASE accession: MI0005092.LM380023	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12649	MIR395S	OsmiR395s, miR395s, osa-MIR395s	MICRORNA395S	MICRORNA395s	_		4	miRBASE accession: MI0001037.LM379289	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12650	MIR395T	OsmiR395t, miR395t, osa-MIR395t	MICRORNA395T	MICRORNA395t	_		9	miRBASE accession: MI0001038.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12651	MIR395U	OsmiR395u, miR395u, osa-MIR395u	MICRORNA395U	MICRORNA395u	_		9	miRBASE accession: MI0001044.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12652	MIR395V	OsmiR395v, miR395v, osa-MIR395v	MICRORNA395V	MICRORNA395v	_		9	miRBASE accession: MI0005090.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12653	MIR395W	OsmiR395w, miR395w, osa-MIR395w	MICRORNA395W	MICRORNA395w	_		9	miRBASE accession: MI0005091.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12654	MIR396C	miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c	MICRORNA396C	MICRORNA396c, osa-miRNA396c	_		2	miRBASE accession: MI0001048. predicted target(s): nitrate-induced NOI protein. LM383062, LM379293. target: Os02g0701300 (GS2/OsGRF4).	 Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Other						GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease, TO:0000397 - grain size, TO:0000396 - grain yield	
12655	MIR396D	miR396d, osa-miR396d, osa-MIR396d	MICRORNA396D	MICRORNA396d, osa-miRNA396d	_		4	miRBASE accession: MI0013049. TO:0000816: inflorescence bract anatomy and morphology trait. LM381452.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion	TO:0000074 - blast disease, TO:0000240 - sterile lemma length, TO:0006022 - floral organ development trait	
12656	MIR396F	miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p	MICRORNA396F	MICRORNA396f, osa-miRNA396f	_		2	miRBASE accession: MI0010563. HM139845-HM139881 (O. sativa, O. rufipogon).LM381785 LM381200	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
12657	MIR397A	miR397a, osa-miR397a, osa-MIR397a, OsmiR397a	MICRORNA397A	MICRORNA397a, osa-miRNA397a	_		6	miRBASE accession: MI0001049. The reported target for OsmiR397 is LOC_Os05g38420 (OsLAC) (Zhang et al. 2013). LM379294	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000180 - spikelet fertility, TO:0000605 - hydrogen peroxide content	
12658	MIR397B	miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b	MICRORNA397B	MICRORNA397b, osa-miRNA397b	_		2	miRBASE accession: MI0001050. The expression of miR397b.2 is induced by heat stress. target gene(s): L-ascorbate oxidase. The reported target for OsmiR397 is LOC_Os05g38420 (OsLAC) (Zhang et al. 2013).LM379295	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000180 - spikelet fertility, TO:0000605 - hydrogen peroxide content	
12659	MIR398A	miR398a, osa-miR398a, osa-MIR398a	MICRORNA398A	MICRORNA398a, osa-miRNA398a	_		10	miRBASE accession: MI0001051.	 Vegetative organ - Culm,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000149 - seed width, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000447 - filled grain number, TO:0000146 - seed length, TO:0000592 - 1000-dehulled grain weight	
12660	MIR398B	miR398b, osa-miR398b, osa-MIR398b	MICRORNA398B	MICRORNA398b, osa-miRNA398b	_		7	miRBASE accession: MI0001052. predicted target(s): RBC small chain C.LM379296	 Tolerance and resistance - Disease resistance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
12661	MIR399B	OsmiR399b, osa-MIR399b, miR399b	MICRORNA399B	MICRORNA399b, osa-miRNA399b	_		2	miRBASE accession: MI0001054. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)LM379298	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12662	MIR399C	OsmiR399c, osa-MIR399c, miR399c	MICRORNA399C	MICRORNA399c, osa-miRNA399c	_		5	miRBASE accession: MI0001055. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)LM379299	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12663	MIR399E	OsmiR399e, osa-MIR399e	MICRORNA399E	MICRORNA399e	_		1	miRBASE accession: MI0001057. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0010106 - cellular response to iron ion starvation, GO:0051365 - cellular response to potassium ion starvation, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12664	MIR399G	OsmiR399g, osa-MIR399g	MICRORNA399G	MICRORNA399g	_		2	miRBASE accession: MI0001059. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12665	MIR399H	OsmiR399h, osa-MIR399h	MICRORNA399H	MICRORNA399h	_		5	miRBASE accession: MI0001060. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)LM379301	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12666	MIR399I	OsmiR399i, osa-MIR399i, miR399i	MICRORNA399I	MICRORNA399i, osa-miRNA399i	_		2	miRBASE accession: MI0001061. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) HM139968-HM140009 (O. sativa, O. rufipogon).	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0016036 - cellular response to phosphate starvation, GO:0016442 - RNA-induced silencing complex, GO:0010106 - cellular response to iron ion starvation, GO:0051365 - cellular response to potassium ion starvation, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12667	MIR399K	OsmiR399k, osa-MIR399k	MICRORNA399K	MICRORNA399k	_		5	miRBASE accession: MI0001063. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011).  GO:0072732: cellular response to calcium ion starvation.	 Tolerance and resistance - Stress tolerance,  Other						GO:0010106 - cellular response to iron ion starvation, GO:0051365 - cellular response to potassium ion starvation, GO:0016036 - cellular response to phosphate starvation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12668	MIR413	miR413, osa-MIR413	MICRORNA413	MICRORNA413	_		12	miRBASE accession: MI0001433.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12669	MIR415	miR415, osa-MIR415	MICRORNA415	MICRORNA415	_		12	miRBASE accession: MI0001435.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12670	MIR416	miR416, osa-MIR416	MICRORNA416	MICRORNA416	_		4	miRBASE accession: MI0001436.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12671	MIR417	miR417, osa-MIR417	MICRORNA417	MICRORNA417	_		8	miRBASE accession: MI0001437.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12672	MIR418	miR418, osa-MIR418	MICRORNA418	MICRORNA418	_		2	miRBASE accession: MI0001438.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12673	MIR419	miR419, osa-MIR419	MICRORNA419	MICRORNA419	_		12	miRBASE accession: MI0001439.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12674	MIR420	miR420, osa-MIR420	MICRORNA420	MICRORNA420	_			miRBASE accession: MI0001440. (Dead miRNA entry : The pattern of reads that map to the MIR420 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12675	MIR426	miR426, osa-MIR426	MICRORNA426	MICRORNA426	_		5	miRBASE accession: MI0001442.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12676	MIR435	miR435, osa-MIR435	MICRORNA435	MICRORNA435	_		3	miRBASE accession: MI0001687.LM379513	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12677	MIR437	miR437, osa-MIR437	MICRORNA437	MICRORNA437	_		2	miRBASE accession: MI0001688.LM379514	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12678	MIR438	miR438, osa-MIR438	MICRORNA438	MICRORNA438	_		6	miRBASE accession: MI0001689.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12679	MIR439A	miR439a, osa-MIR439a	MICRORNA439A	MICRORNA439a	_		1	miRBASE accession: MI0001691.LM379516	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12680	MIR439B	miR439b, osa-MIR439b	MICRORNA439B	MICRORNA439b	_		10	miRBASE accession: MI0001692.LM379517	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12681	MIR439C	miR439c, osa-MIR439c	MICRORNA439C	MICRORNA439c	_		7	miRBASE accession: MI0001693.LM379518	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12682	MIR439D	miR439d, osa-MIR439d	MICRORNA439D	MICRORNA439d	_		3	miRBASE accession: MI0001694.LM379519	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12683	MIR439E	miR439e, osa-MIR439e	MICRORNA439E	MICRORNA439e	_		8	miRBASE accession: MI0001695.LM379520	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12684	MIR439F	miR439f, osa-MIR439f	MICRORNA439F	MICRORNA439f	_		9	miRBASE accession: MI0001696.LM379521	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12685	MIR439G	miR439g, osa-MIR439g	MICRORNA439G	MICRORNA439g	_		8	miRBASE accession: MI0001697.LM379522	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12686	MIR439H	miR439h, osa-MIR439h	MICRORNA439H	MICRORNA439h	_		6	miRBASE accession: MI0001698.LM379523	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12687	MIR439J	miR439j, osa-MIR439j	MICRORNA439J	MICRORNA439j	_		10	miRBASE accession: MI0001700.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12688	MIR440	miR440, osa-MIR440	MICRORNA440	MICRORNA440	_		11	miRBASE accession: MI0001701.LM379524	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12689	MIR441A	miR441a, osa-MIR441a	MICRORNA441A	MICRORNA441a	_			miRBASE accession: MI0001704. (Dead miRNA entry: The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12690	MIR441B	miR441b, osa-MIR441b	MICRORNA441B	MICRORNA441b	_			miRBASE accession: MI0001705. (Dead miRNA entry: The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12691	MIR441C	miR441c, osa-MIR441c	MICRORNA441C	MICRORNA441c	_			miRBASE accession: MI0001706. (Dead miRNA entry: The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). 	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12692	MIR442	miR442, osa-MIR442	MICRORNA442	MICRORNA442	_			miRBASE accession: MI0001707. (Dead miRNA entry: The pattern of reads that map to the MIR442 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). 	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12693	MIR443	miR443, osa-MIR443	MICRORNA443	MICRORNA443	_		3	miRBASE accession: MI0001708.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12694	MIR444B	miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2	MICRORNA444B	MICRORNA444b	_			miRBASE accession: MI0006974. LM380734, LM380733.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0046686 - response to cadmium ion, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12695	MIR444C	miR444c, osa-MIR444c, osa-miR444c, osa-miR444c.1, osa-miR444c.2	MICRORNA444C	MICRORNA444c	_			miRBASE accession: MI0006975. LM380736, LM380735.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12696	MIR444D	miR444d, osa-MIR444d, osa-miR444d, osa-miR444d.1, osa-miR444d.2, osa-miR444d.3	MICRORNA444D	MICRORNA444d	_			miRBASE accession: MI0006976. LM380739, LM380738, LM380737.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12697	MIR444E	miR444e, osa-MIR444e	MICRORNA444E	MICRORNA444e	_			miRBASE accession: MI0006977.LM380740	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12698	MIR444F	miR444f, osa-MIR444f	MICRORNA444F	MICRORNA444f	_			miRBASE accession: MI0006978. predicted target(s): MADS-box transcription factors.LM380741	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12699	MIR445A	miR445a, osa-MIR445a	MICRORNA445A	MICRORNA445a	_			miRBASE accession: MI0001709. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12700	MIR445B	miR445b, osa-MIR445b	MICRORNA445B	MICRORNA445b	_			miRBASE accession: MI0001710. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12701	MIR445C	miR445c, osa-MIR445c	MICRORNA445C	MICRORNA445c	_			miRBASE accession: MI0001711. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12702	MIR445D	miR445d, osa-MIR445d	MICRORNA445D	MICRORNA445d	_			miRBASE accession: MI0001712. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12703	MIR445E	miR445e, osa-MIR445e	MICRORNA445E	MICRORNA445e	_			miRBASE accession: MI0001713. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12704	MIR445F	miR445f, osa-MIR445f	MICRORNA445F	MICRORNA445f	_			miRBASE accession: MI0001714. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12705	MIR445G	miR445g, osa-MIR445g	MICRORNA445G	MICRORNA445g	_			miRBASE accession: MI0001715. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12706	MIR445I	miR445i, osa-MIR445i	MICRORNA445I	MICRORNA445i	_			miRBASE accession: MI0001717. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12707	MIR446	miR446, osa-MIR446	MICRORNA446	MICRORNA446	_			miRBASE accession: MI0001718. (Dead miRNA entry: The pattern of reads that map to the MIR446 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12708	MIR531	miR531, osa-MIR531	MICRORNA531	MICRORNA531	_		11	miRBASE accession: MI0003204. 	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12709	MIR531A2	miR531a2, osa-MIR531a2	MICRORNA531A2	MICRORNA531a2	_				 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12710	MIR531B	miR531b, osa-MIR531b	MICRORNA531B	MICRORNA531b	_		1	miRBASE accession: MI0008222. Predicted target(s): Os01g0813700, Os04g0645200, Os09g0536700, Os10g0485500, Os12g0541300, Os02g0681100, Os02g0793400, Os03g0794200, Os04g0563000, Os09g0514900, Os10g0545300, Os11g0144900, LOC_Os11g31140.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12711	MIR806A	miR806a, osa-MIR806a	MICRORNA806A	MICRORNA806a	_			miRBASE accession: MI0005210. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12712	MIR806B	miR806b, osa-MIR806b	MICRORNA806B	MICRORNA806b	_			miRBASE accession: MI0005211. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12713	MIR806C	miR806c, osa-MIR806c	MICRORNA806C	MICRORNA806c	_			miRBASE accession: MI0005212. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12714	MIR806D	miR806d, osa-MIR806d	MICRORNA806D	MICRORNA806d	_			miRBASE accession: MI0005213. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12715	MIR806E	miR806e, osa-MIR806e	MICRORNA806E	MICRORNA806e	_			miRBASE accession: MI0005214. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12716	MIR806F	miR806f, osa-MIR806f	MICRORNA806F	MICRORNA806f	_			miRBASE accession: MI0005215. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12717	MIR806G	miR806g, osa-MIR806g	MICRORNA806G	MICRORNA806g	_			miRBASE accession: MI0005216. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12718	MIR806H	miR806h, osa-MIR806h	MICRORNA806H	MICRORNA806h	_			miRBASE accession: MI0005217. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12719	MIR807A	miR807a, osa-MIR807a	MICRORNA807A	MICRORNA807a	_			miRBASE accession: MI0005209. (Dead miRNA entry: The pattern of reads that map to the MIR807 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12720	MIR807B	miR807b, osa-MIR807b	MICRORNA807B	MICRORNA807b	_			miRBASE accession: MI0005218. (Dead miRNA entry: The pattern of reads that map to the MIR807 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12721	MIR807C	miR807c, osa-MIR807c	MICRORNA807C	MICRORNA807c	_			miRBASE accession: MI0005219. (Dead miRNA entry: The pattern of reads that map to the MIR807 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12722	MIR808	miR808, osa-MIR808	MICRORNA808	MICRORNA808	_			miRBASE accession: MI0005220. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12723	MIR809A	miR809a, osa-MIR809a	MICRORNA809A	MICRORNA809a	_			miRBASE accession: MI0005221. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12724	MIR809B	miR809b, osa-MIR809b	MICRORNA809B	MICRORNA809b	_			miRBASE accession: MI0005222. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12725	MIR809C	miR809c, osa-MIR809c	MICRORNA809C	MICRORNA809c	_			miRBASE accession: MI0005223. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12726	MIR809D	miR809d, osa-MIR809d	MICRORNA809D	MICRORNA809d	_			miRBASE accession: MI0005224. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12727	MIR809E	miR809e, osa-MIR809e	MICRORNA809E	MICRORNA809e	_			miRBASE accession: MI0005225. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12728	MIR809F	miR809f, osa-MIR809f	MICRORNA809F	MICRORNA809f	_			miRBASE accession: MI0005226. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12729	MIR809G	miR809g, osa-MIR809g	MICRORNA809G	MICRORNA809g	_			miRBASE accession: MI0005227. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12730	MIR809H	miR809h, osa-MIR809h	MICRORNA809H	MICRORNA809h	_			miRBASE accession: MI0005228. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12731	MIR811A	miR811a, osa-miR811a, osa-MIR811a	MICRORNA811A	MICRORNA811a, osa-miRNA811a	_			miRBASE accession: MI0005230. (Dead miRNA entry: The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12732	MIR811B	miR811b, osa-miR811b, osa-MIR811b	MICRORNA811B	MICRORNA811b, osa-miRNA811b	_			miRBASE accession: MI0005231. (Dead miRNA entry: The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12733	MIR811C	miR811c, osa-miR811c, osa-MIR811c	MICRORNA811C	MICRORNA811c, osa-miRNA811c	_			miRBASE accession: MI0005232. (Dead miRNA entry: The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12734	MIR812A	miR812a, osa-miR812a, osa-MIR812a	MICRORNA812A	MICRORNA812a, osa-miRNA812a	_		1	miRBASE accession: MI0005233. LM380041	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12735	MIR812B	miR812b, osa-miR812b, osa-MIR812b	MICRORNA812B	MICRORNA812b, osa-miRNA812b	_		2	miRBASE accession: MI0005234. LM380042	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12736	MIR812C	miR812c, osa-miR812c, osa-MIR812c	MICRORNA812C	MICRORNA812c, osa-miRNA812c	_		6	miRBASE accession: MI0005235. LM380043	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12737	MIR812D	miR812d, osa-miR812d, osa-MIR812d	MICRORNA812D	MICRORNA812d, osa-miRNA812d	_		7	miRBASE accession: MI0005236. LM380044	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12738	MIR812E	miR812e, osa-miR812e, osa-MIR812e	MICRORNA812E	MICRORNA812e, osa-miRNA812e	_		8	miRBASE accession: MI0005237. LM380045	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12739	MIR812F	miR812f, osa-miR812f, osa-MIR812f	MICRORNA812F	MICRORNA812f, osa-miRNA812f	_		4	miRBASE accession: MI0008271. Predicted target(s): Os02g0176100.LM381046	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12740	MIR812H	miR812h, osa-miR812h, osa-MIR812h	MICRORNA812H	MICRORNA812h, osa-miRNA812h	_		3	miRBASE accession: MI0008297. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.LM381062	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12741	MIR812I	miR812i, osa-miR812i, osa-MIR812i	MICRORNA812I	MICRORNA812i, osa-miRNA812i	_		7	miRBASE accession: MI0008298. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.LM381063	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12742	MIR812J	miR812j, osa-miR812j, osa-MIR812j	MICRORNA812J	MICRORNA812j, osa-miRNA812j	_		8	miRBASE accession: MI0008299. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.LM381064	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12743	MIR813	miR813, osa-miR813, osa-MIR813	MICRORNA813	MICRORNA813, osa-miRNA813	_			miRBASE accession: MI0005238. (Dead miRNA entry: The pattern of reads that map to the MIR813 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12744	MIR814A	miR814a, osa-miR814a, osa-MIR814a	MICRORNA814A	MICRORNA814a, osa-miRNA814a	_		1	miRBASE accession: MI0005239.LM380046	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12745	MIR814B	miR814b, osa-miR814b, osa-MIR814b	MICRORNA814B	MICRORNA814b, osa-miRNA814b	_		2	miRBASE accession: MI0005240.LM380047	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12746	MIR814C	miR814c, osa-miR814c, osa-MIR814c	MICRORNA814C	MICRORNA814c, osa-miRNA814c	_		2	miRBASE accession: MI0005241.LM380048	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12747	MIR815A	miR815a, osa-miR815a, osa-MIR815a, OsmiR815a	MICRORNA815A	MICRORNA815a, osa-miRNA815a	_		5	miRBASE accession: MI0005242.LM380049	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12748	MIR815B	miR815b, osa-miR815b, osa-MIR815b, OsmiR815b	MICRORNA815B	MICRORNA815b, osa-miRNA815b	_		5	miRBASE accession: MI0005243.LM380050	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12749	MIR815C	miR815c, osa-miR815c, osa-MIR815c, OsmiR815c	MICRORNA815C	MICRORNA815c, osa-miRNA815c	_		7	miRBASE accession: MI0005244.LM380051	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12750	MIR816	miR816, osa-miR816, osa-MIR816	MICRORNA816	MICRORNA816, osa-miRNA816	_		10	miRBASE accession: MI0005245.LM380052	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12751	MIR817	miR817, osa-miR817, osa-MIR817	MICRORNA817	MICRORNA817, osa-miRNA817	_		2	miRBASE accession: MI0005246.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12752	MIR818A	miR818a, osa-miR818a, osa-MIR818a	MICRORNA818A	MICRORNA818a, osa-miRNA818a	_		1	miRBASE accession: MI0005247. LM380053. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12753	MIR818B	miR818b, osa-miR818b, osa-MIR818b	MICRORNA818B	MICRORNA818b, osa-miRNA818b	_		2	miRBASE accession: MI0005248. LM380054. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12754	MIR818C	miR818c, osa-miR818c, osa-MIR818c	MICRORNA818C	MICRORNA818c, osa-miRNA818c	_		2	miRBASE accession: MI0005249. LM380055. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12755	MIR818D	miR818d, osa-miR818d, osa-MIR818d	MICRORNA818D	MICRORNA818d, osa-miRNA818d	_		4	miRBASE accession: MI0005250. LM380056. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12756	MIR818E	miR818e, osa-miR818e, osa-MIR818e	MICRORNA818E	MICRORNA818e, osa-miRNA818e	_		7	miRBASE accession: MI0005251. LM380057. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12757	MIR819A	miR819a, osa-miR819a, osa-MIR819a	MICRORNA819A	MICRORNA819a, osa-miRNA819a	_			miRBASE accession: MI0005252. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12758	MIR819B	miR819b, osa-miR819b, osa-MIR819b	MICRORNA819B	MICRORNA819b, osa-miRNA819b	_			miRBASE accession: MI0005253. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12759	MIR819C	miR819c, osa-miR819c, osa-MIR819c	MICRORNA819C	MICRORNA819c, osa-miRNA819c	_			miRBASE accession: MI0005254. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12760	MIR819D	miR819d, osa-miR819d, osa-MIR819d	MICRORNA819D	MICRORNA819d, osa-miRNA819d	_			miRBASE accession: MI0005255. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12761	MIR819E	miR819e, osa-miR819e, osa-MIR819e	MICRORNA819E	MICRORNA819e, osa-miRNA819e	_			miRBASE accession: MI0005256. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12762	MIR819F	miR819f, osa-miR819f, osa-MIR819f	MICRORNA819F	MICRORNA819f, osa-miRNA819f	_			miRBASE accession: MI0005257. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12763	MIR819G	miR819g, osa-miR819g, osa-MIR819g	MICRORNA819G	MICRORNA819g, osa-miRNA819g	_			miRBASE accession: MI0005258. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12764	MIR819H	miR819h, osa-miR819h, osa-MIR819h	MICRORNA819H	MICRORNA819h, osa-miRNA819h	_			miRBASE accession: MI0005259. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12765	MIR819I	miR819i, osa-miR819i, osa-MIR819i	MICRORNA819I	MICRORNA819i, osa-miRNA819i	_			miRBASE accession: MI0005260. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12766	MIR819J	miR819j, osa-miR819j, osa-MIR819j	MICRORNA819J	MICRORNA819j, osa-miRNA819j	_			miRBASE accession: MI0005261. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12767	MIR819K	miR819k, osa-miR819k, osa-MIR819k	MICRORNA819K	MICRORNA819k, osa-miRNA819k	_			miRBASE accession: MI0005262. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12768	MIR820A	miR820a, osa-miR820a, osa-MIR820a, OsmiR820a	MICRORNA820A	MICRORNA820a, osa-miRNA820a	_		1	miRBASE accession: MI0005263. target: Os03g0110800 (DRM2). LM380058. predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0035195 - gene silencing by miRNA	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
12769	MIR820B	miR820b, osa-miR820b, osa-MIR820b, OsmiR820b	MICRORNA820B	MICRORNA820b, osa-miRNA820b	_		7	miRBASE accession: MI0005264. target: Os03g0110800 (DRM2). LM380059. predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
12770	MIR820C	miR820c, osa-miR820c, osa-MIR820c, OsmiR820c	MICRORNA820C	MICRORNA820c, osa-miRNA820c	_		10	miRBASE accession: MI0005265. target: Os03g0110800 (DRM2). LM380060. predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0009408 - response to heat, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
12771	MIR821A	miR821a, osa-miR821a, osa-MIR821a	MICRORNA821A	MICRORNA821a, osa-miRNA821a	_		3	miRBASE accession: MI0005266.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12772	MIR821B	miR821b, osa-miR821b, osa-MIR821b	MICRORNA821B	MICRORNA821b, osa-miRNA821b	_		7	miRBASE accession: MI0005267.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12773	MIR821C	miR821c, osa-miR821c, osa-MIR821c	MICRORNA821C	MICRORNA821c, osa-miRNA821c	_		8	miRBASE accession: MI0005268.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12775	MIR1317	miR1317, osa-miR1317, osa-MIR1317	MICRORNA1317	MICRORNA1317, osa-miRNA1317	_		10	miRBASE accession: MI0009714. (Dead miRNA entry: Forward to:MI0008292 (osa-MIR1882e),  The sequences annotated as MIR1317 and MIR1882e in miRBase 19 map to a single locus in the MSU7 genome assembly. The entries are merged in miRBase 20.)	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12776	MIR1318	miR1318, osa-miR1318, osa-MIR1318	MICRORNA1318	MICRORNA1318, osa-miRNA1318	_		7	miRBASE accession: MI0009715. (Dead miRNA entry: Forward to:MI0006972 (osa-MIR1432),  The sequences annotated as MIR1318 and MIR1432 in miRBase 19 map to a single locus in the MSU7 genome assembly. The entries are merged in miRBase 20.) HM138917-HM138970 (O. sativa, O. rufipogon, O. barthii).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12777	MIR1319	miR1319, osa-miR1319, osa-MIR1319, osa-MIR1319a, osa-miR1319a	MICRORNA1319	MICRORNA1319, osa-miRNA1319	_		11	miRBASE accession: MI0009716. LM381130.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12778	MIR1320	miR1320, osa-miR1320, osa-MIR1320osa-miR1320-3p osa-miR1320-5p	MICRORNA1320	MICRORNA1320, osa-miRNA1320	_		6	miRBASE accession: MI0009717.LM381781 LM381131	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
12779	MIR1423	miR1423, osa-miR1423, osa-MIR1423, miR1423bosa-miR1423-5p	MICRORNA1423	MICRORNA1423, osa-miRNA1423	_		4	miRBASE accession: MI0006963. miR1423b in Zhu et al. 2008.LM381774	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12780	MIR1424	miR1424, osa-miR1424, osa-MIR1424	MICRORNA1424	MICRORNA1424, osa-miRNA1424	_		7	miRBASE accession: MI0006964.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12782	MIR1426	miR1426, osa-miR1426, osa-MIR1426	MICRORNA1426	MICRORNA1426, osa-miRNA1426	_		1	miRBASE accession: MI0006966.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12783	MIR1427	miR1427, osa-miR1427, osa-MIR1427	MICRORNA1427	MICRORNA1427, osa-miRNA1427	_		8	miRBASE accession: MI0006967. Predicted target in Jeong et al. 2008: class I Clp ATPase C1 (Os04g0397100). Target gene in Sunkar et al. 2008: Os04g0397100, Os06g0260500.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12784	MIR1428A	miR1428a, osa-miR1428a, osa-MIR1428a	MICRORNA1428A	MICRORNA1428a, osa-miRNA1428a	_		1	miRBASE accession: MI0006968.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12785	MIR1428B	miR1428b, osa-miR1428b, osa-MIR1428b	MICRORNA1428B	MICRORNA1428b, osa-miRNA1428b	_		1	miRBASE accession: MI0008235. Predicted target(s): Os12g0479300.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12786	MIR1428C	miR1428c, osa-miR1428c, osa-MIR1428c	MICRORNA1428C	MICRORNA1428c, osa-miRNA1428c	_		2	miRBASE accession: MI0008237. Predicted target(s): Os12g0479300.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12787	MIR1428D	miR1428d, osa-miR1428d, osa-MIR1428d	MICRORNA1428D	MICRORNA1428d, osa-miRNA1428d	_		3	miRBASE accession: MI0008238. Stem-loop predicted structures for osa-miR1428e and osa-miR1428d found in AK102950 (Os03g0611100). Predicted target(s): Os12g0479300.	 Other	Os03g0611100					GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12789	MIR1428G	miR1428g, osa-miR1428g, osa-MIR1428g	MICRORNA1428G	MICRORNA1428g, osa-miRNA1428g	_		10	miRBASE accession: MI0010549.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12790	MIR1429	miR1429, osa-miR1429, osa-MIR1429osa-miR1429-3p osa-miR1429-5p	MICRORNA1429	MICRORNA1429, osa-miRNA1429	_		8	miRBASE accession: MI0006969.LM380729 LM381145	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12791	MIR1431	miR1431, osa-miR1431, osa-MIR1431	MICRORNA1431	MICRORNA1431, osa-miRNA1431	_		1	miRBASE accession: MI0006971.LM380730	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12792	MIR1435	miR1435, osa-miR1435, osa-MIR1435	MICRORNA1435	MICRORNA1435, osa-miRNA1435	_		1	miRBASE accession: MI0007021.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12793	MIR1436	miR1436, osa-miR1436, osa-MIR1436	MICRORNA1436	MICRORNA1436, osa-miRNA1436	_		1	miRBASE accession: MI0007022. LM380744. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12794	MIR1437	miR1437, osa-miR1437, osa-MIR1437, osa-MIR1437a, osa-miR1437a	MICRORNA1437	MICRORNA1437, osa-miRNA1437	_		8	miRBASE accession: MI0007024. LM380745.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12795	MIR1438	miR1438, osa-miR1438, osa-MIR1438	MICRORNA1438	MICRORNA1438, osa-miRNA1438	_		10	miRBASE accession: MI0007025.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12796	MIR1439	miR1439, osa-miR1439, osa-MIR1439	MICRORNA1439	MICRORNA1439, osa-miRNA1439	_		12	miRBASE accession: MI0007031.LM380748	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12797	MIR1440	miR1440, osa-miR1440, osa-MIR1440	MICRORNA1440	MICRORNA1440, osa-miRNA1440	_		9	miRBASE accession: MI0007028 (osa-MIR1440a).	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12798	MIR1441	miR1441, osa-miR1441, osa-MIR1441	MICRORNA1441	MICRORNA1441, osa-miRNA1441	_		12	miRBASE accession: MI0007029.LM380746	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12799	MIR1442	miR1442, osa-miR1442, osa-MIR1442	MICRORNA1442	MICRORNA1442, osa-miRNA1442	_		7	miRBASE accession: MI0007030.LM380747	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12800	MIR1846A	miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p	MICRORNA1846A	MICRORNA1846a, osa-miRNA1846a	_		10	miRBASE accession: MI0008242. Predicted target(s): LOC_Os02g43950, LOC_Os10g12320.LM381020	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12801	MIR1846B	miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p	MICRORNA1846B	MICRORNA1846b, osa-miRNA1846b	_		11	miRBASE accession: MI0008243. Predicted target(s): LOC_Os02g43950, LOC_Os10g12320. LM381021	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12802	MIR1846C	miR1846c, osa-miR1846c, osa-MIR1846c	MICRORNA1846C	MICRORNA1846c, osa-miRNA1846c	_		12	miRBASE accession: MI0010321. Predicted target(s): LOC_Os02g43950, LOC_Os10g12320. 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12803	MIR1846D	miR1846d, osa-miR1846d, osa-MIR1846dosa-miR1846d-3p osa-miR1846d-5p	MICRORNA1846D	MICRORNA1846d, osa-miRNA1846d	_		1	miRBASE accession: MI0008223. Predicted target(s): P0456E05.19, Os02g0707200, Os09g0457400.LM381011 LM381010	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12804	MIR1846E	miR1846e, osa-miR1846e, osa-MIR1846e	MICRORNA1846E	MICRORNA1846e, osa-miRNA1846e	_		9	miRBASE accession: MI0010547.LM381195	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12805	MIR1847	miR1847, osa-miR1847, osa-MIR1847	MICRORNA1847	MICRORNA1847, osa-miRNA1847	_		1	miRBASE accession: MI0008224. predicted target(s): LRR-protein kinase. Predicted target(s): Os09g0556200, Os11g0460500.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12806	MIR1848	miR1848, osa-miR1848, osa-MIR1848	MICRORNA1848	MICRORNA1848, osa-miRNA1848	_		4	miRBASE accession: MI0008225. Predicted target(s): Os04g0481900, Os02g0569900, Os08g0207600, Os12g0281600, Os06g0663600, Os11g0249400, Os01g0611200, Os02g0569400, Os06g0238900, Os06g0305400, Os07g0584200, Os10g0562200.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0007623 - circadian rhythm, GO:0035195 - gene silencing by miRNA, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0010025 - wax biosynthetic process, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009651 - response to salt stress	TO:0000053 - pollen sterility, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000391 - seed size, TO:0000206 - leaf angle, TO:0006031 - inflorescence size, TO:0000445 - seed number, TO:0000207 - plant height, TO:0006001 - salt tolerance	
12807	MIR1849	miR1849, osa-miR1849, osa-MIR1849	MICRORNA1849	MICRORNA1849, osa-miRNA1849	_		4	miRBASE accession: MI0008226.LM381012	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12808	MIR1850	miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.3	MICRORNA1850	MICRORNA1850, osa-miRNA1850	_		5	miRBASE accession: MI0008227. EU563917, EU563918. LM381013, LM381146. Predicted target(s): AK068321, Os06g0484400, Os04g0410300, Os09g0467200.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12809	MIR1851	miR1851, osa-miR1851, osa-MIR1851	MICRORNA1851	MICRORNA1851, osa-miRNA1851	_		5	miRBASE accession: MI0008228. Predicted target(s): LOC_Os01g61520.LM381014	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12810	MIR1852	miR1852, osa-miR1852, osa-MIR1852	MICRORNA1852	MICRORNA1852, osa-miRNA1852	_		5	miRBASE accession: MI0008229.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12811	MIR1853	miR1853, osa-miR1853, osa-MIR1853osa-miR1853-3p	MICRORNA1853	MICRORNA1853, osa-miRNA1853	_		8	miRBASE accession: MI0008230. Predicted target(s): Os02g0596900, Os09g0433600.LM381015	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12812	MIR1854	miR1854, osa-miR1854, osa-MIR1854	MICRORNA1854	MICRORNA1854, osa-miRNA1854	_		8	miRBASE accession: MI0008231. Predicted target(s): Os12g0576750.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12813	MIR1855	miR1855, osa-miR1855, osa-MIR1855	MICRORNA1855	MICRORNA1855, osa-miRNA1855	_		11	miRBASE accession: MI0008232. Predicted target(s): Os03g0622300, Os05g0176100, Os01g0654500.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12814	MIR1856	miR1856, osa-miR1856, osa-MIR1856	MICRORNA1856	MICRORNA1856, osa-miRNA1856	_		11	miRBASE accession: MI0008233.LM381016	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12815	MIR1857	miR1857, osa-miR1857, osa-MIR1857osa-miR1857-3p osa-miR1857-5p	MICRORNA1857	MICRORNA1857, osa-miRNA1857	_		11	miRBASE accession: MI0008234.LM381018 LM381017	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12816	MIR1858A	miR1858a, osa-miR1858a, osa-MIR1858a	MICRORNA1858A	MICRORNA1858a, osa-miRNA1858a	_		9	miRBASE accession: MI0008240. Predicted target(s): Os01g0740500, Os01g0743300, Os04g0419550, Os07g0442000, Os04g0439400, Os01g0319200, Os01g0321700, Os03g0307100, Os06g0558300, Os02g0308800, Os02g0775600, Os06g0247500, Os08g0326600.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12817	MIR1858B	miR1858b, osa-miR1858b, osa-MIR1858b	MICRORNA1858B	MICRORNA1858b, osa-miRNA1858b	_		9	miRBASE accession: MI0008241. Predicted target(s): Os01g0740500, Os01g0743300, Os04g0419550, Os07g0442000, Os04g0439400, Os01g0319200, Os01g0321700, Os03g0307100, Os06g0558300, Os02g0308800, Os02g0775600, Os06g0247500, Os08g0326600.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12818	MIR1859	miR1859, osa-miR1859, osa-MIR1859	MICRORNA1859	MICRORNA1859, osa-miRNA1859	_		1	miRBASE accession: MI0008244. Predicted target(s): Os07g0492000.LM381022	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12819	MIR1860	miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p	MICRORNA1860	MICRORNA1860, osa-miRNA1860	_		1	miRBASE accession: MI0008245. Predicted target(s): Os11g0593500, Os09g0530700. LM381024. LM381023. predicted target: Os03g0738400.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex	TO:0000303 - cold tolerance	
12820	MIR1861A	miR1861a, osa-miR1861a, osa-MIR1861a	MICRORNA1861A	MICRORNA1861a, osa-miRNA1861a	_		1	miRBASE accession: MI0008247.LM381025	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12821	MIR1861A2	miR1861a2, osa-miR1861a2, osa-MIR1861a2	MICRORNA1861A2	MICRORNA1861a2, osa-miRNA1861a2	_				 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12822	MIR1861B	miR1861b, osa-miR1861b, osa-MIR1861b	MICRORNA1861B	MICRORNA1861b, osa-miRNA1861b	_		2	miRBASE accession: MI0008248. Predicted target(s): Os05g0596600.LM381026	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12823	MIR1861C	miR1861c, osa-miR1861c, osa-MIR1861c	MICRORNA1861C	MICRORNA1861c, osa-miRNA1861c	_		2	miRBASE accession: MI0008249.LM381027	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12824	MIR1861D	miR1861d, osa-miR1861d, osa-MIR1861d	MICRORNA1861D	MICRORNA1861d, osa-miRNA1861d	_		4	miRBASE accession: MI0008250.LM381028	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12825	MIR1861E	miR1861e, osa-miR1861e, osa-MIR1861e	MICRORNA1861E	MICRORNA1861e, osa-miRNA1861e	_		4	miRBASE accession: MI0008251.LM381029	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12826	MIR1861F	miR1861f, osa-miR1861f, osa-MIR1861f	MICRORNA1861F	MICRORNA1861f, osa-miRNA1861f	_		5	miRBASE accession: MI0008252. Predicted target(s): Os05g0596600.LM381030	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12827	MIR1861G	miR1861g, osa-miR1861g, osa-MIR1861g	MICRORNA1861G	MICRORNA1861g, osa-miRNA1861g	_		5	miRBASE accession: MI0008253.LM381031	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12828	MIR1861H	miR1861h, osa-miR1861h, osa-MIR1861h	MICRORNA1861H	MICRORNA1861h, osa-miRNA1861h	_		6	miRBASE accession: MI0008254. Predicted target(s): Os05g0596600.LM381032	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12829	MIR1861I	miR1861i, osa-miR1861i, osa-MIR1861i	MICRORNA1861I	MICRORNA1861i, osa-miRNA1861i	_		6	miRBASE accession: MI0008255. Predicted target(s): Os05g0596600.LM381033	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12830	MIR1861J	miR1861j, osa-miR1861j, osa-MIR1861j	MICRORNA1861J	MICRORNA1861j, osa-miRNA1861j	_		8	miRBASE accession: MI0008256. Predicted target(s): Os05g0596600.LM381034	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12831	MIR1861K	miR1861k, osa-miR1861k, osa-MIR1861k	MICRORNA1861K	MICRORNA1861k, osa-miRNA1861k	_		8	miRBASE accession: MI0008257.LM381035	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12832	MIR1861L	miR1861l, osa-miR1861l, osa-MIR1861l	MICRORNA1861L	MICRORNA1861l, osa-miRNA1861l	_		9	miRBASE accession: MI0008258. Predicted target(s): Os05g0596600.LM381036	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12833	MIR1861M	miR1861m, osa-miR1861m, osa-MIR1861m	MICRORNA1861M	MICRORNA1861m, osa-miRNA1861m	_		9	miRBASE accession: MI0008259.LM381037	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12834	MIR1861N	miR1861n, osa-miR1861n, osa-MIR1861n	MICRORNA1861N	MICRORNA1861n, osa-miRNA1861n	_		12	miRBASE accession: MI0008260. Predicted target(s): Os03g0129200.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12835	MIR1862A	miR1862a, osa-miR1862a, osa-MIR1862a	MICRORNA1862A	MICRORNA1862a, osa-miRNA1862a	_		1	miRBASE accession: MI0008261. Predicted target(s): Os01g0794800/Os01g0795000 (LOC_Os01g58240).LM381038	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12836	MIR1862B	miR1862b, osa-miR1862b, osa-MIR1862b	MICRORNA1862B	MICRORNA1862b, osa-miRNA1862b	_		8	miRBASE accession: MI0008262. Predicted target(s): Os01g0794800/Os01g0795000 (LOC_Os01g58240).LM381039	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12837	MIR1862C	miR1862c, osa-miR1862c, osa-MIR1862c	MICRORNA1862C	MICRORNA1862c, osa-miRNA1862c	_		10	miRBASE accession: MI0008263. Predicted target(s): Os01g0794800/Os01g0795000 (LOC_Os01g58240).LM381040	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12838	MIR1862D	miR1862d, osa-miR1862d, osa-MIR1862d	MICRORNA1862D	MICRORNA1862d, osa-miRNA1862d	_		10	miRBASE accession: MI0008279. Predicted target(s): Os02g0511500, Os01g0794800/Os01g0795000 (LOC_Os01g58240). HM139627-HM139675 (O. sativa, O. rufipogon, O. barthii).LM381054	 Tolerance and resistance - Disease resistance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
12839	MIR1862E	miR1862e, osa-miR1862e, osa-MIR1862e	MICRORNA1862E	MICRORNA1862e, osa-miRNA1862e	_		11	miRBASE accession: MI0008282. Predicted target(s): Os04g0380300, Os02g0511500.LM381056	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12840	MIR1863	miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a	MICRORNA1863	MICRORNA1863, osa-miRNA1863, osa-miRNA1863a	_		2	miRBASE accession: MI0008264. LM381041.	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
12841	MIR1864	miR1864, osa-miR1864, osa-MIR1864	MICRORNA1864	MICRORNA1864, osa-miRNA1864	_		2	miRBASE accession: MI0008265.LM381042	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12842	MIR1865	miR1865, osa-miR1865, osa-MIR1865osa-miR1865-3p osa-miR1865-5p	MICRORNA1865	MICRORNA1865, osa-miRNA1865	_		3	miRBASE accession: MI0008266.LM381044 LM381043	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12843	MIR1866	miR1866, osa-miR1866, osa-MIR1866	MICRORNA1866	MICRORNA1866, osa-miRNA1866	_		3	miRBASE accession: MI0008267.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000429 - salt sensitivity	
12844	MIR1868	miR1868, osa-miR1868, osa-MIR1868	MICRORNA1868	MICRORNA1868, osa-miRNA1868	_		4	miRBASE accession: MI0008270.LM381045	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12845	MIR1869	miR1869, osa-miR1869, osa-MIR1869	MICRORNA1869	MICRORNA1869, osa-miRNA1869	_		4	miRBASE accession: MI0008272.LM381047	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12846	MIR1867	miR1867, osa-miR1867, osa-MIR1867	MICRORNA1867	MICRORNA1867, osa-miRNA1867	_			miRBASE accession: MI0008268 (Dead miRNA entry: The pattern of deep sequencing reads derived from the MIR1867 locus is not consistent with miRNA processing. The sequence is removed from miRBase 20. ). Predicted target(s): Os03g0411600. HM139676-HM139732 (O. sativa, O. rufipogon, O. barthii).	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12847	MIR1870	miR1870, osa-miR1870, osa-MIR1870osa-miR1870-3p osa-miR1870-5p	MICRORNA1870	MICRORNA1870, osa-miRNA1870	_		6	miRBASE accession: MI0008273.LM381777 LM381048	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12848	MIR1871	miR1871, osa-miR1871, osa-MIR1871	MICRORNA1871	MICRORNA1871, osa-miRNA1871	_		6	miRBASE accession: MI0008274. predicted target(s): glutaredoxin.LM381049	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12849	MIR1872	miR1872, osa-miR1872, osa-MIR1872	MICRORNA1872	MICRORNA1872, osa-miRNA1872	_		6	miRBASE accession: MI0008275. Predicted target(s): LOC_Os12g14230, Os06g0683000.LM381050	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12850	MIR1873	miR1873, osa-miR1873, osa-MIR1873	MICRORNA1873	MICRORNA1873, osa-miRNA1873	_		7	miRBASE accession: MI0008276.LM381051	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12851	MIR1875	miR1875, osa-miR1875, osa-MIR1875	MICRORNA1875	MICRORNA1875, osa-miRNA1875	_		9	miRBASE accession: MI0008278.LM381053	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12852	MIR1876	miR1876, osa-miR1876, osa-MIR1876	MICRORNA1876	MICRORNA1876, osa-miRNA1876	_		10	miRBASE accession: MI0008280. Predicted target(s): Os01g0188900.LM381055	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12853	MIR1877	miR1877, osa-miR1877, osa-MIR1877	MICRORNA1877	MICRORNA1877, osa-miRNA1877	_		9	miRBASE accession: MI0008283.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12854	MIR1878	miR1878, osa-miR1878, osa-MIR1878	MICRORNA1878	MICRORNA1878, osa-miRNA1878	_		9	miRBASE accession: MI0008284.LM381057	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12855	MIR1879	miR1879, osa-miR1879, osa-MIR1879	MICRORNA1879	MICRORNA1879, osa-miRNA1879	_		10	miRBASE accession: MI0008285.LM381058	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12856	MIR1880	miR1880, osa-miR1880, osa-MIR1880	MICRORNA1880	MICRORNA1880, osa-miRNA1880	_		11	miRBASE accession: MI0008286.LM381059	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12857	MIR1881	miR1881, osa-miR1881, osa-MIR1881	MICRORNA1881	MICRORNA1881, osa-miRNA1881	_		12	miRBASE accession: MI0008287.LM381060	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12858	MIR1882A	miR1882a, osa-miR1882a, osa-MIR1882a	MICRORNA1882A	MICRORNA1882a, osa-miRNA1882a	_		3	miRBASE accession: MI0008288.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12859	MIR1882B	miR1882b, osa-miR1882b, osa-MIR1882b	MICRORNA1882B	MICRORNA1882b, osa-miRNA1882b	_			miRBASE accession: MI0008289.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12860	MIR1882C	miR1882c, osa-miR1882c, osa-MIR1882c	MICRORNA1882C	MICRORNA1882c, osa-miRNA1882c	_		7	miRBASE accession: MI0008290.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12861	MIR1882D	miR1882d, osa-miR1882d, osa-MIR1882d	MICRORNA1882D	MICRORNA1882d, osa-miRNA1882d	_		8	miRBASE accession: MI0008291.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12862	MIR1882E	miR1882e, osa-miR1882e, osa-MIR1882e	MICRORNA1882E	MICRORNA1882e, osa-miRNA1882e	_		10	miRBASE accession: MI0008292.	 Tolerance and resistance - Disease resistance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
12863	MIR1882F	miR1882f, osa-miR1882f, osa-MIR1882f	MICRORNA1882F	MICRORNA1882f, osa-miRNA1882f	_		11	miRBASE accession: MI0008293.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12864	MIR1882G	miR1882g, osa-miR1882g, osa-MIR1882g	MICRORNA1882G	MICRORNA1882g, osa-miRNA1882g	_		11	miRBASE accession: MI0008294.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12865	MIR1882H	miR1882h, osa-miR1882h, osa-MIR1882h	MICRORNA1882H	MICRORNA1882h, osa-miRNA1882h	_		12	miRBASE accession: MI0008295.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12866	MIR1883A	miR1883a, osa-miR1883a, osa-MIR1883a	MICRORNA1883A	MICRORNA1883a, osa-miRNA1883a	_		11	miRBASE accession: MI0008300. Predicted target(s): LOC_Os12g15260.LM381065	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12867	MIR1883B	miR1883b, osa-miR1883b, osa-MIR1883b	MICRORNA1883B	MICRORNA1883b, osa-miRNA1883b	_		11	miRBASE accession: MI0008301. Predicted target(s): LOC_Os12g15260.LM381066	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12868	MIR1884A	miR1884a, osa-miR1884a, osa-MIR1884a	MICRORNA1884A	MICRORNA1884a, osa-miRNA1884a	_			miRBASE accession: MI0008246 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR1884 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12869	MIR1884B	miR1884b, osa-miR1884b, osa-MIR1884b	MICRORNA1884B	MICRORNA1884b, osa-miRNA1884b	_			miRBASE accession: MI0008281 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR1884 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).). predicted target(s): cytochrome P450.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12870	MIR2090	miR2090, osa-miR2090, osa-MIR2090	MICRORNA2090	MICRORNA2090, osa-miRNA2090	_		1	miRBASE accession: MI0010550.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12871	MIR2091	miR2091, osa-miR2091, osa-MIR2091	MICRORNA2091	MICRORNA2091, osa-miRNA2091	_		12	miRBASE accession: MI0010551.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12872	MIR2092	miR2092, osa-miR2092, osa-MIR2092	MICRORNA2092	MICRORNA2092, osa-miRNA2092	_		12	miRBASE accession: MI0010552.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12873	MIR2093	miR2093, osa-miR2093, osa-MIR2093osa-miR2093-5p	MICRORNA2093	MICRORNA2093, osa-miRNA2093	_		5	miRBASE accession: MI0010553.LM381196	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12874	MIR2094	miR2094, osa-miR2094, osa-MIR2094	MICRORNA2094	MICRORNA2094, osa-miRNA2094	_		2	miRBASE accession: MI0010554.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12875	MIR2095	miR2095, osa-miR2095, osa-MIR2095	MICRORNA2095	MICRORNA2095, osa-miRNA2095	_		10	miRBASE accession: MI0010555.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12876	MIR2096	miR2096, osa-miR2096, osa-MIR2096osa-miR2096-3p osa-miR2096-5p	MICRORNA2096	MICRORNA2096, osa-miRNA2096	_		1	miRBASE accession: MI0010556.LM381198 LM381197	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12877	MIR2097	miR2097, osa-miR2097, osa-MIR2097osa-miR2097-5p	MICRORNA2097	MICRORNA2097, osa-miRNA2097	_		1	miRBASE accession: MI0010557.LM381199	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12878	MIR2098	miR2098, osa-miR2098, osa-MIR2098	MICRORNA2098	MICRORNA2098, osa-miRNA2098	_		10	miRBASE accession: MI0010558.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12879	MIR2099	miR2099, osa-miR2099, osa-MIR2099	MICRORNA2099	MICRORNA2099, osa-miRNA2099	_		1	miRBASE accession: MI0010559.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12880	MIR2100	miR2100, osa-miR2100, osa-MIR2100	MICRORNA2100	MICRORNA2100, osa-miRNA2100	_		11	miRBASE accession: MI0010560.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12881	MIR2101	miR2101, osa-miR2101, osa-MIR2101	MICRORNA2101	MICRORNA2101, osa-miRNA2101	_		12	miRBASE accession: MI0010561.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12882	MIR2102	miR2102, osa-miR2102, osa-MIR2102	MICRORNA2102	MICRORNA2102, osa-miRNA2102	_		5	miRBASE accession: MI0010562.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12883	MIR2103	miR2103, osa-miR2103, osa-MIR2103	MICRORNA2103	MICRORNA2103, osa-miRNA2103	_		12	miRBASE accession: MI0010564.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12884	MIR2104	miR2104, osa-miR2104, osa-MIR2104	MICRORNA2104	MICRORNA2104, osa-miRNA2104	_		11	miRBASE accession: MI0010565.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12885	MIR2105	miR2105, osa-miR2105, osa-MIR2105	MICRORNA2105	MICRORNA2105, osa-miRNA2105	_		12	miRBASE accession: MI0010566.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12886	MIR2106	miR2106, osa-miR2106, osa-MIR2106	MICRORNA2106	MICRORNA2106, osa-miRNA2106	_		2	miRBASE accession: MI0010567.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12887	MIR2118A	miR2118a, osa-miR2118a, osa-MIR2118a	MICRORNA2118A	MICRORNA2118a, osa-miRNA2118a	_		4	miRBASE accession: MI0011251.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12888	MIR2118B	miR2118b, osa-miR2118b, osa-MIR2118b	MICRORNA2118B	MICRORNA2118b, osa-miRNA2118b	_		4	miRBASE accession: MI0011252.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12889	MIR2118C	miR2118c, osa-miR2118c, osa-MIR2118c	MICRORNA2118C	MICRORNA2118c, osa-miRNA2118c	_		4	miRBASE accession: MI0011253.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12890	MIR2118D	miR2118d, osa-miR2118d, osa-MIR2118d	MICRORNA2118D	MICRORNA2118d, osa-miRNA2118d	_		4	miRBASE accession: MI0011254.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12891	MIR2118E	miR2118e, osa-miR2118e, osa-MIR2118e	MICRORNA2118E	MICRORNA2118e, osa-miRNA2118e	_		4	miRBASE accession: MI0011255.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12892	MIR2118F	miR2118f, osa-miR2118f, osa-MIR2118f	MICRORNA2118F	MICRORNA2118f, osa-miRNA2118f	_		4	miRBASE accession: MI0011256.	 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0035195 - gene silencing by miRNA, GO:0009908 - flower development, GO:0048232 - male gamete generation, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000622 - flower development trait	PO:0001083 - inflorescence development stage , PO:0005051 - hypodermis , PO:0009029 - stamen , PO:0007615 - flower development stage , PO:0005679 - epidermis , PO:0025277 - pollen sac , PO:0006327 - spikelet meristem 
12893	MIR2118G	miR2118g, osa-miR2118g, osa-MIR2118g	MICRORNA2118G	MICRORNA2118g, osa-miRNA2118g	_		4	miRBASE accession: MI0011257.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12894	MIR2118H	miR2118h, osa-miR2118h, osa-MIR2118h	MICRORNA2118H	MICRORNA2118h, osa-miRNA2118h	_		4	miRBASE accession: MI0011258.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12895	MIR2118I	miR2118i, osa-miR2118i, osa-MIR2118i	MICRORNA2118I	MICRORNA2118i, osa-miRNA2118i	_		4	miRBASE accession: MI0011259.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12896	MIR2118J	miR2118j, osa-miR2118j, osa-MIR2118j	MICRORNA2118J	MICRORNA2118j, osa-miRNA2118j	_		4	miRBASE accession: MI0011260.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12897	MIR2118K	miR2118k, osa-miR2118k, osa-MIR2118k	MICRORNA2118K	MICRORNA2118k, osa-miRNA2118k	_		4	miRBASE accession: MI0011261.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12898	MIR2118L	miR2118l, osa-miR2118l, osa-MIR2118l	MICRORNA2118L	MICRORNA2118l, osa-miRNA2118l	_		4	miRBASE accession: MI0011262.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12899	MIR2118M	miR2118m, osa-miR2118m, osa-MIR2118m	MICRORNA2118M	MICRORNA2118m, osa-miRNA2118m	_		4	miRBASE accession: MI0011263.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12900	MIR2118N	miR2118n, osa-miR2118n, osa-MIR2118n	MICRORNA2118N	MICRORNA2118n, osa-miRNA2118n	_		4	miRBASE accession: MI0011264.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12901	MIR2118O	miR2118o, osa-miR2118o, osa-MIR2118o	MICRORNA2118O	MICRORNA2118o, osa-miRNA2118o	_		4	miRBASE accession: MI0011265.LM381268	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12902	MIR2118P	miR2118p, osa-miR2118p, osa-MIR2118p	MICRORNA2118P	MICRORNA2118p, osa-miRNA2118p	_		11	miRBASE accession: MI0011266.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12903	MIR2118Q	miR2118q, osa-miR2118q, osa-MIR2118q	MICRORNA2118Q	MICRORNA2118q, osa-miRNA2118q	_		11	miRBASE accession: MI0011267.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12904	MIR2118R	miR2118r, osa-miR2118r, osa-MIR2118r	MICRORNA2118R	MICRORNA2118r, osa-miRNA2118r	_		11	miRBASE accession: MI0011268.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12905	MIR2120	miR2120, osa-miR2120, osa-MIR2120	MICRORNA2120	MICRORNA2120, osa-miRNA2120	_		11	miRBASE accession: MI0010708.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12906	MIR2121B	miR2121b, osa-miR2121b, osa-MIR2121b	MICRORNA2121B	MICRORNA2121b, osa-miRNA2121b	_		4	miRBASE accession: MI0010710.LM381227	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12907	MIR2122	miR2122, osa-miR2122, osa-MIR2122	MICRORNA2122	MICRORNA2122, osa-miRNA2122	_		2	miRBASE accession: MI0010711.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12908	MIR2123a	miR2123a, osa-miR213a, osa-MIR2123a	MICRORNA2123A	MICRORNA2123a, osa-miRNA2123a	_			miRBASE accession: MI0010712 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12909	MIR2123b	miR2123b, osa-miR213b, osa-MIR2123b	MICRORNA2123B	MICRORNA2123b, osa-miRNA2123b	_			miRBASE accession: MI0010713 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12910	MIR2123C	miR2123c, osa-miR213c, osa-MIR2123c	MICRORNA2123C	MICRORNA2123c, osa-miRNA2123c	_			miRBASE accession: MI0010714 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12911	MIR2124A	miR2124a, osa-miR214a, osa-MIR2124a	MICRORNA2124A	MICRORNA2124a, osa-miRNA2124a	_			miRBASE accession: MI0010715 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12912	MIR2124C	miR2124c, osa-miR214c, osa-MIR2124c	MICRORNA2124C	MICRORNA2124c, osa-miRNA2124c	_			miRBASE accession: MI0010717 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12913	MIR2124D	miR2124d, osa-miR214d, osa-MIR2124d	MICRORNA2124D	MICRORNA2124d, osa-miRNA2124d	_			miRBASE accession: MI0010718 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12914	MIR2124E	miR2124e, osa-miR214e, osa-MIR2124e	MICRORNA2124E	MICRORNA2124e, osa-miRNA2124e	_			miRBASE accession: MI0010719 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12915	MIR2124F	miR2124f, osa-miR214f, osa-MIR2124f	MICRORNA2124F	MICRORNA2124f, osa-miRNA2124f	_			miRBASE accession: MI0010720 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12916	MIR2124G	miR2124g, osa-miR214g, osa-MIR2124g	MICRORNA2124G	MICRORNA2124g, osa-miRNA2124g	_			miRBASE accession: MI0010721 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12917	MIR2124H	miR2124h, osa-miR214h, osa-MIR2124h	MICRORNA2124H	MICRORNA2124h, osa-miRNA2124h	_			miRBASE accession: MI0010724 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12918	MIR2124I	miR2124i, osa-miR214i, osa-MIR2124i	MICRORNA2124I	MICRORNA2124i, osa-miRNA2124i	_			miRBASE accession: MI0010722 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12919	MIR2125	miR2125, osa-miR215, osa-MIR2125	MICRORNA2125	MICRORNA2125, osa-miRNA2125	_			miRBASE accession: MI0010723 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12920	MIR2275A	miR2275a, osa-miR2275a, osa-MIR2275a	MICRORNA2275A	MICRORNA2275a, osa-miRNA2275a	_		8	miRBASE accession: MI0011269.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12921	MIR2275B	miR2275b, osa-miR2275b, osa-MIR2275b	MICRORNA2275B	MICRORNA2275b, osa-miRNA2275b	_		8	miRBASE accession: MI0011270.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12922	MIR2124B	miR2124b, osa-miR214b, osa-MIR2124b	MICRORNA2124B	MICRORNA2124b, osa-miRNA2124b	_			miRBASE accession: MI0010716 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12923	MIR1319B	miR1319b, osa-miR1319b, osa-MIR1319b	MICRORNA1319B	MICRORNA1319b, osa-miRNA1319b	_		3	miRBASE accession: MI0019843.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12924	MIR2275D	miR2275d, osa-miR2275d, osa-MIR2275d	MICRORNA2275D	MICRORNA2275d, osa-miRNA2275d	_		8	miRBASE accession: MI0019043. predicted target(s): Mitochondrial ATP synthase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12925	MIR2863C	miR2863c, osa-miR2863c, osa-MIR2863c	MICRORNA2863C	MICRORNA2863c, osa-miRNA2863c	_		2	miRBASE accession: MI0018060.LM382893	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12926	MIR2873C	miR2873c, osa-miR2873c, osa-MIR2873c	MICRORNA2873C	MICRORNA2873c, osa-miRNA2873c	_		7	miRBASE accession: MI0019856. predicted target(s): dnaJ domain protein.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12927	MIR3979	miR3979, osa-miR3979, osa-MIR3979osa-miR3979-3p osa-miR3979-5p	MICRORNA3979	MICRORNA3979, osa-miRNA3979	_		11	miRBASE accession: MI0017251. predicted target(s): phphoribyltransferase. Under nitrogen starvation conditions, miR3979 was downregulated in roots.LM382520 LM382519	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12928	MIR5143A	miR5143a, osa-miR5143a, osa-MIR5143a	MICRORNA5143A	MICRORNA5143a, osa-miRNA5143a	_		1	miRBASE accession: MI0018055. predicted target(s): phphoinitide 5-phphatase.LM382887	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12929	MIR5147	miR5147, osa-miR5147, osa-MIR5147	MICRORNA5147	MICRORNA5147, osa-miRNA5147	_		2	miRBASE accession: MI0018059. predicted target(s): oligopeptidase.LM382892	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12930	MIR5150	miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p	MICRORNA5150	MICRORNA5150, osa-miRNA5150	_		4	miRBASE accession: MI0018065.LM382899 LM382898	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12931	MIR5152	miR5152, osa-miR5152, osa-MIR5152	MICRORNA5152	MICRORNA5152, osa-miRNA5152	_		5	miRBASE accession: MI0018067.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12932	MIR5179	miR5179, osa-miR5179, osa-MIR5179	MICRORNA5179	MICRORNA5179, osa-miRNA5179	_		2	miRBASE accession: MI0019851. predicted target(s): MADS-box transcription factor.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12933	MIR5485	miR5485, osa-miR5485, osa-MIR5485	MICRORNA5485	MICRORNA5485, osa-miRNA5485	_		3	miRBASE accession: MI0019003. predicted target(s): Calle synthase.LM382917	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12934	MIR5488	miR5488, osa-miR5488, osa-MIR5488	MICRORNA5488	MICRORNA5488, osa-miRNA5488	_		12	miRBASE accession: MI0019006.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12935	MIR5491	miR5491, osa-miR5491, osa-MIR5491	MICRORNA5491	MICRORNA5491, osa-miRNA5491	_		9	miRBASE accession: MI0019009. predicted target(s): LRR-protein kinase.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12936	MIR5508	miR5508, osa-miR5508, osa-MIR5508	MICRORNA5508	MICRORNA5508, osa-miRNA5508	_		6	miRBASE accession: MI0019026. predicted target(s): cytochrome P450.LM382925	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12937	MIR5513	miR5513, osa-miR5513, osa-MIR5513	MICRORNA5513	MICRORNA5513, osa-miRNA5513	_		3	miRBASE accession: MI0019031. predicted target(s): ATP binding protein.LM382927	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12938	MIR5516A	miR5516a, osa-miR5516a, osa-MIR5516a	MICRORNA5516A	MICRORNA5516a, osa-miRNA5516a	_		5	miRBASE accession: MI0019035.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12939	MIR5516B	miR5516b, osa-miR5516b, osa-MIR5516b	MICRORNA5516B	MICRORNA5516b, osa-miRNA5516b	_		5	miRBASE accession: MI0019859.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12940	MIR5519	miR5519, osa-miR5519, osa-MIR5519	MICRORNA5519	MICRORNA5519, osa-miRNA5519	_		12	miRBASE accession: MI0019038. predicted target(s): zinc finger B-box protein.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12941	MIR5788	miR5788, osa-miR5788, osa-MIR5788, NolmiR-3	MICRORNA5788	MICRORNA5788, osa-miRNA5788	_		3	miRBASE accession: MI0019798. predicted target(s): LTP family protein, SET domain. target: LOC_Os12g02330 (non-specific lipid-transfer protein, nsLTP). The target (nsLTP) was negatively regulated by NolmiR-3, indicating that the NolmiR-3 may play an important role in development and defense in plants (Yang et al. 2014).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12942	MIR5789	miR5789, osa-miR5789, osa-MIR5789	MICRORNA5789	MICRORNA5789, osa-miRNA5789	_		6	miRBASE accession: MI0019801.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12943	MIR5791	miR5791, osa-miR5791, osa-MIR5791	MICRORNA5791	MICRORNA5791, osa-miRNA5791	_		12	miRBASE accession: MI0019803.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12944	MIR5792	miR5792, osa-miR5792, osa-MIR5792	MICRORNA5792	MICRORNA5792, osa-miRNA5792	_		10	miRBASE accession: MI0019804. predicted target(s): SAC domain protein.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12945	MIR5793	miR5793, osa-miR5793, osa-MIR5793	MICRORNA5793	MICRORNA5793, osa-miRNA5793	_		11	miRBASE accession: MI0019805.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12946	MIR5794	miR5794, osa-miR5794, osa-MIR5794	MICRORNA5794	MICRORNA5794, osa-miRNA5794	_			miRBASE accession: MI0019806. predicted target(s): F-box.	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000074 - blast disease	
12947	MIR5795	miR5795, osa-miR5795, osa-MIR5795	MICRORNA5795	MICRORNA5795, osa-miRNA5795	_		9	miRBASE accession: MI0019808. predicted target(s): Integral membrane protein DUF6.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12948	MIR5796	miR5796, osa-miR5796, osa-MIR5796	MICRORNA5796	MICRORNA5796, osa-miRNA5796	_		8	miRBASE accession: MI0019809. predicted target(s): agenet domain protein.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12949	MIR5797	miR5797, osa-miR5797, osa-MIR5797	MICRORNA5797	MICRORNA5797, osa-miRNA5797	_		8	miRBASE accession: MI0019810.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12950	MIR5798	miR5798, osa-miR5798, osa-MIR5798	MICRORNA5798	MICRORNA5798, osa-miRNA5798	_		7	miRBASE accession: MI0019811.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12951	MIR5799	miR5799, osa-miR5799, osa-MIR5799	MICRORNA5799	MICRORNA5799, osa-miRNA5799	_		6	miRBASE accession: MI0019813.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12952	MIR5800	miR5800, osa-miR5800, osa-MIR5800	MICRORNA5800	MICRORNA5800, osa-miRNA5800	_		11	miRBASE accession: MI0019814.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12953	MIR5801	miR5801, osa-miR5801, osa-MIR5801	MICRORNA5801	MICRORNA5801, osa-miRNA5801	_		12	miRBASE accession: MI0019815. predicted target(s): aspartic proteinase nepenthesin-2.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12954	MIR5802	miR5802, osa-miR5802, osa-MIR5802	MICRORNA5802	MICRORNA5802, osa-miRNA5802	_		1	miRBASE accession: MI0019816.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12955	MIR5803	miR5803, osa-miR5803, osa-MIR5803	MICRORNA5803	MICRORNA5803, osa-miRNA5803	_		4	miRBASE accession: MI0019819.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12956	MIR5804	miR5804, osa-miR5804, osa-MIR5804	MICRORNA5804	MICRORNA5804, osa-miRNA5804	_		4	miRBASE accession: MI0019820.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12957	MIR5805	miR5805, osa-miR5805, osa-MIR5805	MICRORNA5805	MICRORNA5805, osa-miRNA5805	_		12	miRBASE accession: MI0019821.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12958	MIR5806	miR5806, osa-miR5806, osa-MIR5806	MICRORNA5806	MICRORNA5806, osa-miRNA5806	_		6	miRBASE accession: MI0019822.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12959	MIR5807	miR5807, osa-miR5807, osa-MIR5807	MICRORNA5807	MICRORNA5807, osa-miRNA5807	_		8	miRBASE accession: MI0019824.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12960	MIR5808	miR5808, osa-miR5808, osa-MIR5808	MICRORNA5808	MICRORNA5808, osa-miRNA5808	_		9	miRBASE accession: MI0019825. predicted target(s): DC1 domain protein.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12961	MIR5809	miR5809, osa-miR5809, osa-MIR5809	MICRORNA5809	MICRORNA5809, osa-miRNA5809	_		4	miRBASE accession: MI0019826.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12962	MIR5810	miR5810, osa-miR5810, osa-MIR5810	MICRORNA5810	MICRORNA5810, osa-miRNA5810	_		12	miRBASE accession: MI0019827.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12963	MIR5811	miR5811, osa-miR5811, osa-MIR5811	MICRORNA5811	MICRORNA5811, osa-miRNA5811	_		3	miRBASE accession: MI0019828.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12964	MIR5812	miR5812, osa-miR5812, osa-MIR5812	MICRORNA5812	MICRORNA5812, osa-miRNA5812	_		1	miRBASE accession: MI0019829. predicted target(s): purple acid phosphatase.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12965	MIR5813	miR5813, osa-miR5813, osa-MIR5813	MICRORNA5813	MICRORNA5813, osa-miRNA5813	_		4	miRBASE accession: MI0019830.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12966	MIR5814	miR5814, osa-miR5814, osa-MIR5814	MICRORNA5814	MICRORNA5814, osa-miRNA5814	_		6	miRBASE accession: MI0019831.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12967	MIR5815	miR5815, osa-miR5815, osa-MIR5815	MICRORNA5815	MICRORNA5815, osa-miRNA5815	_		1	miRBASE accession: MI0019832. predicted target(s): HECT domain protein.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12968	MIR5816	miR5816, osa-miR5816, osa-MIR5816	MICRORNA5816	MICRORNA5816, osa-miRNA5816	_		9	miRBASE accession: MI0019833. predicted target(s): asp/Glu racemase.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12969	MIR5817	miR5817, osa-miR5817, osa-MIR5817	MICRORNA5817	MICRORNA5817, osa-miRNA5817	_		1	miRBASE accession: MI0019835.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12970	MIR5818	miR5818, osa-miR5818, osa-MIR5818	MICRORNA5818	MICRORNA5818, osa-miRNA5818	_		4	miRBASE accession: MI0019836. predicted target(s): eIF4E.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12971	MIR5820	miR5820, osa-miR5820, osa-MIR5820	MICRORNA5820	MICRORNA5820, osa-miRNA5820	_		10	miRBASE accession: MI0019838. predicted target(s): leucoanthocyanidin reductase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12972	MIR5821	miR5821, osa-miR5821, osa-MIR5821	MICRORNA5821	MICRORNA5821, osa-miRNA5821	_		12	miRBASE accession: MI0019839.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12973	MIR5822	miR5822, osa-miR5822, osa-MIR5822	MICRORNA5822	MICRORNA5822, osa-miRNA5822	_		11	miRBASE accession: MI0019840.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12974	MIR5823	miR5823, osa-miR5823, osa-MIR5823	MICRORNA5823	MICRORNA5823, osa-miRNA5823	_		11	miRBASE accession: MI0019841.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12975	MIR5824	miR5824, osa-miR5824, osa-MIR5824	MICRORNA5824	MICRORNA5824, osa-miRNA5824	_		1	miRBASE accession: MI0019842.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12976	MIR5825	miR5825, osa-miR5825, osa-MIR5825	MICRORNA5825	MICRORNA5825, osa-miRNA5825	_		5	miRBASE accession: MI0019844.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12977	MIR5826	miR5826, osa-miR5826, osa-MIR5826	MICRORNA5826	MICRORNA5826, osa-miRNA5826	_		11	miRBASE accession: MI0019845. predicted target(s): WRKY transcription factor.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12978	MIR5827	miR5827, osa-miR5827, osa-MIR5827	MICRORNA5827	MICRORNA5827, osa-miRNA5827	_		4	miRBASE accession: MI0019846. predicted target(s): 3Fe-4S ferredoxin.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12979	MIR5828	miR5828, osa-miR5828, osa-MIR5828	MICRORNA5828	MICRORNA5828, osa-miRNA5828	_		6	miRBASE accession: MI0019847.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12980	MIR5829	miR5829, osa-miR5829, osa-MIR5829	MICRORNA5829	MICRORNA5829, osa-miRNA5829	_		6	miRBASE accession: MI0019848.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12981	MIR5830	miR5830, osa-miR5830, osa-MIR5830	MICRORNA5830	MICRORNA5830, osa-miRNA5830	_		1	miRBASE accession: MI0019849. predicted target(s): HEAT repeat domain protein.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12982	MIR5831	miR5831, osa-miR5831, osa-MIR5831	MICRORNA5831	MICRORNA5831, osa-miRNA5831	_		5	miRBASE accession: MI0019850.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12983	MIR5832	miR5832, osa-miR5832, osa-MIR5832	MICRORNA5832	MICRORNA5832, osa-miRNA5832	_		12	miRBASE accession: MI0019852.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12984	MIR5833	miR5833, osa-miR5833, osa-MIR5833	MICRORNA5833	MICRORNA5833, osa-miRNA5833	_		5	miRBASE accession: MI0019853.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12985	MIR5834	miR5834, osa-miR5834, osa-MIR5834	MICRORNA5834	MICRORNA5834, osa-miRNA5834	_		6	miRBASE accession: MI0019854.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12986	MIR5835	miR5835, osa-miR5835, osa-MIR5835	MICRORNA5835	MICRORNA5835, osa-miRNA5835	_		6	miRBASE accession: MI0019855. predicted target(s): protein kinase receptor.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12987	MIR5836	miR5836, osa-miR5836, osa-MIR5836	MICRORNA5836	MICRORNA5836, osa-miRNA5836	_		6	miRBASE accession: MI0019857. predicted target(s): cytochrome P450.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12988	MIR5837	miR5837, osa-miR5837, osa-MIR5837, miR5837.1, miR5837.2	MICRORNA5837	MICRORNA5837, osa-miRNA5837	_		11	miRBASE accession: MI0019858. predicted target(s): phphatidyltransferase, ASC1-like protein.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12989	MIR812P	miR812p, osa-miR812p, osa-MIR812p	MICRORNA812P	MICRORNA812p, osa-miRNA812p	_		8	miRBASE accession: MI0019799. predicted target(s): ATP binding protein.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12990	MIR812Q	miR812q, osa-miR812q, osa-MIR812q	MICRORNA812Q	MICRORNA812q, osa-miRNA812q	_		10	miRBASE accession: MI0019800. target gene(s): CIPK10. predicted target(s): CBL interacting protein kinase. miR812q is specifically upregulated by cold stress in both leaf and panicle.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12991	MIR812R	miR812r, osa-miR812r, osa-MIR812r	MICRORNA812R	MICRORNA812r, osa-miRNA812r	_		11	miRBASE accession: MI0019807.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12992	MIR812S	miR812s, osa-miR812s, osa-MIR812s	MICRORNA812S	MICRORNA812s, osa-miRNA812s	_		3	miRBASE accession: MI0019812. predicted target(s): SPL11.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12993	MIR812T	miR812t, osa-miR812t, osa-MIR812t	MICRORNA812T	MICRORNA812t, osa-miRNA812t	_		6	miRBASE accession: MI0019817. predicted target(s): ATP binding protein.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12994	MIR812U	miR812u, osa-miR812u, osa-MIR812u	MICRORNA812U	MICRORNA812u, osa-miRNA812u	_		11	miRBASE accession: MI0019818. predicted target(s): ATP binding protein.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12995	MIR812V	miR812v, osa-miR812v, osa-MIR812v	MICRORNA812V	MICRORNA812v, osa-miRNA812v	_		5	miRBASE accession: MI0019823. predicted target(s): epoxide hydrolase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12996	MIR818F	miR818f, osa-miR818f, osa-MIR818f	MICRORNA818F	MICRORNA818f, osa-miRNA818f	_		8	miRBASE accession: MI0023432.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12997	MIR5143B	miR5143b, osa-miR5143b, osa-MIR5143b	MICRORNA5143B	MICRORNA5143b, osa-miRNA5143b	_		1	miRBASE accession: MI0019834. predicted target(s): phphoinitide 5-phphatase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12998	MIR1863C	miR1863c, osa-miR1863c, osa-MIR1863c	MICRORNA1863C	MICRORNA1863c, osa-miRNA1863c	_		12	miRBASE accession: MI0013044.LM381447	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12999	MIR2871B	miR2871b, osa-miR2871b, osa-MIR2871b	MICRORNA2871B	MICRORNA2871b, osa-miRNA2871b	_		4	miRBASE accession: MI0013036.LM381441	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13000	PIKG	Pikg, Pik-g	PYRICULARIA ORYZAE RESISTANCE KG	Pyricularia oryzae resistance-kg, Magnaporthe grisea resistance-kg, Blast resistance kg			11	Original line is GA20. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance					141.0	GO:0009620 - response to fungus		PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
13002	PII2	Pi i2, Pii2, Pii2(t)	PYRICULARIA ORYZAE RESISTANCE-I2	Pyricularia oryzae resistance-i2, Magnaporthe grisea resistance-I2, Blast resistance I2			9	Resistant to rice blast disease. Varieties 'Ishikari-shiroge' and 'Fujisaka 5' have this gene. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance			GR:0060615			GO:0009620 - response to fungus	TO:0000510 - penetrated to total root ratio, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
13003	MIR5819	miR5819, osa-miR5819, osa-MIR5819	MICRORNA5819	MICRORNA5819, osa-miRNA5819	_		1	miRBASE accession: MI0019837. predicted target(s): peptidase.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13004	PI26	Pi26(t), Pi26	PYRICULARIA ORYZAE RESISTANCE 26	Pyricularia oryzae resistance 26, Magnaporthe grisea resistance 26, Blast resistance 26			6	Map position (22.5-63.2 cM). Original line is Gumei 2 (Indica).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13005	PR5	OsPR5, Pir2, PR-5, PR5-1	PATHOGENESIS-RELATED GENE 5 	pathogenesis-related gene 5, Pathogenesis-related protein class 5 gene	PATHOGENESIS-RELATED PROTEIN 5 		12	X68197. P31110. thaumatin-like protein. a Pathogen-lnduced Thaumatin-Like Protein.	 Tolerance and resistance - Disease resistance	Os12g0628600	LOC_Os12g43430.1, LOC_Os12g43380.1				GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005576 - extracellular region, GO:0006950 - response to stress, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
13006	HMA1	OsHMA1, osHMA1	HEAVY METAL ATPASE 1	heavy metal ATPase 1, heavy metal P-Type ATPase 1	HEAVY METAL ATPASE 1		6		 Biochemical character	Os06g0690700	LOC_Os06g47550.4, LOC_Os06g47550.2, LOC_Os06g47550.1				GO:0009642 - response to light intensity, GO:0015434 - cadmium-transporting ATPase activity, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0015633 - zinc transporting ATPase activity, GO:0006878 - cellular copper ion homeostasis, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity, GO:0055069 - zinc ion homeostasis, GO:0009636 - response to toxin, GO:0009941 - chloroplast envelope		
13007	_	OsHMA4, HMA4	_	heavy metal ATPase 4	_				 Biochemical character								
13008	HMA6	OsHMA5, osHMA6, HMA5	HEAVY METAL ATPASE 6	heavy metal ATPase 5, heavy metal ATPase 6, heavy metal P-Type ATPase 6	HEAVY METAL ATPASE 6		2		 Biochemical character	Os02g0172600	LOC_Os02g07630.1				GO:0005507 - copper ion binding, GO:0016021 - integral to membrane, GO:0043682 - copper-transporting ATPase activity, GO:0005524 - ATP binding		
13009	HMA8	OsHMA6, osHMA8, HMA6	HEAVY METAL ATPASE 8	heavy metal ATPase 6, heavy metal ATPase 8, heavy metal P-Type ATPase 8	HEAVY METAL ATPASE 8		3		 Biochemical character	Os03g0178100	LOC_Os03g08070.3, LOC_Os03g08070.2, LOC_Os03g08070.1				GO:0046872 - metal ion binding, GO:0000166 - nucleotide binding		
13010	HMA4	OsHMA7, osHMA4, HMA7	HEAVY METAL ATPASE 4	heavy metal ATPase 7, heavy metal ATPase 4, heavy metal P-Type ATPase 4	HEAVY METAL ATPASE 4		2	OsHMA7 in Zhao et al. 2014.	 Biochemical character	Os02g0196600	LOC_Os02g10290.1				GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0016021 - integral to membrane, GO:0043682 - copper-transporting ATPase activity		
13011	HMA5	OsHMA8, osHMA5, HMA8	HEAVY METAL ATPASE 5	heavy metal ATPase 8, heavy metal ATPase 5, heavy metal P-Type ATPase 5	HEAVY METAL ATPASE 5		4	OsHMA8 in Zhao et al. 2014.	 Biochemical character	Os04g0556000	LOC_Os04g46940.1				GO:0005507 - copper ion binding, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0043682 - copper-transporting ATPase activity		
13012	RNS1	OsRNS1	RIBONUCLEASE 1	RNase 1	RIBONUCLEASE 1		7		 Biochemical character	Os07g0630400	LOC_Os07g43670.1				GO:0016036 - cellular response to phosphate starvation, GO:0009611 - response to wounding, GO:0007568 - aging, GO:0033897 - ribonuclease T2 activity, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0003723 - RNA binding, GO:0009718 - anthocyanin biosynthetic process, GO:0005886 - plasma membrane		
13013	RNS2	OsRNS2	RIBONUCLEASE 2	RNase 2	RIBONUCLEASE 2		1		 Biochemical character	Os01g0897200	LOC_Os01g67180.1				GO:0033897 - ribonuclease T2 activity, GO:0003723 - RNA binding		
13015	RNS3	OsRNS3	RIBONUCLEASE 3	RNase 3	RIBONUCLEASE 3		8		 Biochemical character	Os08g0434100	LOC_Os08g33710.1				GO:0016036 - cellular response to phosphate starvation, GO:0009718 - anthocyanin biosynthetic process, GO:0009611 - response to wounding, GO:0007568 - aging, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0005886 - plasma membrane, GO:0003723 - RNA binding, GO:0033897 - ribonuclease T2 activity		
13016	RNS4	OsRNS4, OsRRP, RNaseDIS	RIBONUCLEASE 4	RNase 4, RNase-related protein, drought-induced S-like RNase, RNase DIS, drought induced S-like RNase homologue	RIBONUCLEASE 4		9	AY056038, AF439449, AY061961, AU163522, AU163523, BE230627. LOC_Os09g36680.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0537700	LOC_Os09g36680.1				GO:0033897 - ribonuclease T2 activity, GO:0016036 - cellular response to phosphate starvation, GO:0003723 - RNA binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000158 - red light sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000130 - far red light sensitivity, TO:0000615 - abscisic acid sensitivity	
13017	RNS5	OsRNS5	RIBONUCLEASE 5	RNase 5	RIBONUCLEASE 5		9		 Biochemical character	Os09g0538000	LOC_Os09g36700.1				GO:0033897 - ribonuclease T2 activity, GO:0003723 - RNA binding		
13018	RNS6	OsRNS6	RIBONUCLEASE 6	RNase 6	RIBONUCLEASE 6		1		 Biochemical character	Os01g0897300	LOC_Os01g67190.1				GO:0003723 - RNA binding, GO:0033897 - ribonuclease T2 activity		
13019	PIZH	Pizh	PYRICULARIA ORYZAE RESISTANCE ZH	Pyricularia oryzae resistance-z, Magnaporthe grisea resistance-z, Blast resistance z, Pyricularia oryzae resistance-2, Magnaporthe grisea resistance-2, Blast resistance 2			8	Original line is Zhai-Ya-Quing8. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. Map position (53.2-84.8 cM). 	 Tolerance and resistance - Disease resistance			GR:0060628			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000522 - stomatal conductance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
13020	_	OsZIP9, ZIP9	_	zinc transporter 9, Zn transporter 9	_		5	Q0DHE3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0472400 	LOC_Os05g39540.2, LOC_Os05g39540.1				GO:0046686 - response to cadmium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
13021	_	OsZIP10, ZIP10	_	zinc transporter 10, Zn transporter 10	_		6	LOC_Os06g37010. Q5Z653. GO:0035434: copper ion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0566300 	LOC_Os06g37010.2, LOC_Os06g37010.1				GO:0009624 - response to nematode, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0005375 - copper ion transmembrane transporter activity, GO:0005381 - iron ion transmembrane transporter activity, GO:0010043 - response to zinc ion, GO:0016021 - integral to membrane, GO:0034755 - iron ion transmembrane transport		
13022	_	OsSERK3, OsSERL6, OsBI-SERK1, OsBAK1-3	_	somatic embryogenesis receptor-like kinase 3, somatic embryogenesis receptor kinase 3, SERK-like gene 6, bri1-associated receptor kinase 1 (BAK1) homologue 3, BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1			6	OsBI-SERK1 in Song et al. 2008. BAD37288. a brassinosteroid-response gene. LOC_Os06g12120.	 Biochemical character	Os06g0225300	LOC_Os06g12120.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0009742 - brassinosteroid mediated signaling		
13023	TMS10	OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1	THERMOSENSITIVE MALE STERILITY 10	thermosensitive male sterility10, thermosensitive male sterility 10, Thermo-Sensitive Genic Male Sterile 10, somatic embryogenesis receptor-like kinase 4, somatic embryogenesis receptor kinase 4, SERK-like gene 9, bri1-associated receptor kinase 1 (BAK1) homologue 5		tms10	2	LOC_Os02g18320. AK066118. BAD22198. OsSERK2 in Song et al. 2008.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0283800	LOC_Os02g18320.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048653 - anther development, GO:0048658 - tapetal layer development, GO:0009556 - microsporogenesis, GO:0009555 - pollen development, GO:0009266 - response to temperature stimulus	TO:0000421 - pollen fertility, TO:0000067 - genic male sterility-thermo sensitive	PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
13024	_	OsSERL1, OsBAK1-8	_	SERK-like gene 1, bri1-associated receptor kinase 1 (BAK1) homologue 8			11	LOC_Os11g39370.	 Biochemical character	Os11g0607200	LOC_Os11g39370.2, LOC_Os11g39370.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
13025	_	OsSERL2, SERL2, SERK1, OsBAK1-7, BAK1-7	_	SERK-like gene 2, Somatic Embryogenesis Protein Kinase 1, bri1-associated receptor kinase 1 (BAK1) homologue 7			6	AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). LOC_Os06g16330. a rice ortholog of Arabidopsis NIK1/NIK2. targeted by OS_AGO1_sRNA397 (Qin et al. 2017).	 Biochemical character	Os06g0274500	LOC_Os06g16330.1				GO:0016021 - integral to membrane, GO:0051607 - defense response to virus, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13026	_	OsSERL3	_	SERK-like gene 3			2		 Biochemical character	Os02g0728500	LOC_Os02g49600.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13027	_	OsSERL4, OsBAK1-9, Docs1	_	SERK-like gene 4, bri1-associated receptor kinase 1 (BAK1) homologue 9, defective in outer cell layer specification 1			2	LOC_Os02g14120. A leucine-rich repeat receptor-like kinase.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0236100	LOC_Os02g14120.1				GO:0010044 - response to aluminum ion, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048364 - root development, GO:0016021 - integral to membrane	TO:0000354 - aluminum sensitivity	PO:0007520 - root development stage 
13031	_	OsSERL8, OsBAK1-6, SERL8, BAK1-6, TMS10L	_	SERK-like gene 8, bri1-associated receptor kinase 1 (BAK1) homologue 6, TMS10-Like, Thermo-Sensitive Genic Male Sterile 10-like		tms10l, ms10l-1, ms10l-2	3	LOC_Os03g49620.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0703200	LOC_Os03g49620.8, LOC_Os03g49620.7, LOC_Os03g49620.5, LOC_Os03g49620.4, LOC_Os03g49620.3, LOC_Os03g49620.2				GO:0048653 - anther development, GO:0048658 - tapetal layer development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000067 - genic male sterility-thermo sensitive, TO:0000421 - pollen fertility	PO:0001004 - anther development stage 
13033	_	OsBiSERK1	_	BTH-induced SERK1, benzothiadiazole-induced SERK1				AY463361.	 Biochemical character						GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
13034	_	OsPCNA, PCNA	_	proliferating cell nuclear antigen, Proliferating-cell nuclear antigen, DNA polymerase delta auxiliary protein, cyclin			2	LOC_Os02g56130. X54046. J04538. P17070. D16056. KC609145-KC609157 (O. sativa and wild rice species, intron 3). accessory protein of DNA polymerases. OsPCNA  is likely to be involved in the Ku-independent alternative non-homologous end-joining pathway (A-NHEJ pathway). (Ishii et al. 2016)	 Tolerance and resistance - Stress tolerance,  Other	Os02g0805200	LOC_Os02g56130.1				GO:0006275 - regulation of DNA replication, GO:0043626 - PCNA complex, GO:0042276 - error-prone postreplication DNA repair, GO:0006974 - response to DNA damage stimulus, GO:0009411 - response to UV, GO:0042542 - response to hydrogen peroxide, GO:0010332 - response to gamma radiation, GO:0003677 - DNA binding, GO:0005730 - nucleolus, GO:0005737 - cytoplasm, GO:0006260 - DNA replication, GO:0030337 - DNA polymerase processivity factor activity, GO:0009314 - response to radiation, GO:0006303 - double-strand break repair via nonhomologous end joining	TO:0000160 - UV light sensitivity	
13035	SEND1	OsSEND-1, OsSEND1	SINGLE-STRAND DNA ENDONUCLEASE 1	single-strand DNA endonuclease-1	SINGLE-STRAND DNA ENDONUCLEASE 1	ossend1-1, ossend1-2	8	AB074260. Q8W5R1. GO:0090305: nucleic acid phosphodiester bond hydrolysis. Yen1/GEN1 ortholog in rice.	 Tolerance and resistance - Stress tolerance	Os08g0101600	LOC_Os08g01130.1				GO:0046872 - metal ion binding, GO:0006281 - DNA repair, GO:0009411 - response to UV, GO:0005634 - nucleus, GO:0004519 - endonuclease activity, GO:0003677 - DNA binding	TO:0000160 - UV light sensitivity	
13036	_	OsKCH1, KCH1, OsKCH, KCH, O12	_	Kinesin O12, Kinesin OsKCH1			12	Q0IMS9.		Os12g0547500	LOC_Os12g36100.2, LOC_Os12g36100.1				GO:0007097 - nuclear migration, GO:0031534 - minus-end directed microtubule sliding, GO:0008017 - microtubule binding, GO:0008569 - minus-end-directed microtubule motor activity, GO:0016887 - ATPase activity, GO:0003779 - actin binding, GO:0043621 - protein self-association, GO:0005737 - cytoplasm, GO:0015630 - microtubule cytoskeleton, GO:0005871 - kinesin complex, GO:0015629 - actin cytoskeleton, GO:0051647 - nucleus localization, GO:0007018 - microtubule-based movement, GO:0005875 - microtubule associated complex, GO:0005874 - microtubule, GO:0005524 - ATP binding, GO:0003777 - microtubule motor activity		
13037	POXA	poxA, prx126, prxRPA, RPA	PEROXIDASE A	Peroxidase A, class III peroxidase 126	PEROXIDASE A		10	D84400. BN000655. D14481.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0109600	LOC_Os10g02070.1				GO:0020037 - heme binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
13038	POXN	poxN, prx38, prxRPN, RPN, poxN/PRX38	PEROXIDASE N	Peroxidase N, class III peroxidase 38	PEROXIDASE N		3	D49551. BN000567. D14482.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0235000	LOC_Os03g13210.1				GO:0050832 - defense response to fungus, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0005634 - nucleus, GO:0004601 - peroxidase activity, GO:0005737 - cytoplasm, GO:0006952 - defense response	TO:0000179 - biotic stress trait, TO:0000074 - blast disease	
13039	TRKE	TRKe, Rke, NRKe, 9RKe	TEQING RECEPTOR KINASE E	receptor-kinase gene e in Teqing, receptor-kinase gene e in Nipponbare, receptor-kinase gene e in 93-11	TEQING RECEPTOR KINASE E		11	DQ355953. JN176870, JN176871.	 Biochemical character,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Stress tolerance						GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
13040	TRKF	TRKf	TEQING RECEPTOR KINASE F	receptor-kinase gene f in Teqing	TEQING RECEPTOR KINASE F		11	pseudogene. DQ355954. wild rice ortholog: OoRKf (O. officinalis).									
13041	TRKG	TRKg	TEQING RECEPTOR KINASE G	receptor-kinase gene g in Teqing	TEQING RECEPTOR KINASE G		11	pseudogene. DQ355955. wild rice ortholog: OmRKg (O. minuta).									
13042	TRKH	TRKh	TEQING RECEPTOR KINASE H	receptor-kinase gene h in Teqing	TEQING RECEPTOR KINASE H		11	pseudogene. DQ355955.									
13043	TRKI	TRKi	TEQING RECEPTOR KINASE I	receptor-kinase gene i in Teqing	TEQING RECEPTOR KINASE I		11	pseudogene. DQ355955.									
13044	TRKJ	TRKj	TEQING RECEPTOR KINASE J	receptor-kinase gene j in Teqing	TEQING RECEPTOR KINASE J		11	pseudogene. DQ355956.									
13045	PI39	Pi39(t), Pi39	PYRICULARIA ORYZAE RESISTANCE 39	Pyricularia grisea resistance 39, Magnaporthe grisea resistance 39, Blast resistance 39			4	Original line is Chubu 111 (Japonica). Map position (107.4-108.2 cM).	 Tolerance and resistance - Disease resistance,  Character as QTL - Grain quality						GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000510 - penetrated to total root ratio	
13046	PI27	Pi27, Pi27(t), Pi-27(t)	PYRICULARIA ORYZAE RESISTANCE 27	Pyricularia oryzae resistance-27(t), Magnaporthe grisea resistance 27, Blast resistance 27			1	Original line is Q14. Map position (28.4-38.3 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13047	PIGD1	Pi-GD-1(t), PiGD1, PiGD-1(t)	PYRICULARIA ORYZAE RESISTANCE GD1	Pyricularia oryzae resistance GD1			8	Original line is Sanhuangzhan 2 (Indica). The Pi-GD-1(t) gene is 11.3 cM from the anchor marker RG1034 (Liu et al. 2004).	 Tolerance and resistance - Disease resistance			GR:0060657			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000480 - nutrient sensitivity	
13049	PI56	Pi56, qBR9.1, Pi56(t)	PYRICULARIA ORYZAE RESISTANCE 56		NBR-LRR PROTEIN		9	Original line is Sanhuangzhan No2 (SHZ-2). Pi46(t) in Liu et al. 2009 was renamed Pi56(t) in Liu et al. 2013. LOC_Os09g16000	 Tolerance and resistance - Disease resistance	Os09g0328951	LOC_Os09g16000.1				GO:0006952 - defense response, GO:0009620 - response to fungus, GO:0043531 - ADP binding		
13050	PI25	Pi25(t), Pi-25(t), RMg62	PYRICULARIA ORYZAE RESISTANCE 25	Pyricularia oryzae resistance-25(t), Blast resistance 25, Blast resistance 25			1	Original line is Sanbangqishiluo.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13051	PI43	Pi43, Pi43(t), Pi-43(t)	PYRICULARIA ORYZAE RESISTANCE 43	Pyricularia oryzae resistance 43, Magnaporthe grisea resistance 43, Blast resistance 43			11	Original line is Zhe733 (Indica). Pi42 in Lee et al. 2009 (Plant & Animal Genomics XVII Conference) was renamed Pi43 in Lee et al. 2009 (Mol Breeding  2009 24 127-134).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13052	PI50	Pi50(t)	PYRICULARIA ORYZAE RESISTANCE 50	Pyricularia oryzae resistance 50, Magnaporthe grisea resistance 50, Blast resistance 50			6	Pi50(t) is one of the NBS-LRR genes in the Pi2/Pi9 cluster on chromosome 6.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13053	PI51	Pi51(t)	PYRICULARIA ORYZAE RESISTANCE 51	Pyricularia oryzae resistance 51, Magnaporthe grisea resistance 51, Blast resistance 51			12	Original line is Tianjingyeshengdao. Pi51(t) is mapped in the interval between RM5364 and RM27990 on chromosome 12.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13054	PI51	Pi51(t)	PYRICULARIA ORYZAE RESISTANCE 51	Pyricularia oryzae resistance 51, Magnaporthe grisea resistance 51, Blast resistance 51			6	Original line is D69. Pi51(t) was delimited to an interval of ~100.8 kb flanked by markers Ind306 and RM19818, where Pi2, Pi9, Piz, Piz-t, Pigm(t), and Pi40(t) reside.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13055	PID3	Pi-d3, Pid3, Pi25	PYRICULARIA ORYZAE RESISTANCE D3	Pyricularia oryzae resistance D3, Magnaporthe grisea resistance-D3, Blast resistance D3, Pyricularia oryzae resistance-d3			6	LOC_Os06g22460. FJ745364(Digu), FJ745365(ZYQ8), FJ745366(TP309), FJ745367(LTH), FJ745368(A4), FJ773285(93-11), FJ773286(Nipponbare). CK083629. HM448480, HM448481. Resistance genes Pi25 and Pid3, both encoding resistance against Magnaporthe oryzae, are allelic and vary in a single nucleotide (Chen et al., 2011). Pid3-A4: an Oryza rufipogon ortholog of Rice Blast Resistance Gene Pid3. KC008606 (Oryza rufipogon, promoter region of Pid3-A4).	 Tolerance and resistance - Disease resistance	Os06g0330100	LOC_Os06g22460.1	GR:0061186		63.2	GO:0009620 - response to fungus, GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000468 - leaf blast disease resistance	
13056	PI55-1	pi55-1, pi55(t), OsIRL4	PYRICULARIA ORYZAE RESISTANCE 55-1	Pyricularia oryzae resistance 55-1, Magnaporthe grisea resistance 55-1, Blast resistance 55-1, intracellular Ras-group-related LRR protein 4			8	LOC_Os08g40090.1 leucine-rich repeat containing protein. pi55-1 is a leucine-rich repeat-containing protein and one of the most promissing candidate genea for pi55(t). AK065422.	 Tolerance and resistance - Disease resistance	Os08g0511700	LOC_Os08g40090.1				GO:0009620 - response to fungus, GO:0005886 - plasma membrane		PO:0009005 - root 
13057	PI55-2	pi55-2, pi55(t)	PYRICULARIA ORYZAE RESISTANCE 55-2	Pyricularia oryzae resistance 55-2, Magnaporthe grisea resistance 55-2, Blast resistance 55-2			8	pi55-2 is a heavy-metal-associated domain-containing protein and one of the most promissing candidate genes for pi55(t).	 Tolerance and resistance - Disease resistance	Os08g0512200	LOC_Os08g40130.1				GO:0030001 - metal ion transport, GO:0009620 - response to fungus, GO:0046872 - metal ion binding		
13058	PIBH8	Pib-H8, PibH8	PYRICULARIA ORYZAE RESISTANCE  BH8	Pyricularia oryzae resistance from Lemont, Magnaporthe grisea resistance from Lemont, Magnaporthe grisea resistance-b-H8, Pib homologue on chromosome 8			8	AB013451.	 Tolerance and resistance - Disease resistance	Os08g0539700	LOC_Os08g42700.1				GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0009620 - response to fungus		
13059	PIQ6	Piq6(t)	PYRICULARIA ORYZAE RESISTANCE Q6	Pyricularia oryzae resistance q6, Magnaporthe grisea resistance q6, Blast resistance q6			6	Pi34 and Piq6(t) acted additively on resistance to rice blast but the effect of Piq6(t) was relatively small compared with Pi34. (Zenbayshi et al. 2007).	 Tolerance and resistance - Disease resistance			GR:0060663			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	
13060	PIZY	Pi-zy, Pi-zy(t)	PYRICULARIA ORYZAE RESISTANCE ZY	Magnaporthe grisea resistance zy, Blast resistance zy			11		 Tolerance and resistance - Disease resistance					58.7	GO:0009620 - response to fungus		
13061	PIR2-3	Pir2-3, Pir2-3(t)	PYRICULARIA ORYZAE RESISTANCE R2-3	Pyricularia oryzae resistance R2-3, Magnaporthe grisea resistance-R2-3, Blast resistance R2-3			2	Pir2-3(t) originated from IR64. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000488 - seed composition based quality trait	PO:0009025 - vascular leaf 
13062	PIR4	Pir4	PYRICULARIA ORYZAE RESISTANCE R4	Pyricularia oryzae resistance R4, Magnaporthe grisea resistance-R4, Blast resistance R4			2	The blast resistance gene Pir4 originated from O. rufipogon. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					110.9	GO:0009620 - response to fungus	TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
13063	PIR7	Pir7	PYRICULARIA ORYZAE RESISTANCE R7	Pyricularia oryzae resistance R7, Magnaporthe grisea resistance-R7, Blast resistance R7			2	The blast resistance gene Pir7 originated from IR64. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					122.8	GO:0009620 - response to fungus	TO:0000488 - seed composition based quality trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
13064	PIR9-2	Pir9-2, Pir9-2(t)	PYRICULARIA ORYZAE RESISTANCE R9-2	Pyricularia oryzae resistance R9-2, Magnaporthe grisea resistance-R9-2, Blast resistance R9-2			9	Pir9-2(t) originated from IR64. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					49.3	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
13065	PIR12-2	Pir12-2, Pir12-2(t)	PYRICULARIA ORYZAE RESISTANCE R12-2	Pyricularia oryzae resistance R12-2, Magnaporthe grisea resistance-R12-2, Blast resistance R12-2			12	Pir12-2(t) originated from IR64. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					21.9	GO:0009620 - response to fungus	TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
13066	PIRF2-1	Pirf2-1, Pirf2-1(t)	PYRICULARIA ORYZAE RESISTANCE RF2-1	Pyricularia oryzae resistance RF2-1, Magnaporthe grisea resistance-RF2-1, Blast resistance RF2-1			2	Pirf2-1(t) originated from Oryza rufipogon. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					172.3	GO:0009620 - response to fungus	TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
13067	HSP70CP2	OsHsp70CP2	HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 2	heat shock protein 70 chloroplast protein 2	HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 2		12		 Tolerance and resistance - Stress tolerance	Os12g0244100	LOC_Os12g14070.1				GO:0006457 - protein folding, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0048046 - apoplast, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0005739 - mitochondrion, GO:0005634 - nucleus, GO:0009579 - thylakoid, GO:0045036 - protein targeting to chloroplast, GO:0005524 - ATP binding		
13069	_	OsMSRPK1, Orysa;CDKG;1	_				2	Q6K5F8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0602100	LOC_Os02g39010.3, LOC_Os02g39010.2, LOC_Os02g39010.1				GO:0005524 - ATP binding, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0004693 - cyclin-dependent protein kinase activity		
13070	_	ONI3	_	ONION3, ONION 3		oni3, oni3-1, oni3-2, oni3-3, oni3-4, oni3-5, oni3-6, oni3-7	9	a homolog of Arabidopsis L1-specific gene HTH (HOTHEAD). an HTH1-related protein. long-chain fatty acid omega-alcohol dehydrogenase.	 Biochemical character,  Vegetative organ - Leaf	Os09g0363900	LOC_Os09g19930.1				GO:0042759 - long-chain fatty acid biosynthetic process, GO:0010430 - fatty acid omega-oxidation, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0048366 - leaf development, GO:0048367 - shoot development, GO:0050660 - FAD binding	TO:0000135 - leaf length, TO:0000654 - shoot development trait, TO:0000655 - leaf development trait	PO:0007033 - whole plant development stage , PO:0000037 - shoot apex , PO:0001050 - leaf development stage , PO:0007112 - 1 main shoot growth stage 
13071	PIR7B	Pir7b	PYRICULARIA ORYZAE RESISTANCE R7B	Pyricularia oryzae resistance R7b, Magnaporthe grisea resistance-R7b, Blast resistance R7b			1	Z34270, Z34271. Q0JG99.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0934800	LOC_Os01g70850.2, LOC_Os01g70850.1				GO:0004091 - carboxylesterase activity		
13072	PIR7A	Pir7a	PYRICULARIA ORYZAE RESISTANCE R7A	Pyricularia oryzae resistance R7a, Magnaporthe grisea resistance-R7a, Blast resistance R7a			1	Z34271. A2WYS7.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0934900	LOC_Os01g70860.1				GO:0004091 - carboxylesterase activity		
13073	PDR13	OsPDR13	PLEIOTROPIC DRUG RESISTANCE 13	pleiotropic drug resistance 13	PLEIOTROPIC DRUG RESISTANCE 13		6	AJ535042. Q8S628.	 Biochemical character	Os10g0205500	LOC_Os10g13830.1				GO:0016021 - integral to membrane, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0006810 - transport, GO:0005524 - ATP binding		
13074	PDR4	OsPDR4	PLEIOTROPIC DRUG RESISTANCE 4	pleiotropic drug resistance 4	PLEIOTROPIC DRUG RESISTANCE 4		2	AJ535051.	 Biochemical character	Os02g0318600	LOC_Os02g21350.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0016020 - membrane		
13075	PDR14.P	OsPDR14, PDR14, pdr14	PLEIOTROPIC DRUG RESISTANCE 14 PSEUDOGENE	pleiotropic drug resistance 14, PDR14 pseudogene				AJ535214.									
13076	_	PMP2	_	Peroxisomal Membrane Protein 2	_			a peroxisomal abc-type transporter homologous to AtPMP2. AJ535082.	 Biochemical character						GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
13077	MIR156J	miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p	MICRORNA156J	micro RNA 156j, microRNA156j, osa-miRNA156j			6	miRBASE accession: MI0000662. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. LM383047 LM379149	 Tolerance and resistance - Disease resistance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
13078	MIR1432	miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432	MICRORNA1432	MICRORNA1432, osa-miRNA1432	_		7	miRBASE accession: MI0006972. Predicted targets: Os03g0812400 (EF hand family protein), Os03g0812800, Os03g0813500. HM139004-HM139045 (O. sativa, O. rufipogon). LM380731. TO:0020106: Indole-3-acetic acid content.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0080050 - regulation of seed development, GO:0046686 - response to cadmium ion	TO:0000304 - seed thickness, TO:0000396 - grain yield, TO:0000592 - 1000-dehulled grain weight, TO:0000149 - seed width, TO:0000734 - grain length, TO:0002667 - abscisic acid content, TO:0002672 - auxin content	
13079	MIR396E	miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p	MICRORNA396E	MICRORNA396e, osa-miRNA396e	_		4	miRBASE accession: MI0001703.LM381739 LM379525	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
13080	MIR810B	miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2	MICRORNA810B	MICRORNA810b, osa-miRNA810b	_		11	miRBASE accession: MI0006986. LM380742, LM380743. Predicted targets: Os02g0132100 (PPR protein), LOC_Os01g65990.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13081	MIR2863A	miR2863a, osa-miR2863a, osa-MIR2863a	MICRORNA2863A	MICRORNA2863a, osa-miRNA2863a	_		3	miRBASE accession: MI0013025.LM381431	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13082	MIR2864	miR2864, osa-miR2864, osa-MIR2864, osa-miR2864.1, osa-miR2864.2	MICRORNA2864	MICRORNA2864, osa-miRNA2864	_		12	miRBASE accession: MI0013026. LM381432, LM381433.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13083	MIR2865	miR2865, osa-miR2865, osa-MIR2865	MICRORNA2865	MICRORNA2865, osa-miRNA2865	_		9	miRBASE accession: MI0013027.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13084	MIR2866	miR2866, osa-miR2866, osa-MIR2866	MICRORNA2866	MICRORNA2866, osa-miRNA2866	_		3	miRBASE accession: MI0013028.LM381434	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
13085	MIR2867	miR2867, osa-miR2867, osa-MIR2867osa-miR2867-3p osa-miR2867-5p	MICRORNA2867	MICRORNA2867, osa-miRNA2867	_		11	miRBASE accession: MI0013029.LM382874 LM381435	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13086	MIR2868	miR2868, osa-miR2868, osa-MIR2868	MICRORNA2868	MICRORNA2868, osa-miRNA2868	_		11	miRBASE accession: MI0013030.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13087	MIR2869	miR2869, osa-miR2869, osa-MIR2869	MICRORNA2869	MICRORNA2869, osa-miRNA2869	_		5	miRBASE accession: MI0013031.LM381436	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13088	MIR2870	miR2870, osa-miR2870, osa-MIR2870	MICRORNA2870	MICRORNA2870, osa-miRNA2870	_		1	miRBASE accession: MI0013032.LM381437	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13089	MIR2863B	miR2863b, osa-miR2863b, osa-MIR2863b	MICRORNA2863B	MICRORNA2863b, osa-miRNA2863b	_		2	miRBASE accession: MI0013033.LM381438	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
13090	MIR2905	miR2905, osa-miR2905, osa-MIR2905	MICRORNA2905	MICRORNA2905, osa-miRNA2905	_		3	miRBASE accession: MI0013034.LM381439	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13091	MIR2871A	miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p	MICRORNA2871A	MICRORNA2871a, osa-miRNA2871a	_		5	miRBASE accession: MI0013035.LM381440 LM382875	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13092	MIR2872	miR2872, osa-miR2872, osa-MIR2872	MICRORNA2872	MICRORNA2872, osa-miRNA2872	_		11	miRBASE accession: MI0013037.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
13093	MIR2873	miR2873, osa-miR2873, osa-MIR2873, osa-MIR2873a	MICRORNA2873	MICRORNA2873, osa-miRNA2873	_		11	miRBASE accession: MI0013038.LM381442	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13094	MIR2874	miR2874, osa-miR2874, osa-MIR2874	MICRORNA2874	MICRORNA2874, osa-miRNA2874	_		8	miRBASE accession: MI0013039.LM381443	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13095	MIR2875	miR2875, osa-miR2875, osa-MIR2875	MICRORNA2875	MICRORNA2875, osa-miRNA2875	_		8	miRBASE accession: MI0013040.LM381444	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13096	MIR2876	miR2876, osa-miR2876, osa-MIR2876, osa-miR2876.1, osa-miR2876.2	MICRORNA2876	MICRORNA2876, osa-miRNA2876	_		6	miRBASE accession: MI0013041.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13097	MIR2877	miR2877, osa-miR2877, osa-MIR2877	MICRORNA2877	MICRORNA2877, osa-miRNA2877	_		4	miRBASE accession: MI0013042.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13098	MIR2878	miR2878, osa-miR2878, osa-MIR2878, osa-miR2878-5p, osa-miR2878-3posa-miR2878-3p osa-miR2878-5p	MICRORNA2878	MICRORNA2878, osa-miRNA2878	_		8	miRBASE accession: MI0013043.LM381446 LM381445	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13099	MIR2879	miR2879, osa-miR2879, osa-MIR2879	MICRORNA2879	MICRORNA2879, osa-miRNA2879	_		2	miRBASE accession: MI0013045.LM381448	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13100	MIR2880	miR2880, osa-miR2880, osa-MIR2880	MICRORNA2880	MICRORNA2880, osa-miRNA2880	_		3	miRBASE accession: MI0013046.LM381449	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
13101	MIR396G	miR396g, osa-miR396g, osa-MIR396g	MICRORNA396G	MICRORNA396g, osa-miRNA396g	_		6	miRBASE accession: MI0013047.LM381450	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
13102	MIR396H	miR396h, osa-miR396h, osa-MIR396h	MICRORNA396H	MICRORNA396h, osa-miRNA396h	_		2	miRBASE accession: MI0013048.LM381451	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
13103	MIR1863B	miR1863b, osa-miR1863b, osa-MIR1863b, osa-miR1863b.2, MIR1863b.2-3p	MICRORNA1863B	MICRORNA1863b, osa-miRNA1863b	_		12	miRBASE accession: MI0013050. LM382876.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13104	MIR395X	miR395x, osa-miR395x, osa-MIR395x	MICRORNA395X	MICRORNA395x, osa-miRNA395x	_		4	miRBASE accession: MI0013350.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13105	MIR395Y	miR395y, osa-miR395y, osa-MIR395y	MICRORNA395Y	MICRORNA395y, osa-miRNA395y	_		8	miRBASE accession: MI0013351.LM381476	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13106	MIR812M	miR812m, osa-miR812m, osa-MIR812m	MICRORNA812M	MICRORNA812m, osa-miRNA812m	_		8	miRBASE accession: MI0017247.LM382516	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13107	MIR812N	miR812n, osa-miR812n, osa-MIR812nosa-miR812n-3p osa-miR812n-5p	MICRORNA812N	MICRORNA812n, osa-miRNA812n	_		8	miRBASE accession: MI0017254.LM382526 LM382525	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13108	MIR1862G	miR1862g, osa-miR1862g, osa-MIR1862g	MICRORNA1862G	MICRORNA1862g, osa-miRNA1862g	_		4	miRBASE accession: MI0017249.LM382518	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13109	MIR3981	miR3981, osa-miR3981, osa-MIR3981osa-miR3981-3p osa-miR3981-5p	MICRORNA3981	MICRORNA3981, osa-miRNA3981	_		5	miRBASE accession: MI0017256. miR3981 was found located in the last exon of the AK106348 mRNA encoding a putative glyoxalase. And miR3981-5p and miR3981-3p are both predicted to target the AK106348 mRNA.LM382530 LM382529	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13110	MIR2873B	miR2873b, osa-miR2873b, osa-MIR2873b	MICRORNA2873B	MICRORNA2873b, osa-miRNA2873b	_		2	miRBASE accession: MI0017257.LM382531	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13111	MIR3982	miR3982, osa-miR3982, osa-MIR3982osa-miR3982-3p osa-miR3982-5p	MICRORNA3982	MICRORNA3982, osa-miRNA3982	_		11	miRBASE accession: MI0017258.LM382533 LM382532	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13112	MIR5071	miR5071, osa-miR5071, osa-MIR5071	MICRORNA5071	MICRORNA5071, osa-miRNA5071	_		8	miRBASE accession: MI0017942.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13113	MIR5072	miR5072, osa-miR5072, osa-MIR5072	MICRORNA5072	MICRORNA5072, osa-miRNA5072	_		6	miRBASE accession: MI0017943.LM382697	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13114	MIR5073	miR5073, osa-miR5073, osa-MIR5073	MICRORNA5073	MICRORNA5073, osa-miRNA5073	_		8	miRBASE accession: MI0017946.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13115	MIR5074	miR5074, osa-miR5074, osa-MIR5074	MICRORNA5074	MICRORNA5074, osa-miRNA5074	_		12	miRBASE accession: MI0017950.LM382698	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13116	MIR5075	miR5075, osa-miR5075, osa-MIR5075	MICRORNA5075	MICRORNA5075, osa-miRNA5075	_		11	miRBASE accession: MI0017952.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13117	MIR5076	miR5076, osa-miR5076, osa-MIR5076	MICRORNA5076	MICRORNA5076, osa-miRNA5076	_		1	miRBASE accession: MI0017955.LM382699	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13118	MIR5077	miR5077, osa-miR5077, osa-MIR5077	MICRORNA5077	MICRORNA5077, osa-miRNA5077	_		3	miRBASE accession: MI0017965.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
13119	MIR5078	miR5078, osa-miR5078, osa-MIR5078	MICRORNA5078	MICRORNA5078, osa-miRNA5078	_		5	miRBASE accession: MI0017966.LM382700	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
13120	MIR5079	miR5079, osa-miR5079, osa-MIR5079, osa-MIR5079a	MICRORNA5079	MICRORNA5079, osa-miRNA5079	_		10	miRBASE accession: MI0017969.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13121	MIR5080	miR5080, osa-miR5080, osa-MIR5080	MICRORNA5080	MICRORNA5080, osa-miRNA5080	_		10	miRBASE accession: MI0017970.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13122	MIR5081	miR5081, osa-miR5081, osa-MIR5081	MICRORNA5081	MICRORNA5081, osa-miRNA5081	_		7	miRBASE accession: MI0017972.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13123	MIR5082	miR5082, osa-miR5082, osa-MIR5082	MICRORNA5082	MICRORNA5082, osa-miRNA5082	_		11	miRBASE accession: MI0017973.LM382701	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13124	MIR5083	miR5083, osa-miR5083, osa-MIR5083	MICRORNA5083	MICRORNA5083, osa-miRNA5083	_		1	miRBASE accession: MI0017974.LM382702	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13125	MIR5144	miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p	MICRORNA5144	MICRORNA5144, osa-miRNA5144, MicroRNA5144-3p	_		1	miRBASE accession: MI0018056. LM382889, LM382888.	 Seed - Physiological traits,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other						GO:0016442 - RNA-induced silencing complex, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0055122 - response to very low light intensity stimulus, GO:0046689 - response to mercury ion, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex	TO:0000104 - floury endosperm, TO:0000266 - chalky endosperm, TO:0000621 - inflorescence development trait, TO:0000382 - 1000-seed weight, TO:0006001 - salt tolerance, TO:0000460 - light intensity sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000653 - seed development trait	PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
13126	MIR5145	miR5145, osa-miR5145, osa-MIR5145, MIR5145-5p	MICRORNA5145	MICRORNA5145, osa-miRNA5145	_		1	miRBASE accession: MI0018057.LM382890	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13127	MIR5146	miR5146, osa-miR5146, osa-MIR5146, MIR5146-3p	MICRORNA5146	MICRORNA5146, osa-miRNA5146	_		1	miRBASE accession: MI0018058.LM382891	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13128	MIR5148A	miR5148a, osa-miR5148a, osa-MIR5148a, MIR5148a-3p	MICRORNA5148A	MICRORNA5148a, osa-miRNA5148a	_		3	miRBASE accession: MI0018061.LM382894	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13129	MIR5148B	miR5148b, osa-miR5148b, osa-MIR5148b, MIR5148b-3p	MICRORNA5148B	MICRORNA5148b, osa-miRNA5148b	_		6	miRBASE accession: MI0018062.LM382895	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13130	MIR5148C	miR5148c, osa-miR5148c, osa-MIR5148c, MIR5148c-3p	MICRORNA5148C	MICRORNA5148c, osa-miRNA5148c	_		11	miRBASE accession: MI0018063.LM382896	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13131	MIR5149	miR5149, osa-miR5149, osa-MIR5149, MIR5149-3p	MICRORNA5149	MICRORNA5149, osa-miRNA5149	_		3	miRBASE accession: MI0018064.LM382897	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13132	MIR5151	miR5151, osa-miR5151, osa-MIR5151, MIR5151-5p	MICRORNA5151	MICRORNA5151, osa-miRNA5151	_		5	miRBASE accession: MI0018066.LM382900	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13133	MIR5153	miR5153, osa-miR5153, osa-MIR5153, MIR5153-3p	MICRORNA5153	MICRORNA5153, osa-miRNA5153	_		5	miRBASE accession: MI0018068.LM382901	 Tolerance and resistance - Disease resistance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
13134	MIR5154	miR5154, osa-miR5154, osa-MIR5154, MIR5154-3p	MICRORNA5154	MICRORNA5154, osa-miRNA5154	_		6	miRBASE accession: MI0018069.LM382902	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13135	MIR5155	miR5155, osa-miR5155, osa-MIR5155, MIR5155-5p	MICRORNA5155	MICRORNA5155, osa-miRNA5155	_		8	miRBASE accession: MI0018070.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13136	MIR5156	miR5156, osa-miR5156, osa-MIR5156, MIR5156-5p	MICRORNA5156	MICRORNA5156, osa-miRNA5156	_		8	miRBASE accession: MI0018071.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
13137	MIR5157A	miR5157a, osa-miR5157a, osa-MIR5157a, MIR5157a-5p, MIR5157a-3p	MICRORNA5157A	MICRORNA5157a, osa-miRNA5157a	_		8	miRBASE accession: MI0018072.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13138	MIR5157B	miR5157b, osa-miR5157b, osa-MIR5157b, MIR5157b-5p, MIR5157b-3p	MICRORNA5157B	MICRORNA5157b, osa-miRNA5157b	_		8	miRBASE accession: MI0018073.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13139	MIR5158	miR5158, osa-miR5158, osa-MIR5158, MIR5158-3p	MICRORNA5158	MICRORNA5158, osa-miRNA5158	_		8	miRBASE accession: MI0018074.LM382903	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
13140	MIR5160	miR5160, osa-miR5160, osa-MIR5160, MIR5160-3p	MICRORNA5160	MICRORNA5160, osa-miRNA5160	_		12	miRBASE accession: MI0018076.LM382905	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13141	MIR5161	miR5161, osa-miR5161, osa-MIR5161, MIR5161-3p	MICRORNA5161	MICRORNA5161, osa-miRNA5161	_		12	miRBASE accession: MI0018077.LM382906	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13142	MIR5162	miR5162, osa-miR5162, osa-MIR5162, MIR5162-5p	MICRORNA5162	MICRORNA5162, osa-miRNA5162	_		12	miRBASE accession: MI0018078.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13143	MIR5337	miR5337, osa-miR5337, osa-MIR5337, osa-MIR5337a	MICRORNA5337	MICRORNA5337, osa-miRNA5337	_		4	miRBASE accession: MI0018519.LM382914	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13144	MIR5338	miR5338, osa-miR5338, osa-MIR5338	MICRORNA5338	MICRORNA5338, osa-miRNA5338	_		5	miRBASE accession: MI0018520.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13145	MIR5339	miR5339, osa-miR5339, osa-MIR5339	MICRORNA5339	MICRORNA5339, osa-miRNA5339	_		6	miRBASE accession: MI0018521.LM382915	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
13146	MIR5340	miR5340, osa-miR5340, osa-MIR5340	MICRORNA5340	MICRORNA5340, osa-miRNA5340	_		2	miRBASE accession: MI0018522.LM382916	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13148	_	OsIDD10	_	indeterminate domain 10	_	idd10	4			Os04g0566400	LOC_Os04g47860.8, LOC_Os04g47860.7, LOC_Os04g47860.6, LOC_Os04g47860.5, LOC_Os04g47860.4, LOC_Os04g47860.3, LOC_Os04g47860.2, LOC_Os04g47860.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13149	_	OsIDD1, IDD1	_	indeterminate domain 1	_		3		 Reproductive organ - Heading date	Os03g0197800	LOC_Os03g10140.1				GO:0003676 - nucleic acid binding, GO:0048573 - photoperiodism, flowering, GO:0008270 - zinc ion binding	TO:0000137 - days to heading, TO:0002616 - flowering time	
13150	_	OsIDD2, IDD2	_	indeterminate domain 2	_	osidd2	1	LOC_Os01g09850. GO:2000652: regulation of secondary cell wall biogenesis.	 Vegetative organ - Leaf,  Vegetative organ - Culm	Os01g0195000/Os01g0195066					GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding	TO:0000207 - plant height, TO:0000731 - lignin content	
13151	_	OsIDD3	_	indeterminate domain 3	_		9			Os09g0555700	LOC_Os09g38340.3, LOC_Os09g38340.2, LOC_Os09g38340.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
13152	_	OsIDD4	_	indeterminate domain 4	_		2	LOC_Os02g45050 (not found in MSU Rice Genome Annotation Project Release 7 data).									
13153	_	OsIDD5	_	indeterminate domain 5	_		7			Os07g0581400/Os07g0581366					GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13154	_	OsIDD6, IDD6	_	indeterminate domain 6	_		8		 Reproductive organ - Heading date	Os08g0554400	LOC_Os08g44050.4, LOC_Os08g44050.3, LOC_Os08g44050.2, LOC_Os08g44050.1				GO:0048573 - photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding	TO:0002616 - flowering time, TO:0000137 - days to heading	
13155	_	OsIDD7	_	indeterminate domain 7	_		2			Os02g0518500	LOC_Os02g31890.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13156	_	OsIDD8	_	indeterminate domain 8	_		1			Os01g0242200	LOC_Os01g14010.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13157	_	OsIDD9	_	indeterminate domain 9	_		1			Os01g0935000	LOC_Os01g70870.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13158	_	OsIDD11	_	indeterminate domain 11	_		1			Os01g0572300	LOC_Os01g39110.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13159	_	OsIDD12	_	indeterminate domain 12	_		8			Os08g0467100	LOC_Os08g36390.1						
13160	_	OsIDD13	_	indeterminate domain 13	_		9			Os09g0449400	LOC_Os09g27650.2, LOC_Os09g27650.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
13161	_	OsIDD14, LPA1	_	indeterminate domain 14, Loose Plant Architecture1	_	lpa1	3	the functional ortholog of the AtIDD15/SHOOT GRAVITROPISM5 (SGR5) gene. JQ681528. 	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Other	Os03g0237250	LOC_Os03g13400.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0046872 - metal ion binding	TO:0000567 - tiller angle	
13162	LAP6	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6	LESS ADHESIVE POLLEN 6	polyketide synthase 1, polyketide synthase 21, stilbene synthase		Ospks1, oslap6	10	D50576. FJ957881 (promoter sequence). OsPKS21 in Hu et al. 2017. an orthologue of Arabidopsis PKSA/LAP6. 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os10g0484800	LOC_Os10g34360.1				GO:0009058 - biosynthetic process, GO:0010584 - pollen exine formation, GO:0010208 - pollen wall assembly, GO:0080110 - sporopollenin biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0005783 - endoplasmic reticulum	TO:0000437 - male sterility	PO:0009046 - flower , PO:0025313 - tapetum , PO:0009051 - spikelet , PO:0009066 - anther 
13163	_	OsTKPR1, OsDFR2, OS-DFR2, OsDFR2A	_	tetraketide aplha-pyrone reductase 1, Dihydroflavonol-4-reductase 2		Ostkpr1	9	AF134807.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os09g0493500	LOC_Os09g32025.1, LOC_Os09g32020.1				GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0010208 - pollen wall assembly, GO:0003824 - catalytic activity, GO:0080110 - sporopollenin biosynthetic process	TO:0000437 - male sterility, TO:0000723 - microsporocyte development trait	
13164	_	YY1, OsLTPc2, OsLtpIII.2, LTP45	_	type C non-specific lipid transfer protein 2, non-specific lipid transfer protein c2, lipid transfer protein c2, LIPID TRANSFER PROTEIN45			9	D50575. O23810. BAA23617. LOC_Os09g35700.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0525500	LOC_Os09g35700.1				GO:0006649 - phospholipid transfer to membrane, GO:0048653 - anther development, GO:0005576 - extracellular region, GO:0005548 - phospholipid transporter activity		
13165	_	OsPME1	_	pectin methylesterase 1	_		1		 Biochemical character	Os01g0254300	LOC_Os01g15039.1				GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity		
13166	PME2	OsPME2	PECTIN METHYLESTERASE 2	pectin methylesterase 2	PECTIN METHYLESTERASE 2		1		 Biochemical character	Os01g0311800	LOC_Os01g20980.1				GO:0030599 - pectinesterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity		
13167	PME3	OsPME3	PECTIN METHYLESTERASE 3	pectin methylesterase 3	PECTIN METHYLESTERASE 3		1		 Biochemical character	Os01g0312500	LOC_Os01g21034.3, LOC_Os01g21034.2, LOC_Os01g21034.1				GO:0005886 - plasma membrane, GO:0009624 - response to nematode, GO:0048046 - apoplast, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity, GO:0004857 - enzyme inhibitor activity, GO:0005737 - cytoplasm, GO:0009505 - plant-type cell wall		
13168	PME4	OsPME4	PECTIN METHYLESTERASE 4	pectin methylesterase 4	PECTIN METHYLESTERASE 4		1		 Biochemical character	Os01g0634600	LOC_Os01g44340.1				GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall		
13169	PME5	OsPME5	PECTIN METHYLESTERASE 5	pectin methylesterase 5	PECTIN METHYLESTERASE 5		1		 Biochemical character	Os01g0743200	LOC_Os01g53990.2, LOC_Os01g53990.1				GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity		
13170	PME6	OsPME6, OsPME1	PECTIN METHYLESTERASE 6	pectin methylesterase 6	PECTIN METHYLESTERASE 6		1	LOC_Os01g57854. OsPME1 in Fang et al. 2016, Leng et al. 2017.	 Biochemical character,  Vegetative organ - Leaf	Os01g0788400	LOC_Os01g57854.1				GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity, GO:0045488 - pectin metabolic process, GO:0042545 - cell wall modification, GO:0004857 - enzyme inhibitor activity, GO:0010150 - leaf senescence, GO:0015996 - chlorophyll catabolic process, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0030599 - pectinesterase activity, GO:0046169 - methanol biosynthetic process	TO:0000249 - leaf senescence, TO:0002668 - jasmonic acid content	
13171	PME7	OsPME7	PECTIN METHYLESTERASE 7	pectin methylesterase 7	PECTIN METHYLESTERASE 7		1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0880300	LOC_Os01g65790.1				GO:0050832 - defense response to fungus, GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity	TO:0000074 - blast disease	
13172	PME8	OsPME8	PECTIN METHYLESTERASE 8	pectin methylesterase 8	PECTIN METHYLESTERASE 8		2		 Biochemical character,  Reproductive organ - panicle	Os02g0288100	LOC_Os02g18650.1				GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity, GO:0010229 - inflorescence development, GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
13173	PME9	OsPME9	PECTIN METHYLESTERASE 9	pectin methylesterase 9	PECTIN METHYLESTERASE 9		2		 Biochemical character	Os02g0783000	LOC_Os02g54190.1				GO:0005618 - cell wall, GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0004857 - enzyme inhibitor activity		
13174	PME10	OsPME10	PECTIN METHYLESTERASE 10	pectin methylesterase 10	PECTIN METHYLESTERASE 10		3		 Biochemical character	Os03g0300500	LOC_Os03g18860.1				GO:0045330 - aspartyl esterase activity, GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity		
13175	PME1	OsPME11, OsPME1	PECTIN METHYLESTERASE 1	pectin methylesterase 11, Pectin Methyl Esterase 1	PECTIN METHYLESTERASE 1		3	AY343494. LOC_Os03g19610. AY343494. LOC_Os03g19610. OsPME1 in Kanneganti and Gupta (2009). OsPME11 in Yang et al. (2012).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0309400	LOC_Os03g19610.1				GO:0045330 - aspartyl esterase activity, GO:0008152 - metabolic process, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0005618 - cell wall		
13176	PME12	OsPME12	PECTIN METHYLESTERASE 12	pectin methylesterase 12	PECTIN METHYLESTERASE 12		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0399000	LOC_Os03g28090.1				GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity		
13177	PME13	OsPME13	PECTIN METHYLESTERASE 13	pectin methylesterase 13	PECTIN METHYLESTERASE 13		4		 Biochemical character	Os04g0438400	LOC_Os04g35770.1				GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity		
13178	PME14	OsPME14	PECTIN METHYLESTERASE 14	pectin methylesterase 14	PECTIN METHYLESTERASE 14		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0458900	LOC_Os04g38560.1				GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity, GO:0045330 - aspartyl esterase activity		
13179	PME15	OsPME15	PECTIN METHYLESTERASE 15	pectin methylesterase 15	PECTIN METHYLESTERASE 15		4		 Biochemical character	Os04g0553500	LOC_Os04g46740.2, LOC_Os04g46740.1				GO:0030599 - pectinesterase activity, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0005618 - cell wall		
13180	PME16	OsPME16	PECTIN METHYLESTERASE 16	pectin methylesterase 16	PECTIN METHYLESTERASE 16		4		 Biochemical character	Os04g0641200	LOC_Os04g54850.1				GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0045330 - aspartyl esterase activity, GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification		
13181	PME17	OsPME17	PECTIN METHYLESTERASE 17	pectin methylesterase 17	PECTIN METHYLESTERASE 17		5		 Biochemical character	Os05g0361500	LOC_Os05g29790.1				GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity		
13182	PME18	OsPME18	PECTIN METHYLESTERASE 18	pectin methylesterase 18	PECTIN METHYLESTERASE 18		5		 Biochemical character	Os05g0521600	LOC_Os05g44600.1				GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity		
13183	PME19	OsPME19	PECTIN METHYLESTERASE 19	pectin methylesterase 19	PECTIN METHYLESTERASE 19		6		 Biochemical character	Os06g0193200	LOC_Os06g09340.1				GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity		
13184	PME20	OsPME20, OsEnS-109	PECTIN METHYLESTERASE 20	pectin methylesterase 20, endosperm-specific gene 109	PECTIN METHYLESTERASE 20		7	LOC_Os07g41650.	 Biochemical character	Os07g0607400	LOC_Os07g41650.2, LOC_Os07g41650.1				GO:0045490 - pectin catabolic process, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity		
13185	PME21	OsPME21	PECTIN METHYLESTERASE 21	pectin methylesterase 21	PECTIN METHYLESTERASE 21		7		 Biochemical character	Os07g0655600	LOC_Os07g46190.1				GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification		
13186	PME22	OsPME22	PECTIN METHYLESTERASE 22	pectin methylesterase 22	PECTIN METHYLESTERASE 22		7		 Biochemical character	Os07g0675100	LOC_Os07g47830.1				GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0005886 - plasma membrane, GO:0004857 - enzyme inhibitor activity, GO:0005737 - cytoplasm, GO:0048046 - apoplast, GO:0045330 - aspartyl esterase activity, GO:0009624 - response to nematode, GO:0009505 - plant-type cell wall, GO:0043086 - negative regulation of catalytic activity		
13187	PME23	OsPME23	PECTIN METHYLESTERASE 23	pectin methylesterase 23	PECTIN METHYLESTERASE 23		7		 Biochemical character	Os07g0691100	LOC_Os07g49100.1				GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0043086 - negative regulation of catalytic activity		
13188	PME24	OsPME24	PECTIN METHYLESTERASE 24	pectin methylesterase 24	PECTIN METHYLESTERASE 24		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0220400	LOC_Os08g12410.1				GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall		
13189	PME25	OsPME25	PECTIN METHYLESTERASE 25	pectin methylesterase 25	PECTIN METHYLESTERASE 25		8		 Biochemical character	Os08g0450100	LOC_Os08g34900.1				GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity		
13190	PME26	OsPME26	PECTIN METHYLESTERASE 26	pectin methylesterase 26	PECTIN METHYLESTERASE 26		8		 Biochemical character	Os08g0450200	LOC_Os08g34910.1				GO:0042545 - cell wall modification, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity, GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0030599 - pectinesterase activity		
13191	PME27	OsPME27	PECTIN METHYLESTERASE 27	pectin methylesterase 27	PECTIN METHYLESTERASE 27		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0433700	LOC_Os09g26360.1				GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity		
13192	PME28	OsPME28	PECTIN METHYLESTERASE 28	pectin methylesterase 28	PECTIN METHYLESTERASE 28		9		 Biochemical character	Os09g0571100	LOC_Os09g39760.1				GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification		
13193	PME29	OsPME29	PECTIN METHYLESTERASE 29	pectin methylesterase 29	PECTIN METHYLESTERASE 29		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0407000	LOC_Os10g26680.2, LOC_Os10g26680.1				GO:0030599 - pectinesterase activity, GO:0045488 - pectin metabolic process, GO:0005618 - cell wall, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification		
13194	PME30	OsPME30	PECTIN METHYLESTERASE 30	pectin methylesterase 30	PECTIN METHYLESTERASE 30		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0172100	LOC_Os11g07090.1				GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity, GO:0042545 - cell wall modification		
13195	PME31	OsPME31	PECTIN METHYLESTERASE 31	pectin methylesterase 31	PECTIN METHYLESTERASE 31		11		 Biochemical character	Os11g0192400	LOC_Os11g08750.1				GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification		
13196	PME32	OsPME32, OsSTA270	PECTIN METHYLESTERASE 32	pectin methylesterase 32	PECTIN METHYLESTERASE 32		11	LOC_Os11g43830. a mature anther-preferentially expressed gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0659600	LOC_Os11g43830.1				GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0045330 - aspartyl esterase activity		PO:0009066 - anther 
13197	PME33	OsPME33	PECTIN METHYLESTERASE 33	pectin methylesterase 33	PECTIN METHYLESTERASE 33		11		 Biochemical character	Os11g0683700	LOC_Os11g45720.1				GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity		
13198	PME34	OsPME34	PECTIN METHYLESTERASE 34	pectin methylesterase 34	PECTIN METHYLESTERASE 34		11		 Biochemical character	Os11g0683800	LOC_Os11g45730.1				GO:0045330 - aspartyl esterase activity, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0005618 - cell wall		
13199	PME35	OsPME35	PECTIN METHYLESTERASE 35	pectin methylesterase 35	PECTIN METHYLESTERASE 35		12		 Biochemical character	Os12g0563700	LOC_Os12g37660.1				GO:0042545 - cell wall modification, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0045330 - aspartyl esterase activity		
13200	_	ORK1, OsRLCK246, RLCK246	_	Oryza sativa Receptor-like Kinase1, Receptor-like Kinase 1, Receptor-like Cytoplasmic Kinase 246			8	AB188248. LOC_Os08g07890.	 Biochemical character	Os08g0176200	LOC_Os08g07890.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13201	MIR583C	miR583c, osa-miR583c, osa-MIR583c	MICRORNA583C	MICRORNA583c, osa-miRNA583c	_		10		 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13202	_	OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2	_	SUMO-conjugating enzyme 1, Ubiquitin-conjugating enzyme 1, E2 SUMO conjugation enzyme 1b, SUMO conjugation enzyme 1b, E2 protein SCE1b			10	OsSCE1b in Rosa et al. 2018.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os10g0536000	LOC_Os10g39120.2, LOC_Os10g39120.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0019725 - cellular homeostasis, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0016925 - protein sumoylation, GO:0019789 - SUMO ligase activity, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed , PO:0009005 - root 
13203	_	OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2	_	SUMO-conjugating enzyme 2, Ubiquitin-conjugating enzyme 2, E2 SUMO conjugation enzyme 1a, SUMO conjugation enzyme 1a, E2 protein SCE1a			3	D29718.OsSCE1a in Chaikam and Dale 2010, Rosa et al. 2018.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0123100	LOC_Os03g03130.1, LOC_Os03g03130.2				GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0016925 - protein sumoylation, GO:0019789 - SUMO ligase activity, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0009005 - root 
13204	MIR601	miR601, osa-miR601, osa-MIR601, Osa-miR601	MICRORNA601	microRNA601, osa-miRNA601	_		8	miRBASE accession: MI0010708. osa-MIR2120 in miRBase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
13205	MIR602A	miR602a, osa-miR602a, osa-MIR602a, Osa-miR602a	MICRORNA602A	microRNA602a, osa-miRNA602a	_		1	miRBASE accession: MI0010709. osa-MIR2121a in miRBase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13206	MIR602B	miR602b, osa-miR602b, osa-MIR602b, Osa-miR602b	MICRORNA602B	microRNA602b, osa-miRNA602b	_		4	miRBASE accession: MI0010710. osa-MIR2121b in miRBase.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13207	MIR602C	miR602c, osa-miR602c, osa-MIR602c, Osa-miR602c	MICRORNA602C	microRNA602c, osa-miRNA602c	_		8		 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13208	MIR603	miR603, osa-miR603, osa-MIR603, Osa-miR603	MICRORNA603	microRNA603, osa-miRNA603	_		2	miRBASE accession: MI0010711. osa-MIR2122 in miRBase.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13209	MIR604A	miR604a, osa-miR604a, osa-MIR604a, Osa-miR604a	MICRORNA604A	microRNA604a, osa-miRNA604a	_		4		 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13210	MIR604B	miR604b, osa-miR604b, osa-MIR604b, Osa-miR604b	MICRORNA604B	microRNA604b, osa-miRNA604b	_		4		 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13211	MIR604C	miR604c, osa-miR604c, osa-MIR604c, Osa-miR604c	MICRORNA604C	microRNA604c, osa-miRNA604c	_		4		 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
13212	MIR605A	miR605a, osa-miR605a, osa-MIR605a, Osa-miR605a	MICRORNA605A	microRNA605a, osa-miRNA605a	_		2		 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13213	MIR605B	miR605b, osa-miR605b, osa-MIR605b, Osa-miR605b	MICRORNA605B	microRNA605b, osa-miRNA605b	_		5		 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13214	MIR605C	miR605c, osa-miR605c, osa-MIR605c, Osa-miR605c	MICRORNA605C	microRNA605c, osa-miRNA605c	_		7		 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13215	MIR605D	miR605d, osa-miR605d, osa-MIR605d, Osa-miR605d	MICRORNA605D	microRNA605d, osa-miRNA605d	_		7		 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13216	MIR605E	miR605e, osa-miR605e, osa-MIR605e, Osa-miR605e	MICRORNA605E	microRNA605e, osa-miRNA605e	_		8		 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13217	MIR605F	miR605f, osa-miR605f, osa-MIR605f, Osa-miR605f	MICRORNA605F	microRNA605f, osa-miRNA605f	_		9		 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13218	MIR605G	miR605g, osa-miR605g, osa-MIR605g, Osa-miR605g	MICRORNA605G	microRNA605g, osa-miRNA605g	_		10		 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13219	MIR605H	miR605h, osa-miR605h, osa-MIR605h, Osa-miR605h	MICRORNA605H	microRNA605h, osa-miRNA605h	_		11		 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13220	MIR605J	miR605j, osa-miR605j, osa-MIR605j, Osa-miR605j	MICRORNA605J	microRNA605j, osa-miRNA605j	_		11		 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13221	MIR605I	miR605i, osa-miR605i, osa-MIR605i, Osa-miR605i	MICRORNA605I	microRNA605i, osa-miRNA605i	_		11		 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13222	MIR606	miR606, osa-miR606, osa-MIR606, Osa-miR606	MICRORNA606	microRNA606, osa-miRNA606	_		3		 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13223	WOX6	OsWOX6, Os WOX6, OsWOX12B	WUSCHEL-LIKE HOMEOBOX 6	WUSCHEL-related homeobox 6	WUSCHEL-LIKE HOMEOBOX 6		3	LOC_Os03g20910. Q10M29, A2XG77. OsWOX12B in Cheng et al. 2014.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Other	Os03g0325600	LOC_Os03g20910.2, LOC_Os03g20910.1				GO:0009735 - response to cytokinin stimulus, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0007275 - multicellular organismal development, GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009790 - embryonic development, GO:0009629 - response to gravity, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000620 - embryo development trait, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000167 - cytokinin sensitivity, TO:0002693 - gravity response trait, TO:0000567 - tiller angle, TO:0000276 - drought tolerance	
13224	DWT1	OsWOX7, Os WOX7, WOX7, OsWOX9A	DWARF TILLER 1	DWARF TILLER1, WUSCHEL-related homeobox 7, WUSCHEL-LIKE HOMEOBOX 7	WUSCHEL-LIKE HOMEOBOX 7	dwt1	1	Q0JKK6. OsWOX9A in Cheng et al. 2014. LOC_Os01g47710.	 Vegetative organ - Culm,  Other	Os01g0667400	LOC_Os01g47710.1				GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009826 - unidimensional cell growth, GO:0009690 - cytokinin metabolic process, GO:0009736 - cytokinin mediated signaling, GO:0009790 - embryonic development, GO:0010336 - gibberellic acid homeostasis, GO:0010476 - gibberellin-mediated signaling, GO:0051301 - cell division, GO:0007275 - multicellular organismal development	TO:0006032 - panicle size, TO:0001005 - basal tiller length, TO:0000145 - internode length, TO:0000620 - embryo development trait	PO:0007089 - stem elongation stage 
13225	WOX8	OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B	WUSCHEL-LIKE HOMEOBOX 8	WUSCHEL-related homeobox 8	WUSCHEL-LIKE HOMEOBOX 8		1	Q5QMM3. AM234755. OsWOX13 in Nardmann and Werr 2006 and Nardmann et al. 2007, Minh-Thu et al. 2018. OsWOX9B in Cheng et al. 2014. GO:2000028: regulation of photoperiodism, flowering. PO:0030123: panicle inflorescence.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Other	Os01g0818400	LOC_Os01g60270.2, LOC_Os01g60270.1				GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent, GO:0048573 - photoperiodism, flowering, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0009015 - portion of vascular tissue , PO:0020104 - leaf sheath , PO:0009005 - root 
13226	WOX10	OsWOX10, Os WOX10, OsWOX11/12, OsWOX11	WUSCHEL-LIKE HOMEOBOX 10	WUSCHEL-related homeobox 10	WUSCHEL-LIKE HOMEOBOX 10		8	Q6Z3L4. AM234754. OsWOX11/12 in Nardmann and Werr 2006 and Nardmann et al. 2007. OsWOX11 in Cheng et al. 2014.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0242400	LOC_Os08g14400.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0009735 - response to cytokinin stimulus, GO:0006351 - transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0007275 - multicellular organismal development	TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000401 - plant growth hormone sensitivity	
13227	WOX11	OsWOX11, Os WOX11, OsWOX12A	WUSCHEL-LIKE HOMEOBOX 11	WUSCHEL-related homeobox 11	WUSCHEL-LIKE HOMEOBOX 11	wox11-1, wox11	7	Q0D3I7. OsWOX12A in Cheng et al. 2014. LOC_Os07g48560.	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Other	Os07g0684900 	LOC_Os07g48560.1				GO:0009735 - response to cytokinin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009414 - response to water deprivation, GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent, GO:0051302 - regulation of cell division, GO:0009926 - auxin polar transport, GO:0009739 - response to gibberellin stimulus, GO:0009629 - response to gravity, GO:0009733 - response to auxin stimulus, GO:0045454 - cell redox homeostasis, GO:0009409 - response to cold, GO:0009736 - cytokinin mediated signaling, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0048364 - root development, GO:0051365 - cellular response to potassium ion starvation	TO:0002692 - root meristem development, TO:0002685 - crown root number, TO:0000346 - tiller number, TO:0002693 - gravity response trait, TO:0000567 - tiller angle, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance	PO:0000025 - root tip , PO:0006085 - root meristem , PO:0000043 - crown root , PO:0007518 - crown root emergence stage 
13228	_	OsAAO	_	ABA Aldehyde Oxidase	_		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0164900	LOC_Os07g07050.2, LOC_Os07g07050.1				GO:0016491 - oxidoreductase activity		
13230	HMA7	osHMA7, osHMA7	HEAVY METAL ATPASE 7	heavy metal ATPase 7, heavy metal P-Type ATPase 7	HEAVY METAL ATPASE 7		8	GO:0035434:copper ion transmembrane transport.	 Biochemical character						GO:0009767 - photosynthetic electron transport chain, GO:0046872 - metal ion binding, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding, GO:0019829 - cation-transporting ATPase activity, GO:0005375 - copper ion transmembrane transporter activity, GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane		
13231	ECA1	osECA1, OsECA1	ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE1	endoplasmic reticulum-type Ca2+ P-Type ATPase 1	ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE1		3	LOC_Os03g17310.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0281600	LOC_Os03g17310.1				GO:0019829 - cation-transporting ATPase activity, GO:0030026 - cellular manganese ion homeostasis, GO:0016021 - integral to membrane, GO:0010042 - response to manganese ion, GO:0009628 - response to abiotic stimulus, GO:0046872 - metal ion binding, GO:0046686 - response to cadmium ion, GO:0006828 - manganese ion transport, GO:0005524 - ATP binding, GO:0005789 - endoplasmic reticulum membrane, GO:0005886 - plasma membrane	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait	
13232	ECA2	osECA2	CA2+-ATPASE 2	endoplasmic reticulum-type Ca2+ P-Type ATPase 2	_		5		 Biochemical character								
13233	ACA1	osACA1, OsACA1, OsACA3, OsPM3ATP2	CA2+-ATPASE 1	Ca2+ P-Type ATPase 1	CA2+-ATPASE 1		3	OsACA3 in Singh et al. 2013.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0203700	LOC_Os03g10640.1				GO:0046872 - metal ion binding, GO:0005388 - calcium-transporting ATPase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
13234	ACA2	osACA2, OsACA10, OsPM12ATP	CA2+-ATPASE 2	Ca2+ P-Type ATPase 2	CA2+-ATPASE 2		12	Q2QMX9. OsACA10 in Singh et al. 2013.	 Biochemical character	Os12g0586600	LOC_Os12g39660.1				GO:0046872 - metal ion binding, GO:0005789 - endoplasmic reticulum membrane, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009706 - chloroplast inner membrane, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity		
13235	ACA3	osACA3, OsACA4, OsPM3ATPB	CA2+-ATPASE 3	Ca2+ P-Type ATPase 3	CA2+-ATPASE 3		3	Q6ATV4. OsACA4 in Singh et al. 2013.	 Biochemical character	Os03g0616400	LOC_Os03g42020.1				GO:0009706 - chloroplast inner membrane, GO:0005886 - plasma membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane		
13236	ACA4	osACA4, OsACA8, OsACA4	CA2+-ATPASE 4	Ca2+ P-Type ATPase 4, vacuolar Ca2+-ATPase 4	CA2+-ATPASE 4		11	Q2RAS0. OsACA8 in Singh et al. 2013.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0140400	LOC_Os11g04460.1				GO:0009507 - chloroplast, GO:0055081 - anion homeostasis, GO:0046872 - metal ion binding, GO:0043069 - negative regulation of programmed cell death, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0009705 - plant-type vacuole membrane, GO:0005388 - calcium-transporting ATPase activity, GO:0009651 - response to salt stress, GO:0009624 - response to nematode, GO:0005524 - ATP binding, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance	
13237	ACA5	osACA5, OsACA9, OsACA5, OsPM12ATP4	CA2+-ATPASE 5	Ca2+ P-Type ATPase 5, vacuolar Ca2+-ATPase 5	CA2+-ATPASE 5		12	Q2QY12. OsACA9 in Singh et al. 2013.	 Biochemical character	Os12g0136900	LOC_Os12g04220.1				GO:0016021 - integral to membrane, GO:0005388 - calcium-transporting ATPase activity, GO:0009651 - response to salt stress, GO:0009705 - plant-type vacuole membrane, GO:0055081 - anion homeostasis, GO:0042742 - defense response to bacterium, GO:0046872 - metal ion binding, GO:0043069 - negative regulation of programmed cell death, GO:0009624 - response to nematode, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
13238	ACA6	osACA6, OsACA1, OsACA6, OsPM1ATPaseII	CA2+-ATPASE 6	Ca2+ P-Type ATPase 6, vacuolar Ca2+-ATPase 6	CA2+-ATPASE 6		1	Q8RUN1. OsACA1 in Singh et al. 2013. Calcium-transporting ATPase (CaC) in Hu et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0939100	LOC_Os01g71240.1				GO:0009409 - response to cold, GO:0005388 - calcium-transporting ATPase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding	TO:0000303 - cold tolerance, TO:0000429 - salt sensitivity	
13239	ACA7	osACA7, OsACA6, OsACA7, OsPM5ATP4	CA2+-ATPASE 7	Ca2+ P-Type ATPase 7, vacuolar Ca2+-ATPase 7	CA2+-ATPASE 7		5	Q65X71. OsACA6 in Singh et al. 2013.	 Biochemical character	Os05g0495600	LOC_Os05g41580.1				GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding		
13240	ACA8	osACA8, OsACA7	CA2+-ATPASE 8	Ca2+ P-Type ATPase 8	CA2+-ATPASE 8		10	OsACA7 in Singh et al. 2013.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0418100	LOC_Os10g28240.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0005388 - calcium-transporting ATPase activity	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
13241	ACA9	osACA9, OsACA2, OsPM2ATP9	CA2+-ATPASE 9	Ca2+ P-Type ATPase 9	CA2+-ATPASE 9		12	OsACA2 in Singh et al. 2013.	 Biochemical character	Os02g0176700	LOC_Os02g08018.1, LOC_Os02g08014.1, LOC_Os02g08010.1				GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0005388 - calcium-transporting ATPase activity, GO:0005524 - ATP binding		
13242	ACA10	osACA10	CA2+-ATPASE 10	Ca2+ P-Type ATPase 10	CA2+-ATPASE 10		8		 Biochemical character						GO:0016021 - integral to membrane, GO:0005388 - calcium-transporting ATPase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding		
13243	ACA11	osACA11, OsACA6, OsACA5, OsPM4ATP8	CA2+-ATPASE 11	Ca2+ P-Type ATPase 11	CA2+-ATPASE 11		4	LOC_Os04g51610. OsACA6 in Huda et al. 2013 and 2014. OsACA5 in Singh et al. 2013.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0605500	LOC_Os04g51610.3, LOC_Os04g51610.1				GO:0007338 - single fertilization, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity, GO:0009555 - pollen development, GO:0048367 - shoot development, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009624 - response to nematode, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0009409 - response to cold, GO:0048281 - inflorescence morphogenesis, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
13244	ALA1	osALA1	AMINOPHOSPHOLIPID ATPASE 1	aminophospholipid P-Type ATPase 1	AMINOPHOSPHOLIPID ATPASE 1		3		 Biochemical character	Os03g0334700	LOC_Os03g21680.4, LOC_Os03g21680.3, LOC_Os03g21680.2, LOC_Os03g21680.1				GO:0004012 - phospholipid-translocating ATPase activity, GO:0000287 - magnesium ion binding, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity		
13245	ALA2	osALA2	AMINOPHOSPHOLIPID ATPASE 2	aminophospholipid P-Type ATPase 2	AMINOPHOSPHOLIPID ATPASE 2		1		 Biochemical character	Os01g0277600	LOC_Os01g17010.1				GO:0000287 - magnesium ion binding, GO:0005388 - calcium-transporting ATPase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004012 - phospholipid-translocating ATPase activity		
13246	ALA3	osALA3	AMINOPHOSPHOLIPID ATPASE 3	aminophospholipid P-Type ATPase 3	AMINOPHOSPHOLIPID ATPASE 3		1		 Biochemical character						GO:0000287 - magnesium ion binding, GO:0004012 - phospholipid-translocating ATPase activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0019829 - cation-transporting ATPase activity, GO:0005524 - ATP binding		
13247	ALA4	osALA4	AMINOPHOSPHOLIPID ATPASE 4	aminophospholipid P-Type ATPase 4	AMINOPHOSPHOLIPID ATPASE 4		5		 Biochemical character						GO:0000287 - magnesium ion binding, GO:0019829 - cation-transporting ATPase activity, GO:0004012 - phospholipid-translocating ATPase activity, GO:0009941 - chloroplast envelope, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
13248	ALA5	osALA5	AMINOPHOSPHOLIPID ATPASE 5	aminophospholipid P-Type ATPase 5	AMINOPHOSPHOLIPID ATPASE 5		6		 Biochemical character						GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane, GO:0019829 - cation-transporting ATPase activity, GO:0000287 - magnesium ion binding, GO:0004012 - phospholipid-translocating ATPase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
13249	ALA6	osALA6	AMINOPHOSPHOLIPID ATPASE 6	aminophospholipid P-Type ATPase 6	AMINOPHOSPHOLIPID ATPASE 6		8		 Biochemical character						GO:0019829 - cation-transporting ATPase activity, GO:0000287 - magnesium ion binding, GO:0004012 - phospholipid-translocating ATPase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
13250	ALA7	osALA7	AMINOPHOSPHOLIPID ATPASE 7	aminophospholipid P-Type ATPase 7	AMINOPHOSPHOLIPID ATPASE 7		6		 Biochemical character						GO:0019829 - cation-transporting ATPase activity, GO:0008270 - zinc ion binding, GO:0005524 - ATP binding, GO:0004012 - phospholipid-translocating ATPase activity, GO:0000287 - magnesium ion binding, GO:0016021 - integral to membrane		
13251	ALA8	osALA8	AMINOPHOSPHOLIPID ATPASE 8	aminophospholipid P-Type ATPase 8	AMINOPHOSPHOLIPID ATPASE 8		10		 Biochemical character								
13252	ALA9	osALA9	AMINOPHOSPHOLIPID ATPASE 9	aminophospholipid P-Type ATPase 9	AMINOPHOSPHOLIPID ATPASE 9		4		 Biochemical character								
13253	ALA10	osALA10	AMINOPHOSPHOLIPID ATPASE 10	aminophospholipid P-Type ATPase 10	AMINOPHOSPHOLIPID ATPASE 10		4		 Biochemical character								
13254	P5	osP5	P-TYPE ATPASE 5	P-Type ATPase 5	P-TYPE ATPASE 5		5		 Biochemical character								
13255	CYCA1;2	CycA1;1, CycA1;os;1, Orysa;CycA1;2	CYCLIN-A1-2	A-type cyclin 1;2	CYCLIN-A1-2		1		 Biochemical character								
13256	CYCA3;1	CycA3;1, CycA3;os;1, Orysa;CycA3;1	CYCLIN-A3-1	A-type cyclin 3;1	CYCLIN-A3-1		3	Q75I54.	 Biochemical character	Os03g0607600	LOC_Os03g41100.1				GO:0007049 - cell cycle, GO:0005737 - cytoplasm, GO:0051301 - cell division, GO:0005634 - nucleus, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13257	CYCA3;2	CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1	CYCLIN-A3-2	A-type cyclin 3;2	CYCLIN-A3-2		12	Q2QN26. LOC_Os12g39210. CYCA2.1 in Xu et al. 2014.	 Biochemical character	Os12g0581800	LOC_Os12g39210.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0051301 - cell division, GO:0007049 - cell cycle		
13258	CYCA3;3	CycA3;3, CycA3;os;3, Orysa;CycA3;3	CYCLIN-A3-3	A-type cyclin 3;3	CYCLIN-A3-3		3		 Biochemical character								
13259	CYCA3;4	CycA3;4, CycA3;os;4, Orysa;CycA3;4	CYCLIN-A3-4	A-type cyclin 3;4	CYCLIN-A3-4		3		 Biochemical character								
13260	CYCB1;1	CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm	CYCLIN-B1-1	B-type cyclin 1;1	CYCLIN-B1-1		1	Q0JIF2. LOC_Os01g59120.	 Biochemical character,  Seed - Morphological traits - Endosperm	Os01g0805600	LOC_Os01g59120.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0009960 - endosperm development, GO:0007088 - regulation of mitosis, GO:0051301 - cell division	TO:0000587 - endosperm quality, TO:0000575 - endosperm related trait, TO:0000653 - seed development trait	
13261	CYCB1;2	CycB1;2, CycB1;os;2, Orysa;CycB1;2	CYCLIN-B1-2	B-type cyclin 1;2	CYCLIN-B1-2		5	Q0DH40.	 Biochemical character	Os05g0493500	LOC_Os05g41390.1				GO:0010332 - response to gamma radiation, GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0001558 - regulation of cell growth, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
13262	CYCB1;3	CycB1;3, CycB1;os;3, Orysa;CycB1;3	CYCLIN-B1-3	B-type cyclin 1;3	CYCLIN-B1-3		2		 Biochemical character								
13263	CYCD1;1	CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1	CYCLIN-D1-1	D-type cyclin 1;1	CYCLIN-D1-1		9	Q0J233.	 Biochemical character	Os09g0382300	LOC_Os09g21450.1				GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus		
13264	CYCD1;2	CycD1;2, CycD1;os;2, Orysa;CycD1;2, Orysa;CYCD1;2	CYCLIN-D1-2	D-type cyclin 1;2	CYCLIN-D1-2		6	Q67V81.	 Biochemical character	Os06g0236600	LOC_Os06g12980.1				GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0051301 - cell division		
13265	CYCD2;2	CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2	CYCLIN-D2-2	D-type cyclin 2;2	CYCLIN-D2-2		6	Q69QB8.	 Biochemical character	Os06g0217900	LOC_Os06g11410.2, LOC_Os06g11410.1				GO:0007049 - cell cycle, GO:0005634 - nucleus, GO:0051301 - cell division		
13266	CYCD2;3	CycD2;3, CycD2;os;3, Orysa;CycD2;3, Orysa;CYCD2;3	CYCLIN-D2-3	D-type cyclin 2;3	CYCLIN-D2-3		3	Q10K98.	 Biochemical character	Os03g0392000	LOC_Os03g27420.1				GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0051301 - cell division		
13267	CYCD4;2	CycD4;2, CycD4;os;2, Orysa;CycD4;2, Orysa;CYCD4;2	CYCLIN-D4-2	D-type cyclin 4;2	CYCLIN-D4-2		8	Q4KYM5.	 Biochemical character	Os08g0479300	LOC_Os08g37390.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0051301 - cell division, GO:0005634 - nucleus, GO:0007049 - cell cycle		
13268	CYCD3;1	CycD3;1, CycD3;os;1, Orysa;CycD3;1, Orysa;CYCD3;1	CYCLIN-D3-1	D-type cyclin 3;1	CYCLIN-D3-1		9	Q0J3H7.	 Biochemical character	Os09g0111100	LOC_Os09g02360.1				GO:0007049 - cell cycle, GO:0051301 - cell division		
13269	CYCD5;1	CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2	CYCLIN-D5-1	D-type cyclin 5;1	CYCLIN-D5-1		12	Q2QMW1. OsCYCD5;2 in Zhao et al. 2014.	 Biochemical character	Os12g0588800	LOC_Os12g39830.1				GO:0051726 - regulation of cell cycle, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0051301 - cell division		
13270	CYCD5;2	CycD5;2, CycD5;os;2, Orysa;CycD5;2, Orysa;CYCD5;2	CYCLIN-D5-2	D-type cyclin 5;2	CYCLIN-D5-2		3	Q0DQA9.	 Biochemical character	Os03g0617500	LOC_Os03g42070.1				GO:0051301 - cell division, GO:0005634 - nucleus, GO:0007049 - cell cycle		
13271	CYCD5;4	CycD5;4, CycD5;os;4, Orysa;CycD5;4	CYCLIN-D5-4	D-type cyclin 5;4	CYCLIN-D5-4		3		 Biochemical character								
13272	CYCD6;1	CycD6;1, CycD6;os;1, Orysa;CycD6;1, Orysa;CYCD6;1	CYCLIN-D6-1	D-type cyclin 6;1	CYCLIN-D6-1		7	Q69S43.	 Biochemical character	Os07g0556000	LOC_Os07g37010.2, LOC_Os07g37010.1				GO:0007049 - cell cycle, GO:0051301 - cell division		
13273	CYCD7;1	CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3	CYCLIN-D7-1	D-type cyclin 7;1	CYCLIN-D7-1		11	Q53MB7. OsCYCD3 in Hua et al. 2015.	 Biochemical character	Os11g0706801	LOC_Os11g47950.1				GO:0009735 - response to cytokinin stimulus, GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0005634 - nucleus	TO:0000167 - cytokinin sensitivity	
13274	CYCL1;1	CycL1;1, CycL1;os;1, Orysa;CycL1;1	CYCLIN-L1-1	L-type cyclin 1;1	CYCLIN-L1-1		1	Q9AS36.	 Biochemical character	Os01g0377500	LOC_Os01g27940.2, LOC_Os01g27940.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0006396 - RNA processing, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent		
13275	CYCT1;1	CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1	CYCLIN-T1-1	T-type cyclin 1;1	CYCLIN-T1-1		2	LOC_Os02g24190. Q6Z7H3.	 Biochemical character	Os02g0438200	LOC_Os02g24190.3, LOC_Os02g24190.2, LOC_Os02g24190.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0006355 - regulation of transcription, DNA-dependent		
13276	CYCT1;2	CycT1;2, CycT1;os;2, Orysa;CycT1;2	CYCLIN-T1-2	T-type cyclin 1;2	CYCLIN-T1-2		2		 Biochemical character								
13277	CYCT1;3	CycT1;3, CycT1;os;3, Orysa;CycT1;3	CYCLIN-T1-3	T-type cyclin 1;3	CYCLIN-T1-3		2	Q0E474.	 Biochemical character	Os02g0133000	LOC_Os02g04010.4, LOC_Os02g04010.3, LOC_Os02g04010.2, LOC_Os02g04010.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007049 - cell cycle, GO:0051301 - cell division		
13278	CYCT1;4	CycT1;4, CycT1;os;4, Orysa;CycT1;4	CYCLIN-T1-4	T-type cyclin 1;4	CYCLIN-T1-4		11	Q2RAC5.	 Biochemical character	Os11g0157100	LOC_Os11g05850.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0051301 - cell division		
13279	CYCT1;5	CycT1;5, CycT1;os;5, Orysa;CycT1;5	CYCLIN-T1-5	T-type cyclin 1;5	CYCLIN-T1-5		11		 Biochemical character								
13280	CYCT1;6	CycT1;6, CycT1;os;6, Orysa;CycT1;6	CYCLIN-T1-6	T-type cyclin 1;6	CYCLIN-T1-6		12	Q2QQS5.	 Biochemical character	Os12g0485400	LOC_Os12g30020.2, LOC_Os12g30020.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0048366 - leaf development, GO:0007049 - cell cycle, GO:0006355 - regulation of transcription, DNA-dependent, GO:0050792 - regulation of viral reproduction, GO:0009615 - response to virus, GO:0005634 - nucleus, GO:0010090 - trichome morphogenesis, GO:0051301 - cell division, GO:0009908 - flower development		
13281	CYCU1;1	CycU1;1, CycU1;os;1, Orysa;CycU1;1, OsCYCP2;1	CYCLIN-U1-1	U-type cyclin 1;1, P-type cyclin 2;1	CYCLIN-U1-1		4	Q0J9W0. LOC_Os04g53680. OsCYCP2;1 in Deng et al. 2014. a PHO80 homologous protein. Os04g0628700 (in Rap1 (build3) ,Rap2 (build4)).	 Biochemical character	Os04g0628900	LOC_Os04g53680.1				GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13282	CYCU2;1	CycU2;1, CycU2;os;1, Orysa;CycU2;1, OsCYCP3;1, CYC U2	CYCLIN-U2-1	U-type cyclin 2;1, P-type cyclin 3;1, U-type cyclin 2	CYCLIN-U2-1	CYC U2m	4	Q7FAT5. LOC_Os04g46660. OsCYCP3;1 in Deng et al. 2014. a PHO80 homologous protein.	 Biochemical character,  Vegetative organ - Culm	Os04g0552300	LOC_Os04g46660.1				GO:0009742 - brassinosteroid mediated signaling, GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity	TO:0000544 - mesocotyl length, TO:0002677 - brassinosteroid sensitivity	
13283	CYCU3;1	CycU3;1, CycU3;os;1, Orysa;CycU3;1, OsCYCP1;1	CYCLIN-U3-1	U-type cyclin 3;1, P-type cyclin 1;1	CYCLIN-U3-1		5	Q75HV0. LOC_Os05g33040. OsCYCP1;1 in Deng et al. 2014. a PHO80 homologous protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0398000	LOC_Os05g33040.3, LOC_Os05g33040.2, LOC_Os05g33040.1				GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13284	CYCU4;3	CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1	CYCLIN-U4-3	U-type cyclin 4;3, P-type cyclin 4;1	CYCLIN-U4-3		10	Q7XC35. OsCYCP4;1 in Deng et al. 2014. a PHO80 homologous protein.	 Biochemical character	Os10g0563900	LOC_Os10g41430.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007049 - cell cycle, GO:0051301 - cell division		
13285	CYCU4;4	CycU4;4, CycU4;os;4, Orysa;CycU4;4, OsCYCP4;2	CYCLIN-U4-4	U-type cyclin 4;4, P-type cyclin 4;2	CYCLIN-U4-4		2	LOC_Os02g43550. OsCYCP4;2 in Deng et al. 2014. a PHO80 homologous protein.	 Biochemical character	Os02g0652000	LOC_Os02g43550.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13286	CYCU4;5	CycU4;5, CycU4;os;5, Orysa;CycU4;5	CYCLIN-U4-5	U-type cyclin 4;5	CYCLIN-U4-5		2		 Biochemical character								
13287	CYCU4;1	CycU4;1, CycU4;os;1, Orysa;CycU4;1	CYCLIN-U4-1	U-type cyclin 4;1	CYCLIN-U4-1		10		 Biochemical character						GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13288	CYCU4;2	CycU4;2, CycU4;os;2, Orysa;CycU4;2	CYCLIN-U4-2	U-type cyclin 4;2	CYCLIN-U4-2		4		 Biochemical character								
13289	CDKB;1	CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1	CYCLIN-DEPENDENT KINASE B;1	B1-type cyclin-dependent kinase	CYCLIN-DEPENDENT KINASE B;1		1	LOC_Os01g67160. Q8L4P8. AB239918.	 Biochemical character	Os01g0897000	LOC_Os01g67160.1				GO:0009826 - unidimensional cell growth, GO:0010376 - stomatal complex formation, GO:0048825 - cotyledon development, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004693 - cyclin-dependent protein kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity		PO:0020094 - plant egg cell 
13290	CDKC;1	CDKC;1, Orysa;CDKC;1, Orysa;CDKC;2, CDKC;2, OsCDKC;2, OsCDKC2	CYCLIN-DEPENDENT KINASE C;1	C-type cyclin-dependent protein kinase 2	CYCLIN-DEPENDENT KINASE C;1		5	Q6I5Y0. Orysa;CDKC;2 in Huang et al. 2008.	 Biochemical character	Os05g0389700	LOC_Os05g32360.1				GO:0050792 - regulation of viral reproduction, GO:0048440 - carpel development, GO:0048366 - leaf development, GO:0016604 - nuclear body, GO:0009615 - response to virus, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0006397 - mRNA processing		
13291	CDKC;2	CDKC;2, Orysa;CDKC;2, Orysa;CDKC;1, CDKC;1, OsCDKC1, OsCDKC;1	CYCLIN-DEPENDENT KINASE C;2	C-type cyclin-dependent protein kinase 1	CYCLIN-DEPENDENT KINASE C;2		1	Q5JK68. AJ564977. Orysa;CDKC;1 in Huang et al. 2008.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0958000	LOC_Os01g72790.1				GO:0009737 - response to abscisic acid stimulus, GO:0016604 - nuclear body, GO:0048366 - leaf development, GO:0048440 - carpel development, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0006397 - mRNA processing, GO:0005524 - ATP binding, GO:0004693 - cyclin-dependent protein kinase activity, GO:0009651 - response to salt stress, GO:0050792 - regulation of viral reproduction, GO:0009615 - response to virus, GO:0005829 - cytosol	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
13292	CDKC;3	CDKC;3, Orysa;CDKC;3	CYCLIN-DEPENDENT KINASE C;3		CYCLIN-DEPENDENT KINASE C;3		8	Q6ZAG3.	 Biochemical character	Os08g0453800	LOC_Os08g35220.2, LOC_Os08g35220.1				GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity		
13293	CDKD;1	CDKD;1, Orysa;CDKD;1, R2, CAK R2, CDKD1;3	CYCLIN-DEPENDENT KINASE D;1	Cyclin-Dependent Kinase-Activating Kinase R2	CYCLIN-DEPENDENT KINASE D;1		5	P29620. X58194. cdc2+/CDC28-related protein kinase. CDKD1;3  in Dedecker et al. 2016. LOC_Os05g32600. CDK-activating kinase complex subunit.	 Biochemical character	Os05g0392300	LOC_Os05g32600.2, LOC_Os05g32600.1				GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0051301 - cell division, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005634 - nucleus		
13294	CDKE;1	CDKE;1, Orysa;CDKE;1, OsCdk8_1, Cdk8_1	CYCLIN-DEPENDENT KINASE E;1		CYCLIN-DEPENDENT KINASE E;1		10	Q336M2. one of the 55 MED (Mediator) subunits. LOC_Os10g42950. 	 Biochemical character	Os10g0580300	LOC_Os10g42950.5, LOC_Os10g42950.4, LOC_Os10g42950.3, LOC_Os10g42950.2, LOC_Os10g42950.1				GO:0004693 - cyclin-dependent protein kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005524 - ATP binding		
13295	CDKF;1	CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A	CYCLIN-DEPENDENT KINASE F;1		CYCLIN-DEPENDENT KINASE F;1		6	Q5Z754. LOC_Os06g22820. TFIIH sub-complex.	 Biochemical character	Os06g0334400	LOC_Os06g22820.1				GO:0019912 - cyclin-dependent protein kinase activating kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0010078 - maintenance of root meristem identity		
13296	CDKF;2	CDKF;2, Orysa;CDKF;2	CYCLIN-DEPENDENT KINASE F;2		CYCLIN-DEPENDENT KINASE F;2		12		 Biochemical character								
13297	CDKF;3	CDKF;3, Orysa;CDKF;3	CYCLIN-DEPENDENT KINASE F;3		CYCLIN-DEPENDENT KINASE F;3		3	Q84SN3.	 Biochemical character	Os03g0847600	LOC_Os03g63020.5, LOC_Os03g63020.4, LOC_Os03g63020.3, LOC_Os03g63020.2, LOC_Os03g63020.1				GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding		
13298	CDKF;4	CDKF;4, Orysa;CDKF;4	CYCLIN-DEPENDENT KINASE F;4		CYCLIN-DEPENDENT KINASE F;4		2	Q6Z8C8.	 Biochemical character	Os02g0700600	LOC_Os02g47220.3, LOC_Os02g47220.2, LOC_Os02g47220.1				GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005524 - ATP binding, GO:0004693 - cyclin-dependent protein kinase activity		
13299	CDKG;2	CDKG;2, Orysa;CDKG;2	CYCLIN-DEPENDENT KINASE G;2		CYCLIN-DEPENDENT KINASE G;2		4	Q7XUF4.	 Biochemical character	Os04g0488000	LOC_Os04g41100.6, LOC_Os04g41100.5, LOC_Os04g41100.4, LOC_Os04g41100.3, LOC_Os04g41100.2, LOC_Os04g41100.1				GO:0004693 - cyclin-dependent protein kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005524 - ATP binding		
13300	_	Orysa;CKL1, OsSTA287	_	CDK-LIKE 1, cyclin-dependent kinase-like 1	_		12	LOC_Os12g38860. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0577700	LOC_Os12g38860.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		PO:0009066 - anther 
13301	_	Orysa;CKL2	_	CDK-LIKE 2, cyclin-dependent kinase-like 2	_		7		 Biochemical character	Os07g0596600	LOC_Os07g40550.3, LOC_Os07g40550.2, LOC_Os07g40550.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
13302	_	Orysa;CKL4	_	CDK-LIKE 4, cyclin-dependent kinase-like 4	_		1			Os01g0201000	LOC_Os01g10430.2, LOC_Os01g10430.1				GO:0005886 - plasma membrane		
13303	_	Orysa;CKL5	_	CDK-LIKE 5, cyclin-dependent kinase-like 5	_		1		 Biochemical character	Os01g0367700	LOC_Os01g27020.5, LOC_Os01g27020.4, LOC_Os01g27020.3, LOC_Os01g27020.2, LOC_Os01g27020.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13304	_	Orysa;CKL6	_	CDK-LIKE 6, cyclin-dependent kinase-like 6	_		7		 Biochemical character	Os07g0668000	LOC_Os07g47180.2, LOC_Os07g47180.1				GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0005886 - plasma membrane		
13305	_	Orysa;CKL7	_	CDK-LIKE 7, cyclin-dependent kinase-like 7	_		11		 Biochemical character	Os11g0242500	LOC_Os11g13860.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13306	_	Orysa;CKL8, OsSTA277	_	CDK-LIKE 8, cyclin-dependent kinase-like 8	_		12	LOC_Os12g10190. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0203000	LOC_Os12g10190.2, LOC_Os12g10190.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		PO:0009066 - anther 
13307	_	Orysa;CKL9	_	CDK-LIKE 9, cyclin-dependent kinase-like 9	_		2		 Biochemical character	Os02g0559300	LOC_Os02g35300.3, LOC_Os02g35300.2, LOC_Os02g35300.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13308	_	CKL10, Orysa;CKL10, OsCKL:10, CKL:10	_	CDK-LIKE 10, cyclin-dependent kinase-like 10	_		8		 Biochemical character	Os08g0112500	LOC_Os08g02050.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13309	_	Orysa;CKS1	_	CDK subunit protein 1	_		3	Q6PS57.	 Biochemical character	Os03g0146300	LOC_Os03g05300.1				GO:0005737 - cytoplasm, GO:0016538 - cyclin-dependent protein kinase regulator activity, GO:0051726 - regulation of cell cycle, GO:0000278 - mitotic cell cycle, GO:0051301 - cell division, GO:0042023 - DNA endoreduplication, GO:0005634 - nucleus		
13310	_	Orysa;E2F1, OsE2F1, E2F1	_	E2F transcription factor 1	_		2	LOC_Os02g33430. AB041725. HQ858830. E2F-DP transcription factor. 	 Other	Os02g0537500	LOC_Os02g33430.2, LOC_Os02g33430.1				GO:0006351 - transcription, DNA-dependent, GO:0045787 - positive regulation of cell cycle, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005667 - transcription factor complex		
13311	_	Orysa;E2F2, OsE2F2, E2F2	_	E2F transcription factor 2	_		12	LOC_Os12g06200. AB041726.	 Other	Os12g0158800	LOC_Os12g06200.2, LOC_Os12g06200.1				GO:0003700 - transcription factor activity, GO:0005667 - transcription factor complex, GO:0003677 - DNA binding, GO:0045787 - positive regulation of cell cycle, GO:0006351 - transcription, DNA-dependent		
13312	_	Orysa;E2F3, OsE2F3	_	E2F transcription factor 3	_		4		 Other	Os04g0416100	LOC_Os04g33950.1				GO:0006351 - transcription, DNA-dependent, GO:0005667 - transcription factor complex, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
13313	_	Orysa;E2F4, OsE2F4	_	E2F transcription factor 4	_		4		 Other	Os04g0112200	LOC_Os04g02140.1				GO:0006351 - transcription, DNA-dependent, GO:0005667 - transcription factor complex, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
13314	_	Orysa;DEL1	_	DP-LIKE 1	_		2		 Other	Os02g0739700	LOC_Os02g50630.1				GO:0003700 - transcription factor activity, GO:0042023 - DNA endoreduplication, GO:0003677 - DNA binding, GO:0032876 - negative regulation of DNA endoreduplication, GO:0005667 - transcription factor complex, GO:0006351 - transcription, DNA-dependent		
13315	_	Orysa;DEL2	_	DP-LIKE 2	_		6		 Other	Os06g0245900	LOC_Os06g13670.1				GO:0042023 - DNA endoreduplication, GO:0006351 - transcription, DNA-dependent, GO:0005667 - transcription factor complex, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0032876 - negative regulation of DNA endoreduplication		
13316	_	Orysa;DP1, OsDP1, DP1	_		_		1	AY224529.	 Other	Os01g0678700	LOC_Os01g48700.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005667 - transcription factor complex, GO:0003700 - transcription factor activity		
13317	_	Orysa;DP2, DP TF	_	DP transcription factor	_		10	AK240989. AY224551.	 Other	Os10g0440100	LOC_Os10g30420.1				GO:0005737 - cytoplasm, GO:0006351 - transcription, DNA-dependent, GO:0042023 - DNA endoreduplication, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005667 - transcription factor complex		
13318	_	Orysa;DP3	_	E2F dimerization factor	_		3	AY224589.	 Other	Os03g0152100	LOC_Os03g05760.1				GO:0005737 - cytoplasm, GO:0042023 - DNA endoreduplication, GO:0006351 - transcription, DNA-dependent, GO:0005667 - transcription factor complex, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
13319	_	Orysa;Rb1, RBR1, OsRBR2	_	retinoblastoma protein homolog 1, etinoblastoma-related 1, retinoblastoma-related protein-2	_		11	Q2R374. AY941775. OsRBR2 in Lendvai et al. 2007 and Abraham et al. 2014.	 Other	Os11g0533500	LOC_Os11g32900.2, LOC_Os11g32900.1				GO:0006351 - transcription, DNA-dependent, GO:0007049 - cell cycle, GO:0051726 - regulation of cell cycle, GO:0005634 - nucleus, GO:0045786 - negative regulation of cell cycle, GO:0006355 - regulation of transcription, DNA-dependent		
13320	_	Orysa;Rb2, RBR2, OsRBR1	_	retinoblastoma protein homolog 2, etinoblastoma-related 2, retinoblastoma-related protein-1	_		8	Q84QM3. AY941774. OsRBR1 in Lendvai et al. 2007 and Abraham et al. 2014.	 Other	Os08g0538700	LOC_Os08g42600.2, LOC_Os08g42600.1				GO:0045786 - negative regulation of cell cycle, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0051726 - regulation of cell cycle, GO:0005634 - nucleus, GO:0007049 - cell cycle		
13321	_	Ores;Wee1, OsWEE1, WEE1	_	protein kinase Wee1	_		2	Q6Z829. 	 Biochemical character	Os02g0135300	LOC_Os02g04240.1				GO:0004715 - non-membrane spanning protein tyrosine kinase activity, GO:0007050 - cell cycle arrest, GO:0031570 - DNA integrity checkpoint, GO:0046872 - metal ion binding, GO:0000076 - DNA replication checkpoint, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		PO:0000423 - plant zygote 
13322	_	Orysa;Wee2	_	protein kinase Wee2	_		2										
13323	CYCD1;3	CycD1;3, CycD1;os;3, Orysa;CycD1;3, Orysa;CYCD1;3	CYCLIN-D1-3	D-type cyclin 1;3	CYCLIN-D1-3		8	Q8H339.	 Biochemical character	Os08g0421100	LOC_Os08g32540.1				GO:0051301 - cell division, GO:0005634 - nucleus, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007049 - cell cycle		
13324	_		_	beta-lactase2, beta-lactase 2			1		 Biochemical character	Os01g0952600	LOC_Os01g72340.1				GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity, GO:0009507 - chloroplast, GO:0030246 - carbohydrate binding, GO:0009341 - beta-galactosidase complex		
13325	_	GalM4	_				4		 Biochemical character	Os04g0458300	LOC_Os04g38530.1				GO:0019318 - hexose metabolic process, GO:0030246 - carbohydrate binding, GO:0004034 - aldose 1-epimerase activity		
13326	_	GalK2	_				4		 Biochemical character	Os04g0608100	LOC_Os04g51880.6, LOC_Os04g51880.5, LOC_Os04g51880.4, LOC_Os04g51880.3, LOC_Os04g51880.2, LOC_Os04g51880.1				GO:0005737 - cytoplasm, GO:0046396 - D-galacturonate metabolic process, GO:0047912 - galacturonokinase activity, GO:0004335 - galactokinase activity, GO:0006012 - galactose metabolic process, GO:0005524 - ATP binding		
13327	_	GalT	_				7		 Biochemical character	Os07g0171200	LOC_Os07g07550.1				GO:0080040 - positive regulation of cellular response to phosphate starvation, GO:0008270 - zinc ion binding, GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity, GO:0006012 - galactose metabolic process		
13328	_	BTI-1	_				8		 Biochemical character	Os08g0520000	LOC_Os08g40850.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
13329	GPT2	OsGPT2	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2	Glc-6-phosphate translocator2, Glc-6-phosphate translocator 2	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2		7		 Biochemical character	Os07g0523600	LOC_Os07g33954.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
13330	_	HPibH8-1	_	PibH8 homologue 1				5 kb Pib family gene. It may also be a NBS-LRR gene.									
13331	_	HPibH8-2	_	PibH8 homologue 2				7 kb Pib family gene. It may also be a NBS-LRR gene.									
13332	PIB2	Pib2	PYRICULARIA ORYZAE RESISTANCE B 2	Magnaporthe grisea resistance-b2, Pib homolog			2	AB013450.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13333	_	rbcL	_	large subunit of Rubisco					 Biochemical character								
13334	_	rbcS	_	Small subunits of Rubisco	SMALL SUBUNITS OF RUBISCO 				 Biochemical character						GO:0019253 - reductive pentose-phosphate cycle, GO:0055114 - oxidation reduction, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0004497 - monooxygenase activity, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0009853 - photorespiration		
13335	PI12	Pi12(t), Pi12(t)*, Pi12, Pi-12(t)	PYRICULARIA ORYZAE RESISTANCE 12	Pyricularia oryzae resistance from Hong-jiao zhan (an indica cultivar), Magnaporthe grisea resistance-12, Blast resistance 12			12	PO:0009025; leaf. K80(Hong-jiao-zhan(Indica)):Map position (47.6-48.2 cM).	 Tolerance and resistance - Disease resistance			GR:0060640			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000485 - sterility related trait	PO:0009025 - vascular leaf 
13336	PI22	Pi22, Pi-22, Pi 22	PYRICULARIA ORYZAE RESISTANCE 22	Pyricularia oryzae resistance-22, Magnaporthe grisea resistance-22, Blast resistance 22				Original line is Pai-kan-tao (Japonica). Pi22 is controlling resistant to Pyricularia oryzae race 22.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000498 - female fertility restoration trait, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	
13337	PI42	Pi42(t), Pi-42(t), Pi42	PYRICULARIA ORYZAE RESISTANCE 42 	Pyricularia grisea resistance 42, Magnaporthe grisea resistance 42, Blast resistance 42			8	Original line is Zhe733 (Indica). Pi41 in Lee et al. 2009 (Plant & Animal Genomics XVII Conference) was renamed Pi42 in Lee et al. 2009 (Mol Breeding  2009 24 127-134).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13338	PI13	Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*	PYRICULARIA ORYZAE RESISTANCE 13	Pyricularia oryzae resistance 13, Magnaporthe grisea resistance 13, Blast resistance 13			6	a resistant gene found in Kasalath (Indica).	 Tolerance and resistance - Disease resistance			GR:0060642			GO:0009620 - response to fungus	TO:0000486 - seed color, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	
13339	PI14	Pi14(t), Pi14(t)*, Pi14	PYRICULARIA ORYZAE RESISTANCE 14	Pyricularia oryzae resistance 14, Magnaporthe grisea resistance-14, Blast resistance 14			12	a resistant gene found in Kasalath (indica).  	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance	
13340	PI11	Pi-11(t)*	PYRICULARIA ORYZAE RESISTANCE 11	Pyricularia oryzae resistance 11, Magnaporthe grisea resistance zh, Blast resistance 11				Original line is Hongjiaozhan (Indica).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000484 - seed shape, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	
13341	WSI76	wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24	WATER STRESS INDUCIBLE PROTEIN 76	water stress-induced 76, GALACTINOL SYNTHASE 2	WATER STRESS INDUCIBLE PROTEIN 76		7	D26537. GolS2  homologue in Wang et al. 2016.	 Tolerance and resistance - Stress tolerance	Os07g0687900 	LOC_Os07g48830.2, LOC_Os07g48830.1				GO:0048511 - rhythmic process, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009644 - response to high light intensity, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0042542 - response to hydrogen peroxide	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath 
13342	PLS1	OsVHA-A, VHAA1, VHA-A1, OsPLS1, OsPSL1/VHA-A1	PREMATURE LEAF SENESCENCE 1	vacuolar H+-ATPase subunit A, vacuolar-type H+-ATPase subunit A1, premature leaf senescence 1		ospls1	6	LOC_Os06g45120. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Biochemical character,  Vegetative organ - Leaf,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os06g0662000 	LOC_Os06g45120.2, LOC_Os06g45120.1				GO:0010148 - transpiration, GO:0009941 - chloroplast envelope, GO:0009651 - response to salt stress, GO:0009555 - pollen development, GO:0007030 - Golgi organization, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0005618 - cell wall, GO:0005524 - ATP binding, GO:0000325 - plant-type vacuole, GO:0009751 - response to salicylic acid stimulus, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0042542 - response to hydrogen peroxide, GO:0033180 - proton-transporting V-type ATPase, V1 domain, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0010162 - seed dormancy, GO:0009737 - response to abscisic acid stimulus, GO:0010150 - leaf senescence, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000249 - leaf senescence, TO:0000063 - mimic response, TO:0000253 - seed dormancy, TO:0000615 - abscisic acid sensitivity, TO:0000495 - chlorophyll content, TO:0001018 - transpiration rate	PO:0001054 - 4 leaf senescence stage , PO:0025374 - seed dormant stage , PO:0020025 - micropyle 
13343	_	YDA1, OsMKKK10, MKKK10	_	YODA 1, OsYODA-2, YODA-2, MAPK kinase kinase 10	_		4	LOC_Os04g47240. a MAPKK gene involved in the regulation ofstomatal development. a homolog of A. thaliana  YODA. TO:0000970: panicle density. TO:0000847: panicle inflorescence morphology trait.	 Biochemical character,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os04g0559800 	LOC_Os04g47240.3, LOC_Os04g47240.2, LOC_Os04g47240.1				GO:0010103 - stomatal complex morphogenesis, GO:0005524 - ATP binding, GO:0009793 - embryonic development ending in seed dormancy, GO:0010229 - inflorescence development, GO:0004672 - protein kinase activity	TO:0000397 - grain size, TO:0000621 - inflorescence development trait, TO:0000447 - filled grain number	PO:0001083 - inflorescence development stage 
13344	_	OsAP65	_	aspartic protease 65			7		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os07g0592200	LOC_Os07g40260.2, LOC_Os07g40260.1				GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis		
13345	_	OsCDR1	_	CONSTITUTIVE DISEASE RESISTANCE 1			1	A rice homologue of Arabidopsis CDR1.	 Biochemical character	Os01g0178600	LOC_Os01g08330.1				GO:0006508 - proteolysis, GO:0004190 - aspartic-type endopeptidase activity		
13346	_	OsAsp2	_	aspartic protease 2			11		 Biochemical character	Os11g0183900	LOC_Os11g08100.1				GO:0009505 - plant-type cell wall, GO:0006508 - proteolysis, GO:0004190 - aspartic-type endopeptidase activity		
13347	_	OsAsp3	_	aspartic protease 3			12		 Biochemical character	Os12g0177500	LOC_Os12g07780.2, LOC_Os12g07780.1				GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis		
13348	PR1-12	OsPR1#012, OsPR1-12	PATHOGENESIS-RELATED GENE 1-12	pathogenesis-related protein 1-12, PR protein 1-12	PATHOGENESIS-RELATED PROTEIN 1-12		1	LOC_Os01g28500.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0382400	LOC_Os01g28500.1				GO:0005576 - extracellular region	TO:0000175 - bacterial blight disease resistance	
13349	PR1-21	OsPR1#021, OsPR1-21	PATHOGENESIS-RELATED GENE 1-21	pathogenesis-related protein 1-21, PR protein 1-21	PATHOGENESIS-RELATED PROTEIN 1-21		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0786500	LOC_Os02g54540.1				GO:0005576 - extracellular region		
13350	PR1-22	OsPR1#022, OsPR1-22	PATHOGENESIS-RELATED GENE 1-22	pathogenesis-related protein 1-22, PR protein 1-22	PATHOGENESIS-RELATED PROTEIN 1-22		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0786900	LOC_Os02g54560.1				GO:0005576 - extracellular region		
13351	PR1-51	OsPR1#051, OsPR1-51	PATHOGENESIS-RELATED GENE 1-51	pathogenesis-related protein 1-51, PR protein 1-51	PATHOGENESIS-RELATED PROTEIN 1-51		5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0595000	LOC_Os05g51660.1						
13352	PR1-52	OsPR1#052, OsPR1-52	PATHOGENESIS-RELATED GENE 1-52	pathogenesis-related protein 1-52, PR protein 1-52	PATHOGENESIS-RELATED PROTEIN 1-52		5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0595200	LOC_Os05g51680.2, LOC_Os05g51680.1				GO:0005576 - extracellular region		
13353	PR1-71	OsPR1#071, OsPR1-71	PATHOGENESIS-RELATED GENE 1-71	pathogenesis-related protein 1-71, PR protein 1-71	PATHOGENESIS-RELATED PROTEIN 1-71		7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0124900	LOC_Os07g03279.1				GO:0005576 - extracellular region		
13354	PR1-72	OsPR1#072, OsPR1-72, PR1L, OsPR1L	PATHOGENESIS-RELATED GENE 1-72	pathogenesis-related protein 1-72, PR protein 1-72, PR1-like	PATHOGENESIS-RELATED PROTEIN 1-72		7	PR-1a in Katsuragi et al. 2015.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0127500	LOC_Os07g03580.1				GO:0005576 - extracellular region, GO:0002237 - response to molecule of bacterial origin		
13355	PR1-73	OsPR1#073, OsPR1-73	PATHOGENESIS-RELATED GENE 1-73	pathogenesis-related protein 1-73, PR protein 1-73	PATHOGENESIS-RELATED PROTEIN 1-73		7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0127600	LOC_Os07g03590.1, LOC_Os07g03288.1				GO:0005576 - extracellular region		
13356	PR1-101	OsPR1#101, OsPR1-101, OsPR1L2, PR1L2	PATHOGENESIS-RELATED GENE 1-101	pathogenesis-related protein 1-101, PR protein 1-101, pathogenesis-related protein 1 like protein 2	PATHOGENESIS-RELATED PROTEIN 1-101		10	AU070895.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0191300	LOC_Os10g11500.1				GO:0005576 - extracellular region		PO:0009005 - root 
13357	PR1-121	OsPR1#121, OsPR1-121	PATHOGENESIS-RELATED GENE 1-121	pathogenesis-related protein 1-121, PR protein 1-121	PATHOGENESIS-RELATED PROTEIN 1-121		12		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0633400	LOC_Os12g43700.1				GO:0005576 - extracellular region		
13358	CLPP4	OsClpP4, ClpP4, OsClp11, CLP11	CHLOROPLAST PROTEASE 4	plastidic caseinolytic protease 4, chloroplast Clp 4, Clp protease 11	CHLOROPLAST PROTEASE 4		10	LOC_Os10g43050. Clp Protease Family (Peptidase_S14; PF00574). OsClp11 in http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os10g0580800	LOC_Os10g43050.1				GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0009941 - chloroplast envelope, GO:0009658 - chloroplast organization, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0009535 - chloroplast thylakoid membrane, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase		
13359	VYL	OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL	VIRESCENT-YELLOW LEAF	plastidic caseinolytic protease 6, chloroplast Clp 6, Virescent-Yellow Leaf, Clp protease 6, narrow leaf 9	CHLOROPLAST PROTEASE 6	vyl, nal9	3	LOC_Os03g29810. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os03g0411500	LOC_Os03g29810.1				GO:0009534 - chloroplast thylakoid, GO:0009941 - chloroplast envelope, GO:0006508 - proteolysis, GO:0009965 - leaf morphogenesis, GO:0004252 - serine-type endopeptidase activity, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0009658 - chloroplast organization, GO:0015979 - photosynthesis	TO:0000346 - tiller number, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000326 - leaf color, TO:0000370 - leaf width, TO:0000495 - chlorophyll content	
13360	CLPP3	OsClpP3, OsClp2, CLP2	CHLOROPLAST PROTEASE 3	plastidic caseinolytic protease 3, chloroplast Clp 3, Clp protease 2	CHLOROPLAST PROTEASE 3		1	LOC_Os01g32350. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os01g0507900	LOC_Os01g32350.3, LOC_Os01g32350.2, LOC_Os01g32350.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
13361	CLPP5	OsClpP5, ClpP5, OsClp4, CLP4	CHLOROPLAST PROTEASE 5	plastidic caseinolytic protease 5, chloroplast Clp 5, Clp protease 4	CHLOROPLAST PROTEASE 5		3	LOC_Os03g19510. Clp Protease Family (Peptidase_S14; PF00574). OsClp4 in http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os03g0308100	LOC_Os03g19510.1				GO:0009534 - chloroplast thylakoid, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0009941 - chloroplast envelope		
13362	CLPT	OsClpT, ClpT	CHLOROPLAST PROTEASE T	plastidic caseinolytic protease T, chloroplast Clp T	CHLOROPLAST PROTEASE T		3		 Biochemical character	Os03g0247000	LOC_Os03g14280.1				GO:0009941 - chloroplast envelope, GO:0009579 - thylakoid, GO:0009570 - chloroplast stroma, GO:0019538 - protein metabolic process		
13363	CLPP1	OsClpP1, ClpP1	CHLOROPLAST PROTEASE 1	plastidic caseinolytic protease 1, chloroplast Clp 1	CHLOROPLAST PROTEASE 1				 Biochemical character								
13364	RPOA	RpoA	RNA POLYMERASE SUBUNIT A	RNA polymerase subunit A	RNA POLYMERASE SUBUNIT A				 Biochemical character								
13365	PSBA	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1	PHOTOSYSTEM II SUBUNIT PSBA	PSII subunit PsbA, photosystem II subunit PsbA, PSII 32kDa protein, photosystem II protein D1, QB Protein, Photosystem II D1 protein			Pt	P0C433, P0C434. X15901:CAA34007 (Japonica Group chloroplast genome). GU592207:ADD62817 (Japonica Group chloroplast genome).  AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46104: Nip001 (cultivar Nipponbare), AY522331 (isolate PA64S). L40578. M36191. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). DQ789329. PSBD1 in Liu et al. 2018.	 Biochemical character		LOC_Osp1g00110				GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0016491 - oxidoreductase activity, GO:0009523 - photosystem II, GO:0009635 - response to herbicide, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0005506 - iron ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0010206 - photosystem II repair, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid	TO:0000075 - light sensitivity, TO:0000615 - abscisic acid sensitivity	
13366	_	Lhcp2, LhcpII, LchP2	_	light-harvesting protein Lhcp2, light-harvesting complex protein Lhcp2, PSII Lhcp2													
13368	VATPE	v-ATP-E	V-ATPASE SUBUNIT E	vacuolar ATP synthase subunit E	V-ATPASE SUBUNIT E		1		 Biochemical character	Os01g0659200	LOC_Os01g46980.1				GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain, GO:0015991 - ATP hydrolysis coupled proton transport		
13369	CLPR4	OsClpR4, ClpR4, OsClp1, CLP1	CHLOROPLAST PROTEASE R4	plastidic caseinolytic protease R4, chloroplast Clp R4, Clp protease 1	CHLOROPLAST PROTEASE R4		1	LOC_Os01g16530. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os01g0271400	LOC_Os01g16530.1				GO:0009941 - chloroplast envelope, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0009570 - chloroplast stroma		
13370	_	OsSET1, SDG721	_	SET protein 1			1		 Biochemical character	Os01g0218800	LOC_Os01g11952.1				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0008168 - methyltransferase activity, GO:0009294 - DNA mediated transformation		
13371	_	OsSET2, SDG705	_	SET protein 2			1		 Biochemical character	Os01g0655300	LOC_Os01g46700.1				GO:0008168 - methyltransferase activity, GO:0009294 - DNA mediated transformation		
13372	_	OsSET3, SDG729	_	SET protein 3			1		 Biochemical character	Os01g0772150	LOC_Os01g56540.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		
13373	_	OsSET4, SDG709, OsSUVH7	_	SET protein 4, SUVH Histone Methyltransferase 7			1	a rice homolog of Su(var)3-9.	 Biochemical character	Os01g0811300	LOC_Os01g59620.1				GO:0005694 - chromosome, GO:0008270 - zinc ion binding, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus		
13374	_	OsSET6, SDG720	_	SET protein 6			1			Os01g0965500	LOC_Os01g73460.1						
13375	_	OsSET7, SDG730	_	SET protein 7			2		 Biochemical character	Os02g0122700	LOC_Os02g03030.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0006275 - regulation of DNA replication, GO:0009901 - anther dehiscence, GO:0046976 - histone methyltransferase activity (H3-K27 specific), GO:0051726 - regulation of cell cycle		
13376	_	OsSET10, SDG712	_	SET protein 10			2		 Biochemical character	Os02g0621100	LOC_Os02g40770.2, LOC_Os02g40770.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0018024 - histone-lysine N-methyltransferase activity		
13377	_	OsSET11, SDG706	_	SET protein 11			2		 Biochemical character	Os02g0708600	LOC_Os02g47900.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		
13378	_	OsSET12	_	SET protein 12			2		 Biochemical character	Os02g0725200	LOC_Os02g49326.1				GO:0030785 - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity, GO:0009507 - chloroplast		
13379	_	OsSET13	_	SET protein 13			2			Os02g0733800	LOC_Os02g50100.1				GO:0009507 - chloroplast		
13380	_	OsSET14, SDG739	_	SET protein 14			3			Os03g0168700	LOC_Os03g07260.1						
13381	_	OsSET16, SDG713, OsSUVH3	_	SET protein 16, SUVH Histone Methyltransferase 3			3	a rice homolog of Su(var)3-9.	 Biochemical character	Os03g0320400	LOC_Os03g20430.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		
13382	_	OsSET17, SDG716	_	SET protein 17			3			Os03g0704200	LOC_Os03g49730.4, LOC_Os03g49730.3, LOC_Os03g49730.2, LOC_Os03g49730.1				GO:0008270 - zinc ion binding		
13383	_	OsSET18, SDG738	_	SET protein 18			4			Os04g0423600	LOC_Os04g34610.1						
13384	_	OsSET19, SDG708	_	SET protein 19			4		 Biochemical character	Os04g0429100	LOC_Os04g34976.2				GO:0010228 - vegetative to reproductive phase transition, GO:0005634 - nucleus, GO:0034968 - histone lysine methylation, GO:0018024 - histone-lysine N-methyltransferase activity		
13385	_	OsSET20, SDG703, OsSUVH5	_	SET protein 20, SUVH Histone Methyltransferase 5			4	a rice homolog of Su(var)3-9.	 Biochemical character	Os04g0544100	LOC_Os04g45990.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0008270 - zinc ion binding		
13386	_	OsSET21, SDG722	_	SET protein 21			4			Os04g0629100	LOC_Os04g53700.1				GO:0008270 - zinc ion binding		
13387	_	OsSET22, SDG728, OsSUVH8	_	SET protein 22, SUVH Histone Methyltransferase 8			5	a rice homolog of Su(var)3-9.	 Biochemical character	Os05g0490700	LOC_Os05g41172.2, LOC_Os05g41172.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0008270 - zinc ion binding		
13388	_	OsSET23	_	SET protein 23			5			Os05g0587200	LOC_Os05g50980.1				GO:0009508 - plastid chromosome, GO:0009507 - chloroplast		
13389	_	OsSET25, SDG726, OsSUVH2	_	SET protein 25, SUVH Histone Methyltransferase 2			7	a rice homolog of Su(var)3-9.	 Biochemical character	Os07g0435900	LOC_Os07g25450.1				GO:0005694 - chromosome, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		
13390	_	OsSET26, SDG731	_	SET protein 26			7			Os07g0471100	LOC_Os07g28840.1						
13391	_	OsSET27, SDG701	_	SET protein 27, SET DOMAIN GROUP701, SET DOMAIN GROUP 701		sdg701-1	8	LOC_Os08g08210. GO:0099402: plant organ development. TO:0000934: photoperiod-sensitive flowering time trait.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os08g0180100	LOC_Os08g08210.1				GO:0042800 - histone methyltransferase activity (H3-K4 specific), GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0048578 - positive regulation of long-day photoperiodism, flowering	TO:0000592 - 1000-dehulled grain weight, TO:0002616 - flowering time, TO:0000450 - grain yield per panicle	
13392	_	OsSET28, SDG740	_	SET protein 28			8			Os08g0205300	LOC_Os08g10470.2, LOC_Os08g10470.1						
13393	_	OsSET29	_	SET protein 29			8			Os08g0244400	LOC_Os08g14660.1						
13394	_	OsSET30, SDG710, OsSUVH10	_	SET protein 30, SUVH Histone Methyltransferase 10			8	a rice homolog of Su(var)3-9.	 Biochemical character	Os08g0400200	LOC_Os08g30910.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0008270 - zinc ion binding, GO:0005694 - chromosome, GO:0005634 - nucleus		
13395	_	OsSET31, SDG707	_	SET protein 31			8	LOC_Os08g34370.			LOC_Os08g34370						
13396	_	OsSET32, SDG715, OsSUVH9	_	SET protein 32, SUVH Histone Methyltransferase 9			8	a rice homolog of Su(var)3-9.	 Biochemical character	Os08g0565700	LOC_Os08g45130.1				GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0008270 - zinc ion binding		
13397	_	OsSET33, SET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723	_	SET protein 33, Trithorax1, TRITHORAX-like protein OsTrx1, SET domain group protein 723		ostrx1, ostrx1-2, ostrx1-3	9	LOC_Os09g04890. GO:0035556:intracellular signal transduction. an ortholog of Arabidopsis Trithorax protein1 (ATX1). OsTrx1 functions as a negative regulator of Ghd7, independently from Ehd3 and Hd17/Ef7/OsELF3-1 (Choi et al. 2014).	 Biochemical character,  Reproductive organ - Heading date,  Reproductive organ - Panicle, Mode of branching	Os09g0134500	LOC_Os09g04890.1				GO:0010314 - phosphatidylinositol-5-phosphate binding, GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding, GO:0009909 - regulation of flower development, GO:0010093 - specification of floral organ identity, GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0042800 - histone methyltransferase activity (H3-K4 specific), GO:0048574 - long-day photoperiodism, flowering, GO:0006325 - chromatin organization, GO:0005886 - plasma membrane	TO:0002616 - flowering time, TO:0002759 - grain number, TO:0000137 - days to heading, TO:0000557 - secondary branch number, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
13398	_	OsSET35, SDG727, OsSUVH6	_	SET protein 35, SUVH Histone Methyltransferase 6			9	a rice homolog of Su(var)3-9.	 Biochemical character	Os09g0362900	LOC_Os09g19830.1				GO:0008270 - zinc ion binding, GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0018024 - histone-lysine N-methyltransferase activity		
13399	_	OsSET36	_	SET protein 36			9			Os09g0411650	LOC_Os09g24530.1						
13400	_	OsSET37, SDG732	_	SET protein 37			9		 Biochemical character	Os09g0556700	LOC_Os09g38440.1				GO:0034968 - histone lysine methylation, GO:0008270 - zinc ion binding, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus		
13401	_	OsSET38, SDG741	_	SET protein 38			10			Os10g0410700	LOC_Os10g27060.2, LOC_Os10g27060.1						
13402	_	OsSET39	_	SET protein 39			10			Os10g0506800	LOC_Os10g36250.1						
13403	_	OsSET40, SDG733, OsSUVH11	_	SET protein 40, SUVH Histone Methyltransferase 11			11	a rice homolog of Su(var)3-9.	 Biochemical character	Os11g0131600	LOC_Os11g03700.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0008270 - zinc ion binding		
13404	_	OsSET41, SDG704, OsSUVH1	_	SET protein 41, SUVH Histone Methyltransferase 1			11	AF344453. a rice homolog of Su(var)3-9.	 Biochemical character	Os11g0602200	LOC_Os11g38900.1				GO:0005694 - chromosome, GO:0008270 - zinc ion binding, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
13405	_	OsSET42, SET42, SDG734, OsSUVH12, SUVH12	_	SET protein 42, SUVH Histone Methyltransferase 12			12	LOC_Os12g03460 (not found in MSU Rice Genome Annotation Project Release 7 data). a rice homolog of Su(var)3-9.		Os12g0128600					GO:0015031 - protein transport, GO:0005758 - mitochondrial intermembrane space, GO:0046872 - metal ion binding		
13406	_	OsSET43, SDG717	_	SET protein 43			12		 Biochemical character	Os12g0613200	LOC_Os12g41900.1				GO:0008168 - methyltransferase activity, GO:0005634 - nucleus		
13407	MTP8.1	OsMTP8.1	METAL TOLERANCE PROTEIN 8.1	metal tolerance protein 8.1	METAL TOLERANCE PROTEIN 8.1	mtp8.1	3	Q10PP8. Cation Diffusion Facilitator (CDF) family. a tonoplast-localized manganese transporter. a Manganese (Mn) cation diffusion facilitators (Mn-CDFs).  LOC_Os03g12530. GO:0061687: detoxification of inorganic compound. TO:0020091: manganese content. GO:0120127: response to zinc ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0226400	LOC_Os03g12530.1				GO:0006828 - manganese ion transport, GO:0010042 - response to manganese ion, GO:0048316 - seed development, GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010043 - response to zinc ion, GO:0032025 - response to cobalt ion, GO:0008324 - cation transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane, GO:0016021 - integral to membrane, GO:0005384 - manganese ion transmembrane transporter activity, GO:0005774 - vacuolar membrane	TO:0000016 - cobalt sensitivity, TO:0000351 - zinc sensitivity, TO:0000073 - manganese sensitivity	PO:0009006 - shoot system , PO:0001170 - seed development stage , PO:0025034 - leaf 
13408	MTP5	OsMTP5	METAL TOLERANCE PROTEIN 5	metal tolerance protein 5	METAL TOLERANCE PROTEIN 5		2	LOC_Os02g58580. Cation Diffusion Facilitator (CDF) family.	 Tolerance and resistance - Stress tolerance	Os02g0832700	LOC_Os02g58580.5, LOC_Os02g58580.4, LOC_Os02g58580.2, LOC_Os02g58580.1				GO:0032025 - response to cobalt ion, GO:0009624 - response to nematode, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane	TO:0000016 - cobalt sensitivity	PO:0009062 - gynoecium 
13409	MTP6	OsMTP6	METAL TOLERANCE PROTEIN 6	metal tolerance protein 6	METAL TOLERANCE PROTEIN 6		3	LOC_Os03g22550. Q10LJ2. Cation Diffusion Facilitator (CDF) family. GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os03g0346800	LOC_Os03g22550.1				GO:0010043 - response to zinc ion, GO:0032025 - response to cobalt ion, GO:0046686 - response to cadmium ion, GO:0048316 - seed development, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane	TO:0000351 - zinc sensitivity, TO:0000016 - cobalt sensitivity	PO:0001170 - seed development stage 
13410	MTP7	OsMTP7	METAL TOLERANCE PROTEIN 7	metal tolerance protein 7	METAL TOLERANCE PROTEIN 7		4	LOC_Os04g23180. Cation Diffusion Facilitator (CDF) family. GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os04g0298200	LOC_Os04g23180.1				GO:0048316 - seed development, GO:0008324 - cation transmembrane transporter activity, GO:0010043 - response to zinc ion, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane	TO:0000351 - zinc sensitivity	PO:0001170 - seed development stage 
13411	MTP8	OsMTP8, MTP8.2, OsMTP8.2	METAL TOLERANCE PROTEIN 8	metal tolerance protein 8, metal tolerance protein 8.2	METAL TOLERANCE PROTEIN 8	mtp8.2	2	Q6Z7K5. Cation Diffusion Facilitator (CDF) family. a Manganese (Mn) cation diffusion facilitators (Mn-CDFs). LOC_Os02g53490. GO:1990659: sequestering of manganese ion. TO:0020091: manganese content. GO:0061687: detoxification of inorganic compound. MTP8.2 in Takemoto et al. 2017, Tsunemitsu et al. 2018.	 Tolerance and resistance - Stress tolerance	Os02g0775100	LOC_Os02g53490.1				GO:0008324 - cation transmembrane transporter activity, GO:0032025 - response to cobalt ion, GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0005774 - vacuolar membrane, GO:0016021 - integral to membrane, GO:0005384 - manganese ion transmembrane transporter activity, GO:0016020 - membrane, GO:0010042 - response to manganese ion, GO:0048316 - seed development	TO:0000016 - cobalt sensitivity, TO:0000073 - manganese sensitivity	PO:0001170 - seed development stage , PO:0009006 - shoot system , PO:0009005 - root 
13412	MTP9	OsMTP9	METAL TOLERANCE PROTEIN 9	metal tolerance protein 9	METAL TOLERANCE PROTEIN 9		1	Q9LDU0. Cation Diffusion Facilitator (CDF) family. LOC_Os01g03914. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0130000	LOC_Os01g03914.3, LOC_Os01g03914.2, LOC_Os01g03914.1				GO:0010039 - response to iron ion, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0005774 - vacuolar membrane, GO:0010042 - response to manganese ion, GO:0009739 - response to gibberellin stimulus, GO:0048316 - seed development, GO:0006828 - manganese ion transport, GO:0005384 - manganese ion transmembrane transporter activity, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane	TO:0000166 - gibberellic acid sensitivity, TO:0000224 - iron sensitivity, TO:0000073 - manganese sensitivity	PO:0001170 - seed development stage , PO:0005360 - aleurone layer , PO:0005772 - exodermis , PO:0005059 - root endodermis , PO:0009005 - root 
13413	MTP11	OsMTP11	METAL TOLERANCE PROTEIN 11	metal tolerance protein 11	METAL TOLERANCE PROTEIN 11		1	Q5NA18. LOC_Os01g62070. Cation Diffusion Facilitator (CDF) family. a Manganese (Mn) cation diffusion facilitators (Mn-CDFs).	 Tolerance and resistance - Stress tolerance	Os01g0837700/Os01g0837800					GO:0010045 - response to nickel ion, GO:0010043 - response to zinc ion, GO:0010042 - response to manganese ion, GO:0032025 - response to cobalt ion, GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane, GO:0008324 - cation transmembrane transporter activity, GO:0005794 - Golgi apparatus, GO:0046686 - response to cadmium ion	TO:0000080 - micronutrient sensitivity, TO:0000016 - cobalt sensitivity, TO:0000351 - zinc sensitivity, TO:0000073 - manganese sensitivity	PO:0000034 - vascular system 
13414	MTP11.1	OsMTP11.1	METAL TOLERANCE PROTEIN 11.1	metal tolerance protein 11.1	METAL TOLERANCE PROTEIN 11.1		5	LOC_Os05g38670. Q0DHJ5. Cation Diffusion Facilitator (CDF) family. OsMTP11.1 expression is very low in most organs and developmental stages analysed. Additionally, the alignment indicates OsMTP11.1 is lacking transmembrane domain (TMD)  five and thus the xxxxD domain. OsMTP11.1 could therefore be a non-functional genomic sequence, or may have evolved as a pseudogene. (Farthing et al. 2017) a Manganese (Mn) cation diffusion facilitators (Mn-CDFs).	 Tolerance and resistance - Stress tolerance	Os05g0461900	LOC_Os05g38670.1				GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0032025 - response to cobalt ion, GO:0048316 - seed development, GO:0005774 - vacuolar membrane, GO:0046686 - response to cadmium ion	TO:0000016 - cobalt sensitivity	PO:0001170 - seed development stage , PO:0009066 - anther 
13415	MTP12	OsMTP12	METAL TOLERANCE PROTEIN 12	metal tolerance protein 12	METAL TOLERANCE PROTEIN 12		8	LOC_Os08g32650. Q8H329. Cation Diffusion Facilitator (CDF) family. GO:0120127: response to zinc ion starvation. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance	Os08g0422200	LOC_Os08g32650.1				GO:0046686 - response to cadmium ion, GO:0005774 - vacuolar membrane, GO:0032025 - response to cobalt ion, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0010043 - response to zinc ion, GO:0048316 - seed development, GO:0010039 - response to iron ion	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity, TO:0000016 - cobalt sensitivity	PO:0001170 - seed development stage 
13416	ISC1	OsISC1	IRON-SULFUR CLUSTER PROTEIN 1	Iron-sulfur cluster protein 1	IRON-SULFUR CLUSTER PROTEIN 1		9		 Biochemical character	Os09g0338400	LOC_Os09g16910.3, LOC_Os09g16910.2, LOC_Os09g16910.1				GO:0005524 - ATP binding, GO:0031071 - cysteine desulfurase activity, GO:0030170 - pyridoxal phosphate binding, GO:0016226 - iron-sulfur cluster assembly, GO:0008270 - zinc ion binding, GO:0006534 - cysteine metabolic process, GO:0005739 - mitochondrion		
13417	ISC2	OsISC2	IRON-SULFUR CLUSTER PROTEIN 2	Iron-sulfur cluster protein 2	IRON-SULFUR CLUSTER PROTEIN 2		12		 Biochemical character	Os12g0287300	LOC_Os12g18900.1				GO:0009507 - chloroplast, GO:0006790 - sulfur metabolic process, GO:0009000 - selenocysteine lyase activity, GO:0030170 - pyridoxal phosphate binding, GO:0018283 - iron incorporation into metallo-sulfur cluster, GO:0001887 - selenium metabolic process, GO:0010269 - response to selenium ion		
13418	ISC3	OsISC3	IRON-SULFUR CLUSTER PROTEIN 3	Iron-sulfur cluster protein 3	IRON-SULFUR CLUSTER PROTEIN 3		9			Os09g0270900	LOC_Os09g09790.1						
13419	ISC4	OsISC4	IRON-SULFUR CLUSTER PROTEIN 4	Iron-sulfur cluster protein 4	IRON-SULFUR CLUSTER PROTEIN 4		3			Os03g0219500	LOC_Os03g11990.3, LOC_Os03g11990.2, LOC_Os03g11990.1						
13420	ISC5	OsISC5	IRON-SULFUR CLUSTER PROTEIN 5	Iron-sulfur cluster protein 5	IRON-SULFUR CLUSTER PROTEIN 5		5			Os05g0568100	LOC_Os05g49300.1				GO:0005506 - iron ion binding, GO:0005739 - mitochondrion, GO:0051536 - iron-sulfur cluster binding, GO:0016226 - iron-sulfur cluster assembly		
13421	ISC6	OsISC6	IRON-SULFUR CLUSTER PROTEIN 6	Iron-sulfur cluster protein 6	IRON-SULFUR CLUSTER PROTEIN 6		1			Os01g0662600	LOC_Os01g47340.2, LOC_Os01g47340.1				GO:0051536 - iron-sulfur cluster binding, GO:0005506 - iron ion binding, GO:0016226 - iron-sulfur cluster assembly		
13422	ISC7	OsISC7	IRON-SULFUR CLUSTER PROTEIN 7	Iron-sulfur cluster protein 7	IRON-SULFUR CLUSTER PROTEIN 7		6			Os06g0146400	LOC_Os06g05400.1				GO:0051536 - iron-sulfur cluster binding, GO:0005198 - structural molecule activity, GO:0009570 - chloroplast stroma, GO:0016226 - iron-sulfur cluster assembly		
13423	ISC8	OsISC8	IRON-SULFUR CLUSTER PROTEIN 8	Iron-sulfur cluster protein 8	IRON-SULFUR CLUSTER PROTEIN 8		12			Os12g0485500	LOC_Os12g30030.2, LOC_Os12g30030.1				GO:0016226 - iron-sulfur cluster assembly, GO:0005198 - structural molecule activity, GO:0051536 - iron-sulfur cluster binding		
13424	ISC9	OsISC9	IRON-SULFUR CLUSTER PROTEIN 9	Iron-sulfur cluster protein 9	IRON-SULFUR CLUSTER PROTEIN 9		1			Os01g0105800	LOC_Os01g01610.1				GO:0005198 - structural molecule activity, GO:0016226 - iron-sulfur cluster assembly, GO:0051536 - iron-sulfur cluster binding		
13425	ISC10	OsISC10	IRON-SULFUR CLUSTER PROTEIN 10	Iron-sulfur cluster protein 10	IRON-SULFUR CLUSTER PROTEIN 10		8			Os08g0369700	LOC_Os08g28230.1				GO:0051536 - iron-sulfur cluster binding, GO:0016226 - iron-sulfur cluster assembly, GO:0005198 - structural molecule activity		
13426	ISC11	OsISC11	IRON-SULFUR CLUSTER PROTEIN 11	Iron-sulfur cluster protein 11	IRON-SULFUR CLUSTER PROTEIN 11		3			Os03g0314700	LOC_Os03g20010.2, LOC_Os03g20010.1				GO:0009507 - chloroplast, GO:0005506 - iron ion binding, GO:0016226 - iron-sulfur cluster assembly, GO:0051536 - iron-sulfur cluster binding		
13427	ISC12	OsISC12	IRON-SULFUR CLUSTER PROTEIN 12	Iron-sulfur cluster protein 12	IRON-SULFUR CLUSTER PROTEIN 12		11			Os11g0181500	LOC_Os11g07916.1				GO:0016226 - iron-sulfur cluster assembly, GO:0051536 - iron-sulfur cluster binding, GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization		
13428	ISC13	OsISC13	IRON-SULFUR CLUSTER PROTEIN 13	Iron-sulfur cluster protein 13	IRON-SULFUR CLUSTER PROTEIN 13		6			Os06g0694500	LOC_Os06g47940.1				GO:0051536 - iron-sulfur cluster binding, GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0016226 - iron-sulfur cluster assembly		
13429	ISC14	OsISC14	IRON-SULFUR CLUSTER PROTEIN 14	Iron-sulfur cluster protein 14	IRON-SULFUR CLUSTER PROTEIN 14		12	Q84LK7.		Os12g0176200	LOC_Os12g07700.1				GO:0016226 - iron-sulfur cluster assembly, GO:0009658 - chloroplast organization, GO:0051536 - iron-sulfur cluster binding, GO:0009570 - chloroplast stroma, GO:0005506 - iron ion binding		
13430	ISC15	OsISC15	IRON-SULFUR CLUSTER PROTEIN 15	Iron-sulfur cluster protein 15	IRON-SULFUR CLUSTER PROTEIN 15		5			Os05g0155300	LOC_Os05g06330.1				GO:0016226 - iron-sulfur cluster assembly, GO:0005506 - iron ion binding, GO:0005507 - copper ion binding, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0051536 - iron-sulfur cluster binding		
13431	ISC19	OsISC19	IRON-SULFUR CLUSTER PROTEIN 19	Iron-sulfur cluster protein 19	IRON-SULFUR CLUSTER PROTEIN 19		9			Os09g0437900	LOC_Os09g26650.1				GO:0046872 - metal ion binding, GO:0009055 - electron carrier activity, GO:0051537 - 2 iron, 2 sulfur cluster binding		
13432	ISC20	OsISC20	IRON-SULFUR CLUSTER PROTEIN 20	Iron-sulfur cluster protein 20	IRON-SULFUR CLUSTER PROTEIN 20		7			Os07g0110300	LOC_Os07g01930.1				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0009055 - electron carrier activity, GO:0048868 - pollen tube development		
13433	ISC21	OsISC21	IRON-SULFUR CLUSTER PROTEIN 21	Iron-sulfur cluster protein 21	IRON-SULFUR CLUSTER PROTEIN 21		2		 Biochemical character	Os02g0277600	LOC_Os02g17700.1				GO:0016491 - oxidoreductase activity, GO:0005759 - mitochondrial matrix, GO:0005886 - plasma membrane		
13434	ISC22	OsISC22	IRON-SULFUR CLUSTER PROTEIN 22	Iron-sulfur cluster protein 22	IRON-SULFUR CLUSTER PROTEIN 22		1		 Biochemical character	Os01g0783600	LOC_Os01g57460.1				GO:0009060 - aerobic respiration, GO:0008199 - ferric iron binding, GO:0005739 - mitochondrion, GO:0016226 - iron-sulfur cluster assembly, GO:0004322 - ferroxidase activity, GO:0042542 - response to hydrogen peroxide		
13435	ISC23	OsISC23	IRON-SULFUR CLUSTER PROTEIN 23	Iron-sulfur cluster protein 23, Heat-shock protein homolog dnaK protein	IRON-SULFUR CLUSTER PROTEIN 23		2	D15740.		Os02g0774300	LOC_Os02g53420.1				GO:0006457 - protein folding, GO:0005524 - ATP binding		
13436	ISC24	OsISC24	IRON-SULFUR CLUSTER PROTEIN 24	Iron-sulfur cluster protein 24	IRON-SULFUR CLUSTER PROTEIN 24		3			Os03g0113700	LOC_Os03g02260.1				GO:0006457 - protein folding, GO:0006950 - response to stress, GO:0005524 - ATP binding		
13437	ISC35	OsISC35	IRON-SULFUR CLUSTER PROTEIN 35	Iron-sulfur cluster protein 35	IRON-SULFUR CLUSTER PROTEIN 35		3		 Biochemical character	Os03g0206300	LOC_Os03g10850.2, LOC_Os03g10850.1				GO:0016972 - thiol oxidase activity		
13438	ISC36	OsISC36	IRON-SULFUR CLUSTER PROTEIN 36	Iron-sulfur cluster protein 36	IRON-SULFUR CLUSTER PROTEIN 36		1			Os01g0719700	LOC_Os01g52170.1				GO:0005524 - ATP binding		
13439	ISC37	OsISC37	IRON-SULFUR CLUSTER PROTEIN 37	Iron-sulfur cluster protein 37	IRON-SULFUR CLUSTER PROTEIN 37		3			Os03g0627300	LOC_Os03g42880.1						
13440	ISC38	OsISC38	IRON-SULFUR CLUSTER PROTEIN 38	Iron-sulfur cluster protein 38	IRON-SULFUR CLUSTER PROTEIN 38		3			Os03g0748700	LOC_Os03g53750.2, LOC_Os03g53750.1						
13441	ISC39	OsISC39	IRON-SULFUR CLUSTER PROTEIN 39	Iron-sulfur cluster protein 39	IRON-SULFUR CLUSTER PROTEIN 39		4			Os04g0615500	LOC_Os04g52520.4, LOC_Os04g52520.3, LOC_Os04g52520.2, LOC_Os04g52520.1				GO:0003723 - RNA binding		
13442	ISC40	OsISC40	IRON-SULFUR CLUSTER PROTEIN 40	Iron-sulfur cluster protein 40	IRON-SULFUR CLUSTER PROTEIN 40		4			Os04g0628000	LOC_Os04g53612.1				GO:0003723 - RNA binding		
13443	ISC41	OsISC41	IRON-SULFUR CLUSTER PROTEIN 41	Iron-sulfur cluster protein 41	IRON-SULFUR CLUSTER PROTEIN 41		2			Os02g0732900	LOC_Os02g50010.1				GO:0003723 - RNA binding		
13444	ISC42	OsISC42	IRON-SULFUR CLUSTER PROTEIN 42	Iron-sulfur cluster protein 42	IRON-SULFUR CLUSTER PROTEIN 42		8			Os08g0323400	LOC_Os08g23410.1				GO:0009535 - chloroplast thylakoid membrane, GO:0005506 - iron ion binding		
13445	ISC43	OsISC43	IRON-SULFUR CLUSTER PROTEIN 43	Iron-sulfur cluster protein 43	IRON-SULFUR CLUSTER PROTEIN 43		2			Os02g0601100	LOC_Os02g38900.1				GO:0051536 - iron-sulfur cluster binding, GO:0005829 - cytosol		
13446	ISC44	OsISC44	IRON-SULFUR CLUSTER PROTEIN 44	Iron-sulfur cluster protein 44	IRON-SULFUR CLUSTER PROTEIN 44		4			Os04g0485400	LOC_Os04g40880.3, LOC_Os04g40880.2, LOC_Os04g40880.1						
13447	_	OsHSBP1	_	HSF-binding protein 1			9	BE040146.	 Tolerance and resistance - Stress tolerance	Os09g0375100	LOC_Os09g20830.5, LOC_Os09g20830.4, LOC_Os09g20830.3						
13448	_	OsHSBP2	_	HSF-binding protein 2			6	AU075659.	 Tolerance and resistance - Stress tolerance	Os06g0274000	LOC_Os06g16270.1				GO:0006950 - response to stress		
13449	_	OsPOD, prx11, Osprx11	_	peroxidase, class III peroxidase 11			1	LOC_Os01g19020. BN000540.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0294700	LOC_Os01g19020.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
13450	BIPP2C1	OsBIPP2C1, OsPP45, PP45	BTH-INDUCED PROTEIN PHOSPHATASE 2C 1	Protein phosphatase 45, BTH-induced protein phosphatase 2C 1	BTH-INDUCED PROTEIN PHOSPHATASE 2C 1		3	AY603974, BI118687. Q6J2K6. Q10QL5. a protein phosphatase 2C induced by benzothiadiazole (BTH).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0192500	LOC_Os03g09220.1, LOC_Os03g09220.6, LOC_Os03g09220.5, LOC_Os03g09220.4, LOC_Os03g09220.3, LOC_Os03g09220.2				GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0008152 - metabolic process	TO:0000615 - abscisic acid sensitivity	
13452	EAT1	OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD	ETERNAL TAPETUM 1	ETERNAL TAPETUM1, basic helix-loop-helix protein 141, DELAYED TAPETUM DEGENERATION 1, delayed tapetum degeneration		eat1, eat1-1, eat1-2, eat1-3, dtd	4	a basic helix-loop-helix transcription factor. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os04g0599300	LOC_Os04g51070.1				GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat, GO:0009555 - pollen development, GO:0010234 - tapetal cell fate specification, GO:0048653 - anther development, GO:0048654 - anther morphogenesis, GO:0005634 - nucleus, GO:0048657 - tapetal cell differentiation	TO:0000259 - heat tolerance, TO:0000437 - male sterility	PO:0009049 - inflorescence , PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
13453	_	OsAP25, Radc1, AP25	_	aspartic protease 25, rice anther down-regulated by chilling 1			3	AB122090. AU172968, AU166209, AU174285, AU174286.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0186900	LOC_Os03g08790.1				GO:0048046 - apoplast, GO:0009505 - plant-type cell wall, GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis, GO:0012501 - programmed cell death	TO:0000432 - temperature response trait	
13454	AP37 	OsAP37	ASPARTIC PROTEASE 37	aspartic protease 37, E. coli cation transport protein ChaC homolog	ASPARTIC PROTEASE 37		4	D24715, AU173362.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0448500	LOC_Os04g37570.1				GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis, GO:0012501 - programmed cell death, GO:0048653 - anther development	TO:0000432 - temperature response trait	PO:0001004 - anther development stage 
13455	_	OsAP19	_	aspartic protease 19			2		 Biochemical character	Os02g0473200	LOC_Os02g27360.2, LOC_Os02g27360.1				GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis		
13456	GPX1	OsGpx1, GPX1, OsGPx01, OsGPX1	GLUTATHIONE PEROXIDASE 1	glutathione peroxidase 1	GLUTATHIONE PEROXIDASE 1		4	LOC_Os04g46960.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root,  Seed,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0556300	LOC_Os04g46960.4, LOC_Os04g46960.3, LOC_Os04g46960.2, LOC_Os04g46960.1				GO:0005739 - mitochondrion, GO:0004602 - glutathione peroxidase activity, GO:0010332 - response to gamma radiation, GO:0048364 - root development, GO:0006979 - response to oxidative stress, GO:0010109 - regulation of photosynthesis, GO:0009651 - response to salt stress, GO:0045454 - cell redox homeostasis	TO:0000605 - hydrogen peroxide content, TO:0000656 - root development trait, TO:0000445 - seed number, TO:0000207 - plant height, TO:0000429 - salt sensitivity, TO:0000456 - spikelet number	PO:0007520 - root development stage 
13457	EIF4A2	eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23	EUKARYOTIC INITIATION FACTOR 4A-2	eukaryotic initiation factor 4A-2, eukaryotic initiation factor 4A, RNA helicase 23. Eukaryotic initiation factor 4A-3	EUKARYOTIC INITIATION FACTOR 4A-2		2	AB046414, AB046415. Q6Z2Z4. an ATP-Dependent RNA Helicase. eIF4A-3 in Xu et al. 2015, Sim et al. 2018. DEAD-box RNA helicase protein. LOC_Os02g05330.	 Biochemical character	Os02g0146600	LOC_Os02g05330.1				GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0009505 - plant-type cell wall, GO:0008026 - ATP-dependent helicase activity, GO:0006413 - translational initiation, GO:0005829 - cytosol, GO:0005730 - nucleolus, GO:0005524 - ATP binding, GO:0003743 - translation initiation factor activity		
13458	_	OsMED15_1, MED15_1, OsKIX_3, KIX_3	_	KIX domain protein 3, Mediator 15_1			4	an ortholog of MED15. LOC_Os04g03860.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Other	Os04g0127800	LOC_Os04g03860.1				GO:0003712 - transcription cofactor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048316 - seed development	TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
13459	_	OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118	_	KIX domain protein 5, F-box protein 270, F-box protein 419, endosperm-specific gene 118			8	LOC_Os08g09700. OsFBX270 in Thakur et al. 2013. Os_F0547 ih Hua et al. 2011.		Os08g0196900	LOC_Os08g09700.2, LOC_Os08g09700.1						
13460	_	OsFBX283, OsKIX_6, OsFbox434, Os_F0157	_	KIX domain protein 6, F-box protein 283, F-box protein 434			8	LOC_Os08g18000. OsFBX283 in Thakur et al. 2013. Os_F0157 in Hua et al. 2011.		Os08g0281600	LOC_Os08g18000.1						
13461	_	OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121	_	KIX domain protein 7, F-box protein 289, F-box protein 442, endosperm-specific gene 121			8	LOC_Os08g28940. OsFBX289 in Thakur et al. 2013. Os_F0407 in Hua et al. 2011.		Os08g0377100	LOC_Os08g28940.1						
13462	_	OsKIX_8	_	KIX domain protein 8			8	LOC_Os08g28960.			LOC_Os08g28960						
13463	_	OsKIX_9	_	KIX domain protein 9			8			Os08g0523600	LOC_Os08g41210.4, LOC_Os08g41210.3, LOC_Os08g41210.2, LOC_Os08g41210.1						
13464	_	OsMED15_2, OsKIX_10, MED15_2, KIX_10	_	KIX domain protein 10, Mediator 15_2			8	an ortholog of MED15. LOC_Os08g45080.	 Other	Os08g0564800	LOC_Os08g45080.1				GO:0003712 - transcription cofactor activity, GO:0006355 - regulation of transcription, DNA-dependent		
13465	_	OsKIX_11	_	KIX domain protein 11			12			Os12g0245100	LOC_Os12g14150.1						
13466	_	OsHOS1, HOS1	_	high expression of osmotically responsive gene 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1, HIGH OSMOTICALLY RESPONSIVE GENE 1			3	E3-ubiquitin ligase. JQ866627.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0737100/Os03g0737200					GO:0040008 - regulation of growth, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016874 - ligase activity, GO:0001966 - thigmotaxis, GO:0009409 - response to cold, GO:0009612 - response to mechanical stimulus, GO:0050793 - regulation of developmental process	TO:0002710 - root shape, TO:0000303 - cold tolerance	
13467	_	OsRZ1	_	zinc finger-containing glycine-rich RNA-binding protein 1			3		 Tolerance and resistance - Stress tolerance	Os03g0836200	LOC_Os03g61990.5, LOC_Os03g61990.4, LOC_Os03g61990.3, LOC_Os03g61990.2, LOC_Os03g61990.1				GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0009631 - cold acclimation		
13468	_	OsRZ2	_	zinc finger-containing glycine-rich RNA-binding protein 2			7	OsRZ2 possesses RNA chaperone activity.	 Tolerance and resistance - Stress tolerance	Os07g0187300	LOC_Os07g08960.1				GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0005730 - nucleolus		
13469	_	OsRZ3	_	zinc finger-containing glycine-rich RNA-binding protein 3			3		 Tolerance and resistance - Stress tolerance	Os03g0681900	LOC_Os03g47800.1				GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0005730 - nucleolus, GO:0003676 - nucleic acid binding		
13470	_	OsFWL1	_	FW2.2-like 1			2			Os02g0763000	LOC_Os02g52550.1						
13471	_	OsFWL2	_	FW2.2-like 2			2			Os02g0579800	LOC_Os02g36940.1						
13472	_	OsFWL3, FWL3	_	FW2.2-like 3, fruit-weight 2.2-like 3		osfwl3	2	LOC_Os02g36950. homologous to the tomato fruit-weight 2.2.	 Tolerance and resistance - Stress tolerance	Os02g0580000	LOC_Os02g36950.2, LOC_Os02g36950.1				GO:0046686 - response to cadmium ion	TO:0000080 - micronutrient sensitivity	
13473	_	OsFWL4, FWL4	_	FW2.2-like 4, fruit-weight 2.2-like 4			3	LOC_Os03g61440. TO:1000056: shoot system cadmium content.	 Tolerance and resistance - Stress tolerance	Os03g0829900	LOC_Os03g61440.1				GO:0015691 - cadmium ion transport, GO:0046686 - response to cadmium ion	TO:0000080 - micronutrient sensitivity	
13474	_	OsFWL5, FWL5, OsPcr1, PCR1, OsPCR1	_	FW2.2-like 5, fruit-weight 2.2-like 5, Plant cadmium resistance 1		osfwl5, ospcr1	10	LOC_Os10g02300. AAK52582. rice AtPcr homolog. PLAC8 domain containing protein family. homologous to the tomato fruit-weight 2.2. TO:0006053: zinc concentration. TO:0006059: cadmium concentration. Cd transporter.	 Seed - Morphological traits,  Tolerance and resistance - Stress tolerance	Os10g0112100	LOC_Os10g02300.3, LOC_Os10g02300.2, LOC_Os10g02300.1				GO:0046686 - response to cadmium ion, GO:0055065 - metal ion homeostasis, GO:0010043 - response to zinc ion, GO:0005886 - plasma membrane, GO:0015691 - cadmium ion transport	TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000080 - micronutrient sensitivity, TO:0000351 - zinc sensitivity	
13475	_	OsFWL6, FWL6	_	FW2.2-like 6, fruit-weight 2.2-like 6			3	LOC_Os03g61470. homologous to the tomato fruit-weight 2.2.	 Tolerance and resistance - Stress tolerance	Os03g0830200	LOC_Os03g61470.1				GO:0046686 - response to cadmium ion	TO:0000080 - micronutrient sensitivity	
13476	_	OsFWL7, FWL7	_	FW2.2-like 7, fruit-weight 2.2-like 7			3	LOC_Os03g61500. homologous to the tomato fruit-weight 2.2.	 Tolerance and resistance - Stress tolerance	Os03g0830500	LOC_Os03g61500.1				GO:0046686 - response to cadmium ion	TO:0000080 - micronutrient sensitivity	
13477	_	OsFWL8, FWL8	_	FW2.2-like 8, fruit-weight 2.2-like 8			3	LOC_Os03g61480. homologous to the tomato fruit-weight 2.2.	 Tolerance and resistance - Stress tolerance	Os03g0830300	LOC_Os03g61480.1				GO:0046686 - response to cadmium ion	TO:0000080 - micronutrient sensitivity	
13478	_	MAP3K6	_	MAPK KINASE KINASE6			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0699500	LOC_Os01g50410.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13479	_	OsSUV3, SUV3	_	SUV3 helicase, suppressor of Var 3			3	an NTP-dependent RNA/DNA helicase. a subunit of the degradosome complex. GQ982584.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0746500 	LOC_Os03g53500.1				GO:0005739 - mitochondrion, GO:0008094 - DNA-dependent ATPase activity, GO:0005524 - ATP binding, GO:0008186 - RNA-dependent ATPase activity, GO:0004004 - ATP-dependent RNA helicase activity, GO:0010501 - RNA secondary structure unwinding, GO:0071025 - RNA surveillance, GO:0032508 - DNA duplex unwinding, GO:0003678 - DNA helicase activity, GO:0016070 - RNA metabolic process, GO:0009561 - megagametogenesis, GO:0003676 - nucleic acid binding, GO:0009555 - pollen development, GO:0009651 - response to salt stress, GO:0010043 - response to zinc ion, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance, TO:0000351 - zinc sensitivity	
13480	OXO2	Osoxo4, OsOxO2, OsGLP3-4, GLP3-4	OXALATE OXIDASE 2	oxalate oxidase 4, oxalate oxidase 2, german-like protein 3-4	OXALATE OXIDASE 2		3	Q851J9. OsOxO4 in Molla et al. 2013.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0693800 	LOC_Os03g48760.1				GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast		
13481	_	HEN1, Os-HEN1	_	HUA1 ENHANCER1		Os-hen1-3, waf1-1, waf1-2		methyltransferase.	 Biochemical character								
13482	_	OsGCS, GCS, gamma-ECS/GCS, gamma-ECS	_	glutamylcysteine synthetase, gamma-glutamylcysteine synthetase		osgcs-2, osgcs-3			 Biochemical character								
13483	_	OsDET1	_	DE-ETIOLATED1			1	GQ898934, CT831157.	 Coloration - Chlorophyll	Os01g0104600 	LOC_Os01g01484.5, LOC_Os01g01484.4, LOC_Os01g01484.2, LOC_Os01g01484.1						
13484	CTHSP70-1	OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6	CYTOSOLIC HEAT SHOCK PROTEIN 70-1	cytosolic HSP70-1, cytosolic heat shock protein 70-1, heat-shock protein cognate 70, Mediator 37_6	CYTOSOLIC HEAT SHOCK PROTEIN 70-1		5	D22906. LOC_Os05g38530.	 Tolerance and resistance - Stress tolerance	Os05g0460000	LOC_Os05g38530.1				GO:0009615 - response to virus, GO:0005524 - ATP binding		
13485	EXPA8	OsEXPA8, OsEXP8, osaEXPa1.17	ALPHA-EXPANSIN 8	Expansin-A8, Alpha-expansin-8	ALPHA-EXPANSIN 8		1	Q9XHX0. GO:0090548: response to nitrate starvation.	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os01g0248900	LOC_Os01g14650.1				GO:0048364 - root development, GO:0016020 - membrane, GO:0048767 - root hair elongation, GO:0016036 - cellular response to phosphate starvation, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0009651 - response to salt stress	TO:0000656 - root development trait, TO:0001013 - lateral root number, TO:0000207 - plant height, TO:0002665 - root hair length, TO:0006001 - salt tolerance, TO:0000227 - root length	PO:0009005 - root , PO:0009006 - shoot system , PO:0007520 - root development stage 
13486	_	OsMPS	_	MULTIPASS			2	a rice R2R3-type MYB transcription factor. R2R3-MYB.	 Tolerance and resistance - Stress tolerance	Os02g0618400	LOC_Os02g40530.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
13487	LAC15	OsLAC, OsLAC15, OsLAC13, LAC13	LACCASE 15	lactase 15, laccase-13, laccase 13	LACCASE 15	lac13	5	a laccase-like protein. laccase-like multicopper oxidase. LMCO. LOC_Os05g38420. P0DKK6. GO:0052716: hydroquinone:oxygen oxidoreductase activity. OsLAC13 in Yu et al. 2017. GO: 2000762: regulation of phenylpropanoid metabolic process.	 Biochemical character,  Character as QTL - Yield and productivity	Os05g0458600	LOC_Os05g38420.1				GO:0048046 - apoplast, GO:0010821 - regulation of mitochondrion organization, GO:0008643 - carbohydrate transport, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0052386 - cell wall thickening, GO:0046274 - lignin catabolic process, GO:0009698 - phenylpropanoid metabolic process, GO:0009414 - response to water deprivation, GO:0005507 - copper ion binding	TO:0000180 - spikelet fertility	PO:0009030 - carpel , PO:0009038 - palea , PO:0009037 - lemma , PO:0009066 - anther 
13488	_	OsLTPG1, OsLTPg1	_	GPI-anchored non-specific lipid transfer protein 1, type G nsLTP 1, type G non-specific lipid transfer protein 1			1			Os01g0814100/Os01g0814150							
13489	_	OsLTPG2, OsLTPg2, LTPL82	_	GPI-anchored non-specific lipid transfer protein 2, type G nsLTP 2, type G non-specific lipid transfer protein 2			3	LOC_Os03g07100. LTPL82 in Huang et al. 2016.	 Biochemical character	Os03g0167000	LOC_Os03g07100.1				GO:0008233 - peptidase activity, GO:0008289 - lipid binding, GO:0006869 - lipid transport		
13490	_	OsLTPG3, OsLTPg3	_	GPI-anchored non-specific lipid transfer protein 3, type G nsLTP 3, type G non-specific lipid transfer protein 3			3			Os03g0192600	LOC_Os03g09230.2, LOC_Os03g09230.1						
13491	_	OsLTPG4, OsLTPg4	_	GPI-anchored non-specific lipid transfer protein 4, type G nsLTP 4, type G non-specific lipid transfer protein 4			3			Os03g0323900	LOC_Os03g20760.1						
13492	_	OsLTPG5, OsLTPg5	_	GPI-anchored non-specific lipid transfer protein 5, type G nsLTP 5, type G non-specific lipid transfer protein 5			3			Os03g0385100	LOC_Os03g26800.1						
13493	_	OsLTPG7, OsLTPg7	_	GPI-anchored non-specific lipid transfer protein 7, type G nsLTP 7, type G non-specific lipid transfer protein 7			3	LOC_Os03g57970. AK061537.	 Tolerance and resistance - Stress tolerance	Os03g0793800	LOC_Os03g57970.2, LOC_Os03g57970.1				GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
13494	_	OsLTPG8, OsLTPg8	_	GPI-anchored non-specific lipid transfer protein 8, type G nsLTP 8, type G non-specific lipid transfer protein 8			3			Os03g0793900	LOC_Os03g57980.1						
13495	_	OsLTPG9, OsLTPg9	_	GPI-anchored non-specific lipid transfer protein 9, type G nsLTP 9, type G non-specific lipid transfer protein 9			3			Os03g0794000	LOC_Os03g57990.1						
13496	_	OsLTPG10, OsLTPg10, LTPL83	_	GPI-anchored non-specific lipid transfer protein 10, type G nsLTP 10, type G non-specific lipid transfer protein 10			3	LOC_Os03g58940. LTPL83 in Huang et al. 2016.	 Biochemical character	Os03g0804200	LOC_Os03g58940.1				GO:0006869 - lipid transport, GO:0008289 - lipid binding, GO:0008233 - peptidase activity		
13497	_	OsLTPG11, OsLTPg11	_	GPI-anchored non-specific lipid transfer protein 11, type G nsLTP 11, type G non-specific lipid transfer protein 11			4			Os04g0462200	LOC_Os04g38840.1						
13498	_	OsLTPG12, OsLTPg12	_	GPI-anchored non-specific lipid transfer protein 12, type G nsLTP 12, type G non-specific lipid transfer protein 12			5			Os05g0489200	LOC_Os05g41030.1						
13499	_	OsLTPG13, OsLTPg13	_	GPI-anchored non-specific lipid transfer protein 13, type G nsLTP 13, type G non-specific lipid transfer protein 13			6			Os06g0686400	LOC_Os06g47200.3, LOC_Os06g47200.2, LOC_Os06g47200.1						
13500	_	OsLTPG15, OsLTPg15	_	GPI-anchored non-specific lipid transfer protein 15, type G nsLTP 15, type G non-specific lipid transfer protein 15			7			Os07g0175000	LOC_Os07g07870.1						
13501	_	OsLTPG16, OsLTPg16	_	GPI-anchored non-specific lipid transfer protein 16, type G nsLTP 16, type G non-specific lipid transfer protein 16			7			Os07g0174900	LOC_Os07g07860.1						
13502	_	OsLTPG17, OsLTPg17	_	GPI-anchored non-specific lipid transfer protein 17, type G nsLTP 17, type G non-specific lipid transfer protein 17			7			Os07g0175500	LOC_Os07g07920.1						
13503	_	OsLTPG18, OsLTPg18	_	GPI-anchored non-specific lipid transfer protein 18, type G nsLTP 18, type G non-specific lipid transfer protein 18			7			Os07g0175600	LOC_Os07g07930.1						
13504	_	OsLTPG19, OsLTPg19	_	GPI-anchored non-specific lipid transfer protein 19, type G nsLTP 19, type G non-specific lipid transfer protein 19			7			Os07g0198300	LOC_Os07g09970.1						
13505	_	OsLTPG20, OsLTPg20	_	GPI-anchored non-specific lipid transfer protein 20, type G nsLTP 20, type G non-specific lipid transfer protein 20			7			Os07g0489000	LOC_Os07g30590.1						
13506	_	OsLTPG22, OsLTPg22	_	GPI-anchored non-specific lipid transfer protein 22, type G nsLTP 22, type G non-specific lipid transfer protein 22			8			Os08g0532800	LOC_Os08g42040.2, LOC_Os08g42040.1						
13507	_	OsLTPG23, OsLTPg23	_	GPI-anchored non-specific lipid transfer protein 23, type G nsLTP 23, type G non-specific lipid transfer protein 23			11			Os11g0583100	LOC_Os11g37320.1						
13508	_	OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1	_	GPI-anchored non-specific lipid transfer protein 24, type G nsLTP 24, type G non-specific lipid transfer protein 24			6	AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.		Os06g0711900	LOC_Os06g49770.2, LOC_Os06g49770.1						
13509	_	OsLTPG26	_	GPI-anchored non-specific lipid transfer protein 26, type G nsLTP 26			6			Os03g0664400	LOC_Os03g46150.2, LOC_Os03g46150.1						
13510	_	OsLTP1.1, T42, OsLtp1.1, LTP1.1	_	non-specific lipid transfer protein 1.1, lipid transfer protein 1.1, type 1 non-specific lipid transfer protein 1			1		 Tolerance and resistance - Stress tolerance	Os01g0219500	LOC_Os01g12020.1					TO:0000432 - temperature response trait	PO:0009066 - anther 
13511	_	OsLTP1.2, OsLtpI.2	_	non-specific lipid transfer protein 1.2, lipid transfer protein 1.2, type 1 non-specific lipid transfer protein 2			1	LOC_Os01g60740.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0822900	LOC_Os01g60740.1				GO:0009611 - response to wounding, GO:0006869 - lipid transport, GO:0008289 - lipid binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009009 - plant embryo 
13512	_	OsLTP1.3, OsLtpI.3	_	non-specific lipid transfer protein 1.3, lipid transfer protein 1.3, type 1 non-specific lipid transfer protein 3			3	LOC_Os03g59380.	 Biochemical character	Os03g0808500	LOC_Os03g59380.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport		PO:0009066 - anther 
13513	_	OsLTP1.4, OsLtpI.4	_	non-specific lipid transfer protein 1.4, lipid transfer protein 1.4, type 1 non-specific lipid transfer protein 4			5	LOC_Os05g40010.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0477900	LOC_Os05g40010.1				GO:0009414 - response to water deprivation, GO:0006869 - lipid transport, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0008289 - lipid binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
13514	_	OsLTP1.5, OsLtpI.5	_	non-specific lipid transfer protein 1.5, lipid transfer protein 1.5, type 1 non-specific lipid transfer protein 5			6	LOC_Os06g06340.		Os06g0157900	LOC_Os06g06340.1				GO:0006869 - lipid transport, GO:0008289 - lipid binding		
13515	_	OsLTP1.6, OsLtpI.6	_	non-specific lipid transfer protein 1.6, lipid transfer protein 1.6, type 1 non-specific lipid transfer protein 6			6	LOC_Os06g34840.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0539500	LOC_Os06g34840.1				GO:0006869 - lipid transport, GO:0008289 - lipid binding, GO:0009409 - response to cold, GO:0009611 - response to wounding	TO:0000303 - cold tolerance	
13516	_	OsLTP1.7, OsLtpI.7	_	non-specific lipid transfer protein 1.7, lipid transfer protein 1.7, type 1 non-specific lipid transfer protein 7			8	LOC_Os08g03690.	 Biochemical character	Os08g0131200	LOC_Os08g03690.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport		PO:0009009 - plant embryo 
13517	_	OsLTP1.8, OsLtpI.8	_	non-specific lipid transfer protein 1.8, lipid transfer protein 1.8, type 1 non-specific lipid transfer protein 8, Phospholipid transfer protein 9C2			11	D16036. LOC_Os11g02330.	 Biochemical character	Os11g0114900	LOC_Os11g02330.2, LOC_Os11g02330.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport		PO:0009009 - plant embryo 
13518	_	OsLTP1.9, OsLtpI.9	_	non-specific lipid transfer protein 1.9, lipid transfer protein 1.9, type 1 non-specific lipid transfer protein 9			11	Q2QYL3. LOC_Os11g02350.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0115100	LOC_Os11g02350.1				GO:0006952 - defense response, GO:0009611 - response to wounding, GO:0006869 - lipid transport, GO:0008289 - lipid binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0000022 - plant cuticle , PO:0004013 - epidermal cell , PO:0009072 - plant ovary , PO:0009073 - stigma , PO:0009010 - seed 
13519	_	OsLTP1.10, OsLtpI.10	_	non-specific lipid transfer protein 1.10, lipid transfer protein 1.10, type 1 non-specific lipid transfer protein 10			11	LOC_Os11g02379.1.			LOC_Os11g02379						
13520	_	OsLTP1.11, OsLtpI.11	_	non-specific lipid transfer protein 1.11, lipid transfer protein 1.11, type 1 non-specific lipid transfer protein 11			11	LOC_Os11g02379.2.			LOC_Os11g02379						
13521	_	OsLTP1.12, OsLtpI.12	_	non-specific lipid transfer protein 1.12, lipid transfer protein 1.12, type 1 non-specific lipid transfer protein 12			11	D15364. LOC_Os11g02400.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0116000	LOC_Os11g02400.2, LOC_Os11g02400.1				GO:0009611 - response to wounding, GO:0006869 - lipid transport, GO:0008289 - lipid binding		PO:0000025 - root tip , PO:0000022 - plant cuticle 
13522	_	OsLTP1.13, OsLtpI.13	_	non-specific lipid transfer protein 1.13, lipid transfer protein 1.13, type 1 non-specific lipid transfer protein 13			11	LOC_Os11g02424.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0116200	LOC_Os11g02424.2, LOC_Os11g02424.1				GO:0006869 - lipid transport, GO:0009651 - response to salt stress, GO:0008289 - lipid binding, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009066 - anther 
13523	_	OsLTP1.14, OsLtpI.14	_	non-specific lipid transfer protein 1.14, lipid transfer protein 1.14, type 1 non-specific lipid transfer protein 14, Non-specific lipid-transfer protein 1			11	LOC_Os11g24070. Non-specific lipid-transfer protein 1 in Sudo et al. 2008.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0427800	LOC_Os11g24070.1				GO:0006508 - proteolysis, GO:0046688 - response to copper ion, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0008289 - lipid binding, GO:0008233 - peptidase activity, GO:0006869 - lipid transport	TO:0000303 - cold tolerance, TO:0000021 - copper sensitivity, TO:0006001 - salt tolerance	
13524	_	OsLTP1.15, OsLtpI.15	_	non-specific lipid transfer protein 1.15, lipid transfer protein 1.15, type 1 non-specific lipid transfer protein 15			12	O65091. AF051369. D22795. Phospholipid transfer protein. LOC_Os12g02290.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0114500	LOC_Os12g02290.1				GO:0006869 - lipid transport, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0008289 - lipid binding	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009009 - plant embryo 
13525	_	OsLTP1.16, OsLtpI.16	_	non-specific lipid transfer protein 1.16, lipid transfer protein 1.16, type 1 non-specific lipid transfer protein 16			12	Q2QYL3. LOC_Os12g02300.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0114800	LOC_Os12g02300.1				GO:0008289 - lipid binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0006869 - lipid transport, GO:0009611 - response to wounding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009009 - plant embryo , PO:0000022 - plant cuticle , PO:0004013 - epidermal cell , PO:0009072 - plant ovary , PO:0009073 - stigma , PO:0009010 - seed 
13526	_	OsLTP1.17, b1, LTP2, OsLtpI.17	_	non-specific lipid transfer protein 1.17, lipid transfer protein 1.17, type 1 non-specific lipid transfer protein 17, lipid transfer protein b1, nonspecific lipid-transfer protein 2			12	Q2QYL2. X83434. AU174855, AU174854. a class I LTP. nonspecific lipid-transfer protein 2 (LTP 2) in Yamaguchi et al. 2004. LOC_Os12g02310.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0115000/Os12g0115050					GO:0008289 - lipid binding, GO:0009611 - response to wounding, GO:0006869 - lipid transport	TO:0000432 - temperature response trait	PO:0000022 - plant cuticle 
13527	_	OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18	_	non-specific lipid transfer protein 1.18, lipid transfer protein 1.18, type 1 non-specific lipid transfer protein 18, nonspecific lipid transfer protein-1, lipid transfer protein a15			12	Q0IQK9, A2ZHF1. Y08691, AF017360. PDB codes: 1rzl, 1uva, 1uvb, 1uvc. X83435. a class II LTP (Vignols et al. 1997). D15678. Phospholipid transfer protein homolog. LOC_Os12g02320.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0115100	LOC_Os12g02320.1				GO:0006869 - lipid transport, GO:0008289 - lipid binding, GO:0009611 - response to wounding		PO:0000022 - plant cuticle 
13528	_	OsLTP1.19, OsLtpI.19	_	non-specific lipid transfer protein 1.19, lipid transfer protein 1.19, type 1 non-specific lipid transfer protein 19			12	LOC_Os12g02330.1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0115300	LOC_Os12g02330.2				GO:0009409 - response to cold, GO:0006869 - lipid transport, GO:0008289 - lipid binding	TO:0000303 - cold tolerance	
13529	_	OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14	_	non-specific lipid transfer protein 1.20, lipid transfer protein 1.20, type 1 non-specific lipid transfer protein 20			12	LOC_Os12g02340. OsLTPL14 in Wang et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0115500	LOC_Os12g02340.2, LOC_Os12g02340.1				GO:0009611 - response to wounding, GO:0008289 - lipid binding, GO:0009409 - response to cold, GO:0006869 - lipid transport	TO:0000303 - cold tolerance	PO:0000025 - root tip , PO:0000022 - plant cuticle 
13530	_	OsLTP2.1, OsLtpII.1	_	non-specific lipid transfer protein 2.1, lipid transfer protein 2.1, type 2 non-specific lipid transfer protein 1			1	LOC_Os01g49640.		Os01g0691100	LOC_Os01g49640.1						
13531	_	OsLTP2.2, OsLtpII.2	_	non-specific lipid transfer protein 2.2, lipid transfer protein 2.2, type 2 non-specific lipid transfer protein 2			1	LOC_Os01g49650.		Os01g0691300	LOC_Os01g49650.1						
13532	_	OsLTP2.4, OsLtpII.4	_	non-specific lipid transfer protein 2.4, lipid transfer protein 2.4, type 2 non-specific lipid transfer protein 4			5	LOC_Os05g47700.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0550300	LOC_Os05g47700.1				GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
13533	_	OsLTP2.5, OsLtpII.5	_	non-specific lipid transfer protein 2.5, lipid transfer protein 2.5, type 2 non-specific lipid transfer protein 5			5	LOC_Os05g47730.		Os05g0550600	LOC_Os05g47730.1						
13534	_	OsLTP2.6, OsLtpII.6	_	non-specific lipid transfer protein 2.6, lipid transfer protein 2.6, type 2 non-specific lipid transfer protein 6			6	LOC_Os06g49190.		Os06g0705400	LOC_Os06g49190.1						
13535	_	OsLTP2.7, OsLtpII.7	_	non-specific lipid transfer protein 2.7, lipid transfer protein 2.7, type 2 non-specific lipid transfer protein 7			10	LOC_Os10g36070.	 Biochemical character	Os10g0504650	LOC_Os10g36070.1				GO:0006508 - proteolysis, GO:0008233 - peptidase activity		
13536	_	OsLTP2.8, OsLtpII.8	_	non-specific lipid transfer protein 2.8, lipid transfer protein 2.8, type 2 non-specific lipid transfer protein 8			10	LOC_Os10g36090.		Os10g0504700	LOC_Os10g36090.1						
13537	_	OsLTP2.9, OsLtpII.9, LTP2.9, LtpII.9	_	non-specific lipid transfer protein 2.9, lipid transfer protein 2.9, type 2 non-specific lipid transfer protein 9			10			Os10g0504900	LOC_Os10g36100.1				GO:0006869 - lipid transport		
13538	_	OsLTP2.10, OsLtpII.10	_	non-specific lipid transfer protein 2.10, lipid transfer protein 2.10, type 2 non-specific lipid transfer protein 10			10	LOC_Os10g36110.	 Biochemical character	Os10g0505000	LOC_Os10g36110.1				GO:0006508 - proteolysis, GO:0008233 - peptidase activity		
13539	_	OsLTP2.11, OsLtpII.11	_	non-specific lipid transfer protein 2.11, lipid transfer protein 2.11, type 2 non-specific lipid transfer protein 11			10	LOC_Os10g36160.	 Biochemical character	Os10g0505500	LOC_Os10g36160.1				GO:0006508 - proteolysis, GO:0008233 - peptidase activity		
13540	_	OsLTP2.12, OsLtpII.12	_	non-specific lipid transfer protein 2.12, lipid transfer protein 2.12, type 2 non-specific lipid transfer protein 12			10	LOC_Os10g36170.	 Biochemical character	Os10g0505700	LOC_Os10g36170.1				GO:0008233 - peptidase activity, GO:0006508 - proteolysis		
13541	_	OsLTP2.13, OsLtpII.13	_	non-specific lipid transfer protein 2.13, lipid transfer protein 2.13, type 2 non-specific lipid transfer protein 13			11	LOC_Os11g40530.		Os11g0620300	LOC_Os11g40530.1						
13542	_	OsLTPd1, OsLtpIV.1	_	non-specific lipid transfer protein d1, lipid transfer protein d1, type D non-specific lipid transfer protein 1			1	LOC_Os01g68580.		Os01g0914100	LOC_Os01g68580.1						
13543	_	OsLTPd2, OsLtpIV.2	_	non-specific lipid transfer protein d2, lipid transfer protein d2, type D non-specific lipid transfer protein 2			1	LOC_Os01g68589.		Os01g0914300	LOC_Os01g68589.1						
13544	_	OsLTPd3, OsLtpIV.3	_	non-specific lipid transfer protein d3, lipid transfer protein d3, type D non-specific lipid transfer protein 3			7	LOC_Os07g18750.		Os07g0287400	LOC_Os07g18750.1						
13545	_	OsLTPd4, OsLtpIV.4	_	non-specific lipid transfer protein d4, lipid transfer protein d4, type D non-specific lipid transfer protein 4			7	LOC_Os07g18990.		Os07g0290200	LOC_Os07g18990.1						
13546	_	OsLTPd5, LTPd5	_	non-specific lipid transfer protein d5, lipid transfer protein d5, type D non-specific lipid transfer protein 5			1	LOC_Os01g62980.	 Biochemical character	Os01g0849000	LOC_Os01g62980.2, LOC_Os01g62980.1						PO:0009006 - shoot system , PO:0000034 - vascular system , PO:0009066 - anther , PO:0009013 - portion of meristem tissue 
13547	_	OsLTPd6, OsLtpV.2	_	non-specific lipid transfer protein d6, lipid transfer protein d6, type D non-specific lipid transfer protein 6			4	LOC_Os04g33920.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0415800	LOC_Os04g33920.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009009 - plant embryo , PO:0009006 - shoot system 
13548	_	OsLTPd7, OsLtpV.3	_	non-specific lipid transfer protein d7, lipid transfer protein d7, type D non-specific lipid transfer protein 7			4	LOC_Os04g33930.		Os04g0415900	LOC_Os04g33930.2, LOC_Os04g33930.1						
13549	_	OsLTPd8, OsLtpV.4, PI	_	non-specific lipid transfer protein d8, lipid transfer protein d8, type D non-specific lipid transfer protein 8, Protease inhibitor			5	LOC_Os05g06780.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0160300	LOC_Os05g06780.1				GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0000034 - vascular system , PO:0009013 - portion of meristem tissue , PO:0009066 - anther 
13550	_	OsLTPd9, OsLtpVI.1	_	non-specific lipid transfer protein d9, lipid transfer protein d9, type D non-specific lipid transfer protein 9			1	LOC_Os01g58650.		Os01g0800600	LOC_Os01g58650.1						
13551	_	OsLTPd10, OsLtpVI.2	_	non-specific lipid transfer protein d10, lipid transfer protein d10, type D non-specific lipid transfer protein 10			1	LOC_Os01g58660.1.			LOC_Os01g58660						
13552	_	OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL	_	non-specific lipid transfer protein d11, lipid transfer protein d11, type D non-specific lipid transfer protein 11, Drought-Induced LTP, Drought-Induced lipid transfer protein			10	an anther-specific lipid transfer protein. CT833313. LOC_Os10g05720.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0148000	LOC_Os10g05720.2, LOC_Os10g05720.1				GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009609 - response to symbiotic bacterium, GO:0008233 - peptidase activity, GO:0009628 - response to abiotic stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006508 - proteolysis	TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
13553	_	OsLTPd12, OsLtpVI.4	_	non-specific lipid transfer protein d12, lipid transfer protein d12, type D non-specific lipid transfer protein 12			11	LOC_Os11g29420.	 Biochemical character	Os11g0484700	LOC_Os11g29420.1				GO:0006508 - proteolysis, GO:0008233 - peptidase activity		
13554	_	OsLTPx1, OsLtpY.1	_	type X non-specific lipid transfer protein 1, non-specific lipid transfer protein x1, lipid transfer protein x1			3	LOC_Os03g44000.		Os03g0641500	LOC_Os03g44000.1						
13555	_	OsLTPx2, OsLtpY.2	_	type X non-specific lipid transfer protein 2, non-specific lipid transfer protein x2, lipid transfer protein x2			7	LOC_Os07g27940.1.			LOC_Os07g27940						
13556	_	OsLTPx3, OsLtpY.3	_	type X non-specific lipid transfer protein 3, non-specific lipid transfer protein x3, lipid transfer protein x3			11	LOC_Os11g34660.	 Biochemical character		LOC_Os11g34660				GO:0008233 - peptidase activity, GO:0006508 - proteolysis		
13557	LTP1	Ltp1, RLTP1	LIPID TRANSFER PROTEIN 1	non-specific lipid-transfer protein 1, type-1 lipid transfer protein, lipid transfer protein	LIPID TRANSFER PROTEIN 1		11	Z23271. A2ZAT0. AF017359 (chr11). AF017361 (Os11g0115400). LOC_Os11g02389.	 Biochemical character	Os11g0115400/Os12g0115000					GO:0006869 - lipid transport, GO:0008289 - lipid binding		PO:0009013 - portion of meristem tissue , PO:0009073 - stigma , PO:0000146 - abscission zone , PO:0000022 - plant cuticle 
13558	_	OsMS2, MS2, OsDPW, DPW, DPW1	_	MALE STERILITY 2, male sterility protein 2, defective pollen wall		dpw	3	a homologous gene of Arabidopsis MS2. C99490.fatty acid reductase. Fatty Acyl Carrier Protein Reductase. dpw rice mutants exhibit anther cuticle defects. 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0167600	LOC_Os03g07140.1				GO:0010208 - pollen wall assembly, GO:0010584 - pollen exine formation, GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity, GO:0048653 - anther development, GO:0080110 - sporopollenin biosynthetic process	TO:0000432 - temperature response trait, TO:0000214 - anther shape, TO:0000437 - male sterility	PO:0001004 - anther development stage 
13559	CER1	OsCER1, OsGL1-4, Os CER1	ECERIFERUM 1	ECERIFERUM 1, Glossy1-homologous gene 4			2	Arabidopsis CER1 homolog. GO:0071771:aldehyde decarbonylase activity. a WDA1 paralog. PO:0030123: panicle inflorescence.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0621300	LOC_Os02g40784.3, LOC_Os02g40784.1				GO:0048653 - anther development, GO:0009657 - plastid organization, GO:0046185 - aldehyde catabolic process, GO:0010025 - wax biosynthetic process, GO:0005506 - iron ion binding, GO:0009555 - pollen development, GO:0043447 - alkane biosynthetic process, GO:0010229 - inflorescence development, GO:0042335 - cuticle development, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0006633 - fatty acid biosynthetic process	TO:0000276 - drought tolerance, TO:0000437 - male sterility, TO:0000709 - leaf gloss, TO:0000621 - inflorescence development trait	PO:0009066 - anther , PO:0009051 - spikelet , PO:0020048 - microspore , PO:0009071 - anther wall tapetum , PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0001083 - inflorescence development stage 
13560	_	OsACS	_	Acyl-CoA synthetase			3		 Biochemical character	Os03g0133500	LOC_Os03g04120.1				GO:0016874 - ligase activity		
13561	_	OsCHS, FAE, OsFAE1	_	Chalcone Synthase, FATTY ACID ELONGATION1, fatty acid elongase 1			5	one of the beta-ketoacyl CoA synthase genes.	 Biochemical character	Os05g0574600	LOC_Os05g49900.1				GO:0006633 - fatty acid biosynthetic process, GO:0016020 - membrane, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
13562	_		_	CRL4-like			2			Os02g0326600	LOC_Os02g22090.1				GO:0010540 - basipetal auxin transport, GO:0048765 - root hair cell differentiation, GO:0009826 - unidimensional cell growth, GO:0016192 - vesicle-mediated transport, GO:0009942 - longitudinal axis specification, GO:0001736 - establishment of planar polarity, GO:0005802 - trans-Golgi network, GO:0005086 - ARF guanyl-nucleotide exchange factor activity, GO:0032012 - regulation of ARF protein signal transduction, GO:0010292 - GTP:GDP antiporter activity, GO:0010087 - phloem or xylem histogenesis, GO:0080119 - ER body organization, GO:0007155 - cell adhesion, GO:0000911 - cytokinesis by cell plate formation		
13563	GRX8	OsGRX8, OsROXY1, OsROXY2	GLUTAREDOXIN 8	glutaredoxin 8	GLUTAREDOXIN 8		2	an ortholog of Arabidopsis ROXY1. Q6K609. OsROXY2 in Wang et al. 2009.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0512400	LOC_Os02g30850.1				GO:0048451 - petal formation, GO:0048653 - anther development, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0048448 - stamen morphogenesis, GO:0005634 - nucleus, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0022900 - electron transport chain		
13564	GRX2	OsGRX2	GLUTAREDOXIN 2	glutaredoxin 2	GLUTAREDOXIN 2		1	Q5SMY5.	 Biochemical character	Os01g0194600	LOC_Os01g09830.1				GO:0009055 - electron carrier activity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity		
13565	GRX3	OsGRX3	GLUTAREDOXIN 3	glutaredoxin 3	GLUTAREDOXIN 3		1	Q0JP62.	 Biochemical character	Os01g0241400	LOC_Os01g13950.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0005737 - cytoplasm, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0045454 - cell redox homeostasis, GO:0046872 - metal ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding		
13566	GRX4	OsGRX4, OsGrx_C7, Grx_C7	GLUTAREDOXIN 4	glutaredoxin 4	GLUTAREDOXIN 4		1	Q7G8Y5. OsGrx_C7 in Verma et al. 2016 and Chen et al. 2017. LOC_Os01g27140. TO:0006054: arsenic concentration.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0368900	LOC_Os01g27140.1				GO:0046685 - response to arsenic, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding	TO:0000465 - mineral and ion content related trait	
13567	GRX6	OsGRX6, OsGrx_I1, Grx_I1	GLUTAREDOXIN 6	glutaredoxin 6	GLUTAREDOXIN 6		1	Q5QLR2. AU162644, AU056017. TO:0020093: nitrogen content. TO:0000905: seed yield. OsGrx_I1 in Yang et al. 2016. LOC_Os01g47760. a plant-specific CC-type glutaredoxin.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0667900	LOC_Os01g47760.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0048878 - chemical homeostasis, GO:0045487 - gibberellin catabolic process, GO:0009691 - cytokinin biosynthetic process, GO:0009826 - unidimensional cell growth, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009736 - cytokinin mediated signaling, GO:0009686 - gibberellin biosynthetic process, GO:0010476 - gibberellin-mediated signaling, GO:0015035 - protein disulfide oxidoreductase activity, GO:0015996 - chlorophyll catabolic process, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0002675 - gibberellic acid content, TO:0000402 - grain width, TO:0002660 - cytokinin content, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000495 - chlorophyll content, TO:0000445 - seed number, TO:0000396 - grain yield, TO:0000432 - temperature response trait	
13568	GRX7	OsGRX7	GLUTAREDOXIN 7	glutaredoxin 7	GLUTAREDOXIN 7		1	Q0JG89.	 Biochemical character	Os01g0936000	LOC_Os01g70990.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity		
13569	GRX13	OsGRX13, OsROXY1	GLUTAREDOXIN 13	glutaredoxin 13	GLUTAREDOXIN 13		4	Q0JDM4.	 Biochemical character	Os04g0393500	LOC_Os04g32300.1				GO:0048653 - anther development, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0048448 - stamen morphogenesis, GO:0048451 - petal formation, GO:0005634 - nucleus		
13570	GRX15	OsGRX15	GLUTAREDOXIN 15	glutaredoxin 15	GLUTAREDOXIN 15		5	P0C290.	 Biochemical character	Os05g0149950	LOC_Os05g05730.1				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis		
13571	GRX16	OsGRX16	GLUTAREDOXIN 16	glutaredoxin 16	GLUTAREDOXIN 16		5	Q0DK35.	 Biochemical character	Os05g0198200	LOC_Os05g10930.1				GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm		
13572	GRX17	OsGRX17	GLUTAREDOXIN 17	glutaredoxin 17	GLUTAREDOXIN 17		5	P0C291.	 Biochemical character	Os05g0563900	LOC_Os05g48930.1				GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding		
13573	GRX19	OsGRX19	GLUTAREDOXIN 19	glutaredoxin 19	GLUTAREDOXIN 19		7	Q7XIZ1.	 Biochemical character	Os07g0151100	LOC_Os07g05630.1				GO:0022900 - electron transport chain, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13574	GRX23	OsGRX23	GLUTAREDOXIN 23	glutaredoxin 23	GLUTAREDOXIN 23		11	Q2R076.	 Biochemical character	Os11g0655900	LOC_Os11g43520.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity		
13575	GRX24	OsGRX24	GLUTAREDOXIN 24	glutaredoxin 24	GLUTAREDOXIN 24		11	Q2R075.	 Biochemical character	Os11g0656000	LOC_Os11g43530.1				GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity		
13576	GRX25	OsGRX25	GLUTAREDOXIN 25	glutaredoxin 25	GLUTAREDOXIN 25		11	Q2R073.	 Biochemical character	Os11g0656400	LOC_Os11g43550.1				GO:0005737 - cytoplasm, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005634 - nucleus		
13577	GRX26	OsGRX26	GLUTAREDOXIN 26	glutaredoxin 26	GLUTAREDOXIN 26		11	Q0IRB0.	 Biochemical character	Os11g0656700	LOC_Os11g43580.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0022900 - electron transport chain, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
13578	GRX28	OsGRX28	GLUTAREDOXIN 28	glutaredoxin 28, glutaredoxin-C14	GLUTAREDOXIN 28		12	Q0IMV4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0538600	LOC_Os12g35330.1				GO:0046688 - response to copper ion, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0000021 - copper sensitivity	
13579	GRX29	OsGRX29	GLUTAREDOXIN 29	glutaredoxin 29	GLUTAREDOXIN 29		12	Q2QP86.	 Biochemical character	Os12g0538700	LOC_Os12g35340.1				GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0015035 - protein disulfide oxidoreductase activity		
13580	GRX1	OsGRX1	GLUTAREDOXIN 1	glutaredoxin 1	GLUTAREDOXIN 1		1	Q0JQ97.	 Biochemical character	Os01g0174900	LOC_Os01g07950.1				GO:0046872 - metal ion binding, GO:0005739 - mitochondrion, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0051537 - 2 iron, 2 sulfur cluster binding		
13581	GRX5	OsGRX5	GLUTAREDOXIN 5	glutaredoxin 5	GLUTAREDOXIN 5		1	Q0JM76.	 Biochemical character	Os01g0530400	LOC_Os01g34620.9, LOC_Os01g34620.8, LOC_Os01g34620.7, LOC_Os01g34620.6, LOC_Os01g34620.5, LOC_Os01g34620.4, LOC_Os01g34620.3, LOC_Os01g34620.2, LOC_Os01g34620.1				GO:0005739 - mitochondrion, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0046872 - metal ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009055 - electron carrier activity		
13582	GRX11	OsGRX11	GLUTAREDOXIN 11	glutaredoxin 11	GLUTAREDOXIN 11		3	Q851Y7.	 Biochemical character	Os03g0851200	LOC_Os03g63420.1				GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0046872 - metal ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0006812 - cation transport, GO:0009507 - chloroplast, GO:0015297 - antiporter activity, GO:0015038 - glutathione disulfide oxidoreductase activity		
13583	GRX22	OsGRX22, OsGRXS17, GRXS17	GLUTAREDOXIN 22	glutaredoxin 22, Glutaredoxin S17	GLUTAREDOXIN 22		10	LOC_Os10g35720. Q0IWL9. a Functional Homolog of AtGRXS17.  GO:0080148: negative regulation of response to water deprivation. GO:2000377: regulation of reactive oxygen species metabolic process. GO:0090333: regulation of stomatal closure.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0500700	LOC_Os10g35720.2, LOC_Os10g35720.1				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009651 - response to salt stress, GO:0005635 - nuclear envelope, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0046872 - metal ion binding, GO:0006970 - response to osmotic stress	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000522 - stomatal conductance, TO:0000136 - relative water content, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content	
13584	GRX27	OsGRX27	GLUTAREDOXIN 27	glutaredoxin 27	GLUTAREDOXIN 27		12	Q2QX01.	 Biochemical character	Os12g0175500	LOC_Os12g07650.1				GO:0046872 - metal ion binding, GO:0009570 - chloroplast stroma, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0006812 - cation transport, GO:0009055 - electron carrier activity, GO:0051537 - 2 iron, 2 sulfur cluster binding		
13585	GRX9	OsGRX9, OsGrx_C2.1, Grx_C2.1	GLUTAREDOXIN 9	glutaredoxin 9	GLUTAREDOXIN 9		2	Q6K953. OsGrx_C2.1 in Verma et al. 2016 and Chen et al. 2017. TO:0006054: arsenic concentration. LOC_Os02g40500.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0618100	LOC_Os02g40500.1				GO:0046685 - response to arsenic, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0022900 - electron transport chain, GO:0009507 - chloroplast, GO:0045454 - cell redox homeostasis	TO:0000465 - mineral and ion content related trait	
13586	GRX10	OsGRX10	GLUTAREDOXIN 10	glutaredoxin 10	GLUTAREDOXIN 10		2	LOC_Os02g43180. Q6H628.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0646400	LOC_Os02g43180.3, LOC_Os02g43180.2, LOC_Os02g43180.1				GO:0009409 - response to cold, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0051537 - 2 iron, 2 sulfur cluster binding	TO:0000303 - cold tolerance	
13587	GRX12	OsGRX12	GLUTAREDOXIN 12	glutaredoxin 12	GLUTAREDOXIN 12		4		 Biochemical character	Os04g0244400	LOC_Os04g17050.1				GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0005739 - mitochondrion		
13588	GRX18	OsGRX18	GLUTAREDOXIN 18	glutaredoxin 18	GLUTAREDOXIN 18		6	Q0DAE4.	 Biochemical character	Os06g0659500	LOC_Os06g44910.2, LOC_Os06g44910.1				GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity		
13589	GRX20	OsGRX20	GLUTAREDOXIN 20	glutaredoxin 20	GLUTAREDOXIN 20		8	GO:1901562: response to paraquat.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0558200	LOC_Os08g44400.3, LOC_Os08g44400.2, LOC_Os08g44400.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0006749 - glutathione metabolic process, GO:0042742 - defense response to bacterium, GO:0009635 - response to herbicide, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0004364 - glutathione transferase activity, GO:0009408 - response to heat, GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009535 - chloroplast thylakoid membrane	TO:0000163 - auxin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000058 - herbicide sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
13590	GRX21	OsGRX21	GLUTAREDOXIN 21	glutaredoxin 21	GLUTAREDOXIN 21		8	Q0J3L4.	 Biochemical character	Os08g0565800	LOC_Os08g45140.1				GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0009507 - chloroplast, GO:0015035 - protein disulfide oxidoreductase activity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009055 - electron carrier activity		
13591	_	OsGRL1	_	GRX-like protein 1, glutaredoxin-like protein 1			1		 Biochemical character	Os01g0235900	LOC_Os01g13480.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
13592	_	OsGRL2	_	GRX-like protein 2, glutaredoxin-like protein 2			1		 Biochemical character	Os01g0829400	LOC_Os01g61350.1				GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
13593	_	OsGRL3	_	GRX-like protein 3, glutaredoxin-like protein 3			2		 Biochemical character	Os02g0102000	LOC_Os02g01200.1				GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity		
13594	_	OsGRL4	_	GRX-like protein 4, glutaredoxin-like protein 4			2		 Biochemical character	Os02g0748800	LOC_Os02g51370.1				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13595	_	OsGRL5	_	GRX-like protein 5, glutaredoxin-like protein 5			3		 Biochemical character	Os03g0170800	LOC_Os03g07470.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity		
13596	_	OsGRL6	_	GRX-like protein 6, glutaredoxin-like protein 6			3		 Biochemical character	Os03g0356400	LOC_Os03g24030.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
13597	_	OsGRL7	_	GRX-like protein 7, glutaredoxin-like protein 7			3		 Biochemical character	Os03g0648800	LOC_Os03g44650.1				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13598	_	OsGRL8	_	GRX-like protein 8, glutaredoxin-like protein 8			4		 Biochemical character	Os04g0412800	LOC_Os04g33680.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
13599	_	OsGRL9	_	GRX-like protein 9, glutaredoxin-like protein 9			4		 Biochemical character	Os04g0641300/Os04g0641450					GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13600	_	OsGRL10, GRL10, OsSTA146, STA146	_	GRX-like protein 10, glutaredoxin-like protein 10			5	a mature anther-preferentially expressed gene. LOC_Os05g28530	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0353600	LOC_Os05g28530.1				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		PO:0009066 - anther 
13601	_	OsGRL11	_	GRX-like protein 11, glutaredoxin-like protein 11			5		 Biochemical character	Os05g0471350	LOC_Os05g39450.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity		
13602	_	OsGRL12	_	GRX-like protein 12, glutaredoxin-like protein 12			6	GO:0035556:intracellular signal transduction.	 Biochemical character	Os06g0224200	LOC_Os06g12030.3, LOC_Os06g12030.2, LOC_Os06g12030.1				GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
13603	_	OsGRL13	_	GRX-like protein 13, glutaredoxin-like protein 13			6		 Biochemical character	Os06g0226100	LOC_Os06g12190.1				GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
13604	_	OsGRL14	_	GRX-like protein 14, glutaredoxin-like protein 14			7		 Biochemical character	Os07g0159900	LOC_Os07g06600.1				GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
13606	_	OsGRL16	_	GRX-like protein 16, glutaredoxin-like protein 16			7		 Biochemical character	Os07g0659900	LOC_Os07g46570.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity		
13607	_	OsGRL17	_	GRX-like protein 17, glutaredoxin-like protein 17			8		 Biochemical character	Os08g0171333	LOC_Os08g07450.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
13608	_	OsGRL18	_	GRX-like protein 18, glutaredoxin-like protein 18			8		 Biochemical character	Os08g0554699	LOC_Os08g44070.1				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13609	_	OsGRL19	_	GRX-like protein 19, glutaredoxin-like protein 19			10	GO:0035556:intracellular signal transduction.	 Biochemical character	Os10g0482900	LOC_Os10g34170.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity		
13610	_	OsVHA-B, VHA-B	_	Vacuolar H-ATPase B subunit, vacuolar-ATPase subunit B, vacuolar H+-ATPase B subunit, V-ATPase B, Vacuolar ATPase B subunit	_		6	AB055106. LOC_Os06g37180.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0568200	LOC_Os06g37180.1				GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0005773 - vacuole, GO:0046034 - ATP metabolic process, GO:0033180 - proton-transporting V-type ATPase, V1 domain, GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0010255 - glucose mediated signaling, GO:0009941 - chloroplast envelope		
13611	_	COR413-TM1, Oscor413-tm1	_	Cold acclimation protein 413-TM1, COR413-thylakoid membrane group multispanning transmembrane protein 1, cold-regulated 413-thylakoid membrane group multispanning transmembrane protein 1			5	AY181210.	 Tolerance and resistance - Stress tolerance	Os05g0566800	LOC_Os05g49170.1				GO:0009535 - chloroplast thylakoid membrane, GO:0031357 - integral to chloroplast inner membrane, GO:0009737 - response to abscisic acid stimulus, GO:0070417 - cellular response to cold, GO:0042631 - cellular response to water deprivation, GO:0009631 - cold acclimation		
13612	_	OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9	_	protein phosphatase 15, protein phosphatase 2C09, protein phosphatase 2C9, protein phosphatase 2C 9			1	LOC_Os01g62760. Q5N9N2. OsPP2C09 in Xue et al. 2008, KIm et al. 2012 and Chen et al. 2014. OsPP15 in Liu et al. 2013, Guo et al. 2018. a PP2C homolog of ABI1, a key member in the abscisic acid (ABA) signaling pathway. GO:0080148: negative regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance	Os01g0846300	LOC_Os01g62760.1				GO:0009738 - abscisic acid mediated signaling, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0010119 - regulation of stomatal movement, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000276 - drought tolerance	
13614	EBS	OsEBS	ENHANCING BIOMASS AND SPIKELET NUMBER	enhancing biomass and spikelet number			5	LOC_Os05g51360. JX162210(Oryza rufipogon), JX162211(Oryza sativa indica).  OsEBS is a good candidate for the QTL qGP5-1. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Inflorescence,  Character as QTL - Yield and productivity	Os05g0591400	LOC_Os05g51360.1				GO:0005524 - ATP binding, GO:0008283 - cell proliferation	TO:0000207 - plant height, TO:0002637 - leaf size, TO:0000456 - spikelet number, TO:0000457 - total biomass yield, TO:0000449 - grain yield per plant, TO:0000373 - inflorescence anatomy and morphology trait	PO:0025034 - leaf 
13615	_	OsRacGEF1, RacGEF1	_	Rac GDP/GTP exchange factor 1					 Tolerance and resistance - Disease resistance	Os09g0544800	LOC_Os09g37270.2, LOC_Os09g37270.1				GO:0009860 - pollen tube growth, GO:0016324 - apical plasma membrane, GO:0080092 - regulation of pollen tube growth, GO:0005089 - Rho guanyl-nucleotide exchange factor activity		
13616	_	CRC1	_	CENTRAL REGION COMPONENT1		crc1	4	KF245924. Q7XK25. CRC1 is orthologous to Saccharomyces cerevisiae pachytene checkpoint2 (Pch2) and Mus musculus THYROID RECEPTOR-INTERACTING PROTEIN13 (TRIP13) and may be a conserved SC component.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0479000	LOC_Os04g40290.1				GO:0007126 - meiosis, GO:0017111 - nucleoside-triphosphatase activity, GO:0005524 - ATP binding, GO:0000706 - meiotic DNA double-strand break processing		
13617	_	OsVQ1	_	VQ motif-containing protein 1			1		 Tolerance and resistance - Stress tolerance	Os01g0278000	LOC_Os01g17050.1						
13618	_	OsVQ2	_	VQ motif-containing protein 2			1		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0653300	LOC_Os01g46440.1						
13619	_	OsVQ3	_	VQ motif-containing protein 3			1		 Tolerance and resistance - Disease resistance	Os01g0747800	LOC_Os01g54400.1						
13620	_	OsVQ4	_	VQ motif-containing protein 4			1		 Tolerance and resistance - Stress tolerance	Os01g0808900	LOC_Os01g59410.1						
13621	_	OsVQ5	_	VQ motif-containing protein 5			2		 Tolerance and resistance - Stress tolerance	Os02g0173200	LOC_Os02g07690.1						
13622	_	OsVQ6	_	VQ motif-containing protein 6			2		 Tolerance and resistance - Stress tolerance	Os02g0251800	LOC_Os02g15280.1						
13623	_	OsVQ7	_	VQ motif-containing protein 7			2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0251900	LOC_Os02g15290.1						
13624	_	OsVQ8	_	VQ motif-containing protein 8			2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0539500	LOC_Os02g33600.1						
13625	_	OsVQ9	_	VQ motif-containing protein 9			2		 Tolerance and resistance - Disease resistance	Os02g0753700	LOC_Os02g51740.1						
13626	_	OsVQ10, VQ10	_	VQ motif-containing protein 10, DEAD-box ATP-dependent RNA helicase 12-like			3		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0319000	LOC_Os03g20330.1				GO:0016021 - integral to membrane, GO:0009751 - response to salicylic acid stimulus		
13627	_	OsVQ11	_	VQ motif-containing protein 11			3		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0320600	LOC_Os03g20440.1						
13628	_	OsVQ12	_	VQ motif-containing protein 12			3		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0387300	LOC_Os03g26990.1						
13629	_	OsVQ13	_	VQ motif-containing protein 13			3		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0676400	LOC_Os03g47280.1						
13630	_	OsVQ14	_	VQ motif-containing protein 14			3	LOC_Os03g57520.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os03g57520						
13631	_	OsVQ15	_	VQ motif-containing protein 15			4		 Tolerance and resistance - Disease resistance	Os04g0417600	LOC_Os04g34050.1						
13632	_	OsVQ16	_	VQ motif-containing protein 16			4		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0645200	LOC_Os04g55240.1						
13633	_	OsVQ17	_	VQ motif-containing protein 17			4		 Tolerance and resistance - Stress tolerance	Os04g0665900	LOC_Os04g57030.1						
13634	_	OsVQ18	_	VQ motif-containing protein 18			5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0211700	LOC_Os05g12090.1						
13635	_	OsVQ19	_	VQ motif-containing protein 19			5		 Tolerance and resistance - Disease resistance	Os05g0390800	LOC_Os05g32460.1						
13636	_	OsVQ20	_	VQ motif-containing protein 20			5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0491700	LOC_Os05g41250.1						
13637	_	OsVQ21	_	VQ motif-containing protein 21			5			Os05g0519000	LOC_Os05g44270.1						
13638	_	OsVQ22	_	VQ motif-containing protein 22			6			Os06g0530600	LOC_Os06g33970.1						
13639	_	OsVQ23	_	VQ motif-containing protein 23			6			Os06g0603300	LOC_Os06g40090.1						
13640	_	OsVQ24	_	VQ motif-containing protein 24			6		 Tolerance and resistance - Stress tolerance	Os06g0618700	LOC_Os06g41450.1						
13641	_	OsVQ25	_	VQ motif-containing protein 25			6		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0666400	LOC_Os06g45570.1						
13642	_	OsVQ26	_	VQ motif-containing protein 26			7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0161700	LOC_Os07g06750.1						
13643	_	OsVQ27	_	VQ motif-containing protein 27			7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0161900	LOC_Os07g06760.1						
13644	_	OsVQ28	_	VQ motif-containing protein 28			7		 Tolerance and resistance - Disease resistance	Os07g0162000	LOC_Os07g06790.1						
13645	_	OsVQ29	_	VQ motif-containing protein 29			7		 Tolerance and resistance - Disease resistance	Os07g0624200	LOC_Os07g43140.1						
13646	_	OsVQ30	_	VQ motif-containing protein 30			7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0686600	LOC_Os07g48710.1						
13647	_	OsVQ31	_	VQ motif-containing protein 31			7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0687400	LOC_Os07g48800.1						
13648	_	OsVQ32	_	VQ motif-containing protein 32			8		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0102900	LOC_Os08g01260.1						
13649	_	OsVQ33	_	VQ motif-containing protein 33			8		 Tolerance and resistance - Disease resistance	Os08g0409500	LOC_Os08g31660.1						
13650	_	OsVQ34	_	VQ motif-containing protein 34			9		 Tolerance and resistance - Stress tolerance	Os09g0365000	LOC_Os09g20020.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
13651	_	OsVQ35	_	VQ motif-containing protein 35			9		 Tolerance and resistance - Stress tolerance	Os09g0370500	LOC_Os09g20460.1						
13652	_	OsVQ36	_	VQ motif-containing protein 36			10		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0101800	LOC_Os10g01240.1						
13653	_	OsVQ37	_	VQ motif-containing protein 37			11		 Tolerance and resistance - Stress tolerance	Os11g0131100	LOC_Os11g03660.1						
13654	_	OsVQ38	_	VQ motif-containing protein 38			11		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0235900	LOC_Os11g12790.1						
13655	_	OsVQ39	_	VQ motif-containing protein 39			12		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0127800	LOC_Os12g03420.1						
13656	_	CIP73, OsCIP73_like	_	CCaMK-interacting protein of approximately 73 kD			8			Os08g0295000/Os08g0295100							
13657	_	LRK6	_	leucine-rich receptor-like kinase 6			2	AY730046 (OsInlk6; LRR). DQ195081 (ABA41563.1). AY756174 (AAV33328.1, Oryza rufipogon). LRK6 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.		Os02g0153400	LOC_Os02g05930.1				GO:0005524 - ATP binding, GO:0001653 - peptide receptor activity, GO:0004888 - transmembrane receptor activity, GO:0009611 - response to wounding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
13658	_	Os-AT1	_	AT hook-containing protein 1, AT hook-containing DNA-binding protein 1			5	X88798.	 Other	Os05g0597200	LOC_Os05g51850.3, LOC_Os05g51850.2, LOC_Os05g51850.1				GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly		
13659	_	Os-AT2	_	AT hook-containing protein 2, AT hook-containing DNA-binding protein 2				X88799.	 Other						GO:0003677 - DNA binding		
13660	_	Os-PF1, PF1	_	positive factor 1			9	an A-T hook-containing DNA binding protein. an HMG-I/Y protein. L24390.	 Other	Os09g0402100	LOC_Os09g23730.1				GO:0008283 - cell proliferation, GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0001708 - cell fate specification		
13661	_	OsGT-2, GT-2, OsMSL22, MSL22	_	Myb/SANT-LIKE 22, GT-motif protein 2			4	X68261. a DNA binding protein. a transcriptional activator.	 Other	Os04g0541100	LOC_Os04g45750.2, LOC_Os04g45750.1				GO:0005634 - nucleus, GO:0003682 - chromatin binding		PO:0009005 - root 
13663	_	REF1A	_	ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha, translation elongation factor 1A	_			AF067195. Northern hybridization using REF1A fragment as a probe showed that salt, drought, cold and heat-shock stresses induced the transcription of eEF1A genes. (Because of the REF1A fragment shows significant sequence homology to sequences of other rice eEF1A gene members,  it is possible that transcription of different eEF1A members were detected.)	 Tolerance and resistance - Stress tolerance						GO:0003746 - translation elongation factor activity		
13664	_	Os GPT	_	glucose-6-phosphate/phosphate-translocator			5	AB060277. a cerebroside elicitor-responsive gene.	 Tolerance and resistance - Disease resistance	Os05g0168700	LOC_Os05g07670.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
13665	_	Os SBP, OsSBP	_	selenium-binding protein, selenium-binding protein homologue			1	AB059401. AU174343, AU174344. a cerebroside elicitor-responsive gene. a rice homolog of mammalian selenium-binding protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0916400	LOC_Os01g68770.1				GO:0000103 - sulfate assimilation, GO:0042542 - response to hydrogen peroxide, GO:0046686 - response to cadmium ion, GO:0010197 - polar nucleus fusion, GO:0071291 - cellular response to selenium ion, GO:0008430 - selenium binding	TO:0000432 - temperature response trait	
13666	_		_	kinase-like protein			2	AB060276. a cerebroside elicitor-responsive gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0601800	LOC_Os02g38980.6, LOC_Os02g38980.5, LOC_Os02g38980.4, LOC_Os02g38980.3, LOC_Os02g38980.1				GO:0016301 - kinase activity		
13667	_	OsS5a, S5a, OsRpn10, Rpn10	_	Subunit 5 a, 26S proteasome subunit 5a, 19S regulatory particle non-ATPase subunit 10, RP non-ATPase 10, Regulatory Particle Non-ATPase 10, 26S prote- asome non-ATPase regulatory subunit 4			3	Os03g0243300. AB010740. a homolog of Arabidopsis MBP1. a 19S regulatory particle subunit from the rice 26S proteasome. AU032656. AB037151.	 Biochemical character	Os03g0243300	LOC_Os03g13970.2, LOC_Os03g13970.1	GR:0061400			GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0010029 - regulation of seed germination, GO:0043248 - proteasome assembly, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0048528 - post-embryonic root development, GO:0009555 - pollen development, GO:0010150 - leaf senescence, GO:0001653 - peptide receptor activity, GO:0051788 - response to misfolded protein, GO:0048767 - root hair elongation, GO:0048455 - stamen formation, GO:0016020 - membrane, GO:0009744 - response to sucrose stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0006974 - response to DNA damage stimulus		
13668	ALDH3E1	OS-ALDH, OsALDH3E1	ALDEHYDE DEHYDROGENASE 3E1	aldehyde dehydrogenase, Aldehyde Dehydrogenase-Like Protein, aldehyde dehydrogenase 3E1	ALDEHYDE DEHYDROGENASE 3E1		2	LOC_Os02g43194. AF148877. 	 Biochemical character	Os02g0646500	LOC_Os02g43194.1				GO:0009507 - chloroplast, GO:0006081 - cellular aldehyde metabolic process, GO:0016020 - membrane, GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity, GO:0005783 - endoplasmic reticulum	TO:0000723 - microsporocyte development trait	
13669	_	IAI1	_	incompatible strain of P. avenae-induced gene 1			1	AB059237.	 Tolerance and resistance - Disease resistance	Os01g0329800	LOC_Os01g22630.2, LOC_Os01g22630.1						
13670	_	IAI2	_	incompatible strain of P. avenae-induced gene 2			1	AB059238.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0132000	LOC_Os01g04050.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region, GO:0008233 - peptidase activity, GO:0006508 - proteolysis		
13671	_	CAI1	_	compatible strain of P. avenae-induced gene 1			10	AB059239.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0452300	LOC_Os10g31460.1						
13672	_	thyA	_	Thymidylate Synthase				AB023402.	 Biochemical character						GO:0004799 - thymidylate synthase activity, GO:0006231 - dTMP biosynthetic process		
13673	_	OsHT, OsLHT1, LHT1	_	Histidine Transporter, lysine and histidine transporter 1, lysine-histidine-like transporter 1			8	AJ557777. GO:0080167:response to karrikin. LOC_Os08g03350.	 Biochemical character	Os08g0127100	LOC_Os08g03350.1				GO:0009536 - plastid, GO:0005886 - plasma membrane, GO:0043090 - amino acid import, GO:0016021 - integral to membrane		
13674	_	OsF5HL, F5HL, CYP84A7	_	Ferulate-5-hydroxylase			6	AB207252. AQ160861.	 Biochemical character,  Vegetative organ - Leaf	Os06g0349700	LOC_Os06g24180.1				GO:0046424 - ferulate 5-hydroxylase activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0005783 - endoplasmic reticulum, GO:0009055 - electron carrier activity, GO:0010224 - response to UV-B		
13675	_	OsF5HL2, F5HL2, CYP84A6, OsCYP84A6	_	Ferulate-5-hydroxylase 2, ferule-5-hydroxylase-like 2, Cytochrome P450 84A6			3	LOC_Os03g02180. AB207253.	 Biochemical character,  Vegetative organ - Leaf	Os03g0112900	LOC_Os03g02180.1				GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0009807 - lignan biosynthetic process, GO:0046424 - ferulate 5-hydroxylase activity, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010224 - response to UV-B, GO:0009055 - electron carrier activity, GO:0005783 - endoplasmic reticulum	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
13676	_	BIP103	_	brassinosteroid receptor kinase (BRI1)-interacting protein 103, BRI1-interacting protein 103, brassinosteroid receptor kinase-interacting protein 103			9	AB117987.		Os09g0346400	LOC_Os09g17730.2, LOC_Os09g17730.1				GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum		
13677	_	BIP131	_	brassinosteroid receptor kinase (BRI1)-interacting protein 131, BRI1-interacting protein 131, brassinosteroid receptor kinase-interacting protein 131			8	AB117988. LOC_Os08g30060. proton pump interactor in Soda et al. 2016.	 Tolerance and resistance - Stress tolerance	Os08g0390000	LOC_Os08g30060.2, LOC_Os08g30060.1				GO:0009628 - response to abiotic stimulus, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0006950 - response to stress	TO:0000168 - abiotic stress trait	
13678	_	BIP115, OsRH18	_	brassinosteroid receptor kinase (BRI1)-interacting protein 115, BRI1-interacting protein 115, brassinosteroid receptor kinase-interacting protein 115, RNA helicase 18			1	AB118002. Q761Z9. LOC_Os01g07080. DEAD-box RNA helicase protein.	 Biochemical character	Os01g0164500	LOC_Os01g07080.2, LOC_Os01g07080.1				GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
13679	_	BIP124	_	brassinosteroid receptor kinase (BRI1)-interacting protein 124, BRI1-interacting protein 124, brassinosteroid receptor kinase-interacting protein 124			11	AB118011. LOC_Os11g38920.		Os11g0602300	LOC_Os11g38920.2, LOC_Os11g38920.1				GO:0016021 - integral to membrane		
13680	_	BIP129	_	brassinosteroid receptor kinase (BRI1)-interacting protein 129, BRI1-interacting protein 129, brassinosteroid receptor kinase-interacting protein 129			8	AB118016.		Os08g0519400	LOC_Os08g40790.4, LOC_Os08g40790.3, LOC_Os08g40790.2, LOC_Os08g40790.1				GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane		
13681	_	OsBIP110, BIP110, OsUBP7-4, UBP7-4, OsUBP28, UBP28	_	brassinosteroid receptor kinase (BRI1)-interacting protein 110, BRI1-interacting protein 110, brassinosteroid receptor kinase-interacting protein 110, ubiquitin-specific processing protease 7-4			6	AB117997. OsUBP28 in Ma et al. 2019.	 Biochemical character	Os06g0184300	LOC_Os06g08530.4, LOC_Os06g08530.3, LOC_Os06g08530.1, LOC_Os06g08530.2, LOC_Os06g08530.5				GO:0004221 - ubiquitin thiolesterase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008234 - cysteine-type peptidase activity		PO:0009029 - stamen 
13682	_	BIP112	_	brassinosteroid receptor kinase (BRI1)-interacting protein 112, BRI1-interacting protein 112, brassinosteroid receptor kinase-interacting protein 112			1	AB117999.		Os01g0924900	LOC_Os01g70020.1				GO:0003677 - DNA binding		
13683	_	BIP106	_	brassinosteroid receptor kinase (BRI1)-interacting protein 106, BRI1-interacting protein 106, brassinosteroid receptor kinase-interacting protein 106			4	AB117993.		Os04g0501600	LOC_Os04g42320.1				GO:0003677 - DNA binding		
13684	_	BIP135	_	brassinosteroid receptor kinase (BRI1)-interacting protein 135, BRI1-interacting protein 135, brassinosteroid receptor kinase-interacting protein 135			2	AB118021.		Os02g0612800	LOC_Os02g39920.1				GO:0003677 - DNA binding		
13685	_	BIP101	_	brassinosteroid receptor kinase (BRI1)-interacting protein 101, BRI1-interacting protein 101, brassinosteroid receptor kinase-interacting protein 101			3	AB117989.		Os03g0350100	LOC_Os03g22730.1				GO:0005730 - nucleolus, GO:0016020 - membrane		
13686	_	BIP102	_	brassinosteroid receptor kinase (BRI1)-interacting protein 102, BRI1-interacting protein 102, brassinosteroid receptor kinase-interacting protein 102			3	AB117990.		Os03g0350300	LOC_Os03g22740.1				GO:0016020 - membrane, GO:0005730 - nucleolus		
13687	_	BIP104	_	brassinosteroid receptor kinase (BRI1)-interacting protein 104, BRI1-interacting protein 104, brassinosteroid receptor kinase-interacting protein 104			1	AB117991. Q9LGR0.	 Other	Os01g0184900	LOC_Os01g08970.2, LOC_Os01g08970.1				GO:0005730 - nucleolus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005694 - chromosome, GO:0006281 - DNA repair, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006260 - DNA replication		
13688	_	BIP127	_	brassinosteroid receptor kinase (BRI1)-interacting protein 127, BRI1-interacting protein 127, brassinosteroid receptor kinase-interacting protein 127			12	AB118014.	 Other	Os12g0613300	LOC_Os12g41920.3, LOC_Os12g41920.2, LOC_Os12g41920.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0006334 - nucleosome assembly, GO:0046686 - response to cadmium ion, GO:0009723 - response to ethylene stimulus, GO:0043047 - single-stranded telomeric DNA binding, GO:0003691 - double-stranded telomeric DNA binding, GO:0003682 - chromatin binding, GO:0000786 - nucleosome, GO:0009739 - response to gibberellin stimulus		
13689	_	BIP133	_	brassinosteroid receptor kinase (BRI1)-interacting protein 133, BRI1-interacting protein 133, brassinosteroid receptor kinase-interacting protein 133			7	AB118019.	 Other	Os07g0139500	LOC_Os07g04700.6, LOC_Os07g04700.5, LOC_Os07g04700.3, LOC_Os07g04700.2, LOC_Os07g04700.1				GO:0003682 - chromatin binding, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0009688 - abscisic acid biosynthetic process		
13690	_	BIP113	_	brassinosteroid receptor kinase (BRI1)-interacting protein 113, BRI1-interacting protein 113, brassinosteroid receptor kinase-interacting protein 113			8	AB118000.	 Other	Os08g0113200	LOC_Os08g02130.2, LOC_Os08g02130.1				GO:0003723 - RNA binding, GO:0009793 - embryonic development ending in seed dormancy, GO:0000166 - nucleotide binding, GO:0009560 - embryo sac egg cell differentiation, GO:0006397 - mRNA processing, GO:0005634 - nucleus		
13691	_	BIP108	_	brassinosteroid receptor kinase (BRI1)-interacting protein 108, BRI1-interacting protein 108, brassinosteroid receptor kinase-interacting protein 108, development-specific protein 217, EBER-associated protein			3	AB117995. D15732, D15514.	 Other	Os03g0343500	LOC_Os03g22340.1				GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0005886 - plasma membrane		
13692	_	BIP123, RPL24a, OsRPL24a	_	brassinosteroid receptor kinase (BRI1)-interacting protein 123, BRI1-interacting protein 123, brassinosteroid receptor kinase-interacting protein 123, ribosomal protein L24a			1	LOC_Os01g59990.1 AB118010. GO:1902626: assembly of large subunit precursor of pre ribosome. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0815800	LOC_Os01g59990.2, LOC_Os01g59990.1				GO:0009414 - response to water deprivation, GO:0000027 - ribosomal large subunit assembly, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0009734 - auxin mediated signaling pathway, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0048467 - gynoecium development	TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	PO:0000003 - whole plant , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0020032 - plumule , PO:0020031 - radicle , PO:0009006 - shoot system , PO:0009005 - root , PO:0020103 - flag leaf , PO:0009046 - flower 
13693	_	BIP107	_	brassinosteroid receptor kinase (BRI1)-interacting protein 107, BRI1-interacting protein 107, brassinosteroid receptor kinase-interacting protein 107			9	AB117994.	 Other	Os09g0326900	LOC_Os09g15775.1, LOC_Os09g15770.1				GO:0016070 - RNA metabolic process, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003743 - translation initiation factor activity		
13694	_	BIP126	_	brassinosteroid receptor kinase (BRI1)-interacting protein 126, BRI1-interacting protein 126, brassinosteroid receptor kinase-interacting protein 126			8	AB118013.	 Other	Os08g0304900	LOC_Os08g21330.3, LOC_Os08g21330.1				GO:0003684 - damaged DNA binding, GO:0006284 - base-excision repair, GO:0006289 - nucleotide-excision repair, GO:0019104 - DNA N-glycosylase activity, GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity, GO:0008270 - zinc ion binding		
13695	_	BIP109	_	brassinosteroid receptor kinase (BRI1)-interacting protein 109, BRI1-interacting protein 109, brassinosteroid receptor kinase-interacting protein 109			11	AB117996.		Os11g0703400	LOC_Os11g47710.1				GO:0015031 - protein transport		
13696	_	BIP111	_	brassinosteroid receptor kinase (BRI1)-interacting protein 111, BRI1-interacting protein 111, brassinosteroid receptor kinase-interacting protein 111			9	AB117998.	 Other	Os09g0116400	LOC_Os09g02810.1				GO:0010197 - polar nucleus fusion, GO:0005730 - nucleolus, GO:0015031 - protein transport		
13697	_	BIP116	_	brassinosteroid receptor kinase (BRI1)-interacting protein 116, BRI1-interacting protein 116, brassinosteroid receptor kinase-interacting protein 116			3	AB118003.		Os03g0799100	LOC_Os03g58480.2, LOC_Os03g58480.1						
13698	_	BIP117	_	brassinosteroid receptor kinase (BRI1)-interacting protein 117, BRI1-interacting protein 117, brassinosteroid receptor kinase-interacting protein 117			12	AB118004.		Os12g0564600	LOC_Os12g37720.1				GO:0008270 - zinc ion binding, GO:0009793 - embryonic development ending in seed dormancy, GO:0000956 - nuclear-transcribed mRNA catabolic process, GO:0003676 - nucleic acid binding		
13699	_	BIP118	_	brassinosteroid receptor kinase (BRI1)-interacting protein 118, BRI1-interacting protein 118, brassinosteroid receptor kinase-interacting protein 118			2	AB118005.		Os02g0200800 	LOC_Os02g10690.2, LOC_Os02g10690.1						
13700	_	BIP119	_	brassinosteroid receptor kinase (BRI1)-interacting protein 119, BRI1-interacting protein 119, brassinosteroid receptor kinase-interacting protein 119			9	AB118006. Q67J19.		Os09g0459500	LOC_Os09g28550.1				GO:0006629 - lipid metabolic process, GO:0009742 - brassinosteroid mediated signaling		
13701	_	BIP120	_	brassinosteroid receptor kinase (BRI1)-interacting protein 120, BRI1-interacting protein 120, brassinosteroid receptor kinase-interacting protein 120			9	AB118007.	 Biochemical character	Os09g0409950	LOC_Os09g24440.1				GO:0009506 - plasmodesma, GO:0009630 - gravitropism, GO:0008237 - metallopeptidase activity, GO:0008270 - zinc ion binding		
13702	_	BIP121	_	brassinosteroid receptor kinase (BRI1)-interacting protein 121, BRI1-interacting protein 121, brassinosteroid receptor kinase-interacting protein 121			2	AB118008.	 Other	Os02g0122300	LOC_Os02g02990.1				GO:0033290 - eukaryotic 48S preinitiation complex, GO:0001731 - formation of translation preinitiation complex, GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0016020 - membrane, GO:0003743 - translation initiation factor activity, GO:0006413 - translational initiation		
13703	_	BIP128	_	brassinosteroid receptor kinase (BRI1)-interacting protein 128, BRI1-interacting protein 128, brassinosteroid receptor kinase-interacting protein 128			1	AB118015.		Os01g0179300	LOC_Os01g08410.1				GO:0005507 - copper ion binding		
13704	_	BIP130	_	brassinosteroid receptor kinase (BRI1)-interacting protein 130, BRI1-interacting protein 130, brassinosteroid receptor kinase-interacting protein 130			5	AB118017.		Os05g0113500	LOC_Os05g02260.4, LOC_Os05g02260.3, LOC_Os05g02260.2, LOC_Os05g02260.1				GO:0005507 - copper ion binding		
13705	_	BIP132	_	brassinosteroid receptor kinase (BRI1)-interacting protein 132, BRI1-interacting protein 132, brassinosteroid receptor kinase-interacting protein 132			12	AB118018.		Os12g0613500	LOC_Os12g41930.3, LOC_Os12g41930.2, LOC_Os12g41930.1				GO:0005730 - nucleolus		
13706	_	BIP134, OsBIP134	_	brassinosteroid receptor kinase (BRI1)-interacting protein 134, BRI1-interacting protein 134, brassinosteroid receptor kinase-interacting protein 134			12	AB118020. OsCaM1 target gene.		Os12g0271600	LOC_Os12g17310.1				GO:0005886 - plasma membrane		
13708	_		_	U1 snRNA, U1-snRNA, U1 small nuclear RNA				DQ530626, DQ530627, DQ530628, DQ530629.									
13709	_		_	U6 snRNA, U6-snRNA, U6 small nuclear RNA				DQ649294, DQ649295, DQ649296, DQ649297.									
13710	_		_	U4 snRNA, U4-snRNA, U4 small nuclear RNA				DQ649298, DQ649299, DQ649300, DQ649301.									
13711	_	GOS2, OseIF1, OsGOS2, SUI1, PtfS	_	translation initiation factor eIF1, protein translation factor SUI1			7	X51910. A6MZM2, Q0D5W6. D10959 (partial cds). FJ358538. AF094774. AU175087, AU175088, AU077773, AU077774. LOC_Os07g34589.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0529800	LOC_Os07g34589.6, LOC_Os07g34589.4, LOC_Os07g34589.3, LOC_Os07g34589.2				GO:0003743 - translation initiation factor activity, GO:0006417 - regulation of translation	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000432 - temperature response trait	
13712	ADKA	Adk-a	ADENYLATE KINASE A	adenylate kinase a	ADENYLATE KINASE A		12	D10334. Q08479. D10429 (partial cds).	 Biochemical character	Os12g0236400	LOC_Os12g13380.1				GO:0005739 - mitochondrion, GO:0005507 - copper ion binding, GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0006163 - purine nucleotide metabolic process, GO:0005886 - plasma membrane, GO:0004017 - adenylate kinase activity		
13713	ADKB	Adk-b	ADENYLATE KINASE B	adenylate kinase b	ADENYLATE KINASE B		11	D10334. Q08480.	 Biochemical character	Os11g0312400					GO:0004017 - adenylate kinase activity, GO:0046686 - response to cadmium ion, GO:0005739 - mitochondrion, GO:0006163 - purine nucleotide metabolic process, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0005507 - copper ion binding		
13714	_	GSC 233, AldC-2	_	fructose-diphosphate aldolase, aldolase isozyme C-2, aldolase C-2, cytoplasmic aldolase C-2			5	gravity specific cDNA. D11137, S56877. X53130. P17784. D23133. Fructose-bisphosphate aldolase. GO:0080167: response to karrikin. 	 Tolerance and resistance - Stress tolerance	Os05g0402700	LOC_Os05g33380.1				GO:0005740 - mitochondrial envelope, GO:0005730 - nucleolus, GO:0005618 - cell wall, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0006096 - glycolysis, GO:0005507 - copper ion binding, GO:0005737 - cytoplasm, GO:0046686 - response to cadmium ion, GO:0005829 - cytosol, GO:0048046 - apoplast, GO:0004332 - fructose-bisphosphate aldolase activity		
13715	_	GSC 381, OsLEA6	_	group 6 Late Embryogenesis Abundant (LEA) protein, late embryogenesis abundant protein 6			9	gravity specific cDNA. D11138, S56878. Q07078. EEE69924. two identical copies of the LEA6 gene(Os09g0482300 and Os09g0482550).	 Tolerance and resistance - Stress tolerance	Os09g0482300					GO:0009651 - response to salt stress, GO:0048046 - apoplast, GO:0005829 - cytosol, GO:0005730 - nucleolus, GO:0005618 - cell wall, GO:0071277 - cellular response to calcium ion, GO:0006952 - defense response, GO:0005739 - mitochondrion, GO:0009414 - response to water deprivation, GO:0050821 - protein stabilization, GO:0006457 - protein folding, GO:0048366 - leaf development, GO:0005886 - plasma membrane, GO:0010286 - heat acclimation, GO:0009908 - flower development, GO:0005524 - ATP binding	TO:0000188 - drought sensitivity, TO:0000615 - abscisic acid sensitivity	
13716	_	Prol-21, pro13b.2, PROLM20	_	13-kD prolamin, Prolamin 20			7	D11385, S39468. Q42465. AK242799, Os07g0219300, LOC_Os07g11910 (Yoon et al. 2012). PROLM20 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0219300	LOC_Os07g11910.1				GO:0005773 - vacuole, GO:0033095 - aleurone grain, GO:0045735 - nutrient reservoir activity, GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
13717	_	RP-2 or RP-4, prx13	_	peroxidase component RP-2 or RP-4, class III peroxidase 13			1	RP-2 and/or RP-4: D10253, S80193. BN000542.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0326100	LOC_Os01g22249.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
13719	_	RP-6	_	peroxidase component RP-6					 Biochemical character						GO:0004601 - peroxidase activity		
13720	_	RP-7	_	peroxidase component RP-7					 Biochemical character						GO:0004601 - peroxidase activity		
13721	_	RP-I	_	peroxidase component RP-I					 Biochemical character						GO:0004601 - peroxidase activity		
13722	_		_	copia-like retrotransposon reverse transcriptase				M94492.	 Other								
13725	_		_	25S ribosomal RNA, 25S rRNA				M11585.									
13726	_		ORYZAIN BETA CHAIN	oryzain beta	ORYZAIN BETA CHAIN		4	D90407. P25777.	 Biochemical character	Os04g0670200	LOC_Os04g57440.2, LOC_Os04g57440.1				GO:0006508 - proteolysis, GO:0004197 - cysteine-type endopeptidase activity		
13727	_		ORYZAIN GAMMA CHAIN	oryzain gamma	ORYZAIN GAMMA CHAIN		9	D90408. P25778.	 Biochemical character	Os09g0442300	LOC_Os09g27030.2				GO:0006508 - proteolysis, GO:0007568 - aging, GO:0009723 - response to ethylene stimulus, GO:0004197 - cysteine-type endopeptidase activity, GO:0005773 - vacuole		
13728	_	atpA, RMtATPa	_	F1-ATPase alpha subunit, mitochondrial ATP synthase a			Mt	X51422. P0C522.	 Biochemical character						GO:0005739 - mitochondrion, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0005730 - nucleolus, GO:0015986 - ATP synthesis coupled proton transport, GO:0009451 - RNA modification, GO:0006979 - response to oxidative stress, GO:0005618 - cell wall, GO:0009941 - chloroplast envelope, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0005886 - plasma membrane, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0005773 - vacuole, GO:0008270 - zinc ion binding, GO:0005524 - ATP binding, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0050897 - cobalt ion binding, GO:0005743 - mitochondrial inner membrane, GO:0008266 - poly(U) RNA binding, GO:0005507 - copper ion binding		
13729	_	atp9, RMtATP9, aatp9	_	F0-atpase proteolipid, mitochondrial ATP synthase 9, ATP synthase F0 subunit 9			Mt	LOC_Osm1g00430. X16936. P0C518, P0C519. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99366 (cultivar Nipponbare), DQ167807 (isolate PA64S). D38481. BA000029: BAC19885 (Nipponbare complete mitochondrial genome). JN861111: AER13031, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03705 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19885 (DQ167400: AAZ99366) and JN861111: AER13031 (JF281153: AEZ03705) are in conflict.	 Biochemical character		LOC_Osm1g00430				GO:0005739 - mitochondrion, GO:0008289 - lipid binding, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0031966 - mitochondrial membrane, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0009451 - RNA modification		
13730	_	cox3, coxIII, cox3a, cox3b, cox3c	_	cytochrome oxidase subunit 3, mitochondrial respiratory chain complex IV subunit 3, Cytochrome c oxidase subunit 3			Mt	LOC_Osm1g00110. X17040. P14852. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99391 (cultivar Nipponbare), DQ167807 (isolate PA64S). M74241.     JN402178-JN402180 (O. sativa and O. rufipogon). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19853 (Nipponbare complete mitochondrial genome). JN861111: AER12991, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03745 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19853 and DQ167400: AAZ99391 (JN861111 and JF281153) are in conflict.	 Biochemical character		LOC_Osm1g00110				GO:0005739 - mitochondrion, GO:0019646 - aerobic electron transport chain, GO:0004129 - cytochrome-c oxidase activity, GO:0016021 - integral to membrane, GO:0005743 - mitochondrial inner membrane		
13731	_	Prol-22, pro13b.3, PROLM22	_	prolamin 22			7	X53856. EF122445. LOC_Os07g11920. Os07g0220050 (obsolete)  (in Yoon et al. 2012, Ncbi, UniProt). 13 kDa prolamin. PROLM22 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0219400	LOC_Os07g11920.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
13732	_		_	prolamin			5	X53857.	 Seed - Physiological traits - Storage substances								
13733	_		_	glutelin			1	X52153 (promoter sequence).	 Seed - Physiological traits - Storage substances								
13734	_	Prol-01, CysR10, crP10, pro10.1	_	10kDa prolamin, sulfur-rich 10 kDa prolamin, 10 kDa sulfurrich prolamin, cysteine-rich 10kDa prolamin, Cys-rich 10-kDa prolamin			3	X17074. X15231. X84649. AY427572 (promoter). Q0DN94. L36604. A2XMB2. X51487-X51495 (Oryza rufipogon and Oryza longistaminata). EF122438. LOC_Os03g55730 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os03g0766100					GO:0005783 - endoplasmic reticulum, GO:0005773 - vacuole, GO:0033095 - aleurone grain, GO:0045735 - nutrient reservoir activity, GO:0042735 - protein body	TO:0002661 - seed maturation	PO:0009089 - endosperm 
13735	_	cob, cob-1, cob-like	_	apocytochrome b			Mt	LOC_Osm1g00480. X17064. D83009, X53710. P0C523, P0C524. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99352 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19890 (Nipponbare complete mitochondrial genome). JN861111: AER12986 (indica Hassawi complete mitochondrial genome). JF281153: AEZ03723 (indica IR6888 complete mitochondrial genome). cob-like in JN861111.	 Biochemical character		LOC_Osm1g00480				GO:0016491 - oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005743 - mitochondrial inner membrane, GO:0046872 - metal ion binding, GO:0005739 - mitochondrion, GO:0009451 - RNA modification, GO:0016021 - integral to membrane, GO:0070469 - respiratory chain, GO:0022904 - respiratory electron transport chain		
13736	_	atpB, AtpB, atpcf1, ATPbeta	_	ATP synthase beta subunit, ATPase beta subunit, ATP synthase CF1 beta subunit			Pt	D00432. P12085. LOC_Osp1g00410. M31464. X15901: CAA34003 (Japonica Group chloroplast genome). FJ908096-FJ908110 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00410				GO:0005524 - ATP binding, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0008270 - zinc ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0031977 - thylakoid lumen, GO:0042777 - plasma membrane ATP synthesis coupled proton transport, GO:0010287 - plastoglobule, GO:0010319 - stromule, GO:0005618 - cell wall, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009536 - plastid, GO:0009409 - response to cold, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1)		
13737	_	atpE	_	ATP synthase epsilon subunit, ATPase epsilon subunit, ATP synthase CF1 epsilon subunit, ATP synthase CF1 epsilon chain			Pt	LOC_Osp1g00400. D00432. P0C2Z2, P0C2Z3. M31464. X15901:CAA34002 (Japonica Group chloroplast genome). AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46126: Nip060 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207:ADD62839 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00400				GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0005524 - ATP binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0042777 - plasma membrane ATP synthesis coupled proton transport		
13738	_		_	lectin, Agglutinin			4	M24504. Q0JF21. AU174453.	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance	Os04g0173800	LOC_Os04g09390.1				GO:0008061 - chitin binding	TO:0000432 - temperature response trait	
13739	_	G11A	_				6	J04556. A2YBX5. Q0DCT8.		Os06g0291600	LOC_Os06g18830.1				GO:0005730 - nucleolus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005737 - cytoplasm		
13740	_	coxI, COX1, cox1-1, cox1	_	cytochrome oxidase subunit I, cytochrome c oxidase subunit 1			Mt	LOC_Osm1g00550. M57903, X15990. P14578. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99388 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19897 (Nipponbare complete mitochondrial genome). JN861111: AER12979, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03713 (indica IR6888 complete mitochondrial genome). cox1-1 in JN861111 and JN861112.	 Biochemical character		LOC_Osm1g00550				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0006119 - oxidative phosphorylation, GO:0009055 - electron carrier activity, GO:0070469 - respiratory chain, GO:0004129 - cytochrome-c oxidase activity, GO:0020037 - heme binding, GO:0005739 - mitochondrion, GO:0022900 - electron transport chain, GO:0005507 - copper ion binding, GO:0005743 - mitochondrial inner membrane, GO:0009060 - aerobic respiration		
13741	_	H3R-11	_	H3 histone H3R-11			6	X13678. Q2RAD9. LOC_Os06g06460. Os06g0159500 (in Rap1 (build3), Rap3 (build5)).	 Other	Os06g0159450	LOC_Os06g06460.1				GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0000786 - nucleosome		
13742	_	H3R-21	_	H3 histone H3R-21			11	X13680. Q2RAD9. D15756.	 Other	Os11g0155900	LOC_Os11g05730.1				GO:0000786 - nucleosome, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006334 - nucleosome assembly		
13743	RPS14	rps14	RIBOSOMAL PROTEIN S14	chloroplast ribosomal protein S14, ribosomal protein S14	RIBOSOMAL PROTEIN S14		Pt	LOC_Osp1g00320. X13208. P0C467. P0C466. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46119: Nip048 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33994 (Japonica Group chloroplast genome). GU592207:ADD62832 (Japonica chloroplast comlete genome). JN861109 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00320				GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
13744	_	atpE.p	_	ATP synthase epsilon subunit pseudogene, chloroplast-encoded atpE pseudogene			Pt	M31465.									
13745	_	atpB.p	_	ATP synthase beta subunit pseudogene, chloroplast-encoded atpB pseudogene			Pt	M31465.									
13746	_	atpB.p	_	ATP synthase beta subunit pseudogene, mitochondria-encoded atpB pseudogene			Mt	M31466.									
13747	_	atpE.p	_	ATP synthase epsilon subunit pseudogene, mitochondria-encoded atpE pseudogene			Mt	M31466.									
13749	_		_	28S large subunit rRNA, 28S ribosomal RNA large subunit				M19228.									
13750	17S  rRNA	rrn17	17S RIBOSOMAL RNA	17S RIBOSOMAL RNA, 17S ribosomal RNA, 17S rRNA			2	X00755. M16845. X54194.									
13751	_	COII, coxII	_	cytochrome oxidase subunit II			Mt	X01088. P04373.	 Biochemical character						GO:0005743 - mitochondrial inner membrane, GO:0016021 - integral to membrane, GO:0005739 - mitochondrion, GO:0005507 - copper ion binding, GO:0004129 - cytochrome-c oxidase activity, GO:0009507 - chloroplast, GO:0070469 - respiratory chain, GO:0022900 - electron transport chain		
13752	_	RHL	_	Hal2-like protein, HAL2 Homolog			12	U33283. P0C5A3, Q2QWT4.	 Biochemical character	Os12g0183300	LOC_Os12g08280.1				GO:0009738 - abscisic acid mediated signaling, GO:0043157 - response to cation stress, GO:0009409 - response to cold, GO:0019204 - nucleotide phosphatase activity, GO:0046872 - metal ion binding, GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity, GO:0005634 - nucleus, GO:0009570 - chloroplast stroma, GO:0006790 - sulfur metabolic process, GO:0009414 - response to water deprivation, GO:0010587 - miRNA catabolic process, GO:0009968 - negative regulation of signal transduction, GO:0046854 - phosphoinositide phosphorylation, GO:0048573 - photoperiodism, flowering, GO:0051512 - positive regulation of unidimensional cell growth, GO:0080141 - regulation of jasmonic acid biosynthetic process		
13753	_		_	stearoyl-acyl carrier protein desaturase, Stearoyl-ACP desaturase, stearyl-ACP desaturase			4	D38753. Q40731.	 Biochemical character	Os04g0379900	LOC_Os04g31070.1				GO:0046914 - transition metal ion binding, GO:0006633 - fatty acid biosynthetic process, GO:0009507 - chloroplast, GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity		
13754	_	S27a	_	ribosomal protein-linked ubiquitin, Ubiquitin/ribosomal protein S27a, ubiquitin fused to CEP80 gene			5	L31941. P51431. D15991. LOC_Os05g06770. a ubiquitin extension protein.		Os05g0160200	LOC_Os05g06770.1				GO:0046872 - metal ion binding, GO:0003735 - structural constituent of ribosome, GO:0005634 - nucleus, GO:0005840 - ribosome, GO:0006412 - translation		
13755	RPS8	S8	RIBOSOMAL PROTEIN S8	ribosomal protein S8	RIBOSOMAL PROTEIN S8		2	D38010. P49199.		Os02g0489400	LOC_Os02g28810.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0006414 - translational elongation, GO:0003735 - structural constituent of ribosome		
13756	CPD3	cbp3, R-CPD3, OsSCP6, SCP6	TYPE III CARBOXYPEPTIDASE	type III carboxypeptidase, type III CPD, R-CPD3, serine carboxypeptidase III, carboxypeptidase III, Serine carboxypeptidase 6	TYPE III CARBOXYPEPTIDASE		2	D10985. P37891. LOC_Os02g02320. OsSCP6 in Xu et al. 2015. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0114200	LOC_Os02g02320.1				GO:0006508 - proteolysis, GO:0004185 - serine-type carboxypeptidase activity		
13757	CPD1	cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65	TYPE I CARBOXYPEPTIDASE	type I carboxypeptidase, type I CPD, serine carboxypeptidase I, Serine carboxypeptidase 65	TYPE I CARBOXYPEPTIDASE		12	D17586. P37890. FJ810961-FJ811001 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901833-DQ901859 (wild rice species). EF070046-EF070112 (O. sativa and wild rice species). JQ414564-JQ414607 (wild rice species). LOC_Os12g15470. SCPL (serine carboxypeptidase-like) protein. OsSCP65 in Xu et al. 2015. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os12g0257000	LOC_Os12g15470.3, LOC_Os12g15470.2, LOC_Os12g15470.1				GO:0004185 - serine-type carboxypeptidase activity, GO:0006508 - proteolysis		
13758	CPD3L	R-CPD3L, cbp31, OsSCP39, SCP39	TYPE III-LIKE CARBOXYPEPTIDASE	Type III-like carboxypeptidase, type III-like CPD, serine carboxypeptidase-like protein, Serine carboxypeptidase 39	TYPE III-LIKE CARBOXYPEPTIDASE		7	D17587. P52712. SCPL (serine carboxypeptidase-like) protein. LOC_Os07g29620. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os07g0479300	LOC_Os07g29620.1				GO:0005777 - peroxisome, GO:0005789 - endoplasmic reticulum membrane, GO:0006508 - proteolysis, GO:0004185 - serine-type carboxypeptidase activity, GO:0005773 - vacuole		
13760	_	YK704, Os60sP0	_	Acidic Ribosomal Phosphoprotein P0, acidic ribosomal protein P0, 60S acidic ribosomal protein P0			8	D26484. P41095. D21130. 		Os08g0130500	LOC_Os08g03640.1				GO:0009409 - response to cold, GO:0022626 - cytosolic ribosome, GO:0009651 - response to salt stress, GO:0006414 - translational elongation, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0005507 - copper ion binding, GO:0003735 - structural constituent of ribosome, GO:0046686 - response to cadmium ion, GO:0042254 - ribosome biogenesis, GO:0009507 - chloroplast, GO:0010043 - response to zinc ion		
13761	_	RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25	_	prolamin, prolamin RP6, 13 kDa prolamin, endosperm-specific gene 93, Prolamin 25			7	X65064. P17048. X14392. EF122447, Os07g0206400 LOC_Os07g10570 (Yoon et al. 2012). PROLM25 in Huang et al. 2016, Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0206400	LOC_Os07g10570.1				GO:0033095 - aleurone grain, GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body, GO:0045735 - nutrient reservoir activity, GO:0005773 - vacuole	TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
13762	_	rig, RPS15, OsRPS15	_	Rat insulinoma gene, rat insulinoma gene homolog, ribosomal protein S15, 40S ribosomal protein S15, ribosomal protein small subunit 15			7	LOC_Os07g08660. D10962. P31674. AU031252. D16075.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os07g0184300	LOC_Os07g08660.1				GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0022627 - cytosolic small ribosomal subunit, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000432 - temperature response trait, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance	
13763	_	EFA27	_	"\"EF-hand, abscisic acid responsive 27-kDa protein\""			4	D50556. A2XVG1, Q7FAX1. Ca+2-binding EF hand protein. GO:0071614: linoleic acid epoxygenase activity. GO:1990137: plant seed peroxidase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0511200	LOC_Os04g43200.2, LOC_Os04g43200.1				GO:0009269 - response to desiccation, GO:0031969 - chloroplast membrane, GO:0034389 - lipid particle organization, GO:0004392 - heme oxygenase (decyclizing) activity, GO:0005509 - calcium ion binding, GO:0005773 - vacuole, GO:0005783 - endoplasmic reticulum, GO:0005811 - lipid particle, GO:0009409 - response to cold, GO:0009620 - response to fungus, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0010118 - stomatal movement, GO:0016021 - integral to membrane, GO:0016165 - lipoxygenase activity, GO:0031408 - oxylipin biosynthetic process		
13764	_	OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4	_	Early Embryogenesis-Specific Enolase 1, Enolase 1, enolase 7, enolase 4			10	U09450. Q42971. D15335. LOC_Os10g08550. OsEno4 (AK073662) and OsEno7 (U09450) in Fukayama et al. 2014.	 Biochemical character	Os10g0167300	LOC_Os10g08550.5, LOC_Os10g08550.3, LOC_Os10g08550.1				GO:0000287 - magnesium ion binding, GO:0000015 - phosphopyruvate hydratase complex, GO:0006096 - glycolysis, GO:0004634 - phosphopyruvate hydratase activity, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
13765	_	ole16, OsEnS-72	_	16 kDa oleosin, endosperm-specific gene 72			4	U43930. Q42980. LOC_Os04g46200.		Os04g0546500	LOC_Os04g46200.1				GO:0012511 - monolayer-surrounded lipid storage body, GO:0016021 - integral to membrane		
13766	_	ole18	_	18 kDa oleosin, Oleosin KD18			3	U43931. Q10EK7. AY427563 (promoter). D15609.	 Seed - Morphological traits - Embryo,  Seed - Physiological traits - Storage substances	Os03g0699000	LOC_Os03g49190.1				GO:0016021 - integral to membrane, GO:0012511 - monolayer-surrounded lipid storage body		
13768	_	OsCycC_1, CycC_1	_	C-type cyclin, cyclin C			9	D86925. P93411. D15406. one of the 55 MED (Mediator) subunits. LOC_Os09g32680.	 Biochemical character	Os09g0504400	LOC_Os09g32680.4, LOC_Os09g32680.3, LOC_Os09g32680.2, LOC_Os09g32680.1				GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0016591 - DNA-directed RNA polymerase II, holoenzyme, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051301 - cell division		
13769	RPS11	rps11, s11-1	RIBOSOMAL PROTEIN S11	ribosomal protein S11, mitochondrial ribosomal protein S11	RIBOSOMAL PROTEIN S11		3	D85382.	 Biochemical character	Os03g0385900 	LOC_Os03g26860.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
13770	RPS11.P	rps11.p, pseudo-rps11	RIBOSOMAL PROTEIN S11 PSEUDOGENE	ribosomal protein S11 pseudogene	RIBOSOMAL PROTEIN S11 PSEUDOGENE		Mt	LOC_Osm1g00410. D85128. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400): rps11 and JF281153: rps11 are in conflict. 			LOC_Osm1g00410						
13771	_	coxVb, COX5b	_	cytochrome c oxidase subunit Vb, cytochrome c oxidase subunit 5b			1	D85381.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0612200	LOC_Os01g42650.1				GO:0004129 - cytochrome-c oxidase activity, GO:0005740 - mitochondrial envelope, GO:0008270 - zinc ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0050897 - cobalt ion binding, GO:0005739 - mitochondrion	TO:0000432 - temperature response trait	
13772	_	s11-2	_	ribosomal protein S11 homolog 2				D85195. similar to mitochondrial ribosomal protein s11 gene.	 Biochemical character								
13773	_	a1	_	NADPH-dependent reductase A1			1	U87451. U70541 (AAB58474). a homolog of maize A1 gene.	 Biochemical character						GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
13774	_	OsCa-atpase	_	GA-responsive Ca2+-ATPase				U82966.	 Biochemical character								
13775	_	OsGL1-3	_	glossy1 homolog, Glossy1-homologous gene 3			6	U57338. LOC_Os06g44300. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0653000	LOC_Os06g44300.1				GO:0016491 - oxidoreductase activity, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0048235 - pollen sperm cell differentiation, GO:0016021 - integral to membrane, GO:0010025 - wax biosynthetic process, GO:0006723 - cuticle hydrocarbon biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0005886 - plasma membrane, GO:0005506 - iron ion binding	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
13776	_		_	histidyl tRNA synthetase, Histidyl-tRNA Synthetase, Histidine--tRNA ligase, Histidine:tRNA ligase			5	Z85984. P93422. D16062.	 Biochemical character	Os05g0150900	LOC_Os05g05840.1				GO:0048481 - ovule development, GO:0004821 - histidine-tRNA ligase activity, GO:0006427 - histidyl-tRNA aminoacylation, GO:0005829 - cytosol, GO:0016841 - ammonia-lyase activity, GO:0005524 - ATP binding		
13777	_	dad-1, DAD-1, DAD1	_	defender against apoptotic death 1			4	A Putative Programmed Cell Death Suppressor. D89726, D89727. Q0JDK9.	 Biochemical character	Os04g0397000	LOC_Os04g32550.1				GO:0016021 - integral to membrane, GO:0006486 - protein amino acid glycosylation, GO:0006915 - apoptosis, GO:0008250 - oligosaccharyltransferase complex, GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity		
13778	DXS1	CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1	CLA1 transketolase-like protein, 1-Deoxy-D-xylulose 5-phosphate synthase 1, transketolase 1	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1		5	LOC_Os05g33840. Transketolase-Like Protein Homologous to the Arabidopsis CLA1. AF024512. O22567. GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0408900	LOC_Os05g33840.1				GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0005829 - cytosol, GO:0046872 - metal ion binding, GO:0016114 - terpenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process, GO:0009570 - chloroplast stroma, GO:0009416 - response to light stimulus, GO:0009228 - thiamin biosynthetic process	TO:0000075 - light sensitivity	
13779	_	r1	_	R-like gene 1, resistance gene 1			5	AF032688. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
13780	_	r2	_	R-like gene 2, resistance gene 2			11	AF032689. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13781	_	r4	_	R-like gene 4, resistance gene 4				AF032691. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13782	_	r5	_	R-like gene 5, resistance gene 5			11	AF032692. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13783	_	r6	_	R-like gene 6, resistance gene 6				AF032693. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13784	_	r7	_	R-like gene 7, resistance gene 7			7	AF032694. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13785	_	r8	_	R-like gene 8, resistance gene 8				AF032695. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13786	_	r9	_	R-like gene 9, resistance gene 9			3	AF032696. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13787	_	r10	_	R-like gene 10, resistance gene 10			11	AF032697. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13788	_	r11	_	R-like gene 11, resistance gene 11			11	AF032698. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
13789	_	r12	_	R-like gene 12, resistance gene 12			11	AF032699. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
13790	_	r13	_	R-like gene 13, resistance gene 13			5	AF032700. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13791	_	r14	_	R-like gene 14, resistance gene 14			9	AF032701. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13792	_	r15	_	R-like gene 15, resistance gene 15			9	AF032702. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13793	_	r16	_	R-like gene 16, resistance gene 16			9	AF032703. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
13794	_	r3	_	R-like gene 3, resistance gene 3			1	AF032690. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13795	_	C00481	_				11	class III chitinase. D55708.	 Biochemical character	Os11g0701200 	LOC_Os11g47530.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
13796	_	C10122	_				8	class III chitinase. D55709.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0518900	LOC_Os08g40690.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
13797	_	C10150	_				11	class III chitinase. D55710.	 Biochemical character	Os11g0701400	LOC_Os11g47550.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
13798	_	C10501	_				1	class III chitinase. D55711. D22210, C96640.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0860500	LOC_Os01g64110.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity	TO:0000432 - temperature response trait	
13799	_	C10728, OsChib3a	_				1	class III chitinase. D55713. pathogenesis-related (PR) gene. PR8/chitinase class III. BF889433.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0660200	LOC_Os01g47070.1				GO:0004568 - chitinase activity, GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process	TO:0000074 - blast disease	
13800	_	C10923	_				11	class III chitinase. D55714.	 Biochemical character	Os11g0700900	LOC_Os11g47500.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
13801	_	r-Os1	_	Romani-Os1, Gypsy-like retrotransposon Romani-Os1				AJ002611, AJ002612.									
13802	SMT1-1	Ossmt1-1, OsSMT1-1	STEROL METHYLTRANSFERASE 1-1 	sterol methyltransferase 1-1, sterol-C24-methyltransferase 1-1	STEROL METHYLTRANSFERASE 1-1 		7	AF042332, D24567. Q6ZIX2. GO:1901305: negative regulation of spermidine biosynthetic process.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os07g0206700	LOC_Os07g10600.2, LOC_Os07g10600.1				GO:0003838 - sterol 24-C-methyltransferase activity, GO:0019745 - pentacyclic triterpenoid biosynthetic process, GO:0009611 - response to wounding, GO:0006597 - spermine biosynthetic process, GO:0016126 - sterol biosynthetic process, GO:0009805 - coumarin biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0005773 - vacuole, GO:0009414 - response to water deprivation, GO:0016132 - brassinosteroid biosynthetic process, GO:0006084 - acetyl-CoA metabolic process, GO:0006598 - polyamine catabolic process, GO:0009506 - plasmodesma, GO:0042398 - cellular amino acid derivative biosynthetic process, GO:0009793 - embryonic development ending in seed dormancy, GO:0005783 - endoplasmic reticulum	TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000136 - relative water content, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000040 - panicle length	
13803	_	Ossmt2-1	_	sterol methyltransferase 2-1			3	AF042333, C28584. O82427.	 Biochemical character	Os03g0136200	LOC_Os03g04340.1				GO:0032876 - negative regulation of DNA endoreduplication, GO:0016021 - integral to membrane, GO:0009825 - multidimensional cell growth, GO:0016126 - sterol biosynthetic process, GO:0010051 - xylem and phloem pattern formation, GO:0030797 - 24-methylenesterol C-methyltransferase activity		
13804	_		_	MS5 homolog			5	AF031609, D39857.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0506000	LOC_Os05g43040.1				GO:0010438 - cellular response to sulfur starvation, GO:0006792 - regulation of sulfur utilization		
13805	_	RPE	_	D-ribulose-5-phosphate 3-epimerase, chl-RPEase, chloroplast RPEase, chloroplast D-Ribulose-5-phosphate 3-Epimerase			3	D39200, D48105, AF047444. Q9ZTP5.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0169100	LOC_Os03g07300.1				GO:0009409 - response to cold, GO:0006098 - pentose-phosphate shunt, GO:0046872 - metal ion binding, GO:0048046 - apoplast, GO:0004750 - ribulose-phosphate 3-epimerase activity, GO:0009793 - embryonic development ending in seed dormancy, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0009624 - response to nematode, GO:0042742 - defense response to bacterium, GO:0019253 - reductive pentose-phosphate cycle, GO:0010319 - stromule, GO:0009941 - chloroplast envelope		
13808	_	OsDD3	_	type 1a plasma membrane receptor DD3				AF069773.	 Tolerance and resistance - Stress tolerance								
13809	_	Ros1	_	retrotransposon of Oryza sativa 1				Ty1-copia group retrotransposon. AB017978.	 Other								
13810	_	Ros2	_	retrotransposon of Oryza sativa 2				Ty1-copia group retrotransposon. AB017979.	 Other								
13811	_	Ros3	_	retrotransposon of Oryza sativa 3				Ty1-copia group retrotransposon. AB017980.	 Other								
13812	_	Ros4	_	retrotransposon of Oryza sativa 4				Ty1-copia group retrotransposon. AB017981.	 Other								
13813	_	Ros5	_	retrotransposon of Oryza sativa 5				Ty1-copia group retrotransposon. AB017982.	 Other								
13814	_	Ros6	_	retrotransposon of Oryza sativa 6				Ty1-copia group retrotransposon. AB017983.	 Other								
13815	_	Ros7	_	retrotransposon of Oryza sativa 7				Ty1-copia group retrotransposon. AB017984.	 Other								
13816	_	Ros8	_	retrotransposon of Oryza sativa 8				Ty1-copia group retrotransposon. AB017985.	 Other								
13817	_	Ros9	_	retrotransposon of Oryza sativa 9				Ty1-copia group retrotransposon. AB017986.	 Other								
13818	_	Ros10	_	retrotransposon of Oryza sativa 10				Ty1-copia group retrotransposon. AB017987.	 Other								
13819	_	Ros11	_	retrotransposon of Oryza sativa 11				Ty1-copia group retrotransposon. AB017988.	 Other								
13820	_	Ros12	_	retrotransposon of Oryza sativa 12				Ty1-copia group retrotransposon. AB017989.	 Other								
13821	_	Ros13	_	retrotransposon of Oryza sativa 13				Ty1-copia group retrotransposon. AB017990.	 Other								
13822	_	Ros14	_	retrotransposon of Oryza sativa 14				Ty1-copia group retrotransposon. AB017991.	 Other								
13823	_	Ros15	_	retrotransposon of Oryza sativa 15				Ty1-copia group retrotransposon. AB017992.	 Other								
13824	_	Ros16	_	retrotransposon of Oryza sativa 16				Ty1-copia group retrotransposon. AB017993.	 Other								
13825	_	Ros17	_	retrotransposon of Oryza sativa 17				Ty1-copia group retrotransposon. AB017994.	 Other								
13826	_	Ros18	_	retrotransposon of Oryza sativa 18				Ty1-copia group retrotransposon. AB017995.	 Other								
13827	_	Ros19	_	retrotransposon of Oryza sativa 19				Ty1-copia group retrotransposon. AB017996.	 Other								
13828	_	Ros20	_	retrotransposon of Oryza sativa 20				Ty1-copia group retrotransposon. AB017997.	 Other								
13829	_	Ros21	_	retrotransposon of Oryza sativa 21				Ty1-copia group retrotransposon. AB017998.	 Other								
13830	_	Ros22	_	retrotransposon of Oryza sativa 22				Ty1-copia group retrotransposon. AB017999.	 Other								
13831	_	Ros23	_	retrotransposon of Oryza sativa 23				Ty1-copia group retrotransposon. AB018000.	 Other								
13832	_	OS-CER1, CER1	_					an Arabidopsis CER1 homolog. AF143746. GO:0071771:aldehyde decarbonylase activity.	 Biochemical character						GO:0042335 - cuticle development, GO:0046185 - aldehyde catabolic process, GO:0005506 - iron ion binding, GO:0006633 - fatty acid biosynthetic process, GO:0016021 - integral to membrane, GO:0016491 - oxidoreductase activity		
13833	HAM1	OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9	HAIRY MERISTEM 1	SCARECROW-LIKE 1, hairy meristem 1, GRAS protein 9	GRAS PROTEIN 9		2	LOC_Os02g44360. AF067401. GRAS (GAI-RGA-SCR) plant-specific transcription factor. Scarecrow transcription factor family protein.	 Reproductive organ - Heading date,  Other	Os02g0662700	LOC_Os02g44360.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0006351 - transcription, DNA-dependent	TO:0006020 - shoot apical meristem development, TO:0006021 - vegetative to reproductive phase transition trait, TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0020148 - shoot apical meristem 
13834	_	TK	_	thymidine kinase			3	AF066050. O81263.	 Biochemical character	Os03g0113100	LOC_Os03g02200.3, LOC_Os03g02200.2, LOC_Os03g02200.1				GO:0004797 - thymidine kinase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0006260 - DNA replication		
13835	_	Os8Tak1	_	Tak Receptor-Like Kinase 1			1	AF100765.		Os01g0115800	LOC_Os01g02590.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13836	_	Os8Tak2, YK21, OsRLCK12, RLCK12	_	Tak Receptor-Like Kinase 2, Receptor-like Cytoplasmic Kinase 12			1	AF100766. AF230510. LOC_Os01g02580.		Os01g0115750 	LOC_Os01g02580.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13837	_	Os8Tak3	_	Tak Receptor-Like Kinase 3			1	AF100767.		Os01g0116000 	LOC_Os01g02610.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity		
13838	_	Os8Lrk, Os8Lrk.p	_	Lrk Receptor-Like Kinase pseudogene			1	AF100764. Os8Lrk gene is located between Os01g0115800 and Os01g0116000.									
13839	_	panC, PS	_	pantothenate synthetase			3	Y10253. O24210.	 Biochemical character	Os03g0851800	LOC_Os03g63490.1				GO:0015940 - pantothenate biosynthetic process, GO:0004592 - pantoate-beta-alanine ligase activity, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0009793 - embryonic development ending in seed dormancy		
13840	_	rpl5, rpl5-1	_	ribosomal protein L5, ribosomal protein L7			Mt	LOC_Osm1g00570. AB017426. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99340 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19898 (Nipponbare complete mitochondrial genome). JN861111: AER13005, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03712 (indica IR6888 complete mitochondrial genome). rpl5-1 in JN861111 and JN861112.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other		LOC_Osm1g00570				GO:0006412 - translation, GO:0005739 - mitochondrion, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
13841	MTI3B	MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b	METALLOTHIONEIN 3B				5	LOC_Os05g11320. Metallothionein-like protein type 3. AF009959. A2Y1D7, A3B0Y1. OsMT3b in Wong et al. 2004. OsMT-I-3b in Zhou et al. 2006.	 Biochemical character	Os05g0202800	LOC_Os05g11320.1				GO:0006833 - water transport, GO:0006878 - cellular copper ion homeostasis, GO:0007389 - pattern specification process, GO:0009651 - response to salt stress, GO:0010363 - regulation of plant-type hypersensitive response, GO:0046686 - response to cadmium ion, GO:0008361 - regulation of cell size, GO:0005507 - copper ion binding, GO:0009750 - response to fructose stimulus, GO:0009926 - auxin polar transport, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0010015 - root morphogenesis, GO:0006612 - protein targeting to membrane, GO:0040007 - growth		
13842	_	COX5c	_	cytochrome c oxidase subunit 5c			12	AB027123. Q9SXX7.	 Biochemical character	Os12g0561000	LOC_Os12g37419.1				GO:0005746 - mitochondrial respiratory chain, GO:0016021 - integral to membrane		
13843	_	GAG-POL, orf1	_					AB030283. gag-pol region (gag, pro, rt,rh, int) of RIRE2.	 Other								
13844	_	GAG-POL, orf2	_					AB030283. gag-pol region (gag, pro, rt,rh, int) of RIRE2.	 Other								
13845	_	orf3, orf3'	_					AB030283. orf3 of RIRE2.	 Other								
13846	_	orf4, orf4'	_					AB030283. orf4 of RIRE2.	 Other								
13847	_	orf5, orf5'	_					AB030283. orf5 of RIRE2.	 Other								
13848	_	matK, ORF542	_	maturase K, maturase			Pt	LOC_Osp1g00120. AF148650-AF148674 (O.stiva and other wild rice species). HE574131 (Oryza meridionalis), HE586098 (Oryza coarctata). FJ908261-FJ908266 (wild rice species). P0C382, P0C383. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46105 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207:ADD62818 (Japonica chloroplast comlete genome). EU434286, EU434287 (O. rufipogon and O. sativa). X15901: CAA34008 (Japonica Group chloroplast genome). ORF within trnK intron. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). HG794000.  AF489915 (Oryza malampuzhaensis).			LOC_Osp1g00120				GO:0009451 - RNA modification, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0003723 - RNA binding, GO:0008380 - RNA splicing, GO:0008033 - tRNA processing, GO:0006397 - mRNA processing		
13849	_	CRO1, CRT	_	calreticulin 1, calreticulin			7	AB021259. Q9SLY8. a major Ca2+-sequestering protein. a calcium signaling component. D15762.	 Tolerance and resistance - Stress tolerance	Os07g0246200	LOC_Os07g14270.3, LOC_Os07g14270.2, LOC_Os07g14270.1				GO:0051082 - unfolded protein binding, GO:0006457 - protein folding, GO:0005788 - endoplasmic reticulum lumen, GO:0005509 - calcium ion binding, GO:0007275 - multicellular organismal development, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity, TO:0000432 - temperature response trait	
13850	_	UMPS1	_	UMP synthase 1			1	AF210322, AF210323, AF210324. Q9LDN2.	 Biochemical character	Os01g0951200	LOC_Os01g72240.1				GO:0004590 - orotidine-5'-phosphate decarboxylase activity, GO:0016036 - cellular response to phosphate starvation, GO:0046686 - response to cadmium ion, GO:0004588 - orotate phosphoribosyltransferase activity, GO:0006207 - 'de novo' pyrimidine base biosynthetic process		
13851	_	UMPS2	_	UMP synthase 2			1	AF210325. Q8RZA1. GO:0044205: 'de novo' UMP biosynthetic process. 	 Biochemical character	Os01g0951400 	LOC_Os01g72250.1				GO:0004588 - orotate phosphoribosyltransferase activity, GO:0006207 - 'de novo' pyrimidine base biosynthetic process, GO:0004590 - orotidine-5'-phosphate decarboxylase activity		
13852	_	PAKRP1, OsKRP1, SIP18	_	phragmoplast-associated kinesin-related protein 1, PAKRP1 homolog, SKIP interacting protein 18, SKIPa-interacting protein 18, SKIPa-interacting protein 18			4	AF210816. EU368708. LOC_Os04g28260.	 Seed	Os04g0350300 	LOC_Os04g28260.1				GO:0005874 - microtubule, GO:0000914 - phragmoplast formation, GO:0007049 - cell cycle, GO:0055046 - microgametogenesis, GO:0005856 - cytoskeleton, GO:0007018 - microtubule-based movement, GO:0008574 - plus-end-directed microtubule motor activity, GO:0009524 - phragmoplast, GO:0005871 - kinesin complex, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
13853	TNR4	Tnr4	TRANSPOSABLE DNA ELEMENT 4	transposable DNA element 4, Transposal element-4, transposon Tnr4				AB033542.	 Other						GO:0032196 - transposition		
13854	TNR5	Tnr5	TRANSPOSABLE DNA ELEMENT 5	transposable DNA element 5, Transposal element-5, transposon Tnr5				AB033543.	 Other						GO:0032196 - transposition		
13855	TNR11	Tnr11	TRANSPOSABLE DNA ELEMENT 11	transposable DNA element 11, Transposal element-11, transposon Tnr11				AB033544.	 Other						GO:0032196 - transposition		
13856	TNR12	Tnr12	TRANSPOSABLE DNA ELEMENT 12	transposable DNA element 12, Transposal element-12, transposon Tnr12				AB033545.	 Other						GO:0032196 - transposition		
13857	TNR13	Tnr13	TRANSPOSABLE DNA ELEMENT 13	transposable DNA element 13, Transposal element-13, transposon Tnr13				AB033546.	 Other						GO:0032196 - transposition		
13858	_	RIRE9	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon				AB033547.	 Other						GO:0032196 - transposition		
13859	_	RSP1, OsSub5, SUB5, OsSub6, SUB6	_	subtilase, subtilisin-like serine protease 1, Subtilisin 5, SUBTILISIN 5, Subtilisin 6, SUBTILISIN 6			1	AF200467. LOC_Os01g58240 (Os01g0794800/Os01g0795000). Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0795000	LOC_Os01g58240.1				GO:0043086 - negative regulation of catalytic activity, GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
13860	_	MetRS, MRS	_	methionyl-tRNA synthetase			6	AF040700. Q9ZTS1.	 Biochemical character	Os06g0508700	LOC_Os06g31210.1				GO:0046686 - response to cadmium ion, GO:0006431 - methionyl-tRNA aminoacylation, GO:0004825 - methionine-tRNA ligase activity, GO:0000049 - tRNA binding, GO:0005829 - cytosol, GO:0005524 - ATP binding		
13861	SAMDC2	SamDC2, AdoMetDC2, OsSAMDC2	S-ADENOSYLMETHIONINE DECARBOXYLASE 2	S-adenosylmethionine decarboxylase 2	S-ADENOSYLMETHIONINE DECARBOXYLASE 2		2	LOC_Os02g39795. AJ251899, AJ252214.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0611200 	LOC_Os02g39795.1, LOC_Os02g39790.2, LOC_Os02g39790.1				GO:0009651 - response to salt stress, GO:0006597 - spermine biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0006557 - S-adenosylmethioninamine biosynthetic process, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0006596 - polyamine biosynthetic process	TO:0006001 - salt tolerance	
13862	_	OsHPPD, HPPD, Osl30, l30	_	4-hydroxyphenylpyruvate dioxygenase, p-hydroxyphenylpyruvate dioxygenase			2	AF251065. vitamin E biosynthetic enzyme.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0168100 	LOC_Os02g07160.1				GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity, GO:0005739 - mitochondrion, GO:0005829 - cytosol, GO:0009072 - aromatic amino acid family metabolic process, GO:0010189 - vitamin E biosynthetic process, GO:0046872 - metal ion binding, GO:0006559 - L-phenylalanine catabolic process, GO:0006572 - tyrosine catabolic process, GO:0005737 - cytoplasm, GO:0006979 - response to oxidative stress, GO:0010236 - plastoquinone biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0010150 - leaf senescence	TO:0002657 - oxidative stress, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
13863	_		_	branched chain alpha-keto acid dehydrogenase E1-alpha subunit, senescence-associated dehydrogenase			12	AF251067.	 Biochemical character	Os12g0183100	LOC_Os12g08260.7, LOC_Os12g08260.6, LOC_Os12g08260.5, LOC_Os12g08260.4, LOC_Os12g08260.3, LOC_Os12g08260.2, LOC_Os12g08260.1				GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor		
13864	_	Osh69	_	alkaline alpha-galactosidase			8	AF251068. Glycosyltransferase. raffinose synthase family protein.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os08g0495800	LOC_Os08g38710.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0010150 - leaf senescence, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
13865	_	Osh36, OsH36, H36, OsAMTR1, AMTR1	_	alanine:glyoxylate aminotransferase-like protein, aminotransferase 1			5	AF251070. GO:1901002: positive regulation of response to salt stress. GO:2000070: regulation of response to water deprivation.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0475400	LOC_Os05g39770.2, LOC_Os05g39770.1				GO:0010150 - leaf senescence, GO:0008483 - transaminase activity, GO:0030170 - pyridoxal phosphate binding, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0008152 - metabolic process, GO:0009651 - response to salt stress, GO:0080134 - regulation of response to stress	TO:0000249 - leaf senescence, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	PO:0001054 - 4 leaf senescence stage 
13866	_		_	seed protein B32E			11	AF251071.		Os11g0199700	LOC_Os11g09350.1, LOC_Os11g09329.2, LOC_Os11g09329.1				GO:0006886 - intracellular protein transport, GO:0005622 - intracellular		
13867	_	Osl2	_	aminotransferase, pyruvate-dependent GABA transaminase			4	AF251073. Q7XN11. AF297651. OsGABA-T paralogue.	 Biochemical character,  Vegetative organ - Leaf	Os04g0614600	LOC_Os04g52450.2, LOC_Os04g52450.1				GO:0005739 - mitochondrion, GO:0008152 - metabolic process, GO:0008483 - transaminase activity, GO:0030170 - pyridoxal phosphate binding, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
13868	_	OsL55	_	3-methylcrotonyl CoA carboxylase biotin-containing subunit			12	LOC_Os12g41250. AF251074. Q2QMG2.	 Biochemical character	Os12g0605800	LOC_Os12g41250.1				GO:0004075 - biotin carboxylase activity, GO:0009744 - response to sucrose stimulus, GO:0004485 - methylcrotonoyl-CoA carboxylase activity, GO:0005524 - ATP binding, GO:0005759 - mitochondrial matrix, GO:0006552 - leucine catabolic process, GO:0050897 - cobalt ion binding, GO:0022626 - cytosolic ribosome, GO:0009750 - response to fructose stimulus		
13869	_	OsI57, I57, OsKAT1, KAT1	_	3-ketoacyl-CoA thiolase, 3-ketoacyl-CoA thiolase-like protein			2	LOC_Os02g57260. AF251076. AU056550. 	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0817700	LOC_Os02g57260.1				GO:0005730 - nucleolus, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0005773 - vacuole, GO:0010111 - glyoxysome organization, GO:0005739 - mitochondrion, GO:0005777 - peroxisome, GO:0010150 - leaf senescence, GO:0003988 - acetyl-CoA C-acyltransferase activity, GO:0005829 - cytosol	TO:0000432 - temperature response trait, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
13870	_	OsUXS2, UXS-2	_	dTDP-glucose 4-6-dehydratase-like protein, UDP-xylose synthase 2, UDP-glucuronic acid decarboxylase 2			1	AF251077. AB167396.	 Biochemical character	Os01g0315800	LOC_Os01g21320.1				GO:0042732 - D-xylose metabolic process, GO:0005773 - vacuole, GO:0000139 - Golgi membrane, GO:0048040 - UDP-glucuronate decarboxylase activity, GO:0048316 - seed development, GO:0050662 - coenzyme binding, GO:0010416 - arabinoxylan metabolic process, GO:0005886 - plasma membrane, GO:0044237 - cellular metabolic process	TO:0000653 - seed development trait	
13872	AIM1	MFP, OsAIM, OsCHD, CHD	ABNORMAL INFLORESCENCE MERISTEM1	multifunctional protein, peroxisomal multifunctional protein, ABNORMAL INFLORESCENCE MERISTEM 1, cinnamoyl-CoA hydratase-dehydrogenase		aim1	2	LOC_Os02g17390. AF442962. Q8W1L6. a RNA- and Microtubule-binding Protein. a homolog of Arabidopsis AIM1. GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Vegetative organ - Root	Os02g0274100	LOC_Os02g17390.1				GO:0004165 - dodecenoyl-CoA delta-isomerase activity, GO:0005874 - microtubule, GO:0005777 - peroxisome, GO:0009506 - plasmodesma, GO:0018812 - 3-hydroxyacyl-CoA dehydratase activity, GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity, GO:0008692 - 3-hydroxybutyryl-CoA epimerase activity, GO:0050662 - coenzyme binding, GO:0004300 - enoyl-CoA hydratase activity, GO:0003729 - mRNA binding, GO:0008017 - microtubule binding, GO:0000166 - nucleotide binding, GO:0009697 - salicylic acid biosynthetic process, GO:0048364 - root development, GO:0009507 - chloroplast, GO:0005618 - cell wall, GO:0009845 - seed germination, GO:0009695 - jasmonic acid biosynthetic process, GO:0009908 - flower development, GO:0006635 - fatty acid beta-oxidation	TO:0000227 - root length, TO:0000656 - root development trait, TO:0000605 - hydrogen peroxide content	PO:0001031 - 4 root elongation stage 
13873	_	HLL	_	HUELLENLOS, HUELLENLOS-like protein			12	AF402991.	 Other	Os12g0616200	LOC_Os12g42180.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0015934 - large ribosomal subunit		
13874	MAR1	Osmar1	TC1/MARINER TRANSPOSABLE ELEMENT	Mariner 1, mariner-like element 1, Tc1/Mariner-like element			11	AF172282: 227526-232784.	 Other						GO:0032196 - transposition		
13875	MAR2B	Osmar2b	TC1/MARINER TRANSPOSABLE ELEMENT 2B	Mariner 2b, mariner-like element 2b, Tc1/Mariner-like element 2b			1	AP003294: 104503-109697.	 Other						GO:0032196 - transposition		
13876	MAR3	Osmar3	TC1/MARINER TRANSPOSABLE ELEMENT 3	Mariner 3, mariner-like element 3, Tc1/Mariner-like element 3			4	AL442115: 76624-78029.	 Other						GO:0032196 - transposition		
13877	MAR4	Osmar4	TC1/MARINER TRANSPOSABLE ELEMENT 4	Mariner 4, mariner-like element 4, Tc1/Mariner-like element 4			6	AP003574: 44316-49338.	 Other						GO:0032196 - transposition		
13878	_	Gag-Pol	_	Gag-Pol of the Athila group element			1	AP003054: 36238-53391.									
13879	_		_	retrovirus-like element reverse transcriptase, Athila group reverse transcriptase				AF378016.	 Other						GO:0006278 - RNA-dependent DNA replication, GO:0003723 - RNA binding, GO:0003964 - RNA-directed DNA polymerase activity		
13880	CSLA2	OsCslA2, OsCSLA2	CELLULOSE SYNTHASE LIKE A2		CELLULOSE SYNTHASE LIKE A2		10	BK000092, AF435640, D22177. Q7PC67. LOC_Os10g26630.	 Biochemical character	Os10g0406400	LOC_Os10g26630.1				GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane		
13881	CSLA3	OsCslA3, OsCSLA3	CELLULOSE SYNTHASE LIKE A3		CELLULOSE SYNTHASE LIKE A3		6	BK000081. Q67X45. LOC_Os06g12460.	 Biochemical character	Os06g0230100	LOC_Os06g12460.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane		
13882	CSLA4	OsCslA4, OsCSLA4	CELLULOSE SYNTHASE LIKE A4		CELLULOSE SYNTHASE LIKE A4		3	BK000082. Q8S7W0. LOC_Os03g07350.	 Biochemical character	Os03g0169500	LOC_Os03g07350.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane		
13883	CSLA5	OsCslA5, OsCSLA5	CELLULOSE SYNTHASE LIKE A5		CELLULOSE SYNTHASE LIKE A5		3	BK000083. Q7PC73. LOC_Os03g26044.	 Biochemical character	Os03g0377700	LOC_Os03g26044.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane		
13884	CSLA6	OsCslA6, OsCSLA6	CELLULOSE SYNTHASE LIKE A6		CELLULOSE SYNTHASE LIKE A6		2	AF432498, AF435648, AU166554. Q6Z2T9. LOC_Os02g51060. Os02g0744500 (in Rap1 (build3)).	 Biochemical character	Os02g0744600	LOC_Os02g51060.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane		
13885	CSLA7	OsCslA7, OsCSLA7	CELLULOSE SYNTHASE LIKE A7		CELLULOSE SYNTHASE LIKE A7		7	AF435643, AU093819, BE040507. Q7XIF5. LOC_Os07g43710.	 Biochemical character	Os07g0630900	LOC_Os07g43710.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
13886	CSLA8	OsCslA8	CELLULOSE SYNTHASE LIKE A8		CELLULOSE SYNTHASE LIKE A8				 Biochemical character								
13887	CSLA9	OsCslA9, OsCSLA9	CELLULOSE SYNTHASE LIKE A9		CELLULOSE SYNTHASE LIKE A9		6	AF432499. Q67VS7. LOC_Os06g42020.	 Biochemical character	Os06g0625700	LOC_Os06g42020.1				GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane		
13888	CSLA10	OsCslA10	CELLULOSE SYNTHASE LIKE A10		CELLULOSE SYNTHASE LIKE A10				 Biochemical character								
13889	CSLC2	OsCslC2, OsCSLC2	CELLULOSE SYNTHASE LIKE C2		CELLULOSE SYNTHASE LIKE C2		9	BK000087, AF435650. Q69L19, Q7PC70. LOC_Os09g25900.	 Biochemical character	Os09g0428000	LOC_Os09g25900.1				GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005634 - nucleus, GO:0000139 - Golgi membrane, GO:0005886 - plasma membrane		
13890	CSLC3	OsCslC3, OsCSLC3	CELLULOSE SYNTHASE LIKE C3		CELLULOSE SYNTHASE LIKE C3		8	BK000088. Q7PC69. LOC_Os08g15420.	 Biochemical character	Os08g0253800	LOC_Os08g15420.1				GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0000139 - Golgi membrane		
13891	CSLC4	OsCslC4	CELLULOSE SYNTHASE LIKE C4		CELLULOSE SYNTHASE LIKE C4				 Biochemical character								
13892	CSLC5	OsCslC5	CELLULOSE SYNTHASE LIKE C5		CELLULOSE SYNTHASE LIKE C5				 Biochemical character								
13893	CSLC6	OsCslC6	CELLULOSE SYNTHASE LIKE C6		CELLULOSE SYNTHASE LIKE C6				 Biochemical character								
13894	CSLC7	OsCslC7, OsCSLC7	CELLULOSE SYNTHASE LIKE C7		CELLULOSE SYNTHASE LIKE C7		5	AF435642. Q6L538. LOC_Os05g43530.	 Biochemical character	Os05g0510800	LOC_Os05g43530.1				GO:0000139 - Golgi membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane		
13895	CSLC8	OsCslC8	CELLULOSE SYNTHASE LIKE C8		CELLULOSE SYNTHASE LIKE C8				 Biochemical character								
13896	CSLC9	OsCslC9, OsCSLC9	CELLULOSE SYNTHASE LIKE C9		CELLULOSE SYNTHASE LIKE C9		3	AF435652, AF435653, AF435641, AU068180. Q6AU53. LOC_Os03g56060.	 Biochemical character	Os03g0770800	LOC_Os03g56060.1				GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane		
13897	CSLD2	OsCslD2, OsCSLD2	CELLULOSE SYNTHASE LIKE D2		CELLULOSE SYNTHASE LIKE D2		6	BK000090, AF435649. Q9LHZ7. LOC_Os06g02180.	 Biochemical character	Os06g0111800	LOC_Os06g02180.1				GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0048767 - root hair elongation, GO:0030173 - integral to Golgi membrane, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum		
13898	CSLE2	OsCslE2, OsCSLE2	CELLULOSE SYNTHASE LIKE E2		CELLULOSE SYNTHASE LIKE E2		2	AF432501. Q0DXZ1. LOC_Os02g49332.This is one of the three genes within the candidate gene region on chromosome 2 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Biochemical character	Os02g0725300	LOC_Os02g49332.4, LOC_Os02g49332.3, LOC_Os02g49332.2, LOC_Os02g49332.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0005886 - plasma membrane		
13899	CSLE3	OsCslE3	CELLULOSE SYNTHASE LIKE E3		CELLULOSE SYNTHASE LIKE E3				 Biochemical character								
13900	CSLE4	OsCslE4	CELLULOSE SYNTHASE LIKE E4		CELLULOSE SYNTHASE LIKE E4				 Biochemical character								
13901	CSLE5	OsCslE5	CELLULOSE SYNTHASE LIKE E5		CELLULOSE SYNTHASE LIKE E5				 Biochemical character								
13902	CSLF2	OsCslF2, OsCSLF2	CELLULOSE SYNTHASE LIKE F2		CELLULOSE SYNTHASE LIKE F2		7	AF432503, AF435651, C98682, AU101138. Q84S11. LOC_Os07g36690.	 Biochemical character	Os07g0552800	LOC_Os07g36690.1				GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0030244 - cellulose biosynthetic process		
13903	CSLF3	OsCslF3, OsCSLF3	CELLULOSE SYNTHASE LIKE F3		CELLULOSE SYNTHASE LIKE F3		7	AF432504. Q6ZF85. LOC_Os07g36750. 	 Biochemical character	Os07g0553400	LOC_Os07g36750.1				GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0000139 - Golgi membrane		
13904	CSLF4	OsCslF4, OsCSLF4	CELLULOSE SYNTHASE LIKE F4		CELLULOSE SYNTHASE LIKE F4		7	AF432505. Q6ZF86. LOC_Os07g36740.	 Biochemical character	Os07g0553300	LOC_Os07g36740.1				GO:0000139 - Golgi membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane		
13905	CSLF5	OsCslF5	CELLULOSE SYNTHASE LIKE F5		CELLULOSE SYNTHASE LIKE F5				 Biochemical character								
13906	CSLF6	OsCslF6, OsCSLF6, OsCLD3, CLD3	CELLULOSE SYNTHASE LIKE F6		CELLULOSE SYNTHASE LIKE F6		8	AF435645. Q84UP7. LOC_Os08g06380. OsCLD3 in Shi et al. 2016.	 Biochemical character	Os08g0160500	LOC_Os08g06380.2, LOC_Os08g06380.1				GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process		
13907	CSLF7	OsCslF7, OsCSLF7	CELLULOSE SYNTHASE LIKE F7		CELLULOSE SYNTHASE LIKE F7		10	BK000091. Q94GM9. LOC_Os10g20260.	 Biochemical character	Os10g0343400	LOC_Os10g20260.1				GO:0000139 - Golgi membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane		
13908	CSLH2	OsCslH2, OsCSLH2	CELLULOSE SYNTHASE LIKE H2		CELLULOSE SYNTHASE LIKE H2		4	BK000085. Q7XUT9, Q7PC71. LOC_Os04g35020.	 Biochemical character	Os04g0429500	LOC_Os04g35020.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process		
13909	_	OsTBP2	_	TATA binding protein 2			3	AF464907. Q8W0W4.	 Other	Os03g0657000	LOC_Os03g45410.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006352 - transcription initiation		
13910	_	OsTFIIB	_	transcription factor IIB			9	AF464908. Q8W0W3.	 Other	Os09g0534800	LOC_Os09g36440.1				GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006352 - transcription initiation, GO:0005634 - nucleus		
13911	UBC5B	OsUBC5b, OsUBC15, UBC15	UBIQUITIN CONJUGATING ENZYME 5B	Ubiquitin conjugating enzyme 5b, Ubiquitin-conjugating enzyme 15	UBIQUITIN CONJUGATING ENZYME 5B		2	AB074412. Q8S919. LOC_Os02g16040.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0261100	LOC_Os02g16040.2, LOC_Os02g16040.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
13912	UBC5A	OsUBC5a, OsUBC14, UBC14	UBIQUITIN CONJUGATING ENZYME 5A	Ubiquitin conjugating enzyme 5a, Ubiquitin-conjugating enzyme 14	UBIQUITIN CONJUGATING ENZYME 5A		1	AB074411. Q8S920.	 Biochemical character	Os01g0658400	LOC_Os01g46926.2, LOC_Os01g46926.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding, GO:0009739 - response to gibberellin stimulus, GO:0048316 - seed development	TO:0000166 - gibberellic acid sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
13913	PP2A-B'kappa	OsPP2A-B'kappa, OsB'kappa	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' kappa	protein phosphatase 2A B'kappa subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' kappa		5	AJ312313, AJ272423, BE040415, AU085794, C27982.		Os05g0555100	LOC_Os05g48150.2, LOC_Os05g48150.1				GO:0000159 - protein phosphatase type 2A complex, GO:0008601 - protein phosphatase type 2A regulator activity, GO:0007165 - signal transduction		
13914	PP2A-B'zeta	OsPP2A-B'zeta, OsB'zeta	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' zeta	protein phosphatase 2A B'zeta subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' zeta		3	AJ312314, AU092036, AU092032, D22058, D22057, D22055.		Os03g0844500	LOC_Os03g62730.3, LOC_Os03g62730.2, LOC_Os03g62730.1				GO:0000159 - protein phosphatase type 2A complex, GO:0005777 - peroxisome, GO:0005829 - cytosol, GO:0005730 - nucleolus, GO:0008601 - protein phosphatase type 2A regulator activity, GO:0007165 - signal transduction		
13915	PP2A-B'eta	OsPP2A-B'eta, OsB'eta	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' eta	protein phosphatase 2A B'eta subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' eta		4	CAC09487, AU032466, AU057748, AU057747, AU032467.		Os04g0485100	LOC_Os04g40860.1				GO:0005730 - nucleolus, GO:0000159 - protein phosphatase type 2A complex, GO:0008601 - protein phosphatase type 2A regulator activity, GO:0007165 - signal transduction, GO:0005829 - cytosol, GO:0005777 - peroxisome		
13916	PP2A-B'teta	OsPP2A-B'theta, OsB'theta, PP2A-B'theta, OsPP2A-B'teta, OsB'teta	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' teta	protein phosphatase 2A B'theta subunit, PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' theta, protein phosphatase 2A B'teta subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' teta		8	AJ312315.		Os08g0122000	LOC_Os08g02860.1				GO:0005730 - nucleolus, GO:0007165 - signal transduction, GO:0000159 - protein phosphatase type 2A complex, GO:0008601 - protein phosphatase type 2A regulator activity, GO:0005777 - peroxisome, GO:0005829 - cytosol		
13917	PP2A-B'lambda	OsPP2A-B'lambda, OsB'lambda	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' lambda	protein phosphatase 2A B'lambda subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' lambda			BAB07976 (obsolete).									
13918	_	RRJ1	_				10	a Jasmonic acid (JA)-responsive gene. AB040741, AT003692.	 Biochemical character	Os10g0517500	LOC_Os10g37340.1				GO:0005829 - cytosol, GO:0018826 - methionine gamma-lyase activity, GO:0030170 - pyridoxal phosphate binding, GO:0019458 - methionine catabolic process via 2-oxobutanoate, GO:0006730 - one-carbon metabolic process, GO:0051289 - protein homotetramerization		
13919	_	OsMCP, MCP, OsSO1, SO1	_	Moco containing protein, sulfite oxidase 1			8	AB071966.	 Biochemical character	Os08g0530400	LOC_Os08g41830.1				GO:0006790 - sulfur metabolic process, GO:0042128 - nitrate assimilation, GO:0008482 - sulfite oxidase activity, GO:0043546 - molybdopterin cofactor binding, GO:0020037 - heme binding, GO:0016491 - oxidoreductase activity, GO:0015994 - chlorophyll metabolic process, GO:0010477 - response to sulfur dioxide, GO:0005739 - mitochondrion, GO:0005777 - peroxisome, GO:0009055 - electron carrier activity, GO:0030151 - molybdenum ion binding		
13920	_	Osg1, g1	_	glucanase 1			1	AB070742. beta-1, 3-glucanase	 Biochemical character	Os01g0947700	LOC_Os01g71930.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
13921	_	Gns2	_	beta-1, 3-glucanase 2			1	U72248.	 Biochemical character	Os01g0944900	LOC_Os01g71690.3, LOC_Os01g71690.2				GO:0009409 - response to cold, GO:0009617 - response to bacterium, GO:0048046 - apoplast, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009651 - response to salt stress, GO:0009817 - defense response to fungus, incompatible interaction, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005975 - carbohydrate metabolic process		
13922	_	Gns3	_	beta-1, 3-glucanase 3			1	U72249.	 Biochemical character	Os01g0944800	LOC_Os01g71680.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
13923	_	Gns5, GNS5	_	beta-1, 3-glucanase 5			1	U72251.	 Biochemical character						GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
13924	_	Gns6	_	beta-1, 3-glucanase 6			1	U72252. pathogenesis-related (PR) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0940800	LOC_Os01g71350.1				GO:0005773 - vacuole, GO:0048046 - apoplast, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009651 - response to salt stress, GO:0009617 - response to bacterium, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009409 - response to cold, GO:0005975 - carbohydrate metabolic process, GO:0005886 - plasma membrane, GO:0005618 - cell wall		
13925	_	Gns7, OsGns7	_	beta-1, 3-glucanase 7			1	U72253.	 Biochemical character	Os01g0801500	LOC_Os01g58730.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
13926	_	Gns8	_	beta-1, 3-glucanase 8			5	U72254.	 Biochemical character	Os05g0495900	LOC_Os05g41610.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0005975 - carbohydrate metabolic process, GO:0009617 - response to bacterium, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009817 - defense response to fungus, incompatible interaction		
13927	_	Gns9, GNS9	_	beta-1, 3-glucanase 9			2	U72255.	 Biochemical character	Os02g0771700	LOC_Os02g53200.2, LOC_Os02g53200.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
13928	_	Gns10	_	beta-1, 3-glucanase 10			1	D41315. pathogenesis-related (PR) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0713200	LOC_Os01g51570.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
13929	_	Gns11	_	beta-1, 3-glucanase 11			7	D28296.	 Biochemical character	Os07g0539100	LOC_Os07g35480.3, LOC_Os07g35480.2, LOC_Os07g35480.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
13930	_	Gns12	_	beta-1, 3-glucanase 12			7	D24634.	 Biochemical character	Os07g0539400	LOC_Os07g35520.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
13931	_	Gns13	_	beta-1, 3-glucanase 13			7	D23759.	 Biochemical character	Os07g0539300	LOC_Os07g35510.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
13932	_	Gns14	_	beta-1, 3-glucanase 14				D25236.	 Biochemical character								
13933	_	CRR	_					a centromere-specific retrotransposon. AY101510.	 Other						GO:0032196 - transposition		
13934	_	Osr1, Tos14, Rire15	_	LTR retrotransposon Osr1			10	AC023240: 100410-106807.	 Other						GO:0032196 - transposition		
13935	_	Osr6	_	LTR retrotransposon Osr6			1	AP001366: 57569-62773.	 Other						GO:0032196 - transposition		
13936	_	Osr3	_	LTR retrotransposon Osr3			3	AF458765: 51- 5250.	 Other						GO:0032196 - transposition		
13937	_	Osr4	_	LTR retrotransposon Osr4			6	AB026295: 160208-165872. a copia retrotransposon.	 Other						GO:0032196 - transposition		
13938	_	Osr5	_	LTR retrotransposon Osr5			10	AC021891: 56044-62135.	 Other						GO:0032196 - transposition		
13939	_	Osr7	_	LTR retrotransposon Osr7			1	AP002538 44996-53915.	 Other						GO:0032196 - transposition		
13940	_	Osr8	_	LTR retrotransposon Osr8			10	AC021891: 65191-74406.	 Other						GO:0032196 - transposition		
13941	_	Osr9	_	LTR retrotransposon Osr9			1	AP000969: 25869-28634.	 Other						GO:0032196 - transposition		
13942	_	Osr10	_	LTR retrotransposon Osr10			10	AC069324: 137920 -139740.	 Other						GO:0032196 - transposition		
13943	_	Osr12	_	LTR retrotransposon Osr12			10	AC073166: 104289-109024.	 Other						GO:0032196 - transposition		
13944	_	Osr13, Tos5	_	LTR retrotransposon Osr13			5	AC073405: 72924-79364. a copia retrotransposon.	 Other						GO:0032196 - transposition		
13945	_	Osr15, Tos12	_	LTR retrotransposon Osr15			1	AP002867: 127118-132180.	 Other						GO:0032196 - transposition		
13946	_	Osr16, Tos6	_	LTR retrotransposon Osr16			1	AP002845: 42644-49551.	 Other						GO:0032196 - transposition		
13947	_	Osr17	_	LTR retrotransposon Osr17			10	AC018727: 102539-96583.	 Other						GO:0032196 - transposition		
13948	_	Osr18	_	LTR retrotransposon Osr18			10	AC068654: 23423-25036.	 Other						GO:0032196 - transposition		
13949	_	Osr19	_	LTR retrotransposon Osr19			10	AC069300: 73013-77731.	 Other						GO:0032196 - transposition		
13950	_	Osr20	_	LTR retrotransposon Osr20			3	AC084406: 8749-14200.	 Other						GO:0032196 - transposition		
13951	_	Osr22	_	LTR retrotransposon Osr22			10	AC074283: 24546- 19810.	 Other						GO:0032196 - transposition		
13952	_	Osr24	_	LTR retrotransposon Osr24			3	AC016781: 25997-30858.	 Other						GO:0032196 - transposition		
13953	_	Osr25	_	LTR retrotransposon Osr25			1	AP001278: 28729 35569.	 Other						GO:0032196 - transposition		
13954	_	Osr28	_	LTR retrotransposon Osr28			1	AP002539: 139654-121650.	 Other						GO:0032196 - transposition		
13955	_	Osr29	_	LTR retrotransposon Osr29			1	AP002747: 78609-87615.	 Other						GO:0032196 - transposition		
13956	_	Osr30	_	LTR retrotransposon Osr30			10	AC078891: 52683-65684.	 Other						GO:0032196 - transposition		
13957	_	Osr32	_	LTR retrotransposon Osr32			1	AP002820: 111559-12278.	 Other						GO:0032196 - transposition		
13958	_	Osr34	_	LTR retrotransposon Osr34			5	AF111709: 25889-38685.	 Other						GO:0032196 - transposition		
13959	_	Osr38	_	LTR retrotransposon Osr38			4	AF458766: 31-5535.	 Other						GO:0032196 - transposition		
13960	_	Osr39	_	LTR retrotransposon Osr39			4	AF458767: 51-5267.	 Other						GO:0032196 - transposition		
13961	_	Osr40	_	LTR retrotransposon Osr40			10	AC020666: 65731-77151.	 Other						GO:0032196 - transposition		
13962	_	Osr41	_	LTR retrotransposon Osr41			1	AP003631: 27347-43001.	 Other						GO:0032196 - transposition		
13963	_	Osr42	_	LTR retrotransposon Osr42			4	AF458768: 51-5655.	 Other						GO:0032196 - transposition		
13964	_	Osr43	_	LTR retrotransposon Osr43			1	AP000815: 77117-78910.	 Other						GO:0032196 - transposition		
13965	_	Osr44	_	LTR retrotransposon Osr44			8	AP000364: 41541-42747.	 Other						GO:0032196 - transposition		
13966	_	Osr37	_	LTR retrotransposon Osr37			10	AC068654: 2534-6969.	 Other						GO:0032196 - transposition		
13967	_	OsLPLA	_	lipoyl-protein ligase A			8	EF015469.	 Biochemical character	Os08g0435800	LOC_Os08g33810.1				GO:0016874 - ligase activity, GO:0006464 - protein modification process		
13968	_	OsRALyase1	_	RNA apurinic site specific lyase 1			1	a RelA-SpoT homolog protein. AB073639. LOC_Os01g41250. Os01g0595700 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character		LOC_Os01g41250				GO:0016829 - lyase activity		
13969	_	Oscor413-pm1	_	COR413-plasma membrane group multispanning transmembrane protein 1, cold-regulated 413-plasma membrane group multispanning transmembrane protein 1			3	AF283006.	 Tolerance and resistance - Stress tolerance	Os03g0767800	LOC_Os03g55850.1				GO:0042631 - cellular response to water deprivation, GO:0009750 - response to fructose stimulus, GO:0009744 - response to sucrose stimulus, GO:0009631 - cold acclimation, GO:0009737 - response to abscisic acid stimulus, GO:0005774 - vacuolar membrane, GO:0009749 - response to glucose stimulus, GO:0005886 - plasma membrane		
13970	_	OsBBR, BBR, OsGBP4, GBP4	_	barlet b recombinant protein, rice BBR protein, GA octodinucleotide repeat binding factor BBR, barley B recombinant like protein C, GAGA-binding transcription factor 4			10	AAK52535. AY570520, AY570521. Q7XH85.	 Other	Os10g0115500	LOC_Os10g02620.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
13971	_	OsGBP2, GBP2	_	barley B recombinant like protein A, GAGA-binding transcription factor 2			10	AY569035. P0DH88.	 Other	Os10g0114500	LOC_Os10g02509.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
13972	_	OsGBP3, GBP3	_	barley B recombinant like protein B, GAGA-binding transcription factor 3			10	LOC_Os10g02584. AY569036, AY569037. P0DH89. TO:0000975: grain width.	 Vegetative organ - Culm,  Seed - Morphological traits,  Other	Os10g0115200	LOC_Os10g02584.3, LOC_Os10g02584.2, LOC_Os10g02584.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent	TO:0000734 - grain length, TO:0000207 - plant height	
13973	_	OsGBP1, GBP1	_	barley B recombinant like protein D, GAGA-binding transcription factor 1			6	LOC_Os06g04010. AY957504, AY957505. Q5VSA8. TO:0000975: grain width.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Morphological traits,  Other	Os06g0130600	LOC_Os06g04010.2, LOC_Os06g04010.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0003677 - DNA binding	TO:0002616 - flowering time, TO:0000734 - grain length, TO:0000137 - days to heading, TO:0000207 - plant height	
13974	_	UXS, UXS-3, OsUXS3	_	UDP-D-glucuronic acid decarboxylase, UDP-glucuronic acid decarboxylase 3, UDP-xylose synthase 3			3	BAB84334. AB079064. 	 Biochemical character	Os03g0278000 	LOC_Os03g16980.5, LOC_Os03g16980.4, LOC_Os03g16980.3, LOC_Os03g16980.2, LOC_Os03g16980.1				GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding, GO:0005886 - plasma membrane, GO:0042732 - D-xylose metabolic process, GO:0048040 - UDP-glucuronate decarboxylase activity		
13975	_	UXS-4, OsUXS4	_	UDP-glucuronic acid decarboxylase 4, UDP-xylose synthase 4			1	AB079063. 	 Biochemical character	Os01g0837300 	LOC_Os01g62020.2, LOC_Os01g62020.1				GO:0005794 - Golgi apparatus, GO:0050662 - coenzyme binding, GO:0048040 - UDP-glucuronate decarboxylase activity, GO:0044237 - cellular metabolic process, GO:0042732 - D-xylose metabolic process		
13976	PANGRANGIA	Pangrangia	TRANSPOSON MITE PANGRANGIA	MITE element Pangrangia, Pangrangia-MITE transposon				Pangrangja MITE sequences of Oryza sativa and other wild rice species: AY133195-AY133224, AY242985-AY242994.	 Other						GO:0032196 - transposition		
13977	_	ARC6	_	ARC6-like gene, ARC6 homolog, plastid division protein Arc6			2	BK000999.							GO:0010020 - chloroplast fission, GO:0031357 - integral to chloroplast inner membrane, GO:0006457 - protein folding, GO:0010207 - photosystem II assembly		
13978	_	OsBP-5	_					a MYC protein. AJ487830.	 Other								
13979	_	SMC1	_	structural maintenance of chromosomes protein 1				AJ535209.	 Other						GO:0006396 - RNA processing, GO:0006310 - DNA recombination, GO:0006281 - DNA repair, GO:0016246 - RNA interference, GO:0030261 - chromosome condensation, GO:0009855 - determination of bilateral symmetry, GO:0010413 - glucuronoxylan metabolic process, GO:0009630 - gravitropism, GO:0010014 - meristem initiation, GO:0010073 - meristem maintenance, GO:0006346 - methylation-dependent chromatin silencing, GO:0000278 - mitotic cell cycle, GO:0009887 - organ morphogenesis, GO:0010638 - positive regulation of organelle organization, GO:0033044 - regulation of chromosome organization, GO:0007062 - sister chromatid cohesion, GO:0006810 - transport, GO:0045492 - xylan biosynthetic process, GO:0009507 - chloroplast, GO:0008278 - cohesin complex, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0005215 - transporter activity, GO:0045893 - positive regulation of transcription, DNA-dependent		
13980	_	SMC2	_	structural maintenance of chromosomes protein 2			1	AJ535210.	 Other	Os01g0904400	LOC_Os01g67740.1				GO:0006310 - DNA recombination, GO:0007076 - mitotic chromosome condensation, GO:0000796 - condensin complex, GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0007062 - sister chromatid cohesion, GO:0005524 - ATP binding		
13981	_	SMC3	_	structural maintenance of chromosomes protein 3			2	AJ535211.	 Other	Os02g0133300	LOC_Os02g04040.1				GO:0005524 - ATP binding, GO:0051276 - chromosome organization, GO:0005694 - chromosome		
13982	_	SMC4, OsSMC4	_	structural maintenance of chromosomes protein 4			5	AJ488495. LOC_Os05g41750. Os05g0497100 (in Rap3 (build5)).	 Other	Os05g0497150	LOC_Os05g41750.1				GO:0007131 - reciprocal meiotic recombination, GO:0005215 - transporter activity, GO:0006306 - DNA methylation, GO:0006281 - DNA repair, GO:0000911 - cytokinesis by cell plate formation, GO:0006270 - DNA replication initiation, GO:0051607 - defense response to virus, GO:0005524 - ATP binding, GO:0048449 - floral organ formation, GO:0051567 - histone H3-K9 methylation, GO:0010267 - production of ta-siRNAs involved in RNA interference, GO:0005694 - chromosome, GO:0006275 - regulation of DNA replication, GO:0010389 - regulation of G2/M transition of mitotic cell cycle, GO:0030261 - chromosome condensation, GO:0009909 - regulation of flower development, GO:0007062 - sister chromatid cohesion, GO:0007129 - synapsis, GO:0006810 - transport, GO:0005634 - nucleus, GO:0006346 - methylation-dependent chromatin silencing, GO:0007067 - mitosis, GO:0008283 - cell proliferation, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0031048 - chromatin silencing by small RNA		
13983	_	SMC5	_	structural maintenance of chromosomes protein 5			5	AJ535212.	 Other	Os05g0596600	LOC_Os05g51790.2, LOC_Os05g51790.1				GO:0010267 - production of ta-siRNAs involved in RNA interference, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0030915 - Smc5-Smc6 complex, GO:0009506 - plasmodesma, GO:0051607 - defense response to virus, GO:0005524 - ATP binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0007062 - sister chromatid cohesion		
13984	_	SMC6	_	structural maintenance of chromosomes protein 6			9	AJ535213.	 Other	Os09g0121000	LOC_Os09g03370.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0030915 - Smc5-Smc6 complex		
13985	_	OsALD1, ALD1	_	AGD2-LIKE DEFENSE RESPONSE PROTEIN1, ABERRANT GROWTH AND DEATH2 [AGD2]-LIKE DEFENSE1, AGD2-LIKE DEFENSE 1			3	AY338236. Q6VMN7.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0195100	LOC_Os03g09910.1				GO:0050832 - defense response to fungus, GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0009693 - ethylene biosynthetic process, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0010150 - leaf senescence, GO:0010285 - L,L-diaminopimelate aminotransferase activity, GO:0030170 - pyridoxal phosphate binding, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease	
13986	_	OsAGD2	_	aberrant growth and death2			3	AY338235. Q10MQ2.	 Biochemical character	Os03g0299900	LOC_Os03g18810.1				GO:0009570 - chloroplast stroma, GO:0030170 - pyridoxal phosphate binding, GO:0005507 - copper ion binding, GO:0010285 - L,L-diaminopimelate aminotransferase activity, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0009693 - ethylene biosynthetic process, GO:0009089 - lysine biosynthetic process via diaminopimelate		
13987	_	PINO1, INO1	_	Porteresia coarctata INO1 gene				AF412340. the INO1 gene from Porteresia coarctata (Oryza coarctata (Wild rice)) (Roxb.) Tateoka. a novel salt-tolerant MIPS.	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0006021 - inositol biosynthetic process, GO:0008654 - phospholipid biosynthetic process, GO:0004512 - inositol-3-phosphate synthase activity		
13988	_	Ose705	_				11	AF049348. CXCXC repeat zinc finger protein.	 Seed							TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
13991	PSBK	psbK	PHOTOSYSTEM II SUBUNIT K	photosystem II protein K, PSII K protein	PHOTOSYSTEM II SUBUNIT K		Pt	P0C409, P0C410. LOC_Osp1g00140. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46106: Nip011 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA34010 (Japonica Group chloroplast genome). GU592207: ADD62819 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00140				GO:0009539 - photosystem II reaction center, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0015979 - photosynthesis		
13992	PSBI	psbI	PHOTOSYSTEM II SUBUNIT I	photosystem II protein I, PSII I protein	PHOTOSYSTEM II SUBUNIT I		Pt	LOC_Osp1g00150. P0C406, P0C407. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46107: Nip012  (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34011 (Japonica Group chloroplast genome). GU592207:ADD62820  (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00150				GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0015979 - photosynthesis, GO:0009539 - photosystem II reaction center, GO:0016021 - integral to membrane		
13993	PSBD	psbD, D2, OsPsbD1, OsPsbD2	PHOTOSYSTEM II SUBUNIT D2	photosystem II protein D2, PSII D2 protein, reaction center protein D2	PHOTOSYSTEM II SUBUNIT D2		Pt	P0C436, P0C437. LOC_Osp1g00170. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46108: Nip018 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34013 (Japonica Group chloroplast genome). S46932. GU592207:ADD62821 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). OsPsbD1 in Teng et al. 2014.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osp1g00170				GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0009536 - plastid, GO:0005506 - iron ion binding, GO:0009523 - photosystem II, GO:0009535 - chloroplast thylakoid membrane, GO:0016491 - oxidoreductase activity, GO:0010287 - plastoglobule, GO:0016021 - integral to membrane	TO:0000437 - male sterility	
13994	PSBC	psbC, cp43	_	photosystem II 44 kDa protein, PSII 43kDa protein, photosystem II CP43 chlorophyll apoprotein			Pt	P0C366, P0C367. LOC_Osp1g00180. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46109: Nip019 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34014 (Japonica Group chloroplast genome). chlorophyll-binding antenna protein of photosystem II. GU592207:ADD62822 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00180				GO:0030076 - light-harvesting complex, GO:0018298 - protein-chromophore linkage, GO:0016168 - chlorophyll binding, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0010206 - photosystem II repair, GO:0009737 - response to abscisic acid stimulus, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0009523 - photosystem II, GO:0009536 - plastid, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	TO:0000615 - abscisic acid sensitivity	
13995	PSBM	psbM	_	photosystem II M protein, PSII low MW protein, photosystem II protein M			Pt	LOC_Osp1g00220. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46110: Nip029 (cultivar Nipponbare), AY522331 (isolate PA64S). P0C413. X15901:CAA33984 (Japonica Group chloroplast genome). GU592207:ADD62823 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00220				GO:0009536 - plastid, GO:0009523 - photosystem II		
13996	RPOB	rpoB, RpoB, Rpobeta	RNA POLYMERASE SUBUNIT B	RNA polymerase beta chain, RNA polymerase beta subunit, Beta subunit of rice chloroplast RNA polymerase	RNA POLYMERASE SUBUNIT B		Pt	P0C502, P0C503. LOC_Osp1g00240. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46111: Nip036 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33986 (Japonica Group chloroplast genome). FJ908467-FJ908481 (wild rice species, trnC-rpoB intergenic spacer). GU592207:ADD62824 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00240				GO:0003677 - DNA binding, GO:0032549 - ribonucleoside binding, GO:0006351 - transcription, DNA-dependent, GO:0003899 - DNA-directed RNA polymerase activity, GO:0009658 - chloroplast organization, GO:0009295 - nucleoid, GO:0009507 - chloroplast, GO:0009536 - plastid	TO:0002715 - chloroplast development trait	
13997	RPS2	rps2	RIBOSOMAL PROTEIN S2	ribosomal protein S2	RIBOSOMAL PROTEIN S2		Pt	P0C481, P0C482. LOC_Osp1g00270. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46114: Nip040 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33989 (Japonica Group chloroplast genome). GU592207:ADD62827 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00270				GO:0009536 - plastid, GO:0009570 - chloroplast stroma, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0015935 - small ribosomal subunit, GO:0016020 - membrane		
13998	_	atpI	_	ATP synthase CF0 A chain, ATPase a subunit, ATP synthase CF0 subunit IV			Pt	P0C2Y6, P0C2Y7. LOC_Osp1g00280. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46115: Nip041 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33990 (Japonica Group chloroplast genome). FJ908195-FJ908209 (wild rice species). GU592207:ADD62828 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00280				GO:0005886 - plasma membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0042777 - plasma membrane ATP synthesis coupled proton transport, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o)		
13999	_	atpH	_	ATP synthase CF0 C chain, ATPase III subunit, ATP synthase CF0 subunit III			Pt	LOC_Osp1g00290. P0C300, P0C301. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46116: Nip042 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33991 (Japonica Group chloroplast genome). GU592207:ADD62829 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00290				GO:0016021 - integral to membrane, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0008289 - lipid binding, GO:0015986 - ATP synthesis coupled proton transport, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane		
14000	_	atpA	_	ATP synthase CF1 alpha chain, ATPase alpha subunit, ATP synthase CF1 alpha subunit			Pt	P0C2Z5, P0C2Z6. LOC_Osp1g00310. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46118: Nip046 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33993 (Japonica Group chloroplast genome). GU592207:ADD62831 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00310				GO:0015986 - ATP synthesis coupled proton transport, GO:0005524 - ATP binding, GO:0008270 - zinc ion binding, GO:0009409 - response to cold, GO:0009535 - chloroplast thylakoid membrane, GO:0010319 - stromule, GO:0010287 - plastoglobule, GO:0009536 - plastid, GO:0042777 - plasma membrane ATP synthesis coupled proton transport, GO:0042742 - defense response to bacterium, GO:0031977 - thylakoid lumen, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1)		
14003	RPS4	rps4	RIBOSOMAL PROTEIN S4	chloroplast ribosomal protein S4, ribosomal protein S4	RIBOSOMAL PROTEIN S4		Pt	LOC_Osp1g00360. P0C487, P0C488. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46122: Nip054 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33998 (Japonica Group chloroplast genome). GU592207:ADD62835 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00360				GO:0009536 - plastid, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0019843 - rRNA binding, GO:0016020 - membrane, GO:0015935 - small ribosomal subunit, GO:0009570 - chloroplast stroma		
14004	NDHJ	ORF159, ndhJ	NADH DEHYDROGENASE SUBUNIT J	NADH dehydrogenase subunit J, NADH-plastoquinone oxidoreductase subunit J	NADH DEHYDROGENASE SUBUNIT J		Pt	P0C339, P0C340. LOC_Osp1g00370. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46123: Nip057 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33999 (Japonica Group chloroplast genome). GU592207:ADD62836 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00370				GO:0019684 - photosynthesis, light reaction, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0009535 - chloroplast thylakoid membrane, GO:0006810 - transport, GO:0009536 - plastid, GO:0009970 - cellular response to sulfate starvation, GO:0048038 - quinone binding		
14005	NDHK	psbG, ndhK	NADH DEHYDROGENASE SUBUNIT K	NADH dehydrogenase subunit K, PSII G protein, NADH-plastoquinone oxidoreductase subunit K	NADH DEHYDROGENASE SUBUNIT K		Pt	LOC_Osp1g00380. P0C342, P0C343. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46124: Nip058 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA3400 (Japonica Group chloroplast genome). GU592207:ADD62837 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00380				GO:0019684 - photosynthesis, light reaction, GO:0009536 - plastid, GO:0006810 - transport, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005506 - iron ion binding, GO:0048038 - quinone binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009535 - chloroplast thylakoid membrane		
14006	NDHC	ndhC	NADH DEHYDROGENASE SUBUNIT 3	NADH dehydrogenase subunit 3, NADH dehydrogenase ND3, NADH-plastoquinone oxidoreductase subunit 3	NADH DEHYDROGENASE SUBUNIT 3		Pt	LOC_Osp1g00390. P0C321, P0C322. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46125: Nip059 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34001 (Japonica Group chloroplast genome). FJ908303-FJ908317 (wild rice species). AB436227-AB436285 (wild rice species, ndhC-tRNA Val intergenic region). GU592207:ADD62838 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00390				GO:0048038 - quinone binding, GO:0006810 - transport, GO:0019684 - photosynthesis, light reaction, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
14008	_	ORF106, accD	_	acetyl-CoA carboxylase beta subunit, acetyl-CoA carboxylase carboxyltransferase beta subunit			Pt	LOC_Osp1g00440. P0C2Y3, P0C2Y4. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46128: Nip067 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33956 (Japonica Group chloroplast genome). GU592207:ADD62841 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome).	 Biochemical character		LOC_Osp1g00440				GO:0006633 - fatty acid biosynthetic process, GO:0009536 - plastid, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding, GO:0016874 - ligase activity		
14009	YCF4	Ycf4, ORF185	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4	photosystem I assembly protein Ycf4	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4		Pt	P0C514, P0C515. LOC_Osp1g00460. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46129: Nip069 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33958 (Japonica Group chloroplast genome). GU592207:ADD62842 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00460				GO:0015979 - photosynthesis, GO:0009536 - plastid, GO:0009522 - photosystem I, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane		
14010	PETA	petA, Cytf, cytF, Cyt f	_	cytochrome f	_		Pt	P0C388, P0C389. LOC_Osp1g00480. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46130: Nip074 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33961 (Japonica Group chloroplast genome). GU592207:ADD62844 (Japonica chloroplast comlete genome). M15955. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osp1g00480				GO:0009055 - electron carrier activity, GO:0055114 - oxidation reduction, GO:0031361 - integral to thylakoid membrane, GO:0020037 - heme binding, GO:0012501 - programmed cell death, GO:0005506 - iron ion binding, GO:0015979 - photosynthesis, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane	TO:0000437 - male sterility	
14011	PSBF	psbF	_	cytochrome b559 beta chain, PSII cytochrome b559, photosystem II cytochrome b559 beta subunit			Pt	P0C400, P0C401. LOC_Osp1g00510. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46131: Nip078 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33964 (Japonica Group chloroplast genome). GU592207:ADD62846 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00510				GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0009767 - photosynthetic electron transport chain, GO:0009539 - photosystem II reaction center, GO:0005506 - iron ion binding, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane		
14012	PSBE	psbE	_	cytochrome b559 alpha chain, PSII cytochrome b559, photosystem II cytochrome b559 alpha subunit			Pt	P0C369, P0C370. LOC_Osp1g00520. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46132: Nip079 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33965 (Japonica Group chloroplast genome). GU592207:ADD62847 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00520				GO:0009055 - electron carrier activity, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0009539 - photosystem II reaction center, GO:0009767 - photosynthetic electron transport chain, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
14013	PETE	petE, petG	_	cytochrome b6/f complex subunit V, cytochrome b/f complex subunit 5	_		Pt	LOC_Osp1g00540. P0C391, P0C392. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46133: Nip082 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33967 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). petG in Masood et al. 2004 (Oryza nivara) and Zhang et al. 2012 (Indica).	 Biochemical character		LOC_Osp1g00540				GO:0016021 - integral to membrane, GO:0055114 - oxidation reduction, GO:0017004 - cytochrome complex assembly, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0015979 - photosynthesis, GO:0009512 - cytochrome b6f complex		
14014	RPL33	rpl33	RIBOSOMAL PROTEIN L33	ribosomal protein L33	RIBOSOMAL PROTEIN L33		Pt	LOC_Osp1g00560. P0C456, P0C457. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46134: Nip086 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA3396 (Japonica Group chloroplast genome). FJ908542-FJ908556 (wild rice species). GU592207:ADD62848 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00560				GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009536 - plastid, GO:0005840 - ribosome		
14015	RPS18	rps18	RIBOSOMAL PROTEIN S18	ribosomal protein S18	RIBOSOMAL PROTEIN S18		Pt	P0C476, P0C477. LOC_Osp1g00570. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46135: Nip088 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33970 (Japonica Group chloroplast genome). GU592207:ADD62849 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00570				GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0009536 - plastid, GO:0006412 - translation, GO:0005840 - ribosome, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome		
14016	CLPP	ORF216, ClpP, clpP	CHLOROPLAST PROTEASE 	ATP-dependent Clp protease proteolytic subunit, plastidic caseinolytic protease, chloroplast Clp, clp protease proteolytic subunit	CHLOROPLAST PROTEASE 		Pt	P0C313, P0C314. LOC_Osp1g00590. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46136: Nip089 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33972 (Japonica Group chloroplast genome). FJ908162-FJ908176 (wild rice species). GU592207:ADD62850 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). 	 Biochemical character		LOC_Osp1g00590				GO:0006508 - proteolysis, GO:0009536 - plastid, GO:0005524 - ATP binding, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0004252 - serine-type endopeptidase activity, GO:0009535 - chloroplast thylakoid membrane		
14017	_	psbB	_	photosystem II 47 kDa protein, PSII 47kDa protein, photosystem II CP47 chlorophyll apoprotein			Pt	P0C363, P0C364. LOC_Osp1g00600. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46137: Nip090 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33973 (Japonica Group chloroplast genome). GU592207:ADD62851 (Japonica chloroplast comlete genome). D29700. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GQ848589.	 Biochemical character		LOC_Osp1g00600				GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0016168 - chlorophyll binding, GO:0018298 - protein-chromophore linkage, GO:0010206 - photosystem II repair, GO:0009523 - photosystem II, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0009767 - photosynthetic electron transport chain	TO:0000615 - abscisic acid sensitivity	
14018	PSBN	psbN	PHOTOSYSTEM II PROTEIN N	photosystem II protein N	PHOTOSYSTEM II PROTEIN N		Pt	AY522329:AAS46072 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46138: Nip092 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207: ADD62852 (Japonica chloroplast comlete genome).							GO:0009507 - chloroplast		
14019	PSBH	psbH, psbF	PHOTOSYSTEM II PHOSPHOPROTEIN	photosystem II phosphoprotein, PSII 10kDa phosphoprotein, Photosystem II 10 kDa phosphoprotein	PHOTOSYSTEM II PHOSPHOPROTEIN		Pt	P0C421, P0C422. LOC_Osp1g00620. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46139: Nip093 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33976 (Japonica Group chloroplast genome). GU592207:ADD62853 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). X12695. psbF in Cote and Wu 1988.	 Biochemical character		LOC_Osp1g00620				GO:0016021 - integral to membrane, GO:0050821 - protein stabilization, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0015979 - photosynthesis, GO:0042301 - phosphate binding, GO:0009523 - photosystem II		
14020	PETD	petD	_	cytochrome b6/f complex subunit IV, cytochrome b/f			Pt	P0C318, P0C319. LOC_Osp1g00650. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46140: Nip099 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33978 (Japonica Group chloroplast genome). GU592207:ADD62854 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00650				GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0022904 - respiratory electron transport chain, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0009767 - photosynthetic electron transport chain, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane		
14021	RPOA	rope, rpoalpha, Rpoalpha, rope, RpoA	RNA POLYMERASE SUBUNIT A	RNA polymerase alpha chain, RNA polymerase alpha subunit	RNA POLYMERASE SUBUNIT A		Pt	P0C499, P0C500. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46141: Nip100 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33979 (Japonica Group chloroplast genome). GU592207:ADD62855 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00660				GO:0009536 - plastid, GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity, GO:0006351 - transcription, DNA-dependent, GO:0009295 - nucleoid, GO:0009507 - chloroplast		
14022	RPS11	rps11	RIBOSOMAL PROTEIN S11	ribosomal protein S11	RIBOSOMAL PROTEIN S11		Pt	P0C463, P0C464. LOC_Osp1g00670. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46142: Nip102 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33980 (Japonica Group chloroplast genome). GU592207:ADD62856 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00670				GO:0005840 - ribosome, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
14023	RPL36	rpl36	RIBOSOMAL PROTEIN L36	ribosomal protein L36	RIBOSOMAL PROTEIN L36		Pt	AY522329: AAS46077 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46143: Nip104 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207:ADD62857 (Japonica chloroplast comlete genome).	 Other						GO:0005840 - ribosome, GO:0009536 - plastid		
14024	INFA	infA	_	translation initiation factor 1, initiation factor 1, translational initiation factor 1			Pt	P0C379, P0C380. LOC_Osp1g00690. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46144: Nip105 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33930 (Japonica Group chloroplast genome). GU592207:ADD62858 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00690				GO:0003743 - translation initiation factor activity, GO:0009507 - chloroplast, GO:0009536 - plastid		
14025	RPS8	rps8	RIBOSOMAL PROTEIN S8	ribosomal protein S8, chloroplastic 30S ribosomal protein S8	RIBOSOMAL PROTEIN S8		Pt	LOC_Osp1g00700. P0C493, P0C494. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46145 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33931 (Japonica Group chloroplast genome). GU592207:ADD62859 (Japonica chloroplast comlete genome). AU070441, AU174085. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Tolerance and resistance - Stress tolerance,  Other		LOC_Osp1g00700				GO:0005840 - ribosome, GO:0009536 - plastid, GO:0016020 - membrane, GO:0006412 - translation, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast	TO:0000432 - temperature response trait	
14026	RPL14	rpl14	RIBOSOMAL PROTEIN L14	ribosomal protein L14	RIBOSOMAL PROTEIN L14		Pt	P0C439, P0C440. LOC_Osp1g00710. AY522329: AAS46080 (isolate 93-11 chloroplast comlete genome). X15901: CAA33932 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00710				GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0015934 - large ribosomal subunit, GO:0006412 - translation		
14027	RPL16	rpl16	RIBOSOMAL PROTEIN L16	ribosomal protein L16	RIBOSOMAL PROTEIN L16		Pt	P0C442, P0C443. LOC_Osp1g00720. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46146: Nip111 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33933 (Japonica Group chloroplast genome). GU592207:ADD62860 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00720				GO:0019843 - rRNA binding, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast, GO:0009536 - plastid		
14028	RPS3	rps3	RIBOSOMAL PROTEIN S3	ribosomal protein S3	RIBOSOMAL PROTEIN S3		Pt	LOC_Osp1g00730. P0C484, P0C485. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46147: Nip115 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33934 (Japonica Group chloroplast genome). FJ908434-FJ908448 (wild rice species). GU592207:ADD62861 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00730				GO:0009295 - nucleoid, GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit, GO:0019843 - rRNA binding, GO:0009536 - plastid, GO:0006412 - translation, GO:0016020 - membrane		
14029	RPL22	rpl22	RIBOSOMAL PROTEIN L22	ribosomal protein L22	RIBOSOMAL PROTEIN L22		Pt	LOC_Osp1g00740. P0C445, P0C446. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46148: Nip117 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33935 (Japonica Group chloroplast genome). GU592207:ADD62862 (Japonica chloroplast comlete genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00740				GO:0006412 - translation, GO:0009536 - plastid, GO:0015934 - large ribosomal subunit, GO:0009507 - chloroplast, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome		
14030	RPL2	rpl2	RIBOSOMAL PROTEIN L2	ribosomal protein L2	RIBOSOMAL PROTEIN L2		Pt	LOC_Osp1g00770. P0C496, P0C497. AAS46084. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46149: Nip222 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33924 (Japonica Group chloroplast genome). GU592207: ADD62864 (Japonica chloroplast comlete genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00770				GO:0015934 - large ribosomal subunit, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0009451 - RNA modification, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0016740 - transferase activity, GO:0016020 - membrane		
14031	RPL23	rpl23	RIBOSOMAL PROTEIN L23	ribosomal protein L23	RIBOSOMAL PROTEIN L23		Pt	LOC_Osp1g00780. P0C450, P0C451. AY522329: AAS46085 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46150 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33938 (Japonica Group chloroplast genome). GU592207: ADD62865 (Japonica chloroplast comlete genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00780				GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0000166 - nucleotide binding, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0006412 - translation, GO:0005840 - ribosome		
14032	RPS7	rps7	RIBOSOMAL PROTEIN S7	ribosomal protein S7	RIBOSOMAL PROTEIN S7		Pt	LOC_Osp1g00820. P0C490, P0C491. AY522329: AAS46086 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46151: Nip129 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33942 (Japonica Group chloroplast genome). GU592207: ADD62866 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). BA000029 (Nipponbare complete mitochondrial genome): BAC19857.	 Other		LOC_Osp1g00820				GO:0016020 - membrane, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit, GO:0009579 - thylakoid, GO:0009536 - plastid, GO:0019843 - rRNA binding, GO:0009507 - chloroplast		
14033	RPS15	rps15	RIBOSOMAL PROTEIN S15	ribosomal protein S15	RIBOSOMAL PROTEIN S15		Pt	P0C469, P0C470. LOC_Osp1g00870. AY522329: AAS46087 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46152: Nip162 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33948 (Japonica Group chloroplast genome). GU592207: ADD62867 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00870				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation, GO:0009536 - plastid, GO:0009570 - chloroplast stroma		
14034	_	ORF56, ndhH	NADH DEHYDROGENASE SUBUNIT 7	NADH dehydrogenase subunit 7, NADH-plastoquinone oxidoreductase subunit 7	NADH DEHYDROGENASE SUBUNIT 7		Pt	P0C336, P0C337. LOC_Osp1g00970. AY522329: AAS46088 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46153: Nip164 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33949 (Japonica Group chloroplast genome). GU592207:ADD62868 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00970				GO:0009536 - plastid, GO:0019684 - photosynthesis, light reaction, GO:0006810 - transport, GO:0051287 - NAD or NADH binding, GO:0048038 - quinone binding, GO:0009535 - chloroplast thylakoid membrane, GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor		
14035	NDHF	ndhF	NADH DEHYDROGENASE SUBUNIT 5	NADH dehydrogenase subunit 5, NADH dehydrogenase ND5, NADH dehydrogenase subunit F, NADH-plastoquinone oxidoreductase subunit 5, NADH-plastoquinone oxidoreductase subunit F	NADH DEHYDROGENASE SUBUNIT 5		Pt	P0C327, P0C328. LOC_Osp1g00880. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46154: Nip165 (cultivar Nipponbare), AY522331 (isolate PA64S). HE573524 (Oryza meridionalis), HE577878 (Oryza coarctata). X15901:CAA33950 (Japonica Group chloroplast genome). FJ908335-FJ908349 (wild rice species). GU592207:ADD62869 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00880				GO:0009536 - plastid, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0006810 - transport, GO:0048038 - quinone binding, GO:0042773 - ATP synthesis coupled electron transport, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane		
14036	RPL32	rpl32, ORF63	RIBOSOMAL PROTEIN L32	ribosomal protein L32	RIBOSOMAL PROTEIN L32		Pt	P0C453, P0C454. LOC_Osp1g00890. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46155: Nip166 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33951 (Japonica Group chloroplast genome). GU592207:ADD62870 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00890				GO:0015934 - large ribosomal subunit, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009536 - plastid		
14037	_	ORF321, ccsA	_	cytochrome c biogenesis protein, cytochrome c heme attachment protein, heme attachment protein			Pt	P0C376, P0C377. LOC_Osp1g00900. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46156: Nip168 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33952 (Japonica Group chloroplast genome). GU592207:ADD62871 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00900				GO:0008535 - respiratory chain complex IV assembly, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0017004 - cytochrome complex assembly		
14038	NDHD	ndhD, NdhD, NDH4, NADH4	NADH DEHYDROGENASE SUBUNIT 4	NADH dehydrogenase subunit 4, NADH dehydrogenase ND4, NADH-plastoquinone oxidoreductase subunit 4, NADH-ubiquinone oxidoreductase chain	NADH DEHYDROGENASE SUBUNIT 4		Pt	LOC_Osp1g00910. P0C324, P0C325. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46157: Nip169 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33953 (Japonica Group chloroplast genome). GU592207:ADD62872 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00910				GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0048038 - quinone binding, GO:0042773 - ATP synthesis coupled electron transport		
14039	PSAC	psaC	PHOTOSYSTEM I SUBUNIT VII	photosystem I subunit VII, PSI 9kDa protein	PHOTOSYSTEM I SUBUNIT VII		Pt	LOC_Osp1g00920. P0C360, P0C361. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46158: Nip170 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33954 (Japonica Group chloroplast genome). GU592207:ADD62873 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00920				GO:0009535 - chloroplast thylakoid membrane, GO:0009522 - photosystem I, GO:0046872 - metal ion binding, GO:0009536 - plastid, GO:0009055 - electron carrier activity, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0016491 - oxidoreductase activity		
14040	NDHE	ndhE	NADH DEHYDROGENASE SUBUNIT 4L	NADH dehydrogenase subunit 4L, NADH dehydrogenase ND4L, NADH-plastoquinone oxidoreductase subunit 4L	NADH DEHYDROGENASE SUBUNIT 4L		Pt	LOC_Osp1g00930. P0C333, P0C334. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46159: Nip171 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33955 (Japonica Group chloroplast genome). GU592207:ADD62874 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00930				GO:0042773 - ATP synthesis coupled electron transport, GO:0006810 - transport, GO:0009535 - chloroplast thylakoid membrane, GO:0048038 - quinone binding, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, GO:0019684 - photosynthesis, light reaction		
14041	NDHG	ndhG	NADH DEHYDROGENASE SUBUNIT 6	NADH dehydrogenase subunit 6, NADH dehydrogenase ND6, NADH-plastoquinone oxidoreductase subunit 6	NADH DEHYDROGENASE SUBUNIT 6		Pt	LOC_Osp1g00940. P0C330, P0C331. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46160: Nip172 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33908 (Japonica Group chloroplast genome). GU592207:ADD62875 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00940				GO:0006810 - transport, GO:0048038 - quinone binding, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0009535 - chloroplast thylakoid membrane		
14043	NDHH	ORF393, ndhH	NADH DEHYDROGENASE SUBUNIT 7	NADH dehydrogenase subunit 7, NADH dehydrogenase 49kDa protein, NADH-plastoquinone oxidoreductase subunit 7	NADH DEHYDROGENASE SUBUNIT 7		Pt	P0C336, P0C337. LOC_Osp1g00970. AY522329: AAS46097 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46162: Nip176 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33911 (Japonica Group chloroplast genome). GU592207:ADD62878 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00970				GO:0048038 - quinone binding, GO:0019684 - photosynthesis, light reaction, GO:0006810 - transport, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0051287 - NAD or NADH binding, GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor		
14044	RPS15	rps15	RIBOSOMAL PROTEIN S15	ribosomal protein S15	RIBOSOMAL PROTEIN S15		Pt	LOC_Osp1g00980. P0C469, P0C470. AY522329: AAS46098 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46163: Nip178  (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33912 (Japonica Group chloroplast genome). GU592207:ADD62879 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00980				GO:0009536 - plastid, GO:0009570 - chloroplast stroma, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
14045	RPS7	rps7	RIBOSOMAL PROTEIN S7	ribosomal protein S7	RIBOSOMAL PROTEIN S7		Pt	LOC_Osp1g01050. P0C490, P0C491.AY522329: AAS46099 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46164: Nip206 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33919 (Japonica Group chloroplast genome). GU592207:ADD62880 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g01050				GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0016020 - membrane, GO:0009536 - plastid, GO:0009579 - thylakoid, GO:0015935 - small ribosomal subunit, GO:0006412 - translation, GO:0009507 - chloroplast		
14046	RPL23	rpl23	RIBOSOMAL PROTEIN L23	ribosomal protein L23	RIBOSOMAL PROTEIN L23		Pt	LOC_Osp1g01090. P0C450, P0C451. AY522329: AAS46100 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46165: Nip215b (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33923 (Japonica Group chloroplast genome). GU592207:ADD62882 (Japonica chloroplast comlete genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g01090				GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0005840 - ribosome, GO:0000166 - nucleotide binding		
14047	RPL2	rpl2	RIBOSOMAL PROTEIN L2	ribosomal protein L2	RIBOSOMAL PROTEIN L2		Pt	P0C496, P0C497. LOC_Osp1g01100. AY522329: AAS46101 (isolate 93-11 chloroplast comlete genome). X15901: CAA33928 (Japonica Group chloroplast genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g01100				GO:0019843 - rRNA binding, GO:0016020 - membrane, GO:0015934 - large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0009451 - RNA modification, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0006412 - translation, GO:0016740 - transferase activity		
14048	_	OsMyoVIIIA, OsMyoVIIIA-1, OsMyoVIIIA-2	_	Myosin VIIIA, Myosin class VIII A			7	AY374513, AY374514. 		Os07g0562800	LOC_Os07g37560.3, LOC_Os07g37560.2, LOC_Os07g37560.1				GO:0005524 - ATP binding, GO:0016459 - myosin complex, GO:0003774 - motor activity		
14049	_	OsMyoXIE, OsMyoXIE-1, OsMyoXIE-2, OsMyoXIE-3	_	Myosin XIE, Myosin class XI E			3	AY374515, AY374516, AY374517. 		Os03g0747900	LOC_Os03g53660.1				GO:0009624 - response to nematode, GO:0005524 - ATP binding, GO:0003774 - motor activity, GO:0051645 - Golgi localization, GO:0030048 - actin filament-based movement, GO:0044036 - cell wall macromolecule metabolic process, GO:0060151 - peroxisome localization, GO:0051646 - mitochondrion localization, GO:0016461 - unconventional myosin complex, GO:0010089 - xylem development		
14050	_		_	U11 small nuclear RNA, U11 snRNA			2	BK005208.									
14052	_	CRTintP	_	CRT interacting protein, calreticulin interacting protein	_		7	a ubiquitin-like nuclear protein. AB078881.		Os07g0498800	LOC_Os07g31540.1						
14053	_	SAMDC1, SAMDC, OsSAMDC4	_	S-adenosylmethionine decarboxylase 1			9	LOC_Os09g25625. AB122089. AU062686, AU166559, C28220, C97560. OsSAMDC4 in Chen et al. 2014 and Saha and Giri 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0424300	LOC_Os09g25625.1, LOC_Os09g25620.4, LOC_Os09g25620.3, LOC_Os09g25620.2, LOC_Os09g25620.1				GO:0006557 - S-adenosylmethioninamine biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0006597 - spermine biosynthetic process, GO:0006596 - polyamine biosynthetic process, GO:0009651 - response to salt stress	TO:0000432 - temperature response trait, TO:0006001 - salt tolerance	
14054	_	RAMY	_				1	A zinc-finger protein. AY072712.	 Other						GO:0006950 - response to stress		
14055	_	CDSP32	_	Thioredoxin CDSP32, Trx CDSP32			7	AM039890. Q84NN4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0476900	LOC_Os07g29410.2, LOC_Os07g29410.1				GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0006662 - glycerol ether metabolic process, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0009570 - chloroplast stroma, GO:0009941 - chloroplast envelope, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity		
14056	_	Trx x	_	Thioredoxin x			4	AM183298. Q7XKD0.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0676100	LOC_Os04g57930.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009651 - response to salt stress, GO:0009570 - chloroplast stroma, GO:0009055 - electron carrier activity, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0008047 - enzyme activator activity, GO:0006833 - water transport, GO:0006662 - glycerol ether metabolic process, GO:0045454 - cell redox homeostasis, GO:0009750 - response to fructose stimulus	TO:0002657 - oxidative stress	
14057	_	CENP-C	_	centromere protein C			1	AY693783, AY693789.		Os01g0617700	LOC_Os01g43050.1						
14058	_	ARC3	_	accumulation and replication of chloroplast, ARC3 homologue			9	a Chloroplast Division Factor. AB159444. GO:0035452: extrinsic to plastid membrane.		Os09g0555600	LOC_Os09g38330.1				GO:0009707 - chloroplast outer membrane, GO:0009570 - chloroplast stroma, GO:0043234 - protein complex, GO:0005525 - GTP binding, GO:0010020 - chloroplast fission, GO:0051258 - protein polymerization		
14059	_	OscytME2, cytME2	_	cytosolic NADP malic enzyme 2	_		5	AY435404, C26821, AU091724.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0186300	LOC_Os05g09440.1				GO:0016619 - malate dehydrogenase (oxaloacetate-decarboxylating) activity, GO:0006108 - malate metabolic process, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0050897 - cobalt ion binding, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0004473 - malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, GO:0051287 - NAD or NADH binding, GO:0051289 - protein homotetramerization, GO:0008270 - zinc ion binding, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance	
14060	_	OscytME3, OsEnS-13	_	cytosolic NADP malic enzyme 3, endosperm-specific gene 13	_		1	AY444338, CF321576. LOC_Os01g54030.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0743500	LOC_Os01g54030.1				GO:0006108 - malate metabolic process, GO:0046872 - metal ion binding, GO:0016619 - malate dehydrogenase (oxaloacetate-decarboxylating) activity, GO:0051287 - NAD or NADH binding		
14061	_	OsMTK2	_	Methylthioribose Kinase 2, MTR kinase 2			4	Q7XR60. CAE02820.	 Biochemical character	Os04g0669900	LOC_Os04g57410.1				GO:0005524 - ATP binding, GO:0019509 - methionine salvage, GO:0046522 - S-methyl-5-thioribose kinase activity		
14062	_	OsNAGK1, NAGK1	_	N-acetylglutamate kinase 1, N-acetyl glutamate kinase 1			4		 Biochemical character	Os04g0550500	LOC_Os04g46460.2, LOC_Os04g46460.1				GO:0006526 - arginine biosynthetic process, GO:0004349 - glutamate 5-kinase activity, GO:0006561 - proline biosynthetic process, GO:0009507 - chloroplast, GO:0003991 - acetylglutamate kinase activity		
14063	_	OsNAGK2, NAGK2	_	N-acetylglutamate kinase 2, N-acetyl glutamate kinase 2			2	AB183868.	 Biochemical character	Os02g0657600	LOC_Os02g44000.1				GO:0004349 - glutamate 5-kinase activity, GO:0009507 - chloroplast, GO:0006561 - proline biosynthetic process, GO:0006526 - arginine biosynthetic process, GO:0003991 - acetylglutamate kinase activity		
14064	_	OsGlnB	_				5	a bacterial PII-like protein. AB119279. Q6AUR2. GO:2000013: regulation of arginine biosynthetic process via ornithine.		Os05g0133100	LOC_Os05g04220.2, LOC_Os05g04220.1				GO:0010307 - acetylglutamate kinase regulator activity, GO:0042304 - regulation of fatty acid biosynthetic process, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0009534 - chloroplast thylakoid, GO:0006766 - vitamin metabolic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0044272 - sulfur compound biosynthetic process, GO:0000096 - sulfur amino acid metabolic process, GO:0019748 - secondary metabolic process, GO:0009744 - response to sucrose stimulus, GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009749 - response to glucose stimulus, GO:0007030 - Golgi organization, GO:0009718 - anthocyanin biosynthetic process, GO:0009072 - aromatic amino acid family metabolic process, GO:0000287 - magnesium ion binding, GO:0009750 - response to fructose stimulus, GO:0009409 - response to cold, GO:0006816 - calcium ion transport, GO:0008652 - cellular amino acid biosynthetic process, GO:0009108 - coenzyme biosynthetic process, GO:0006546 - glycine catabolic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009695 - jasmonic acid biosynthetic process, GO:0009106 - lipoate metabolic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006808 - regulation of nitrogen utilization, GO:0009399 - nitrogen fixation, GO:0009117 - nucleotide metabolic process, GO:0006733 - oxidoreduction coenzyme metabolic process, GO:0050790 - regulation of catalytic activity		
14065	_	OsAGPEP3	_	arabinogalactan peptide 3			5	A9UGV7. EU282464.		Os05g0541750					GO:0032578 - aleurone grain membrane, GO:0031225 - anchored to membrane, GO:0005773 - vacuole		
14066	_	OsAPRL1	_	adenosine 5'-phosphosulfate reductase-like protein 1			7	Q6Z4A7. AU100738 (C12491), AU197649 (S20244), AU197648 (S20244). OsAPR (adenosine 5'-phosphosulfate reductase). LOC_Os07g32570.	 Biochemical character	Os07g0509800	LOC_Os07g32570.2, LOC_Os07g32570.1				GO:0045454 - cell redox homeostasis, GO:0033741 - adenylyl-sulfate reductase (glutathione) activity, GO:0019419 - sulfate reduction, GO:0006790 - sulfur metabolic process, GO:0019344 - cysteine biosynthetic process, GO:0009973 - adenylyl-sulfate reductase activity, GO:0009570 - chloroplast stroma, GO:0000103 - sulfate assimilation, GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity, GO:0006950 - response to stress, GO:0046872 - metal ion binding, GO:0051539 - 4 iron, 4 sulfur cluster binding		
14068	_	OsQSOXL1	_	QSOX-like protein 1, quiescin-sulfhydryl oxidase-like protein 1			5	Q6AUC6.	 Biochemical character	Os05g0552500	LOC_Os05g47930.3, LOC_Os05g47930.2, LOC_Os05g47930.1				GO:0005576 - extracellular region, GO:0016972 - thiol oxidase activity, GO:0045454 - cell redox homeostasis		
14069	_	OsAPRL2, APRL2	_	adenosine 5'-phosphosulfate reductase-like protein 2, Adenosine 5'-phosphosulfate reductase-like 2			6	AY739306. Q67VZ8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0220800	LOC_Os06g11740.1				GO:0005783 - endoplasmic reticulum, GO:0006457 - protein folding, GO:0003756 - protein disulfide isomerase activity, GO:0045454 - cell redox homeostasis, GO:0046688 - response to copper ion, GO:0034976 - response to endoplasmic reticulum stress, GO:0016853 - isomerase activity, GO:0016021 - integral to membrane	TO:0000021 - copper sensitivity	
14070	_	OsAPRL3	_	adenosine 5'-phosphosulfate reductase-like protein 3			2	Q84P95. OsAPR (adenosine 5'-phosphosulfate reductase). LOC_Os02g51850.	 Biochemical character	Os02g0754900	LOC_Os02g51850.2, LOC_Os02g51850.1				GO:0016021 - integral to membrane, GO:0006790 - sulfur metabolic process, GO:0016853 - isomerase activity, GO:0045454 - cell redox homeostasis		
14071	_	OsAPRL4	_	adenosine 5'-phosphosulfate reductase-like protein 4			8	AY739307. Q5DJV7.	 Biochemical character	Os08g0412401	LOC_Os08g31814.2, LOC_Os08g31814.1				GO:0045454 - cell redox homeostasis, GO:0016021 - integral to membrane		
14072	_	OsAPRL5	_	adenosine 5'-phosphosulfate reductase-like protein 5			3	Q84M47. OsAPR (adenosine 5'-phosphosulfate reductase). LOC_Os03g59170.	 Biochemical character	Os03g0806500	LOC_Os03g59170.1				GO:0016021 - integral to membrane, GO:0045454 - cell redox homeostasis, GO:0006790 - sulfur metabolic process		
14073	_	OsAPRL6	_	adenosine 5'-phosphosulfate reductase-like protein 6			12										
14074	_	OsIDI2, IDI2	_	Fe-deficiency-induced protein 2			11	an alpha-subunit of eukaryotic initiation factor 2B (eIF2Ba)-like protein. eIF2B-like methylthioribose-1-phosphate isomerase. D24651, C71966, BR000390, BR000391. Q0ITU1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0216900	LOC_Os11g11050.1				GO:0010106 - cellular response to iron ion starvation, GO:0019252 - starch biosynthetic process, GO:0019509 - methionine salvage, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0000023 - maltose metabolic process, GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0003743 - translation initiation factor activity, GO:0005851 - eukaryotic translation initiation factor 2B complex, GO:0009506 - plasmodesma, GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity, GO:0043085 - positive regulation of catalytic activity, GO:0034224 - cellular response to zinc ion starvation	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	
14075	DMAS2	OsDMAS2	DEOXYMUGINEIC ACID SYNTHASE 2	sativa deoxymugineic acid synthase2, Deoxymugineic acid synthase2, Deoxymugineic acid synthase 2, deoxymugineic acid synthase2	DEOXYMUGINEIC ACID SYNTHASE 2												
14076	_	OsARF1	_	ADP-ribosylation factor1													
14077	_	OsRIC1	_	GTP-binding protein OsRIC1													
14078	MDM1	MDM1	TRANSPOSON MITE MDM1	transposon MITE MDM1, transposon:MITE MDM1, MDM1 element, Transposable Element MDM1					 Other						GO:0032196 - transposition		
14079	_	OsLSD1, OsLOL1, OsLSD1.1, LSD1.1, LSD1	_	zinc finger protein LSD1, LESION SIMULATING DISEASE1.1, LESION SIMULATING DISEASE 1.1	_		8	a rice (Oryza sativa) functional homolog of Arabidopsis LSD1. AY525368. Q0J7V9. OsLSD1 was re-designated as OsLOL1 because the function and sequence of this protein are more similar to LOL1 than to LSD1 (Wu et al. 2014). a C2C2-type zinc finger protein. LOC_Os08g06280. OsLOL1 in Huang et al. 2015. one of the five AtLSD1 homologs in rice genome.	 Coloration - Chlorophyll,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os08g0159500 	LOC_Os08g06280.9, LOC_Os08g06280.8, LOC_Os08g06280.7, LOC_Os08g06280.4, LOC_Os08g06280.3, LOC_Os08g06280.2, LOC_Os08g06280.1				GO:0005634 - nucleus, GO:0009845 - seed germination, GO:0012501 - programmed cell death, GO:0034051 - negative regulation of plant-type hypersensitive response, GO:0030154 - cell differentiation, GO:0043069 - negative regulation of programmed cell death, GO:0045595 - regulation of cell differentiation, GO:0009626 - plant-type hypersensitive response, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0006915 - apoptosis		PO:0005360 - aleurone layer , PO:0007057 - 0 seed germination stage 
14080	_	qUVR-10, OsPHR, OsCPD, CPD	_	CPD photolyase, cyclobutane pyrimidine dimer photolyase, deoxyribodipyrimidine photolyase			10	AB198743, AB198744. Q6F6A2. AB096003. AB099694. AB210109. a Class II DNA photolyase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0167600	LOC_Os10g08580.1				GO:0000166 - nucleotide binding, GO:0005739 - mitochondrion, GO:0034021 - response to silicon dioxide, GO:0006281 - DNA repair, GO:0009650 - UV protection, GO:0000719 - photoreactive repair, GO:0003677 - DNA binding, GO:0010224 - response to UV-B, GO:0003904 - deoxyribodipyrimidine photo-lyase activity, GO:0005634 - nucleus, GO:0010332 - response to gamma radiation	TO:0000601 - UV-B light sensitivity, TO:0000031 - silicon sensitivity	
14081	_	OsRPA32, RPA32, RPA2A	_	Replication protein A 32kDa subunit, RPA32kDa subunit, replication protein A 32 kDa subunit			2	AB037145, AU030219. Q6K9U2. LOC_Os02g58220. RPA2A in Shi et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0829100	LOC_Os02g58220.1				GO:0006260 - DNA replication, GO:0010332 - response to gamma radiation, GO:0006310 - DNA recombination, GO:0006281 - DNA repair, GO:0005634 - nucleus, GO:0003677 - DNA binding		
14082	_	OsRPA14, RPA14, RPA3	_	Replication protein A 14kDa subunit, replication protein A 14kDa, single-stranded DNA binding complex subunit 3			1	AB111915. Q9SDK9. LOC_Os01g14980. RPA3 in Zhang et al. 2015. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0253600	LOC_Os01g14980.2, LOC_Os01g14980.1				GO:0007126 - meiosis, GO:0006260 - DNA replication, GO:0006281 - DNA repair, GO:0006310 - DNA recombination, GO:0005634 - nucleus, GO:0003677 - DNA binding		
14083	_	Orysa;NAP1;1, OsNAP1_L1	_	nucleosome assembly protein 1-like protein 1, Nucleosome assembly protein 1;1, NAP1-like protein 1			6	AJ438611. B8B2R4, Q5VND6.		Os06g0149400	LOC_Os06g05660.5, LOC_Os06g05660.4, LOC_Os06g05660.3, LOC_Os06g05660.2, LOC_Os06g05660.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0009294 - DNA mediated transformation, GO:0006334 - nucleosome assembly, GO:0003682 - chromatin binding, GO:0046686 - response to cadmium ion, GO:0006289 - nucleotide-excision repair	TO:0000728 - cell cycle trait, TO:0000730 - mitotic cell cycle trait	
14084	_	Orysa;NAP1;2, OsNAP1_L2	_	nucleosome assembly protein 1-like protein 2, Nucleosome assembly protein 1;2, NAP1-like protein 2			5	AJ438612. B8AW64, Q53WK4.		Os05g0539700	LOC_Os05g46230.1				GO:0006334 - nucleosome assembly, GO:0006289 - nucleotide-excision repair, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0046686 - response to cadmium ion, GO:0009294 - DNA mediated transformation	TO:0000728 - cell cycle trait, TO:0000730 - mitotic cell cycle trait	
14085	_	Orysa;NAP1;3, OsNAP1_L3	_	nucleosome assembly protein 1-like protein 3, Nucleosome assembly protein 1;3			1	AY830122. Q5MGA9, A2ZX50.		Os01g0711800	LOC_Os01g51450.1				GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006289 - nucleotide-excision repair, GO:0006334 - nucleosome assembly, GO:0009294 - DNA mediated transformation, GO:0046686 - response to cadmium ion		
14086	IDHA	OsIDHa	ISOCITRATE DEHYDROGENASE SUBUNIT A	NAD-dependent isocitrate dehydrogenase a	ISOCITRATE DEHYDROGENASE SUBUNIT A		1	AB189167. an isocitrate dehydrogenase (IDH) catalytic subunit.	 Biochemical character	Os01g0276100	LOC_Os01g16900.3, LOC_Os01g16900.2, LOC_Os01g16900.1				GO:0051287 - NAD or NADH binding, GO:0009507 - chloroplast, GO:0006099 - tricarboxylic acid cycle, GO:0005524 - ATP binding, GO:0008270 - zinc ion binding, GO:0004449 - isocitrate dehydrogenase (NAD+) activity, GO:0000287 - magnesium ion binding, GO:0006102 - isocitrate metabolic process		
14087	IDHC	OsIDHc;2, IDHc;2	ISOCITRATE DEHYDROGENASE SUBUNIT C	NAD-dependent isocitrate dehydrogenase c;2	ISOCITRATE DEHYDROGENASE SUBUNIT C		2	LOC_Os02g38200. AB189169. an isocitrate dehydrogenase (IDH) regulatory subunit.	 Biochemical character	Os02g0595500	LOC_Os02g38200.1				GO:0004449 - isocitrate dehydrogenase (NAD+) activity, GO:0000287 - magnesium ion binding, GO:0051287 - NAD or NADH binding, GO:0006102 - isocitrate metabolic process, GO:0006099 - tricarboxylic acid cycle, GO:0008270 - zinc ion binding		
14088	LAR	OsLAR	LEUCOANTHOCYANIDIN REDUCTASE	leucoanthocyanidin reductase	LEUCOANTHOCYANIDIN REDUCTASE		3	BN000704.	 Biochemical character,  Coloration - Anthocyanin,  Coloration - Others,  Seed,  Tolerance and resistance - Stress tolerance	Os03g0259400	LOC_Os03g15360.1				GO:0009813 - flavonoid biosynthetic process, GO:0010023 - proanthocyanidin biosynthetic process, GO:0033788 - leucoanthocyanidin reductase activity, GO:0009416 - response to light stimulus	TO:0000707 - pericarp color, TO:0000075 - light sensitivity	
14089	_	p-SINE1-r461	_	transposon p-SINE1-r461				AB206042, AB206043 (Oryza rufipogon DNAs).	 Other						GO:0032196 - transposition		
14090	_	p-SINE1-r502	_	transposon p-SINE1-r502				AB206042, AB206043 (Oryza rufipogon DNAs),     AB206463 (Oryza sativa DNA).	 Other						GO:0032196 - transposition		
14091	GAD1	OsGAD1, GDC	GLUTAMATE DECARBOXYLASE 1	glutamate decarboxylase 1	GLUTAMATE DECARBOXYLASE 1		8	LOC_Os08g36320. AB056060, AB056062.	 Biochemical character	Os08g0465800 	LOC_Os08g36320.5, LOC_Os08g36320.4, LOC_Os08g36320.3, LOC_Os08g36320.2, LOC_Os08g36320.1				GO:0030170 - pyridoxal phosphate binding, GO:0006536 - glutamate metabolic process, GO:0004351 - glutamate decarboxylase activity		
14092	GAD2	OsGAD2	GLUTAMATE DECARBOXYLASE 2	glutamate decarboxylase 2	GLUTAMATE DECARBOXYLASE 2		4	AB056061, AB056063.	 Biochemical character	Os04g0447800	LOC_Os04g37500.1				GO:0030170 - pyridoxal phosphate binding, GO:0004351 - glutamate decarboxylase activity, GO:0006536 - glutamate metabolic process		
14094	_	OsCIA	_	cold-induced anther protein			10	DQ116755.	 Tolerance and resistance - Stress tolerance	Os10g0159700	LOC_Os10g07210.1					TO:0000432 - temperature response trait	
14095	_	OsPBF1	_	beta-6 subunit of 20 S proteasome, 20 S proteasome beta-6 subunit, 20S proteasome beta6 subunit			9	O64464. AB014058.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0505600	LOC_Os09g32800.1				GO:0051603 - proteolysis involved in cellular protein catabolic process, GO:0009817 - defense response to fungus, incompatible interaction, GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0005839 - proteasome core complex, GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity	TO:0000432 - temperature response trait	
14096	_		_	40 S ribosomal protein S12E, Ribosomal protein S12			7	D15650. 40 S ribosomal protein S12E in Imin et al. 2006.	 Tolerance and resistance - Stress tolerance	Os07g0229900 	LOC_Os07g12650.1				GO:0005840 - ribosome, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome	TO:0000432 - temperature response trait	
14097	_		_	Osmotin protein homologue			11	AAX95344.	 Tolerance and resistance - Stress tolerance	Os11g0703000	LOC_Os11g47670.1					TO:0000432 - temperature response trait	
14098	_	RMtATP6	_	mitochondrial ATP synthase 6 kDa subunit			3	AB055076.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0606200	LOC_Os03g40920.1						
14099	_	RMtATPb, atpB, AtpB	_	"mitochondrial ATP synthase b, \"mitochondrial ATP synthase complex, beta subunit\", mitochondrial F1-ATPase beta subunit, H+-transporting ATP synthase beta chain, beta subunit of ATP synthase, ATP synthase beta subunit"			5	D10491. D15470. Q01859. LOC_Os05g47980.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0553000	LOC_Os05g47980.1				GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), GO:0005747 - mitochondrial respiratory chain complex I, GO:0005730 - nucleolus, GO:0005886 - plasma membrane, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0008266 - poly(U) RNA binding, GO:0015986 - ATP synthesis coupled proton transport, GO:0005507 - copper ion binding, GO:0008270 - zinc ion binding, GO:0009941 - chloroplast envelope, GO:0006979 - response to oxidative stress, GO:0050897 - cobalt ion binding, GO:0005524 - ATP binding, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0046686 - response to cadmium ion	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000180 - spikelet fertility	
14100	_	RMtATPd1	_	mitochondrial ATP synthase d1			7		 Biochemical character	Os07g0495200	LOC_Os07g31300.1				GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0006833 - water transport, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0008270 - zinc ion binding, GO:0015986 - ATP synthesis coupled proton transport, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0046686 - response to cadmium ion, GO:0006096 - glycolysis, GO:0006972 - hyperosmotic response, GO:0006098 - pentose-phosphate shunt, GO:0009651 - response to salt stress, GO:0009266 - response to temperature stimulus, GO:0080129 - proteasome core complex assembly, GO:0009853 - photorespiration, GO:0051788 - response to misfolded protein, GO:0009060 - aerobic respiration, GO:0007030 - Golgi organization		
14101	_	RMtATPd2, OsMtATPd2, MtATPd2	_	mitochondrial ATP synthase d2			8		 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0478200	LOC_Os08g37320.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005507 - copper ion binding, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0009853 - photorespiration, GO:0080129 - proteasome core complex assembly, GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0022626 - cytosolic ribosome, GO:0005730 - nucleolus, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0051788 - response to misfolded protein, GO:0009535 - chloroplast thylakoid membrane, GO:0005774 - vacuolar membrane, GO:0008270 - zinc ion binding, GO:0015986 - ATP synthesis coupled proton transport	TO:0000074 - blast disease	
14102	NAD1	nad1, nadI, nadIB	NADH DEHYDROGENASE SUBUNIT 1	NADH dehydrogenase subunit 1	NADH DEHYDROGENASE SUBUNIT 1		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99377 (cultivar Nipponbare), DQ167807 (isolate PA64S). AY507930, AY507931, AY507932, AY507937, AY507934, AY507938 (O. sativa and other wild rice species). AY792569-AY792571 (wild rice species). BA000029: BAC19852 (Nipponbare complete mitochondrial genome). JN861111:AER13032, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03746 (indica IR6888 complete mitochondrial genome). AJ278413 (intron 1).	 Biochemical character						GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion, GO:0016021 - integral to membrane		
14103	NAD5	nad5	NADH DEHYDROGENASE SUBUNIT 5	NADH dehydrogenase subunit 5	NADH DEHYDROGENASE SUBUNIT 5		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99387 (cultivar Nipponbare), DQ167807 (isolate PA64S). D50565, D50566. BA000029: BAC19856 (Nipponbare complete mitochondrial genome). JN861111:AER12987, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome).  JF281153: AEZ03742 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005739 - mitochondrion, GO:0016021 - integral to membrane, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005743 - mitochondrial inner membrane, GO:0042773 - ATP synthesis coupled electron transport		
14104	RPS7	rps7	RIBOSOMAL PROTEIN S7	ribosomal protein S7	RIBOSOMAL PROTEIN S7		Mt	LOC_Osm1g00140. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99347 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19857 (Nipponbare complete mitochondrial genome). JN861111:AER13025 (indica Hassawi complete mitochondrial genome). JF281153: AEZ03756 (indica IR6888 complete mitochondrial genome).	 Other		LOC_Osm1g00140				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit, GO:0005739 - mitochondrion		
14105	_	orf490	_				Mt	LOC_Osm1g00150. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99382 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19858 (Nipponbare complete mitochondrial genome). JN861111:AER12982, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03755 (indica IR6888 complete mitochondrial genome). 			LOC_Osm1g00150				GO:0005739 - mitochondrion		
14106	_	orfB, atp8	_	ATPase subunit 8			Mt	LOC_Osm1g00170. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99386 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19860 (Nipponbare complete mitochondrial genome). JN861111: AER13023, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03753 (indica IR6888 complete mitochondrial genome). atp8 in JF281153.	 Biochemical character		LOC_Osm1g00170				GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0015986 - ATP synthesis coupled proton transport, GO:0050897 - cobalt ion binding, GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0005739 - mitochondrion, GO:0005773 - vacuole		
14107	_	orf181	_				Mt	BAC19861. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99373 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19861 (Nipponbare complete mitochondrial genome). JN861111: AER13009, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03752 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
14108	NAD6	nad6	NADH DEHYDROGENASE SUBUNIT 6	NADH dehydrogenase subunit 6	NADH DEHYDROGENASE SUBUNIT 6		Mt	LOC_Osm1g00190. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99371 (cultivar Nipponbare), DQ167807 (isolate PA64S). D64067 (partial). BA000029: BAC19862 (Nipponbare complete mitochondrial genome). AB763980, AB763986. JN861111: AER13003, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03751 (indica IR6888 complete mitochondrial genome). 	 Biochemical character		LOC_Osm1g00190				GO:0016021 - integral to membrane, GO:0045271 - respiratory chain complex I, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion		
14109	_	ccmC, orf240	_	cytochrome c biogenesis C			Mt	LOC_Osm1g00200. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99374 (cultivar Nipponbare), DQ167807 (isolate PA64S). D64067. BA000029: BAC19863 (Nipponbare complete mitochondrial genome). JN861111: AER12999, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03750 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00200				GO:0005739 - mitochondrion, GO:0015232 - heme transporter activity, GO:0008535 - respiratory chain complex IV assembly, GO:0016020 - membrane, GO:0017004 - cytochrome complex assembly		
14110	_	orf183	_				Mt	LOC_Osm1g00210. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99365 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19864 (Nipponbare complete mitochondrial genome). JN861111: AER13012, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03749 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00210				GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion, GO:0016021 - integral to membrane		
14111	_	orfX	_				Mt	LOC_Osm1g00220. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99358 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19865 (Nipponbare complete mitochondrial genome). JN861111: AER12995, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03748 (indica IR6888 complete mitochondrial genome).			LOC_Osm1g00220				GO:0016021 - integral to membrane, GO:0005739 - mitochondrion		
14112	NAD7	nad7	NADH DEHYDROGENASE SUBUNIT 7	NADH dehydrogenase subunit 7	NADH DEHYDROGENASE SUBUNIT 7		Mt	LOC_Osm1g00230. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99383 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19866 (Nipponbare complete mitochondrial genome). JN861111:AER13024, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153:AEZ03747 (indica IR6888 complete mitochondrial genome). AJ278408 (intron 3), AJ278410 (intron 4). 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00230				GO:0016651 - oxidoreductase activity, acting on NADH or NADPH, GO:0048038 - quinone binding, GO:0005739 - mitochondrion, GO:0051287 - NAD or NADH binding	TO:0000437 - male sterility	
14113	_	orf25, atp4	_	ATPase subunit 4			Mt	LOC_Osm1g00120. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99368 (cultivar Nipponbare), DQ167807 (isolate PA64S). M74241. Q00058. BA000029: BAC19854 (Nipponbare complete mitochondrial genome). JN861111:AER13008, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03744 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19854 and DQ167400: AAZ99368 (JN861111, JN861112, JF281153) are in conflict. atp4 in JF281153. 	 Biochemical character		LOC_Osm1g00120				GO:0005739 - mitochondrion, GO:0015986 - ATP synthesis coupled proton transport, GO:0016021 - integral to membrane, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0008270 - zinc ion binding		
14114	_	orf152a, orf152b	_				Mt	LOC_Osm1g00130. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99342 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19855 (Nipponbare complete mitochondrial genome). JN861111: AER13020, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03743 (indica IR6888 complete mitochondrial genome). orf152b in JF281153. The locations of BA000029: BAC19855 and DQ167400: AAZ99342 (JN861111, JN861112, JF281153) are in conflict. 			LOC_Osm1g00130				GO:0005739 - mitochondrion		
14115	RPS3	rps3	RIBOSOMAL PROTEIN S3	ribosomal protein S3	RIBOSOMAL PROTEIN S3		Mt	LOC_Osm1g00260. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99355 (cultivar Nipponbare), DQ167807 (isolate PA64S). D21251. P46773. S68845 (intron). BA000029: BAC19869 (Nipponbare complete mitochondrial genome). JN861111: AER12981, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AAZ99355 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19869 (DQ167400: AAZ99355) and JN861111: AER12981 (JF281153: AAZ99355) are in conflict.	 Other		LOC_Osm1g00260				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0005739 - mitochondrion, GO:0003723 - RNA binding		
14116	RPL16	rpl16, pseudo-rpl16	RIBOSOMAL PROTEIN L16	ribosomal protein L16	RIBOSOMAL PROTEIN L16		Mt	LOC_Osm1g00270. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99348 (cultivar Nipponbare), DQ167807 (isolate PA64S). D21251. P46801. BA000029 (Nipponbare complete mitochondrial genome). JN861111: AER13007, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). pseudogene (pseudo-rpl16) in BA000029 and JF281153. The loactions of DQ167400: AAZ99348 (BA000029: pseudo-rpl16) and JN861111: AER13007 (JF281153: rpl16 (pseudo)) are in conflict.	 Other		LOC_Osm1g00270				GO:0005840 - ribosome, GO:0005739 - mitochondrion, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0006412 - translation		
14117	NAD3	nad3	NADH DEHYDROGENASE SUBUNIT 3	NADH dehydrogenase subunit 3	NADH DEHYDROGENASE SUBUNIT 3		Mt	LOC_Osm1g00280. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99360 (cultivar Nipponbare), DQ167807 (isolate PA64S). M57904. D21251. BA000029: BAC19871 (Nipponbare complete mitochondrial genome). JN861111: AER13033, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03699 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19871 (DQ167400: AAZ99360) and JN861111: AER13033 (JF281153: AEZ03699) are in conflict.	 Biochemical character		LOC_Osm1g00280				GO:0005739 - mitochondrion, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005747 - mitochondrial respiratory chain complex I		
14118	RPS12	rps12	RIBOSOMAL PROTEIN S12	ribosomal protein S12	RIBOSOMAL PROTEIN S12		Mt	LOC_Osm1g00290. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99353 (cultivar Nipponbare), DQ167807 (isolate PA64S). M57904. P28520. D21251. BA000029: BAC19872 (Nipponbare complete mitochondrial genome). JN861111: AER13027, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153:AEZ03700 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19872 (DQ167400: AAZ99353) and JN861111: AER13027 (JF281153: AEZ03700) are in conflict.	 Other		LOC_Osm1g00290				GO:0015935 - small ribosomal subunit, GO:0005739 - mitochondrion, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
14119	_	orf224, orf224a, orf224b	_				Mt	LOC_Osm1g00300. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99350 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19873 (Nipponbare complete mitochondrial genome). JN861111:AEZ03701, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03701 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19873 (DQ167400: AAZ99350) and JN861111:AEZ03701 (JF281153: AEZ03701) are in conflict.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00300				GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0005739 - mitochondrion		
14120	RPS2	rps2, orf483	RIBOSOMAL PROTEIN S2	ribosomal protein S2	RIBOSOMAL PROTEIN S2		Mt	LOC_Osm1g00310. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99356 (cultivar Nipponbare), DQ167807 (isolate PA64S). D32052: BAA06825. BA000029: BAC19874 (Nipponbare complete mitochondrial genome). JN861111: AEZ03702, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19874 (DQ167400: AAZ99356) and JN861111: AEZ03702 are in conflict.	 Other		LOC_Osm1g00310				GO:0005739 - mitochondrion, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit		
14121	NAD4	nad4, nadIV	NADH DEHYDROGENASE SUBUNIT 4	NADH dehydrogenase subunit 4	NADH DEHYDROGENASE SUBUNIT 4		Mt	LOC_Osm1g00320. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99378 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19875 (Nipponbare complete mitochondrial genome). AB763979, AB763985. JN861111: AER13014, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03738 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00320				GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion, GO:0045271 - respiratory chain complex I, GO:0042773 - ATP synthesis coupled electron transport		
14122	_	cox2, coxII	_	cytochrome oxidase subunit 2, cytochrome oxidase subunit II, Cytochrome c oxidase subunit 2			Mt	LOC_Osm1g00330. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99344 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19876 (Nipponbare complete mitochondrial genome). JN861111: AER13026, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03737 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00330				GO:0004129 - cytochrome-c oxidase activity, GO:0005743 - mitochondrial inner membrane, GO:0009507 - chloroplast, GO:0070469 - respiratory chain, GO:0016021 - integral to membrane, GO:0005739 - mitochondrion, GO:0022900 - electron transport chain, GO:0005507 - copper ion binding		
14123	_	orf152b, orf152b-1, orf152	_				Mt	LOC_Osm1g00350. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99341 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19878 (Nipponbare complete mitochondrial genome). JN861111:AER13021, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03735 (indica IR6888 complete mitochondrial genome). orf152b-1 in JN861111 and JN861112. orf152 in JF281153. The location of orf152b in DQ167399 is in conflict.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00350				GO:0005739 - mitochondrion		
14124	_	atp6, N-atp6, B-ATP6, B-atp6, atp6-1	_	ATP synthase F0 subunit 6, ATPase subunit 6, N-ATPASE SUBUNIT 6, B-ATPASE SUBUNIT 6, ATPase subunit 6			Mt	LOC_Osm1g00370. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99389 (cultivar Nipponbare), DQ167807 (isolate PA64S). S59890, S59393. X52161, X52162. X52160 (urf-rmc, chimeric atp6). D14339. KC188737, KC188738. AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19880 (Nipponbare complete mitochondrial genome). JN861111: AER12990, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03734 (indica IR6888 complete mitochondrial genome). atp6-1 in JN861111 and JN861112.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00370				GO:0015986 - ATP synthesis coupled proton transport, GO:0005743 - mitochondrial inner membrane, GO:0016787 - hydrolase activity, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0015078 - hydrogen ion transmembrane transporter activity		
14125	_	orf176, orf173	_				Mt	LOC_Osm1g00420. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99345 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19884 (Nipponbare complete mitochondrial genome). JN861111: AER13013, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03704 (indica IR6888 complete mitochondrial genome). orf173 in JF281153. The locations of BA000029: BAC19884 (DQ167400: AAZ99345) and JN861111: AER13013 (JF281153: AEZ03704) are in conflict.			LOC_Osm1g00420				GO:0005739 - mitochondrion		
14126	_	orf161	_				Mt	LOC_Osm1g00340. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99367 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19877 (Nipponbare complete mitochondrial genome). JN861111: AER13015, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03736 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19877 and DQ167400: AAZ99367 are in conflict.			LOC_Osm1g00340				GO:0005739 - mitochondrion		
14127	_	orf187, orf187-1	_				Mt	LOC_Osm1g00360. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99343 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19879 (Nipponbare complete mitochondrial genome). JN861111: AER13043, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). orf187-1 in JN861111 and JN861112.The locations of BA000029: BAC19879 and DQ167400: AAZ99343 are in conflict.			LOC_Osm1g00360				GO:0005739 - mitochondrion		
14128	RPL2	rpl2	RIBOSOMAL PROTEIN L2	ribosomal protein L2	RIBOSOMAL PROTEIN L2		Mt	LOC_Osm1g00440. P92812, P0C8K6, Q2F969. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99354 (cultivar Nipponbare), DQ167807 (isolate PA64S). D78336. BA000029: BAC19886 (Nipponbare complete mitochondrial genome). JF281153:AEZ03727 (indica IR6888 complete mitochondrial genome). AB763981, AB763987. JN861111: AER12994, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19886 (DQ167400: AAZ99354, JF281153:AEZ03727) and JN861111: AER12994 are in conflict.	 Other		LOC_Osm1g00440				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0006412 - translation, GO:0003723 - RNA binding, GO:0015934 - large ribosomal subunit, GO:0009451 - RNA modification, GO:0003735 - structural constituent of ribosome, GO:0016740 - transferase activity, GO:0051788 - response to misfolded protein, GO:0080129 - proteasome core complex assembly, GO:0005739 - mitochondrion, GO:0009853 - photorespiration, GO:0006354 - RNA elongation		
14129	RPS19	rps19	RIBOSOMAL PROTEIN S19	ribosomal protein S19	RIBOSOMAL PROTEIN S19		Mt	LOC_Osm1g00450. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99372 (cultivar Nipponbare), DQ167807 (isolate PA64S). D78336. BA000029: BAC19887 (Nipponbare complete mitochondrial genome). JF281153: AEZ03726 (indica IR6888 complete mitochondrial genome). JN861111: AER13029, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19887 (DQ167400: AAZ99372, JF281153: AEZ03726) and JN861111: AER13029 are in conflict.	 Other		LOC_Osm1g00450				GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0005739 - mitochondrion, GO:0000166 - nucleotide binding, GO:0006354 - RNA elongation, GO:0005763 - mitochondrial small ribosomal subunit, GO:0006412 - translation		
14130	NAD4L	nad4L	NADH DEHYDROGENASE SUBUNIT 4L	NADH dehydrogenase subunit 4L	NADH DEHYDROGENASE SUBUNIT 4L		Mt	LOC_Osm1g00460. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99364 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19888 (Nipponbare complete mitochondrial genome). JF281153: AEZ03725 (indica IR6888 complete mitochondrial genome). JN861111: AER13030, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19888 (DQ167400: AAZ99364, JF281153: AEZ03725) and JN861111: AER13030 are in conflict.	 Biochemical character		LOC_Osm1g00460				GO:0005739 - mitochondrion, GO:0016651 - oxidoreductase activity, acting on NADH or NADPH, GO:0042773 - ATP synthesis coupled electron transport		
14131	GSLm	orf241, OsGSLm, OsGSLmt, GSLmt	BETA-1,3-GLUCANASE ACTIVITY M	Oryza sativa callose synthase m, callose synthase m			Mt	LOC_Osm1g00470. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99357 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19889 (Nipponbare complete mitochondrial genome). JF281153: AEZ03724 (indica IR6888 complete mitochondrial genome). JN861111: AER12998, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19889 (DQ167400: AAZ99357, JF281153: AEZ03724) and JN861111: AER12998 are in conflict.	 Biochemical character		LOC_Osm1g00470				GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0005739 - mitochondrion		
14132	_	mat-r, mat-r-1	_	maturase-related protein			Mt	LOC_Osm1g00490. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99385 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19891 (Nipponbare complete mitochondrial genome). AB763978, AB763984. JN861111: AER12976, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03722 (indica IR6888 complete mitochondrial genome). mat-r-1 in JN861111 and JN861112.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00490				GO:0006278 - RNA-dependent DNA replication, GO:0005739 - mitochondrion, GO:0003723 - RNA binding, GO:0006397 - mRNA processing, GO:0003964 - RNA-directed DNA polymerase activity	TO:0000437 - male sterility	
14133	RPS1	rps1, rps1a, rps1b, rps1-1	RIBOSOMAL PROTEIN S1	ribosomal protein S1	RIBOSOMAL PROTEIN S1		Mt	LOC_Osm1g00500. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99361 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19892 (Nipponbare complete mitochondrial genome). JN861111: AER13042, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03722 (indica IR6888 complete mitochondrial genome). rps1-1 in JN861111 and JN861112.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other		LOC_Osm1g00500				GO:0005840 - ribosome, GO:0005739 - mitochondrion		
14134	_	ccmFn, ccmFn-1	_	cytochrome c biogenesis Fn			Mt	LOC_Osm1g00510. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99384 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19893 (Nipponbare complete mitochondrial genome). AB763976, AB763977, AB763982, AB763983. JN861111: AER12978, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03718 (indica IR6888 complete mitochondrial genome). ccmFn-1 in JN861111 and JN861112.	 Biochemical character		LOC_Osm1g00510				GO:0005739 - mitochondrion, GO:0015232 - heme transporter activity, GO:0016020 - membrane, GO:0017004 - cytochrome complex assembly, GO:0008535 - respiratory chain complex IV assembly		
14135	_	ccmFc, ccmFc-1	_	cytochrome c biogenesis Fc			Mt	LOC_Osm1g00520. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99362 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19894 (Nipponbare complete mitochondrial genome). JN861111: AER12996, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03717 (indica IR6888 complete mitochondrial genome). ccmFc-1 in JN861111 and JN861112.			LOC_Osm1g00520				GO:0016021 - integral to membrane, GO:0005739 - mitochondrion		
14136	_	orf165, orf165-1	_				Mt	LOC_Osm1g00540. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99375 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19895 (Nipponbare complete mitochondrial genome). JN861111: AER13018, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03715 (indica IR6888 complete mitochondrial genome). orf165-1 in JN861111 and JN861112.			LOC_Osm1g00540				GO:0005739 - mitochondrion		
14137	_	orf284, orf284-1	_				Mt	LOC_Osm1g00530. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99359 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19896 (Nipponbare complete mitochondrial genome). JN861111: AER12992, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03714 (indica IR6888 complete mitochondrial genome). orf284-1 in JN861111 and JN861112.			LOC_Osm1g00530				GO:0005739 - mitochondrion		
14138	_	orf173, orf173-2	_				Mt	JN861111: AER13011, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). orf173-2 in JN861111, JN861112.							GO:0005739 - mitochondrion		
14139	_	orf162, orf162-2	_				Mt	DQ167807 (isolate PA64S). JN861111:AER13038, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). orf162-2 in JN861111 and JN861112.							GO:0005739 - mitochondrion		
14140	_	ccmB	_	cytochrome c biogenesis B			Mt	LOC_Osm1g00620. BA000029: BAC19903 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99363 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111:AER13000, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03761 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19903 (DQ167400: AAZ99363), JN861111: AER13000 and JF281153: AEZ03761 are in conflict.	 Biochemical character		LOC_Osm1g00620				GO:0017004 - cytochrome complex assembly, GO:0015232 - heme transporter activity, GO:0016020 - membrane, GO:0005739 - mitochondrion		
14141	_	orf160, orf160b	_				Mt	LOC_Osm1g00630. BA000029: BAC19904 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99351 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111: AER13016, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03759 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19904 (DQ167400: AAZ99351), JN861111: AER13016 and JF281153: AEZ03759 are in conflict. orf160b in JF281153.			LOC_Osm1g00630				GO:0005739 - mitochondrion		
14142	NAD2	nad2	NADH DEHYDROGENASE SUBUNIT 2	NADH dehydrogenase subunit 2	NADH DEHYDROGENASE SUBUNIT 2		Mt	LOC_Osm1g00640 (exon1-exon2 part).  DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99392 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19905 (Nipponbare complete mitochondrial genome). JF281153: AEZ03758 (indica IR6888 complete mitochondrial genome).  JN861111: AAZ99392, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19905, DQ167400:AAZ99392, JN861111: AAZ99392 and  JF281153: AEZ03758 are in conflict.	 Biochemical character		LOC_Osm1g00640				GO:0005739 - mitochondrion, GO:0042773 - ATP synthesis coupled electron transport, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
14143	_	atp1, atp1-2	_	ATP synthase F0 subunit 1			Mt	P0C521, P0C522. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99349 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111: AER12984, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). atp1-2 in JN861111 and JN861112.	 Biochemical character						GO:0009941 - chloroplast envelope, GO:0006979 - response to oxidative stress, GO:0009451 - RNA modification, GO:0005730 - nucleolus, GO:0005743 - mitochondrial inner membrane, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0005618 - cell wall, GO:0008270 - zinc ion binding, GO:0015986 - ATP synthesis coupled proton transport, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0005773 - vacuole, GO:0005524 - ATP binding, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0050897 - cobalt ion binding, GO:0005507 - copper ion binding, GO:0008266 - poly(U) RNA binding		
14144	_	trnP(TGG), trnP	_	tRNA-Pro			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (AB076665 and AB076666 -> replaced by BA000029, Nipponbare complete mitochondrial genome). 									
14145	_	trnM(CAT), trnM	_	tRNA-Met			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome).									
14146	_	trnH(GTG), trnH	_	tRNA-His			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). D13101 (a transferred chloroplast DNA sequence). 									
14147	_	trnP(TGG), trnP	_	tRNA-Pro			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). pseudo gene (pseudo-trnP) in BA000029. D13102 (a transferred chloroplast DNA sequence).									
14148	_	trnW(CCA), trnW	_	tRNA-Trp			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). D13102 (a transferred chloroplast DNA sequence).									
14149	_	trnQ(TTG), trnQ	_	tRNA-Gln			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14150	_	trnM(CAT), trnM	_	tRNA-Met			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The location of trnM(CAT) in DQ167399 is in conflict.									
14151	_	trnL(AAC), trnL	_	tRNA-Leu			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S).									
14152	_	trnI, pseudo-trnI	_	tRNA-Ile, tRNA-Ile pseudogene			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D13106 (a transferred chloroplast DNA sequence). D64067. BA000029 (Nipponbare complete mitochondrial genome). pseudo gene (pseudo-trnI) in BA000029.									
14153	_	trnI(CAT), trnI	_	tRNA-Ile			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14154	_	trnD(GTC), trnD	_	tRNA-Asp			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14155	_	trnN(GTT), trnN	_	tRNA-Asn, chloroplast-like tRNA-Asn			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). D13107 (a transferred chloroplast DNA sequence). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14156	_	trnK(TTT), trnK	_	tRNA-Lys			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14157	_	trnP(TGG), trnP	_	tRNA-Pro			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14158	_	trnM(CAT), trnM	_	tRNA-Met			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14159	_	trnH(GTG), trnH	_	tRNA-His			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14160	_	trnP(TGG), trnP	_	tRNA-Pro			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14161	_	trnW(CCA), trnW	_	tRNA-Trp			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14162	_	trnQ(TTG), trnQ	_	tRNA-Gln			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S).									
14163	_	trnfM(CAT), trnfM	_	tRNA-Met, initiator methionine tRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D32052. BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400 ): trnfM and JN861111 (JF281153 ): trnfM are in conflict.									
14164	_	trnS(TGA), trnS	_	tRNA-Ser			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400): trnS and JN861111 (JF281153): trnS are in conflict.									
14165	_	trnS(GCT), trnS	_	tRNA-Ser			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). M57903. BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14166	_	trnC(GCA), trnC	_	tRNA-Cys			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14167	_	trnF(GAA), trnF	_	tRNA-Phe			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14168	_	trnY(GTA), trnY	_	tRNA-Tyr			Mt	BA000029 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14169	_	trnE(TTC), trnE	_	tRNA-Glu			Mt	BA000029 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14170	_	trnC(GCA), trnC	_	tRNA-Cys			Mt	BA000029 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400):trnC, JN861111:trnC and JF281153:trnC are in conflict.									
14171	_	trnR(TCT), trnR	_	tRNA-Arg			Mt	BA000029 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D13099 (a transferred chloroplast DNA sequence). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400):trnR, JN861111:trnR and JF281153:trnR are in conflict.									
14172	_	trnS(GGA), trnS	_	tRNA-Ser			Mt	BA000029 (Nipponbare complete mitochondrial genome). D13112 (a transferred chloroplast DNA sequence). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). 									
14173	_	trnF(GAA), trnF	_	tRNA-Phe			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). D13112 (a transferred chloroplast DNA sequence). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). 									
14174	_	trnY(GTA), trnY	_	tRNA-Tyr			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14175	_	trnE(TTC), trnE	_	tRNA-Glu			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14176	5S  rRNA	rrn5	5S RIBOSOMAL RNA	5S ribosomal RNA, 5S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
14177	26S  rRNA	rrn26	26S RIBOSOMAL RNA	26S ribosomal RNA, 26S rRNA			Mt	BA000029 (Nipponbare complete mitochondrial genome). AB763989, AB763991. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D37988. JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14178	_	OsSrx	_	sulfiredoxin			6	DQ132851.	 Biochemical character	Os06g0174300	LOC_Os06g07760.1				GO:0032542 - sulfiredoxin activity, GO:0003677 - DNA binding, GO:0006979 - response to oxidative stress, GO:0005739 - mitochondrion		
14179	_	PHYLLO	_	chloroplast phylloquinone biosynthesis protein				BK005797.	 Biochemical character						GO:0000287 - magnesium ion binding, GO:0030976 - thiamin pyrophosphate binding, GO:0009063 - cellular amino acid catabolic process, GO:0009234 - menaquinone biosynthetic process, GO:0070204 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity, GO:0016836 - hydro-lyase activity		
14180	_	OsSYD, CHR720	_	SPLAYED			6	SNF2-like chromatin-remodeling ATPase. AY663851, D24562, AU057480.	 Biochemical character	Os06g0255300							
14181	_	OsBRM	_					an SNF2 ATPase.	 Biochemical character								
14182	_	OsCHR719	_					an SNF2 ATPase.	 Biochemical character								
14183	_	OsARFA1a, ARFA1a	_	ADP-ribosylation factor 4, ADP-ribosylation factor A1a			1	chilling tolerance related protein. D10859. Q06396. D22997 (replaced by C98347). LOC_Os01g59790. OsARFA1a in Muthamilarasan et al. 2016.	 Tolerance and resistance - Stress tolerance	Os01g0813400	LOC_Os01g59790.3, LOC_Os01g59790.2, LOC_Os01g59790.1				GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005525 - GTP binding, GO:0005507 - copper ion binding, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0016192 - vesicle-mediated transport, GO:0046686 - response to cadmium ion, GO:0005794 - Golgi apparatus		
14184	DER1	OsDER1	DERLIN 1	DERLIN-like protein 1	DERLIN 1		5	LOC_Os05g09550. a homolog of yeast and mammal DER1. chilling tolerance related protein. D10860. Q06397. GO:0036503: ERAD pathway.	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os05g0187800	LOC_Os05g09550.3, LOC_Os05g09550.2, LOC_Os05g09550.1				GO:0009408 - response to heat, GO:0034976 - response to endoplasmic reticulum stress, GO:0016021 - integral to membrane, GO:0006508 - proteolysis, GO:0006457 - protein folding, GO:0005783 - endoplasmic reticulum, GO:0010498 - proteasomal protein catabolic process, GO:0006986 - response to unfolded protein, GO:0005789 - endoplasmic reticulum membrane, GO:0009644 - response to high light intensity, GO:0042542 - response to hydrogen peroxide	TO:0000100 - shrunken endosperm, TO:0000104 - floury endosperm	
14185	_		_					chilling-inducible protein. Z54153.	 Tolerance and resistance - Stress tolerance						GO:0009966 - regulation of signal transduction		
14186	_	RASI, OsEnS-69	_	rice alpha-amylase/subtilisin inhibitor, alpha-amylase/subtilisin inhibitor, endosperm-specific gene 69			4	AY166458, AY166459. P29421. LOC_Os04g44470.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0526600	LOC_Os04g44470.1				GO:0015066 - alpha-amylase inhibitor activity, GO:0004867 - serine-type endopeptidase inhibitor activity		
14187	PEX5	OsPEX5, OsPex5pL, OsPex5pS, OsPex5L, OsPex5S, OsPex5p	PEROXIN 5	peroxin 5, PEROXISOMAL RECEPTOR PROTEIN 5	PEROXIN 5		8	peroxisomal targeting signal 1 receptor. PTS1 receptor. AY772415, AY772416.	 Biochemical character	Os08g0500100	LOC_Os08g39080.2, LOC_Os08g39080.1				GO:0006635 - fatty acid beta-oxidation, GO:0010351 - lithium ion transport, GO:0009733 - response to auxin stimulus, GO:0006891 - intra-Golgi vesicle-mediated transport, GO:0006869 - lipid transport, GO:0005052 - peroxisome matrix targeting signal-1 binding, GO:0006625 - protein targeting to peroxisome		
14188	PEX7	OsPex7, OsPex7p	PEROXIN 7	peroxin 7	PEROXIN 7				 Biochemical character								
14189	PEX14	OsPex14, OsPex14p, OsPEX14	PEROXIN 14	peroxin 14	PEROXIN 14		5	AY262026.	 Biochemical character	Os05g0101200	LOC_Os05g01090.3, LOC_Os05g01090.2, LOC_Os05g01090.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0003714 - transcription corepressor activity, GO:0005778 - peroxisomal membrane, GO:0016558 - protein import into peroxisome matrix		
14190	_	OsISI1	_	Impaired sucrose induction1, ISI1 homologue			6	AJ697744.		Os06g0129300	LOC_Os06g03850.1				GO:0006109 - regulation of carbohydrate metabolic process, GO:0009745 - sucrose mediated signaling		
14191	KANGOUROU	Kangourou	GYPSY TYPE RETROTRANSPOSON KANGOUROU	Ty3/gypsy LTR retrotransposon kangourou				DQ365821 (Oryza australiensis).	 Other						GO:0032196 - transposition		
14192	WALLABI	Wallabi	GYPSY TYPE RETROTRANSPOSON WALLABI	Ty3/gypsy LTR retrotransposon Wallabi				DQ365824 (Oryza australiensis).	 Other						GO:0032196 - transposition		
14193	DINGO	Dingo	GYPSY TYPE RETROTRANSPOSON DINGO	Ty3/gypsy LTR retrotransposon Dingo				DQ365822 (Oryza australiensis).	 Other						GO:0032196 - transposition		
14194	WOX9	OsWOX9, DWL1	WUSCHEL-LIKE HOMEOBOX 9	WUSCHEL-related homeobox 9, DWT-LIKE 1	WUSCHEL-LIKE HOMEOBOX 9		7	AM234752. A3BKM2. LOC_Os07g34880. Os07g0533100 (in Rap3 (build5)).	 Other	Os07g0533201 	LOC_Os07g34880.1				GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
14195	WOX9C	OsWOX9C, DWL2	WUSCHEL-LIKE HOMEOBOX 9C	WUSCHEL-related homeobox 9C, DWT-LIKE 2	WUSCHEL-LIKE HOMEOBOX 9C		5	AM234753. A3B6V0. LOC_Os05g48990.	 Other	Os05g0564500	LOC_Os05g48990.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0007275 - multicellular organismal development, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
14197	_	OsPMM	_	phosphomannomutase			4	DQ442992. Q7XPW5.	 Biochemical character	Os04g0682300	LOC_Os04g58580.2, LOC_Os04g58580.1				GO:0009651 - response to salt stress, GO:0006833 - water transport, GO:0019932 - second-messenger-mediated signaling, GO:0009266 - response to temperature stimulus, GO:0005829 - cytosol, GO:0046686 - response to cadmium ion, GO:0009298 - GDP-mannose biosynthetic process, GO:0007030 - Golgi organization, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0010498 - proteasomal protein catabolic process, GO:0004615 - phosphomannomutase activity, GO:0007010 - cytoskeleton organization, GO:0006094 - gluconeogenesis, GO:0006096 - glycolysis, GO:0019307 - mannose biosynthetic process, GO:0006972 - hyperosmotic response		
14198	_	OsSAHH, SAHH	_	AdoHcy hydrolase, Adenosylhomocysteinase, S-adenosyl-L-cystein hydrolase, S-adenosyl homocysteine hydrolase			11	AU064238. AY224544. D15532.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0455500	LOC_Os11g26850.3, LOC_Os11g26850.2				GO:0016441 - posttranscriptional gene silencing, GO:0006346 - methylation-dependent chromatin silencing, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005507 - copper ion binding, GO:0004013 - adenosylhomocysteinase activity, GO:0006730 - one-carbon metabolic process	TO:0000432 - temperature response trait	
14199	_	Os CCC2, OsCCC2, OsLAT8	_	cation-Cl- cotransporter 2, cation-chloride cotransporter 2			1	BN000835. Q657W3. LOC_Os01g19850.	 Biochemical character	Os01g0304100	LOC_Os01g19850.1				GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0015293 - symporter activity		
14200	_	Os CCC1, OsCCC1, CCC1, OsLAT9	_	cation-Cl- cotransporter 1, cation-chloride cotransporter 1, cation-chloride co-transporter			8	GU250733. C96646, AU166285. Q6Z0E2. GO:1902476: chloride transmembrane transport. GO:0071805: potassium ion transmembrane transport. LOC_Os08g23440.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0323700	LOC_Os08g23440.1				GO:0055078 - sodium ion homeostasis, GO:0008361 - regulation of cell size, GO:0030104 - water homeostasis, GO:0008511 - sodium:potassium:chloride symporter activity, GO:0005886 - plasma membrane, GO:0055064 - chloride ion homeostasis, GO:0055075 - potassium ion homeostasis, GO:0009826 - unidimensional cell growth, GO:0016021 - integral to membrane	TO:0000227 - root length, TO:0000432 - temperature response trait, TO:0000513 - potassium concentration, TO:0000526 - sodium concentration	PO:0000025 - root tip 
14201	_	snoR54	_	box C/D snoRNA snoR54, box C/D small nucleolar RNA snoR54			2	EF647623.									
14202	_	snoR72	_	box C/D snoRNA snoR72, box C/D small nucleolar RNA snoR72			6	EF647624.									
14203	_	snoR69Y	_	box C/D snoRNA snoR69Y, box C/D small nucleolar RNA snoR69Y			7	EF647625.									
14204	_	snoR64Ya	_	box C/D snoRNA snoR64Ya, box C/D small nucleolar RNA snoR64Ya			8	EF647626.									
14205	_	snoR64Yb	_	box C/D snoRNA snoR64Yb, box C/D small nucleolar RNA snoR64Yb			8	EF647627.									
14206	_	snoR13Y	_	box C/D snoRNA snoR13Y, box C/D small nucleolar RNA snoR13Y			2	EF647628.									
14207	_	snoR180	_	box C/D snoRNA snoR180, box C/D small nucleolar RNA snoR180			9	EF647629.									
14208	_	snoR181	_	box C/D snoRNA snoR181, box C/D small nucleolar RNA snoR181			2	EF647630.									
14209	_	snoR182	_	box C/D snoRNA snoR182, box C/D small nucleolar RNA snoR182			2	EF647631.									
14210	_	snoR183	_	box C/D snoRNA snoR183, box C/D small nucleolar RNA snoR183			2	EF647632.									
14211	_	snoR184	_	box C/D snoRNA snoR184, box C/D small nucleolar RNA snoR184			2	EF647633.									
14212	_	snoR185	_	box C/D snoRNA snoR185, box C/D small nucleolar RNA snoR185			7	EF647634.									
14213	_	snoR186	_	box C/D snoRNA snoR186, box C/D small nucleolar RNA snoR186			7	EF647635.									
14214	_	snoR187	_	box C/D snoRNA snoR187, box C/D small nucleolar RNA snoR187			6	EF647636.									
14215	_	snoR188	_	box C/D snoRNA snoR188, box C/D small nucleolar RNA snoR188			6	EF647637.									
14216	_	snoR189	_	box C/D snoRNA snoR189, box C/D small nucleolar RNA snoR189			6	EF647638.									
14217	_	snoR190	_	box C/D snoRNA snoR190, box C/D small nucleolar RNA snoR190			6	EF647639.									
14218	_	snoR191	_	box C/D snoRNA snoR191, box C/D small nucleolar RNA snoR191			9	EF647640.									
14219	_	OsCLE101, CLE101	_	CLV3/ESR-related 101, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 101			1	AB332048.		Os01g0170900 	LOC_Os01g07620.1						
14220	_	OsCLE102, CLE102	_	CLV3/ESR-related 102, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 102			1	AB332049.		Os01g0339400	LOC_Os01g23705.1						
14221	_	OsCLE103, CLE103	_	CLV3/ESR-related 103, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 103			1	AB332050.		Os01g0509400	LOC_Os01g32560.1						
14222	_	OsCLE104, CLE104	_	CLV3/ESR-related 104, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 104				AB332051.									
14223	_	OsCLE201, CLE201	_	CLV3/ESR-related 201, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 201				AB332052.									
14224	_	OsCLE203, CLE203	_	CLV3/ESR-related 203, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 203			2	AB332054.									
14225	_	OsCLE204, CLE204	_	CLV3/ESR-related 204, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 204			2	AB332055.									
14226	_	OsCLE205, CLE205	_	CLV3/ESR-related 205, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 205			2	AB332056.		Os02g0809300	LOC_Os02g56490.1						
14227	_	OsCLE206, CLE206	_	CLV3/ESR-related 206, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 206			2	AB332057.		Os02g0826300	LOC_Os02g58000.1						
14228	_	OsCLE301, CLE301	_	CLV3/ESR-related 301, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 301			3	AB332058.		Os03g0111000							
14229	_	OsCLE302, CLE302	_	CLV3/ESR-related 302, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 302			3	AB332059.		Os03g0260432							
14230	_	OsCLE303, CLE303	_	CLV3/ESR-related 303, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 303			3	AB332060.		Os03g0366100	LOC_Os03g25060.1						
14231	_	OsCLE304, CLE304	_	CLV3/ESR-related 304, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 304			3	AB332061.									
14232	_	OsCLE305, CLE305	_	CLV3/ESR-related 305, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 305			3	AB332062.		Os03g0692100	LOC_Os03g48570.1						
14233	_	OsCLE306, CLE306	_	CLV3/ESR-related 306, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 306			3	AB332063.									
14234	_	OsCLE401, CLE401	_	CLV3/ESR-related 401, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 401			4	AB332064.									
14236	_	OsCLE403, CLE403	_	CLV3/ESR-related 403, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 403			4	AB332066.									
14237	_	OsCLE404, CLE404	_	CLV3/ESR-related 404, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 404			4	AB332067.		Os04g0658800	LOC_Os04g56370.1						
14238	_	OsCLE501, CLE501	_	CLV3/ESR-related 501, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 501			5	AB332068.									
14239	_	OsCLE502, CLE502	_	CLV3/ESR-related 502, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 502			5	AB332069.		Os05g0117300	LOC_Os05g02630.1						
14240	_	OsCLE503, CLE503	_	CLV3/ESR-related 503, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 503			5	AB332070.		Os05g0170600 	LOC_Os05g07840.1, LOC_Os05g07830.1						
14241	_	OsCLE504, CLE504	_	CLV3/ESR-related 504, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 504			5	AB332071.									
14242	_	OsCLE505, CLE505	_	CLV3/ESR-related 505, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 505			5	AB332072.									
14243	_	OsCLE506, CLE506	_	CLV3/ESR-related 506, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 506			5	AB332073.									
14244	_	OsCLE507, CLE507	_	CLV3/ESR-related 507, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 507			5	AB332074.		Os05g0505900 	LOC_Os05g43030.1						
14245	_	OsCLE508, CLE508	_	CLV3/ESR-related 508, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 508				AB332075.									
14246	_	OsCLE509, CLE509	_	CLV3/ESR-related 509, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 509			5	AB332076.									
14247	_	OsCLE601, CLE601	_	CLV3/ESR-related 601, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 601			6	AB332077.									
14248	_	OsCLE602, CLE602	_	CLV3/ESR-related 602, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 602			6	AB332078.									
14249	_	OsCLE603, CLE603	_	CLV3/ESR-related 603, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 603			6	AB332079.		Os06g0697300	LOC_Os06g48220.1						
14250	_	OsCLE701, CLE701	_	CLV3/ESR-related 701			7	AB332080. LOC_Os07g09625. Os07g0194350 (in Ncbi and UniProt).		Os07g0194400	LOC_Os07g09625.1						
14251	_	OsCLE801, CLE801	_	CLV3/ESR-related 801, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 801			8	AB332081.									
14254	_		_				11	chitinase.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0702100	LOC_Os11g47600.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
14255	_		_				11	chitinase.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0702200	LOC_Os11g47610.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
14256	_	RCB4	_	chitinase RCB4			10	class III chitinase. AF350426.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0416100	LOC_Os10g28050.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
14257	_		_				11	chitinase.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0701900	LOC_Os11g47590.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity		
14258	_	prx66	_	class III peroxidase 66			5	BN000595.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0134700	LOC_Os05g04410.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14259	_	POD2, OsPOD2, PRX13, OSPRX13	_	peroxidase			1	.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0326300	LOC_Os01g22249.1				GO:0020037 - heme binding, GO:0005576 - extracellular region, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0042744 - hydrogen peroxide catabolic process, GO:0006979 - response to oxidative stress, GO:0046688 - response to copper ion, GO:0050832 - defense response to fungus	TO:0000021 - copper sensitivity, TO:0000074 - blast disease	
14260	LE	OsRHC1, RHC1, OsLE	LARGE EMBRYO	RING-HC protein 1, large embryo		le	3	a RING zinc finger protein. C3HC4-type RING finger protein. EF624461. ABF98464.	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0706900 	LOC_Os03g49900.1				GO:0005773 - vacuole, GO:0008270 - zinc ion binding	TO:0000113 - giant embryo	PO:0009010 - seed 
14261	_	OsCSP1	_	cold shock domain protein 1, CSD protein 1			2	EU658926.	 Tolerance and resistance - Stress tolerance	Os02g0121100	LOC_Os02g02870.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
14262	_	OsCSP2, CPS2	_	cold shock domain protein 2, CSD protein 2, Glycine-rich protein 2, cold shock protein 2			8	EU658927. D16054.	 Tolerance and resistance - Stress tolerance	Os08g0129200	LOC_Os08g03520.1				GO:0003729 - mRNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003697 - single-stranded DNA binding, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0003690 - double-stranded DNA binding, GO:0005730 - nucleolus, GO:0048316 - seed development, GO:0010228 - vegetative to reproductive phase transition, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0008270 - zinc ion binding, GO:0051775 - response to redox state, GO:0032508 - DNA duplex unwinding, GO:0048443 - stamen development		
14263	GLUB3.P	GluB-3.P, GluB-3	GLUTELIN B3 PSEUDOGENE				2	EU264105 (promoter sequence). X54193.									
14264	_	Mtr1, MTR1, PDT, ADT	_	prephenate dehydratase, arogenate dehydratase, 5MT resistant 1, 5-methyltryptophan resistant 1		mtr1-D	7	AB300404.	 Biochemical character	Os07g0694600	LOC_Os07g49390.1				GO:0009507 - chloroplast, GO:0016597 - amino acid binding, GO:0004664 - prephenate dehydratase activity, GO:0047769 - arogenate dehydratase activity, GO:0009094 - L-phenylalanine biosynthetic process		
14266	_	PcIMT1	_	"inositol methyl transferase 1, Porteresia coarctata
inositol methyl transferase 1"				EU240449. Oryza coarctata (Wild rice).	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity		
14267	_	OsPDF1A	_	peptide deformylase 1A			1	EU213045. B6RGY0.	 Biochemical character	Os01g0555800	LOC_Os01g37510.1				GO:0005506 - iron ion binding, GO:0009570 - chloroplast stroma, GO:0006412 - translation, GO:0042586 - peptide deformylase activity		
14268	_	OsPDF1B	_	peptide deformylase 1B		pdf1b	1	EU213046. Q5VNN5.	 Biochemical character	Os01g0637600	LOC_Os01g45070.2, LOC_Os01g45070.1				GO:0042586 - peptide deformylase activity, GO:0005739 - mitochondrion, GO:0005506 - iron ion binding, GO:0006412 - translation, GO:0009570 - chloroplast stroma		
14269	_	OsPDF1B2, OsPDF1B2.p	_	peptide deformylase 1B2, peptide deformylase 1B2 pseudogene				EU213047.									
14270	_	OsGSR1, GASR7	_	GAST family gene in rice 1, GA-stimulated transcript family gene in rice 1			6	AY604180. GASR7 in Li et al. 2016. LOC_Os06g15620.	 Vegetative organ - Leaf	Os06g0266800	LOC_Os06g15620.1				GO:0009741 - response to brassinosteroid stimulus, GO:0016132 - brassinosteroid biosynthetic process, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0002676 - brassinosteroid content, TO:0000206 - leaf angle	
14271	_	OsGASR1, GASR1	_	GAST (GA-stimulated transcript) homolog 1, GAST homolog 1, GA-stimulated transcript homolog 1, GA-stimulated transcript-related gene 1		osgasr1	3	LOC_Os03g55290. BAD67542. AB192574. a member of the GAST (gibberelin (GA)-Stimulated Transcript) family. GO:1900140: regulation of seedling development.	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Leaf	Os03g0760800	LOC_Os03g55290.1				GO:0008283 - cell proliferation, GO:0009739 - response to gibberellin stimulus, GO:0010229 - inflorescence development, GO:0009411 - response to UV, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0009826 - unidimensional cell growth, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000166 - gibberellic acid sensitivity, TO:0000135 - leaf length, TO:0000160 - UV light sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0000005 - cultured plant cell , PO:0020148 - shoot apical meristem , PO:0020147 - root apical meristem , PO:0020123 - root cap , PO:0000055 - bud 
14272	_	OsGASR2, GASR2	_	GAST (GA-stimulated transcript) homolog 2, GAST homolog 2, GA-stimulated transcript homolog 2, GA-stimulated transcript-related gene 2			4	BAD67543. AB192575.	 Vegetative organ - Shoot apical meristem(SAM)	Os04g0465300 	LOC_Os04g39110.2, LOC_Os04g39110.1				GO:0005618 - cell wall, GO:0010229 - inflorescence development, GO:0009739 - response to gibberellin stimulus, GO:0048046 - apoplast, GO:0008283 - cell proliferation	TO:0000166 - gibberellic acid sensitivity, TO:0000621 - inflorescence development trait	PO:0020148 - shoot apical meristem , PO:0020147 - root apical meristem , PO:0020123 - root cap , PO:0000005 - cultured plant cell , PO:0001083 - inflorescence development stage 
14273	_	DWF1, DIM/DWF1, DIM	_				4		 Biochemical character,  Reproductive organ - panicle	Os04g0570500	LOC_Os04g48200.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
14274	_	OsCAS	_	beta-cyanoalanine synthase			4	AY720933. GO:0080147: root hair cell development.	 Biochemical character,  Tolerance and resistance	Os04g0165700	LOC_Os04g08350.4, LOC_Os04g08350.3, LOC_Os04g08350.2, LOC_Os04g08350.1				GO:0006096 - glycolysis, GO:0006535 - cysteine biosynthetic process from serine, GO:0006833 - water transport, GO:0006972 - hyperosmotic response, GO:0007030 - Golgi organization, GO:0009266 - response to temperature stimulus, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009684 - indoleacetic acid biosynthetic process, GO:0009750 - response to fructose stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019500 - cyanide catabolic process, GO:0019761 - glucosinolate biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0032880 - regulation of protein localization, GO:0042744 - hydrogen peroxide catabolic process, GO:0046686 - response to cadmium ion, GO:0050017 - L-3-cyanoalanine synthase activity, GO:0051410 - detoxification of nitrogen compound, GO:0005507 - copper ion binding, GO:0004124 - cysteine synthase activity		
14275	DR10	OsDR10	PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 10	defense-responsive gene 10, pathogen-induced defense-responsive protein 10	PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 10		8	FJ194952. CX109127.	 Tolerance and resistance - Disease resistance	Os08g0155900	LOC_Os08g05960.1				GO:0009863 - salicylic acid mediated signaling pathway		
14276	_	OsDHODH1	_	dihydroorotate dehydrogenase 1			2	DQ102485.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0736400	LOC_Os02g50350.2, LOC_Os02g50350.1				GO:0006207 - 'de novo' pyrimidine base biosynthetic process, GO:0006222 - UMP biosynthetic process, GO:0043562 - cellular response to nitrogen levels, GO:0009570 - chloroplast stroma, GO:0006212 - uracil catabolic process, GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity, GO:0004158 - dihydroorotate oxidase activity		
14277	TID1	OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5	TWISTED DWARF 1	TWISTED DWARF1, Tubulin alpha-2, Tubulin alpha-2 chain, small and round seed 5	ALPHA TUBLIN	Tid1-1, Srs5	11	LOC_Os11g14220. AB512760. Q53M52. X91807. D29735.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os11g0247300	LOC_Os11g14220.1				GO:0003924 - GTPase activity, GO:0005737 - cytoplasm, GO:0051258 - protein polymerization, GO:0051510 - regulation of unidimensional cell growth, GO:0005874 - microtubule, GO:0007017 - microtubule-based process, GO:0046688 - response to copper ion, GO:0005525 - GTP binding, GO:0005200 - structural constituent of cytoskeleton	TO:0000484 - seed shape, TO:0000021 - copper sensitivity, TO:0000391 - seed size, TO:0000734 - grain length, TO:0000146 - seed length, TO:0000397 - grain size	
14278	_	eIF4Gtsv1, tsv1, eIF4G	_	Rice tungro spherical virus (RTSV) resistance gene, RTSV resistance gene, eukaryotic translation initiation factor 4G			7	GQ203288, GQ203289, GQ203290. B9FXV5.	 Tolerance and resistance - Disease resistance	Os07g0555200	LOC_Os07g36940.2, LOC_Os07g36940.1				GO:0009630 - gravitropism, GO:0009615 - response to virus, GO:0009737 - response to abscisic acid stimulus, GO:0000226 - microtubule cytoskeleton organization, GO:0000911 - cytokinesis by cell plate formation, GO:0003677 - DNA binding, GO:0016070 - RNA metabolic process, GO:0003743 - translation initiation factor activity, GO:0006417 - regulation of translation		
14279	_	OmBBD	_	O. minuta bifunctional nuclease in basal defense response				DQ872164. Q09LL3. GO:0090305: nucleic acid phosphodiester bond hydrolysis.	 Biochemical character,  Tolerance and resistance - Disease resistance						GO:0004518 - nuclease activity, GO:0005634 - nucleus		
14280	_	OsBBD1	_				1	OmBBD homolog. Q5N8J3. GO:0090305: nucleic acid phosphodiester bond hydrolysis.	 Biochemical character	Os01g0702000	LOC_Os01g50622.4, LOC_Os01g50622.3, LOC_Os01g50622.2, LOC_Os01g50622.1				GO:0050832 - defense response to fungus, GO:0004518 - nuclease activity, GO:0005634 - nucleus		
14281	RPL27-1	rpl27-1, rpl27, mtRPL27b, S27	MITOCHONDRIAL RIBOSOMAL PROTEIN L27	"mitochondrial ribosomal protein L27, F1 pollen sterility
gene S27"	MITOCHONDRIAL RIBOSOMAL PROTEIN L27		8	AB496674. AB576647 (Oryza nivara). A loss-of-function allele of F1 pollen sterility gene S27 in Oryza nivara, S27-nivs is composed of two tandem mitochondrial ribosomal protein L27 genes (mtRPL27a and mtRPL27b), both of which are inactive. S27-glums (O. glumaepatula allele).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0404300	LOC_Os08g31228.1				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
14282	RPL27-3	rpl27-3, rpl27, mtRPL27a	MITOCHONDRIAL RIBOSOMAL PROTEIN L27	mitochondrial ribosomal protein L27	MITOCHONDRIAL RIBOSOMAL PROTEIN L27		4		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0003735 - structural constituent of ribosome		
14283	_	ZN, OsZN	_	ZEBRA-NECROSIS		zn	6	a thylakoid-bound protein. EU430513. GO:0035444: nickel cation transmembrane transport.	 Coloration	Os06g0116400	LOC_Os06g02580.1				GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0015087 - cobalt ion transmembrane transporter activity, GO:0015099 - nickel ion transmembrane transporter activity		
14284	_	OsZNL	_	zebra-necrosis like protein			3	EU430514. GO:0035444: nickel cation transmembrane transport.		Os03g0156700	LOC_Os03g06090.1				GO:0015099 - nickel ion transmembrane transporter activity, GO:0015087 - cobalt ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding		
14285	_	OsDOG1L-1	_	OsDOG1-like-1			1	a rice homolog of Arabidopsis DOG1.	 Other	Os01g0306400	LOC_Os01g20030.1				GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent		
14286	_	OsDOG1L-2, DOG1L-2	_	OsDOG1-like-2, DOG1-like-2			1	a rice homolog of Arabidopsis DOG1.	 Reproductive organ - panicle,  Other	Os01g0159000	LOC_Os01g06560.2, LOC_Os01g06560.1				GO:0010229 - inflorescence development, GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
14287	_	OsDOG1L-3	_	OsDOG1-like-3			5	a rice homolog of Arabidopsis DOG1.	 Other	Os05g0560200	LOC_Os05g48650.1				GO:0006351 - transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding		
14288	_	SSD1	_	sword shape dwarf1		ssd1	3	AB516771.	 Vegetative organ - Culm	Os03g0302900	LOC_Os03g19080.3, LOC_Os03g19080.2, LOC_Os03g19080.1						
14289	CIN5	OsCIN5, OsCIN6	CELL-WALL INVERTASE 5	cell-wall invertase 5, cell-wall invertase 6	CELL-WALL INVERTASE 5		4	AY578162. AY575553. Q56UD1. GO:0071836: nectar secretion. GO:0080167: response to karrikin. OsCIN6 in Ji et al. 2005.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0664900	LOC_Os04g56930.2, LOC_Os04g56930.1				GO:0005982 - starch metabolic process, GO:0048046 - apoplast, GO:0031219 - levanase activity, GO:0009611 - response to wounding, GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0004575 - sucrose alpha-glucosidase activity, GO:0051670 - inulinase activity	TO:0000074 - blast disease	
14290	CIN6	OsCIN6, OsCIN7, CIN7	CELL-WALL INVERTASE 6	cell-wall invertase 6, cell-wall invertase 7	CELL-WALL INVERTASE 6		4	AY578163. AY575554. Q56UD0. GO:0071836: nectar secretion. GO:0080167: response to karrikin. OsCIN7 in Ji et al. 2005.	 Biochemical character	Os04g0664800	LOC_Os04g56920.1				GO:0004575 - sucrose alpha-glucosidase activity, GO:0031219 - levanase activity, GO:0009611 - response to wounding, GO:0005982 - starch metabolic process, GO:0051670 - inulinase activity, GO:0005618 - cell wall, GO:0005773 - vacuole, GO:0048046 - apoplast		
14291	CIN8.P	OsCIN8, OsCIN8.P, CIN8	CELL-WALL INVERTASE 8 PSEUDOGENE	cell-wall invertase 8 pseudogene			9	AY578165.									
14292	_	OsLS	_	Lumazine Synthase			4	GQ202237.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0497400	LOC_Os04g42000.1				GO:0009570 - chloroplast stroma, GO:0009231 - riboflavin biosynthetic process, GO:0006007 - glucose catabolic process, GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016740 - transferase activity, GO:0009349 - riboflavin synthase complex		
14293	_	RAVL1, RAVL	_	RAV-Like1, RAV-like 1 protein, RAV-LIKE 1		ravl1, ravl1-1, ravl1-2	4	LOC_Os04g49230. HM450152. Q7F9W2. RAVL in Chen et al. 2015. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Other	Os04g0581400	LOC_Os04g49230.1				GO:0009742 - brassinosteroid mediated signaling, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0010104 - regulation of ethylene mediated signaling pathway	TO:0000326 - leaf color, TO:0000206 - leaf angle, TO:0000227 - root length	
14294	_	OsBBI1	_	BLAST AND BTH INDUCED 1			6	HQ123581, HQ123582. a RING finger protein with E3 ligase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0125800	LOC_Os06g03580.4, LOC_Os06g03580.3, LOC_Os06g03580.2, LOC_Os06g03580.1				GO:0008270 - zinc ion binding, GO:0016874 - ligase activity		
14295	CYP734A2	OsCYP734A2	CYTOCHROME P450 HYDROXYLASE 734A2	Cytochrome P450 734A2	CYTOCHROME P450 HYDROXYLASE 734A2		2	LOC_Os02g11020. AB488666. Q6Z6D6. a rice homolog of Arabidopsis BAS1.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM)	Os02g0204700	LOC_Os02g11020.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009741 - response to brassinosteroid stimulus, GO:0010268 - brassinosteroid homeostasis, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0008395 - steroid hydroxylase activity, GO:0009055 - electron carrier activity, GO:0040008 - regulation of growth, GO:0020037 - heme binding, GO:0016133 - brassinosteroid catabolic process, GO:0016131 - brassinosteroid metabolic process, GO:0016021 - integral to membrane, GO:0009416 - response to light stimulus		
14296	CYP734A4	OsCYP734A4	CYTOCHROME P450 HYDROXYLASE 734A4		CYTOCHROME P450 HYDROXYLASE 734A4		6	LOC_Os06g39880. AB488667. Q69XM6. a rice homolog of Arabidopsis BAS1.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM)	Os06g0600400	LOC_Os06g39880.1				GO:0009741 - response to brassinosteroid stimulus, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0008395 - steroid hydroxylase activity, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0009416 - response to light stimulus, GO:0016131 - brassinosteroid metabolic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0040008 - regulation of growth, GO:0016133 - brassinosteroid catabolic process, GO:0020037 - heme binding, GO:0010268 - brassinosteroid homeostasis	TO:0000492 - leaf shape, TO:0002689 - leaf sheath length	
14297	CYP734A5		CYTOCHROME P450 HYDROXYLASE 734A5		CYTOCHROME P450 HYDROXYLASE 734A5		7	AB488668. Q8LIF2. a rice homolog of Arabidopsis BAS2.	 Biochemical character	Os07g0647200	LOC_Os07g45290.1				GO:0009416 - response to light stimulus, GO:0005506 - iron ion binding, GO:0008395 - steroid hydroxylase activity, GO:0009055 - electron carrier activity, GO:0009741 - response to brassinosteroid stimulus, GO:0010268 - brassinosteroid homeostasis, GO:0016021 - integral to membrane, GO:0016131 - brassinosteroid metabolic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
14298	CYP734A6	OsCYP734A6	CYTOCHROME P450 HYDROXYLASE 734A6		CYTOCHROME P450 HYDROXYLASE 734A6		1	LOC_Os01g29150. AB488669. B9X287. a rice homolog of Arabidopsis BAS1.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM)	Os01g0388000	LOC_Os01g29150.1				GO:0040008 - regulation of growth, GO:0005506 - iron ion binding, GO:0010268 - brassinosteroid homeostasis, GO:0016133 - brassinosteroid catabolic process, GO:0009055 - electron carrier activity, GO:0004497 - monooxygenase activity, GO:0016131 - brassinosteroid metabolic process, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
14299	_	trnL(AAC), trnL	_	tRNA-Leu			Pt	AY792515-AY792524 (O.sativa and other wild rice species).									
14300	_	OIP30	_	OsCPK25/26-interacting protein 30				a RuvB-Like DNA Helicase 2 (RuvBL2). JF793663.							GO:0043141 - ATP-dependent 5'-3' DNA helicase activity, GO:0005524 - ATP binding, GO:0032508 - DNA duplex unwinding		
14301	_	DNG701	_	DNA glycosylase/lyase DNG701, DNA glycosylase/lyase 701		dng701, dng701-1, dng701-2	5	FJ536320.	 Biochemical character						GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0006284 - base-excision repair, GO:0004519 - endonuclease activity, GO:0016829 - lyase activity		
14302	_	DNG704	_	DNA glycosylase/lyase DNG704, DNA glycosylase/lyase 704													
14303	_	RKb2	_	receptor-kinase gene b2			11	OoRKb2  and OmRKb2 could be generated through tandem duplication or unequal crossover. They were truncated and appeared to encode only an incomplete kinase domain.									
14304	LAX2	OsLAX2, Gnp4/LAX2, Gnp4	LAX PANICLE 2	lax panicle2, Grain number per-panicle 4		lax2, lax2-1, lax2-2, lax2-3, gnp4	4	AB669025. KY673700. Regulate axillary meristem formation process. a RING-finger and wd40-associated ubiquitin-like (RAWUL) domain-containing protein.	 Reproductive organ - Inflorescence,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os04g0396500	LOC_Os04g32510.1				GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0030307 - positive regulation of cell growth	TO:0000152 - panicle number, TO:0000050 - inflorescence branching, TO:0000734 - grain length, TO:0000163 - auxin sensitivity, TO:0002759 - grain number, TO:0000382 - 1000-seed weight	
14305	_	STR2	_	ABC transporter STR2, Medicago truncatula stunted arbuscule 2		str2-1	7	JN608806.	 Biochemical character,  Vegetative organ - Root	Os07g0191600	LOC_Os07g09384.1				GO:0016020 - membrane, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
14306	_	FCL1	_	Fused Compound Leaf1			3	HQ695003.							GO:0003677 - DNA binding, GO:0005634 - nucleus		
14307	_	FCL2	_	Fused Compound Leaf2			3	HQ695004.							GO:0005634 - nucleus, GO:0003677 - DNA binding		
14308	_	trnK(TTT), trnK	_	tRNA-Lys			Pt	HE574131 (Oryza meridionalis), HE586098 (Oryza coarctata).									
14309	_	orf126	_				Mt	JF281154 (indica WA-CMS (wild abortive cytoplasmic male sterility) complete mitochondrial genome).  One of two candidate WA-CSM-associated ORFs that may cause the male sterility phenotype carried by the WA-CMS mitochondrial genome. Chimeric ORF of orf284, rpl2 and urf.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion		
14310	_	orf86d	_				Mt	JF281154 (indica WA-CMS (wild abortive cytoplasmic male sterility) complete mitochondrial genome).  One of two candidate WA-CSM-associated ORFs that may cause the male sterility phenotype carried by the WA-CMS mitochondrial genome. Chimeric ORF of orf61 and atp1.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion		
14311	_	XIAO	_	LRR-RLK protein XIAO			4	JQ234882. a putative LRR receptor-like kinase.		Os04g0576900	LOC_Os04g48760.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14312	_	LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1	_	light-harvesting chlorophyll a/b-binding protein b1.2			3	D00642. Q10HD0. homologous to AT2G05070 (LHCB2.2).	 Biochemical character	Os03g0592500	LOC_Os03g39610.1, LOC_Os03g39610.2				GO:0009522 - photosystem I, GO:0009765 - photosynthesis, light harvesting, GO:0009637 - response to blue light, GO:0046872 - metal ion binding, GO:0009523 - photosystem II, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0016168 - chlorophyll binding, GO:0018298 - protein-chromophore linkage, GO:0010287 - plastoglobule, GO:0010218 - response to far red light, GO:0009535 - chloroplast thylakoid membrane, GO:0010114 - response to red light, GO:0009941 - chloroplast envelope		
14313	PIL16	APG, OsPIL16, OsbHLH106	_	ANTAGONIST OF PGL1, PHYTOCHROME INTERACTING FACTOR-LIKE 16, basic helix-loop-helix protein 106			5	AB667900.	 Seed - Morphological traits	Os05g0139100	LOC_Os05g04740.2, LOC_Os05g04740.1					TO:0000734 - grain length	
14314	_	YSA	_	young seedling albino		ysa	3	JN167987. a pentatricopeptide repeat (PPR) gene family protein.	 Coloration	Os03g0597200 	LOC_Os03g40020.1				GO:0009507 - chloroplast, GO:0004386 - helicase activity, GO:0048481 - ovule development, GO:0016226 - iron-sulfur cluster assembly, GO:0010228 - vegetative to reproductive phase transition, GO:0010027 - thylakoid membrane organization, GO:0009793 - embryonic development ending in seed dormancy		
14315	_	OsYs15	_	yellow stripe-like gene 15			5										
14316	_	OsYs10	_	yellow stripe-like gene 10			4										
14317	_	SI1	_	sucrose induced 1			2	U16255, D15350.	 Other	Os02g0553600	LOC_Os02g34840.1, LOC_Os02g34830.1				GO:0003677 - DNA binding, GO:0003713 - transcription coactivator activity, GO:0006355 - regulation of transcription, DNA-dependent		
14318	_	SR3	_	sucrose repressed 3			2	U16257, D15888.		Os02g0823600							
14319	_	SI2	_	sucrose induced 2			3	U16747.		Os03g0796000	LOC_Os03g58170.2, LOC_Os03g58170.1						
14320	_	SR1	_	sucrose repressed 1				U16256.									
14321	_	SR4	_	sucrose repressed 4				U16748.									
14322	_	M1	_	B1-homologous mitochondrial plasmid-like DNA 1			Mt	D50618 (Oryza officinalis).									
14323	_	M2	_	B1-homologous mitochondrial plasmid-like DNA 2			Mt	D50619 (Oryza officinalis).									
14324	_	M3	_	B1-homologous mitochondrial plasmid-like DNA 3			Mt	D50620 (Oryza latifolia).									
14325	_	U3	_	U3 snRNA, U3 small nuclear RNA			4	X79685.									
14326	TUBA3	OsTubA3, TubA3, OS-TubA1, TubA1	TUBULIN ALPHA-3 CHAIN	Tubulin alpha-3 chain, Tubulin alpha-3, tubulin alpha-1 chain	TUBULIN ALPHA-3 CHAIN		3	LOC_Os03g51600. X91806. D16089, D15886. Tubulin alpha-1 chain and Tubulin alpha-2 chain in Sasaki et al. 1994.  OS-TubA1 in Qin et al. 1997.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0726100	LOC_Os03g51600.2, LOC_Os03g51600.1				GO:0003924 - GTPase activity, GO:0051258 - protein polymerization, GO:0007017 - microtubule-based process, GO:0005874 - microtubule, GO:0005737 - cytoplasm, GO:0005198 - structural molecule activity, GO:0005525 - GTP binding, GO:0005200 - structural constituent of cytoskeleton, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
14327	_	OsPAF1	_	C2 subunit of the 20S proteasome, 20S proteasome C2 subunit, 20S proteasome alpha6 subunit			2	D37886. P52428.	 Biochemical character	Os02g0133800	LOC_Os02g04100.1				GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus		
14328	SUMO1	smt3, SMT3, OsSUMO1	SMALL UBIQUITIN LIKE MODIFIER 1	small ubiquitin like modifier 1, small ubiquitin like modifier protein 1, SUMO protein 1	SMALL UBIQUITIN LIKE MODIFIER 1		1	X99608. P55857. GO:0044389: ubiquitin-like protein ligase binding.	 Tolerance and resistance - Stress tolerance	Os01g0918300	LOC_Os01g68950.1				GO:0009651 - response to salt stress, GO:0016925 - protein sumoylation, GO:0031386 - protein tag, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0006001 - salt tolerance	
14329	_	HPT	_	homogentisic phytyltransferase				AX046728.	 Biochemical character								
14330	_		_	Prolamine 7			5	a major rice prolamine. Y00747. Q0DJ45.	 Seed - Physiological traits - Storage substances	Os05g0329100/Os05g0329300/Os05g0329350					GO:0005773 - vacuole, GO:0033095 - aleurone grain, GO:0045735 - nutrient reservoir activity		
14331	EXPB1A	OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1	BETA-EXPANSIN 1A	Major pollen allergen Ory s 1, Expansin-B1, Beta-expansin-1, Expansin-B1A, Beta-expansin-1A	BETA-EXPANSIN 1A		3	U31771. AF261270. Q40638. a group-1 allergen of rice pollen.		Os03g0106500	LOC_Os03g01610.1				GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0019953 - sexual reproduction, GO:0016020 - membrane		
14332	_	OsProDH	_	Proline dehydrogenase			10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0550900	LOC_Os10g40360.1				GO:0006537 - glutamate biosynthetic process, GO:0004657 - proline dehydrogenase activity, GO:0006562 - proline catabolic process		
14333	SAP8	Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1	STRESS ASSOCIATED PROTEIN GENE 8	rice (indica) stress associated protein gene8, Zinc finger A20 and AN1 domain-containing stress-associated protein 8, O. sativa subspecies indica stress-associated protein 8, stress-associated protein 8	STRESS ASSOCIATED PROTEIN 8		6	AY345599. A2YEZ6, A3BDI8. AU068611, AU166664. BF889485. P. vulgaris PVPR3 protein homolog. OsSAP1 in de Freitas et al. 2019.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0612800	LOC_Os06g41010.4, LOC_Os06g41010.3, LOC_Os06g41010.1				GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0006950 - response to stress, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus	TO:0000303 - cold tolerance, TO:0000432 - temperature response trait, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	
14334	PIL11	OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4	_	PHYTOCHROME INTERACTING FACTOR-LIKE 11, basic helix-loop-helix protein 102, Phytochrome interacting factor 4			12	a homolog of OsbHLH107.	 Reproductive organ - Heading date,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os12g0610200	LOC_Os12g41650.2, LOC_Os12g41650.5, LOC_Os12g41650.4, LOC_Os12g41650.3				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009628 - response to abiotic stimulus	TO:0002616 - flowering time, TO:0000168 - abiotic stress trait, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000276 - drought tolerance	
14335	PIL12	OsPIL12, OsbHLH103, bHLH103	_	PHYTOCHROME INTERACTING FACTOR-LIKE 12, basic helix-loop-helix protein 103			3		 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os03g0639300	LOC_Os03g43810.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0002616 - flowering time, TO:0000276 - drought tolerance	
14336	PIL14	OsPIL14, OsbHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta	_	PHYTOCHROME INTERACTING FACTOR-LIKE 14, Phytochrome Interacting factor 3-Like 14, basic helix-loop-helix protein 104, phytochrome-interacting factor 14			7	LOC_Os07g05010. JN400276 (PIF4).	 Tolerance and resistance - Stress tolerance	Os07g0143200	LOC_Os07g05010.1, LOC_Os07g05010.3, LOC_Os07g05010.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009416 - response to light stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0080134 - regulation of response to stress	TO:0000075 - light sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	
14337	PIL15	OsPIL15, OsbHLH105, PIF3, OsPIF3	_	PHYTOCHROME INTERACTING FACTOR-LIKE 15, phytochrome-interacting factor-like protein 15, Phytochrome interacting factor 3			1	a basic helix-loop-helix factor.	 Reproductive organ - Heading date,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os01g0286100					GO:0051302 - regulation of cell division, GO:0010184 - cytokinin transport, GO:0005634 - nucleus, GO:0009832 - plant-type cell wall biogenesis, GO:0009639 - response to red or far red light, GO:0009640 - photomorphogenesis, GO:0009664 - plant-type cell wall organization, GO:0009734 - auxin mediated signaling pathway	TO:0000163 - auxin sensitivity, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0002660 - cytokinin content	
14338	_	OsHFR, OsbHLH101	_	long hypocotyl in far-red													
14339	_	OsLF, LF, OsbHLH119	_	late flowering, basic helix-loop-helix protein 119			5	floral repressor. a repressor of Hd1. LOC_Os05g46370.	 Reproductive organ - Heading date	Os05g0541400	LOC_Os05g46370.1				GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time	
14340	RSUS4	SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4	SUCROSE SYNTHASE 4	Rice sucrose synthase-4, Sucrose synthase 4, Sucrose-UDP glucosyltransferase 4, Sucrose synthase-4, rice SuSy gene 4	SUCROSE SYNTHASE 4		3	Q10LP5.	 Biochemical character	Os03g0340500	LOC_Os03g22120.3, LOC_Os03g22120.2, LOC_Os03g22120.1				GO:0005985 - sucrose metabolic process, GO:0016157 - sucrose synthase activity, GO:0009058 - biosynthetic process		
14341	RSUS5	SUS5, SS5, OsScS5, RSs5, RSus5, OsSUS5	SUCROSE SYNTHASE 5	Rice sucrose synthase-5, Sucrose synthase 5, Sucrose-UDP glucosyltransferase 5, Sucrose synthase-5, rice SuSy gene 5	SUCROSE SYNTHASE 5		4	H6TFZ4. HQ895723.	 Biochemical character	Os04g0309600	LOC_Os04g24430.1				GO:0005985 - sucrose metabolic process, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016157 - sucrose synthase activity, GO:0005737 - cytoplasm		
14342	RSUS6	SUS6, SS6, OsScS6, RSs6, RSus6, OsSUS6	SUCROSE SYNTHASE 6	Rice sucrose synthase-6, Sucrose synthase 6, Sucrose-UDP glucosyltransferase 6, Sucrose synthase-6, rice SuSy gene 6	SUCROSE SYNTHASE 6		2	Q6K973.	 Biochemical character	Os02g0831500/Os02g0831650					GO:0005985 - sucrose metabolic process, GO:0016157 - sucrose synthase activity, GO:0009058 - biosynthetic process		
14343	RSUS7	SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7	SUCROSE SYNTHASE 7	Rice sucrose synthase-7, Sucrose synthase 7, Sucrose-UDP glucosyltransferase 7, Sucrose synthase-7, rice SuSy gene 7	SUCROSE SYNTHASE 7		4	Q7XNX6. HQ895725.	 Biochemical character	Os04g0249500	LOC_Os04g17650.1				GO:0005985 - sucrose metabolic process, GO:0005737 - cytoplasm, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016157 - sucrose synthase activity		
14344	_	LDC, PAP15, OsPAP15	_	lysine decarboxylase			3	LOC_Os03g63074. a phosphatase implicated in Pi recycling.	 Biochemical character	Os03g0848100	LOC_Os03g63074.3, LOC_Os03g63074.2, LOC_Os03g63074.1				GO:0030170 - pyridoxal phosphate binding, GO:0008152 - metabolic process, GO:0003824 - catalytic activity		
14345	_	OsEXO1, OsExo1, EXO1	_	Exonuclease-1, exonuclease 1			1	AB179769. Q60GC1. GO:0090305: nucleic acid phosphodiester bond hydrolysis. LOC_Os01g56940. flap endonuclease. a putative meiosis-related gene.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0777300	LOC_Os01g56940.1				GO:0004519 - endonuclease activity, GO:0004527 - exonuclease activity, GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0007126 - meiosis, GO:0006281 - DNA repair, GO:0005634 - nucleus		
14346	_	OsDGL1	_	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 1, Glycosyltransferase 48 kDa subunit precursor		Osdgl1	7	Q6ZLK0.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os07g0209000	LOC_Os07g10830.1				GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity, GO:0018279 - protein amino acid N-linked glycosylation via asparagine	TO:0002649 - pesticide sensitivity	
14347	_	OsASR2, OsASR4, Asr4, ASR2	_	"Abiotic Stress Responsive 2, \"ABA-, stress and ripening-induced protein 4\""			4	OsASR4 in Philippe et al. 2010 and Perez-Diaz et al. 2013. LOC_Os04g34600.	 Tolerance and resistance - Stress tolerance	Os04g0423400	LOC_Os04g34600.1				GO:0006950 - response to stress		
14348	_	OsCPn60alpha1, OsCPn60a1	_	chaperonin 60 alpha subunit 1			12		 Biochemical character	Os12g0277500	LOC_Os12g17910.1				GO:0005524 - ATP binding, GO:0006457 - protein folding, GO:0005737 - cytoplasm		
14349	_	OsCPn60alpha2, OsCPn60a2	_	chaperonin 60 alpha subunit 2			3		 Biochemical character	Os03g0859600/Os03g0859700					GO:0005737 - cytoplasm, GO:0044267 - cellular protein metabolic process, GO:0005524 - ATP binding		
14350	_	OsCPn60beta1, OsCPn60b1	_	chaperonin 60 beta subunit 1			6	T-complex protein. LOC_Os06g02380.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0114000	LOC_Os06g02380.2, LOC_Os06g02380.1				GO:0042026 - protein refolding, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0005737 - cytoplasm	TO:0000303 - cold tolerance	
14351	_	OsCPn60beta2, OsCPn60b2	_	chaperonin 60 beta subunit 2, chaperonin 62.5K beta-chain			2	D16066.	 Biochemical character	Os02g0102900	LOC_Os02g01280.1				GO:0042026 - protein refolding, GO:0005524 - ATP binding, GO:0005737 - cytoplasm		
14352	_	OsCPn60beta3, OsCPn60b3	_	chaperonin 60 beta subunit 3					 Biochemical character								
14353	BOR2	OsBOR2	EFFLUX BORON TRANSPORTER 2	Boron transporter 2	EFFLUX BORON TRANSPORTER 2		1		 Biochemical character	Os01g0175700	LOC_Os01g08020.1				GO:0005452 - inorganic anion exchanger activity, GO:0016021 - integral to membrane		
14354	BOR4	OsBOR4	EFFLUX BORON TRANSPORTER 4	Boron transporter 4	EFFLUX BORON TRANSPORTER 4	osbor4	5	DQ421409. Pollen-Specific Boron Efflux Transporter. TO:0006043: boron concentration.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os05g0176800	LOC_Os05g08430.1				GO:0046713 - boron transport, GO:0009846 - pollen germination, GO:0005452 - inorganic anion exchanger activity, GO:0009566 - fertilization, GO:0016021 - integral to membrane, GO:0009860 - pollen tube growth	TO:0000421 - pollen fertility	
14355	_	OsIRX10, IRX10	_	rice ortholog of Arabidopsis IRX10, IRREGULAR XYLEM10		Osirx10	1	Q8S1X7. LOC_Os01g70200.	 Biochemical character	Os01g0926700	LOC_Os01g70200.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
14356	HTAS	OsHTAS	HEAT TOLERANCE AT SEEDLING STAGE	heat tolerance at seedling stage		OsHTASa, OsHTASb, oshtas	9	primery candidates: Os09g0320400 (transporter) and Os09g0323100 (zinc finger) in Wei et al. 2013. LOC_Os09g15430. KU133655. RING Finger Ubiquitin E3 Ligase. GO:0090333: regulation of stomatal closure. TO:0020095: stomatal process related trait.	 Tolerance and resistance - Stress tolerance	Os09g0323100 	LOC_Os09g15430.4, LOC_Os09g15430.3, LOC_Os09g15430.2, LOC_Os09g15430.1				GO:0006970 - response to osmotic stress, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0042542 - response to hydrogen peroxide, GO:0016021 - integral to membrane, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0010118 - stomatal movement, GO:0008270 - zinc ion binding, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0009738 - abscisic acid mediated signaling	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf 
14357	_	Osj10gBTF3, 10gBTF3, BTF3a	_	BTF3a RNA pol B, BTF3a RNA polymerase B, beta-subunit of nascent polypeptide-associated complex			10	LOC_Os10g34180. a basal transcription factor 3-like gene. BTF3a in Cooper et al. 2003. AY224531. GO:0090351:seedling development.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os10g0483000	LOC_Os10g34180.2, LOC_Os10g34180.1				GO:0009845 - seed germination, GO:0009555 - pollen development		PO:0001007 - pollen development stage 
14358	_	Osj3g1BTF3, BTF3a, Os03g1BTF3	_	BTF3a RNA pol B, BTF3a RNA polymerase B, Transcription factor BTF3a			3	a basal transcription factor 3-like gene. AY224525. D22894. LOC Os03g01910. GO:0090351:seedling development.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0109600	LOC_Os03g01910.2, LOC_Os03g01910.1				GO:0042742 - defense response to bacterium, GO:0009845 - seed germination, GO:0009651 - response to salt stress	TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance	
14359	_	Osj3g2BTF3, BTF3b, Os03g2BTF3	_	Transcription factor BTF3b			3	a basal transcription factor 3-like gene. Transcription factor BTF3b in Sasaki et al. 1994. D15593. LOC Os03g63400. GO:0090351: seedling development.		Os03g0851000	LOC_Os03g63400.2, LOC_Os03g63400.1				GO:0009845 - seed germination		
14360	EIF3E	eIF-3e, OseIF3e	EUKARYOTIC INITIATION FACTOR 3E	Eukaryotic translation initiation factor 3 subunit e	EUKARYOTIC INITIATION FACTOR 3E		7	TO:0000832: flag leaf anatomy and morphology trait.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os07g0222300	LOC_Os07g12110.1				GO:0010152 - pollen maturation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0006446 - regulation of translational initiation, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0003743 - translation initiation factor activity, GO:0001731 - formation of translation preinitiation complex, GO:0010555 - response to mannitol stimulus	TO:0000269 - 100-seed weight, TO:0000399 - grain thickness, TO:0000145 - internode length, TO:0000040 - panicle length, TO:0000262 - panicle shape, TO:0000734 - grain length, TO:0000207 - plant height, TO:0000456 - spikelet number, TO:0006032 - panicle size, TO:0000227 - root length, TO:0002757 - flag leaf length	
14361	EIF3H	eIF-3h, OseIF3h	EUKARYOTIC INITIATION FACTOR 3H	"\"eukaryotic translation initiation factor 3, subunit h\", Eukaryotic translation initiation factor 3 subunit h"	EUKARYOTIC INITIATION FACTOR 3H		4	LOC_Os04g30780.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0376500	LOC_Os04g30780.2, LOC_Os04g30780.1				GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0006446 - regulation of translational initiation, GO:0001731 - formation of translation preinitiation complex, GO:0003743 - translation initiation factor activity		
14362	_	OsPPR676, PPR676	_	pentatricopeptide repeat protein 676	_	osppr676, osppr676-1, osppr676-2, osppr676-3	3	LOC_Os03g11670. an Rf (fertility restorer)-like protein. OsPPR676 is the orthologue of maize ATP4 and Arabidopsis SVR7. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0215900	LOC_Os03g11670.1				GO:0040007 - growth, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0048653 - anther development, GO:0019252 - starch biosynthetic process, GO:0016051 - carbohydrate biosynthetic process, GO:0009555 - pollen development, GO:0006633 - fatty acid biosynthetic process, GO:0009516 - leucoplast, GO:0009509 - chromoplast	TO:0000040 - panicle length, TO:0000053 - pollen sterility, TO:0000135 - leaf length	PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0025313 - tapetum 
14363	_	OsPPR920	_	pentatricopeptide repeat protein 920	_		5	an Rf (fertility restorer)-like protein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0275100	LOC_Os05g19390.1						
14364	HSP82B	OsHSP82, hsp82B, HSP82	HEAT SHOCK PROTEIN 82B	Heat shock protein 82, Heat shock protein 81-2	HEAT SHOCK PROTEIN 82B		9	Q69QQ6. Z15018. Heat shock protein 81-2 in Song et al. 2013.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os09g0482100	LOC_Os09g30412.1				GO:0006457 - protein folding, GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0046688 - response to copper ion, GO:0051082 - unfolded protein binding, GO:0005524 - ATP binding	TO:0000021 - copper sensitivity	
14365	_	OsVIP1-1	_	VirE-interacting protein 1-1					 Tolerance and resistance - Disease resistance								
14366	_	OsVIP1-2	_	VirE-interacting protein 1-2					 Tolerance and resistance - Disease resistance								
14367	_	OsSSIIaChr7	_	soluble starch synthase IIa on Chromosome 7			7	LOC_Os07g13880.			LOC_Os07g13880						
14368	ALDH22A1	OsALDH22, ALDH22, OsALDH22A1	ALDEHYDE DEHYDROGENASE 22A1	aldehyde dehydrogenase 22, rice homolog of Arabidopsis ALDH22	ALDEHYDE DEHYDROGENASE 22A1		7	LOC_Os07g48920.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0688800	LOC_Os07g48920.1				GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor		
14369	_	OsSRH3	_	short root hair 3		ossrh3	1	OsSRH3 locus was mapped to a 37.7 kb region between the markers S38978 and S39016 on chromosome 1.	 Vegetative organ - Root								
14370	_	OsGSK3	_	glycogen synthase kinase3, glycogen synthase kinase 3			5	DQ060684.	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14371	NTRA	OsNTRA, NtrA	NADPH-DEPENDENT THIOREDOXIN REDUCTASE A	NADPH-dependent thioredoxin reductase A, NADP-thioredoxin reductase A	NADPH-DEPENDENT THIOREDOXIN REDUCTASE A		6	Q69PS6. cytoplasmic/mitochondrial type NTR.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0327300	LOC_Os06g22140.1				GO:0004791 - thioredoxin-disulfide reductase activity, GO:0005737 - cytoplasm, GO:0050660 - FAD binding, GO:0019430 - removal of superoxide radicals, GO:0045454 - cell redox homeostasis		
14372	NTRB	OsNTRB, NtrB	NADPH-DEPENDENT THIOREDOXIN REDUCTASE B	NADPH-dependent thioredoxin reductase B, NADP-thioredoxin reductase B, NADPH-dependent Trx reductase B	NADPH-DEPENDENT THIOREDOXIN REDUCTASE A		2	Q6ZFU6. cytoplasmic/mitochondrial type NTR.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0713400	LOC_Os02g48290.1				GO:0004791 - thioredoxin-disulfide reductase activity, GO:0019430 - removal of superoxide radicals, GO:0005737 - cytoplasm, GO:0045454 - cell redox homeostasis, GO:0050660 - FAD binding		
14374	SLB2																
14375	_	OsMRS2-3	_	MRS2/MGT family member 3			1	Q8L4S2.	 Biochemical character	Os01g0908500	LOC_Os01g68040.1				GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity		
14376	_	OsMRS2-5	_	MRS2/MGT family member 5			3	Q10S25.	 Biochemical character	Os03g0137700	LOC_Os03g04480.1				GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity		
14377	_	OsMRS2-6	_	MRS2/MGT family member 6			3	Q9AUK4.	 Biochemical character	Os03g0684400	LOC_Os03g48000.3, LOC_Os03g48000.2, LOC_Os03g48000.1				GO:0015095 - magnesium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane		
14378	_	OsMRS2-7	_	MRS2/MGT family member 7			3	Q10D38.	 Biochemical character	Os03g0742400	LOC_Os03g53110.1				GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity		
14379	_	OsMRS2-8	_	MRS2/MGT family member 8			4	Q7XQQ1.	 Biochemical character	Os04g0430900	LOC_Os04g35160.1				GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity		
14380	_	OsMRS2-9	_	MRS2/MGT family member 9			4	Q0JBZ6.	 Biochemical character	Os04g0501100	LOC_Os04g42280.1				GO:0015095 - magnesium ion transmembrane transporter activity, GO:0016021 - integral to membrane		
14381	RDR5	OsRDR5	RNA-DEPENDENT RNA POLYMERASE 5	RNA-dependent RNA polymerase 5	RNA-DEPENDENT RNA POLYMERASE 5				 Biochemical character								
14382	_	OsPRP, OsPRP1, PRP1, OsRePRP1.1, RePRP1.1	_	proline rich protein, repetitive proline rich protein, REPETITIVE PROLINE-RICH PROTEIN 1.1			5	AF337054. GO:2001085: arabinogalactan binding.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os05g0226900	LOC_Os05g13900.1				GO:0009415 - response to water, GO:0048364 - root development, GO:0030247 - polysaccharide binding, GO:0009738 - abscisic acid mediated signaling, GO:0051511 - negative regulation of unidimensional cell growth, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0002649 - pesticide sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000306 - root thickness, TO:0000615 - abscisic acid sensitivity, TO:0000286 - submergence sensitivity, TO:0000227 - root length, TO:0000172 - jasmonic acid sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage , PO:0009005 - root , PO:0009049 - inflorescence 
14383	_	RPG43	_				5	a gene related to rice photoperiod sensitive genic male sterility. AF126027.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000009 - genic male sterility-photoperiod sensitive	
14384	_	Osr1A	_	disease resistance gene homologue 1A			12	AF059754.							GO:0043531 - ADP binding		
14385	_	Osr1B	_	disease resistance gene homologue 1B			12	AF059754.							GO:0043531 - ADP binding		
14386	_	Osr2	_	disease resistance gene homologue 2			12	AF067192.							GO:0043531 - ADP binding		
14387	_	Osr3	_	disease resistance gene homologue 3			12	AF067193.							GO:0043531 - ADP binding		
14388	_	OsZFP1, SRZ3	_	zinc finger protein 1, stress repressive zinc finger protein 3			6	AF171223.	 Tolerance and resistance - Stress tolerance	Os06g0141200	LOC_Os06g04920.2, LOC_Os06g04920.1				GO:0008270 - zinc ion binding		
14389	_	RGA1	_	Resistance gene analogue 1			11	AF074886.							GO:0043531 - ADP binding		
14390	_	RGA2	_	Resistance gene analogue 2			6	AF074887.									
14391	_	RGA7	_	Resistance gene analogue 7			4	AF074888.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
14392	_	RGA8	_	Resistance gene analogue 8			11	AF074889.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
14393	_	RGA12	_	Resistance gene analogue 12			5	AF074890.									
14394	_	RGA15	_	Resistance gene analogue 15			11	AF074891.									
14395	_	RGA16	_	Resistance gene analogue 16			11	AF074892.									
14396	_	RGA29	_	Resistance gene analogue 29			2	AF074893.									
14397	_	RGA33	_	Resistance gene analogue 33			3	AF074894.							GO:0043531 - ADP binding		
14398	_	RGA38	_	Resistance gene analogue 38			11	AF074895.									
14399	_	RGA40	_	Resistance gene analogue 40			4	AF074896.									
14400	_	RGA42	_	Resistance gene analogue 42			11	AF074897.									
14401	_	RGA47	_	Resistance gene analogue 47			11	AF074898.									
14402	_	RGA59	_	Resistance gene analogue 59			11	AF074899.									
14403	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA			2	M16845. X54194.									
14404	5.8S rRNA	5.8S rRNA	5.8S RIBOSOMAL RNA	5.8S RIBOSOMAL RNA			2	M16845. M35384.									
14405	_	Osh359-1	_					R disease resistance gene. Y09807.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
14406	_	Osh359-2	_				11	R disease resistance gene. Y09808. AF392808, AF392820, AF392821, AF392823, AF392853, AF392861.	 Tolerance and resistance - Disease resistance	Os11g0676050	LOC_Os11g45060.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14407	_	Osh359-3, Osh359-5	_				11	R disease resistance gene. Y09809, Y09810.		Os11g0623800	LOC_Os11g40780.1				GO:0043531 - ADP binding		
14408	_	Os8558-3, Os8558-8	_					R disease resistance gene. Y09812.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
14409	_	Os8558-12	_				3	R disease resistance gene. Y09811.							GO:0043531 - ADP binding		
14410	_	OsGLN1	_	endo-1, 3-beta-glucanase 1			1	AF337174.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0946700	LOC_Os01g71830.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
14411	_	Fd, OsFd4, Fd4	_	ferredoxin, Ferredoxin B1, ferredoxin 4			5	D30794, D83660. D15551. LOC_Os05g37140. OsFd4 in Li et al. 2015. 	 Biochemical character	Os05g0443500	LOC_Os05g37140.2, LOC_Os05g37140.1				GO:0046872 - metal ion binding, GO:0022900 - electron transport chain, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009055 - electron carrier activity		
14412	_	OsDPK1, DPK1, MKKK32, OsMKKK32, MAPKKK32	_	dual-specificity protein kinase 1			8	AY156510.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0224100	LOC_Os08g12750.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14413	_	OsDPK2, stk	_	dual-specificity protein kinase 2, kinase-related transforming protein			2	AY156512. D15597. stk in Sasaki et al. 1994.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0174200	LOC_Os02g07790.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
14414	_	OsDPK3	_	dual-specificity protein kinase 3			6	AY206984.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0663400	LOC_Os06g45300.2, LOC_Os06g45300.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
14415	_	OsDPK4	_	dual-specificity protein kinase 4			4	AY156511.		Os04g0608900	LOC_Os04g51950.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14416	_		_	ribosomal RNA			2	M37173.									
14417	_	OsSIN	_	SHORT INTERNODES			3	AF545810.	 Vegetative organ - Culm								
14418	PSK2	OsPSK2	PHYTOSULFOKINE 2	phytosulfokine 2	PHYTOSULFOKINE 2		11	AJ276692, C73667, D41594. sulfated peptide growth factor precursor. A2ZBG5, Q0IUL4.		Os11g0149400	LOC_Os11g05190.1				GO:0030154 - cell differentiation, GO:0007275 - multicellular organismal development, GO:0005576 - extracellular region, GO:0008283 - cell proliferation		
14419	PSK3	OsPSK3, GREP2, OMT9	PHYTOSULFOKINE 3	phytosulfokine 3, Oryza miR164-targeted gene 9	PHYTOSULFOKINE 3		12	AF068333, D48790. sulfated peptide growth factor precursor. O81277.		Os12g0147800	LOC_Os12g05260.1				GO:0005576 - extracellular region, GO:0007275 - multicellular organismal development, GO:0008283 - cell proliferation, GO:0030154 - cell differentiation		
14420	PSK4	OsPSK4, Psk4	PHYTOSULFOKINE 4	phytosulfokine 4	PHYTOSULFOKINE 4		7	AJ276693, AU68854, AU068855. sulfated peptide growth factor precursor. Q9AR88. D15509.		Os07g0124100	LOC_Os07g03200.1				GO:0030154 - cell differentiation, GO:0007275 - multicellular organismal development, GO:0005576 - extracellular region, GO:0008283 - cell proliferation		
14421	PSK5	OsPSK5	PHYTOSULFOKINE 5	phytosulfokine 5	PHYTOSULFOKINE 5		3	sulfated peptide growth factor precursor. Q9FRF9.		Os03g0675600	LOC_Os03g47230.1				GO:0008283 - cell proliferation, GO:0005576 - extracellular region, GO:0030154 - cell differentiation, GO:0007275 - multicellular organismal development		
14422	_		_	5S ribosomal RNA, 5S rRNA				M18170.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
14424	_		_	5S ribosomal RNA, 5S rRNA				M18203.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
14425	_	cob-2	_	apocytochrome b pseudogene			Mt	X533699.									
14426	_	Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26	_	16 kDa major rice prolamin, endosperm-specific gene 94, Prolamin 26			7	X60979. EF122450. AB016503. AU094552. LOC_Os07g10580 (Yoon et al. 2012). a cysteine-rich 13 kDa prolamin in Saito et al. 2012. PROLM26 in Huang et al. 2016, Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0206500	LOC_Os07g10580.1				GO:0005783 - endoplasmic reticulum, GO:0045735 - nutrient reservoir activity, GO:0042735 - protein body		PO:0009089 - endosperm 
14427	EEF1B'	eEF-1beta', EF-1beta'	EUKARYOTIC ELONGATION FACTOR 1-BETA'	elongation factor 1 beta'	EUKARYOTIC ELONGATION FACTOR 1-BETA'		7	D12821. P29545.	 Biochemical character	Os07g0662500	LOC_Os07g46750.1				GO:0005853 - eukaryotic translation elongation factor 1 complex, GO:0003746 - translation elongation factor activity		
14428	_	HRGP	_	hydroxyproline-rich glycoprotein			4	X61280.									
14429	_	Osgrp-1	_	glycine-rich protein 1			12	a glycine-rich cell wall protein. X53596. A2ZJC9, A3CG83. LOC_Os12g13840. Os12g0241300 (in Rap3 (build5)).			LOC_Os12g13840				GO:0005618 - cell wall, GO:0005576 - extracellular region		
14430	_	GOS9	_				6	a root-specific rice gene. X51909. A2WMH2, P0C5C6.		Os06g0169100	LOC_Os06g07260.1						
14431	_	GRP, Osgrp-2, OsGRP-2, GRCWP	_	glycine-rich protein, Glycine-rich protein 2, glycine-rich cell wall protein			10	a virus-inducible, glycine-rich protein. X54449. U40708. BF889438. P0C5C7, A3C5A7.	 Tolerance and resistance - Disease resistance	Os10g0450900	LOC_Os10g31330.6, LOC_Os10g31330.5, LOC_Os10g31330.3, LOC_Os10g31330.2, LOC_Os10g31330.1				GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0005618 - cell wall, GO:0005576 - extracellular region	TO:0000074 - blast disease, TO:0000148 - viral disease resistance	
14432	_	OsIRL1	_	intracellular Ras-group-related LRR protein 1			4	Q7XNY1.		Os04g0605300	LOC_Os04g51580.2, LOC_Os04g51580.1						
14433	_	OsIRL2	_	intracellular Ras-group-related LRR protein 2			2	Q6ZH85.		Os02g0593600	LOC_Os02g38040.1						
14434	_	OsIRL3, IRL3	_	intracellular Ras-group-related LRR protein 3			4	Q7XK44. LOC_Os04g40080. GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os04g0476700	LOC_Os04g40080.1				GO:0010043 - response to zinc ion	TO:0000351 - zinc sensitivity	
14435	_	OsIRL5	_	intracellular Ras-group-related LRR protein 5			10	Q8S7M7.		Os10g0572300	LOC_Os10g42190.2, LOC_Os10g42190.1				GO:0009416 - response to light stimulus		
14437	_	OsIRL7	_	intracellular Ras-group-related LRR protein 7			3	B9F655.		Os03g0212200	LOC_Os03g11360.3, LOC_Os03g11360.2, LOC_Os03g11360.1						
14438	_	OsIRL8	_	intracellular Ras-group-related LRR protein 8			10	Q7XDQ7.		Os10g0456200	LOC_Os10g31790.2, LOC_Os10g31790.1						
14439	_	RAc2	_	Actin 2, Actin1			10	P0C539, A3C6D7. X15864. D15628. Actin1 in Sasaki et al. 1994.		Os10g0510000	LOC_Os10g36650.1				GO:0005737 - cytoplasm, GO:0005856 - cytoskeleton, GO:0005524 - ATP binding		
14440	_	RAc3	_	Actin 3			3	A2XNS1, Q10AZ4. X15862.		Os03g0836000	LOC_Os03g61970.1				GO:0005524 - ATP binding, GO:0005856 - cytoskeleton, GO:0005737 - cytoplasm		
14441	_	RAc7	_	Actin 7			1	P0C542, P0C540. X15863.		Os01g0866100	LOC_Os01g64630.4, LOC_Os01g64630.2, LOC_Os01g64630.1				GO:0005856 - cytoskeleton, GO:0005524 - ATP binding, GO:0005737 - cytoplasm		
14442	_	cyc07, T151	_				3	D26060. P49397.	 Tolerance and resistance - Stress tolerance	Os03g0200500	LOC_Os03g10340.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0022627 - cytosolic small ribosomal subunit		
14443	HSP82A	OsHSP82A, hsp82A, HSP90, OsHSP81, HSP81	HEAT SHOCK PROTEIN 82A	Heat shock protein 82A	HEAT SHOCK PROTEIN 82A		8	LOC_Os08g39140. Z11920. A2YWQ1, Q0J4P2. HSP90 in Gho et al. 2017. OsHSP81 in Lin et al. 2018. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0500700	LOC_Os08g39140.4, LOC_Os08g39140.3, LOC_Os08g39140.2, LOC_Os08g39140.1				GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0009607 - response to biotic stimulus, GO:0006457 - protein folding, GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0052543 - callose deposition in cell wall	TO:0000074 - blast disease	
14444	HSP82D	OsHSP82D, hsp82D	HEAT SHOCK PROTEIN 82D	Heat shock protein 82D	HEAT SHOCK PROTEIN 82D			Z15024.	 Tolerance and resistance - Stress tolerance						GO:0006950 - response to stress, GO:0006457 - protein folding, GO:0005524 - ATP binding		
14445	HSP82C	OsHSP82C, hsp82C	HEAT SHOCK PROTEIN 82C	Heat shock protein 82C	HEAT SHOCK PROTEIN 82C				 Tolerance and resistance - Stress tolerance								
14446	_	HSP70, hsp70	_	HEAT SHOCK PROTEIN 70KD					 Tolerance and resistance - Stress tolerance								
14447	_	ORF79, orf79	_				Mt	D14339. KC188737, KC188738. AP011077 (Indica Group mitochondrial DNA, complete genome).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion		
14448	_	HMGR I, Hmg1, HMGR1, HMGR 1, OsHMGR1	_	3-hydroxy-3-methylglutaryl coenzyme A reductase I, 3-hydroxy-3-methylglutaryl-CoA reductase 1			2	L28995. A2X8W3, Q0DY59.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0713900	LOC_Os02g48330.1				GO:0005789 - endoplasmic reticulum membrane, GO:0050661 - NADP or NADPH binding, GO:0016021 - integral to membrane, GO:0015936 - coenzyme A metabolic process, GO:0008299 - isoprenoid biosynthetic process, GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity	TO:0000074 - blast disease, TO:0000674 - phytochemical compound content	
14449	_		_	Aldolase			1	D10419.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0118000	LOC_Os01g02880.1				GO:0004332 - fructose-bisphosphate aldolase activity, GO:0006096 - glycolysis		
14450	_	OsGapC1	_	glyceraldehydephosphate dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, cytosolic GAPDH1, cytosolic glyceraldehyde-3-phosphate dehydrogenase 1			2	D10409. Q6K5G8. D15096.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0601300	LOC_Os02g38920.1				GO:0051287 - NAD or NADH binding, GO:0050661 - NADP or NADPH binding, GO:0006096 - glycolysis, GO:0005737 - cytoplasm, GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity		
14451	PGK4	PGK, OsPGK4	PHOSPHOGLYCERATE KINASE 4	"phosphoglycerate kinase, \"phosphoglycerate kinase, cytosolic\", Phosphoglycerate kinase 4, Phosphoglycerate kinase-4"	PHOSPHOGLYCERATE KINASE 4		6	D10408. D23092. LOC_Os06g45710. OsPGK4 in Joshi et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0668200	LOC_Os06g45710.1				GO:0004618 - phosphoglycerate kinase activity, GO:0006096 - glycolysis, GO:0009408 - response to heat, GO:0005737 - cytoplasm	TO:0000432 - temperature response trait	
14452	_		_	elongation factor 2			2	LOC_Os02g32030.1. D21278. enolase in Umeda et al. 1994.	 Tolerance and resistance - Stress tolerance	Os02g0519900	LOC_Os02g32030.1				GO:0003924 - GTPase activity, GO:0003746 - translation elongation factor activity, GO:0005525 - GTP binding, GO:0006184 - GTP catabolic process		
14453	_		_	pyruvate kinase			4	D17768. D22530.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0677500	LOC_Os04g58110.1				GO:0000287 - magnesium ion binding, GO:0004743 - pyruvate kinase activity, GO:0030955 - potassium ion binding, GO:0006096 - glycolysis		
14454	_		_	dihydrolipoamide acetyltransferase				D10961.	 Biochemical character,  Tolerance and resistance - Stress tolerance								
14455	_		_	isocitrate dehydrogenase, isocitrate dehydrogenase (NADP+)			1	LOC_Os01g46610. D21069. D15280. isocitrate dehydrogenase (NADP+) in Sasaki et al. 1994.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0654500	LOC_Os01g46610.1				GO:0000287 - magnesium ion binding, GO:0006102 - isocitrate metabolic process, GO:0004450 - isocitrate dehydrogenase (NADP+) activity, GO:0051287 - NAD or NADH binding, GO:0006099 - tricarboxylic acid cycle		
14456	_		_	succinyl-CoA synthetase				D10415.	 Biochemical character,  Tolerance and resistance - Stress tolerance								
14457	_		_	succinate dehydrogenase (flavoprotein subunit)				D17769.	 Biochemical character,  Tolerance and resistance - Stress tolerance								
14458	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA				D17770.	 Tolerance and resistance - Stress tolerance								
14459	_		_	cytochrome b5, cytochrome b-5			5	X75670. P49100. D29702.	 Biochemical character	Os05g0108800	LOC_Os05g01820.1				GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0055114 - oxidation reduction, GO:0005789 - endoplasmic reticulum membrane, GO:0046872 - metal ion binding		
14460	RPL5	rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p	RIBOSOMAL PROTEIN L5	ribosomal protein L5, Ribosomal protein L5a, Ribosomal protein L5b	RIBOSOMAL PROTEIN L5		1	LOC_Os01g67134.1 X64622. A2WXX3, Q0JGY1. D15270, D15082. a ribosomal 5S rRNA-binding protein. Ribosomal protein L5a and Ribosomal protein L5b in Sasaki et al. 1994. RPL18p/L5e in Moin et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0896800	LOC_Os01g67134.1				GO:0005840 - ribosome, GO:0042742 - defense response to bacterium, GO:0022625 - cytosolic large ribosomal subunit, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0000027 - ribosomal large subunit assembly, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0008097 - 5S rRNA binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat	TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	PO:0020032 - plumule , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009009 - plant embryo , PO:0009089 - endosperm 
14461	_	psaI, ORF36	_	photosystem I subunit VIII			Pt	X15901: CAA33957 (Japonica group plastid genome). P12186. LOC_Osp1g00450. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00450				GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009522 - photosystem I		
14462	RPL23.P	rpl23.p	RIBOSOMAL PROTEIN L23 PSEUDOGENE	ribosomal protein L23 pseudogene, rpl23 pseudogene			Pt	X15901 (Japonica group plastid genome). 									
14463	EEF1B	eEF-1beta, EF-1beta	EUKARYOTIC ELONGATION FACTOR 1-BETA	elongation factor 1 beta, elongation factor 1-beta	EUKARYOTIC ELONGATION FACTOR 1-BETA		7	D23674. Q40680. D16057.	 Biochemical character	Os07g0614500	LOC_Os07g42300.1				GO:0003746 - translation elongation factor activity, GO:0005853 - eukaryotic translation elongation factor 1 complex		
14464	LIR1	Lir1, OsLIR1, Os-LIR1	LIGHT-REGULATED GENE 1	light-regulated gene 1, LIGHT-INDUCED RICE1, LIGHT-INDUCED RICE 1		Os-lir1, lir1, lir1-1, lir1-2, lir1-3	1	X68807. Q03200. LOC_Os01g01340.	 Tolerance and resistance - Stress tolerance	Os01g0102900	LOC_Os01g01340.2, LOC_Os01g01340.1				GO:0009535 - chloroplast thylakoid membrane, GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0009767 - photosynthetic electron transport chain	TO:0000075 - light sensitivity	
14465	_	UBC, OsUBC	_	Ubiquitin conjugating enzyme				U15971.	 Biochemical character						GO:0016881 - acid-amino acid ligase activity		
14466	RPOB	rpoB	RNA POLYMERASE SUBUNIT B	RNA polymerase beta chain	RNA POLYMERASE SUBUNIT B		Mt	D13109 (a transferred chloroplast DNA sequence), X93217 (mitochondrial rpoB pseudogene).	 Biochemical character								
14467	_	OVP1	_	vacuolar H+-pyrophosphatase 1, V-PPase 1, class I V-PPase, vacuolar H-translocating inorganic pyrophosphatase 1			6	D45383. AB012765. LOC_Os06g43660.	 Biochemical character	Os06g0644200	LOC_Os06g43660.3, LOC_Os06g43660.2, LOC_Os06g43660.1				GO:0016020 - membrane, GO:0009678 - hydrogen-translocating pyrophosphatase activity, GO:0004427 - inorganic diphosphatase activity, GO:0015992 - proton transport		
14468	_	OVP2	_	vacuolar H+-pyrophosphatase 2, V-PPase 2, class II V-PPase			6	D45384.	 Biochemical character	Os06g0178900	LOC_Os06g08080.1				GO:0004427 - inorganic diphosphatase activity, GO:0009678 - hydrogen-translocating pyrophosphatase activity, GO:0016020 - membrane, GO:0015992 - proton transport		
14469	_	p26	_	cap-binding protein p26			1	U34597. P48599.	 Other	Os01g0970400	LOC_Os01g73880.1				GO:0005737 - cytoplasm, GO:0006417 - regulation of translation, GO:0003743 - translation initiation factor activity		
14470	_	p28	_	cap-binding protein p28			10	U34598. P48600.	 Other	Os10g0467600	LOC_Os10g32970.1				GO:0005737 - cytoplasm, GO:0003743 - translation initiation factor activity, GO:0006417 - regulation of translation		
14471	_	PG5b, Prol-08, pro13b.14	_		_		5	a 13kDa prolamin. D73384. S72972 (partial). LOC_Os05g26440 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0329400	LOC_Os05g26440.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
14472	_	RAG2, RA14B, RA14, OsEnS-98	_	rice allergen 14B, endosperm-specific gene 98	_		7	rice seed allergenic protein (RA). D11434. D42139. Q01882. LOC_Os07g11380. a 16-kDa a-amylase/trypsin inhibitor.	 Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os07g0214300	LOC_Os07g11380.2, LOC_Os07g11380.1				GO:0010431 - seed maturation, GO:0009651 - response to salt stress, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005615 - extracellular space, GO:0016068 - type I hypersensitivity, GO:0010951 - negative regulation of endopeptidase activity	TO:0006001 - salt tolerance, TO:0000396 - grain yield, TO:0000162 - seed quality, TO:0000602 - total fat content, TO:0000598 - protein content, TO:0000653 - seed development trait, TO:0000382 - 1000-seed weight, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000196 - amylose content, TO:0000696 - starch content	PO:0007632 - seed maturation stage 
14473	_	SRP19	_	signal recognition particle 19			6	U19030. P49964.	 Other	Os06g0342100	LOC_Os06g23430.2, LOC_Os06g23430.1				GO:0006614 - SRP-dependent cotranslational protein targeting to membrane, GO:0005786 - signal recognition particle, endoplasmic reticulum targeting, GO:0008312 - 7S RNA binding		
14474	_	b21	_	lipid transfer protein b21				X83433.  a class III LTP (Vignols et al. 1997).									
14475	EIF4A1	eIF-4a, EIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4	EUKARYOTIC INITIATION FACTOR 4A-1	EUKARYOTIC INITIATION FACTOR 4A, eukaryotic initiation factor 4A-1, initiation factor eIF-4A, initiation factor eIF-4AII, RNA helicase 4	EUKARYOTIC INITIATION FACTOR 4A-1		6	D12627. D10398 (partial cds). P35683. AB046416. D16090. D29715. initiation factor eIF-4AII in Sasaki et al. 1994. LOC_Os06g48750. DEAD-box RNA helicase protein.		Os06g0701100	LOC_Os06g48750.3, LOC_Os06g48750.2, LOC_Os06g48750.1				GO:0008026 - ATP-dependent helicase activity, GO:0003743 - translation initiation factor activity, GO:0005524 - ATP binding		
14476	_	OSPOLA, Ospolalpha	_	DNA polymerase alpha catalytic subunit, catalytic subunit of DNA polymerase alpha			1	AB004461. O48653.	 Biochemical character	Os01g0868300	LOC_Os01g64820.1				GO:0001882 - nucleoside binding, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003896 - DNA primase activity, GO:0046872 - metal ion binding, GO:0006273 - lagging strand elongation, GO:0006270 - DNA replication initiation, GO:0003887 - DNA-directed DNA polymerase activity, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0000166 - nucleotide binding		
14477	_		_	reverse transcriptase				Y13370.	 Other						GO:0006278 - RNA-dependent DNA replication, GO:0003723 - RNA binding, GO:0003964 - RNA-directed DNA polymerase activity		
14478	_		_	reverse transcriptase				Y13371.	 Other								
14479	IMPA2		IMPORTIN ALPHA 2	importin alpha			1	AB006788, D78504. Q9FYP9.		Os01g0158000	LOC_Os01g06470.1				GO:0006606 - protein import into nucleus, GO:0005634 - nucleus, GO:0008565 - protein transporter activity, GO:0048471 - perinuclear region of cytoplasm		
14480	ENOD93A	OsENOD93a	EARLY NODULIN 93A	early nodulin 93A	EARLY NODULIN 93A		6	AB018376, AB018375. LOC_Os06g04990.		Os06g0142200 	LOC_Os06g04990.1				GO:0005739 - mitochondrion		
14481	ENOD93B	OsENOD93b	EARLY NODULIN 93B	early nodulin 93b	EARLY NODULIN 93B		2	AB018377. D15436. acyl-[acyl-carrier-protein] desaturase. 		Os02g0227200	LOC_Os02g13380.1						
14482	WGL2	rps9, OsRPS9, OsWGL2	WHITE GREEN LEAF 2	ribosomal protein S9, chloroplast ribosomal protein S9, plastid ribosomal protein S9, white green leaf 2	RIBOSOMAL PROTEIN S9	wgl2	3	LOC_Os03g55930. AB022675.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Other	Os03g0769100 	LOC_Os03g55930.1				GO:0005840 - ribosome, GO:0009658 - chloroplast organization, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast, GO:0006412 - translation	TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0000298 - chlorophyll ratio	PO:0025034 - leaf 
14483	_	PDK1, OsPdk1, Pdk1	_	3-phosphoinositide-dependent protein kinase-1, 3-phosphoinositide-dependent protein kinase 1		ospdk1	1	AF132743.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0872800	LOC_Os01g65230.1				GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0002238 - response to molecule of fungal origin	TO:0000074 - blast disease	
14484	LAC4	Oslacc, lacc, OsLAC4	LACCASE 4	lactase, laccase 4	LACCASE 4		1	AF047697. Q5N9X2. LOC_Os01g62480. laccase-like multicopper oxidase. LMCO. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os01g0842400	LOC_Os01g62480.1				GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0046274 - lignin catabolic process		
14485	_	aie1a	_	anaerobically inducible early gene 1a				AF014931.	 Tolerance and resistance - Stress tolerance								
14486	_	aie1b	_	anaerobically inducible early gene 1b				AF014932.	 Tolerance and resistance - Stress tolerance								
14487	_	aie2	_	anaerobically inducible early gene 2				AF014930.	 Tolerance and resistance - Stress tolerance								
14488	_	Tourist-OsaCatA	_	Tourist element			2	AB018051-AB018073 (O. sativa and other wild rice species). Tourist elements are found in CatA(D29966), Xa21(U72724), LRK2(X89226), Gns9(U72255) etc.	 Other						GO:0032196 - transposition		
14489	_	PLA2-I	_	phospholipase A2-I			2	a low-molecular-weight calcium-dependent phospholipase A2. AJ238116. Q9XG80. D49050.	 Biochemical character	Os02g0831700	LOC_Os02g58500.1				GO:0016042 - lipid catabolic process, GO:0006644 - phospholipid metabolic process, GO:0005576 - extracellular region, GO:0004623 - phospholipase A2 activity, GO:0005509 - calcium ion binding		
14490	_	PLA2-II	_	phospholipase A2-II			3	a low-molecular-weight calcium-dependent phospholipase A2. AJ238117. Q9XG81. D47320, D47653, D47724.	 Biochemical character	Os03g0261100	LOC_Os03g15460.1				GO:0005509 - calcium ion binding, GO:0016042 - lipid catabolic process, GO:0006644 - phospholipid metabolic process, GO:0005576 - extracellular region, GO:0008289 - lipid binding, GO:0004623 - phospholipase A2 activity		
14491	_	IF1-1	_	F1F0-ATPase inhibitor protein 1-1			8	AB029059. 	 Biochemical character	Os08g0558900	LOC_Os08g44460.3, LOC_Os08g44460.2, LOC_Os08g44460.1				GO:0005739 - mitochondrion, GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity, GO:0045980 - negative regulation of nucleotide metabolic process		
14492	_	IF1-2	_	F1F0-ATPase inhibitor protein 1-2			9	AB029060. 	 Biochemical character	Os09g0568900	LOC_Os09g39550.1						
14493	_	OSVDAC1, osvdac1, OsVDAC1, VDAC1	_	voltage-dependent anion channel 1, voltage-dependent anion-selective channel 1			9	Y18104. Q6K548. LOC_Os09g19734.	 Biochemical character	Os09g0361400	LOC_Os09g19734.4, LOC_Os09g19734.3, LOC_Os09g19734.2, LOC_Os09g19734.1				GO:0006915 - apoptosis, GO:0008308 - voltage-gated anion channel activity, GO:0046930 - pore complex, GO:0005741 - mitochondrial outer membrane, GO:0015288 - porin activity		
14494	_	OsPAA1, PAA1	_	20S proteasome alpha1 subunit			3	AB026558, D49098. Q9LSU3.	 Biochemical character	Os03g0180400	LOC_Os03g08280.3, LOC_Os03g08280.2, LOC_Os03g08280.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity, GO:0005737 - cytoplasm, GO:0019773 - proteasome core complex, alpha-subunit complex		
14495	TT1	OsPAB1, PAB1, OsTT1	THERMO-TOLERANCE 1	20S proteasome alpha2 subunit, Thermo-tolerance 1			3	AB026559, D40076. Q10KF0. KR054757 (Oryza glaberrima, OgTT1).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0387100	LOC_Os03g26970.1				GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004298 - threonine-type endopeptidase activity, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
14496	_	OsPAC1	_	20S proteasome alpha3 subunit			6	AB026560, D41015. P0C1G8.	 Biochemical character	Os06g0176000	LOC_Os06g07878.1				GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity		
14497	_	OsPAD1	_	20S proteasome alpha4 subunit			9	AB032061, C74810. Q0J006.	 Biochemical character	Os09g0538200	LOC_Os09g36710.1				GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004298 - threonine-type endopeptidase activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
14498	_	OsPAE1, PAE1	_	20S proteasome alpha5 subunit, 20S PROTEASOME ALPHA SUBUNIT E1			11	AB026561, D24985. Q9LSU1.	 Biochemical character	Os11g0615700	LOC_Os11g40140.1				GO:0004298 - threonine-type endopeptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0005634 - nucleus		
14499	_	OsPAG1, OsPSA7	_	20S proteasome alpha7 subunit, 20S proteasome subunit alpha7			1	AB026562, D40644. Q9LSU0.	 Biochemical character	Os01g0811100	LOC_Os01g59600.2, LOC_Os01g59600.1				GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process		
14500	_	OsPBA1	_	20S proteasome beta1 subunit			2	AB026563, D41150.	 Biochemical character	Os02g0770000 	LOC_Os02g53060.2, LOC_Os02g53060.1				GO:0005839 - proteasome core complex, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process		
14501	_	OsPBB1, PUP1	_	20S proteasome beta2 subunit, proteasome component PUP1			5	AB026564, D15408.	 Biochemical character	Os05g0187000 	LOC_Os05g09490.2, LOC_Os05g09490.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005839 - proteasome core complex, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity		
14502	_	OsPBC1	_	20S proteasome beta3 subunit			6	AB026565, AA752242. Q9LST7.	 Biochemical character	Os06g0643100	LOC_Os06g43570.1				GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity, GO:0005839 - proteasome core complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm		
14503	_	OsPBD1	_	20S proteasome beta4 subunit			3	AB026566, D24758. Q9LST6.	 Biochemical character	Os03g0695600	LOC_Os03g48930.1				GO:0005839 - proteasome core complex, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process		
14504	_	OsPBE1	_	20S proteasome beta5 subunit			6	AB026567, D48392. D15525.	 Biochemical character	Os06g0153800	LOC_Os06g06030.1				GO:0004298 - threonine-type endopeptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005839 - proteasome core complex, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
14505	_	OsPBG1	_	20S proteasome beta7 subunit			9	AB026568, D15785. 	 Biochemical character	Os09g0515200 	LOC_Os09g33986.2, LOC_Os09g33986.1				GO:0004298 - threonine-type endopeptidase activity, GO:0005839 - proteasome core complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
14506	MST1	OsMST1	MONOSACCHARIDE TRANSPORTER 1	monosaccharide transporter 1	MONOSACCHARIDE TRANSPORTER 1		4	D25142, AB052883.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0452700	LOC_Os04g37980.1				GO:0009555 - pollen development, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0016021 - integral to membrane	TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
14507	MST2	OsMST2	MONOSACCHARIDE TRANSPORTER 2	monosaccharide transporter 2	MONOSACCHARIDE TRANSPORTER 2		3	D46606, AB052884.	 Biochemical character	Os03g0594400	LOC_Os03g39710.1				GO:0022891 - substrate-specific transmembrane transporter activity, GO:0016021 - integral to membrane		
14508	MST3	OsMST3	MONOSACCHARIDE TRANSPORTER 3	monosaccharide transporter 3	MONOSACCHARIDE TRANSPORTER 3		7	D40232, AB052885.	 Biochemical character	Os07g0106200	LOC_Os07g01560.2, LOC_Os07g01560.1				GO:0016021 - integral to membrane, GO:0022891 - substrate-specific transmembrane transporter activity		
14509	PP2A-A	PP2A-A, RPA1	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A	protein phosphatase 2A A subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A		9	AJ243828, AJ243829, D21972. LOC_Os09g07510. HEAT repeat family protein. a putative meiosis-related gene.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os09g0249700	LOC_Os09g07510.3, LOC_Os09g07510.2, LOC_Os09g07510.1				GO:0007126 - meiosis		
14510	_		_	vacuolar H+-ATPase B subunit pseudogene, V-ATPase B pseudogene	_		5	AB055105. AM179944-AM179987 (O. sativa and O. rufipogon).									
14511	_	Rp120, OsTSN, TSN	_	cytoskeleton-associated 120 kDa RNA-binding protein, OsTudor-SN, Tudor-SN			2	AY320036. 	 Biochemical character	Os02g0523500	LOC_Os02g32350.2, LOC_Os02g32350.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0004518 - nuclease activity, GO:0003723 - RNA binding, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016442 - RNA-induced silencing complex, GO:0008298 - intracellular mRNA localization, GO:0031047 - gene silencing by RNA, GO:0006401 - RNA catabolic process		
14512	_	OsUCP1	_	uncoupling protein 1				AB049997.	 Tolerance and resistance - Stress tolerance						GO:0016021 - integral to membrane, GO:0031966 - mitochondrial membrane, GO:0006839 - mitochondrial transport		
14513	_	OsUCP2	_	uncoupling protein 2			11	AB049998.	 Tolerance and resistance - Stress tolerance	Os11g0707800	LOC_Os11g48040.1				GO:0006839 - mitochondrial transport, GO:0016021 - integral to membrane, GO:0031966 - mitochondrial membrane		
14514	_	U14.1	_	box C/D snoRNA U14.1, U14.1 box C/D snoRNA, U14.1 snoRNA			2	AF332622.									
14515	_	U14.2	_	box C/D snoRNA U14.2, U14.2 box C/D snoRNA, U14.2 snoRNA			2	AF332622.									
14516	POLD1	OsPoldelta1, OspolD1	POLYMERASE (DNA DIRECTED), DELTA 1	pol delta catalytic subunit, DNA polymerase delta 1, OsPol delta large subunit	POLYMERASE (DNA DIRECTED), DELTA 1		11	AB037899. Q9LRE6.	 Biochemical character	Os11g0186400	LOC_Os11g08330.1				GO:0043137 - DNA replication, removal of RNA primer, GO:0006287 - base-excision repair, gap-filling, GO:0006297 - nucleotide-excision repair, DNA gap filling, GO:0000166 - nucleotide binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0043625 - delta DNA polymerase complex, GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0003887 - DNA-directed DNA polymerase activity, GO:0007346 - regulation of mitotic cell cycle, GO:0008408 - 3'-5' exonuclease activity, GO:0045004 - DNA replication proofreading		
14517	POLD2	OsPoldelta2, OspolD2	POLYMERASE (DNA DIRECTED), DELTA 2	pol delta small subunit, DNA polymerase delta 2, OsPol delta small subunit	POLYMERASE (DNA DIRECTED), DELTA 2		3	AB037900, D24468. Q9LRE5.	 Biochemical character	Os03g0128500	LOC_Os03g03650.1				GO:0005634 - nucleus, GO:0003887 - DNA-directed DNA polymerase activity, GO:0006260 - DNA replication, GO:0003677 - DNA binding		
14518	_	IRL	_	isoflavone reductase-like protein			1	AP002863.	 Tolerance and resistance - Stress tolerance								
14519	_	Snf2P, OsSnf2P	_	SNF2 family protein			3	AF459086, AF459087. AU100698, C26323.	 Other	Os03g0101700	LOC_Os03g01200.1				GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0003677 - DNA binding		
14520	_	OsFKI, OsFK2	_	fructokinase I, Fructokinase 2			1	AF429948. A2WXV8, Q0JGZ6. OsFK2 in Guglielminetti et al. 2006 and Guglielminetti et al. 2014.	 Biochemical character,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os01g0894300	LOC_Os01g66940.1				GO:0019252 - starch biosynthetic process, GO:0034059 - response to anoxia, GO:0045471 - response to ethanol, GO:0004747 - ribokinase activity, GO:0005524 - ATP binding, GO:0006014 - D-ribose metabolic process, GO:0008865 - fructokinase activity	TO:0000015 - oxygen sensitivity	
14522	_	OSVDAC2, osvdac2, OsVDAC2, VDAC2	_	voltage-dependent anion channel 2, voltage-dependent anion-selective channel 2			5	AJ251562. Q6L5I5. LOC_Os05g45950.	 Biochemical character	Os05g0536200	LOC_Os05g45950.1				GO:0015288 - porin activity, GO:0046930 - pore complex, GO:0005741 - mitochondrial outer membrane, GO:0006811 - ion transport		
14523	_	OSVDAC3, osvdac3, OsVDAC3, VDAC3	_	voltage-dependent anion channel 3, voltage-dependent anion-selective channel 3			1	AJ251563. Q7F4F8. LOC_Os01g40570.	 Biochemical character	Os01g0588200 	LOC_Os01g40570.1				GO:0015288 - porin activity, GO:0046930 - pore complex, GO:0005741 - mitochondrial outer membrane, GO:0008308 - voltage-gated anion channel activity		
14524	_	OSVDAC4, osvdac4, OsVDAC4, VDAC4	_	voltage-dependent anion channel 4, voltage-dependent anion-selective channel 4			1	Q0JJV1. LOC_Os01g51770.	 Biochemical character	Os01g0715500	LOC_Os01g51770.1				GO:0015288 - porin activity, GO:0046930 - pore complex, GO:0005741 - mitochondrial outer membrane, GO:0006811 - ion transport		
14525	_	HMGB1, OsHMGB1	_	High mobility group protein B1, High mobility group subgroup B protein 1, high mobility group B1			6	AF541859. AY262827. D16074.		Os06g0728000	LOC_Os06g51220.4, LOC_Os06g51220.3, LOC_Os06g51220.2				GO:0003677 - DNA binding, GO:0005634 - nucleus		
14526	_	OsbHLH1, OsbHLH062	_	basic Helix-Loop-Helix protein 1, basic helix-loop-helix protein 062			7	AY222337. AP004260. HQ858856. bHLH transcription factor.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0628500	LOC_Os07g43530.2, LOC_Os07g43530.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	
14527	RML1	rml1, OsRML1, OsMSL21, MSL21	REGULATED BY M. GRISEA AND LIGHT 1	rice gene regulated by M. grisea and light 1, Myb/SANT-LIKE 21			4	AJ535489, AJ535490. AL627350, AL606998.	 Tolerance and resistance - Disease resistance,  Other	Os04g0486400	LOC_Os04g40930.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0043565 - sequence-specific DNA binding		PO:0025034 - leaf , PO:0009047 - stem 
14528	_	Rad6, OsRad6, Dhr6, OsUBC9, UBC9	_	RAD6 DNA-repair homolog Dhr6, Ubiquitin-conjugating enzyme 9			3	a ubiquitin-conjugating enzyme. AB079798. D15767. LOC_Os03g57790.	 Biochemical character	Os03g0791800	LOC_Os03g57790.2, LOC_Os03g57790.1				GO:0016881 - acid-amino acid ligase activity, GO:0048316 - seed development	TO:0000401 - plant growth hormone sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
14529	_	HAZ1	_				6	a PHD-finger family homeobox gene. AB081340, AB081341.	 Seed - Morphological traits - Embryo,  Other	Os06g0229300 	LOC_Os06g12400.1				GO:0003700 - transcription factor activity, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
14530	_	HN1L	_	HN1-like gene, hematopoietic- and neurologic-expressed sequence 1-like gene			4	BK001566.		Os04g0455600	LOC_Os04g38310.3, LOC_Os04g38310.2, LOC_Os04g38310.1						
14531	_	prx1	_	class III peroxidase 1			1	BN000530.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14532	_	prx2	_	class III peroxidase 2			1	BN000531.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0205900	LOC_Os01g10850.1				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004601 - peroxidase activity		
14533	_	prx4	_	class III peroxidase 4			1	BN000533.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0270300	LOC_Os01g16450.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14534	_	prx5	_	class III peroxidase 5			1	BN000534.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0263000	LOC_Os01g15810.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14535	_	prx6	_	class III peroxidase 6			1	BN000535.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14536	_	prx7	_	class III peroxidase 7			7	BN000536.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0157000	LOC_Os07g06300.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0005215 - transporter activity, GO:0046872 - metal ion binding, GO:0016020 - membrane, GO:0020037 - heme binding		
14537	_	prx8	_	class III peroxidase 8			1	BN000537.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0293900	LOC_Os01g18930.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14538	_	prx9	_	class III peroxidase 9			1	BN000538.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0294300	LOC_Os01g18950.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14539	_	prx10	_	class III peroxidase 10			1	BN000539.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity		
14540	_	prx12, PRX12, OsPRX12	_	class III peroxidase 12			1	BN000541.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0326000	LOC_Os01g22230.2, LOC_Os01g22230.1				GO:0050832 - defense response to fungus, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity	TO:0000074 - blast disease	
14541	_	prx14	_	class III peroxidase 14			1	BN000543.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0327000	LOC_Os01g22336.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14542	_	prx15	_	class III peroxidase 15			1	BN000544.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0327100	LOC_Os01g22352.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0009809 - lignin biosynthetic process, GO:0046872 - metal ion binding		
14543	_	prx16, OsPOD1, POD1	_	class III peroxidase 16, Peroxidase 1			1	LOC_Os01g22370. BN000545. POD1 (Peroxidase 1) in Sudo et al. 2008, Yang et al. 2015, Xiong et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0327400	LOC_Os01g22370.1				GO:0006952 - defense response, GO:0046872 - metal ion binding, GO:0046688 - response to copper ion, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity	TO:0000021 - copper sensitivity, TO:0000112 - disease resistance	
14544	_	prx17	_	class III peroxidase 17			1	BN000546.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0543100	LOC_Os01g36240.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14545	_	prx18	_	class III peroxidase 18			1	BN000547.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14546	_	prx19	_	class III peroxidase 19			1	BN000548.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0787000	LOC_Os01g57730.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14547	_	prx20	_	class III peroxidase 20			1	BN000549.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0962700	LOC_Os01g73170.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14548	_	prx21	_	class III peroxidase 21			1	BN000550.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0962900	LOC_Os01g73190.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity		
14549	_	prx22, OsPRX22	_	class III peroxidase 22, peroxidase BP1			1	LOC_Os01g73200. BN000551. peroxidase BP1 in Ma et al. 2013.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0963000	LOC_Os01g73200.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0009723 - response to ethylene stimulus, GO:0009809 - lignin biosynthetic process, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress	TO:0000173 - ethylene sensitivity	
14550	_	prx23	_	class III peroxidase 23			1	BN000552. LOC_Os01g73220. Os01g0963200 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os01g73220				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14551	_	prx24	_	class III peroxidase 24			2	BN000553.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0161800	LOC_Os02g06630.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14552	_	prx25	_	class III peroxidase 25			2	BN000554.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0237000	LOC_Os02g14180.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14553	_	prx26	_	class III peroxidase 26			2	BN000555.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0236800	LOC_Os02g14170.2, LOC_Os02g14170.1				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14554	_	prx27, PRX27, OsPRX27	_	class III peroxidase 27			2	BN000556.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0236600	LOC_Os02g14160.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0050832 - defense response to fungus, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding	TO:0000074 - blast disease	
14555	_	prx28	_	class III peroxidase 28			2	BN000557. LOC_Os02g14460. Os02g0240500 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os02g14460				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14556	_	prx29	_	class III peroxidase 29			2	BN000558.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0240300	LOC_Os02g14440.2, LOC_Os02g14440.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14557	_	prx30	_	class III peroxidase 30			2	BN000559.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0240100	LOC_Os02g14430.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14558	_	prx31	_	class III peroxidase 31			2	BN000560.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0741200	LOC_Os02g50770.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14559	_	prx32	_	class III peroxidase 32			2	BN000561.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0833900	LOC_Os02g58720.3, LOC_Os02g58720.2, LOC_Os02g58720.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14560	_	prx33	_	class III peroxidase 33			3	BN000562. EF444530.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0121200	LOC_Os03g02920.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14561	_	prx34	_	class III peroxidase 34			3	BN000563.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0121300	LOC_Os03g02939.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14562	_	prx35	_	class III peroxidase 35			3	BN000564.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14563	_	prx36	_	class III peroxidase 36			3	BN000565.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0152300	LOC_Os03g05770.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity		
14564	_	prx37	_	class III peroxidase 37			3	BN000566.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0234500	LOC_Os03g13180.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14565	_	prx39	_	class III peroxidase 39			3	BN000568.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0234900	LOC_Os03g13200.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14566	_	prx40	_	class III peroxidase 40			3	BN000569.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0339400	LOC_Os03g22020.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14567	_	prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2	_	class III peroxidase 41, peroxidase 8.1, peroxidase 2			3	LOC_Os03g22010. BN000570. OsPOX8.1 in Hayashi et al.2014. OsPOD2 in Yang et al. 2015, Ye at al. 2018, Xiong et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0339300	LOC_Os03g22010.4, LOC_Os03g22010.3, LOC_Os03g22010.2, LOC_Os03g22010.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0010332 - response to gamma radiation, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14568	_	prx42	_	class III peroxidase 42			3	BN000571.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0368000	LOC_Os03g25280.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14569	_	prx43, OsPRX43	_	class III peroxidase 43			3	BN000572.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0368300	LOC_Os03g25300.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14570	_	prx44	_	class III peroxidase 44			3	BN000573. LOC_Os03g25320.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os03g25320				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14571	_	prx45	_	class III peroxidase 45			3	BN000574.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0368900	LOC_Os03g25330.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14572	_	prx46, POD1, OSPOD1	_	class III peroxidase 46			3	BN000575. POD1 in Jin et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0369000	LOC_Os03g25340.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14573	_	prx47	_	class III peroxidase 47			3	BN000576. LOC_Os03g25360. Os03g0369200 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os03g25360				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14574	_	prx48	_	class III peroxidase 48			3	BN000577. LOC_Os03g25370. Os03g0369400 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0369600	LOC_Os03g25370.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14575	_	prx49	_	class III peroxidase 49			3	BN000578.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0563600	LOC_Os03g36560.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14576	_	prx50	_	class III peroxidase 50			3	BN000579.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0762200					GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14577	_	prx51	_	class III peroxidase 51			3	BN000580.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0762400	LOC_Os03g55420.1				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14578	_	prx52	_	class III peroxidase 52			4	BN000581.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0105800	LOC_Os04g01550.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14579	_	prx54	_	class III peroxidase 54			4	BN000583.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0423800	LOC_Os04g34630.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14580	_	prx55	_	class III peroxidase 55			4	BN000584.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0465100	LOC_Os04g39100.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14581	_	prx56	_	class III peroxidase 56			4	BN000585.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0628200	LOC_Os04g53640.1, LOC_Os04g53630.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14582	_	prx57	_	class III peroxidase 57			4	BN000586.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0651000	LOC_Os04g55740.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14583	_	prx58	_	class III peroxidase 58			4	BN000587.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0656800	LOC_Os04g56180.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14584	_	prx59, OsPRX59	_	class III peroxidase 59			4	BN000588.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0688100	LOC_Os04g59150.2, LOC_Os04g59150.1				GO:0009832 - plant-type cell wall biogenesis, GO:0004601 - peroxidase activity, GO:0052543 - callose deposition in cell wall, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress	TO:0000074 - blast disease	
14585	_	prx60, POX-1	_	class III peroxidase 60, peroxidase 1			4	BN000589. LOC_Os04g59160.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0688200	LOC_Os04g59160.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14586	_	prx61	_	class III peroxidase 61, Peroxidase 2			4	BN000590. Peroxidase 2 in Sudo et al. 2008. LOC_Os04g59190.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0688300	LOC_Os04g59190.1				GO:0046688 - response to copper ion, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006952 - defense response, GO:0046872 - metal ion binding	TO:0000021 - copper sensitivity, TO:0000112 - disease resistance	
14587	_	prx62, OsPRX62	_	class III peroxidase 62			4	BN000591.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0688500	LOC_Os04g59200.1				GO:0046872 - metal ion binding, GO:0009832 - plant-type cell wall biogenesis, GO:0052543 - callose deposition in cell wall, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
14588	_	prx63	_	class III peroxidase 63			4	BN000592.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0688600	LOC_Os04g59210.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14589	_	prx64	_	class III peroxidase 64			4	BN000593.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0689000 	LOC_Os04g59260.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006952 - defense response	TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait	
14590	_	prx65, PRX65, OsPRX65	_	class III peroxidase 65			5	LOC_Os05g04380. BN000594.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0134400	LOC_Os05g04380.2, LOC_Os05g04380.1				GO:0050832 - defense response to fungus, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding	TO:0000074 - blast disease	
14591	_	prx67	_	class III peroxidase 67			5	BN000596.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0134800	LOC_Os05g04440.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14592	_	prx68	_	class III peroxidase 68			5	BN000597. LOC_Os05g04450. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0135000	LOC_Os05g04450.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus		PO:0025025 - root system 
14593	_	prx69	_	class III peroxidase 69			5	LOC_Os05g04470. BN000598.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0135200	LOC_Os05g04470.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14594	_	prx70	_	class III peroxidase 70			5	BN000599.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0135400	LOC_Os05g04490.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14595	_	prx71, Osprx71	_	class III peroxidase 71, Peroxidase 63			5	BN000600. Peroxidase 63 in Sudo et al. 2008. LOC_Os05g04500.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0135500	LOC_Os05g04500.1				GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0006952 - defense response, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress	TO:0000021 - copper sensitivity, TO:0000112 - disease resistance	
14596	_	prx72	_	class III peroxidase 72, Os-peroxidase 1, peroxidase 1			5	LOC_Os05g06970. BN000601. Os-peroxidase 1 in Pan et al. 2017.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0162000	LOC_Os05g06970.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14597	_	prx73	_	class III peroxidase 73			5	BN000602.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0231900	LOC_Os05g14260.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14598	_	prx75	_	class III peroxidase 75			5	BN000604. Haem peroxidase family protein.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0499400	LOC_Os05g42000.2, LOC_Os05g42000.1				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14599	_	prx76	_	class III peroxidase 76			6	BN000605.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0237600	LOC_Os06g13050.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14600	_	prx77	_	class III peroxidase 77			6	BN000606.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0274800	LOC_Os06g16350.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14601	_	prx78, PRX78, OsPRX78	_	class III peroxidase 78			6	BN000607. catalase in Luan and Zhou 2015. an OsPR1b-interacting factor.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0306300	LOC_Os06g20150.1				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus, GO:0020037 - heme binding, GO:0004601 - peroxidase activity	TO:0000074 - blast disease	
14602	_	prx79	_	class III peroxidase 79			6	BN000608.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0472900	LOC_Os06g27850.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14603	_	prx80	_	class III peroxidase 80			6	BN000609.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0490400	LOC_Os06g29470.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14604	_	prx81	_	class III peroxidase 81			6	BN000610.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0522300	LOC_Os06g33100.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14605	_	prx82	_	class III peroxidase 82			6	BN000611.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0521900	LOC_Os06g33080.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14606	_	prx83	_	class III peroxidase 83			6	BN000612.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0521500	LOC_Os06g32990.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0009809 - lignin biosynthetic process		
14607	_	prx84	_	class III peroxidase 84			6	BN000613.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0521400	LOC_Os06g32980.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14608	_	prx85	_	class III peroxidase 85			6	BN000614.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0521200	LOC_Os06g32960.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14609	_	prx86, PRX86, OsPRX86	_	class III peroxidase 86, peroxidase FLXPER4, PER4			6	BN000615. D40265, AU163222. peroxidase FLXPER4 (PER4) in Yamaguchi et al. 2004.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0547400	LOC_Os06g35520.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000432 - temperature response trait	
14610	_	prx87	_	class III peroxidase 87			6	BN000616.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0547100	LOC_Os06g35490.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14611	_	prx88	_	class III peroxidase 88			6	BN000617.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0546500	LOC_Os06g35480.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14612	_	prx89	_	class III peroxidase 89			6	BN000618.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0681600	LOC_Os06g46799.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14613	_	prx90	_	class III peroxidase 90			6	BN000619. EF990900, EF990901.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0695500	LOC_Os06g48030.3, LOC_Os06g48030.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14614	_	prx91	_	class III peroxidase 91			6	BN000620.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0695400	LOC_Os06g48020.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14615	_	prx92	_	class III peroxidase 92			6	BN000621.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0695300	LOC_Os06g48010.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14616	_	prx93	_	class III peroxidase 93			6	BN000622.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0695200	LOC_Os06g48000.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14617	_	prx94	_	class III peroxidase 94			7	BN000623. LOC_Os07g01400. Os07g0104400  (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os07g01400				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14618	_	prx95, OsPRX95	_	class III peroxidase 95			7	BN000624.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0104500	LOC_Os07g01410.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14619	_	prx96	_	class III peroxidase 96			7	BN000625. LOC_Os07g01420. Os07g0104600 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os07g01420				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14620	_	prx97, Osprx97	_	class III peroxidase 97			7	BN000626.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0104100	LOC_Os07g01370.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14621	_	prx98	_	class III peroxidase 98			7	BN000627.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0115300	LOC_Os07g02440.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14622	_	prx99	_	class III peroxidase 99			7	BN000628. LOC_Os07g06175. Os07g0156000  (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0156200	LOC_Os07g06175.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14623	_	prx100, prx101	_	class III peroxidase 100, class III peroxidase 101			7	BN000629, BN000630.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14624	_	prx102	_	class III peroxidase 102			7	BN000631.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0499500	LOC_Os07g31610.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14625	_	prx103	_	class III peroxidase 103			7	BN000632.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14626	_	prx104	_	class III peroxidase 104			7	BN000633.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0531400	LOC_Os07g34710.3, LOC_Os07g34710.2, LOC_Os07g34710.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14627	_	prx105, OsPRX105	_	class III peroxidase 105			7	BN000634. LOC_Os07g44460.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0638600	LOC_Os07g44460.1, LOC_Os07g44480.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14628	_	prx106	_	class III peroxidase 106			7	BN000635. LOC_Os07g44480. Os07g0638800 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0638600	LOC_Os07g44480.1, LOC_Os07g44460.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14629	_	prx107	_	class III peroxidase 107			7	BN000636.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0639000	LOC_Os07g44550.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14630	_	prx108	_	class III peroxidase 108			7	BN000637.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0639400	LOC_Os07g44590.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14631	_	prx109, POX-2	_	class III peroxidase 109, peroxidase 2			7	BN000638. LOC_Os07g47990. peroxidase 2 in Sudo et al. 2008.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0676900	LOC_Os07g47990.2, LOC_Os07g47990.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0006952 - defense response, GO:0046688 - response to copper ion	TO:0000112 - disease resistance, TO:0000021 - copper sensitivity	
14632	_	prx115	_	class III peroxidase 115			7	BN000644.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0677600	LOC_Os07g48060.2, LOC_Os07g48060.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14633	_	prx116	_	class III peroxidase 116			7	BN000645.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0694300	LOC_Os07g49360.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14634	_	prx117	_	class III peroxidase 117, Putative peroxidase 47, Peroxidase 47			8	BN000646. (Putative) peroxidase 47 in Wu et al. 2014 and Sudo et al. 2008. LOC_Os08g02110.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0113000	LOC_Os08g02110.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0046688 - response to copper ion, GO:0006979 - response to oxidative stress	TO:0000074 - blast disease, TO:0000021 - copper sensitivity	
14635	_	prx118	_	class III peroxidase 118			8	BN000647.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0302000	LOC_Os08g20730.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14636	_	prx119	_	class III peroxidase 119			8	BN000648.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14637	_	prx120	_	class III peroxidase 120			9	BN000649.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0323900	LOC_Os09g15510.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14638	_	prx121	_	class III peroxidase 121			9	BN000650.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0323700	LOC_Os09g15500.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14639	_	prx122	_	class III peroxidase 122			9	BN000651.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0471100	LOC_Os09g29490.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14640	_	prx123	_	class III peroxidase 123			9	BN000652.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0507500	LOC_Os09g32964.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14641	_	prx124	_	class III peroxidase 124			10	BN000653.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14642	_	prx125, PRX125, OsPRX125	_	class III peroxidase 125			10	BN000654.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0109300	LOC_Os10g02040.2, LOC_Os10g02040.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0004601 - peroxidase activity, GO:0020037 - heme binding	TO:0000074 - blast disease	
14643	_	prx127	_	class III peroxidase 127			10	BN000656.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0536600	LOC_Os10g39160.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14644	_	prx128	_	class III peroxidase 128			10	LOC_Os10g39170. BN000657.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0536700	LOC_Os10g39170.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
14645	_	prx129	_	class III peroxidase 129			10	BN000658.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0566800	LOC_Os10g41720.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14646	_	prx130	_	class III peroxidase 130			11	LOC_Os11g02130. BN000659.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0112400	LOC_Os11g02130.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14647	_	prx131	_	class III peroxidase 131			11	BN000660.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0112200	LOC_Os11g02100.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
14648	_	prx132, prx133	_	class III peroxidase 132, class III peroxidase 133			11	BN000661, BN000662. FJ266019-FJ266028 (indica and other wild rice species).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0210100	LOC_Os11g10460.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14649	_	prx134	_	class III peroxidase 134			11	BN000663.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0661600	LOC_Os11g43980.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14650	_	prx136	_	class III peroxidase 136			12	BN000665.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14651	_	prx137	_	class III peroxidase 137			12	BN000666.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0191500	LOC_Os12g08920.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14652	_	prx138	_	class III peroxidase 138			12	BN000667.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0530100	LOC_Os12g34524.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14653	SPDS2	OsSPDS2, OsSPMS1, SPMS1	SPERMIDINE SYNTHASE 2	spermidine synthase 2, spermine synthase 1, spermidine/spermine synthase 1	SPERMIDINE SYNTHASE 2	osspms1#1, osspms1#2	6	LOC_Os06g33710. a 42 kD spermidine synthase. AB098063. PO:0030123: panicle inflorescence. GO:2000280: regulation of root development.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os06g0528600	LOC_Os06g33710.4, LOC_Os06g33710.3, LOC_Os06g33710.2, LOC_Os06g33710.1				GO:0008152 - metabolic process, GO:0010187 - negative regulation of seed germination, GO:0009693 - ethylene biosynthetic process, GO:0009873 - ethylene mediated signaling pathway, GO:0016049 - cell growth, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0009692 - ethylene metabolic process, GO:0048364 - root development, GO:0048831 - regulation of shoot development, GO:0009651 - response to salt stress, GO:0016740 - transferase activity, GO:0004766 - spermidine synthase activity, GO:0006596 - polyamine biosynthetic process	TO:0006032 - panicle size, TO:0000430 - germination rate, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000592 - 1000-dehulled grain weight, TO:0000339 - stem thickness, TO:0006001 - salt tolerance, TO:0000449 - grain yield per plant, TO:0000207 - plant height	PO:0000025 - root tip , PO:0020141 - stem node , PO:0009047 - stem , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0025034 - leaf 
14654	SPDS1	OsSPDS1, OsSPDS, SPDS	SPERMIDINE SYNTHASE 1	spermidine synthase 1, Spermidine synthase	SPERMIDINE SYNTHASE 1		7	LOC_Os07g22600. AJ251298. Q9SMB1. D15401.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os07g0408700	LOC_Os07g22600.2, LOC_Os07g22600.1				GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0004766 - spermidine synthase activity, GO:0009266 - response to temperature stimulus, GO:0008295 - spermidine biosynthetic process, GO:0009845 - seed germination	TO:0000432 - temperature response trait, TO:0006001 - salt tolerance	PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
14655	_	OsFUT11, FUT11, FucTA, OsFucT	_	core alpha-1, 3-fucosyltransferase, alpha1, 3-Fucosyltransferase, Glycoprotein 3-alpha-L-fucosyltransferase A		Osfuct	8	LOC_Os08g36840. AJ582955. GO:0036065: fucosylation. TO:0000860: flower length. GO:0090567: reproductive shoot system development. GO:0080186: developmental vegetative growth.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0472600	LOC_Os08g36840.1				GO:0009908 - flower development, GO:0006486 - protein amino acid glycosylation, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0008417 - fucosyltransferase activity, GO:0018392 - glycoprotein 3-alpha-L-fucosyltransferase activity, GO:0032580 - Golgi cisterna membrane, GO:0048653 - anther development, GO:0009555 - pollen development	TO:0000145 - internode length, TO:0000576 - stem length, TO:0000531 - anther length, TO:0002610 - pistil length, TO:0000429 - salt sensitivity, TO:0000040 - panicle length, TO:0000622 - flower development trait, TO:0000346 - tiller number, TO:0000448 - filled grain percentage, TO:0000207 - plant height, TO:0000214 - anther shape, TO:0000391 - seed size	PO:0007615 - flower development stage , PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
14656	_	GlcNAc-TI	_	N-acetylglucosaminyltransferase I			2	AJ457976.	 Biochemical character	Os02g0832800	LOC_Os02g58590.1				GO:0003827 - alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, GO:0006486 - protein amino acid glycosylation, GO:0000139 - Golgi membrane		
14657	_	OsAHL1, AHL1	_	AT-hook motif nuclear localized protein 1			8	BR000366.		Os08g0118000	LOC_Os08g02490.1				GO:0003677 - DNA binding		
14658	_	OsAHL2, AHL2	_	AT-hook motif nuclear localized protein 2			8	BR000367.		Os09g0491708	LOC_Os09g31470.1				GO:0003677 - DNA binding		
14659	GGT	OsGGT	GLYCOGENIN GLUCOSYLTRANSFERASE	glycogenin glucosyltransferase	GLYCOGENIN GLUCOSYLTRANSFERASE		10	AB164463. AC037426. TO:0000847: panicle inflorescence morphology trait.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0555100	LOC_Os10g40640.1				GO:0016757 - transferase activity, transferring glycosyl groups	TO:0000207 - plant height, TO:0000657 - spikelet anatomy and morphology trait	
14660	_	OsPrk	_	Phosphoribulokinase, PRKase			2	AF529237, AF543191. AP004778.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0698000 	LOC_Os02g47020.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0009941 - chloroplast envelope, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0009697 - salicylic acid biosynthetic process, GO:0009902 - chloroplast relocation, GO:0000165 - MAPKKK cascade, GO:0005524 - ATP binding, GO:0006098 - pentose-phosphate shunt, GO:0006364 - rRNA processing, GO:0006612 - protein targeting to membrane, GO:0008974 - phosphoribulokinase activity, GO:0009409 - response to cold, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0009595 - detection of biotic stimulus, GO:0009637 - response to blue light, GO:0050832 - defense response to fungus, GO:0048046 - apoplast, GO:0043900 - regulation of multi-organism process, GO:0042742 - defense response to bacterium, GO:0035304 - regulation of protein amino acid dephosphorylation, GO:0031348 - negative regulation of defense response, GO:0019344 - cysteine biosynthetic process, GO:0010363 - regulation of plant-type hypersensitive response, GO:0010319 - stromule, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0010218 - response to far red light, GO:0010207 - photosystem II assembly, GO:0010200 - response to chitin, GO:0010114 - response to red light, GO:0010103 - stomatal complex morphogenesis		
14661	EPSPS	EPSPs	ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE	5-enolpyruvylshikimate-3-phosphate synthase, EPSP synthase	ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE		6	LOC_Os06g04280. AB052962. AB016765. AB124881-AB124893 (EPSPs-rps20 genomic region in 13 strains of the Oryza AA genome species).	 Biochemical character	Os06g0133900	LOC_Os06g04280.1				GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009423 - chorismate biosynthetic process		
14662	RPS20	rps20	RIBOSOMAL PROTEIN S20	ribosomal protein small subunit 20, r-protein S20, ribosomal protein S20	RIBOSOMAL PROTEIN S20		6	D12632. AB052962. P35686. AB124881-AB124893 (EPSPs-rps20 genomic region in 13 strains of the Oryza AA genome species).	 Other	Os06g0134000	LOC_Os06g04290.1				GO:0015935 - small ribosomal subunit, GO:0003723 - RNA binding, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
14663	RPS40	rps40	RIBOSOMAL PROTEIN S40	ribosomal protein small subunit 40	RIBOSOMAL PROTEIN S40		6		 Other								
14664	CIN4	OsCIN4	CELL-WALL INVERTASE 4	cell-wall invertase 4	CELL-WALL INVERTASE 4		3	AY575551. LOC_Os03g52560. Os03g0735600 (in Ncbi and UniProt).	 Biochemical character	Os03g0735800	LOC_Os03g52560.1						
14665	CIN9	OsCIN9	CELL-WALL INVERTASE 9	cell-wall invertase 9	CELL-WALL INVERTASE 9		9	AP005738.	 Biochemical character								
14666	NIN1	OsNIN1	NEUTRAL/ALKALINE INVERTASE 1	neutral/alkaline invertase 1	NEUTRAL/ALKALINE INVERTASE 1		3	AY575558.	 Biochemical character	Os03g0314800	LOC_Os03g20020.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14667	NIN2	OsNIN2, CytINV	NEUTRAL/ALKALINE INVERTASE 2	neutral/alkaline invertase 2, cytosolic neutral invertase	NEUTRAL/ALKALINE INVERTASE 2		1	LOC_Os01g22900. AY575559.	 Biochemical character	Os01g0332100	LOC_Os01g22900.3, LOC_Os01g22900.2, LOC_Os01g22900.1				GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity, GO:0008152 - metabolic process		
14668	NIN3	OsNIN3	NEUTRAL/ALKALINE INVERTASE 3	neutral/alkaline invertase 3	NEUTRAL/ALKALINE INVERTASE 3		2	AY575560.	 Biochemical character	Os02g0529400	LOC_Os02g32730.1				GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity, GO:0008152 - metabolic process		
14669	NIN4	OsNIN4	NEUTRAL/ALKALINE INVERTASE 4	neutral/alkaline invertase 4	NEUTRAL/ALKALINE INVERTASE 4		4	AY575561.	 Biochemical character	Os04g0409900	LOC_Os04g33490.1				GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity, GO:0008152 - metabolic process		
14670	NIN5	OsNIN5	NEUTRAL/ALKALINE INVERTASE 5	neutral/alkaline invertase 5	NEUTRAL/ALKALINE INVERTASE 5		2	AY575562.	 Biochemical character	Os02g0125600	LOC_Os02g03320.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14671	NIN6	OsNIN6	NEUTRAL/ALKALINE INVERTASE 6	neutral/alkaline invertase 6	NEUTRAL/ALKALINE INVERTASE 6		11	AY575563.	 Biochemical character	Os11g0175400	LOC_Os11g07440.4, LOC_Os11g07440.3, LOC_Os11g07440.2, LOC_Os11g07440.1				GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity, GO:0008152 - metabolic process		
14672	NIN7	OsNIN7	NEUTRAL/ALKALINE INVERTASE 7	neutral/alkaline invertase 7	NEUTRAL/ALKALINE INVERTASE 7		4	AY575564.	 Biochemical character	Os04g0432400	LOC_Os04g35280.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14673	NIN8	OsNIN8	NEUTRAL/ALKALINE INVERTASE 8	neutral/alkaline invertase 8	NEUTRAL/ALKALINE INVERTASE 8		2	AY575565.	 Biochemical character	Os02g0550600	LOC_Os02g34560.2, LOC_Os02g34560.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14674	_	OsDGAT	_	Diacylglycerol acyltransferase			5	AY858584.	 Biochemical character	Os05g0196800	LOC_Os05g10810.1				GO:0004144 - diacylglycerol O-acyltransferase activity, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane, GO:0019432 - triglyceride biosynthetic process		
14675	_	FAAH	_	Fatty acid amide hydrolase, Os NAE AHase, N-acylethanolamine amidohydrolase			4	DQ118178.	 Biochemical character	Os04g0102700	LOC_Os04g01250.3, LOC_Os04g01250.2, LOC_Os04g01250.1				GO:0016787 - hydrolase activity, GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor		
14676	_	OsPI4K1, OsPI4K2	_	phosphatidylinositol 4-kinase 1, phosphatidylinositol 4-kinase 2, alpha-type phosphatidylinositol 4-kinase, beta-type phosphatidylinositol 4-kinase, alpha-type PI4K, beta-type PI4K			11	AF172282, AJ277791, AY536061. FJ266019-FJ266028 (indica and other wild rice species).	 Biochemical character	Os11g0209700	LOC_Os11g10420.2, LOC_Os11g10420.1				GO:0006661 - phosphatidylinositol biosynthetic process, GO:0004430 - 1-phosphatidylinositol 4-kinase activity, GO:0016301 - kinase activity, GO:0048015 - phosphoinositide-mediated signaling		
14677	_	OsLon1, LON1, OsLonP4, LONP4, LON2	_	Lon protease 1, Lon protease 4, LON PROTEASE 2			9	AY129070. B8BDV1, Q0J032. LOC_Os09g36300. Lon Protease Pamily (Peptidase_S16; PF05362). OsLonP4 in http://rice.plantbiology.msu.edu/ca/gene_fams/27_79.shtml LON2 in Dedecker et al. 2016. 	 Biochemical character	Os09g0533400	LOC_Os09g36300.4, LOC_Os09g36300.3, LOC_Os09g36300.2, LOC_Os09g36300.1				GO:0004176 - ATP-dependent peptidase activity, GO:0016485 - protein processing, GO:0004252 - serine-type endopeptidase activity, GO:0006200 - ATP catabolic process, GO:0006515 - misfolded or incompletely synthesized protein catabolic process, GO:0016558 - protein import into peroxisome matrix, GO:0005782 - peroxisomal matrix, GO:0005524 - ATP binding		
14678	RPL3A	OsRPL3A, ARP1, ARP3	RIBOSOMAL PROTEIN L3A	ribosomal protein L3A, r-protein L3, ribosomal protein L3	RIBOSOMAL PROTEIN L3A		12	BK001243, BK001029, D12630. D10403 (partial cds). P35684. D16034, D15934.		Os12g0167900	LOC_Os12g07010.1				GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0005730 - nucleolus, GO:0005618 - cell wall, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
14679	RPL3B	OsRPL3B, RPL3, OsRPL3	RIBOSOMAL PROTEIN L3B	ribosomal protein L3B	RIBOSOMAL PROTEIN L3B		11	LOC_Os11g06750. BK001242, BK001244, AY236158. RPL3 in Moin et al. 2016.	 Tolerance and resistance - Disease resistance,  Other	Os11g0168200	LOC_Os11g06750.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0000027 - ribosomal large subunit assembly, GO:0003723 - RNA binding, GO:0005840 - ribosome, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
14680	_	OSMYOXIB, OsMyoXIB	_	myosin XI B, Myosin class XI B		osmyoXIB	2	AY907549.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0816900	LOC_Os02g57190.1				GO:0005524 - ATP binding, GO:0016459 - myosin complex, GO:0003774 - motor activity		
14681	_	OsSNAP32, SNAP32	_	Synaptosomal-associated protein 32, Synaptosome-associated protein of 32 kD			2	a SNAP25-type t-SNARE protein. AY900120. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0437200	LOC_Os02g24080.1, LOC_Os02g24080.2, LOC_Os02g24080.3, LOC_Os02g24080.5, LOC_Os02g24080.4				GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000180 - spikelet fertility, TO:0000269 - 100-seed weight	PO:0025034 - leaf 
14682	_	OsACP1, ACP1	_	acid phosphatase 1			1	DQ912176. a novel Pi starvation-induced gene.	 Tolerance and resistance - Stress tolerance	Os01g0720400	LOC_Os01g52230.1				GO:0016791 - phosphatase activity, GO:0042594 - response to starvation, GO:0016311 - dephosphorylation		
14683	_	ZFP182	_	zinc finger protein ZFP182, zinc finger protein 182			3	AY286474. HQ858836. C2H2 transcription factor.	 Tolerance and resistance - Stress tolerance	Os03g0820300	LOC_Os03g60560.1				GO:0046872 - metal ion binding		
14684	_	OsCMS, CMS, OsIspD, IspD	_	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase, CDP-ME synthase			1	AB296384. Q5N8G1. LOC_Os01g66360. Os01g0887000  (in Rap2 (build4)).	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0887100	LOC_Os01g66360.1	GR:0101299			GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity, GO:0009570 - chloroplast stroma		
14685	_	OsDXR, DXR, OsIspC, IspC	_	1-deoxy-D-xylulose 5-phosphate reductoisomerase, DXP reductoisomerase		osdxr	1	Q8W250.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0106900	LOC_Os01g01710.2, LOC_Os01g01710.1				GO:0009411 - response to UV, GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity, GO:0046872 - metal ion binding, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009416 - response to light stimulus, GO:0070402 - NADPH binding, GO:0009570 - chloroplast stroma	TO:0000160 - UV light sensitivity, TO:0000075 - light sensitivity	
14686	_	OsHDR, HDR, OsIspH, IspH	_	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, HMBDP reductase			3	Q6AVG6.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0731900	LOC_Os03g52170.1				GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0050992 - dimethylallyl diphosphate biosynthetic process, GO:0009570 - chloroplast stroma, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity, GO:0046872 - metal ion binding		
14687	_	OsHDS, HDS, OsIspG, IspG	_	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, HMBDP synthase			2	Q6K8J4.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0603800	LOC_Os02g39160.1				GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0005506 - iron ion binding, GO:0009570 - chloroplast stroma, GO:0016114 - terpenoid biosynthetic process, GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway		
14688	_	OsMCS, MCS, IspF, OsIspF	_	2-C-methyl-D-erythritol 2, 4-cyclodiphosphate synthase, MECDP synthase		ispF-1	2	LOC_Os02g45660. Q6EPN6. the fifth enzyme in the MEP (2-C-methyl-d-erythritol 4-phosphate) pathway for isoprenoid biosynthesis.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0680600	LOC_Os02g45660.1				GO:0009570 - chloroplast stroma, GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, GO:0016114 - terpenoid biosynthetic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009658 - chloroplast organization, GO:0046872 - metal ion binding, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	
14689	DXS3	OsDXS, OsDXS3, dxs3	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3	1-Deoxy-D-xylulose 5-phosphate synthase 3, DXP synthase 3	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3		7	Q6YU51. GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process. catalyzing the first step of the MEP (methylerythritol phosphate) pathway. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0190000	LOC_Os07g09190.1				GO:0002238 - response to molecule of fungal origin, GO:0009507 - chloroplast, GO:0009228 - thiamin biosynthetic process, GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity, GO:0046872 - metal ion binding, GO:0016114 - terpenoid biosynthetic process, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
14690	_	OsCMK, CMK, OsIspE, IspE	_	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, CDP-ME kinase, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase			1	Q8S2G0.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0802100	LOC_Os01g58790.2, LOC_Os01g58790.1				GO:0005524 - ATP binding, GO:0009570 - chloroplast stroma, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016114 - terpenoid biosynthetic process, GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
14691	MST4	OsMST4	MONOSACCHARIDE TRANSPORTER 4	monosaccharide transporter 4	MONOSACCHARIDE TRANSPORTER 4		3	AY342321.	 Biochemical character	Os03g0218400	LOC_Os03g11900.1				GO:0022891 - substrate-specific transmembrane transporter activity, GO:0016021 - integral to membrane		
14692	MST5	OsMST5	MONOSACCHARIDE TRANSPORTER 5	monosaccharide transporter 5	MONOSACCHARIDE TRANSPORTER 5		8		 Biochemical character	Os08g0178200 	LOC_Os08g08070.1				GO:0022891 - substrate-specific transmembrane transporter activity, GO:0016021 - integral to membrane		
14693	MST6	OsMST6	MONOSACCHARIDE TRANSPORTER 6	monosaccharide transporter 6	MONOSACCHARIDE TRANSPORTER 6		7	AY342322. GO:0140013: meiotic nuclear division.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os07g0559700	LOC_Os07g37320.1				GO:0051321 - meiotic cell cycle, GO:0016021 - integral to membrane, GO:0022891 - substrate-specific transmembrane transporter activity		
14694	_	LGH1	_	lazy growth habit1			7	The lazy growth habit of common wild rice is dominantand is controlled by a single gene, LGH1. The LGH1 locus was mapped on the short arm of chromosome 7.									
14695	_	Rf	_	restorer-of-fertility, fertility restorer			10	The Rf gene was located on chromosome 10 of common wild rice (Oryza rufipogon Griff.). The marker RF28 is closely linked to the Rf gene.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
14696	_	SP	_	spread panicle			4	PO:0009049; inflorescence. One locus (SP) controllingthe panicle shape of common wild rice (Oryza rufipogon Griff.) was mapped on the long arm of chromosome 4, and with the marker SPM closely linked to SP.	 Reproductive organ - Inflorescence						GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
14697	_	OsXRCC1	_	X-ray repair cross complementing protein 1			6	AB292807.		Os06g0144000	LOC_Os06g05190.1						
14698	_	OsPol lambda	_	DNA polymerase lambda			6	AB099525.	 Biochemical character	Os06g0237200	LOC_Os06g13020.2, LOC_Os06g13020.1				GO:0003677 - DNA binding, GO:0006281 - DNA repair, GO:0003887 - DNA-directed DNA polymerase activity		
14699	_	OsBphi237	_	BPH-inducible gene 237, Brown planthopper-inducible gene 237				EU513006.	 Tolerance and resistance - Insect resistance								
14700	_	OsBphi262	_	BPH-inducible gene 262, Brown planthopper-inducible gene 262			5	EU513010.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os05g0402900	LOC_Os05g33400.1				GO:0006508 - proteolysis, GO:0004190 - aspartic-type endopeptidase activity		
14702	_	OsMIK, LPA	_	myo-inositol kinase, low phytic acid		lpa N15-186, lpa	3	EU366952. an orthologue of maize lpa3. a low phytic acid (lpa) rice mutant. LOC_Os03g52760.	 Seed - Physiological traits - Storage substances	Os03g0737701	LOC_Os03g52760.1				GO:0006793 - phosphorus metabolic process, GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0009737 - response to abscisic acid stimulus, GO:0016301 - kinase activity	TO:0002666 - seed phosphorus content, TO:0000615 - abscisic acid sensitivity	
14703	_	OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415	_	tubby-like protein 1, tubby-like protein 8, F-box protein 259			5	LOC_Os05g36190. Q75HX5. OsTLP1 in Kou et al. 2009. Os_F0415 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os05g0437900	LOC_Os05g36190.1						
14704	_	OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479	_	tubby-like protein 2, tubby-like protein 12, F-box protein 402			8	LOC_Os08g01290. Q69U54. OsTLP2 in Kou et al. 2009. 	 Tolerance and resistance - Disease resistance	Os08g0103300	LOC_Os08g01290.7, LOC_Os08g01290.6, LOC_Os08g01290.5, LOC_Os08g01290.4, LOC_Os08g01290.3, LOC_Os08g01290.2, LOC_Os08g01290.1						
14705	_	OsTLP3, OsTLP7, OsFbox240, Os_F0401	_	tubby-like protein 3, tubby-like protein 7, F-box protein 240			4	LOC_Os04g59130. Q7XSV4. OsTLP3 in Kou et al. 2009. Os_F0401 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os04g0687900	LOC_Os04g59130.1						
14706	_	OsTLP4, OsTLP14, OsFbox645, Os_F0315	_	tubby-like protein 4, tubby-like protein 14, F-box protein 645			12	LOC_Os12g06630. Q2QXB2. OsTLP4 in Kou et al. 2009.	 Tolerance and resistance - Disease resistance	Os12g0163400	LOC_Os12g06630.3, LOC_Os12g06630.2, LOC_Os12g06630.1						
14707	_	OsTLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396	_	tubby-like protein 5, tubby-like protein 3, F-box protein 50			1	Q8LJA9. LOC_Os01g64700. OsTLP5 in Kou et al. 2009. Os_F0396 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os01g0866800	LOC_Os01g64700.2, LOC_Os01g64700.1						
14708	_	OsTLP6, OsTLP13, OsFbox569, Os_F0461	_	tubby-like protein 6, tubby-like protein 13, F-box protein 569			11	LOC_Os11g06420. Q53PP5. OsTLP6 in Kou et al. 2009.	 Tolerance and resistance - Disease resistance	Os11g0163600	LOC_Os11g06420.2, LOC_Os11g06420.1						
14709	_	OsTLP7, OsTLP11, OsFbox398, Os_F0421	_	tubby-like protein 7, tubby-like protein 11, F-box protein 398			7	LOC_Os07g47110. Q8H485. OsTLP7 in Kou et al. 2009. 	 Tolerance and resistance - Disease resistance	Os07g0667000	LOC_Os07g47110.1						
14710	_	OsTLP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446	_	tubby-like protein 8, tubby-like protein 5, F-box protein 107			2	Q6Z2G9. LOC_Os02g47640. OsTLP8 in Kou et al. 2009. Os_F0446 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os02g0705300	LOC_Os02g47640.1						
14711	_	OsTLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675	_	tubby-like protein 9, tubby-like protein 1, F-box protein 34			1	Q5QM27. LOC_Os01g48370. OsTLP9 in Kou et al. 2009. Os_F0675 in Hua et al. 2011.	 Tolerance and resistance - Stress tolerance	Os01g0674500	LOC_Os01g48370.1						
14712	_	OsTLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560	_	tubby-like protein 10, tubby-like protein 9, F-box protein 267			5	LOC_Os05g43850. Q68Y48. OsTLP10 in Kou et al. 2009. Os_F0560 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os05g0514300	LOC_Os05g43850.1						
14713	_	OsTLP11, OsTLP10, OsFbox278, Os_F0631	_	tubby-like protein 11, tubby-like protein 10, F-box protein 278			5	LOC_Os05g48670. Q688Y7. EU328286. OsTLP11 in Kou et al. 2009.	 Tolerance and resistance - Disease resistance	Os05g0560400	LOC_Os05g48670.1						
14714	_	OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683	_	tubby-like protein 12, tubby-like protein 2, F-box protein 39			1	Q94DT9. LOC_Os01g55430. OsTLP12 in Kou et al. 2009. Os_F0683 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os01g0759100	LOC_Os01g55430.2, LOC_Os01g55430.1						
14715	_	OsTLP14, OsTLP6, OsFbox139, Os_F0681	_	tubby-like protein 14, tubby-like protein 6, F-box protein 139			3	LOC_Os03g22800. Q10LG8. OsTLP14 in Kou et al. 2009. Os_F0681 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os03g0351400	LOC_Os03g22800.3, LOC_Os03g22800.2, LOC_Os03g22800.1						
14716	_		_	50S ribosomal protein			2	EF444532.	 Tolerance and resistance - Disease resistance	Os02g0137200	LOC_Os02g04460.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
14717	TOND1		TOLERANCE OF NITROGEN DEFICIENCY 1	Thaumatin, Tolerance Of Nitrogen Deficiency 1			12	EF444529. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0630100	LOC_Os12g43440.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0005886 - plasma membrane, GO:0042594 - response to starvation	TO:0000011 - nitrogen sensitivity	PO:0025034 - leaf , PO:0009066 - anther , PO:0005020 - vascular bundle , PO:0025281 - pollen , PO:0020104 - leaf sheath , PO:0009051 - spikelet , PO:0006000 - caryopsis hull 
14718	_	nDaiZ1	_	transposable element nDaiZ1			1		 Other						GO:0032196 - transposition		
14719	_	nDaiZ2	_	transposable element nDaiZ2			1		 Other						GO:0032196 - transposition		
14720	_	nDaiZ3	_	transposable element nDaiZ3			2		 Other						GO:0032196 - transposition		
14721	_	nDaiZ4	_	transposable element nDaiZ4			3		 Other						GO:0032196 - transposition		
14722	_	nDaiZ5	_	transposable element nDaiZ5			3		 Other						GO:0032196 - transposition		
14723	_	nDaiZ6	_	transposable element nDaiZ6			5		 Other						GO:0032196 - transposition		
14724	_	nDaiZ7	_	transposable element nDaiZ7			5		 Other						GO:0032196 - transposition		
14725	_	nDaiZ8	_	transposable element nDaiZ8			5		 Other						GO:0032196 - transposition		
14726	_	nDaiZ9	_	transposable element nDaiZ9			5		 Other						GO:0032196 - transposition		
14727	_	nDaiZ10	_	transposable element nDaiZ10			6		 Other						GO:0032196 - transposition		
14728	_	nDaiZ11	_	transposable element nDaiZ11			6		 Other						GO:0032196 - transposition		
14729	_	nDaiZ12	_	transposable element nDaiZ12			7		 Other						GO:0032196 - transposition		
14730	_	nDaiZ13	_	transposable element nDaiZ13			7		 Other						GO:0032196 - transposition		
14731	_	nDaiZ14	_	transposable element nDaiZ14			7		 Other						GO:0032196 - transposition		
14732	_	nDaiZ15	_	transposable element nDaiZ15			11		 Other						GO:0032196 - transposition		
14733	_	nDaiZ16	_	transposable element nDaiZ16			11		 Other						GO:0032196 - transposition		
14734	_	DaiZ1	_	transposable element DaiZ1			1		 Other						GO:0032196 - transposition		
14735	_	DaiZ4	_	transposable element DaiZ4			4		 Other						GO:0032196 - transposition		
14736	_	DaiZ6	_	transposable element DaiZ6			6		 Other						GO:0032196 - transposition		
14737	_	DaiZ7	_	transposable element DaiZ7			7	FJ167392.	 Other						GO:0032196 - transposition		
14738	_	DaiZ10	_	transposable element DaiZ10			10		 Other						GO:0032196 - transposition		
14739	_	SerR	_	serine racemase			4	AB425957. Q7XSN8.	 Biochemical character	Os04g0555900	LOC_Os04g46930.2, LOC_Os04g46930.1				GO:0006563 - L-serine metabolic process, GO:0046872 - metal ion binding, GO:0003941 - L-serine ammonia-lyase activity, GO:0008721 - D-serine ammonia-lyase activity, GO:0005524 - ATP binding, GO:0016853 - isomerase activity, GO:0070178 - D-serine metabolic process, GO:0043621 - protein self-association		
14740	_	OsHAL3, HAL3	_	halotolerance protein HAL3			6	a flavin mononucleotide (FMN)-binding protein. a putative 4'-phosphopantothenoylcysteine decarboxylase. FJ809894. LOC_Os06g09910. Q69K55.	 Biochemical character,  Reproductive organ - Heading date,  Other	Os06g0199500	LOC_Os06g09910.2, LOC_Os06g09910.1				GO:0009651 - response to salt stress, GO:0016563 - transcription activator activity, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0009637 - response to blue light, GO:0010181 - FMN binding, GO:0004633 - phosphopantothenoylcysteine decarboxylase activity, GO:0015937 - coenzyme A biosynthetic process, GO:0070207 - protein homotrimerization, GO:0001558 - regulation of cell growth, GO:0005634 - nucleus, GO:0008152 - metabolic process, GO:0003824 - catalytic activity	TO:0006001 - salt tolerance, TO:0000159 - blue light sensitivity, TO:0002616 - flowering time	PO:0009013 - portion of meristem tissue 
14741	HIP1	OsHIP1, HAF1, OsHAF1	HAL3-INTERACTING PROTEIN 1	OsHAL3-interacting protein 1, Heading date Associated Factor 1	HAL3-INTERACTING PROTEIN 1	haf1	4	a protein with a RING-finger motif with similarity to E3 ligase. LOC_Os04g55510. Q7XTV7. RING Finger Protein (OsRFP).	 Reproductive organ - Heading date	Os04g0648800	LOC_Os04g55510.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0016567 - protein ubiquitination, GO:0048573 - photoperiodism, flowering, GO:0040008 - regulation of growth, GO:0032922 - circadian regulation of gene expression, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0016740 - transferase activity	TO:0002616 - flowering time, TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0025034 - leaf 
14742	_	OsEGL2	_	endo-(1,3;1,4)-beta-glucanase 2			1	BAB85436. AU162234.	 Biochemical character	Os01g0942300	LOC_Os01g71474.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
14743	_	OsCDAP1, GID1L2	_	Cell death associated protein 1			7	C25992. GID1L2 in Li et al. 2016. LOC_Os07g06830. GA receptor.	 Biochemical character	Os07g0162400	LOC_Os07g06830.1				GO:0016787 - hydrolase activity, GO:0008152 - metabolic process		
14744	_	OsCDAP2	_	Cell death associated protein 2			7		 Biochemical character	Os07g0162700	LOC_Os07g06860.1				GO:0016787 - hydrolase activity		
14745	_	OsCDAP3	_	Cell death associated protein 3			7	AU029527, C74392.	 Biochemical character	Os07g0162900	LOC_Os07g06880.1				GO:0016787 - hydrolase activity		
14746	_	D14L	_	Os hydrolase, DWARF 14 LIKE, hebibaD14L			3	ABF96818. Q10J20. LOC_Os03g32270. an alpha/beta-fold hydrolase. homologous to Arabidopsis thaliana KARRIKIN INSENSITIVE2/HYPOSENSITIVE TO LIGHT (KAI2/HTL). The hebiba mutant is due to a genomic deletion of 169 kb, which contains 26 annotated genes (Gutjahr et al. 2015). GO:0080167: response to karrikin.	 Biochemical character,  Tolerance and resistance	Os03g0437600	LOC_Os03g32270.1				GO:0016787 - hydrolase activity, GO:0009603 - detection of symbiotic fungus		
14747	_	LP2, OsLP2	_	Leaf Panicle 2			2	FJ831442. a leucine-rich repeat receptor kinase. LOC_Os02g40240.	 Tolerance and resistance - Stress tolerance	Os02g0615800	LOC_Os02g40240.2, LOC_Os02g40240.1				GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0010119 - regulation of stomatal movement, GO:0004672 - protein kinase activity	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
14748	_	OsABA45, ABA45, OsGDP, GDP	_	Gram Domain Protein, ABA-responsive gene45, ABA-responsive gene 45			12	an ABA- or wound-inducible protein. LOC_Os12g29400. GO:0080181: lateral root branching.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os12g0478200	LOC_Os12g29400.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000043 - root anatomy and morphology trait	
14749	RNS7	OsRNS7	RIBONUCLEASE 7	RNase 7	RIBONUCLEASE 7		7		 Biochemical character	Os07g0629300	LOC_Os07g43600.1				GO:0003723 - RNA binding, GO:0033897 - ribonuclease T2 activity		
14750	RNS8	OsRNS8	RIBONUCLEASE 8	RNase 8	RIBONUCLEASE 8		7		 Biochemical character	Os07g0629900	LOC_Os07g43640.1				GO:0003723 - RNA binding, GO:0033897 - ribonuclease T2 activity		
14752	18S  rRNA		18S RIBOSOMAL RNA	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA, 18S rDNA			9	FJ411058 (O. brachyantha), GU111553 (O. australiensis).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14753	26S  rRNA		26S RIBOSOMAL RNA	26S RIBOSOMAL RNA, 26S ribosomal RNA, 26S rRNA, 26S rDNA			9	FJ411058 (O. brachyantha), GU111553 (O. australiensis).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14754	_	OsPAO, PAO	_	Pheophorbide a oxygenase			3	LOC_Os03g05310.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0146400	LOC_Os03g05310.1				GO:0010150 - leaf senescence, GO:0015996 - chlorophyll catabolic process, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0010277 - chlorophyllide a oxygenase activity, GO:0046872 - metal ion binding	TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content	PO:0001054 - 4 leaf senescence stage 
14755	RCCR1	OsRCCR1, OsRCCR, RCCR	RED CHLOROPHYLL CATABOLITE REDUCTASE 1	red chlorophyll catabolite reductase 1	RED CHLOROPHYLL CATABOLITE REDUCTASE 1		10	JN604886.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0389200	LOC_Os10g25030.1				GO:0015996 - chlorophyll catabolic process, GO:0009413 - response to flooding, GO:0051607 - defense response to virus, GO:0010150 - leaf senescence	TO:0000524 - submergence tolerance, TO:0000249 - leaf senescence, TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance	PO:0001054 - 4 leaf senescence stage 
14756	RCCR2	OsRCCR2, OsRCCR1, RCCR1	RED CHLOROPHYLL CATABOLITE REDUCTASE 2	red chlorophyll catabolite reductase 2	RED CHLOROPHYLL CATABOLITE REDUCTASE 2		10	JN604887. LOC_Os10g25040. OsRCCR1 in Mao et al. 2017.	 Biochemical character,  Vegetative organ - Leaf	Os10g0389300	LOC_Os10g25040.2, LOC_Os10g25040.1				GO:0010150 - leaf senescence	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
14757	RCCR3	OsRCCR3	RED CHLOROPHYLL CATABOLITE REDUCTASE 3	red chlorophyll catabolite reductase 3	RED CHLOROPHYLL CATABOLITE REDUCTASE 3		10		 Biochemical character	Os10g0389100	LOC_Os10g25020.1						
14758	_	Ubi1	_	Ubiquitin1, polyubiquitin			6	AF184279. C98695. D22531 (replaced by C97944).	 Tolerance and resistance - Stress tolerance	Os06g0681400 	LOC_Os06g46770.6, LOC_Os06g46770.5, LOC_Os06g46770.4, LOC_Os06g46770.3, LOC_Os06g46770.2, LOC_Os06g46770.1					TO:0000432 - temperature response trait	
14759	_	trnC, trnC(GCA), trnC-GCA	_	tRNA-Cys, Cys-tRNA(GCA)			Pt	X15901 (Japonica Group chloroplast genome). FJ908467-FJ908481 (wild rice species, trnC-rpoB intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14760	_	ycf6	_				Pt										
14762	RPS2	rps2, rps2a, rps2b	RIBOSOMAL PROTEIN S2	ribosomal protein S2	RIBOSOMAL PROTEIN S2		Mt	AP011077 (Indica Group mitochondrial DNA, complete genome).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other						GO:0005840 - ribosome, GO:0005739 - mitochondrion		
14764	TOS1-1	Tos1-1	_	transposon of O. sativa 1-1, retrotransposon Tos1-1				X66521.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
14765	TOS1-2	Tos1-2	_	transposon of O. sativa 1-2, retrotransposon Tos1-2				X66522.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
14766	TOS2	Tos2, Tos2-1	_	transposon of O. sativa 2, retrotransposon Tos2					 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
14767	TOS3	Tos3, Tos3-1	_	transposon of O. sativa 3, retrotransposon Tos3					 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
14768	_		_	reverse transcriptase				D12825 (clone=TOSRT-1).	 Other						GO:0006278 - RNA-dependent DNA replication, GO:0003964 - RNA-directed DNA polymerase activity		
14769	_		_	reverse transcriptase				D12826 (clone=TOSRT-4).	 Other								
14770	_	rbcL	_		_		Mt	D13101 (contains a part of rbcL gene). a transferred chloroplast DNA sequence.									
14771	_	atpB	_	ATP synthase beta subunit			Mt	a transferred chloroplast DNA sequence.	 Biochemical character								
14772	_	atpE	_	ATP synthase epsilon subunit			Mt		 Biochemical character								
14773	_	trnM, trnM(CAU), trnM-CAU	_	tRNA-Met, Met-tRNA(CAU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14774	_	trnV, trnV(UAC), trnV-UAC	_	tRNA-Val, Val-tRNA(UAC)			Pt	X15901 (Japonica Group chloroplast genome). FJ908303-FJ908655 (wild rice species).  AB436227-AB436285 (wild rice species, ndhC-tRNA Val intergenic region). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14775	_	trnM	_	tRNA-Met			Mt										
14777	RPL2	rpl2	RIBOSOMAL PROTEIN L2	ribosomal protein L2	RIBOSOMAL PROTEIN L2		Mt	D13101 (a transferred chloroplast DNA sequence contais a part of rpl2 gene). X12845 (contais rpl2 initiation codon). 	 Other								
14778	RPS12	rps12	RIBOSOMAL PROTEIN S12	ribosomal protein S12	RIBOSOMAL PROTEIN S12		Pt	X15901: CAA33929 (Japonica Group chloroplast genome). P12149. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).  	 Other						GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0009536 - plastid, GO:0015935 - small ribosomal subunit, GO:0006412 - translation, GO:0019843 - rRNA binding		
14779	_	trnK(UUU), trnK, trnK-UUU	_	tRNA-Lys, Lys-tRNA(UUU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14780	RPS16	rps16	RIBOSOMAL PROTEIN S16	ribosomal protein S16	RIBOSOMAL PROTEIN S16		Pt	LOC_Osp1g00130. X15901: CAA34009 (Japonica Group chloroplast genome). P12151. FJ908401-FJ908415 (wild rice species). EU434222, EU434223 (O. rufipogon and O.sativa intron). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00130				GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0009536 - plastid, GO:0006412 - translation, GO:0005840 - ribosome		
14781	_	trnQ(UUG), trnQ, trnQ-UUG	_	tRNA-Gln, Gln-tRNA(UUG)			Pt	X15901 (Japonica Group chloroplast genome). FJ908228-FJ908242 (wild rice species, rps16-trnQ intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14782	_	trnS(GCU), trnS, trnS-GCU	_	tRNA-Ser, Ser-tRNA(GCU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14783	_	ORF100	_				Pt	LOC_Osp1g00160. X15901 (Japonica Group chloroplast genome). CAA34012.			LOC_Osp1g00160						
14784	_	trnS(UGA), trnS, trnS-UGA	_	tRNA-Ser, Ser-tRNA(UGA)			Pt	X15901 (Japonica Group chloroplast genome). FJ908575-FJ908588 (wild rice species, trnS-psbZ intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14786	_	trnG(GCC), trnG, trnG-GCC, trnG-UCC	_	tRNA-Gly, Gly-tRNA(GCC)			Pt	X15901 (Japonica Group chloroplast genome). AB436168-AB436226. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). trnG-UCC in Zhang et al. 2012.									
14787	_	trnG(GCC).p, trnG.p	_	tRNA-Gly pseudogene, trnG pseudogene			Pt	X15901 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14788	_	trnfM(CAU), trnfM, trnfM-CAU	_	tRNA-Met, tRNA-fMet, fMet-tRNA(CAU)			Pt	X15901 (Japonica Group chloroplast genome). FJ908575-FJ908588 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14789	_	trnG(UCC), trnG, trnG-UCC	_	tRNA-Gly, Gly-tRNA(UCC)			Pt	X15901 (Japonica Group chloroplast genome). FJ908500-FJ908589 (wild rice species). AP006728 (Oryza nivara chloroplast genome).									
14790	_	ORF91	_				Pt	X15901: CAA33982 (Japonica Group chloroplast genome). Q32759. LOC_Osp1g00200. AP006728 (Oryza nivara chloroplast genome). orf89 in Oryza nivara.			LOC_Osp1g00200				GO:0009507 - chloroplast, GO:0009536 - plastid		
14791	_	trnI.p	_	tRNA-Ile pseudogene			Pt	X15901 (Japonica Group chloroplast genome). 									
14792	_	ORF70	_				Pt	LOC_Osp1g00210. X15901: CAA33983 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). 			LOC_Osp1g00210						
14793	_	trnT(GGU), trnT, trnT-GGU	_	tRNA-Thr, Thr-tRNA(GGU)			Pt	X15901 (Japonica Group chloroplast genome). FJ908608-FJ908622 (wild rice species, trnT-trnD intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14794	_	trnT(GGU).p, trnT.p	_	tRNA-Thr pseudogene, trnT pseudodogene			Pt	X15901 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). 									
14795	_	trnE(UUC), trnE, trnE-UUC	_	tRNA-Glu, Glu-tRNA(UUC)			Pt	X15901 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome).									
14796	_	trnY(GUA), trnY, tmY-GUA	_	tRNA-Tyr, Tyr-tRNA(GUA)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14797	_	trnD(GUC), trnD, trnD-GUC	_	tRNA-Asp, Asp-tRNA(GUC)			Pt	X15901 (Japonica Group chloroplast genome). FJ908608-FJ908622 (wild rice species, trnT-trnD intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14798	_	ORF29, petN	_	cytochrome b6/f complex subunit VIII			Pt	X15901: CAA33985 (Japonica Group chloroplast genome). P61042. LOC_Osp1g00230. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00230				GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0055114 - oxidation reduction, GO:0009512 - cytochrome b6f complex, GO:0009535 - chloroplast thylakoid membrane, GO:0017004 - cytochrome complex assembly, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009536 - plastid		
14799	_	atpF	_	ATPase I subunit, ATP synthase CF0 subunit I			Pt	LOC_Osp1g00300 (ATP synthase CF0 B chain). X15901:CAA33992 (Japonica Group chloroplast genome). AY522330: AAS46117: Nip045 (cultivar Nipponbare), AY522331 (isolate PA64S). P0C2Z0. FJ908129-FJ908143 (wild rice species). GU592207:ADD62830 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00300				GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0015986 - ATP synthesis coupled proton transport, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o)		
14800	_	trnR(UCU), trnR, trnR-UCU	_	tRNA-Arg, Arg-tRNA(UCU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14801	_	ORF170, ycf3, IRF170	_	Ycf3 protein, photosystem I assembly protein Ycf3, hypothetical chloroplast RF34			Pt	LOC_Osp1g00350. X15901: CAA33997 (Japonica Group chloroplast genome). P12203. FJ908673-FJ908687 (wild rice species). IRF = an introncontaining reading frame (Shimada and Sugiura 1991). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00350				GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis		
14802	_	trnS(GGA), trnS, trnS-GGA	_	tRNA-Ser, Ser-tRNA(GGA)			Pt	X15901 (Japonica Group chloroplast genome).  JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14803	_	trnT(UGU), trnT, trnT-UGU	_	tRNA-Thr, Thr-tRNA(UGU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14804	_	trnL(UAA), trnL, trnL-UAA	_	tRNA-Leu, transfer RNA leucine, Leu-tRNA(UAA)			Pt	X15901 (Japonica Group chloroplast genome). FJ908533-FJ908538 (wild rice species). AF520764-AF520771 (wild rice species).  DQ131552, DQ131553 (O.sativa and O. punctata). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).  EF137577 (partial sequence).									
14805	_	trnF(GAA), trnF, trnF-GAA	_	tRNA-Phe, transfer RNA phenylalanine, Phe-tRNA(GAA)			Pt	X15901 (Japonica Group chloroplast genome). AF520764-AF520771 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). EF137577 (partial sequence).									
14806	_	ORF42	_				Pt	X15901: CAA34005 (Japonica Group chloroplast genome).									
14807	_	ORF133	_	open reading frame 133			Pt	LOC_Osp1g00430. X15901:CAA34006 (Japonica Group chloroplast genome). AB436286-AB436344 (wild rice species, ORF133-psa1 intergenic region). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00430						
14808	_	ORF85	_				Pt	X15901: CAA33959 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). orf73 in Oryza nivara. 									
14809	_	ORF230, cemA	_	chloroplast envelope membrane protein			Pt	LOC_Osp1g00470. X15901:CAA33960 (Japonica Group chloroplast genome). P12212. GU592207:ADD62843 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). ycf10 in Oryza nivara.			LOC_Osp1g00470				GO:0009706 - chloroplast inner membrane, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0015078 - hydrogen ion transmembrane transporter activity		
14810	_	ORF40, psbJ	_	photosystem II protein J			Pt	LOC_Osp1g00490. X15901: CAA33962 (Japonica Group chloroplast genome). P12189. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00490				GO:0016021 - integral to membrane, GO:0009539 - photosystem II reaction center, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0015979 - photosynthesis		
14811	PSBL	psbL	_	PSII L protein, photosystem II protein L			Pt	X15901:CAA33963 (Japonica Group chloroplast genome). P60137. LOC_Osp1g00500. GU592207:ADD62845 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00500				GO:0009536 - plastid, GO:0009539 - photosystem II reaction center, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane		
14812	_	ORF31, petL	_	cytochrome b6/f complex subunit VI			Pt	X15901: CAA33966 (Japonica Group chloroplast genome). P12180. LOC_Osp1g00530. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00530				GO:0015979 - photosynthesis, GO:0009535 - chloroplast thylakoid membrane, GO:0009512 - cytochrome b6f complex, GO:0055114 - oxidation reduction, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0016021 - integral to membrane, GO:0009536 - plastid		
14813	_	trnW(CCA), trnW, trnW-CCA	_	tRNA-Trp, Trp-tRNA(CCA)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14814	_	trnP(UGG), trnP, trnP-UGG	_	tRNA-Pro, Pro-tRNA(UGG)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14815	_	ORF44, psaJ	_	photosystem I subunit IX			Pt	X15901: CAA33968 (Japonica Group chloroplast genome). P12192. LOC_Osp1g00550. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00550				GO:0009536 - plastid, GO:0009522 - photosystem I, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane		
14816	_	rpl20	_	ribosomal protein L20			Pt	X15901: CAA33971 (Japonica Group chloroplast genome). P12139. LOC_Osp1g00580. FJ908162-FJ908176 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00580				GO:0006412 - translation, GO:0005840 - ribosome, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome		
14817	_	ORF35, psbT	_	photosystem II protein T			Pt	X15901: CAA33974 (Japonica Group chloroplast genome). P69674. LOC_Osp1g00610. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00610				GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0009539 - photosystem II reaction center, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane		
14818	PSBN	psbN, PsbN	PHOTOSYSTEM II PROTEIN N 	PSII low MW protein, photosystem II protein N	PHOTOSYSTEM II PROTEIN N 		Pt	X15901:CAA33975 (Japonica Group chloroplast genome). P68853. LOC_Osp1g00630. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00630				GO:0009536 - plastid, GO:0015979 - photosynthesis, GO:0009539 - photosystem II reaction center, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane		
14819	_	petB	_	cytochrome B6, chloroplast apocytochrome b6			Pt	LOC_Osp1g00640. X15901: CAA33977 (Japonica Group chloroplast genome). P12123. FJ908368-FJ908382 (wild rice species). M35995. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00640				GO:0016021 - integral to membrane, GO:0015979 - photosynthesis, GO:0016491 - oxidoreductase activity, GO:0022904 - respiratory electron transport chain, GO:0020037 - heme binding, GO:0009535 - chloroplast thylakoid membrane, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0005506 - iron ion binding, GO:0009536 - plastid		
14820	RPL36	rpl36	RIBOSOMAL PROTEIN L36	ribosomal protein L36	RIBOSOMAL PROTEIN L36		Pt	X15901:CAA33981 (Japonica Group chloroplast genome). P62727. LOC_Osp1g00680. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00680				GO:0005840 - ribosome, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
14821	_	ORF82	_				Pt	LOC_Osp1g00750. X15901: CAA33936 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). rps12/orf132/orf82 in Oryza nivara.			LOC_Osp1g00750						
14822	_	trnH(GUG), trnH, trnH-GUG	_	tRNA-His, His-tRNA(GUG)			Pt	X15901 (Japonica Group chloroplast genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14823	_	ORF137	_				Pt	LOC_Osp1g00760. X15901: CAA33937 (Japonica Group chloroplast genome). Q36996. AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00760				GO:0009507 - chloroplast, GO:0009536 - plastid		
14824	_	trnI(CAU), trnI, trnI-CAU	_	tRNA-Ile, Ile-tRNA(CAU)			Pt	X15901 (Japonica Group chloroplast genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14825	_	ORF28	_				Pt	LOC_Osp1g00790. X15901: CAA33939 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00790						
14826	_	ORF249	_				Pt	LOC_Osp1g00800. X15901: CAA33940 (Japonica Group chloroplast genome). Q37066. AP006728 (Oryza nivara chloroplast genome). orf222 in Oryza nivara.			LOC_Osp1g00800				GO:0009536 - plastid, GO:0009507 - chloroplast		
14827	_	trnL(CAA), trnL, trnL-CAA, L-CAA	_	tRNA-Leu, Leu-tRNA(CAA)			Pt	X15901 (Japonica Group chloroplast genome).  JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14828	NDHB	ndhB, NDH2, NADH2	NADH DEHYDROGENASE SUBUNIT 2	NADH dehydrogenase subunit 2, NADH dehydrogenase ND2, NADH-plastoquinone oxidoreductase subunit 2, Hydroxylamine reductase	NADH DEHYDROGENASE SUBUNIT 2		Pt	LOC_Osp1g00810. X15901: CAA33941 (Japonica Group chloroplast genome). P0CD23. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00810				GO:0006810 - transport, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0019684 - photosynthesis, light reaction, GO:0042773 - ATP synthesis coupled electron transport, GO:0048038 - quinone binding		
14829	_	ORF72	_				Pt	X15901: CAA33943 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). orf85 in Oryza nivara.									
14830	_	ORF85	_				Pt	LOC_Osp1g00830. X15901: CAA33944 (Japonica Group chloroplast genome). Q32766. AP006728 (Oryza nivara chloroplast genome). orf72 in Oryza nivara.			LOC_Osp1g00830				GO:0009536 - plastid, GO:0009507 - chloroplast		
14831	_	trnV, trnV(GAC), trnV-GAC	_	tRNA-Val, Val-tRNA(GAC)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14832	16S  rRNA	rrn16	16S RIBOSOMAL RNA	16S ribosomal RNA, 16S rRNA, 16S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome). 									
14833	_	trnI(GAU), trnI, trnI-GAU	_	tRNA-Ile, Ile-tRNA(GAU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14834	_	ORF133, ycf68	_	hypothetical chloroplast RF68			Pt	LOC_Osp1g00840. X15901: CAA33945 (Japonica Group chloroplast genome). P12173. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00840				GO:0009536 - plastid, GO:0009507 - chloroplast		
14835	_	trnA(UGC), trnA, trnA-UGC	_	tRNA-Ala, Ala-tRNA(UGC)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14836	23S  rRNA	rrn23	23S RIBOSOMAL RNA	23S ribosomal RNA, 23S rRNA, 23S rDNA			Pt	X15901 (Japonica Group chloroplast genome). U49840. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14837	4.5S  rRNA	rrn4.5	4.5S RIBOSOMAL RNA	4.5S ribosomal RNA, 4.5S rRNA, 4.5S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome).									
14838	5S  rRNA	rrn5	5S RIBOSOMAL RNA	5S ribosomal RNA, 5S rRNA, 5S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome).									
14839	_	trnR(ACG), trnR, trnR-ACG	_	tRNA-Arg, Arg-tRNA(ACG)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14840	_	ORF23	_				Pt	LOC_Osp1g00850. X15901: CAA33946 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00850						
14841	_	trnN(GUU), trnN, trnN-GUU	_	tRNA-Asn, Asn-tRNA(GUU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14842	_	ORF63	_				Pt	LOC_Osp1g00860. X15901: CAA33947 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00860						
14843	_	trnL(UAG), trnL, trnL-UAG	_	tRNA-Leu, Leu-tRNA(UAG)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14844	NDHI	ORF178, ndhI	NADH DEHYDROGENASE SUBUNIT I 	NADH-plastoquinone oxidoreductase subunit I, NADH dehydrogenase subunit I	NADH DEHYDROGENASE SUBUNIT I 		Pt	X15901: CAA33909 (Japonica Group chloroplast genome). P0C385, P0C386. LOC_Osp1g00950. GU592207: ADD62876 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46161: Nip173 (cultivar Nipponbare), AY522331 (isolate PA64S).	 Biochemical character		LOC_Osp1g00950				GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009536 - plastid, GO:0048038 - quinone binding, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0009535 - chloroplast thylakoid membrane, GO:0019684 - photosynthesis, light reaction, GO:0005506 - iron ion binding		
14845	NDHA	ndhA	NADH DEHYDROGENASE SUBUNIT 1	NADH dehydrogenase subunit 1, NADH dehydrogenase ND1, NADH-plastoquinone oxidoreductase subunit 1	NADH DEHYDROGENASE SUBUNIT 1		Pt	LOC_Osp1g00960. X15901:CAA33910 (Japonica Group chloroplast genome). P12124. FJ908270-FJ908284 (wild rice species). GU592207:ADD62877 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).  AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: Nip174 (cultivar Nipponbare), AY522331 (isolate PA64S). 	 Biochemical character		LOC_Osp1g00960				GO:0009535 - chloroplast thylakoid membrane, GO:0048038 - quinone binding, GO:0019684 - photosynthesis, light reaction, GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, GO:0016021 - integral to membrane, GO:0009536 - plastid		
14846	_	ORF63	_				Pt	LOC_Osp1g00990. X15901: CAA33913 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00990						
14847	_	trnN(GUU), trnN, trnN-GUU	_	tRNA-Asn, Asn-tRNA(GUU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14848	_	ORF23	_				Pt	LOC_Osp1g01000. X15901: CAA33914 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g01000						
14849	_	trnR(ACG), trnR, trnR-ACG	_	tRNA-Arg, Arg-tRNA(ACG)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14850	5S  rRNA	rrn5	5S RIBOSOMAL RNA	5S ribosomal RNA, 5S rRNA, 5S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome).									
14851	4.5S  rRNA	rrn4.5	4.5S RIBOSOMAL RNA	4.5S ribosomal RNA, 4.5S rRNA, 4.5S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome).									
14852	23S  rRNA	rrn23	23S RIBOSOMAL RNA	23S ribosomal RNA, 23S rRNA, 23S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14853	_	trnA(UGC), trnA, trnA-UGC	_	tRNA-Ala, Ala-tRNA(UGC)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14854	_	trnI(GAU), trnI, trnI-GAU	_	tRNA-Ile, Ile-tRNA(GAU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14855	_	ORF133, ycf68	_	hypothetical chloroplast RF68			Pt	X15901: CAA33915 (Japonica Group chloroplast genome). P12173. LOC_Osp1g01010. ORF within trnI intron. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g01010				GO:0009536 - plastid, GO:0009507 - chloroplast		
14856	16S  rRNA	rrn16	16S RIBOSOMAL RNA	16S ribosomal RNA, 16S rRNA, 16S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14857	_	trnV, trnV(GAC), trnV-GAC	_	tRNA-Val, Val-tRNA(GAC)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14858	_	ORF85	_				Pt	LOC_Osp1g01020. X15901: CAA33916 (Japonica Group chloroplast genome). Q32766. AP006728 (Oryza nivara chloroplast genome). orf72 in Oryza nivara.			LOC_Osp1g01020				GO:0009507 - chloroplast, GO:0009536 - plastid		
14859	_	ORF72	_				Pt	LOC_Osp1g01030. X15901: CAA33917 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). orf85 in Oryza nivara.			LOC_Osp1g01030						
14860	3'RPS12	3'rps12, 3'-rps12, rps12	RIBOSOMAL PROTEIN S12	ribosomal protein S12	RIBOSOMAL PROTEIN S12		Pt	LOC_Osp1g01040. X15901: CAA33918 (Japonica Group chloroplast genome). P12149. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g01040				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0019843 - rRNA binding, GO:0015935 - small ribosomal subunit		
14861	NDHB	ndhB	NADH DEHYDROGENASE SUBUNIT 2	NADH dehydrogenase subunit 2, NADH dehydrogenase ND2, NADH-plastoquinone oxidoreductase subunit 2	NADH DEHYDROGENASE SUBUNIT 2		Pt	LOC_Osp1g01060. X15901:CAA33920 (Japonica Group chloroplast genome). P0CD22. GU592207:ADD62881 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g01060				GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0009535 - chloroplast thylakoid membrane, GO:0042773 - ATP synthesis coupled electron transport, GO:0016021 - integral to membrane, GO:0019684 - photosynthesis, light reaction, GO:0048038 - quinone binding, GO:0006810 - transport		
14862	_	trnL(CAA), trnL, trnL-CAA	_	tRNA-Leu, Leu-tRNA(CAA)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14863	_	ORF249	_				Pt	X15901: CAA33921 (Japonica Group chloroplast genome). Q37066. LOC_Osp1g01070. AP006728 (Oryza nivara chloroplast genome). orf222 in Oryza nivara.			LOC_Osp1g01070				GO:0009507 - chloroplast, GO:0009536 - plastid		
14864	_	ORF28	_				Pt	LOC_Osp1g01080. X15901: CAA33922 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g01080						
14865	_	trnI(CAU), trnI, trnI-CAU	_	tRNA-Ile, Ile-tRNA(CAU)			Pt	X15901 (Japonica Group chloroplast genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14866	_	ORF137	_				Pt	LOC_Osp1g01110. X15901: CAA33925 (Japonica Group chloroplast genome). Q36996. AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g01110				GO:0009507 - chloroplast, GO:0009536 - plastid		
14867	_	ORF82	_				Pt	LOC_Osp1g01120. X15901: CAA33926 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). orf132 in Oryza nivara.			LOC_Osp1g01120						
14868	_	trnH(GUG), trnH, trnH-GUG	_	tRNA-His, His-tRNA(GUG)			Pt	X15901 (Japonica Group chloroplast genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14869	RPS19	rps19	RIBOSOMAL PROTEIN S19	ribosomal protein S19	RIBOSOMAL PROTEIN S19		Pt	LOC_Osp1g01130. X15901:CAA33927 (Japonica Group chloroplast genome). P12153. FJ908434-FJ908448 (wild rice species). GU592207:ADD62884 (Japonica chloroplast comlete genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). AY522329 (isolate 93-11 chloroplast comlete genome), AY522331 (isolate PA64S).	 Other		LOC_Osp1g01130				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0015935 - small ribosomal subunit, GO:0009536 - plastid, GO:0009507 - chloroplast		
14870	26S  rRNA	rrn26	26S RIBOSOMAL RNA	26S ribosomal RNA, 26S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14871	RPOC1	rpoC1	RNA POLYMERASE C1		RNA POLYMERASE C1		Mt		 Biochemical character								
14872	RPOC2.P	rpoC2.p, rpoC2	RNA POLYMERASE C2 PSEUDOGENE		RNA POLYMERASE C2 PSEUDOGENE		Mt	D13110 (a transferred chloroplast DNA sequence).									
14873	_	atpH, atpH.p	_	ATP synthase CF0 C chain pseudogene, ATPase III subunit pseudogene			Mt	D13098 (a transferred chloroplast DNA sequence).	 Biochemical character								
14874	_	atpA, atpA.p	_	ATP synthase CF1 alpha chain pseudogene, ATPase alpha subunit pseudogene			Mt	D13099 (a transferred chloroplast DNA sequence).	 Biochemical character								
14875	_	trnL	_	tRNA-Leu			Mt	D13112 (a transferred chloroplast DNA sequence).									
14876	_	ORF159	_				Mt	D13112 (a transferred chloroplast DNA sequence).									
14877	NDHK	ndhK	NADH DEHYDROGENASE SUBUNIT 11	NADH dehydrogenase subunit 11, NADH dehydrogenase ND11	NADH DEHYDROGENASE SUBUNIT 11		Mt		 Biochemical character								
14878	RPL23.P	rpl23.p	RIBOSOMAL PROTEIN L23 PSEUDOGENE	ribosomal protein L23 pseudogene			Mt	D13101 (a transferred chloroplast DNA sequence contains rpl23 pseudogene).									
14879	_	ORF85	_				Mt	D13103 (a transferred chloroplast DNA sequence).									
14880	CLPP.P	ClpP, ClpP.p	CHLOROPLAST PROTEASE PSEUDOGENE	plastidic caseinolytic protease pseudogene, chloroplast Clp pseudogene			Mt	D13103 (a transferred chloroplast DNA sequence).									
14881	_	petB, petB.p	_	cytochrome B6 pseudogene			Mt	D13104 (a transferred chloroplast DNA sequence).									
14882	RPL14.P	rpl14, rpl14.p	RIBOSOMAL PROTEIN L14 PSEUDOGENE	ribosomal protein L14 pseudogene			Mt	D13105 (a transferred chloroplast DNA sequence).	 Other								
14884	NDHE	ndhE	NADH DEHYDROGENASE SUBUNIT 4L	NADH dehydrogenase subunit 4L, NADH dehydrogenase ND4L	NADH DEHYDROGENASE SUBUNIT 4L		Mt	D13108 (a transferred chloroplast DNA sequence).									
14885	NDHG	ndhG	NADH DEHYDROGENASE SUBUNIT 6	NADH dehydrogenase subunit 6, NADH dehydrogenase ND6	NADH DEHYDROGENASE SUBUNIT 6		Mt	D13108 (a transferred chloroplast DNA sequence).									
14888	RPS4	rps4	S4 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME	S4 subunit of the mitochondrial ribosome, Ribosomal protein S4	S4 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME		Mt	D13112 (a transferred chloroplast DNA sequence).									
14889	RPS19.P	rps19, rps19.p	RIBOSOMAL PROTEIN S19 PSEUDOGENE	ribosomal protein S19 pseudogene			Mt	D13101 (a transferred chloroplast DNA sequence contains rps19 pseudogene).									
14890	_	trnV(GAC), trnV	_	tRNA-Val			Mt	D13103 (a transferred chloroplast DNA sequence).									
14895	_	Rrt1	_	rice retrotransposon 1				Copia-like retrotransposon. Z75496.	 Other								
14896	_	Rrt2	_	rice retrotransposon 2			3	Copia-like retrotransposon. Z75497.	 Other								
14897	_	Rrt3	_	rice retrotransposon 3				Copia-like retrotransposon. Z75498.	 Other								
14898	_	Rrt4	_	rice retrotransposon 4				Copia-like retrotransposon. Z75499.	 Other								
14899	_	Rrt5	_	rice retrotransposon 5				Copia-like retrotransposon. Z75500.	 Other								
14900	_	Rrt6	_	rice retrotransposon 6				Copia-like retrotransposon. Z75501.	 Other								
14901	_	Rrt7	_	rice retrotransposon 7				Copia-like retrotransposon. Z75502.	 Other								
14902	_	Rrt8	_	rice retrotransposon 8				Copia-like retrotransposon. Z75503.	 Other								
14903	_	Rrt9	_	rice retrotransposon 9				Copia-like retrotransposon. Z75504.	 Other								
14904	_	Rrt10	_	rice retrotransposon 10				Copia-like retrotransposon. Z75505.	 Other								
14905	_	Rrt11	_	rice retrotransposon 11			3	Copia-like retrotransposon. Z75506.	 Other								
14906	_	Rrt12	_	rice retrotransposon 12				Copia-like retrotransposon. Z75507.	 Other								
14907	_	Rrt13	_	rice retrotransposon 13				Copia-like retrotransposon. Z75508.	 Other								
14908	_	Rrt14	_	rice retrotransposon 14				Copia-like retrotransposon. Z75509.	 Other								
14909	_	Rrt15	_	rice retrotransposon 15				Copia-like retrotransposon. Z75510.	 Other								
14910	_	Rrt16	_	rice retrotransposon 16				Copia-like retrotransposon. Z75511.	 Other								
14911	_	Rrt17	_	rice retrotransposon 17				Copia-like retrotransposon. Z75512.	 Other								
14912	_	Rrt18	_	rice retrotransposon 18				Copia-like retrotransposon. Z75513.	 Other								
14913	_	Rrt19	_	rice retrotransposon 19				Copia-like retrotransposon. Z75514.	 Other								
14914	_	Rrt20	_	rice retrotransposon 20				Copia-like retrotransposon. Z75515.	 Other								
14915	_	Rrt21	_	rice retrotransposon 21				Copia-like retrotransposon. Z75516.	 Other								
14916	_	Rrt22A	_	rice retrotransposon 22A			9	Copia-like retrotransposon. Z75517.	 Other								
14917	_	Rrt22B	_	rice retrotransposon 22B			8	Copia-like retrotransposon. Z75517.	 Other								
14918	_	Rrt22C	_	rice retrotransposon 22C			4	Copia-like retrotransposon. Z75517.	 Other								
14919	_	Rrt23	_	rice retrotransposon 23				Copia-like retrotransposon. Z75518.	 Other								
14920	_	RILN1	_	RIce LiNe No. 1				LINE retrotransposon. AB016096.	 Other								
14921	_	RILN2	_	RIce LiNe No. 2				LINE retrotransposon. AB016097.	 Other								
14922	_	RILN3	_	RIce LiNe No. 3				LINE retrotransposon. AB016098.	 Other								
14923	_	RILN4	_	RIce LiNe No. 4			9	LINE retrotransposon. AB016099.	 Other								
14924	_	RILN5	_	RIce LiNe No. 5				LINE retrotransposon. AB016100. chromosome 1, 3, 6 and 8.	 Other								
14925	_	RILN6	_	RIce LiNe No. 6				LINE retrotransposon. AB016101.	 Other								
14926	_	RILN7	_	RIce LiNe No. 7				LINE retrotransposon. AB016102.	 Other								
14927	_	RILN8	_	RIce LiNe No. 8				LINE retrotransposon. AB016103.	 Other								
14928	_	RILN9	_	RIce LiNe No. 9				LINE retrotransposon. AB016104.	 Other								
14929	_	RILN10	_	RIce LiNe No. 10				LINE retrotransposon. AB016105.	 Other								
14930	_	RILN11	_	RIce LiNe No. 11				LINE retrotransposon. AB016106.	 Other								
14931	_	RILN12	_	RIce LiNe No. 12				LINE retrotransposon. AB016107.	 Other								
14932	_	RILN13	_	RIce LiNe No. 13				LINE retrotransposon. AB016108.	 Other								
14933	_	RILN14	_	RIce LiNe No. 14				LINE retrotransposon. AB016109.	 Other								
14936	_	Retrosat1	_	Retrosat 1 retrotransposon				a gypsy-like retroelement. AF111709.	 Other						GO:0032196 - transposition		
14937	_	hipa	_	CACTA-like transposon HIPA			1	a CACTA-like transposon. AP002484: 15798-26337. AF537367.	 Other						GO:0032196 - transposition		
14938	_	houba	_	houba copia-like retrotransposon			10	a copia-like retroelement. AC087192: 88449-94870. AF537365.	 Other						GO:0032196 - transposition		
14939	_	hopi	_	hopi retrotransposon			1	a gypsy-like retroelement. AP000837: 63988-76831. AF537364.	 Other						GO:0032196 - transposition		
14940	_	dagul	_	dagul gypsy-type retrotransposon			1	a gypsy-like retroelement. AP003734: 60406-73828. AF537366.	 Other						GO:0032196 - transposition		
14941	_	A	_	ORF A, ORF1				an ORF in Ping. AB087616. BAC15770. BK000587. DAA00399. 									
14942	_	B	_	ORF B, ORF2				an ORF in Ping. AB087616. BAC15770. BK000587. DAA00400. 	 Biochemical character						GO:0016788 - hydrolase activity, acting on ester bonds		
14943	25S rRNA	25S rRNA	25S RIBOSOMAL RNA	25S RIBOSOMAL RNA			9	AP008245, AP009051.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
14944	18S rRNA	18S rRNA	18S RIBOSOMAL RNA	18S RIBOSOMAL RNA			9	AP008245, AP009051.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14945	5.8S rRNA	5.8S rRNA	5.8S RIBOSOMAL RNA	5.8S RIBOSOMAL RNA			9	AP008245, AP009051.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14946	_		_				1	an NBS-LRR class R-gene. EF642193-EF642213 (O. sativa, O. rufipogon, O. nivara). FJ709741-FJ709751 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os01g0335700	LOC_Os01g23380.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14947	_		_				7	an NBS-LRR class R-gene. EF642468-EF642487 (O. sativa, O. rufipogon, O. nivara). FJ709910-FJ709920 (O. sativa, O. rufipogon, O. glumipatula). LOC_Os07g29820. R Gene present in both Nipponbare and 9311. EF533750-EF533756 (partial cds).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0481400	LOC_Os07g29820.1				GO:0005524 - ATP binding, GO:0043531 - ADP binding, GO:0017111 - nucleoside-triphosphatase activity, GO:0006952 - defense response		
14948	_		_				2	an NBS-LRR class R-gene. EF642444-EF642462 (O. sativa, O. rufipogon, O. nivara). FJ709771-FJ709782 (O. sativa, O. rufipogon, O. glumipatula). LOC_Os02g25900. R Gene present in both Nipponbare and 9311.  EF533729-EF533734 (partial cds).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0456800	LOC_Os02g25900.2, LOC_Os02g25900.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14949	_		_				1	an NBS-LRR class R-gene. EF642235-EF642256 (O. sativa, O. rufipogon, O. nivara). FJ710017-FJ710025 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os01g0953200	LOC_Os01g72390.1						
14950	_		_				1	an NBS-LRR class R-gene. EF642151-EF642171 (O. sativa, O. rufipogon, O. nivara). FJ709726-FJ709740 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os01g0269700	LOC_Os01g16390.1				GO:0043531 - ADP binding		
14951	_		_				1	an NBS-LRR class R-gene. EF642172-EF642192 (O. sativa, O. rufipogon, O. nivara). FJ709996-FJ710006 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os01g0269800	LOC_Os01g16400.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14952	_		_				1	an NBS-LRR class R-gene. EF642214-EF642234 (O. sativa, O. rufipogon, O. nivara). FJ710007-FJ710016 (O. sativa, O. rufipogon, O. glumipatula).  LOC_Os01g33690 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Tolerance and resistance - Stress tolerance	Os01g0520600					GO:0043531 - ADP binding		
14953	_		_				8	an NBS-LRR class R-gene. EF642338-EF642358 (O. sativa, O. rufipogon, O. nivara). FJ709971-FJ709980 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os08g0193700	LOC_Os08g09430.1						
14954	_		_				6	an NBS-LRR class R-gene. EF642285-EF642296 (O. sativa, O. rufipogon, O. nivara). FJ709800-FJ709819  (O. sativa, O. rufipogon, O. glumipatula). 	 Tolerance and resistance - Stress tolerance	Os06g0158300	LOC_Os06g06380.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14955	_		_				6	an NBS-LRR class R-gene. EF642297-EF642308 (O. sativa, O. rufipogon, O. nivara). FJ709820-FJ709839 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os06g0158400	LOC_Os06g06390.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14956	_		_	NBS-LRR-type disease resistance protein			6	LOC_Os06g06400. an NBS-LRR class R-gene. EF642309-EF642320 (O. sativa, O. rufipogon, O. nivara). FJ709840-FJ709859 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os06g0158500	LOC_Os06g06400.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14957	_		_				6	an NBS-LRR class R-gene. EF642321-EF642337 (O. sativa, O. rufipogon, O. nivara). LOC_Os06g48520. FJ710026-FJ710042 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os06g0698802/Os06g0698812							
14958	_	PIC22	_	resistance gene analog PIC22			4	an NBS-LRR class R-gene. EF642270-EF642284 (O. sativa, O. rufipogon, O. nivara). FJ709783-FJ709799 (O. sativa, O. rufipogon, O. glumipatula). AF146269.	 Tolerance and resistance - Stress tolerance	Os04g0111900	LOC_Os04g02110.3, LOC_Os04g02110.2, LOC_Os04g02110.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14959	_		_				2	an NBS-LRR class R-gene. EF642257-EF642269 (O. sativa, O. rufipogon, O. nivara). LOC_Os02g18510. FJ709752-FJ709770 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os02g0286700/Os02g0286850					GO:0015996 - chlorophyll catabolic process, GO:0043531 - ADP binding, GO:0047746 - chlorophyllase activity		
14960	_		_				12	an NBS-LRR class R-gene. EF642402-EF642417 (O. sativa, O. rufipogon, O. nivara). FJ709658-FJ709677 (O. sativa, O. rufipogon, O. glumipatula). LOC_Os12g28250. R Gene present in both Nipponbare and 9311. EF533787-EF533791 (partial cds).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0468300	LOC_Os12g28250.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14961	_		_				12	an NBS-LRR class R-gene. EF642387-EF642401 (O. sativa, O. rufipogon, O. nivara). LOC_Os12g09730 (not found in MSU Rice Genome Annotation Project Release 7 data). R Gene present in Nipponbare only. (not in 9311).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0199100							
14962	_		_				10	an NBS-LRR class R-gene. EF642359-EF642369 (O. sativa, O. rufipogon, O. nivara). LOC_Os10g04674. R Gene present in Nipponbare only. (not in 9311). EF533757-EF533764 (O. sativa and O. rufipogon,partial cds). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0136100	LOC_Os10g04674.3, LOC_Os10g04674.2, LOC_Os10g04674.1				GO:0043531 - ADP binding		
14963	_		_				11	an NBS-LRR class R-gene. EF642377-EF642386 (O. sativa, O. rufipogon, O. nivara). R Gene present in Nipponbare only. (not in 9311). LOC_Os11g45330. EF533769-EF533776  (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0678400	LOC_Os11g45330.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14964	_		_				12	an NBS-LRR class R-gene. EF642418-EF642421 (O. sativa, O. rufipogon, O. nivara). R Gene present in Nipponbare only. (not in 9311). LOC_Os12g31620. EF533792, EF533793.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0500500	LOC_Os12g31620.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14965	_		_				6	an NBS-LRR class R-gene. EF642463-EF642467 (O. sativa, O. rufipogon, O. nivara). R Gene present in Nipponbare only. (not in 9311). LOC_Os06g16790. EF533747-EF533749 (partial cds).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0279900	LOC_Os06g16790.1				GO:0006952 - defense response, GO:0017111 - nucleoside-triphosphatase activity, GO:0043531 - ADP binding, GO:0005524 - ATP binding		
14966	_		_				11	an NBS-LRR class R-gene. EF642370-EF642376 (O. sativa, O. rufipogon, O. nivara). LOC_Os11g11550. R Gene present in Nipponbare only. (not in 9311). EF533765-EF533768 (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0222900	LOC_Os11g11550.2, LOC_Os11g11550.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14967	_		_				7	an NBS-LRR class R-gene. FJ709921-FJ709970 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os07g0599100	LOC_Os07g40810.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14968	_		_				7	an NBS-LRR class R-gene. FJ709860-FJ709909 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os07g0186500	LOC_Os07g08890.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14969	_		_				10	an NBS-LRR class R-gene. 	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os10g0370100	LOC_Os10g22484.3, LOC_Os10g22484.2, LOC_Os10g22484.1				GO:0043531 - ADP binding, GO:0010229 - inflorescence development, GO:0006952 - defense response	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
14970	_	Vatp, OsSTA154	_	V-ATPase B-subunit, p-VATPase			5	AM179944-AM179987 (O. sativa, O. rufipogon). LOC_Os05g40900. a mature anther-preferentially expressed gene. This is one of the four genes within the candidate gene region on chromosome 5 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0487600	LOC_Os05g40900.2, LOC_Os05g40900.1						PO:0009066 - anther 
14971	DART01	Dart01	DNA-BASED ACTIVE RICE TRANSPOSON 01	DNA-based active rice transposon 01			6	AB442145, AB443429	 Other						GO:0032196 - transposition		
14972	DART02	Dart02	DNA-BASED ACTIVE RICE TRANSPOSON 02	DNA-based active rice transposon 02				AB442146-AB442154.	 Other						GO:0032196 - transposition		
14973	DART28	Dart28	DNA-BASED ACTIVE RICE TRANSPOSON 28	DNA-based active rice transposon 28			10		 Other						GO:0032196 - transposition		
14974	_		_	Tpase, transposase				AB442145-AB442154, AB443429.	 Other						GO:0003677 - DNA binding		
14975	_	rpoC2	_	RNA polymerase C2, RNA polymerase beta'' chain, RNA polymerase beta subunit			Pt	GU592207:ADD62826 (Japonica chloroplast comlete genome).  AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46113: Nip038 (cultivar Nipponbare), AY522331 (isolate PA64S). 							GO:0009507 - chloroplast		
14976	_	psbN	_	photosystem II protein N			Pt	GU592207:ADD62852 (Japonica chloroplast comlete genome).							GO:0009507 - chloroplast		
14978	_	rpl2	_	ribosomal protein L2			Pt	GU592207:ADD62883 (Japonica chloroplast comlete genome). AY522330: AAS46166: Nip216b (cultivar Nipponbare), AY522331: AAS46229 (isolate PA64S).	 Other						GO:0005840 - ribosome, GO:0009507 - chloroplast		
14979	_	NP39	_	Copia-like retroelement pol polyprotein			9	FJ811207-FJ811247 (Oryza glaberrima, Oryza barthii, Oryza nivara).		Os09g0267600	LOC_Os09g09480.3, LOC_Os09g09480.2, LOC_Os09g09480.1				GO:0015031 - protein transport		
14980	_	NP122	_	Rubredoxin-type Fe(Cys)4 protein family protein			8	FJ811166-FJ811206 (Oryza glaberrima, Oryza barthii, Oryza nivara).		Os08g0162600	LOC_Os08g06530.1				GO:0005506 - iron ion binding		
14981	_	NP1977, OsVDAC8, VDAC8, Os1977	_	eukaryotic type Porin family protein, voltage-dependent anion channel 8			3	FJ811289-FJ811329 (Oryza glaberrima, Oryza barthii, Oryza nivara). LOC_Os03g20750.		Os03g0323800	LOC_Os03g20750.1				GO:0005741 - mitochondrial outer membrane, GO:0055085 - transmembrane transport		
14982	_	Os0053, OsGL1-6	_	Glossy1-homologous gene 6			2	Putative aldehyde decarbonylase. FJ811248-FJ811288 (Oryza glaberrima, Oryza barthii, Oryza nivara). EF069573-EF069641 (O. sativa and wild rice species).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0814200	LOC_Os02g56920.1				GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0010025 - wax biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0009414 - response to water deprivation, GO:0005783 - endoplasmic reticulum, GO:0005506 - iron ion binding	TO:0000276 - drought tolerance, TO:0000709 - leaf gloss	
14983	_	CP, OsSAG12-2, SAG12-2	_	Cys protease, cysteine protease, senescence-associated gene 12-2	_		8	a Homologue of AtSAG12. cysteine proteinase EP-B 1. LOC_Os08g44270. the second closest homologue of AtSAG12.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os08g0556900	LOC_Os08g44270.1				GO:0009411 - response to UV, GO:0008219 - cell death, GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity, GO:0009651 - response to salt stress, GO:0010150 - leaf senescence	TO:0000160 - UV light sensitivity, TO:0000249 - leaf senescence, TO:0006001 - salt tolerance	
14984	_		_		_		1	a Homologue of AtSAG12. cysteine proteinase 2.	 Biochemical character	Os01g0971400	LOC_Os01g73980.2, LOC_Os01g73980.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
14985	_		_		_		5	a Homologue of AtSAG12. cysteine proteinase 2.	 Biochemical character	Os05g0108600	LOC_Os05g01810.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
14986	_		_		_		1	a Homologue of AtSAG12. cysteine proteinase 2.	 Biochemical character	Os01g0613800	LOC_Os01g42790.1				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
14987	_		_		_		3	a Homologue of AtSAG12.  cysteine protease 1.	 Biochemical character	Os03g0752500	LOC_Os03g54130.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
14988	_		_		_		12	a Homologue of AtSAG12. vignain.	 Biochemical character	Os12g0273800	LOC_Os12g17540.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
14989	_	OsSAG12, SAG12	_	senescence-associated gene 12	_		4	a Homologue of AtSAG12. vignain.	 Biochemical character,  Vegetative organ - Leaf	Os04g0208200	LOC_Os04g13140.1				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
14990	_		_		_		7	a Homologue of AtSAG12. LOC_Os07g01800. cysteine proteinase EP-B.	 Biochemical character		LOC_Os07g01800				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
14991	_	OsCTR2, CTR2	_	CONSTITUTIVE TRIPLE-RESPONSE2		osctr2	2	LOC_Os02g32610.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os02g0527600 	LOC_Os02g32610.4, LOC_Os02g32610.3, LOC_Os02g32610.2				GO:0048573 - photoperiodism, flowering, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009723 - response to ethylene stimulus, GO:0009873 - ethylene mediated signaling pathway	TO:0000137 - days to heading, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0002616 - flowering time, TO:0000173 - ethylene sensitivity	
14992	_	OsCTR1, CTR1	_	CONSTITUTIVE TRIPLE-RESPONSE1, CONSTITUTIVE TRIPLE RESPONSE 1			9	LOC_Os09g39320. EAZ45706.	 Biochemical character	Os09g0566550	LOC_Os09g39320.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14993	_	OsCTR3, CTR3	_	CONSTITUTIVE TRIPLE-RESPONSE3			4	LOC_Os04g52140.	 Biochemical character	Os04g0610900 	LOC_Os04g52140.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14994	_	OsG6PDH1	_	d-glucose 6-phosphate dehydrogenase 1			2		 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0600400	LOC_Os02g38840.2, LOC_Os02g38840.1				GO:0006098 - pentose-phosphate shunt, GO:0050661 - NADP or NADPH binding, GO:0004345 - glucose-6-phosphate dehydrogenase activity		
14995	_	OsG6PDH2, OsG6PDH1, OsG6PDH	_	d-glucose 6-phosphate dehydrogenase 2, Glucose-6-phosphate dehydrogenase 1, cytosolic G6PDH			4	AY078072. OsG6PDH1 in Hou et al. 2007.	 Biochemical character	Os04g0485300	LOC_Os04g40874.1				GO:0006098 - pentose-phosphate shunt, GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0050661 - NADP or NADPH binding		
14996	_	OsG6PDH3, OsG6PDH2	_	d-glucose 6-phosphate dehydrogenase 3, Glucose-6-phosphate dehydrogenase 2, plastidic G6PDH			7	AY339367. OsG6PDH2 in Hou et al. 2006 and 2007.	 Biochemical character	Os07g0406300	LOC_Os07g22350.1				GO:0050661 - NADP or NADPH binding, GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0006098 - pentose-phosphate shunt		
14997	_	OsG6PDH4	_	d-glucose 6-phosphate dehydrogenase 4			3		 Biochemical character	Os03g0412800	LOC_Os03g29950.2, LOC_Os03g29950.1				GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0050661 - NADP or NADPH binding, GO:0006098 - pentose-phosphate shunt		
14998	_	OsG6PDH5, G6PDH5	_	d-glucose 6-phosphate dehydrogenase 5, glucose-6-phosphate dehydrogenase 4			3	LOC_Os03g20300. glucose-6-phosphate dehydrogenase 4 in Wang et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0318500	LOC_Os03g20300.3, LOC_Os03g20300.2, LOC_Os03g20300.1				GO:0006098 - pentose-phosphate shunt, GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0009635 - response to herbicide, GO:0050661 - NADP or NADPH binding	TO:0000058 - herbicide sensitivity	
14999	_	OsVOZ2	_	vascular plant one zinc finger protein 2			5		 Tolerance and resistance - Disease resistance	Os05g0515700	LOC_Os05g43950.1						
15000	NAC58	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1	NAC DOMAIN-CONTAINING PROTEIN 58	NAC Family Transcription Factor OsNAP, NAC domain-containing protein 058, NAC domain-containing protein 58, prematurely senile 1	NAC DOMAIN-CONTAINING PROTEIN 58	ps1-D	3	OsNAP acts as a positive regulator of leaf senescence and this regulation may occur via the JA pathway (Zhou et al. 2013).	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0327800	LOC_Os03g21060.1				GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010150 - leaf senescence, GO:0015996 - chlorophyll catabolic process	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0002668 - jasmonic acid content, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
15001	_	OslecRK	_	lectin receptor-like kinase, lectin receptor kinase			4	KC131131.							GO:0003676 - nucleic acid binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15002	PUP1	OsPUP1	PURINE PERMEASE 1	purine permease 1, PUP-type cytokinin transporter 1	PURINE PERMEASE 1		3		 Biochemical character	Os03g0187800	LOC_Os03g08880.1				GO:0016021 - integral to membrane		
15003	PUP2	OsPUP2	PURINE PERMEASE 2	purine permease 2, PUP-type cytokinin transporter 2	PURINE PERMEASE 2		9		 Biochemical character	Os09g0467300	LOC_Os09g29210.2, LOC_Os09g29210.1				GO:0016021 - integral to membrane		
15004	PUP3	OsPUP3	PURINE PERMEASE 3	purine permease 3, PUP-type cytokinin transporter 3	PURINE PERMEASE 3		9		 Biochemical character	Os09g0467400	LOC_Os09g29239.3, LOC_Os09g29239.2, LOC_Os09g29239.1				GO:0016021 - integral to membrane		
15005	PUP4	OsPUP4, BG3/OsPUP4, BG3, OsBG3	PURINE PERMEASE 4	purine permease 4, PUP-type cytokinin transporter 4, Big Grain3	PURINE PERMEASE 4	bg3-D, ospup4-1, ospup4-2	1	LOC_Os01g48800. TO:0000975: grain width.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os01g0680200	LOC_Os01g48800.1				GO:0010184 - cytokinin transport, GO:0048573 - photoperiodism, flowering, GO:0048366 - leaf development, GO:0016021 - integral to membrane, GO:0009735 - response to cytokinin stimulus, GO:0005886 - plasma membrane	TO:0000180 - spikelet fertility, TO:0000734 - grain length, TO:0000135 - leaf length, TO:0000397 - grain size, TO:0002759 - grain number, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000567 - tiller angle, TO:0000447 - filled grain number, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000167 - cytokinin sensitivity, TO:0002660 - cytokinin content, TO:0000655 - leaf development trait, TO:0000592 - 1000-dehulled grain weight, TO:0000399 - grain thickness	PO:0009015 - portion of vascular tissue 
15006	PUP5	OsPUP5	PURINE PERMEASE 5	purine permease 5, PUP-type cytokinin transporter 5	PURINE PERMEASE 5		9		 Biochemical character	Os09g0557500	LOC_Os09g38510.1						
15007	PUP6	OsPUP6	PURINE PERMEASE 6	purine permease 6, PUP-type cytokinin transporter 6	PURINE PERMEASE 6		4		 Biochemical character	Os04g0587400	LOC_Os04g49748.1				GO:0016021 - integral to membrane		
15008	PUP7	OsPUP7	PURINE PERMEASE 7	purine permease 7, PUP-type cytokinin transporter 7	PURINE PERMEASE 7	ospup7, ospup7-1, ospup7-2	5	the closest homolog of OsPUP4.	 Biochemical character,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os05g0556800	LOC_Os05g48300.1				GO:0051302 - regulation of cell division, GO:0010184 - cytokinin transport, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane	TO:0000397 - grain size, TO:0000135 - leaf length, TO:0000567 - tiller angle, TO:0002759 - grain number	PO:0009015 - portion of vascular tissue 
15009	PUP8	OsPUP8	PURINE PERMEASE 8	purine permease 8, PUP-type cytokinin transporter 8	PURINE PERMEASE 8		1		 Biochemical character	Os01g0504100	LOC_Os01g31940.1				GO:0016021 - integral to membrane		
15010	PUP10	OsPUP10	PURINE PERMEASE 10	purine permease 10, PUP-type cytokinin transporter 10	PURINE PERMEASE 10		4		 Biochemical character	Os04g0587300	LOC_Os04g49739.1				GO:0016021 - integral to membrane		
15011	PUP11	OsPUP11	PURINE PERMEASE 11	purine permease 11, PUP-type cytokinin transporter 11	PURINE PERMEASE 11		2		 Biochemical character	Os02g0689200	LOC_Os02g46380.3, LOC_Os02g46380.2, LOC_Os02g46380.1				GO:0016021 - integral to membrane		
15012	PUP12	OsPUP12	PURINE PERMEASE 12	purine permease 12, PUP-type cytokinin transporter 12	PURINE PERMEASE 12		9		 Biochemical character	Os09g0548600	LOC_Os09g37640.1						
15013	PUP13	OsPUP13	PURINE PERMEASE 13	purine permease 13, PUP-type cytokinin transporter 13	PURINE PERMEASE 13		4	 LOC_Os04g49757.	 Biochemical character	Os04g0587451/Os04g0587500					GO:0016021 - integral to membrane		
15014	AN1	An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1	AWN1	Awn-1, basic helix-loop-helix protein 093, Regulatory of awn elongation 1, REGULATOR OF AWN ELONGATION 1, Regulator of Awn Elongation 1, Awn4-2		an-1	4	a bHLH transcription factor. An-1 regulates the formation of awn primordial (Gu et al. 2015). Awn4-2 in Li et al. 2016. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os04g0350700	LOC_Os04g28280.1					TO:0000447 - filled grain number, TO:0000734 - grain length, TO:0002734 - awn presence, TO:0000072 - awn length	PO:0025349 - awn 
15016	_	OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63	_	myb transcription factor 58/63, transcription factor MYB58/63			4		 Other	Os04g0594100	LOC_Os04g50770.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0005634 - nucleus		
15017	_	OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61	_	myb transcription factor 55/61, transcription factor MYB55/61			1	LOC_Os01g18240. MYB61 in Huang et al. 2015, Ye et al. 2018. a CESA regulator. GO:2001006: regulation of cellulose biosynthetic process.	 Other	Os01g0285300	LOC_Os01g18240.1				GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0003677 - DNA binding		
15018	_	OsMYB42/85, MYB42/85	_	myb transcription factor 42/85, transcription factor MYB42/85			9	R2R3-MYB. AY459343, CB676151. AJ311053. LOC_Os09g36250. GO:1901141: regulation of lignin biosynthetic process.	 Other	Os09g0532900	LOC_Os09g36260.1, LOC_Os09g36250.1				GO:0003677 - DNA binding, GO:0009834 - secondary cell wall biogenesis, GO:0009809 - lignin biosynthetic process, GO:0003682 - chromatin binding, GO:0005634 - nucleus		
15019	CEF1	OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L	CULM EASILY FRAGILE 1	myb transcription factor 103, transcription factor MYB103, Oryza sativa MYB103 Like, culm easily fragile 1		cef1	8	LOC_Os08g05520. closely related to AtMYB103. GO:2001006: regulation of cellulose biosynthetic process.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Other	Os08g0151300	LOC_Os08g05520.1				GO:0009740 - gibberellic acid mediated signaling, GO:0030244 - cellulose biosynthetic process, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009834 - secondary cell wall biogenesis, GO:0005634 - nucleus	TO:0000166 - gibberellic acid sensitivity, TO:0000085 - leaf rolling, TO:0000200 - brittle culm	
15020	_	OsBLH6	_	BEL1-like homeodomain gene 6, bell-like homeodomain-containing transcription factor 6			3		 Other	Os03g0165300	LOC_Os03g06930.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
15022	NAC82	OsSWN6, ONAC082, ONAC82	NAC DOMAIN-CONTAINING PROTEIN 82	secondary wall NAC transcription factor 6, secondary wall-associated NAC 6, SECONDARY WALL NAC DOMAIN PROTEIN 6, NAC domain-containing protein 082, NAC domain-containing protein 82	NAC DOMAIN-CONTAINING PROTEIN 82		4	JN634075. LOC_Os04g45340.	 Other	Os04g0536500	LOC_Os04g45340.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15023	NAC90	OsSWN7, ONAC090, ONAC90	NAC DOMAIN-CONTAINING PROTEIN 90	secondary wall NAC transcription factor 7, secondary wall-associated NAC 7, SECONDARY WALL NAC DOMAIN PROTEIN 7, NAC domain-containing protein 090, NAC domain-containing protein 90	NAC DOMAIN-CONTAINING PROTEIN 90		6	JN634076. LOC_Os06g01480.	 Other	Os06g0104200	LOC_Os06g01480.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15024	_	OsMYB46	_	MYB transcription factor 46			12	JN634084.	 Other	Os12g0515300	LOC_Os12g33070.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
15025	RPA2C	RPA2c, OsRPA2c	REPLICATION PROTEIN A 2C	Replication Protein A2c	REPLICATION PROTEIN A 2C	rpa2c	6	Q5Z8L1.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os06g0693300	LOC_Os06g47830.1				GO:0005634 - nucleus, GO:0006260 - DNA replication, GO:0006281 - DNA repair, GO:0003677 - DNA binding, GO:0006310 - DNA recombination		
15026	RPA1C	RPA1c, OsRPA1c	REPLICATION PROTEIN A 1C	Replication Protein A1c	REPLICATION PROTEIN A 1C		5	Q65XV7.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0111000	LOC_Os05g02040.1				GO:0006310 - DNA recombination, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006260 - DNA replication, GO:0006281 - DNA repair, GO:0008270 - zinc ion binding		
15027	SIK2	OsSIK2, YK14	STRESS INDUCED PROTEIN KINASE 2			sik2	7	AF230505.	 Tolerance and resistance - Stress tolerance	Os07g0186200	LOC_Os07g08860.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen		
15028	_	OsFBK12, OsFbox130, Os_F0642	_	F-Box Protein 12, F-box protein 130, F-box protein containing kelch motif 12			3	LOC_Os03g07530. OsFBK12 in Chen et al. 2013. Os_F0642 in Hua et al. 2011.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Character as QTL - Germination	Os03g0171600	LOC_Os03g07530.3, LOC_Os03g07530.2, LOC_Os03g07530.1					TO:0000249 - leaf senescence, TO:0002661 - seed maturation, TO:0000476 - growth hormone content, TO:0000590 - grain weight, TO:0000391 - seed size, TO:0002759 - grain number	
15029	_	OSK1, SKP1, OsSKP1	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN, Oryza sativa SKP1-like gene 1, rice SKP1-like Protein1			11	LOC_Os11g26910. the functional equivalent of ASK1 in Arabidopsis. a component of the SCF E3 ubiquitin ligase complex.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0456300	LOC_Os11g26910.1				GO:0019005 - SCF ubiquitin ligase complex, GO:0000706 - meiotic DNA double-strand break processing, GO:0009615 - response to virus, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000148 - viral disease resistance	
15030	_	OsPOP5, POP5	_	Prolyl Oligopeptidase 5, PROLYL OLIGOPEPTIDASE 5			2	LOC_Os02g18850. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0290600 	LOC_Os02g18850.1				GO:0016020 - membrane, GO:0006508 - proteolysis, GO:0008236 - serine-type peptidase activity		
15031	_	OsERdj3A, TMS1	_	ER-resident J-protein 3A, THERMOSENSITIVE MALE STERILE 1			3	a co-chaperone component of the HSP70 system. LOC_Os03g18200.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os03g0293000	LOC_Os03g18200.2, LOC_Os03g18200.1				GO:0042735 - protein body, GO:0000326 - protein storage vacuole, GO:0034976 - response to endoplasmic reticulum stress, GO:0005773 - vacuole, GO:0002235 - detection of unfolded protein, GO:0009856 - pollination, GO:0009860 - pollen tube growth, GO:0005783 - endoplasmic reticulum		
15032	DIRS1		GYPSY TYPE RETROTRANSPOSON DIRS1	Gypsy /DIRS1 transposon			8		 Other						GO:0032196 - transposition		
15033	OXO1	OsOxO1, OsGLP3-3, GLP3-3	OXALATE OXIDASE 1	oxalate oxidase 1, german-like protein 3-3	OXALATE OXIDASE 1		3	Q851J8.	 Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0693700	LOC_Os03g48750.1				GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0009856 - pollination, GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease	PO:0009049 - inflorescence , PO:0007016 - whole plant flowering stage , PO:0001170 - seed development stage 
15034	OXO3	OsOxO3, OsGLP3-5, GLP3-5	OXALATE OXIDASE 3	oxalate oxidase 3, german-like protein 3-5	OXALATE OXIDASE 3		3	Q851K0.	 Tolerance and resistance - Stress tolerance	Os03g0693900	LOC_Os03g48770.1				GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast		PO:0009005 - root , PO:0009010 - seed 
15035	OXO4	OsOxO4, OsGLP3-6, GLP3-6	OXALATE OXIDASE 4	oxalate oxidase 4, german-like protein 3-6	OXALATE OXIDASE 4		3	Q851K1. KJ781300.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0694000	LOC_Os03g48780.1				GO:0030912 - response to deep water, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0046688 - response to copper ion, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000286 - submergence sensitivity, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000255 - sheath blight disease resistance	PO:0009006 - shoot system , PO:0009005 - root , PO:0007073 - 2 formation of axillary shoot stage , PO:0007014 - booting stage , PO:0025034 - leaf , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
15036	_	OsARAF1	_	Arabinofuranosidase 1			7		 Biochemical character	Os07g0686900	LOC_Os07g48750.1						
15037	_	OsARAF3	_	Arabinofuranosidase 3			11	Alpha-L-arabinofuranosidase C-terminus family protein. LOC_Os11g03730. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0131900	LOC_Os11g03730.3, LOC_Os11g03730.2, LOC_Os11g03730.1				GO:0046373 - L-arabinose metabolic process, GO:0050832 - defense response to fungus, GO:0046556 - alpha-N-arabinofuranosidase activity	TO:0000074 - blast disease	
15038	_	OsARAF2	_	Arabinofuranosidase 2					 Biochemical character								
15039	_	OsARAF4	_	Arabinofuranosidase 4					 Biochemical character								
15040	_	OsARAF5	_	Arabinofuranosidase 5					 Biochemical character								
15041	_	OsBURP01, OsBURP1	_	BURP domain-containing protein 1			5	Q6I5B3.		Os05g0215000	LOC_Os05g12400.1						
15042	_	OsBURP02, OsBURP2	_	BURP domain-containing protein 2			5	Q6I5W0.	 Tolerance and resistance - Stress tolerance	Os05g0217800	LOC_Os05g12640.6, LOC_Os05g12640.4, LOC_Os05g12640.3, LOC_Os05g12640.2, LOC_Os05g12640.1						
15043	_	OsBURP04, OsBURP4	_	BURP domain-containing protein 4			2	Q0E1Z0.	 Tolerance and resistance - Stress tolerance	Os02g0288600	LOC_Os02g18690.1						
15044	_	OsBURP05, OsBURP5	_	BURP domain-containing protein 5			4	Q0JEP3.	 Tolerance and resistance - Stress tolerance	Os04g0225700	LOC_Os04g14990.1						
15045	_	OsBURP06, OsBURP6	_	BURP domain-containing protein 6			5	Q6I5B2.	 Tolerance and resistance - Stress tolerance	Os05g0215066	LOC_Os05g12410.1						
15046	_	OsBURP07, OsBURP7	_	BURP domain-containing protein 7			5	Q60E34.	 Tolerance and resistance - Stress tolerance	Os05g0217700	LOC_Os05g12630.2, LOC_Os05g12630.1						
15047	_	OsBURP08, OsBURP8	_	BURP domain-containing protein 8			5	Q75G46.	 Tolerance and resistance - Stress tolerance	Os05g0221900	LOC_Os05g13490.1						
15048	_	OsBURP09, OsBURP9	_	BURP domain-containing protein 9			6	Q67VD7.	 Tolerance and resistance - Stress tolerance	Os06g0240050	LOC_Os06g13240.1						
15049	_	OsBURP10	_	BURP domain-containing protein 10			6	Q5VN46.	 Tolerance and resistance - Stress tolerance	Os06g0281800	LOC_Os06g17000.1						
15050	_	OsBURP11	_	BURP domain-containing protein 11			6	Q5Z5C9.	 Tolerance and resistance - Stress tolerance	Os06g0302000	LOC_Os06g19800.1						
15051	_	OsBURP12	_	BURP domain-containing protein 12			8	Q6ZA27.	 Tolerance and resistance - Stress tolerance	Os08g0380100	LOC_Os08g29200.1						
15052	_	OsBURP14	_	BURP domain-containing protein 14			9	Q6K2M1.	 Tolerance and resistance - Stress tolerance	Os09g0329000	LOC_Os09g16010.1						
15053	_	OsBURP17	_	BURP domain-containing protein 17			11	B9G9L9.	 Tolerance and resistance - Stress tolerance	Os11g0170900	LOC_Os11g06980.2, LOC_Os11g06980.1						
15055	_	OsHRZ1, HRZ1	_	Haemerythrin motif-containing Really Interesting New Gene (RING)-and Zinc-finger protein 1, Haemerythrin motif-containing RING- and Zinc-finger protein 1		hrz1-1	1	OsHRZ1 negatively regulates responses to Fe deficiency. a RING ubiquitin ligase. a close homolog of Arabidopsis BTS. an Arabidopsis thaliana BRUTUS (BTS) ortholog. putative iron-sensing factor. putative Fe and oxygen/redox state sensor. iron-binding ubiquitin ligase.  GO:1901967: negative regulation of cellular response to iron ion starvation. GO:1990641: response to iron ion starvation. TO:0020089: iron content trait. TO:0006049: iron concentration. TO:0020090: zinc content trait. TO:0006053: zinc concentration.	 Tolerance and resistance - Stress tolerance	Os01g0689451	LOC_Os01g49470.2, LOC_Os01g49470.1				GO:0008270 - zinc ion binding, GO:0005506 - iron ion binding, GO:0010106 - cellular response to iron ion starvation, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000224 - iron sensitivity	
15056	_	OsHORZ1	_	Haemerythrin motif-containing protein without RING- and Zn-finger 1		horz1-1	1			Os01g0861700	LOC_Os01g64250.1						
15057	CYP93G2	CYP93G2, OsF2H	P-450 93G2	Cytochrome P450 93G2, flavanone 2-hydroxylase	CYTOCHROME P450 93G2		6		 Biochemical character	Os06g0102100	LOC_Os06g01250.1				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity		
15059	CYP72A1	CYP72A1	P-450 72A1	Cytochrome P450 72A1	CYTOCHROME P450 72A1		3	LOC_Os03g25500.	 Biochemical character	Os03g0371300/Os03g0371350					GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
15060	_	OsMaT-3	_	malonyltransferase 3			2	LOC_Os02g28340. metabolite: Tricin O-malonylhexoside.	 Biochemical character	Os02g0485000	LOC_Os02g28340.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
15061	_	OsMaT-2	_	malonyltransferase 2, flavonol 3-O-glucoside malonyltransferase			2	LOC_Os02g28170. metabolite: Tricin O-malonylhexoside.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0483500	LOC_Os02g28170.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009408 - response to heat	TO:0000432 - temperature response trait	
15062	_	OsMaT-1	_	malonyltransferase 1			2		 Biochemical character	Os02g0484200	LOC_Os02g28220.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
15063	CYP27	OsCYP-27	CYCLOPHILIN 27	cyclophilin 27	CYCLOPHILIN 27		10	OsCYP-27 in Trivedi et al. 2013. LOC_Os10g15370.	 Biochemical character		LOC_Os10g15370						
15064	CYP20	OsCYP-20	CYCLOPHILIN 20	cyclophilin 20	CYCLOPHILIN 20		8	OsCYP-20 in Trivedi et al. 2013. LOC_Os08g05050.	 Biochemical character		LOC_Os08g05050						
15065	CYP7	OsCYP-7	CYCLOPHILIN 7	cyclophilin 7	CYCLOPHILIN 7		2	OsCYP-7 in Trivedi et al. 2013. Sm gene, Sm family protein in Chen and Cao 2014.	 Biochemical character	Os02g0510100	LOC_Os02g30624.2, LOC_Os02g30624.1						
15067	_	OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA	_	adaptor protein NINJA 1, adaptor protein NINJA 2, NOVEL INTERACTOR OF JAZ 1, NOVEL INTERACTOR OF JAZ 2			5	Q6AT41. GO:1900056: negative regulation of leaf senescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os05g0558800	LOC_Os05g48500.1, LOC_Os05g48500.2, LOC_Os05g48500.3				GO:0009607 - response to biotic stimulus, GO:0009628 - response to abiotic stimulus, GO:0010150 - leaf senescence, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
15068	_	OsSkp15	_	Oryza sativa Skp1 homolog 15				a component of the SCF complex. a rice ortholog of Arabidopsis Skp1 (ASK1). GID2 interacted with OsSkp15.									
15069	TIFY11E	OsJAZ 13, OsJAZ13, JAZ13, OsTIFY11e	TIFY GENE 11E	Jasmonate ZIM-domain protein 13	TIFY DOMAIN PROTEIN 11E		10	OsJAZ 13 in Yamada et al. 2012, Kashihara et al. 2019. Q7XEZ6. GO:1903507: negative regulation of nucleic acid-templates transcription. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0391400	LOC_Os10g25230.1				GO:0009753 - response to jasmonic acid stimulus, GO:0003714 - transcription corepressor activity, GO:0031347 - regulation of defense response, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009611 - response to wounding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000172 - jasmonic acid sensitivity	
15070	TIFY11F	OsJAZ 14, OsJAZ14, OsTIFY11f	TIFY GENE 11F	Jasmonate ZIM-domain protein 14	TIFY DOMAIN PROTEIN 11F		10	OsJAZ 14 in Yamada et al. 2012. LOC_Os10g25250.	 Tolerance and resistance - Stress tolerance	Os10g0391801/Os10g0392101							
15071	TIFY11G	OsJAZ 15, OsJAZ15, OsTIFY11g	TIFY GENE 11G	Jasmonate ZIM-domain protein 15	TIFY DOMAIN PROTEIN 11G		3	OsJAZ 15 in Yamada et al. 2012. 	 Tolerance and resistance - Stress tolerance	Os03g0396500	LOC_Os03g27900.1						
15072	TIFY5	OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188	TIFY GENE 5	Jasmonate ZIM-domain protein 2	TIFY DOMAIN PROTEIN 5		7	Q69NY7. OsJAZ2 in Yamada et al. 2012. a mature anther-preferentially expressed gene. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0153000	LOC_Os07g05830.1				GO:0005634 - nucleus, GO:0009611 - response to wounding, GO:0031347 - regulation of defense response		PO:0009066 - anther 
15075	_	OsSkp1	_	Oryza sativa Skp1 homolog 1													
15076	_	OsSkp2	_	Oryza sativa Skp1 homolog 2				GID2 interacted with OsSkp2									
15077	_	OsSkp3	_	Oryza sativa Skp1 homolog 3													
15078	_	OsSkp4	_	Oryza sativa Skp1 homolog 4													
15079	_	OsSkp5	_	Oryza sativa Skp1 homolog 5				GID2 did not interact with OsSkp5 in a yeast two-hybrid assay.									
15080	_	OsSkp6	_	Oryza sativa Skp1 homolog 6													
15081	_	OsSkp7	_	Oryza sativa Skp1 homolog 7													
15082	_	OsSkp8	_	Oryza sativa Skp1 homolog 8													
15083	_	OsSkp9	_	Oryza sativa Skp1 homolog 9													
15084	_	OsSkp10	_	Oryza sativa Skp1 homolog 10													
15085	_	OsSkp11	_	Oryza sativa Skp1 homolog 11													
15086	_	OsSkp12	_	Oryza sativa Skp1 homolog 12													
15087	_	OsSkp13	_	Oryza sativa Skp1 homolog 13													
15088	_	OsSkp14	_	Oryza sativa Skp1 homolog 14													
15089	_	OsSAP	_	senescence-associated-protein				AB734097.	 Tolerance and resistance - Stress tolerance								
15090	STN8	OsSTN8	STATE TRANSITION 8	STN8 kinase	STATE TRANSITION 8	osstn8, stn8	5	LOC_Os05g40180.	 Tolerance and resistance - Stress tolerance	Os05g0480000	LOC_Os05g40180.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0009507 - chloroplast, GO:0009579 - thylakoid, GO:0042549 - photosystem II stabilization, GO:0009644 - response to high light intensity	TO:0000075 - light sensitivity	
15091	STN7	OsSTN7	STATE TRANSITION 7	STN7 kinase	STATE TRANSITION 7	stn7	5	LOC_Os05g47560. targeted by osa-miR444 (Qin et al. 2017).	 Tolerance and resistance - Stress tolerance	Os05g0549100	LOC_Os05g47560.1				GO:0005524 - ATP binding, GO:0009507 - chloroplast, GO:0009643 - photosynthetic acclimation, GO:0042548 - regulation of photosynthesis, light reaction, GO:0042651 - thylakoid membrane, GO:0007623 - circadian rhythm, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity	TO:0000075 - light sensitivity	
15092	_	p-SINE1-r1, p-SINE1-r1*	_	transposon p-SINE1-r1				D10677 (Oryza glaberrima).	 Other						GO:0032196 - transposition		
15093	_	p-SINE1-r2	_	transposon p-SINE1-r2					 Other						GO:0032196 - transposition		
15094	_	p-SINE1-r3	_	transposon p-SINE1-r3				D10672.	 Other						GO:0032196 - transposition		
15095	_	p-SINE1-r4	_	transposon p-SINE1-r4				D10673. D14534 (O. longistaminata), D14535 (O. rufipogon).	 Other						GO:0032196 - transposition		
15096	_	p-SINE1-r5	_	transposon p-SINE1-r5				D10674.	 Other						GO:0032196 - transposition		
15097	_	p-SINE1-r6	_	transposon p-SINE1-r6				D10675.	 Other						GO:0032196 - transposition		
15098	_	p-SINE1-r7	_	transposon p-SINE1-r7				D10676.	 Other						GO:0032196 - transposition		
15099	_	p-SINE1-r21	_	transposon p-SINE1-r21, retroposon p-SINE1-r21				D85045.	 Other						GO:0032196 - transposition		
15100	_	p-SINE1-r22	_	transposon p-SINE1-r22, retroposon p-SINE1-r22				D85046.	 Other						GO:0032196 - transposition		
15101	_	p-SINE1-r23	_	transposon p-SINE1-r23, retroposon p-SINE1-r23				D85047.	 Other						GO:0032196 - transposition		
15102	_	p-SINE1-r24	_	transposon p-SINE1-r24, retroposon p-SINE1-r24				D85048.	 Other						GO:0032196 - transposition		
15103	_	p-SINE1-r25	_	transposon p-SINE1-r25, retroposon p-SINE1-r25				D85049.	 Other						GO:0032196 - transposition		
15104	_	p-SINE1-r26	_	transposon p-SINE1-r26, retroposon p-SINE1-r26				D85050.	 Other						GO:0032196 - transposition		
15105	_	p-SINE1-r27	_	transposon p-SINE1-r27, retroposon p-SINE1-r27				D85051.	 Other						GO:0032196 - transposition		
15106	_	p-SINE1-r28	_	transposon p-SINE1-r28, retroposon p-SINE1-r28				D85052.	 Other						GO:0032196 - transposition		
15107	_	p-SINE1-r29	_	transposon p-SINE1-r29, retroposon p-SINE1-r29				D85053.	 Other						GO:0032196 - transposition		
15108	_	p-SINE1-r30	_	transposon p-SINE1-r30, retroposon p-SINE1-r30				D85054.	 Other						GO:0032196 - transposition		
15109	_	p-SINE1-r31	_	transposon p-SINE1-r31, retroposon p-SINE1-r31				D85055.	 Other						GO:0032196 - transposition		
15110	_	p-SINE1-r32	_	transposon p-SINE1-r32, retroposon p-SINE1-r32				D85056.	 Other						GO:0032196 - transposition		
15111	_	p-SINE1-r33	_	transposon p-SINE1-r33, retroposon p-SINE1-r33				D85057.	 Other						GO:0032196 - transposition		
15112	_	p-SINE1-r34	_	transposon p-SINE1-r34, retroposon p-SINE1-r34				D85058.	 Other						GO:0032196 - transposition		
15113	_	p-SINE1-r35	_	transposon p-SINE1-r35, retroposon p-SINE1-r35				D85059.	 Other						GO:0032196 - transposition		
15114	_	p-SINE1-r36	_	transposon p-SINE1-r36, retroposon p-SINE1-r36				D85060.	 Other						GO:0032196 - transposition		
15115	_	p-SINE1-r38	_	transposon p-SINE1-r38, retroposon p-SINE1-r38				D85068.	 Other						GO:0032196 - transposition		
15116	_	p-SINE1-r100	_	transposon p-SINE1-r100, retroposon p-SINE1-r100				D85061.	 Other						GO:0032196 - transposition		
15117	_	p-SINE1-r101	_	transposon p-SINE1-r101, retroposon p-SINE1-r101				D85062.	 Other						GO:0032196 - transposition		
15118	_	p-SINE1-r102	_	transposon p-SINE1-r102, retroposon p-SINE1-r102				D85063.	 Other						GO:0032196 - transposition		
15119	_	p-SINE1-r103	_	transposon p-SINE1-r103, retroposon p-SINE1-r103				D85064.	 Other						GO:0032196 - transposition		
15120	_	p-SINE1-r104	_	transposon p-SINE1-r104, retroposon p-SINE1-r104				D85065.	 Other						GO:0032196 - transposition		
15121	_	p-SINE1-r105	_	transposon p-SINE1-r105, retroposon p-SINE1-r105				D85066.	 Other						GO:0032196 - transposition		
15122	_	p-SINE1-r106	_	transposon p-SINE1-r106, retroposon p-SINE1-r106				D85067.	 Other						GO:0032196 - transposition		
15123	_	p-SINE1-r107	_	transposon p-SINE1-r107, retroposon p-SINE1-r107					 Other						GO:0032196 - transposition		
15124	_	p-SINE1-r108	_	transposon p-SINE1-r108, retroposon p-SINE1-r108					 Other						GO:0032196 - transposition		
15125	_	p-SINE1-r109	_	transposon p-SINE1-r109, retroposon p-SINE1-r109					 Other						GO:0032196 - transposition		
15126	_	p-SINE1-r111	_	transposon p-SINE1-r111, retroposon p-SINE1-r111					 Other						GO:0032196 - transposition		
15127	_	p-SINE1-r112	_	transposon p-SINE1-r112, retroposon p-SINE1-r112					 Other						GO:0032196 - transposition		
15128	_	OsSPL, OsSPL1	_	Sphingosine-1-phosphate lyase, sphingosine-1-phosphate lyase 1			1	AY972084. Q52RG7. LOC_Os01g01080.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0100900	LOC_Os01g01080.3, LOC_Os01g01080.2, LOC_Os01g01080.1				GO:0050832 - defense response to fungus, GO:0008117 - sphinganine-1-phosphate aldolase activity, GO:0016021 - integral to membrane, GO:0016831 - carboxy-lyase activity, GO:0019752 - carboxylic acid metabolic process, GO:0080129 - proteasome core complex assembly, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0051788 - response to misfolded protein, GO:0030149 - sphingolipid catabolic process, GO:0009407 - toxin catabolic process, GO:0009751 - response to salicylic acid stimulus, GO:0005789 - endoplasmic reticulum membrane, GO:0006665 - sphingolipid metabolic process, GO:0006915 - apoptosis, GO:0006635 - fatty acid beta-oxidation, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0030170 - pyridoxal phosphate binding	TO:0000401 - plant growth hormone sensitivity, TO:0000074 - blast disease	
15129	_	Os6PGDH1, Os6PGDH	_	6-phosphogluconate dehydrogenase 1, cytosolic 6PGDH			6	AF486280. Q9LI00.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0111500	LOC_Os06g02144.2, LOC_Os06g02144.1				GO:0009414 - response to water deprivation, GO:0019521 - D-gluconate metabolic process, GO:0009409 - response to cold, GO:0006098 - pentose-phosphate shunt, GO:0050661 - NADP or NADPH binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity	TO:0006001 - salt tolerance	
15130	_	Os6PGDH2	_	6-phosphogluconate dehydrogenase 2, plastidic 6PGDH			11	AY278362. Q2R480. D15195.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0484500	LOC_Os11g29400.1				GO:0009651 - response to salt stress, GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0050661 - NADP or NADPH binding, GO:0019521 - D-gluconate metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0006098 - pentose-phosphate shunt		
15131	_	SRZ1	_	stress repressive zinc finger protein 1			2	AY219846. LOC_Os02g10920. APC regulator. APC regulatory subunit.	 Tolerance and resistance - Stress tolerance	Os02g0203700 	LOC_Os02g10920.6, LOC_Os02g10920.5, LOC_Os02g10920.4, LOC_Os02g10920.3, LOC_Os02g10920.2, LOC_Os02g10920.1				GO:0008270 - zinc ion binding		
15132	_	SRZ3	_	stress repressive zinc finger protein 3			1			Os01g0555100	LOC_Os01g37460.1				GO:0008270 - zinc ion binding		
15133	_	SRZ4	_	stress repressive zinc finger protein 4			4			Os04g0110600	LOC_Os04g02000.2, LOC_Os04g02000.1				GO:0008270 - zinc ion binding		
15136	_	OsPRA1	_	Prenylated rab acceptor			5	AY789531. a rice homolog of PRA1. a G-proteinsignaling component.	 Tolerance and resistance - Stress tolerance	Os05g0474400	LOC_Os05g39670.1				GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
15137	_	Prol-02, pro10.3	_				3	10 kDa prolamin. AK242216, Os03g0776250, LOC_Os03g55740 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os03g0766350 	LOC_Os03g55740.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15138	_	Prol-03, pro13b.5	_				5	13 kDa prolamin. Os05g0328333, LOC_Os05g26240 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0328333 	LOC_Os05g26240.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15139	_	Prol-04, pro13b.8, PROLM4	_	Prolamin 4			5	13 kDa prolamin. EF122439. LOC_Os05g26350. PROLM4 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os05g0328800 	LOC_Os05g26350.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15140	_	Prol-05, pro13b.9	_				5	13 kDa prolamin.	 Seed - Physiological traits - Storage substances	Os05g0328901 	LOC_Os05g26368.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15141	_	Prol-07	_				5	prolamin. Q0DJ45. EF122440, Os05g0329100, LOC_Os05g26400 (Yoon et al. 2012). 	 Seed - Physiological traits - Storage substances	Os05g0328466/Os05g0328632/Os05g0329350					GO:0005773 - vacuole, GO:0033095 - aleurone grain, GO:0045735 - nutrient reservoir activity		
15142	_	Prol-09, Prol-27	_				5	prolamin. EF122441, EF122442. 	 Seed - Physiological traits - Storage substances	Os05g0329400	LOC_Os05g26440.1						
15143	_	Prol-10, pro13b.16, PROLM12	_	Prolamin 12			5	13 kDa prolamin. Os05g0329200, LOC_Os05g26480 (Yoon et al. 2012). PROLM12 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os05g0329200 	LOC_Os05g26480.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15144	_	Prol-11, pro13b.17, PROLM13	_	Prolamin 13			5	13 kDa prolamin. LOC_Os05g26490.	 Seed - Physiological traits - Storage substances	Os05g0330150 	LOC_Os05g26490.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15145	_	Prol-12, pro13b.18	_				5	13 kDa prolamin. FJ940201, Os05g0330600, LOC_Os05g26620 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0330600  	LOC_Os05g26620.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15147	_	Prol-13	_				5	prolamin. EF122443, Os05g0331550, LOC_Os05g26720(=Os05g0331532) (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0331550							
15148	_	Prol-14, pro13b.21, PROLM17	_				5	13 kDa prolamin. AK242595, Os05g0331800, LOC_Os05g26750 (Yoon et al. 2012). PROLM17 in Huang et al. 2016.	 Seed - Physiological traits - Storage substances	Os05g0331800 	LOC_Os05g26750.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15149	_	Prol-15, pro13b.22	_				5	13 kDa prolamin. EF122444, Os05g0332000, LOC_Os05g26770 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0332000 	LOC_Os05g26770.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15150	_	Prol-16, OsEnS-87, EnS-87, pro16.1	_	endosperm-specific gene 87			6	16 kDa prolamin. LOC_Os06g31060.	 Seed - Physiological traits - Storage substances	Os06g0507100	LOC_Os06g31060.2, LOC_Os06g31060.1				GO:0042735 - protein body, GO:0045735 - nutrient reservoir activity, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15151	_	Prol-17, OsEnS-88, pro16.2, PROLM24	_	16 kDa prolamin, cystein-rich 16.6-kDa prolamin, endosperm-specific gene 88			6	EF122449. FJ940202. LOC_Os06g31070. AY427574 (promoter). PROLM24 in Huang et al. 2016.	 Seed - Physiological traits - Storage substances	Os06g0507200 	LOC_Os06g31070.1				GO:0042735 - protein body, GO:0045735 - nutrient reservoir activity, GO:0005783 - endoplasmic reticulum	TO:0002661 - seed maturation	PO:0009089 - endosperm 
15152	_	Prol-20, pro13b.1, PROLM19	_	Prolamin 19			7	13 kDa prolamin. LOC_Os07g11900. PROLM19 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0219250 	LOC_Os07g11900.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15153	_	Prol-23, pro10.4, SSA5	_	2S albumin seed storage family protein			11	10 kDa prolamin. EF122448, LOC_Os11g33000 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os11g0535525 	LOC_Os11g33000.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15154	_	Prol-24, pro13a.3	_				12	13 kDa prolamin. AK242177, Os12g0269101, LOC_Os12g16880 (Yoon et al. 2012). a seed storage protein.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os12g0269100 	LOC_Os12g16880.1				GO:0008233 - peptidase activity, GO:0006508 - proteolysis, GO:0045735 - nutrient reservoir activity, GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15155	_	Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, PROLM28	_	Prolamin 28			12	13 kDa prolamin. EF122451, EF122452, EF122453, FJ940200, Os12g0269200, LOC_Os12g16890 (Yoon et al. 2012). PROLM28 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os12g0269200 	LOC_Os12g16890.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body, GO:0045735 - nutrient reservoir activity		PO:0009089 - endosperm 
15156	_	Prol-26, pro13a.6	_				12	13 kDa prolamin. EF122454, Os12g0269600, LOC_Os12g17030 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os12g0269700	LOC_Os12g17030.1				GO:0042735 - protein body, GO:0045735 - nutrient reservoir activity, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15158	_	OS-DFR3	_	dihydroflavonol 4-reductase 3				NM_188999 (Obsolete).	 Biochemical character						GO:0003824 - catalytic activity, GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding		
15159	_	OS-CAD	_	cinnamoyl alcohol dehydrogenase			3	NM_193168 (obsolete).	 Biochemical character	Os03g0581100	LOC_Os03g38440.1						
15160	CCR20	OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14	CINNAMOYL-COA REDUCTASE 20	cinnamoyl-CoA reductase, cinnamoyl CoA reductase 20	CINNAMOYL-COA REDUCTASE 20		8	LOC_Os08g34280. AP004703. CCR20 in Koshiba et al. 2013, Park et al. 2017. OsCCR14 in Borah & Khurana 2018. GO:1901698: response to nitrogen compound. Orthologous to Arabidopsis CCR1 (AtCCR1/IRX4). 	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0441500 	LOC_Os08g34280.1				GO:0009834 - secondary cell wall biogenesis, GO:0042742 - defense response to bacterium, GO:0009411 - response to UV, GO:0009807 - lignan biosynthetic process, GO:0009809 - lignin biosynthetic process, GO:0050662 - coenzyme binding, GO:0050832 - defense response to fungus, GO:0044237 - cellular metabolic process, GO:0003824 - catalytic activity	TO:0000733 - lignin biosynthesis trait, TO:0000051 - stem strength, TO:0000175 - bacterial blight disease resistance, TO:0000731 - lignin content, TO:0000160 - UV light sensitivity, TO:0000074 - blast disease, TO:0000011 - nitrogen sensitivity	
15162	GW5	qSW5/GW5, GSE5	GRAIN WIDTH 5	GRAIN SIZE ON CHROMOSOME 5		gse5-cr	5	LOC_Os05g09520. a Plasma Membrane-Associated Protein with IQ Domains.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os05g0187500	LOC_Os05g09520.1				GO:0005886 - plasma membrane, GO:0019722 - calcium-mediated signaling, GO:0010229 - inflorescence development, GO:0042127 - regulation of cell proliferation, GO:0048316 - seed development	TO:0000402 - grain width, TO:0000590 - grain weight, TO:0000621 - inflorescence development trait, TO:0000397 - grain size, TO:0000653 - seed development trait	PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
15163	HGW	HGW	HEADING AND GRAIN WEIGHT	heading and grain weight	UBA DOMAIN PROTEIN	hgw	6	Ubiquitin-associated (UBA) domain protein	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os06g0160400	LOC_Os06g06530.1					TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000137 - days to heading	
15164	SRS3	OsSRS3, SAR1, OsSAR1	SMALL AND ROUND SEED 3	small and round seed 3, small and round grains 1, SRS3/OsKINESIN-13A, OsKinesin-13A, OsKinesin13A, Kinesin13A, Kinesin 13A	KINESIN	srs3, sar1	5	LOC_Os05g06280. AB531488. B9FMJ3. kinesin 13 protein. 	 Character as QTL - Yield and productivity	Os05g0154700	LOC_Os05g06280.3, LOC_Os05g06280.2, LOC_Os05g06280.1				GO:0007018 - microtubule-based movement, GO:0005886 - plasma membrane, GO:0008152 - metabolic process, GO:0009826 - unidimensional cell growth, GO:0010090 - trichome morphogenesis, GO:0010215 - cellulose microfibril organization, GO:0016192 - vesicle-mediated transport, GO:0031982 - vesicle, GO:0043622 - cortical microtubule organization, GO:0003777 - microtubule motor activity, GO:0005524 - ATP binding, GO:0005795 - Golgi stack, GO:0005871 - kinesin complex, GO:0005874 - microtubule	TO:0000207 - plant height, TO:0000734 - grain length, TO:0020033 - glume length, TO:0000397 - grain size, TO:0000145 - internode length	
15165	_	OS-PYDK, Ospdhk, PDHK, Ospdhk2, pdhk2 OsHRK1, HRK1	_	pyruvate dehydrogenase kinase, pyruvate dehydrogenase kinase 2, OsHIRP1-regluated Kinase1			7	AY026039. AY785812, AY785813 (indica). BF889446. Ospdhk2 in japonica and Ospdhk in indica (Mukherjee et al. 2012).	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0637300	LOC_Os07g44330.3, LOC_Os07g44330.2, LOC_Os07g44330.1				GO:0009408 - response to heat, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0009927 - histidine phosphotransfer kinase activity, GO:0046777 - protein amino acid autophosphorylation, GO:0050832 - defense response to fungus	TO:0000723 - microsporocyte development trait, TO:0002616 - flowering time, TO:0002759 - grain number, TO:0000074 - blast disease, TO:0000259 - heat tolerance	
15166	NP1 	OS-ACE, OsNP1	NO POLLEN 1 	No Pollen 1		osnp1, osnp1-1, osnp1-2, osnp1-3, np1-4	10	LOC_Os10g38050. AF251031. glucose-methanol-choline oxidoreductase. an HTH1-related protein. TO:1000022: anther morphology trait.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os10g0524500	LOC_Os10g38050.1				GO:0080110 - sporopollenin biosynthetic process, GO:0006066 - alcohol metabolic process, GO:0008812 - choline dehydrogenase activity, GO:0016829 - lyase activity, GO:0050660 - FAD binding, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0010584 - pollen exine formation, GO:0048653 - anther development, GO:0009556 - microsporogenesis	TO:0000723 - microsporocyte development trait, TO:0000437 - male sterility, TO:0000421 - pollen fertility, TO:0000187 - anther color, TO:0000215 - stamen anatomy and morphology trait, TO:0000245 - pollen free	PO:0001004 - anther development stage , PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0009066 - anther , PO:0025543 - tapetum cell , PO:0009071 - anther wall tapetum 
15167	_	OS-RNAH, OsRH29	_	RNA helicase, RNA helicase 29			8	AY644647. A2YV85, A3BT52. DEAD-box RNA helicase protein. LOC_Os08g32090.	 Biochemical character	Os08g0416100	LOC_Os08g32090.1				GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006200 - ATP catabolic process, GO:0008026 - ATP-dependent helicase activity	TO:0000723 - microsporocyte development trait	
15168	_	OS-QR	_	quinone reductase			3	AY644646.	 Biochemical character	Os03g0748500	LOC_Os03g53730.1				GO:0016491 - oxidoreductase activity, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0055114 - oxidation reduction, GO:0010181 - FMN binding	TO:0000723 - microsporocyte development trait	
15169	_	OS-NUC	_	RNA-binding nucleolin			8	AY644645. Q6Z1C0.		Os08g0192900	LOC_Os08g09350.1				GO:0006364 - rRNA processing, GO:0005730 - nucleolus, GO:0003723 - RNA binding, GO:0000166 - nucleotide binding	TO:0000723 - microsporocyte development trait	
15170	_	OS-RP2	_				7	AY644643.		Os07g0655800	LOC_Os07g46210.1					TO:0000723 - microsporocyte development trait	
15171	_	OsFAD2, OsFAD2-1	_	fatty acid desaturase 2, microsomal delta-12 fatty acid desaturase, microsomal Delta12-fatty acid desaturase 2-1			2	FJ768953.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0716500 	LOC_Os02g48560.6, LOC_Os02g48560.5, LOC_Os02g48560.4, LOC_Os02g48560.3, LOC_Os02g48560.2, LOC_Os02g48560.1				GO:0006629 - lipid metabolic process, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	TO:0000303 - cold tolerance, TO:0005001 - linoleic acid content, TO:0005002 - oleic acid content	
15172	SPIP	Spip	LTR RETROTRANSPOSON SPIP	non-autonomous LTR retrotransposon Spip, Spip LTR retrotransposon				AY355292.	 Other						GO:0032196 - transposition		
15173	SQUIQ	Squiq	LTR RETROTRANSPOSON SQUIQ	non-autonomous LTR retrotransposon Squiq, Squiq LTR retrotransposon				AY355293.	 Other						GO:0032196 - transposition		
15174	_		_					Lipid-Transfer Protein. AF017358.							GO:0008289 - lipid binding, GO:0006869 - lipid transport		
15175	_	YR1, YR7, YR11, YR20, YR22, YR24	_				5	AF220728, AF220733, AF220736, AF220742, AF220744, AF220746. NBS-LRR-like protein. AF392812, AF392814, AF392817, AF392847, AF392848, AF392849, AF392851, AF392859, AF392860, AF392867.	 Tolerance and resistance - Disease resistance	Os05g0492200	LOC_Os05g41290.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15176	_	YR2, YR6, YR9, YR10, YR21, YR23	_				11	AF220729, AF220732, AF220734, AF220735, AF220743, AF220745. NBS-LRR-like protein. AF392806, AF392818, AF392822, AF392824, AF392825, AF392829, AF392832, AF392835, AF392839, AF392841, AF392846, AF392850, AF392862, AF392863, AF392864, AF392866, AF392868.	 Tolerance and resistance - Disease resistance	Os11g0673600	LOC_Os11g44960.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15177	_	YR5	_				11	AF220731. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance	Os11g0226800	LOC_Os11g11950.1				GO:0043531 - ADP binding		
15178	_	YR14, YR18, YR26	_				8	AF220738, AF220740, AF220747. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance	Os08g0296600	LOC_Os08g19980.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
15179	_	YR16, YR29, rNBS42	_	NBS-LRR protein rNBS42			2	LOC_Os02g02670. AF220739, AF220749. AF516892. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance	Os02g0118900	LOC_Os02g02670.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
15180	_	YR12	_				4	AF220737. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
15181	_	YR19	_				4	AF220741. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
15182	_	YR36	_				8	AF224493. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance	Os08g0296700	LOC_Os08g20000.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15183	_	YR35	_				3	AF227001. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
15184	_	YR48	_				5	AF227003. NBS-LRR-like protein. AF392807, AF392826, AF392827, AF392828, AF392830, AF392843.	 Tolerance and resistance - Disease resistance	Os05g0492600	LOC_Os05g41310.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15185	_	YK12	_				9	AF230500.		Os09g0572550/Os09g0572600 					GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15186	DRUS2	YK1, OsCrRLK1L5	DWARF AND RUNTISH SPIKELET2	Catharanthus roseus receptor-like kinase1-like kinase 5, DWARF AND RUNTISH SPIKELET 2		drus2	1	AF230501. LOC_Os01g56330. rice ortholog of Arabidopsis thaliana FERONIA. TO:0000862: floral organ anatomy and morphology trait.	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0769700	LOC_Os01g56330.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0043610 - regulation of carbohydrate utilization, GO:0048653 - anther development, GO:0019252 - starch biosynthetic process	TO:0000531 - anther length, TO:0000040 - panicle length, TO:0000187 - anther color, TO:0000366 - reproductive growth time, TO:0000180 - spikelet fertility, TO:0000657 - spikelet anatomy and morphology trait, TO:0000564 - spikelet width, TO:0000547 - primary branch number, TO:0000621 - inflorescence development trait, TO:0006036 - stem elongation, TO:0000392 - sterility or fertility trait, TO:0000207 - plant height	PO:0009005 - root , PO:0001004 - anther development stage , PO:0007089 - stem elongation stage , PO:0001083 - inflorescence development stage 
15187	_	YK11, OsCrRLK1L11	_	Catharanthus roseus receptor-like kinase1-like kinase 11			5	AF230503. GO:0090404: pollen tube tip. LOC_Os05g20150.		Os05g0280700	LOC_Os05g20150.1				GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0016324 - apical plasma membrane, GO:0009860 - pollen tube growth, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
15188	_	YK18	_				4	AF230507.		Os04g0419900	LOC_Os04g34270.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen		
15189	_	YK19	_				10	AF230508.		Os10g0375000	LOC_Os10g22890.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
15190	_	YK28	_				4	AF230513.		Os04g0103500	LOC_Os04g01310.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0005524 - ATP binding		
15191	_	YK35	_				7	AF230515. LOC_Os07g03900. Os07g0131100 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os07g03900				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030246 - carbohydrate binding		
15192	_	YK13	_				1	AF230504.							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15193	_	YK15	_				4	AF230506.							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15194	_	YK20	_				1	AF230509.							GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
15195	_	YK25	_				1	AF230511.							GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
15196	_	YK26	_				1	AF230512.							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15197	_	YK30	_				11	AF230514.							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15198	_	D53-like	_				12	LOC_Os12g01360.		Os12g0104300	LOC_Os12g01360.1				GO:0019538 - protein metabolic process		
15199	PI49	Pi49, Pi49(t)	PYRICULARIA ORYZAE RESISTANCE 49				11	The dominant resistance gene, designated Pi49, was mapped on chromosome 11 with genetic distance of 1.01 and 1.89 cM from SSR markers K10 and K134, respectively. Pi49 could be a novel allele of Pik-h.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
15200	_	JMJ705	_	Jumonji 705, Jumonji C Domain Protein JMJ705			1	JmjC domain containing protein,  histone lysine demethylase. H3K27 Demethylase.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0907400	LOC_Os01g67970.1				GO:0048366 - leaf development, GO:0033169 - histone H3-K9 demethylation, GO:0035067 - negative regulation of histone acetylation, GO:0046872 - metal ion binding, GO:0009826 - unidimensional cell growth, GO:0009741 - response to brassinosteroid stimulus, GO:0003676 - nucleic acid binding, GO:0010228 - vegetative to reproductive phase transition	TO:0000175 - bacterial blight disease resistance, TO:0000164 - stress trait, TO:0000172 - jasmonic acid sensitivity	
15201	_	PR10	_	pathogenesis-related gene 10			12	LOC_Os12g36860.	 Tolerance and resistance - Disease resistance	Os12g0555300	LOC_Os12g36860.1				GO:0009607 - response to biotic stimulus, GO:0006952 - defense response	TO:0000179 - biotic stress trait, TO:0000172 - jasmonic acid sensitivity	
15202	_	TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13	_	TERPENE SYNTHASE3, terpene synthase 3, terpene synthase 28			7	LOC_Os07g11790. a JA-induced gene. OsTPS28 in Lee et al. 2014, Ozawa et al. 2017. one of three STPSs (sesquiterpene synthase). OsTPS13 in Kamolsukyunyong et al. 2013.	 Biochemical character	Os07g0218200	LOC_Os07g11790.1				GO:0000287 - magnesium ion binding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010333 - terpene synthase activity	TO:0000172 - jasmonic acid sensitivity	
15203	_	JMJ706, OsJMJ706	_	Jumonji 706		jmj6-1, jmj6-2, jmj706	10	JmjC domain containing protein,  a heterochromatin-enriched protein. a H3K9 demethylase. TO:0000816: inflorescence bract anatomy and morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0577600	LOC_Os10g42690.1				GO:0005634 - nucleus	TO:0000240 - sterile lemma length, TO:0000622 - flower development trait, TO:0006022 - floral organ development trait	
15204	_	JMJ701	_	Jumonji 701			3	JmjC domain containing protein.		Os03g0151300	LOC_Os03g05680.1						
15205	_	JMJ707	_	Jumonji 707			2	JmjC domain containing protein.		Os02g0696700	LOC_Os02g46930.1				GO:0005634 - nucleus		
15206	_	JMJ702	_	Jumonji 702			12	JmjC domain containing protein.		Os12g0279100	LOC_Os12g18150.1				GO:0003676 - nucleic acid binding, GO:0046872 - metal ion binding		
15207	_	JMJ708	_	Jumonji 708			6	JmjC domain containing protein.		Os06g0731500	LOC_Os06g51490.1						
15208	_	JMJ704	_	Jumonji 704			5	JmjC domain containing protein.		Os05g0302300	LOC_Os05g23670.1				GO:0010216 - maintenance of DNA methylation, GO:0009910 - negative regulation of flower development, GO:0048573 - photoperiodism, flowering, GO:0005634 - nucleus, GO:0032453 - histone demethylase activity (H3-K4 specific)		
15209	_	JMJ716	_	Jumonji 716			3	JmjC domain containing protein.		Os03g0346700	LOC_Os03g22540.1						
15210	_	JMJ718	_	Jumonji 718			9	JmjC domain containing protein.		Os09g0393200	LOC_Os09g22540.1				GO:0003677 - DNA binding		
15211	_	JMJ719	_	Jumonji 719			2	JmjC domain containing protein. LOC_Os02g01940.		Os02g0109400/Os02g0109501							
15212	_	JMJ720	_	Jumonji 720			2	JmjC domain containing protein. 		Os02g0828900	LOC_Os02g58210.2, LOC_Os02g58210.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
15213	_	JMJ715	_	Jumonji 715			3	JmjC domain containing protein. LOC_Os03g31594.		Os03g0430100/Os03g0430400					GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
15214	_	JMJ714	_	Jumonji 714			9	JmjC domain containing protein.		Os09g0483600	LOC_Os09g31050.1						
15215	_	JMJ713	_	Jumonji 713			1	JmjC domain containing protein.		Os01g0773200	LOC_Os01g56640.3, LOC_Os01g56640.2, LOC_Os01g56640.1						
15216	_	JMJ712	_	Jumonji 712			9	JmjC domain containing protein.		Os09g0489200	LOC_Os09g31380.1						
15217	_	JMJ717	_	Jumonji 717			8	JmjC domain containing protein.		Os08g0508500	LOC_Os08g39810.1						
15218	_	JMJ710, OsFbox611, Os_F0574	_	Jumonji 710, F-box protein 611			11	LOC_Os11g36450. JmjC domain containing protein. GO:0000987: core promoter proximal region sequence-specific DNA binding. Os_F0574 in Hua et al. 2011.		Os11g0572800	LOC_Os11g36450.1				GO:0005634 - nucleus, GO:0043985 - histone H4-R3 methylation, GO:0010030 - positive regulation of seed germination		
15219	_	JMJ711, OsFbox149, Os_F0347	_	Jumonji 711, F-box protein 149			3	LOC_Os03g27250. JmjC domain containing protein. Os_F0347 in Hua et al. 2011.		Os03g0389900	LOC_Os03g27250.1				GO:0005829 - cytosol, GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0008152 - metabolic process		
15220	_	JMJ709	_	Jumonji 709			1	JmjC domain containing protein. GO:0000987: core promoter proximal region sequence-specific DNA binding.		Os01g0546900	LOC_Os01g36630.1				GO:0010030 - positive regulation of seed germination, GO:0033749 - histone demethylase activity (H4-R3 specific), GO:0033746 - histone demethylase activity (H3-R2 specific), GO:0005634 - nucleus, GO:0043985 - histone H4-R3 methylation		
15221	_	OsSDS1	_	salt and drought sensitive gene 1			1	OsSDS1 may play a negative role in salt and drought tolerance in plants.	 Tolerance and resistance - Stress tolerance	Os01g0864500	LOC_Os01g64470.1					TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
15222	TRZ2	OsaTRZ2, OsTRZ2	TRNASE Z2	tRNase Z2	TRNASE Z2	osatrz2	9	GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Coloration - Chlorophyll						GO:0042780 - tRNA 3'-end processing, GO:0042781 - 3'-tRNA processing endoribonuclease activity	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content	
15223	TMS5	TRZ1, OsTRZ1, OsaTRZ1, OsTMS5	THERMO-SENSITIVE GENIC MALE STERILE 5	tRNase Z1, thermo-sensitive genic male sterile 5	TRNASE Z1	tms5-1, tms5-2	2	GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os02g0214300 	LOC_Os02g12290.1				GO:0042780 - tRNA 3'-end processing, GO:0042781 - 3'-tRNA processing endoribonuclease activity	TO:0000067 - genic male sterility-thermo sensitive	
15224	TRZ3	OsaTRZ3, OsTRZ3	TRNASE Z3	tRNase Z3	TRNASE Z3		1	GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.		Os01g0232300 	LOC_Os01g13150.1				GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters, GO:0042779 - tRNA 3'-trailer cleavage		
15225	_		_				1	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0118400	LOC_Os01g02900.2, LOC_Os01g02900.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15226	_		_				1	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0118600	LOC_Os01g02910.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15227	_		_				1	Glycosyltransferase	 Biochemical character	Os01g0118700	LOC_Os01g02920.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process		
15228	_		_				1	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0119000	LOC_Os01g02930.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15229	_		_				1	Glycosyltransferase. LOC_Os01g02940.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0119050/Os01g0119100					GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15230	_	RS5, OsRS5	_	raffinose synthase, RAFFINOSE SYNTHASE 5			1	Glycosyltransferase. Q5VQG4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0170000	LOC_Os01g07530.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0005975 - carbohydrate metabolic process, GO:0006979 - response to oxidative stress, GO:0047274 - galactinol-sucrose galactosyltransferase activity, GO:0009507 - chloroplast	TO:0002649 - pesticide sensitivity	
15231	_		_				1	Glycosyltransferase. 	 Biochemical character	Os01g0498300	LOC_Os01g31370.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups		
15232	UGT703A4		UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A4	UDP-glucose-dependent glycosyltransferase 703A4	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A4		1	LOC_Os01g41430. UDP-glucosyltransferase. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0597800	LOC_Os01g41430.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0016021 - integral to membrane, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15233	_		_				1	Glycosyltransferase family protein 1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0622000	LOC_Os01g43380.1					TO:0002649 - pesticide sensitivity	
15234	UGT703A2		UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A2	UDP-glucose-dependent glycosyltransferase 703A2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A2		1	LOC_Os01g45110. UDP-glucosyltransferase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0638000	LOC_Os01g45110.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity	TO:0002649 - pesticide sensitivity	
15235	_		_	Glycosyltransferase 63 kDa subunit precursor, Ribophorin II			1	LOC_Os01g68324. Q5N7W3.	 Biochemical character	Os01g0911200	LOC_Os01g68324.3				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane, GO:0009506 - plasmodesma, GO:0009505 - plant-type cell wall, GO:0009409 - response to cold, GO:0008250 - oligosaccharyltransferase complex, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0005794 - Golgi apparatus, GO:0006487 - protein amino acid N-linked glycosylation		
15236	_		_				1	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0956200	LOC_Os01g72610.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15237	_		_				2	Glycosyltransferase	 Biochemical character	Os02g0131200	LOC_Os02g03850.2, LOC_Os02g03850.1						
15238	_		_				2	Glycosyltransferase	 Biochemical character	Os02g0135500	LOC_Os02g04250.3, LOC_Os02g04250.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups		
15239	_		_				2	Glycosyltransferase	 Biochemical character	Os02g0327700	LOC_Os02g22190.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups		
15241	_		_				2	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0331200	LOC_Os02g22650.2, LOC_Os02g22650.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15242	_	OsGT2	_	glycosyltransferase 2			2	a putative xylosyltransferase (XXT). LOC_Os02g32750.	 Biochemical character	Os02g0529600	LOC_Os02g32750.2, LOC_Os02g32750.1				GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
15243	_	OsGT7	_	glycosyltransferase 7			2	a putative xylosyltransferase (XXT). LOC_Os02g49140.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0723200	LOC_Os02g49140.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process, GO:0016021 - integral to membrane	TO:0002649 - pesticide sensitivity	
15244	UGT85E2		UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 85E2	UDP-glucose-dependent glycosyltransferase 85E2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 85E2		2	LOC_Os02g51910. UDP-glucosyltransferase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0755600	LOC_Os02g51910.1				GO:0008152 - metabolic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0043231 - intracellular membrane-bounded organelle, GO:0016021 - integral to membrane, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity	TO:0002649 - pesticide sensitivity	
15245	_		_	Cytokinin-O-glucosyltransferase2, Cytokinin-O-glucosyltransferase 2			2	UDP-glucosyltransferase. LOC_Os02g51930.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0755900	LOC_Os02g51930.1				GO:0050502 - cis-zeatin O-beta-D-glucosyltransferase activity, GO:0050403 - trans-zeatin O-beta-D-glucosyltransferase activity	TO:0002649 - pesticide sensitivity	
15246	_	OsXXT1, SRH2	_	xyloglucan 6-xylosytransferase 1, short root hair2		srh2	3	Glycosyltransferase. LOC_Os03g18820.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0300000	LOC_Os03g18820.2, LOC_Os03g18820.1				GO:0033843 - xyloglucan 6-xylosyltransferase activity, GO:0005768 - endosome, GO:0005802 - trans-Golgi network, GO:0009969 - xyloglucan biosynthetic process, GO:0016021 - integral to membrane, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0035252 - UDP-xylosyltransferase activity, GO:0048767 - root hair elongation	TO:0002649 - pesticide sensitivity, TO:0002665 - root hair length	
15247	_	OsGT4	_	glycosyltransferase 4			3	a putative xylosyltransferase (XXT). LOC_Os03g19310.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0305800	LOC_Os03g19310.1				GO:0016021 - integral to membrane, GO:0008152 - metabolic process, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0002649 - pesticide sensitivity	
15248	_	OsGT5	_	glycosyltransferase 5			3	a putative xylosyltransferase (XXT). LOC_Os03g19330.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0306100	LOC_Os03g19330.1				GO:0016021 - integral to membrane, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15250	_		_				3	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0808900	LOC_Os03g59430.2					TO:0002649 - pesticide sensitivity	
15251	_		_				3	Dolichyl-phosphate beta-glycosyltransferase	 Biochemical character	Os03g0821800	LOC_Os03g60700.2, LOC_Os03g60700.1				GO:0005783 - endoplasmic reticulum, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process		
15252	_		_				3	Dolichyl-phosphate beta-glycosyltransferase	 Biochemical character	Os03g0824400	LOC_Os03g60939.1				GO:0033185 - dolichol-phosphate-mannose synthase complex, GO:0008152 - metabolic process, GO:0060359 - response to ammonium ion, GO:0005783 - endoplasmic reticulum, GO:0016757 - transferase activity, transferring glycosyl groups		
15253	_	OsGT43H	_	glycosyltransferase family GT43 member H			4	Glycosyltransferase family 43 protein. Q7XTB2. LOC_Os04g01280.	 Biochemical character	Os04g0103100	LOC_Os04g01280.1				GO:0000139 - Golgi membrane, GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity		
15254	_		_				4	Glycosyltransferase	 Biochemical character	Os04g0196600	LOC_Os04g12010.2, LOC_Os04g12010.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process		
15255	_		_				4	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0481100	LOC_Os04g40520.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity	TO:0002649 - pesticide sensitivity	
15256	_		_				4	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0529700	LOC_Os04g44740.1				GO:0008378 - galactosyltransferase activity, GO:0005795 - Golgi stack, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15257	_	OsGT43I, OsGT43B	_	glycosyltransferase family GT43 member I			4	Glycosyltransferase family 43 protein. LOC_Os04g55670. B9FCV3. OsGT43B in Noda et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0650300/Os04g0650366					GO:0008152 - metabolic process, GO:0000139 - Golgi membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0016021 - integral to membrane, GO:0045492 - xylan biosynthetic process	TO:0002649 - pesticide sensitivity	
15258	_	OsGT43A, GT43A	_	glycosyltransferase family GT43 member A			5	Glycosyltransferase family 43 protein. an IRX9 homolog. Q75L84. LOC_Os05g03174.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0123100	LOC_Os05g03174.2, LOC_Os05g03174.1				GO:0042285 - xylosyltransferase activity, GO:0045492 - xylan biosynthetic process, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0010417 - glucuronoxylan biosynthetic process, GO:0009834 - secondary cell wall biogenesis, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	TO:0002649 - pesticide sensitivity	
15259	_		_	Glycosyltransferase 67 kDa subunit precursor, Ribophorin I			5	Q0DJC5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0301500	LOC_Os05g23600.2, LOC_Os05g23600.1				GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity, GO:0006486 - protein amino acid glycosylation, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane	TO:0002649 - pesticide sensitivity	
15260	_		_				5	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0391600	LOC_Os05g32544.2, LOC_Os05g32544.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15261	_	OsGT43E	_	glycosyltransferase family GT43 member E			5	Glycosyltransferase family 43 protein. an IRX9 homolog. Q6AT32. LOC_Os05g48600.	 Biochemical character	Os05g0559600	LOC_Os05g48600.2, LOC_Os05g48600.1				GO:0008152 - metabolic process, GO:0000139 - Golgi membrane, GO:0045492 - xylan biosynthetic process, GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity		
15262	_		_	alkaline alpha-galactosidase			6	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0172800	LOC_Os06g07600.1				GO:0008152 - metabolic process, GO:0050832 - defense response to fungus, GO:0003824 - catalytic activity	TO:0002649 - pesticide sensitivity, TO:0000074 - blast disease	
15263	_		_				6	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0311000	LOC_Os06g20570.1					TO:0002649 - pesticide sensitivity	
15264	_		_				6	Glycosyltransferase	 Biochemical character	Os06g0470000	LOC_Os06g27560.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process		
15265	_		_				6	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0475400	LOC_Os06g28124.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15266	_		_				6	Glycosyltransferase	 Biochemical character	Os06g0602800	LOC_Os06g40060.2, LOC_Os06g40060.1				GO:0016020 - membrane, GO:0008375 - acetylglucosaminyltransferase activity, GO:0008152 - metabolic process		
15267	XYXT1	OsXYXT1	XYLAN XYLOSYLTRANSFERASE 1	xylan xylosyltransferase1	XYLAN XYLOSYLTRANSFERASE 1		6	LOC_Os06g49300. Glycosyltransferase GT61 family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0707000	LOC_Os06g49300.1				GO:0005794 - Golgi apparatus, GO:0042285 - xylosyltransferase activity, GO:0045492 - xylan biosynthetic process, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15268	_		_				6	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0707200	LOC_Os06g49320.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15269	_		_				7	Glycosyltransferase	 Biochemical character	Os07g0209100	LOC_Os07g10840.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
15270	_		_				7	Glycosyltransferase	 Biochemical character	Os07g0567300	LOC_Os07g37990.1				GO:0008152 - metabolic process, GO:0005795 - Golgi stack, GO:0008378 - galactosyltransferase activity		
15271	_		_				7	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0657400	LOC_Os07g46380.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15272	_	OsGT43G	_	glycosyltransferase family GT43 member G			10	Glycosyltransferase family 43 protein. Q8S626. LOC_Os10g13810.	 Biochemical character	Os10g0205300	LOC_Os10g13810.1				GO:0000139 - Golgi membrane, GO:0010584 - pollen exine formation, GO:0042285 - xylosyltransferase activity, GO:0016021 - integral to membrane, GO:0009834 - secondary cell wall biogenesis, GO:0010417 - glucuronoxylan biosynthetic process, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity		
15273	_		_				10	Glycosyltransferase	 Biochemical character	Os10g0492200	LOC_Os10g35020.2, LOC_Os10g35020.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process		
15274	_		_				10	Glycosyltransferase family protein 1	 Biochemical character	Os10g0546200	LOC_Os10g39900.1				GO:0009058 - biosynthetic process		
15275	_	OsGT6	_	glycosyltransferase 6			11	a putative xylosyltransferase (XXT). LOC_Os11g34390.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0546500	LOC_Os11g34390.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0005802 - trans-Golgi network, GO:0005768 - endosome	TO:0002649 - pesticide sensitivity	
15276	_		_				12	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0238900	LOC_Os12g13640.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15277	_		_				12	Glycosyltransferase	 Biochemical character	Os12g0555400	LOC_Os12g36870.1						
15278	DWA1	DWA1	DROUGHT-INDUCED WAX ACCUMULATION 1	Drought-Induced Wax Accumulation 1		dwa1	4	LOC_Os04g39780.	 Tolerance and resistance - Stress tolerance	Os04g0473850/Os04g0473900					GO:0004096 - catalase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress	TO:0000276 - drought tolerance, TO:0000709 - leaf gloss	
15279	WSL2	OsGL1-1, WSL2	WAX CRYSTAL-SPARSE LEAF 2	Glossy1-homologous gene 1, Wax crystal-sparse leaf2, Wax crystal-sparse leaf 2		osgl1-1, wsl2	9	LOC_Os09g25850. a rice homologue of WAX2/GL1. a member of WAX2-like protein family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0426800	LOC_Os09g25850.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding, GO:0010025 - wax biosynthetic process, GO:0010166 - wax metabolic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0000188 - drought sensitivity, TO:0000709 - leaf gloss	
15280	_	OsGL1-2	_	Glossy1-homologous gene 2		osgl1-2	2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0178800	LOC_Os02g08230.2, LOC_Os02g08230.1				GO:0016491 - oxidoreductase activity, GO:0010025 - wax biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding, GO:0046184 - aldehyde biosynthetic process, GO:0016021 - integral to membrane, GO:0043447 - alkane biosynthetic process	TO:0000276 - drought tolerance, TO:0000709 - leaf gloss	
15281	_	OsGL1-7, CER2, CER1, OsCER1, OsCER2	_	Glossy1-homologous gene 7, ECERIFERUM2, ECERIFERUM1			4	CoA-dependent acyltransferase. LOC_Os04g43270. Os04g0512100 (in Rap1 (build3)).	 Biochemical character								
15282	_	OsGL1-8, GL1-8	_	Glossy1-homologous gene 8			7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0101500	LOC_Os07g01150.3, LOC_Os07g01150.2, LOC_Os07g01150.1				GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0080065 - 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity, GO:0009941 - chloroplast envelope, GO:0006633 - fatty acid biosynthetic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
15283	_	OsGL1-9	_	Glossy1-homologous gene 9			7		 Biochemical character	Os07g0627700	LOC_Os07g43460.1				GO:0005506 - iron ion binding, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0006633 - fatty acid biosynthetic process		
15284	_	OsGL1-10	_	Glossy1-homologous gene 10			10		 Biochemical character	Os10g0545200	LOC_Os10g39810.2, LOC_Os10g39810.1				GO:0005506 - iron ion binding, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0006633 - fatty acid biosynthetic process		
15285	_	OsGL1-11	_	Glossy1-homologous gene 11			11		 Biochemical character	Os11g0707600	LOC_Os11g48020.1				GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding		
15286	WSL1	WSL1, FAE', OsFAE1', OsCER6	WAX CRYSTAL-SPARSE LEAF 1	Wax Crystal-Sparse Leaf1, FATTY ACID ELONGATION1', fatty acid elongase 1', ECERIFERUM 6	BETA-KETOACYL COA SYNTHASE		6	one of the beta-ketoacyl CoA synthase genes. OsCER6 in Mao et al. 2012. a rice homologue of A. thaliana wax synthesis-related gene.	 Biochemical character	Os06g0598800	LOC_Os06g39750.3, LOC_Os06g39750.2, LOC_Os06g39750.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0006633 - fatty acid biosynthetic process, GO:0016020 - membrane	TO:0000709 - leaf gloss	
15287	LACS7	LACS7	LONG-CHAIN ACYL-COA SYNTHETASE 7	long-chain acyl-CoA synthetase 7	LONG-CHAIN ACYL-COA SYNTHETASE 7		12	LOC_Os12g04990. AMP-binding enzyme family.	 Biochemical character	Os12g0143900	LOC_Os12g04990.5, LOC_Os12g04990.4, LOC_Os12g04990.3, LOC_Os12g04990.2, LOC_Os12g04990.1				GO:0003824 - catalytic activity	TO:0000709 - leaf gloss	
15288	LACS8	LACS8	LONG-CHAIN ACYL-COA SYNTHETASE 8	long-chain acyl-CoA synthetase 8	LONG-CHAIN ACYL-COA SYNTHETASE 8		5		 Biochemical character	Os05g0317200	LOC_Os05g25310.2, LOC_Os05g25310.1				GO:0009941 - chloroplast envelope, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0003824 - catalytic activity	TO:0000709 - leaf gloss	
15289	NUC1	OsNUC1, OsNUC1-S, OsNUC1-L	NUCLEOLIN 1	nucleolin 1, OsNucleolin1-L, OsNucleolin1-S	NUCLEOLIN 1		4	Q7XTT4. DQ012289. longer form: OsNUC1-L (AK103446) and shorter form: OsNUC1-S(AK063918).	 Tolerance and resistance - Stress tolerance	Os04g0620700	LOC_Os04g52960.1				GO:0008643 - carbohydrate transport, GO:0045913 - positive regulation of carbohydrate metabolic process, GO:0006364 - rRNA processing, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0005730 - nucleolus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000371 - yield trait, TO:0001027 - net photosynthetic rate, TO:0000522 - stomatal conductance, TO:0001018 - transpiration rate, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content	
15290	_	OsCTR1	_	chloroplast targeting RING E3 ligase 1			4	LOC_Os04g16970.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0243700	LOC_Os04g16970.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
15291	_	OsCP12	_	chloroplast protein 12, Calvin cycle protein CP12			3	LOC_Os03g19380. GO:0080153: negative regulation of reductive pentose-phosphate cycle.		Os03g0306800	LOC_Os03g19380.1				GO:0009744 - response to sucrose stimulus, GO:0009941 - chloroplast envelope, GO:0043234 - protein complex		
15292	_	OsRP1	_	ribosomal protein 1			11	Q0IQF7. LOC_Os11g03400.		Os11g0127900	LOC_Os11g03400.1				GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0003735 - structural constituent of ribosome, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0006412 - translation, GO:0022627 - cytosolic small ribosomal subunit, GO:0016020 - membrane		
15293	_	OsMASP1	_	mitochondrial ATP synthase precursor 1			2		 Biochemical character	Os02g0131300	LOC_Os02g03860.1				GO:0050897 - cobalt ion binding, GO:0009555 - pollen development, GO:0005507 - copper ion binding, GO:0008270 - zinc ion binding, GO:0005753 - mitochondrial proton-transporting ATP synthase complex, GO:0005730 - nucleolus, GO:0009507 - chloroplast		
15294	_	OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2	_	phospho-2-dehydro-3-deoxyheptonate aldolase, 3-deoxy-D-arabinoheptulosonate 7-phosphate synthase, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2			7	Q75W16. AB122058. OsDAHPS2 in Sato et al. 2006, Kishi-Kaboshi et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0622200	LOC_Os07g42960.2, LOC_Os07g42960.1				GO:0009411 - response to UV, GO:0009423 - chorismate biosynthetic process, GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009507 - chloroplast	TO:0000160 - UV light sensitivity	
15295	_	OsXYLA1	_	xylose isomerase			7	Q75W16.	 Biochemical character	Os07g0669100	LOC_Os07g47290.3, LOC_Os07g47290.1				GO:0042732 - D-xylose metabolic process, GO:0009045 - xylose isomerase activity, GO:0005794 - Golgi apparatus, GO:0005774 - vacuolar membrane, GO:0005783 - endoplasmic reticulum, GO:0046872 - metal ion binding, GO:0006098 - pentose-phosphate shunt		
15296	_	OsCYP450	_	cytochrome P450			5		 Biochemical character	Os05g0445100	LOC_Os05g37250.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity		
15297	_	OsHCI1, E3UL	_	heat and cold induced 1, RING domain-containing E3 ubiquitin ligase			10	a RING finger E3 ligase. LOC_Os10g30850.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0445400	LOC_Os10g30850.2, LOC_Os10g30850.1				GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
15298	_	OsBGLU1	_	periplasmic beta-glucosidase 1			3		 Biochemical character	Os03g0749300	LOC_Os03g53800.5, LOC_Os03g53800.4, LOC_Os03g53800.3, LOC_Os03g53800.2, LOC_Os03g53800.1				GO:0005886 - plasma membrane, GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
15299	_	OsbHLH065, OsbHLH65	_	basic helix-loop-helix protein 065			4	ethylene-responsive protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os04g0493100	LOC_Os04g41570.3, LOC_Os04g41570.2, LOC_Os04g41570.1				GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus, GO:0009751 - response to salicylic acid stimulus, GO:0009628 - response to abiotic stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000168 - abiotic stress trait, TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance, TO:0000401 - plant growth hormone sensitivity	
15300	_	OsGRP1	_	glycine-rich cell-wall structural protein 1			5			Os05g0119200	LOC_Os05g02770.1						
15301	_	OsbHLH007	_	basic helix-loop-helix protein 007			4			Os04g0300600	LOC_Os04g23440.1				GO:0005634 - nucleus		
15302	_	OsbHLH008, bHLH008, OsMYL2, MYL2	_	basic helix-loop-helix protein 008, OsMYC2-like protein 2, MYC2-like protein 2			1		 Tolerance and resistance	Os01g0235700	LOC_Os01g13460.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006952 - defense response	TO:0000236 - crop damage resistance, TO:0000179 - biotic stress trait, TO:0000172 - jasmonic acid sensitivity	
15303	_	OsbHLH009, bHLH009, OsMYC2, MYC2	_	basic helix-loop-helix protein 009			10	functional orthologue of AtMYC2. a homolog of Arabidopsis MYC2. GO:2000068: regulation of defense response to insect. GO:1900057: positive regulation of leaf senescence. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Leaf,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0575000	LOC_Os10g42430.1				GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0006952 - defense response, GO:0009269 - response to desiccation, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0010200 - response to chitin, GO:0043619 - regulation of transcription from RNA polymerase II promoter in response to oxidative stress, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009718 - anthocyanin biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009689 - induction of phytoalexin biosynthetic process, GO:0002213 - defense response to insect, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010150 - leaf senescence, GO:0051090 - regulation of transcription factor activity, GO:0009646 - response to absence of light, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0010100 - negative regulation of photomorphogenesis, GO:0031348 - negative regulation of defense response	TO:0000172 - jasmonic acid sensitivity, TO:0000657 - spikelet anatomy and morphology trait, TO:0000261 - insect damage resistance, TO:0000249 - leaf senescence, TO:0000075 - light sensitivity, TO:0000495 - chlorophyll content, TO:0000621 - inflorescence development trait, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000276 - drought tolerance	PO:0001054 - 4 leaf senescence stage , PO:0001083 - inflorescence development stage 
15304	_	OsbHLH011	_	basic helix-loop-helix protein 011			8			Os08g0543700	LOC_Os08g43070.1				GO:0005634 - nucleus		
15305	_	OsbHLH012	_	basic helix-loop-helix protein 012			1			Os01g0576100	LOC_Os01g39480.1						
15306	_	OsbHLH014	_	basic helix-loop-helix protein 014			11			Os11g0258700	LOC_Os11g15210.1						
15307	_	OsbHLH015, OsGL3B, GL3B	_	basic helix-loop-helix protein 015, GLABRA3B, GLABRA 3B			4	LOC_Os04g47040. a homologue of Arabidopsis transcription factor GL3.	 Other	Os04g0557200	LOC_Os04g47040.1						
15308	_	OsbHLH016, Kala4, OSB2	_	"basic helix-loop-helix protein 016, Key gene for
black coloration by anthocyanin accumulation on chromosome 4"			4	AB021080. Both Pb (PURPLE PERICARP B) and Kala4 map to a region between RM1354 and RM7210 on chromosome 4 and it is suggest that Pb is an allele of Kala4 (Maeda et al. 2014). an R/B-type regulatory gene. OSB1 (Os04g0557800) and OSB2 (Os04g0557500) are the major components of the Plw allele (Sakamoto et al. 2001).	 Coloration - Anthocyanin,  Seed	Os04g0557500	LOC_Os04g47059.1				GO:0031542 - positive regulation of anthocyanin biosynthetic process	TO:0000707 - pericarp color, TO:0000071 - anthocyanin content	
15309	_	OsbHLH018	_	basic helix-loop-helix protein 018			3			Os03g0725800	LOC_Os03g51580.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
15310	_	OsbHLH019	_	basic helix-loop-helix protein 019			3			Os03g0229100	LOC_Os03g12760.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
15311	_	OsbHLH020, bHLH020, bHLH20	_	basic helix-loop-helix protein 020			3	LOC_Os03g46860. HQ858862. bHLH transcription factor.	 Other	Os03g0671800	LOC_Os03g46860.1				GO:0003677 - DNA binding		
15312	_	OsbHLH021	_	basic helix-loop-helix protein 021			12			Os12g0632600	LOC_Os12g43620.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15313	_	OsbHLH022	_	basic helix-loop-helix protein 022			3			Os03g0671000	LOC_Os03g46790.1				GO:0003677 - DNA binding		
15314	_	OsbHLH023	_	basic helix-loop-helix protein 023			10			Os10g0104300	LOC_Os10g01530.1				GO:0003677 - DNA binding		
15315	_	OsbHLH024	_	basic helix-loop-helix protein 024			1		 Tolerance and resistance - Stress tolerance	Os01g0575200	LOC_Os01g39330.1				GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus	TO:0000168 - abiotic stress trait	
15316	DPF	OsbHLH025, bHLH025, bHLH25	DITERPENIOD PHYTOALEXIN FACTOR	basic helix-loop-helix protein 025	DITERPENIOD PHYTOALEXIN FACTOR		1	HQ858870. bHLH transcription factor. Overexpressor accumulates diterpenoid phytoalexins, i.e. momilactones and phytocassanes. Knock-down rice does not accumulate them compared to WT.	 Other	Os01g0196300	LOC_Os01g09990.2, LOC_Os01g09990.1				GO:0050832 - defense response to fungus, GO:0005634 - nucleus	TO:0000074 - blast disease	
15317	_	OsbHLH026	_	basic helix-loop-helix protein 026			1	LOC_Os01g09930.			LOC_Os01g09930						
15318	_	OsbHLH027	_	basic helix-loop-helix protein 027			1	LOC_Os01g09900.		Os01g0195700/Os01g0195801							
15319	_	OsbHLH028	_	basic helix-loop-helix protein 028			5			Os05g0199800	LOC_Os05g11070.1						
15320	_	OsbHLH029	_	basic helix-loop-helix protein 029			2			Os02g0221100	LOC_Os02g12820.1						
15321	_	OsbHLH030	_	basic helix-loop-helix protein 030			6			Os06g0570900	LOC_Os06g37410.1						
15322	_	OsbHLH031	_	basic helix-loop-helix protein 031			8	HQ858865. bHLH transcription factor.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0490000	LOC_Os08g38210.5, LOC_Os08g38210.4, LOC_Os08g38210.2, LOC_Os08g38210.1				GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus	TO:0000168 - abiotic stress trait	
15323	_	OsbHLH032	_	basic helix-loop-helix protein 032			9			Os09g0475400	LOC_Os09g29930.3, LOC_Os09g29930.2, LOC_Os09g29930.1				GO:0005634 - nucleus		
15324	_	OsbHLH033, bHLH033, bHLH33, OsZFP, ZFP	_	basic helix-loop-helix protein 033, zinc finger protein			1	Q943I6.	 Tolerance and resistance - Disease resistance,  Other	Os01g0871200	LOC_Os01g65080.4, LOC_Os01g65080.3, LOC_Os01g65080.2, LOC_Os01g65080.1				GO:0019048 - virus-host interaction, GO:0046872 - metal ion binding, GO:0010447 - response to acidity, GO:0010044 - response to aluminum ion, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding	TO:0000020 - black streak dwarf virus resistance	
15325	_	OsbHLH034	_	basic helix-loop-helix protein 034			2			Os02g0726700	LOC_Os02g49480.1				GO:0005634 - nucleus		
15326	_	OsbHLH035, bHLH035, OsbHLH35, bHLH35	_	basic helix-loop-helix protein 035		Osbhlh035	1	LOC_Os01g06640.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os01g0159800	LOC_Os01g06640.1, LOC_Os01g06640.2, LOC_Os01g06640.3				GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0010030 - positive regulation of seed germination, GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus	TO:0002667 - abscisic acid content, TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait	PO:0005052 - plant callus , PO:0009089 - endosperm , PO:0005360 - aleurone layer , PO:0020110 - scutellum , PO:0020033 - coleoptile , PO:0020100 - hypocotyl , PO:0009015 - portion of vascular tissue , PO:0000025 - root tip , PO:0009009 - plant embryo , PO:0009010 - seed 
15327	_	OsbHLH036	_	basic helix-loop-helix protein 036			5			Os05g0163900	LOC_Os05g07120.2, LOC_Os05g07120.1				GO:0016597 - amino acid binding, GO:0005634 - nucleus, GO:0008152 - metabolic process		
15328	_	OsbHLH037, bHLH037	_	basic helix-loop-helix protein 037			1			Os01g0218100	LOC_Os01g11910.1				GO:0005634 - nucleus		PO:0009005 - root 
15329	_	OsbHLH038	_	basic helix-loop-helix protein 038			8	LOC_Os08g33590. qTAC8 (a QTL controlling rice tiller angle) candidate.		Os08g0432800	LOC_Os08g33590.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15330	_	OsbHLH039	_	basic helix-loop-helix protein 039			9			Os09g0410700	LOC_Os09g24490.1				GO:0005634 - nucleus		
15331	_	OsbHLH040	_	basic helix-loop-helix protein 040			3			Os03g0260600	LOC_Os03g15440.1				GO:0003677 - DNA binding		
15332	_	OsbHLH041	_	basic helix-loop-helix protein 041			3			Os03g0811400	LOC_Os03g59670.1				GO:0003677 - DNA binding, GO:0009941 - chloroplast envelope, GO:0005634 - nucleus		
15333	_	OsbHLH042, bHLH042	_	basic helix-loop-helix protein 042			8			Os08g0477900	LOC_Os08g37290.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
15334	_	OsbHLH043	_	basic helix-loop-helix protein 043			9			Os09g0463900	LOC_Os09g28900.1						
15335	_	OsbHLH044, bHLH044, OsbHLH96, bHLH96, bHLH096	_	basic helix-loop-helix protein 044			3	HQ858866. bHLH transcription factor. OsbHLH96 in Wang et al. 2019.	 Tolerance and resistance - Insect resistance,  Other	Os03g0188400	LOC_Os03g08930.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0002213 - defense response to insect, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000424 - brown planthopper resistance	
15336	_	OsbHLH045	_	basic helix-loop-helix protein 045			10			Os10g0376900	LOC_Os10g23050.1				GO:0003677 - DNA binding		
15337	_	OsbHLH046	_	basic helix-loop-helix protein 046			9			Os09g0468700	LOC_Os09g29360.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15338	_	OsbHLH047, bHLH047	_	basic helix-loop-helix protein 047			8	HQ858861. bHLH transcription factor.	 Other	Os08g0483900	LOC_Os08g37730.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
15339	_	OsbHLH048	_	basic helix-loop-helix protein 048			2			Os02g0759000	LOC_Os02g52190.1						
15340	_	OsbHLH049	_	basic helix-loop-helix protein 049			2			Os02g0691500	LOC_Os02g46560.1				GO:0005634 - nucleus		
15341	_	OsbHLH050	_	basic helix-loop-helix protein 050			4			Os04g0590800	LOC_Os04g50090.1						
15342	_	OsbHLH051	_	basic helix-loop-helix protein 051			5			Os05g0586300	LOC_Os05g50900.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0051782 - negative regulation of cell division, GO:0010052 - guard cell differentiation, GO:0016597 - amino acid binding, GO:0008152 - metabolic process, GO:0045597 - positive regulation of cell differentiation		
15343	_	OsbHLH052	_	basic helix-loop-helix protein 052			3			Os03g0122100	LOC_Os03g03000.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15344	_	OsbHLH053, bHLH053, OsSPCH2, SPCH2	_	basic helix-loop-helix protein 053, SPEECHLESS 2			2	LOC_Os02g15760.		Os02g0257500	LOC_Os02g15760.1				GO:0005634 - nucleus		
15345	_	OsbHLH054	_	basic helix-loop-helix protein 054			6			Os06g0526100	LOC_Os06g33450.2, LOC_Os06g33450.1				GO:0005634 - nucleus		
15346	_	OsbHLH055	_	basic helix-loop-helix protein 055			5			Os05g0597000	LOC_Os05g51820.1				GO:0005634 - nucleus, GO:0010374 - stomatal complex development		
15347	_	OsbHLH057	_	basic helix-loop-helix protein 057			7			Os07g0543000	LOC_Os07g35870.2, LOC_Os07g35870.1						
15348	_	OsbHLH058	_	basic helix-loop-helix protein 058			5			Os05g0455400	LOC_Os05g38140.1				GO:0005634 - nucleus		
15349	_	OsbHLH059, bHLH059, OsbHLH59, bHLH59	_	basic helix-loop-helix protein 059			2	HQ858854. bHLH transcription factor. LOC_Os02g02480.	 Tolerance and resistance,  Other	Os02g0116600	LOC_Os02g02480.3, LOC_Os02g02480.2, LOC_Os02g02480.1				GO:0005829 - cytosol, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0005634 - nucleus	TO:0000172 - jasmonic acid sensitivity	
15350	_	OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1	_	basic helix-loop-helix protein 060, POSITIVE REGULATOR OF IRON HOMEOSTASIS1, POSITIVE REGULATOR OF IRON HOMEOSTASIS 1		pri1, pri1-1, pri1-2, pri1-3	8	LOC_Os08g04390. HQ858852. bHLH transcription factor. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0138500	LOC_Os08g04390.2				GO:0055072 - iron ion homeostasis, GO:0005634 - nucleus		
15351	_	OsbHLH061	_	basic helix-loop-helix protein 061			11	LOC_Os11g38870.	 Tolerance and resistance - Stress tolerance	Os11g0601650/Os11g0601700					GO:0003677 - DNA binding, GO:0005634 - nucleus		
15352	_	OsbHLH064	_	basic helix-loop-helix protein 064			2	HQ858850. bHLH transcription factor.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0433600	LOC_Os02g23823.3, LOC_Os02g23823.2, LOC_Os02g23823.1				GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus	TO:0000168 - abiotic stress trait	
15353	_	OsbHLH066	_	basic helix-loop-helix protein 066			3	HQ858876. bHLH transcription factor.	 Other	Os03g0759700	LOC_Os03g55220.2, LOC_Os03g55220.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15354	_	OsbHLH067	_	basic helix-loop-helix protein 067			5			Os05g0501200	LOC_Os05g42180.1				GO:0005634 - nucleus		
15355	_	OsbHLH068, bHLH068, bHLH68	_	basic helix-loop-helix protein 068			4	GO:1901000: regulation of response to salt stress. GO:2000280: regulation of root development. a homologous gene of AtbHLH112.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os04g0631600	LOC_Os04g53990.1				GO:0010029 - regulation of seed germination, GO:0009651 - response to salt stress, GO:2000028 - regulation of photoperiodism, flowering, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002616 - flowering time	
15356	_	OsbHLH069	_	basic helix-loop-helix protein 069			1			Os01g0784900	LOC_Os01g57580.1						
15357	_	OsbHLH070	_	basic helix-loop-helix protein 070			8			Os08g0179400	LOC_Os08g08160.1						
15358	_	OsbHLH071, bHLH071, bHLH71	_	basic helix-loop-helix protein 071			1	LOC_Os01g01600. GO:0001046: core promoter sequence-specific DNA binding. GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding.		Os01g0105700	LOC_Os01g01600.1				GO:0005634 - nucleus, GO:0046983 - protein dimerization activity, GO:0006366 - transcription from RNA polymerase II promoter		
15359	_	OsbHLH072	_	basic helix-loop-helix protein 072			2			Os02g0276900	LOC_Os02g17680.1						
15360	_	OsbHLH073	_	basic helix-loop-helix protein 073			5			Os05g0228400	LOC_Os05g14010.1				GO:0005634 - nucleus		
15361	_	OsbHLH074	_	basic helix-loop-helix protein 074			1			Os01g0230200	LOC_Os01g13000.1				GO:0005634 - nucleus		
15362	_	OsbHLH075	_	basic helix-loop-helix protein 075			4			Os04g0565900	LOC_Os04g47810.1				GO:0005634 - nucleus		
15363	_	OsbHLH076	_	basic helix-loop-helix protein 076			2			Os02g0671300	LOC_Os02g45010.1						
15364	_	OsbHLH077	_	basic helix-loop-helix protein 077			7			Os07g0471900	LOC_Os07g28890.1						
15365	_	OsbHLH078	_	basic helix-loop-helix protein 078			3			Os03g0279500	LOC_Os03g17130.1				GO:0003677 - DNA binding		
15366	_	OsbHLH079, OsbHLH79, bHLH079, bHLH79	_	basic helix-loop-helix protein 079			2			Os02g0705500	LOC_Os02g47660.1				GO:0003700 - transcription factor activity, GO:0046983 - protein dimerization activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
15367	_	OsbHLH080	_	basic helix-loop-helix protein 080			8			Os08g0536800	LOC_Os08g42470.1				GO:0005634 - nucleus		
15368	_	OsbHLH081, bHLH081, OsBC1, BC1	_	basic helix-loop-helix protein 081, OsBUL1 COMPLEX1, BUL1 COMPLEX 1, BU1-LIKE 1 COMPLEX1, BU-LIKE1 COMPLEX1			9	LOC_Os09g33580.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits	Os09g0510500	LOC_Os09g33580.2, LOC_Os09g33580.1				GO:0051510 - regulation of unidimensional cell growth, GO:0009741 - response to brassinosteroid stimulus	TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle, TO:0000207 - plant height, TO:0002687 - cell elongation trait, TO:0002688 - leaf lamina joint bending	
15369	_	OsbHLH082	_	basic helix-loop-helix protein 082			9	LOC_Os09g33580.		Os09g0510500	LOC_Os09g33580.2, LOC_Os09g33580.1						
15370	_	OsbHLH083	_	basic helix-loop-helix protein 083			5	HQ858853. bHLH transcription factor.	 Other	Os05g0103000	LOC_Os05g01256.2, LOC_Os05g01256.1				GO:0005634 - nucleus		
15371	_	OsbHLH084	_	basic helix-loop-helix protein 084			3			Os03g0728900	LOC_Os03g51910.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
15372	_	OsbHLH085	_	basic helix-loop-helix protein 085			9	HQ858863. bHLH transcription factor.	 Other	Os09g0474100	LOC_Os09g29830.3, LOC_Os09g29830.2, LOC_Os09g29830.1				GO:0005634 - nucleus		
15373	_	OsbHLH086, TA1	_	basic helix-loop-helix protein 086, Transcriptional Activator protein 1			6	HQ858872. bHLH transcription factor. AP003044. FJ581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species).	 Other	Os06g0275600	LOC_Os06g16400.3, LOC_Os06g16400.2, LOC_Os06g16400.1				GO:0005634 - nucleus		
15374	_	OsbHLH087	_	basic helix-loop-helix protein 087			8			Os08g0487700	LOC_Os08g38080.1				GO:0005634 - nucleus		
15375	_	OsbHLH088	_	basic helix-loop-helix protein 088			3	LOC_Os03g12940.		Os03g0231950	LOC_Os03g12940.2, LOC_Os03g12940.1				GO:0003677 - DNA binding		
15376	_	OsbHLH089, bHLH089, bHLH89	_	basic helix-loop-helix protein 089			3	LOC_Os03g58830. HQ858847. bHLH transcription factor.	 Other	Os03g0802900	LOC_Os03g58830.1				GO:0048446 - petal morphogenesis, GO:0005634 - nucleus		
15377	_	OsbHLH090	_	basic helix-loop-helix protein 090			1	AJ575238. HQ858864. bHLH transcription factor.	 Seed,  Other	Os01g0915600	LOC_Os01g68700.2, LOC_Os01g68700.1				GO:0005634 - nucleus	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15378	_	OsbHLH091, bHLH091	_	basic helix-loop-helix protein 091			8	HQ858869. bHLH transcription factor. PO:0030123: panicle inflorescence.	 Other	Os08g0524800	LOC_Os08g41320.1				GO:0005634 - nucleus		
15379	_	OsbHLH092	_	basic helix-loop-helix protein 092			9		 Tolerance and resistance - Stress tolerance	Os09g0501600	LOC_Os09g32510.5, LOC_Os09g32510.4, LOC_Os09g32510.3, LOC_Os09g32510.2, LOC_Os09g32510.1				GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus	TO:0000168 - abiotic stress trait	
15380	_	OsbHLH094, bHLH094, bHLH94	_	basic helix-loop-helix protein 094			7	LOC_Os07g09590.		Os07g0193800	LOC_Os07g09590.1						
15381	_	OsbHLH095, bHLH095	_	basic helix-loop-helix protein 095			6	PO:0030123: panicle inflorescence.		Os06g0613500	LOC_Os06g41060.1						
15382	_	OsbHLH097	_	basic helix-loop-helix protein 097			2	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os02g35660.		Os02g0564700	LOC_Os02g35660.1				GO:0005634 - nucleus		
15383	_	OsbHLH098	_	basic helix-loop-helix protein 098			3	HQ858867. bHLH transcription factor. a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os03g58330.	 Other	Os03g0797600	LOC_Os03g58330.1				GO:0005634 - nucleus		
15384	_	OsbHLH099	_	basic helix-loop-helix protein 099			7	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os07g08440.		Os07g0182200	LOC_Os07g08440.1				GO:0031347 - regulation of defense response, GO:0009567 - double fertilization forming a zygote and endosperm		
15385	_	OsbHLH100	_	basic helix-loop-helix protein 100			9	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os09g25040.		Os09g0417400	LOC_Os09g25040.1				GO:0005634 - nucleus		
15386	_	OsbHLH101	_	basic helix-loop-helix protein 101			4			Os04g0618600	LOC_Os04g52770.1				GO:0005634 - nucleus		
15387	_	OsbHLH105	_	basic helix-loop-helix protein 105			1	LOC_Os01g18290 (not found in MSU Rice Genome Annotation Project Release 7 data).							GO:0005634 - nucleus		
15388	LGS1	OsbHLH107, bHLH107	LARGER GRAIN SIZE 1	basic helix-loop-helix protein 107, larger grain size 1		lgs1	2	LOC_Os02g56140.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os02g0805250	LOC_Os02g56140.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity	TO:0000396 - grain yield, TO:0000397 - grain size	
15389	_	OsbHLH108, OsbHLH108/SPT, bHLH108, SPT	_	basic helix-loop-helix protein 108, OsSPATULA, SPATULA			6	LOC_Os06g06900. related to Arabidopsis SPATULA.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0164400	LOC_Os06g06900.1				GO:0048437 - floral organ development	TO:0000622 - flower development trait	PO:0009049 - inflorescence , PO:0007615 - flower development stage 
15390	_	OsbHLH109, bHLH109	_	basic helix-loop-helix protein 109			1	HQ858859. HQ858868. bHLH transcription factor.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0900800	LOC_Os01g67480.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
15391	_	OsbHLH110	_	basic helix-loop-helix protein 110			2		 Tolerance and resistance - Stress tolerance	Os02g0603600	LOC_Os02g39140.2, LOC_Os02g39140.1				GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
15392	_	OsbHLH111	_	basic helix-loop-helix protein 111			4			Os04g0489600	LOC_Os04g41229.2, LOC_Os04g41229.1						
15393	_	OsbHLH113, bHLH113	_	basic helix-loop-helix protein 113			10		 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os10g0556200	LOC_Os10g40740.1				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000207 - plant height, TO:0000276 - drought tolerance	
15394	_	OsbHLH114	_	basic helix-loop-helix protein 114			2	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os02g55250.		Os02g0795800	LOC_Os02g55250.1						
15395	RHL1	OsbHLH115, OsRHL1	ROOTHAIRLESS1	basic helix-loop-helix protein 115, ROOTHAIRLESS 1		Osrhl1-1, Osrhl1-2, osrhl1, rhl1	6	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os06g08500.	 Vegetative organ - Root	Os06g0184000	LOC_Os06g08500.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0048767 - root hair elongation	TO:0002665 - root hair length, TO:0000656 - root development trait	PO:0007519 - 5 root hair formation stage 
15396	_	OsbHLH116	_	basic helix-loop-helix protein 116			12	LOC_Os12g40730.		Os12g0599400/Os12g0599550							
15397	_	OsbHLH117	_	basic helix-loop-helix protein 117			1	LOC_Os01g38610.		Os01g0566800/Os01g0566701							
15398	_	OsbHLH118	_	basic helix-loop-helix protein 118			1			Os01g0707500	LOC_Os01g51140.2, LOC_Os01g51140.1				GO:0005634 - nucleus		
15399	_	OsbHLH120, bHLH120	_	basic helix-loop-helix protein 120			9	LOC_Os09g28210. qRT9 (a quantitative trait locus controlling root thickness and root length) candidate.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os09g0455300	LOC_Os09g28210.1				GO:0010500 - transmitting tissue development, GO:0005634 - nucleus, GO:0048462 - carpel formation, GO:0080126 - ovary septum development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000227 - root length, TO:0000306 - root thickness	
15400	_	OsbHLH121	_	basic helix-loop-helix protein 121			8	LOC_Os08g36740.		Os08g0471401	LOC_Os08g36740.1				GO:0010500 - transmitting tissue development, GO:0048462 - carpel formation, GO:0080126 - ovary septum development		
15401	_	OsbHLH122	_	basic helix-loop-helix protein 122			6			Os06g0210600	LOC_Os06g10820.1						
15402	_	OsbHLH124	_	basic helix-loop-helix protein 124			8			Os08g0108500	LOC_Os08g01700.1						
15403	_	OsbHLH125, bHLH125, OsRSL1, RSL1	_	basic helix-loop-helix protein 125, ROOT HAIR DEFECTIVE-SIX LIKE 1		Osrsl1, Osrsl1-1	1	HQ858858. bHLH transcription factor. an RSL class I gene.	 Vegetative organ - Root,  Other	Os01g0111500	LOC_Os01g02110.1				GO:0048765 - root hair cell differentiation, GO:0048767 - root hair elongation	TO:0002665 - root hair length	
15404	_	OsbHLH126, bHLH126, OsRSL2, RSL2	_	basic helix-loop-helix protein 126, ROOT HAIR DEFECTIVE-SIX LIKE 2		Osrsl2, Osrsl2-1	2	an RSL class I gene.	 Vegetative organ - Root	Os02g0710300	LOC_Os02g48060.1				GO:0048765 - root hair cell differentiation, GO:0048767 - root hair elongation	TO:0002665 - root hair length	
15405	_	OsbHLH127, bHLH127, OsRSL3, RSL3	_	basic helix-loop-helix protein 127, ROOT HAIR DEFECTIVE-SIX LIKE 3			6	an RSL class I gene.	 Vegetative organ - Root	Os06g0496400	LOC_Os06g30090.1				GO:0048765 - root hair cell differentiation, GO:0048767 - root hair elongation, GO:0005634 - nucleus	TO:0002665 - root hair length	
15406	_	OsbHLH128, bHLH128, OsRSL6, RSL6	_	basic helix-loop-helix protein 128, ROOT HAIR DEFECTIVE-SIX LIKE 6			7	LOC_Os07g39940. RSL4 (ROOT HAIR DEFECTVE SIX-LIKE 4) ortholog. RSL (Root Hair Defective-Six Like) Class II Transcription Factor. TO:0001051: root hair density.	 Vegetative organ - Root	Os07g0588400	LOC_Os07g39940.1	GR:0020266			GO:0005634 - nucleus, GO:0048767 - root hair elongation, GO:0010015 - root morphogenesis	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
15407	_	OsbHLH129, bHLH129, OsRSL4, RSL4	_	basic helix-loop-helix protein 129, ROOT HAIR DEFECTIVE-SIX LIKE 4			3	 RSL (Root Hair Defective-Six Like) Class II Transcription Factor. 		Os03g0205300	LOC_Os03g10770.1				GO:0003677 - DNA binding		
15408	_	OsbHLH130, bHLH130, OsRSL9, RSL9	_	basic helix-loop-helix protein 130, ROOT HAIR DEFECTIVE-SIX LIKE 9			12	RSL4 (ROOT HAIR DEFECTVE SIX-LIKE4) ortholog. LOC_Os12g39850. RSL (Root Hair Defective-Six Like) Class II Transcription Factor. 	 Vegetative organ - Root	Os12g0589000	LOC_Os12g39850.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0048767 - root hair elongation, GO:0010015 - root morphogenesis	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
15409	_	OsbHLH131, bHLH131, OsRSL5, RSL5	_	basic helix-loop-helix protein 131, ROOT HAIR DEFECTIVE-SIX LIKE 5			3	 RSL (Root Hair Defective-Six Like) Class II Transcription Factor. 	 Vegetative organ - Root		LOC_Os03g42100.1				GO:0010015 - root morphogenesis, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0002665 - root hair length	
15410	_	OsbHLH132, bHLH132, OsRSL7, RSL7	_	basic helix-loop-helix protein 132, ROOT HAIR DEFECTIVE-SIX LIKE 7			11	 RSL (Root Hair Defective-Six Like) Class II Transcription Factor. 	 Vegetative organ - Root	Os11g0634700	LOC_Os11g41640.1				GO:0048767 - root hair elongation, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0002665 - root hair length	
15411	_	OsbHLH134, bHLH134	_	basic helix-loop-helix protein 134			3	RSL (Root Hair Defective-Six Like) Class II Transcription Factor. 		Os03g0764200	LOC_Os03g55550.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
15412	_	OsbHLH135	_	basic helix-loop-helix protein 135			12			Os12g0597800	LOC_Os12g40590.1						
15413	_	OsbHLH136	_	basic helix-loop-helix protein 136			12			Os12g0599000	LOC_Os12g40710.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15414	_	OsbHLH137	_	basic helix-loop-helix protein 137			12			Os12g0598200	LOC_Os12g40630.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15415	_	OsbHLH138, bHLH138, OsPIF4, PIF4	_	basic helix-loop-helix protein 138, Phytochrome-interacting factor 4			3		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os03g0391700	LOC_Os03g27390.2, LOC_Os03g27390.1				GO:0009266 - response to temperature stimulus, GO:0005634 - nucleus	TO:0000067 - genic male sterility-thermo sensitive, TO:0000432 - temperature response trait	
15416	_	OsbHLH139	_	basic helix-loop-helix protein 139			2			Os02g0315600	LOC_Os02g21090.3, LOC_Os02g21090.2, LOC_Os02g21090.1				GO:0005634 - nucleus		
15417	_	OsbHLH140	_	basic helix-loop-helix protein 140			3			Os03g0591300	LOC_Os03g39432.2, LOC_Os03g39432.1						
15418	_	OsbHLH142, bHLH142, TIP2, OsTIP2	_	basic helix-loop-helix protein 142, TDR INTERACTING PROTEIN2, TDR Interacting Protein 2		ms142, tip2	1		 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0293100	LOC_Os01g18870.1				GO:0005634 - nucleus, GO:0009555 - pollen development, GO:0048653 - anther development, GO:0048654 - anther morphogenesis, GO:0080110 - sporopollenin biosynthetic process, GO:0043067 - regulation of programmed cell death	TO:0000214 - anther shape, TO:0000106 - male sterility type, TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
15419	_	OsbHLH143	_	basic helix-loop-helix protein 143			9			Os09g0487900	LOC_Os09g31300.2, LOC_Os09g31300.1						
15420	_	OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1	_	basic helix-loop-helix protein 144, endosperm-specific gene 65, ZHOUPI 1			4	LOC_Os04g35010. rice ortholog of AtZOU (AtZHOUPI). PO:0030104: caryopsis fruit.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Morphological traits - Endosperm	Os04g0429400	LOC_Os04g35010.1				GO:0009790 - embryonic development, GO:0009960 - endosperm development, GO:0042335 - cuticle development, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000207 - plant height, TO:0002681 - leaf curling, TO:0000370 - leaf width, TO:0020034 - glume width, TO:0002627 - fruit width, TO:0000420 - fertility related trait	PO:0009010 - seed , PO:0007633 - endosperm development stage , PO:0001170 - seed development stage , PO:0009089 - endosperm 
15421	_	OsbHLH145	_	basic helix-loop-helix protein 145			4			Os04g0429300	LOC_Os04g35000.1						
15422	_	OsbHLH146, bHLH146, OsZOU-2, OsZOU2, ZOU-2, ZOU2	_	basic helix-loop-helix protein 146, ZHOUPI 2			2	LOC_Os02g34320. rice homolog of AtZOU (AtZHOUPI).		Os02g0547600	LOC_Os02g34320.1						PO:0025034 - leaf , PO:0009047 - stem 
15423	_	OsbHLH147, bHLH147	_	basic helix-loop-helix protein 147			2			Os02g0548100	LOC_Os02g34370.1				GO:0005634 - nucleus		PO:0009010 - seed 
15424	_	OsbHLH149	_	basic helix-loop-helix protein 149			1			Os01g0865600	LOC_Os01g64560.2, LOC_Os01g64560.1				GO:0005634 - nucleus		
15425	_	OsbHLH150	_	basic helix-loop-helix protein 150			12			Os12g0160400	LOC_Os12g06335.1, LOC_Os12g06330.2, LOC_Os12g06330.1						
15426	_	OsbHLH151	_	basic helix-loop-helix protein 151			11			Os11g0158500	LOC_Os11g06010.1						
15427	_	OsbHLH156	_	basic helix-loop-helix protein 156			4			Os04g0381700	LOC_Os04g31290.1						
15428	_	OsbHLH157, bHLH157	_	basic helix-loop-helix protein 157			2	PO:0030123: panicle inflorescence.		Os02g0178700	LOC_Os02g08220.1				GO:0005634 - nucleus		
15429	_	OsbHLH158. bHLH158	_	basic helix-loop-helix protein 158			6		 Tolerance and resistance - Stress tolerance	Os06g0653200	LOC_Os06g44320.1				GO:0005634 - nucleus, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
15430	_	OsbHLH159	_	basic helix-loop-helix protein 159			5			Os05g0157400	LOC_Os05g06520.1						
15431	_	OsbHLH160, bHLH160, SIP19, OsSIP19	_	basic helix-loop-helix protein 160, SKIP interacting protein 19, SKIPa-interacting protein 19, SKIPa-interacting protein 19			11	EU368709. LOC_Os11g02054. Ubiquitin-ligase complex protein. 	 Biochemical character	Os11g0111800	LOC_Os11g02054.1						PO:0009005 - root 
15432	_	OsbHLH161	_	basic helix-loop-helix protein 161			12			Os12g0111400	LOC_Os12g02020.1				GO:0005634 - nucleus		
15433	_	OsbHLH162, bHLH162	_	basic helix-loop-helix protein 162			5			Os05g0337200	LOC_Os05g27090.1				GO:0005634 - nucleus, GO:0008152 - metabolic process, GO:0016597 - amino acid binding		PO:0009005 - root 
15434	_	OsbHLH163, bHLH163, OsHLH61, HLH61	_	basic helix-loop-helix protein 163, helix-loop-helix protein 61			7		 Tolerance and resistance - Insect resistance	Os07g0676600	LOC_Os07g47960.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance, TO:0000172 - jasmonic acid sensitivity	
15436	_	OsbHLH166, bHLH166	_	basic helix-loop-helix protein 166			3			Os03g0338400	LOC_Os03g21970.1				GO:0005634 - nucleus		PO:0009005 - root 
15437	_	OsbHLH167	_	basic helix-loop-helix protein 167			9			Os09g0519100	LOC_Os09g34330.1				GO:0005634 - nucleus		
15438	_	OsDSR1	_	DUF966-stress repressive gene 1			1		 Tolerance and resistance - Stress tolerance	Os01g0778100	LOC_Os01g57020.1						
15439	_	OsDSR2	_	DUF966-stress repressive gene 2			1		 Tolerance and resistance - Stress tolerance	Os01g0839200	LOC_Os01g62200.2, LOC_Os01g62200.1					TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
15440	_	OsDSR3	_	DUF966-stress repressive gene 3			1		 Tolerance and resistance - Stress tolerance	Os01g0975000	LOC_Os01g74370.1						
15441	_	OsDSR4	_	DUF966-stress repressive gene 4			3		 Tolerance and resistance - Stress tolerance	Os03g0192300	LOC_Os03g09200.1						
15442	_	OsDSR5	_	DUF966-stress repressive gene 5			3		 Tolerance and resistance - Stress tolerance	Os03g0692400	LOC_Os03g48600.9, LOC_Os03g48600.8, LOC_Os03g48600.7, LOC_Os03g48600.6, LOC_Os03g48600.5, LOC_Os03g48600.3, LOC_Os03g48600.2, LOC_Os03g48600.12, LOC_Os03g48600.11, LOC_Os03g48600.1				GO:0005886 - plasma membrane		
15443	_	OsDSR6	_	DUF966-stress repressive gene 6			8		 Tolerance and resistance - Stress tolerance	Os08g0561600	LOC_Os08g44760.3, LOC_Os08g44760.2, LOC_Os08g44760.1						
15444	_	OsDSR7	_	DUF966-stress repressive gene 7			9		 Tolerance and resistance - Stress tolerance	Os09g0571000	LOC_Os09g39750.1						
15445	_	OsGAPDHA, OsGAPDH4	_	chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic GAPDH A subunit					 Biochemical character								
15446	_	OsGAPDH1	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic GAPDH 1					 Biochemical character								
15447	_	OsGAPDH2	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic GAPDH 2					 Biochemical character								
15448	_	OsGAPDH5	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 5, cytosolic GAPDH 5					 Biochemical character								
15449	_	OsGAPDH6	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 6, cytosolic GAPDH 6					 Biochemical character								
15450	_	OsGAPDH7	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 7, cytosolic GAPDH 7					 Biochemical character								
15451	_	OsGAPDH8, NP-GAPDH	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 8, cytosolic GAPDH 8, non-phosphorylated GAPDH					 Biochemical character								
15452	_	OsGZF1	_	GluB-1-binding Zinc Finger 1			7	KF289071.	 Seed - Physiological traits - Storage substances	Os07g0668600	LOC_Os07g47240.1				GO:0046872 - metal ion binding	TO:0000490 - protein composition related trait	
15453	ECA2	OsECA2, OsER3ATP3	ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE2	endoplasmic reticulum-type Ca2+ P-Type ATPase 2	ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE2		3	GO:0071421: manganese ion transmembrane transport.	 Biochemical character	Os03g0730800	LOC_Os03g52090.1				GO:0070588 - calcium ion transmembrane transport, GO:0005524 - ATP binding, GO:0005794 - Golgi apparatus, GO:0005388 - calcium-transporting ATPase activity, GO:0005802 - trans-Golgi network, GO:0006200 - ATP catabolic process, GO:0015410 - manganese-transporting ATPase activity, GO:0048364 - root development, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0055071 - manganese ion homeostasis		
15454	_	CAX2, OsCAX2, OsCAX4, CAX4, OsSTA47, OsNCX3, NCX3	_	Vacuolar cation/proton exchanger 2, Ca(2+)/H(+) exchanger 2, cation/H+ exchanger 2, vacuolar cation/H+ exchanger 4, Na+/Ca2+ Exchanger 3, Sodium/calcium exchanger 3			2	Q6YXZ1. AB859021. GO:1902600: hydrogen ion transmembrane transport. OsCAX4 in Yamada et al. 2014, Singh et al. 2015 (pmid: 25869323), Pittman and Hirschi 2016. LOC_Os02g04630. a mature anther-preferentially expressed gene. Oryza barthii: ObarCAX4: OBART02G03190, Oryza brachyantha: ObraCAX4: OB02G12870, Oryza glaberrima: OglaCAX4: ORGLA02G0030100, Oryza glumipatula: OgluCAX4: OGLUM02G03090, Oryza longistaminata: OlCAX4: OlongScf20449, Oryza meridionalis: OmCAX4: OMERI02G03850, Oryza nivara: OnCAX4: ONIVA02G03000, Oryza punctata: OpCAX4: OPUNC02G02520, Oryza rufipogon: OrCAX4: ORUFI02G03120. GO:0035864: response to potassium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0138900	LOC_Os02g04630.1				GO:0015369 - calcium:hydrogen antiporter activity, GO:0006828 - manganese ion transport, GO:0015691 - cadmium ion transport, GO:0009411 - response to UV, GO:0006979 - response to oxidative stress, GO:0051592 - response to calcium ion, GO:0009651 - response to salt stress, GO:0009705 - plant-type vacuole membrane, GO:0046686 - response to cadmium ion, GO:0070588 - calcium ion transmembrane transport, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity	PO:0009066 - anther 
15455	CAX7	OsCAX7, OsNCX12, NCX12, OsNaCa11exA	Ca(2+)/H(+) EXCHANGER 7	Vacuolar cation/proton exchanger 7, Ca(2+)/H(+) exchanger 7, cation/H+ exchanger 7, Na+/Ca2+ Exchanger 12, Sodium/calcium exchanger 12	Ca(2+)/H(+) EXCHANGER 7		11	LOC_Os11g01580. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0107266	LOC_Os11g01580.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
15456	CAX8	OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5	Ca(2+)/H(+) EXCHANGER 8	Vacuolar cation/proton exchanger 8, Ca(2+)/H(+) exchanger 8, cation/H+ exchanger 8, Na+/Ca2+ Exchanger 13, Sodium/calcium exchanger 13	Ca(2+)/H(+) EXCHANGER 8		11	LOC_Os11g05070. Oryza barthii: ObarCCX5: OBART11G03080 (probably partial length sequence), Oryza brachyantha: ObraCCX5: OB11G12360 (only partial length sequence available), Oryza glaberrima: OglaCCX5: ORGLA11G0028100, Oryza glumipatula: OgluCCX5: OGLUM11G02700 (only partial length sequence available), Oryza longistaminata: OlCCX5: OLONG_000677 (only partial length sequence available), Oryza meridionalis: OmCCX5: OMERI11G02830, Oryza nivara: OnCCX5: ONIVA11G03470, Oryza punctata: OpCCX5: OPUNC11G02690 (only partial length sequence available), Oryza rufipogon: OrCCX5: ORUFI11G02920.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0148000	LOC_Os11g05070.1				GO:0015081 - sodium ion transmembrane transporter activity, GO:0034399 - nuclear periphery, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0010163 - high-affinity potassium ion import, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance	
15457	CCX1	OsCCX1, OsNCX6, NCX6	CATION/CA2+ EXCHANGER 1	cation/Ca2+ exchanger 1, Na+/Ca2+ Exchanger 6, Sodium/calcium exchanger 6			3	LOC_Os03g08230. Oryza barthii: ObarCCX1: OBART03G05850, Oryza brachyantha: ObraCCX1: OB03G15940, Oryza glaberrima: OglaCCX1: ORGLA03G0056400, Oryza glumipatula: OgluCCX1: OGLUM03G05850, Oryza longistaminata: OlCCX1: OLONG_002428, Oryza meridionalis: OmCCX1: OMERI03G05690, Oryza nivara: OnCCX1: ONIVA03G05830, Oryza punctata: OpCCX1: OPUNC03G05640, Oryza rufipogon: OrCCX1: ORUFI03G05670.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0180000	LOC_Os03g08230.1				GO:0015079 - potassium ion transmembrane transporter activity, GO:0005384 - manganese ion transmembrane transporter activity, GO:0030003 - cellular cation homeostasis, GO:0030659 - cytoplasmic vesicle membrane, GO:0015081 - sodium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system, GO:0043157 - response to cation stress, GO:0051592 - response to calcium ion, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
15458	CCX3	OsCCX3, OsNCX11, NCX11	CATION/CA2+ EXCHANGER 3	cation/Ca2+ exchanger 3, Na+/Ca2+ Exchanger 11, Sodium/calcium exchanger 11			10	LOC_Os10g30070. Oryza barthii: ObarCCX3: ABRL00000000 (only partial length sequence available), Oryza brachyantha: ObraCCX3: OB10G18460 (only partial length sequence available), Oryza glaberrima: OglaCCX3: agi1.1 (only partial length sequence available), Oryza glumipatula: OgluCCX3: OGLUM10G10820 (probably partial length sequence), Oryza longistaminata: OlCCX3: OLONG_007999 (only partial length sequence available), Oryza meridionalis: OmCCX3: OMERI04G07010, Oryza nivara: OnCCX3: ONIVA10G10070, Oryza punctata: OpCCX3: OPUNC10G09490, Oryza rufipogon: OrCCX3: ORUFI10G11590 (probably partial length sequence).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0436900	LOC_Os10g30070.1				GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0051592 - response to calcium ion, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity, TO:0006001 - salt tolerance	
15459	CCX4	OsCCX4, OsNCX15, NCX15	CATION/CA2+ EXCHANGER 4	cation/Ca2+ exchanger 4, Na+/Ca2+ Exchanger 15, Sodium/calcium exchanger 15			12	LOC_Os12g42910. Oryza barthii: ObarCCX4: ABRL00000000 (only partial length sequence available), Oryza brachyantha: ObraCCX4: OB12G26160 (probably partial length sequence), Oryza glaberrima: OglaCCX4: ORGLA12G0166400, Oryza glumipatula: OgluCCX4: OGLUM12G21030, Oryza longistaminata: OlCCX4: OLONG_004463 (only partial length sequence available), Oryza meridionalis: OmCCX4: OMERI12G14430, Oryza nivara: OnCCX4: ONIVA12G18230, Oryza punctata: OpCCX4: OPUNC12G17520, Oryza rufipogon: OrCCX4: ORUFI12G21590.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0624200	LOC_Os12g42910.1				GO:0055085 - transmembrane transport, GO:0051592 - response to calcium ion, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009411 - response to UV, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000160 - UV light sensitivity	
15460	_	OsEFCAX1, OsNCX1, OsNCX1.1, OsNCX1.2, NCX1, OsNCL1, NCL1	_	EF-hand containing H+/cation exchanger 1, EF-hand containing CAX 1, Na+/Ca2+ Exchanger 1, Sodium/Calcium exchanger 1, Na+/Ca2+ exchanger-like protein 1			1	GO:0035725: sodium ion transmembrane transport. LOC_Os01g11414. Oryza barthii: ObarNCL1: OBART01G07170, Oryza brachyantha: ObraNCL1: OB01G17150, Oryza glumipatula: OgluNCL1: OGLUM01G08060, Oryza longistaminata: OlNCL1: OLONG_003090, Oryza meridionalis: OmNCL1: OMERI01G07070, Oryza nivara: OnNCL1: ONIVA01G09210, Oryza punctata: OpNCL1: OPUNC01G06870, Oryza rufipogon: OrNCL1: ORUFI01G07720.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0212400	LOC_Os01g11414.2, LOC_Os01g11414.1				GO:0009409 - response to cold, GO:0005774 - vacuolar membrane, GO:0055074 - calcium ion homeostasis, GO:0051592 - response to calcium ion, GO:0005509 - calcium ion binding, GO:0005432 - calcium:sodium antiporter activity, GO:0000325 - plant-type vacuole, GO:0016021 - integral to membrane, GO:0071472 - cellular response to salt stress, GO:0070588 - calcium ion transmembrane transport, GO:0009506 - plasmodesma, GO:0009411 - response to UV	TO:0000303 - cold tolerance, TO:0000160 - UV light sensitivity	PO:0025034 - leaf , PO:0009005 - root , PO:0009049 - inflorescence 
15461	_	OsEFCAX2, OsNCX4, OsNCX4.1, OsNCX4.2, NCX4, OsNCL2, NCL2	_	EF-hand containing H+/cation exchanger 2, EF-hand containing CAX 2, Na+/Ca2+ Exchanger 4, Sodium/calcium exchanger 4, Na+/Ca2+ exchanger-like protein 2			2	GO:0035725: sodium ion transmembrane transport. LOC_Os02g14980. Oryza barthii: ObarNCL2: OBART02G10580, Oryza brachyantha: ObraNCL2: OB02G19370, Oryza glaberrima: OglaNCL2: ORGLA02G0095100, Oryza glumipatula: OgluNCL2: OGLUM02G10510, Oryza longistaminata: OlNCL2: OLONG_018730, Oryza meridionalis: OmNCL2: OMERI02G11440, Oryza nivara: OnNCL2: ONIVA02G11690, Oryza punctata: OpNCL2: OPUNC02G09420, Oryza rufipogon: OrNCL2: ORUFI02G10510.	 Biochemical character	Os02g0247800	LOC_Os02g14980.2, LOC_Os02g14980.1						
15462	_	OsMHX1, MHX1, OsMHX2, MHX2	_	Mg2+/H+ exchanger 1, magnesium/hydrogen exchanger 1			2	Q6H641. LOC_Os02g43110. OsMHX2 in Pittman and Hirschi 2016. Oryza barthii: ObarMHX2: OBART02G25830, Oryza glaberrima: OglaMHX2: ORGLA02G0221000 (probably partial length sequence), Oryza nivara: OnMHX2: ONIVA02G28280 (probably partial length sequence), Oryza rufipogon: OrMHX2: ORUFI02G27220 (probably partial length sequence).	 Biochemical character	Os02g0644900	LOC_Os02g43110.1				GO:0015693 - magnesium ion transport, GO:0016021 - integral to membrane, GO:0006829 - zinc ion transport, GO:0055085 - transmembrane transport, GO:0006826 - iron ion transport, GO:0005774 - vacuolar membrane		
15463	_	NCKX1	_	Na/Ca-K exchanger 1			3	LOC_Os03g01330	 Biochemical character		LOC_Os03g01330						
15464	ANN1	OsANN1	ANNEXIN 1	Annexin 1	ANNEXIN 1		1		 Biochemical character	Os01g0497400	LOC_Os01g31270.1				GO:0005544 - calcium-dependent phospholipid binding, GO:0005509 - calcium ion binding		
15465	ANN2	OsANN2, OsANN1, ANN1	ANNEXIN 2	Annexin 2, annexin 1	ANNEXIN 2		2	LOC_Os02g51750. GO:0071435: potassium ion export. OsANN1 in Qiao et al. 2015. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0753800	LOC_Os02g51750.2, LOC_Os02g51750.1				GO:0055114 - oxidation reduction, GO:0005829 - cytosol, GO:0005739 - mitochondrion, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0009579 - thylakoid, GO:0005774 - vacuolar membrane, GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0004601 - peroxidase activity, GO:0008270 - zinc ion binding, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0016887 - ATPase activity, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009570 - chloroplast stroma, GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding, GO:0070588 - calcium ion transmembrane transport, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
15466	ANN3	OsANN3	ANNEXIN 3	Annexin 3	ANNEXIN 3		5		 Biochemical character	Os05g0382600	LOC_Os05g31750.1				GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding		
15467	ANN4	OsANN4	ANNEXIN 4	Annexin 4	ANNEXIN 4		5	LOC_Os05g31760. GO:0035864: response to potassium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0382900	LOC_Os05g31760.1				GO:0005773 - vacuole, GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding, GO:0051592 - response to calcium ion, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009408 - response to heat		
15468	ANN5	OsANN5	ANNEXIN 5	Annexin 5	ANNEXIN 5		6		 Biochemical character	Os06g0221200	LOC_Os06g11800.1				GO:0005773 - vacuole, GO:0009651 - response to salt stress, GO:0009639 - response to red or far red light, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding, GO:0009408 - response to heat		
15469	ANN6	OsANN6	ANNEXIN 6	Annexin 6	ANNEXIN 6		7		 Biochemical character	Os07g0659600	LOC_Os07g46550.1				GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding		
15470	ANN7	OsANN7	ANNEXIN 7	Annexin 7	ANNEXIN 7		8		 Biochemical character	Os08g0425700	LOC_Os08g32970.1				GO:0009414 - response to water deprivation, GO:0009639 - response to red or far red light, GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding, GO:0009408 - response to heat, GO:0009409 - response to cold		
15471	ANN8	OsANN8	ANNEXIN 8	Annexin 8	ANNEXIN 8		9		 Biochemical character	Os09g0368850	LOC_Os09g20330.1				GO:0005544 - calcium-dependent phospholipid binding, GO:0005509 - calcium ion binding		
15472	ANN9	OsANN9	ANNEXIN 9	Annexin 9	ANNEXIN 9		9		 Biochemical character	Os09g0394900	LOC_Os09g23160.2, LOC_Os09g23160.1				GO:0005544 - calcium-dependent phospholipid binding, GO:0005509 - calcium ion binding		
15473	ANN10	OsANN10	ANNEXIN 10	Annexin 10	ANNEXIN 10		9		 Biochemical character	Os09g0453300	LOC_Os09g27990.1				GO:0005544 - calcium-dependent phospholipid binding, GO:0005509 - calcium ion binding		
15474	CNGC1	OsCNGC1, OsCNGC15, CNGC15	CYCLIC NUCLEOTIDE GATED CHANNEL 1	Cyclic nucleotide gated channel 1, Cyclic nucleotide-gated ion channel 15			1	LOC_Os01g57370. Os01g0782700 (in Rap1 (build3), Rap2 (build4)). OsCNGC15 (Os01g0782700) in Nawaz et al. 2014.	 Biochemical character	Os01g0782800	LOC_Os01g57370.1				GO:0034220 - ion transmembrane transport, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0006812 - cation transport, GO:0005216 - ion channel activity, GO:0042742 - defense response to bacterium, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0005886 - plasma membrane	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000315 - bacterial disease resistance, TO:0000615 - abscisic acid sensitivity	
15475	CNGC2	OsCNGC2, OsCNGC1	CYCLIC NUCLEOTIDE GATED CHANNEL 2	Cyclic nucleotide gated channel 2, Cyclic nucleotide-gated ion channel 1			2	GO:0071805: potassium ion transmembrane transport. OsCNGC1 in Nawaz et al. 2014 and Kakar et al. 2015. LOC_Os02g15580.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0255000	LOC_Os02g15580.3, LOC_Os02g15580.2, LOC_Os02g15580.1				GO:0009735 - response to cytokinin stimulus, GO:0005249 - voltage-gated potassium channel activity, GO:0009620 - response to fungus, GO:0034765 - regulation of ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0009751 - response to salicylic acid stimulus	TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000173 - ethylene sensitivity	
15476	CNGC3	OsCNGC3, OsCNGC7	CYCLIC NUCLEOTIDE GATED CHANNEL 3	Cyclic nucleotide gated channel 3, Cyclic nucleotide-gated ion channel 7			2	LOC_Os02g41710. OsCNGC7 in Nawaz et al. 2014. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0627700	LOC_Os02g41710.1				GO:0016021 - integral to membrane, GO:0005216 - ion channel activity, GO:0034220 - ion transmembrane transport, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009733 - response to auxin stimulus, GO:0009535 - chloroplast thylakoid membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus	TO:0000303 - cold tolerance, TO:0000173 - ethylene sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000315 - bacterial disease resistance	
15477	CNGC4	OsCNGC4, OsCNGC12	CYCLIC NUCLEOTIDE GATED CHANNEL 4	Cyclic nucleotide gated channel 4, Cyclic nucleotide-gated ion channel 12			2	LOC_Os02g53340. OsCNGC12 in Nawaz et al. 2014. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0773400	LOC_Os02g53340.2, LOC_Os02g53340.1				GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000315 - bacterial disease resistance, TO:0000175 - bacterial blight disease resistance	
15478	CNGC5	OsCNGC5, OsCNGC10	CYCLIC NUCLEOTIDE GATED CHANNEL 5	Cyclic nucleotide gated channel 5, Cyclic nucleotide-gated ion channel 10			2	LOC_Os02g54760. OsCNGC10 in Nawaz et al. 2014 and Kakar et al. 2015. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0789100	LOC_Os02g54760.1				GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009609 - response to symbiotic bacterium, GO:0009628 - response to abiotic stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000168 - abiotic stress trait, TO:0000315 - bacterial disease resistance	
15479	CNGC6	OsCNGC6, OsCNGC4, OsSTA107	CYCLIC NUCLEOTIDE GATED CHANNEL 6	Cyclic nucleotide gated channel 6, Cyclic nucleotide-gated ion channel 4			3	GO:0071805: potassium ion transmembrane transport. LOC_Os03g44440. OsCNGC4 in Nawaz et al. 2014. a mature anther-preferentially expressed gene.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0646300	LOC_Os03g44440.1				GO:0005249 - voltage-gated potassium channel activity, GO:0009723 - response to ethylene stimulus, GO:0005886 - plasma membrane, GO:0009735 - response to cytokinin stimulus, GO:0042742 - defense response to bacterium, GO:0009733 - response to auxin stimulus, GO:0046686 - response to cadmium ion, GO:0034765 - regulation of ion transmembrane transport, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity, TO:0000315 - bacterial disease resistance, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009066 - anther 
15480	CNGC7	OsCNGC7, OsCNGC14	CYCLIC NUCLEOTIDE GATED CHANNEL 7	Cyclic nucleotide gated channel 7, Cyclic nucleotide-gated ion channel 14			3	GO:0071805: potassium ion transmembrane transport. LOC_Os03g55100. OsCNGC14 in Nawaz et al. 2014. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0758300	LOC_Os03g55100.1				GO:0009626 - plant-type hypersensitive response, GO:0034765 - regulation of ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005222 - intracellular cAMP activated cation channel activity, GO:0005242 - inward rectifier potassium channel activity, GO:0005262 - calcium channel activity, GO:0007263 - nitric oxide mediated signal transduction, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000315 - bacterial disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
15481	CNGC8	OsCNGC8, OsCNGC6, OsCNGC9	CYCLIC NUCLEOTIDE GATED CHANNEL 8	Cyclic nucleotide gated channel 8, Cyclic nucleotide-gated ion channel 6			4	LOC_Os04g55080. OsCNGC6 in Nawaz et al. 2014 and Kakar et al. 2015. OsCNGC9 in Chen et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0643600	LOC_Os04g55080.1				GO:0009609 - response to symbiotic bacterium, GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009628 - response to abiotic stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000168 - abiotic stress trait, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance	
15482	CNGC9	OsCNGC9, OsCNGC16	CYCLIC NUCLEOTIDE GATED CHANNEL 9	Cyclic nucleotide gated channel 9, Cyclic nucleotide-gated ion channel 16			5	LOC_Os05g42250. OsCNGC16 in Nawaz et al. 2014. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0502000	LOC_Os05g42250.1				GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0034220 - ion transmembrane transport, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0005216 - ion channel activity, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000315 - bacterial disease resistance, TO:0000175 - bacterial blight disease resistance	
15483	CNGC10	OsCNGC10, OsCNGC11	CYCLIC NUCLEOTIDE GATED CHANNEL 10	Cyclic nucleotide gated channel 10, Cyclic nucleotide-gated ion channel 11			6	LOC_Os06g08850. OsCNGC11 in Nawaz et al. 2014. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0188000	LOC_Os06g08850.2, LOC_Os06g08850.1				GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0005743 - mitochondrial inner membrane	TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance	
15484	CNGC11	OsCNGC11, OsCNGC13, CNGC13, SSS1-D	CYCLIC NUCLEOTIDE GATED CHANNEL 11	Cyclic nucleotide gated channel 11, Cyclic nucleotide-gated ion channel 13, semi-seed-setting rate1-Dominant		sss1-D, OsCNGC13-D	6	LOC_Os06g10580. OsCNGC13 in Nawaz et al. 2014 and Xu et al. 2017. TO:0006047: calcium content trait.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0207700	LOC_Os06g10580.2, LOC_Os06g10580.1				GO:0070588 - calcium ion transmembrane transport, GO:0042391 - regulation of membrane potential, GO:0005887 - integral to plasma membrane, GO:0005249 - voltage-gated potassium channel activity, GO:0005216 - ion channel activity, GO:0042742 - defense response to bacterium, GO:0009735 - response to cytokinin stimulus, GO:0009624 - response to nematode, GO:0009723 - response to ethylene stimulus, GO:0005886 - plasma membrane, GO:0030198 - extracellular matrix organization, GO:0043067 - regulation of programmed cell death, GO:0080092 - regulation of pollen tube growth	TO:0000315 - bacterial disease resistance, TO:0000180 - spikelet fertility, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
15485	CNGC12	OsCNGC12, OsCNGC2	CYCLIC NUCLEOTIDE GATED CHANNEL 12	Cyclic nucleotide gated channel 12, Cyclic nucleotide-gated ion channel 2			6	GO:0071805: potassium ion transmembrane transport. OsCNGC2 in Nawaz et al. 2014. OsCaM1 target gene.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0527100	LOC_Os06g33570.1				GO:0034765 - regulation of ion transmembrane transport, GO:0005249 - voltage-gated potassium channel activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009735 - response to cytokinin stimulus	TO:0000315 - bacterial disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity	
15486	CNGC13	OsCNGC13	CYCLIC NUCLEOTIDE GATED CHANNEL 13	Cyclic nucleotide gated channel 13			6		 Biochemical character	Os06g0527300	LOC_Os06g33600.1				GO:0034220 - ion transmembrane transport, GO:0006816 - calcium ion transport, GO:0006813 - potassium ion transport, GO:0005221 - intracellular cyclic nucleotide activated cation channel activity		
15487	CNGC14	OsCNGC14, OsCNGC3	CYCLIC NUCLEOTIDE GATED CHANNEL 14	Cyclic nucleotide gated channel 14, Cyclic nucleotide-gated ion channel 3			6	LOC_Os06g33610. OsCNGC3 in Nawaz et al. 2014. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os06g33610				GO:0006816 - calcium ion transport, GO:0009620 - response to fungus, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0034220 - ion transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005221 - intracellular cyclic nucleotide activated cation channel activity, GO:0006813 - potassium ion transport, GO:0009409 - response to cold	TO:0000315 - bacterial disease resistance, TO:0000173 - ethylene sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
15488	CNGC15	OsCNGC15, OsCNGC9	CYCLIC NUCLEOTIDE GATED CHANNEL 15	Cyclic nucleotide gated channel 15, Cyclic nucleotide-gated ion channel 9			9	LOC_Os09g38580. OsCNGC9 in Nawaz et al. 2014. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0558300	LOC_Os09g38580.5, LOC_Os09g38580.4, LOC_Os09g38580.3, LOC_Os09g38580.1				GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005216 - ion channel activity, GO:0034220 - ion transmembrane transport, GO:0009733 - response to auxin stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000315 - bacterial disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity	
15489	CNGC16	OsCNGC16, OsCNGC8, OsSTA273	CYCLIC NUCLEOTIDE GATED CHANNEL 16	Cyclic nucleotide gated channel 16, Cyclic nucleotide-gated ion channel 8			12	LOC_Os12g06570. GO:0071805: potassium ion transmembrane transport. OsCNGC8 in Nawaz et al. 2014. a mature anther-preferentially expressed gene.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0163000/Os12g0163100					GO:0042742 - defense response to bacterium, GO:0034765 - regulation of ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005249 - voltage-gated potassium channel activity, GO:0005886 - plasma membrane, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000315 - bacterial disease resistance, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity	PO:0009066 - anther 
15490	CNGC17	OsCNGC17, OsCNGC5, OsSTA282	CYCLIC NUCLEOTIDE GATED CHANNEL 17	Cyclic nucleotide gated channel 17, Cyclic nucleotide-gated ion channel 5			12	LOC_Os12g28260. OsCNGC5 in Nawaz et al. 2014. a mature anther-preferentially expressed gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0468500	LOC_Os12g28260.1				GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009066 - anther 
15491	_	OsGLR1.1, GLR1.1, OsGLR1.2, GLR1.2	_	Glutamate receptor homolog 1.1, GLUTAMATE RECEPTOR-LIKE 1.2			9	LOC_Os09g26160. OsGLR1.2 in Ni et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0431200	LOC_Os09g26160.2, LOC_Os09g26160.1				GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0005886 - plasma membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0034220 - ion transmembrane transport, GO:0016021 - integral to membrane, GO:0004970 - ionotropic glutamate receptor activity	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009005 - root 
15492	_	OsGLR1.2, GLR1.2, OsGLR1.4, GLR1.4	_	Glutamate receptor homolog 1.2, GLUTAMATE RECEPTOR-LIKE 1.4			2	LOC_Os02g54640. OsGLR1.4 in Ni et al. 2016.	 Biochemical character	Os02g0787600	LOC_Os02g54640.1				GO:0004970 - ionotropic glutamate receptor activity, GO:0005886 - plasma membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0034220 - ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005234 - extracellular-glutamate-gated ion channel activity		PO:0009005 - root 
15493	_	OsGLR1.3, GLR1.3, OsGLR1.1, GLR1.1	_	Glutamate receptor homolog 1.3, GLUTAMATE RECEPTOR-LIKE 1.1			9	LOC_Os09g26144. OsGLR1.1 in Ni et al. 2016, Bang et al. 2018. 	 Biochemical character	Os09g0431100	LOC_Os09g26144.1				GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0005886 - plasma membrane, GO:0034220 - ion transmembrane transport, GO:0016021 - integral to membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway		
15494	_	OsGLR2.1, GLR2.1, OsGLR2.2, GLR2.2	_	Glutamate receptor homolog 2.1, GLUTAMATE RECEPTOR-LIKE 2.2			9	LOC_Os09g25960. OsGLR2.2 in Ni et al. 2016.	 Biochemical character	Os09g0429000	LOC_Os09g25960.1				GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0034220 - ion transmembrane transport, GO:0005886 - plasma membrane		
15495	_	OsGLR2.2, GLR2.2, OsGLR2.1, GLR2.1	_	Glutamate receptor homolog 2.2, GLUTAMATE RECEPTOR-LIKE 2.1			9	LOC_Os09g25980. OsGLR2.1 in Ni et al. 2016.	 Biochemical character	Os09g0429200	LOC_Os09g25980.1				GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0070509 - calcium ion import, GO:0010107 - potassium ion import		PO:0009005 - root 
15496	_	OsGLR2.3, GLR2.3	_	Glutamate receptor homolog 2.3, GLUTAMATE RECEPTOR-LIKE 2.3			9	LOC_Os09g25990.	 Biochemical character	Os09g0429400	LOC_Os09g25990.1				GO:0034220 - ion transmembrane transport, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0005886 - plasma membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0016021 - integral to membrane, GO:0004970 - ionotropic glutamate receptor activity		PO:0008039 - stem base , PO:0009005 - root 
15497	_	OsGLR2.4, GLR2.4	_	Glutamate receptor homolog 2.4, GLUTAMATE RECEPTOR-LIKE 2.4			9	LOC_Os09g26000.	 Biochemical character	Os09g0429500	LOC_Os09g26000.1				GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0034220 - ion transmembrane transport, GO:0004970 - ionotropic glutamate receptor activity		
15498	_	OsGLR3.1, GLR3.1, OsGLR3.2, GLR3.2	_	Glutamate receptor homolog 3.1, GLUTAMATE RECEPTOR-LIKE 3.2			2	GO:0071230: cellular response to amino acid stimulus. LOC_Os02g02540. OsGLR3.2 in Ni et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0117500	LOC_Os02g02540.1				GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0016021 - integral to membrane, GO:0009630 - gravitropism, GO:0004970 - ionotropic glutamate receptor activity, GO:0004965 - GABA-B receptor activity, GO:0010107 - potassium ion import, GO:0005886 - plasma membrane, GO:0045087 - innate immune response, GO:0005262 - calcium channel activity	TO:0006001 - salt tolerance	
15500	_	OsGLR3.3, GLR3.3, OsGLR3.5, GLR3.5	_	Glutamate receptor homolog 3.3, GLUTAMATE RECEPTOR-LIKE 3.5			6	LOC_Os06g06130. OsGLR3.5 in Ni et al. 2016.	 Biochemical character	Os06g0155000	LOC_Os06g06130.1				GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0005886 - plasma membrane, GO:0004970 - ionotropic glutamate receptor activity		
15501	_	OsGLR3.4, GLR3.4	_	Glutamate receptor homolog 3.4			6	LOC_Os06g13730. GO:0035864: response to potassium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0246600	LOC_Os06g13730.1				GO:0004970 - ionotropic glutamate receptor activity, GO:0051592 - response to calcium ion, GO:0046686 - response to cadmium ion		
15502	_	OsGLR3.5, GLR3.5, OsGLR3.3, GLR3.3	_	Glutamate receptor homolog 3.5, GLUTAMATE RECEPTOR-LIKE 3.3			6	LOC_Os06g46670. OsGLR3.3 in Ni et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0680500	LOC_Os06g46670.3, LOC_Os06g46670.2				GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0005886 - plasma membrane, GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
15503	_	OsGLR3.6, GLR3.6, OsGLR3.4, GLR3.4	_	Glutamate receptor homolog 3.6, GLUTAMATE RECEPTOR-LIKE 3.4			7	LOC_Os07g01310. OsGLR3.4 in Ni et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0103100	LOC_Os07g01310.1				GO:0004965 - GABA-B receptor activity, GO:0034220 - ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0005886 - plasma membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0004970 - ionotropic glutamate receptor activity	TO:0000303 - cold tolerance	
15504	_	OsGLR3.7	_	Glutamate receptor homolog 3.7			7		 Biochemical character	Os07g0522600	LOC_Os07g33790.1				GO:0004965 - GABA-B receptor activity, GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
15505	_	OsGLR3.8	_	Glutamate receptor homolog 3.8			9	GO:0071311: cellular response to acetate. GO:0071230: cellular response to amino acid stimulus. GO:0071260: cellular response to mechanical stimulus.	 Biochemical character	Os09g0485700	LOC_Os09g31160.1				GO:0009611 - response to wounding, GO:0019722 - calcium-mediated signaling, GO:0070417 - cellular response to cold, GO:0015276 - ligand-gated ion channel activity, GO:0008066 - glutamate receptor activity, GO:0005262 - calcium channel activity		
15506	_	OsGLR4.1	_	Glutamate receptor homolog 4.1			6		 Biochemical character	Os06g0188400	LOC_Os06g08880.1				GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0004970 - ionotropic glutamate receptor activity, GO:0034220 - ion transmembrane transport, GO:0016020 - membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway		
15507	_	OsGLR4.2	_	Glutamate receptor homolog 4.2			6		 Biochemical character	Os06g0188600	LOC_Os06g08890.1				GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016020 - membrane, GO:0034220 - ion transmembrane transport		
15508	_	OsGLR4.3	_	Glutamate receptor homolog 4.3			6		 Biochemical character	Os06g0188700	LOC_Os06g08900.1				GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0034220 - ion transmembrane transport, GO:0004970 - ionotropic glutamate receptor activity		
15509	_	OsGLR4.4	_	Glutamate receptor homolog 4.4			6		 Biochemical character	Os06g0188800	LOC_Os06g08910.3, LOC_Os06g08910.2, LOC_Os06g08910.1				GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway		
15510	_	OsGLR4.5	_	Glutamate receptor homolog 4.5			6		 Biochemical character	Os06g0189100	LOC_Os06g08930.1				GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway		
15511	_	OsGLR4.6	_	Glutamate receptor homolog 4.6			6		 Biochemical character	Os06g0190000	LOC_Os06g09050.1				GO:0005215 - transporter activity		
15512	_	OsGLR4.7	_	Glutamate receptor homolog 4.7			6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0190500	LOC_Os06g09090.4, LOC_Os06g09090.3, LOC_Os06g09090.2, LOC_Os06g09090.1					TO:0000276 - drought tolerance	
15513	_	OsGLR4.8	_	Glutamate receptor homolog 4.8			6		 Biochemical character	Os06g0190700	LOC_Os06g09120.1				GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0016021 - integral to membrane, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0004970 - ionotropic glutamate receptor activity		
15514	_	OsGLR4.9, GLR4.9, OsGLR1.3, GLR1.3	_	Glutamate receptor homolog 4.9, GLUTAMATE RECEPTOR-LIKE 1.3			6	LOC_Os06g09130. OsGLR1.3 in Ni et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0190800	LOC_Os06g09130.1				GO:0005886 - plasma membrane, GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
15515	_	OsV4	_	virescent 4		osv4	4	a pentatricopeptide repeat protein.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os04g0475500	LOC_Os04g39970.1					TO:0002715 - chloroplast development trait, TO:0000303 - cold tolerance	
15516	_	AWPM-19, PM19, OsPM1, OsPM19L1, PM1, PM19L1, OsAWPM-19, OsPM19	_	plasma membrane protein 1, AWPM-19-like protein 1			5	LOC_Os05g31670. OsPM1 in Zheng et al. 2009, Yao et al. 2018. a homologue gene of wheat plasma membrane protein (WPM-1). OsPM19L1 in Chen et al. 2015. AWPM-19 Family Protein. GO:0080168: abscisic acid transport. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait.	 Reproductive organ - Inflorescence,  Tolerance and resistance - Stress tolerance	Os05g0381400	LOC_Os05g31670.1				GO:0010029 - regulation of seed germination, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0012505 - endomembrane system, GO:0005886 - plasma membrane, GO:0009738 - abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0010229 - inflorescence development	TO:0000095 - osmotic response sensitivity, TO:0002667 - abscisic acid content, TO:0000621 - inflorescence development trait, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0009009 - plant embryo , PO:0000293 - guard cell , PO:0009015 - portion of vascular tissue , PO:0007057 - 0 seed germination stage , PO:0001083 - inflorescence development stage , PO:0020104 - leaf sheath 
15517	_	Hsp90, OsHSP90.1	_	Heat shock protein 90.1			4	AtHSP90.1 homolog.	 Tolerance and resistance - Stress tolerance	Os04g0107900	LOC_Os04g01740.1				GO:0006457 - protein folding, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0006950 - response to stress	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
15518	_	GPA3	_	GLUTELIN PRECURSOR ACCUMULATION3, glutelin precursor accumulation 3		gpa3	3		 Seed - Physiological traits - Storage substances	Os03g0835800	LOC_Os03g61950.2, LOC_Os03g61950.1					TO:0000104 - floury endosperm, TO:0002653 - endosperm storage protein content	
15520	MATE1	OsMATE1	MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 1	Multidrug and Toxic compound Extrusion protein 1	MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 1		3	LOC_Os03g08900.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0188100	LOC_Os03g08900.1				GO:0015297 - antiporter activity, GO:0015238 - drug transporter activity, GO:0016020 - membrane	TO:0000164 - stress trait, TO:0000112 - disease resistance	
15521	MATE2	OsMATE2	MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 2	Multidrug and Toxic compound Extrusion protein 2	MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 2		3	LOC_Os05g48040. KC631818.1 TO:0006054: arsenic content trait.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0554000	LOC_Os05g48040.4, LOC_Os05g48040.3, LOC_Os05g48040.2, LOC_Os05g48040.1				GO:0015238 - drug transporter activity, GO:0009507 - chloroplast, GO:0051238 - sequestering of metal ion, GO:0005774 - vacuolar membrane, GO:0046685 - response to arsenic, GO:0009611 - response to wounding, GO:0015297 - antiporter activity, GO:0015691 - cadmium ion transport	TO:0000164 - stress trait, TO:0000112 - disease resistance	
15522	_	OsXPB2	_	Xeroderma pigmentosum (XP) complementation group of protein B2			1		 Tolerance and resistance - Stress tolerance	Os01g0691600	LOC_Os01g49680.1				GO:0004003 - ATP-dependent DNA helicase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0006289 - nucleotide-excision repair, GO:0010224 - response to UV-B, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000161 - radiation response trait	
15523	_	OsXPD, XPD	_	Xeroderma pigmentosum (XP) complementation group of protein D, XERODERMA PIGMENTOSUM D			5	LOC_Os05g05260. TFIIH sub-complex.	 Tolerance and resistance - Stress tolerance	Os05g0144800	LOC_Os05g05260.1				GO:0003677 - DNA binding, GO:0009411 - response to UV, GO:0004003 - ATP-dependent DNA helicase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006289 - nucleotide-excision repair, GO:0009408 - response to heat	TO:0006001 - salt tolerance, TO:0000161 - radiation response trait	
15524	_	OsTFIIS	_	Transcription Elongation Factor II-S			7		 Tolerance and resistance - Stress tolerance,  Other	Os07g0229700	LOC_Os07g12630.1				GO:0032784 - regulation of RNA elongation, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent	TO:0006001 - salt tolerance, TO:0000161 - radiation response trait	
15525	_	OsTFIIS-like gene, OsMed26_3, Med26_3	_	Transcription Elongation Factor II-S-like gene, Mediator 26_3			12	LOC_Os12g06850.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0165700	LOC_Os12g06850.4, LOC_Os12g06850.3, LOC_Os12g06850.2, LOC_Os12g06850.1				GO:0003677 - DNA binding, GO:0003746 - translation elongation factor activity, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0006351 - transcription, DNA-dependent	TO:0006001 - salt tolerance, TO:0000161 - radiation response trait	
15526	_		_				8		 Biochemical character,  Vegetative organ - Leaf	Os08g0290700	LOC_Os08g19420.1				GO:0008171 - O-methyltransferase activity	TO:0000124 - flag leaf angle	
15527	_	OsGIF1, GIF1	_	GRF-interacting factor 1			11	TO:0000816: inflorescence bract anatomy and morphology trait.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0615200	LOC_Os11g40100.3, LOC_Os11g40100.2, LOC_Os11g40100.1					TO:0006022 - floral organ development trait, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000240 - sterile lemma length	
15528	_	OsGIF2	_	GRF-interacting factor 2													
15529	_	OsMYB48, MYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59	_	MYB transcription factor 48			1	LOC_Os01g74410. OsMYB59 in Chen et al. 2018.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0975300	LOC_Os01g74410.2, LOC_Os01g74410.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002667 - abscisic acid content	
15530	_	GAPDH, OsGAPDH, OsGapC2	_	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic GAPDH2, cytosolic glyceraldehyde-3-phosphate dehydrogenase 2			4	Q7FAH2. D16096. LOC_Os04g40950.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0486600	LOC_Os04g40950.3, LOC_Os04g40950.2, LOC_Os04g40950.1				GO:0009507 - chloroplast, GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, GO:0005507 - copper ion binding, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0042742 - defense response to bacterium, GO:0048653 - anther development, GO:0050661 - NADP or NADPH binding, GO:0051287 - NAD or NADH binding, GO:0006096 - glycolysis, GO:0009506 - plasmodesma, GO:0006979 - response to oxidative stress, GO:0008270 - zinc ion binding, GO:0005618 - cell wall, GO:0005739 - mitochondrion, GO:0046686 - response to cadmium ion		PO:0001004 - anther development stage 
15531	UBQ5	RPS27a, OsUBQ5, OsRPS27a	UBIQUITIN 5	Ubiquitin 5, Monoubiquitin-tail protein 1, ribosomal protein S27, ribosomal protein small subunit 27	UBIQUITIN 5		1	LOC_Os01g22490. Q9ARZ9 (Cleaved into the following 2 chains:Ubiquitin and 40S ribosomal protein S27a-1) (by UniProt). D15997. Monoubiquitin-tail protein 1 in Sasaki et al. 1994.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0328400	LOC_Os01g22490.1				GO:0005794 - Golgi apparatus, GO:0042742 - defense response to bacterium, GO:0009506 - plasmodesma, GO:0050832 - defense response to fungus, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0046872 - metal ion binding, GO:0022627 - cytosolic small ribosomal subunit, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
15532	18S  rRNA		18S RIBOSOMAL RNA	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA				AK059783.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
15533	_	OsCCD8a, OsCCD8c, CCD8a, CCD8c	_	carotenoid cleavage dioxygenase 8a, CATOTENOID DIOXYGENASE 8a, D10like			1	Q93VD5. an ortholog of Arabidopsis MAX4/CCD8. LOC_Os01g38580. OsCCD8a (Q93VD5) and OsCCD8c (Loc_Os01g38580) in Priya and Siva 2014. one of MAX4 orthologues.	 Biochemical character	Os01g0566500	LOC_Os01g38580.2, LOC_Os01g38580.1				GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0051213 - dioxygenase activity	TO:0000346 - tiller number	
15535	_	OsRMR3, OsRMR1, RMR1	_	receptor-like membrane Ring-H2 3, receptor homology region-transmembrane domain-RING-H2 (RMR) protein 1, ReMembR-H2 Protein 1			3	Q10R93. one of the Components of the Storage Protein Sorting Complex. OsRMR3 in Li et al. 2013.	 Biochemical character,  Seed - Physiological traits - Storage substances	Os03g0167500	LOC_Os03g07130.5, LOC_Os03g07130.4, LOC_Os03g07130.3, LOC_Os03g07130.2, LOC_Os03g07130.1				GO:0015031 - protein transport, GO:0016021 - integral to membrane, GO:0031902 - late endosome membrane, GO:0032586 - protein storage vacuole membrane, GO:0000139 - Golgi membrane, GO:0008270 - zinc ion binding	TO:0002653 - endosperm storage protein content	
15536	_	OsRMR2	_	receptor homology region-transmembrane domain-RING-H2 (RMR) protein 2, ReMembR-H2 Protein 2			8	Q69U49. one of the Components of the Storage Protein Sorting Complex.	 Biochemical character,  Seed - Physiological traits - Storage substances	Os08g0104300 	LOC_Os08g01360.3, LOC_Os08g01360.2, LOC_Os08g01360.1				GO:0008270 - zinc ion binding, GO:0032586 - protein storage vacuole membrane, GO:0031902 - late endosome membrane, GO:0016021 - integral to membrane, GO:0015031 - protein transport	TO:0002653 - endosperm storage protein content	
15537	_	OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33	_	Rp1-like 1, bacterial blight resistance-related gene 1, NBS-LRR protein rNBS33			5	LOC_Os05g30220. JQ845900. a Nuclear-Localized CC-NB-LRR Gene. GEO database: GSE39767. AF516889.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0365300	LOC_Os05g30220.1				GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000401 - plant growth hormone sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000432 - temperature response trait, TO:0000615 - abscisic acid sensitivity, TO:0000429 - salt sensitivity, TO:0000175 - bacterial blight disease resistance	
15538	_	TPS, OsTPS30	_	terpene synthase, terpene synthase 30			8	LOC_Os08g07080. OsTPS30 in Lee et al. 2014.	 Biochemical character	Os08g0167800	LOC_Os08g07080.1				GO:0010333 - terpene synthase activity		
15539	_	OsCFR	_	"\"chloroplastic fructose 1, 6-bisphosphatase\", chloroplastic FruP2ase, \"fructose-1, 6-bisphosphatase plastidic isoform\", \"Plastidic Fructose-1, 6-Bisphosphatase\""			3	AB007194, EU370973. O64422.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0267300	LOC_Os03g16050.1				GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0030388 - fructose 1,6-bisphosphate metabolic process, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0010319 - stromule, GO:0019253 - reductive pentose-phosphate cycle, GO:0009570 - chloroplast stroma, GO:0009409 - response to cold, GO:0005985 - sucrose metabolic process, GO:0046872 - metal ion binding, GO:0048046 - apoplast	TO:0006001 - salt tolerance, TO:0000495 - chlorophyll content, TO:0002657 - oxidative stress	
15540	MOC2	FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1	MONOCULM 2	cytosolic fructose 1, 6-bisphosphatase, cytosolic FruP2ase, monoculm 2, monoculm2, cytosolic fructose-1, 6-bisphosphatase 1	CYTOSOLIC FRUCTOSE-1,6-BISPHOSPHATASE 1	moc2	1	Q0JHF8.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0866400	LOC_Os01g64660.4, LOC_Os01g64660.3, LOC_Os01g64660.2, LOC_Os01g64660.1				GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0030388 - fructose 1,6-bisphosphate metabolic process, GO:0015979 - photosynthesis, GO:0046872 - metal ion binding, GO:0009750 - response to fructose stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005986 - sucrose biosynthetic process, GO:0005983 - starch catabolic process, GO:0005829 - cytosol, GO:0005634 - nucleus	TO:0000515 - relative growth rate, TO:0000329 - tillering ability, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000346 - tiller number	
15541	IMPA1B		IMPORTIN ALPHA 1B	importin alpha 1b				AB024311 (AB034311 in Jiang et al. 2001)							GO:0048471 - perinuclear region of cytoplasm, GO:0005634 - nucleus, GO:0006606 - protein import into nucleus, GO:0008565 - protein transporter activity		
15542	STOW-OS1	Stow-Os1	TRANSPOSON MITE STOWAWAY OS-1	Stowaway-Os1, Stowaway Os-1, MITE element Stowaway Os-1, Stowaway Os-1 MITE transposon, transposable element Stowaway Os-1				Stowaway-Os1 is located within intron 2 of the heat shock protein 82A gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15543	MASHU	Mashu	TRANSPOSON MITE MASHU	MITE element Mashu, Mashu MITE transposon, transposable element Mashu					 Other						GO:0032196 - transposition		
15544	IMPB1	Importin beta 1	IMPORTIN BETA 1	importin beta, importin beta 1				AB011270	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility						GO:0005643 - nuclear pore, GO:0006886 - intracellular protein transport, GO:0008565 - protein transporter activity, GO:0006913 - nucleocytoplasmic transport		
15545	IMPB2	Importin beta 2	IMPORTIN BETA 2	importin beta, importin beta 2				AB011271							GO:0008565 - protein transporter activity, GO:0006886 - intracellular protein transport, GO:0005643 - nuclear pore, GO:0006913 - nucleocytoplasmic transport		
15546	STOW-OS25	Stow-Os25	TRANSPOSON MITE STOWAWAY OS-25	Stowaway Os-25, MITE element Stowaway Os-25, Stowaway Os-25 MITE transposon, transposable element Stowaway Os-25					 Other						GO:0032196 - transposition		
15547	STOW-OS50	Stow-Os50	TRANSPOSON MITE STOWAWAY OS-50	Stowaway Os-50, MITE element Stowaway Os-50, Stowaway Os-50 MITE transposon, transposable element Stowaway Os-50					 Other						GO:0032196 - transposition		
15548	STOW-OS5	Stow-Os5	TRANSPOSON MITE STOWAWAY OS-5	Stowaway-Os5, Stowaway Os-5, MITE element Stowaway Os-5, Stowaway Os-5 MITE transposon, transposable element Stowaway Os-5			2	Stowaway-Os5 is located within 5' of the PCNA gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15549	STOW-OS6	Stow-Os6	TRANSPOSON MITE STOWAWAY OS-6	Stowaway-Os6, Stowaway-Os6, Stowaway Os-6, MITE element Stowaway Os-6, Stowaway Os-6 MITE transposon, transposable element Stowaway Os-6			2	Stowaway-Os6 is located within 5' of the PCNA gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15550	STOW-OS32	Stow-Os32	TRANSPOSON MITE STOWAWAY OS-32	Stowaway Os-32, MITE element Stowaway Os-32, Stowaway Os-32 MITE transposon, transposable element Stowaway Os-32					 Other						GO:0032196 - transposition		
15551	STOW-OS45	Stow-Os45	TRANSPOSON MITE STOWAWAY OS-45	Stowaway Os-45, MITE element Stowaway Os-45, Stowaway Os-45 MITE transposon, transposable element Stowaway Os-45					 Other						GO:0032196 - transposition		
15552	STOW-OS10	Stow-Os10	TRANSPOSON MITE STOWAWAY OS-10	Stowaway Os-10, MITE element Stowaway Os-10, Stowaway Os-10 MITE transposon, transposable element Stowaway Os-10					 Other						GO:0032196 - transposition		
15553	STOW-OS38	Stow-Os38	TRANSPOSON MITE STOWAWAY OS-38	Stowaway Os-38, MITE element Stowaway Os-38, Stowaway Os-38 MITE transposon, transposable element Stowaway Os-38					 Other						GO:0032196 - transposition		
15554	STOW-OS8	Stow-Os8	TRANSPOSON MITE STOWAWAY OS-8	Stowaway Os-8, MITE element Stowaway Os-8, Stowaway Os-8 MITE transposon, transposable element Stowaway Os-8					 Other						GO:0032196 - transposition		
15555	STOW-OS23	Stow-Os23	TRANSPOSON MITE STOWAWAY OS-23	Stowaway Os-23, MITE element Stowaway Os-23, Stowaway Os-23 MITE transposon, transposable element Stowaway Os-23					 Other						GO:0032196 - transposition		
15556	STOW-OS18	Stow-Os18	TRANSPOSON MITE STOWAWAY OS-18	Stowaway Os-18, MITE element Stowaway Os-18, Stowaway Os-18 MITE transposon, transposable element Stowaway Os-18					 Other						GO:0032196 - transposition		
15557	STOW-OS24	Stow-Os24	TRANSPOSON MITE STOWAWAY OS-24	Stowaway Os-24, MITE element Stowaway Os-24, Stowaway Os-24 MITE transposon, transposable element Stowaway Os-24					 Other						GO:0032196 - transposition		
15558	STOW-OS30	Stow-Os30	TRANSPOSON MITE STOWAWAY OS-30	Stowaway Os-30, MITE element Stowaway Os-30, Stowaway Os-30 MITE transposon, transposable element Stowaway Os-30					 Other						GO:0032196 - transposition		
15559	STOW-OS15	Stow-Os15	TRANSPOSON MITE STOWAWAY OS-15	Stowaway Os-15, MITE element Stowaway Os-15, Stowaway Os-15 MITE transposon, transposable element Stowaway Os-15					 Other						GO:0032196 - transposition		
15560	STOW-OS26	Stow-Os26	TRANSPOSON MITE STOWAWAY OS-26	Stowaway Os-26, MITE element Stowaway Os-26, Stowaway Os-26 MITE transposon, transposable element Stowaway Os-26					 Other						GO:0032196 - transposition		
15561	STOW-OS46	Stow-Os46	TRANSPOSON MITE STOWAWAY OS-46	Stowaway Os-46, MITE element Stowaway Os-46, Stowaway Os-46 MITE transposon, transposable element Stowaway Os-46					 Other						GO:0032196 - transposition		
15562	STOW-OS21	Stow-Os21	TRANSPOSON MITE STOWAWAY OS-21	Stowaway Os-21, MITE element Stowaway Os-21, Stowaway Os-21 MITE transposon, transposable element Stowaway Os-21					 Other						GO:0032196 - transposition		
15563	STOW-OS3	Stow-Os3	TRANSPOSON MITE STOWAWAY OS-3	Stowaway-Os3, Stowaway Os-3, MITE element Stowaway Os-3, Stowaway Os-3 MITE transposon, transposable element Stowaway Os-3			6	Stowaway-Os3 is located within intron 13 of OsWAXY gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15564	STOW-OS13	Stow-Os13	TRANSPOSON MITE STOWAWAY OS-13	Stowaway Os-13, MITE element Stowaway Os-13, Stowaway Os-13 MITE transposon, transposable element Stowaway Os-13					 Other						GO:0032196 - transposition		
15565	STOW-OS28	Stow-Os28	TRANSPOSON MITE STOWAWAY OS-28	Stowaway Os-28, MITE element Stowaway Os-28, Stowaway Os-28 MITE transposon, transposable element Stowaway Os-28					 Other						GO:0032196 - transposition		
15566	STOW-OS34	Stow-Os34	TRANSPOSON MITE STOWAWAY OS-34	Stowaway Os-34, MITE element Stowaway Os-34, Stowaway Os-34 MITE transposon, transposable element Stowaway Os-34					 Other						GO:0032196 - transposition		
15567	STOW-OS9	Stow-Os9	TRANSPOSON MITE STOWAWAY OS-9	Stowaway Os-9, MITE element Stowaway Os-9, Stowaway Os-9 MITE transposon, transposable element Stowaway Os-9					 Other						GO:0032196 - transposition		
15568	STOW-OS52	Stow-Os52	TRANSPOSON MITE STOWAWAY OS-52	Stowaway Os-52, MITE element Stowaway Os-52, Stowaway Os-52 MITE transposon, transposable element Stowaway Os-52					 Other						GO:0032196 - transposition		
15569	STOW-OS51	Stow-Os51	TRANSPOSON MITE STOWAWAY OS-51	Stowaway Os-51, MITE element Stowaway Os-51, Stowaway Os-51 MITE transposon, transposable element Stowaway Os-51					 Other						GO:0032196 - transposition		
15570	STOW-OS37	Stow-Os37	TRANSPOSON MITE STOWAWAY OS-37	Stowaway Os-37, MITE element Stowaway Os-37, Stowaway Os-37 MITE transposon, transposable element Stowaway Os-37					 Other						GO:0032196 - transposition		
15571	STOW-OS16	Stow-Os16	TRANSPOSON MITE STOWAWAY OS-16	Stowaway Os-16, MITE element Stowaway Os-16, Stowaway Os-16 MITE transposon, transposable element Stowaway Os-16					 Other						GO:0032196 - transposition		
15572	STOW-OS35	Stow-Os35	TRANSPOSON MITE STOWAWAY OS-35	Stowaway Os-35, MITE element Stowaway Os-35, Stowaway Os-35 MITE transposon, transposable element Stowaway Os-35					 Other						GO:0032196 - transposition		
15573	STOW-OS49	Stow-Os49	TRANSPOSON MITE STOWAWAY OS-49	Stowaway Os-49, MITE element Stowaway Os-49, Stowaway Os-49 MITE transposon, transposable element Stowaway Os-49					 Other						GO:0032196 - transposition		
15574	STOW-OS20	Stow-Os20	TRANSPOSON MITE STOWAWAY OS-20	Stowaway Os-20, MITE element Stowaway Os-20, Stowaway Os-20 MITE transposon, transposable element Stowaway Os-20					 Other						GO:0032196 - transposition		
15575	STOW-OS42	Stow-Os42	TRANSPOSON MITE STOWAWAY OS-42	Stowaway Os-42, MITE element Stowaway Os-42, Stowaway Os-42 MITE transposon, transposable element Stowaway Os-42					 Other						GO:0032196 - transposition		
15576	STOW-OS12	Stow-Os12	TRANSPOSON MITE STOWAWAY OS-12	Stowaway Os-12, MITE element Stowaway Os-12, Stowaway Os-12 MITE transposon, transposable element Stowaway Os-12					 Other						GO:0032196 - transposition		
15577	STOW-OS29	Stow-Os29	TRANSPOSON MITE STOWAWAY OS-29	Stowaway Os-29, MITE element Stowaway Os-29, Stowaway Os-29 MITE transposon, transposable element Stowaway Os-29					 Other						GO:0032196 - transposition		
15578	STOW-OS14	Stow-Os14	TRANSPOSON MITE STOWAWAY OS-14	Stowaway Os-14, MITE element Stowaway Os-14, Stowaway Os-14 MITE transposon, transposable element Stowaway Os-14					 Other						GO:0032196 - transposition		
15579	STOW-OS11	Stow-Os11	TRANSPOSON MITE STOWAWAY OS-11	Stowaway Os-11, MITE element Stowaway Os-11, Stowaway Os-11 MITE transposon, transposable element Stowaway Os-11					 Other						GO:0032196 - transposition		
15580	MAR7	Osmar7	TC1/MARINER TRANSPOSABLE ELEMENT 7	Mariner 7, mariner-like element 7, Tc1/Mariner-like element 7					 Other						GO:0032196 - transposition		
15581	MAR27I	Osmar27i	TC1/MARINER TRANSPOSABLE ELEMENT 27I	Mariner 27i, mariner-like element 27i, Tc1/Mariner-like element 27i					 Other						GO:0032196 - transposition		
15582	MAR29I	Osmar29i	TC1/MARINER TRANSPOSABLE ELEMENT 29I	Mariner 29i, mariner-like element 29i, Tc1/Mariner-like element 29i					 Other						GO:0032196 - transposition		
15583	MAR8A	Osmar8a	TC1/MARINER TRANSPOSABLE ELEMENT 8A	Mariner 8a, mariner-like element 8a, Tc1/Mariner-like element 8a					 Other						GO:0032196 - transposition		
15584	MAR32I	Osmar32i	TC1/MARINER TRANSPOSABLE ELEMENT 32I	Mariner 32i, mariner-like element 32i, Tc1/Mariner-like element 32i					 Other						GO:0032196 - transposition		
15585	MAR19	Osmar19	TC1/MARINER TRANSPOSABLE ELEMENT 19	Mariner 19, mariner-like element 19, Tc1/Mariner-like element 19					 Other						GO:0032196 - transposition		
15586	MAR11	Osmar11	TC1/MARINER TRANSPOSABLE ELEMENT 11	Mariner 11, mariner-like element 11, Tc1/Mariner-like element 11					 Other						GO:0032196 - transposition		
15587	MAR14A	Osmar14A	TC1/MARINER TRANSPOSABLE ELEMENT 14A	Mariner 14A, mariner-like element 14A, Tc1/Mariner-like element 14A					 Other						GO:0032196 - transposition		
15588	MAR14B	Osmar14B	TC1/MARINER TRANSPOSABLE ELEMENT 14B	Mariner 14B, mariner-like element 14B, Tc1/Mariner-like element 14B					 Other						GO:0032196 - transposition		
15589	MAR14C	Osmar14C	TC1/MARINER TRANSPOSABLE ELEMENT 14C	Mariner 14C, mariner-like element 14C, Tc1/Mariner-like element 14C					 Other						GO:0032196 - transposition		
15590	MAR16	Osmar16	TC1/MARINER TRANSPOSABLE ELEMENT 16	Mariner 16, mariner-like element 16, Tc1/Mariner-like element 16					 Other						GO:0032196 - transposition		
15591	MAR5A	Osmar5A	TC1/MARINER TRANSPOSABLE ELEMENT 5A	Mariner 5A, mariner-like element 5A, Tc1/Mariner-like element 5A					 Other						GO:0032196 - transposition		
15592	MAR2	Osmar2	TC1/MARINER TRANSPOSABLE ELEMENT 2	Mariner 2, mariner-like element 2, Tc1/Mariner-like element 2					 Other						GO:0032196 - transposition		
15593	MAR24	Osmar24	TC1/MARINER TRANSPOSABLE ELEMENT 24	Mariner 24, mariner-like element 24, Tc1/Mariner-like element 24					 Other						GO:0032196 - transposition		
15594	MAR24BI	Osmar24Bi	TC1/MARINER TRANSPOSABLE ELEMENT 24BI	Mariner 24Bi, mariner-like element 24Bi, Tc1/Mariner-like element 24Bi					 Other						GO:0032196 - transposition		
15595	MAR21	Osmar21	TC1/MARINER TRANSPOSABLE ELEMENT 21	Mariner 21, mariner-like element 21, Tc1/Mariner-like element 21					 Other						GO:0032196 - transposition		
15596	MAR28I	Osmar28i	TC1/MARINER TRANSPOSABLE ELEMENT 28I	Mariner 28i, mariner-like element 28i, Tc1/Mariner-like element 28i					 Other						GO:0032196 - transposition		
15597	MAR17A	Osmar17A	TC1/MARINER TRANSPOSABLE ELEMENT 17A	Mariner 17A, mariner-like element 17A, Tc1/Mariner-like element 17A					 Other						GO:0032196 - transposition		
15598	MAR13	Osmar13	TC1/MARINER TRANSPOSABLE ELEMENT 13	Mariner 13, mariner-like element 13, Tc1/Mariner-like element 13					 Other						GO:0032196 - transposition		
15599	MAR9A	Osmar9A	TC1/MARINER TRANSPOSABLE ELEMENT 9A	Mariner 9A, mariner-like element 9A, Tc1/Mariner-like element 9A					 Other						GO:0032196 - transposition		
15600	MAR9B	Osmar9B	TC1/MARINER TRANSPOSABLE ELEMENT 9B	Mariner 9B, mariner-like element 9B, Tc1/Mariner-like element 9B					 Other						GO:0032196 - transposition		
15601	MAR10A	Osmar10A	TC1/MARINER TRANSPOSABLE ELEMENT 10A	Mariner 10A, mariner-like element 10A, Tc1/Mariner-like element 10A					 Other						GO:0032196 - transposition		
15602	MAR18I	Osmar18i	TC1/MARINER TRANSPOSABLE ELEMENT 18I	Mariner 18i, mariner-like element 18i, Tc1/Mariner-like element 18i					 Other						GO:0032196 - transposition		
15603	STOW-OS4	Stow-Os4	TRANSPOSON MITE STOWAWAY OS-4	Stowaway-Os4, Stowaway Os-4, MITE element Stowaway Os-4, Stowaway Os-4 MITE transposon, transposable element Stowaway Os-4			6	Stowaway-Os4 is located within 3' of OsWAXY gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15604	STOW-OS2	Stow-Os2	TRANSPOSON MITE STOWAWAY OS-2	Stowaway-Os2, Stowaway Os-2, MITE element Stowaway Os-2, Stowaway Os-2 MITE transposon, transposable element Stowaway Os-2			1	Stowaway-Os2 is located within 3' of the alpha amylase C gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15605	STOW-OS7	Stow-Os7	TRANSPOSON MITE STOWAWAY OS-7	Stowaway-Os7, Stowaway Os-7, MITE element Stowaway Os-7, Stowaway Os-7 MITE transposon, transposable element Stowaway Os-7			9	Stowaway-Os7 is located within intron 2 of the alpha amylase 3A gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15606	_	OsMYB30, MYB30, OsMYB5P, MYB5P	_	Myb transcription factor 4 paralog, OsMyb4 paralog		osmyb30	2	LOC_Os02g41510. Q6K1S6. GO:2000904: regulation of starch metabolic process. GO:0044212: transcription regulatory region DNA binding. TO:0020102: phosphate content. OsMYB5P in Yang et al. 2018. a MAMP-Responsive MYB Transcription Factor.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0624300	LOC_Os02g41510.1				GO:0009651 - response to salt stress, GO:0042594 - response to starvation, GO:0050832 - defense response to fungus, GO:0043565 - sequence-specific DNA binding, GO:0030154 - cell differentiation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0032502 - developmental process, GO:0048364 - root development, GO:0048367 - shoot development, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0002238 - response to molecule of fungal origin, GO:0010200 - response to chitin, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0005983 - starch catabolic process, GO:0003677 - DNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009408 - response to heat	TO:0000227 - root length, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000357 - growth and development trait, TO:0000291 - carbohydrate content, TO:0000207 - plant height, TO:0000675 - ferulic acid content, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000432 - temperature response trait, TO:0000074 - blast disease	
15607	_		_	OsMyb4-like protein			8			Os08g0486300	LOC_Os08g37970.1				GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0003677 - DNA binding		
15608	_	OsMYB58/63-L	_	OsMyb4-like protein			2	LOC_Os02g46780.		Os02g0695200	LOC_Os02g46780.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
15609	DU12	du12(t)	DULL ENDOSPERM 12	Dull endosperm-12			6	A single recessive gene du12(t) that leads to thelow amylose character of Milyang262 was mapped to an 840-kb region on the distal region of the long arm of chromosome 6, delimited by SSR markers RM20662 and RM412, and co-segregated by RM3765 and RM176.	 Seed - Physiological traits - Storage substances							TO:0000105 - dull endosperm, TO:0000196 - amylose content	
15610	_	Psd1	_	Photoperiod-sensitive dwarf 1			1	Os01g0822900 is the candidate gene of the Psd1 locus.	 Vegetative organ - Culm							TO:0000229 - photoperiod sensitivity, TO:0000207 - plant height	
15611	_	OsHsp90, HSP90	_	rice 90kDa heat shock protein, heat-shock protein 90, heat-shock protein 82, heat shock protein 82, heat-shock protein 86			9	D22707, D16084, D15298. Os09g0482610 (in Ncbi and UniProt). LOC_Os09g30418/LOC_Os09g30438. Q07078 (Os09g0482600). HSP82 and Hsp86 in Sasaki et al. 1994.	 Tolerance and resistance - Stress tolerance	Os09g0482550/Os09g0482600					GO:0005794 - Golgi apparatus, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0006457 - protein folding, GO:0006950 - response to stress, GO:0005618 - cell wall, GO:0005634 - nucleus, GO:0005774 - vacuolar membrane, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0009570 - chloroplast stroma, GO:0048046 - apoplast		
15612	_	OsVHA-a1	_	vacuolar H+-ATPase subunit a1	_				 Biochemical character,  Tolerance and resistance - Stress tolerance							TO:0006001 - salt tolerance	
15613	_	VIP2, IPI1	_	Putative VIP2 protein, IPA1 INTERACTING PROTEIN1, IPA1 INTERACTING PROTEIN 1		ipi1, ipi1-1	1	LOC_Os01g24880. a RING-finger E3 ligase.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Character as QTL - Yield and productivity	Os01g0350900 	LOC_Os01g24880.2, LOC_Os01g24880.1				GO:0000209 - protein polyubiquitination, GO:0008270 - zinc ion binding, GO:0005634 - nucleus	TO:0006032 - panicle size, TO:0000017 - anatomy and morphology related trait, TO:0000371 - yield trait, TO:0000346 - tiller number, TO:0000437 - male sterility	
15614	_	OsZHD1, ZHD1	_	zinc finger homeodomain class homeobox transcription factor 1			9	C97855. Q6YXH5.	 Vegetative organ - Leaf	Os09g0466400	LOC_Os09g29130.1				GO:0009793 - embryonic development ending in seed dormancy, GO:0003677 - DNA binding	TO:0002681 - leaf curling, TO:0000655 - leaf development trait	
15615	_	OsZHD2, ZHD2	_	zinc finger homeodomain class homeobox transcription factor 2			8	Q6ZB90.		Os08g0479400	LOC_Os08g37400.1				GO:0003677 - DNA binding		
15616	_	OsZHD3	_	zinc finger homeodomain class homeobox transcription factor 3			12	Q2QW44.		Os12g0208900	LOC_Os12g10630.1				GO:0003677 - DNA binding		
15617	_	OsZHD4	_	zinc finger homeodomain class homeobox transcription factor 4			11	Q53N87.		Os11g0243300	LOC_Os11g13930.1				GO:0003677 - DNA binding		
15618	_	OsZHD5	_	zinc finger homeodomain class homeobox transcription factor 5			1	LOC_Os01g44430. Q5VM82.		Os01g0635550/Os01g0635600					GO:0003677 - DNA binding		
15619	_	OsZHD6	_	zinc finger homeodomain class homeobox transcription factor 6			5	Q688U3.		Os05g0579300	LOC_Os05g50310.1				GO:0003677 - DNA binding		
15620	_	OsZHD7	_	zinc finger homeodomain class homeobox transcription factor 7			2	Q8S3Q9.		Os02g0706600	LOC_Os02g47770.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
15621	_	OsZHD8	_	zinc finger homeodomain class homeobox transcription factor 8			4	Q7X7N3.		Os04g0434500	LOC_Os04g35500.1				GO:0003677 - DNA binding		
15622	_	OsZHD9	_	zinc finger homeodomain class homeobox transcription factor 9			9	Q6ER21.		Os09g0414600	LOC_Os09g24820.1				GO:0003677 - DNA binding		
15623	_	OsZHD10	_	zinc finger homeodomain class homeobox transcription factor 10			11	LOC_Os11g34010.			LOC_Os11g34010						
15624	_	OsZHD11	_	zinc finger homeodomain class homeobox transcription factor 11			3	Q10DV5.		Os03g0718500	LOC_Os03g50920.1				GO:0003677 - DNA binding		
15626	_	OsHPR1, HPR1	_	hydroxypyruvate reductase 1, peroxisomal HPR1		hpr1	2		 Biochemical character	Os02g0101500 	LOC_Os02g01150.4, LOC_Os02g01150.3, LOC_Os02g01150.2, LOC_Os02g01150.1				GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0051287 - NAD or NADH binding		
15627	_	OsHPR2, HPR2, OsHPR2-1, OsHPR2-2	_	hydroxypyruvate reductase 2, cytosolic HPR		hpr2	1		 Biochemical character	Os01g0228600	LOC_Os01g12830.2, LOC_Os01g12830.1				GO:0005829 - cytosol, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0051287 - NAD or NADH binding		
15628	_	OsDG2	_	delayed greening 2		osdg2	2	a chloroplast-targeted glycine-rich protein (GRP).	 Coloration - Chlorophyll	Os02g0606000	LOC_Os02g39340.2, LOC_Os02g39340.1					TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content	
15629	_	OsKTN80b	_	katanin P80b, Katanin regulatory subunit P80b			4	a katanin P80 ortholog. a microtubule-severing enzyme.		Os04g0677700	LOC_Os04g58130.1				GO:0008352 - katanin complex, GO:0051013 - microtubule severing		
15630	_	OsKTN60	_	katanin P60, Katanin catalytic subunit P60			1	a microtubule-severing enzyme.	 Vegetative organ - Root	Os01g0683100 	LOC_Os01g49000.1				GO:0005874 - microtubule, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005813 - centrosome, GO:0005819 - spindle, GO:0008568 - microtubule-severing ATPase activity, GO:0009825 - multidimensional cell growth, GO:0009832 - plant-type cell wall biogenesis, GO:0010091 - trichome branching, GO:0043622 - cortical microtubule organization, GO:0051013 - microtubule severing	TO:0000227 - root length	
15631	SLB1	OsSLB1	STRIGOLACTONE BIOSYNTHESIS 1	SL biosynthesis gene 1			1	a cytochrome P450 gene with high homology to the Arabidopsis SL biosynthesis gene, MAX1. one of MAX1 orthologues. Homolog of the Arabidopsis MAX1 for strigoractone biosynthesis. Os900 in Wang et al. 2018.	 Biochemical character,  Tolerance and resistance	Os01g0700900	LOC_Os01g50530.1, LOC_Os01g50520.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000329 - tillering ability, TO:0000476 - growth hormone content, TO:0000444 - parasitic weed	
15632	SLB2	CYP711A1, OsCYP711A1	STRIGOLACTONE BIOSYNTHESIS 2	SL biosynthesis gene 2			1	a cytochrome P450 gene with high homology to the Arabidopsis SL biosynthesis gene, MAX1. JX235696.Present in QTL qSTRIGOLACTONE BIOSYNTHESIS (qSLB1.1) identified in Azucena x Bala RIL population. one of MAX1 orthologues. Os1400 in Wang et al. 2018.	 Biochemical character,  Tolerance and resistance	Os01g0701400 	LOC_Os01g50580.1, LOC_Os01g50570.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding	TO:0000444 - parasitic weed, TO:0000476 - growth hormone content, TO:0000329 - tillering ability	
15633	_	OsMY1	_	myosin 1				DQ641916.									
15634	_		_	Sm gene, Sm family protein			1		 Tolerance and resistance - Insect resistance,  Other	Os01g0111200	LOC_Os01g02090.2, LOC_Os01g02090.1				GO:0017148 - negative regulation of translation, GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA, GO:0033962 - cytoplasmic mRNA processing body assembly, GO:0005829 - cytosol, GO:0010606 - positive regulation of cytoplasmic mRNA processing body assembly	TO:0000261 - insect damage resistance	
15635	_		_	Sm gene, Sm family protein			1	Q9LGE6.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0256900	LOC_Os01g15310.1				GO:0006397 - mRNA processing, GO:0005681 - spliceosomal complex, GO:0003723 - RNA binding, GO:0008380 - RNA splicing	TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait	
15636	_		_	Sm gene, Sm family protein			1			Os01g0866700	LOC_Os01g64690.1				GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex		
15637	_		_	Sm gene, Sm family protein			1		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0967000	LOC_Os01g73604.1				GO:0008380 - RNA splicing, GO:0020037 - heme binding, GO:0030532 - small nuclear ribonucleoprotein complex, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000168 - abiotic stress trait, TO:0000261 - insect damage resistance, TO:0006001 - salt tolerance	
15638	_		_	Sm gene, Sm family protein			2			Os02g0102700	LOC_Os02g01250.1				GO:0030529 - ribonucleoprotein complex, GO:0019013 - viral nucleocapsid		
15639	_		_	Sm gene, Sm family protein, Small nuclear ribonucleoprotein E			2	D15561.	 Other	Os02g0126700	LOC_Os02g03440.1				GO:0019013 - viral nucleocapsid, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005681 - spliceosomal complex		
15640	_		_	Sm gene, Sm family protein			2		 Other	Os02g0177500	LOC_Os02g08090.2, LOC_Os02g08090.1				GO:0005634 - nucleus, GO:0006396 - RNA processing, GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex		
15641	_		_	Sm gene, Sm family protein, smD small nucler ribonucleoprotein			2	D29731.		Os02g0586500	LOC_Os02g37430.1				GO:0005829 - cytosol, GO:0030529 - ribonucleoprotein complex, GO:0005774 - vacuolar membrane, GO:0019013 - viral nucleocapsid		
15642	_		_	Sm gene, Sm family protein			3			Os03g0240800	LOC_Os03g13760.2, LOC_Os03g13760.1				GO:0005829 - cytosol, GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex, GO:0016604 - nuclear body, GO:0005730 - nucleolus		
15643	_		_	Sm gene, Sm family protein			3		 Tolerance and resistance - Disease resistance	Os03g0410900	LOC_Os03g29740.1				GO:0030529 - ribonucleoprotein complex, GO:0005829 - cytosol, GO:0005730 - nucleolus, GO:0019013 - viral nucleocapsid	TO:0000439 - fungal disease resistance	
15644	_		_	Sm gene, Sm family protein			4			Os04g0388900	LOC_Os04g31950.1						
15645	_		_	Sm gene, Sm family protein			4		 Tolerance and resistance - Stress tolerance	Os04g0445800	LOC_Os04g36810.1				GO:0000932 - cytoplasmic mRNA processing body, GO:0016070 - RNA metabolic process	TO:0000276 - drought tolerance	
15646	_		_	Sm gene, Sm family protein			4	LOC_Os04g39444.			LOC_Os04g39444						
15647	_		_	Sm gene, Sm family protein			5			Os05g0314100	LOC_Os05g24970.3, LOC_Os05g24970.2, LOC_Os05g24970.1				GO:0005829 - cytosol, GO:0005730 - nucleolus, GO:0030532 - small nuclear ribonucleoprotein complex, GO:0019013 - viral nucleocapsid, GO:0008380 - RNA splicing		
15648	_		_	Sm gene, Sm family protein			5			Os05g0389300	LOC_Os05g32310.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation		
15649	_		_	Sm gene, Sm family protein			5		 Tolerance and resistance - Insect resistance	Os05g0594900	LOC_Os05g51650.1					TO:0000261 - insect damage resistance	
15650	_		_	Sm gene, Sm family protein			6		 Tolerance and resistance - Insect resistance	Os06g0496000	LOC_Os06g30060.2, LOC_Os06g30060.1					TO:0000261 - insect damage resistance	
15651	_		_	Sm gene, Sm family protein			6			Os06g0677600	LOC_Os06g46390.1				GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex		
15652	_		_	Sm gene, Sm family protein			7			Os07g0166600	LOC_Os07g07220.1				GO:0003723 - RNA binding, GO:0030529 - ribonucleoprotein complex, GO:0005634 - nucleus		
15653	_		_	Sm gene, Sm family protein			7			Os07g0608700	LOC_Os07g41790.2				GO:0030529 - ribonucleoprotein complex, GO:0019013 - viral nucleocapsid		
15654	_		_	Sm gene, Sm family protein			8		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os08g0151400	LOC_Os08g05530.1				GO:0005829 - cytosol, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005681 - spliceosomal complex	TO:0000175 - bacterial blight disease resistance, TO:0000168 - abiotic stress trait	
15655	_		_	Sm gene, Sm family protein			8	LOC_Os08g05850 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Other						GO:0005829 - cytosol, GO:0006397 - mRNA processing		
15656	_		_	Sm gene, Sm family protein			8			Os08g0177700	LOC_Os08g08040.1						
15657	_		_	Sm gene, Sm family protein			11		 Tolerance and resistance - Disease resistance,  Other	Os11g0657300	LOC_Os11g43620.2, LOC_Os11g43620.1				GO:0005634 - nucleus, GO:0006396 - RNA processing, GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex	TO:0000439 - fungal disease resistance	
15658	ASL1	OsASL1, OsASL1.1, OsASL1.2, OsAL1, red1	ARGININOSUCCINATE LYASE 1	argininosuccinate lyase 1, root elongation defect 1	ARGININOSUCCINATE LYASE 1	osred1, osasl1.1, osasl1.2	3	ASL1 has two distinct transcripts, ASL1.1 and ASL1.2, which result from different transcription start sites.	 Biochemical character,  Vegetative organ - Root	Os03g0305500	LOC_Os03g19280.1, LOC_Os03g19275.1				GO:0009570 - chloroplast stroma, GO:0048364 - root development, GO:0042450 - arginine biosynthetic process via ornithine, GO:0004056 - argininosuccinate lyase activity	TO:0000656 - root development trait, TO:0000227 - root length	PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage 
15659	ALBA1	OsAlba1, Alba1	ACETYLATION LOWERS BINDING AFFINITY 1	acetylation lowers binding affinity protein 1, acetylation lowers binding affinity 1, Alba family protein 1			1	a dehydration-responsive nuclear protein.	 Tolerance and resistance - Stress tolerance	Os01g0173100 	LOC_Os01g07810.3, LOC_Os01g07810.2, LOC_Os01g07810.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
15660	_	OsREX1-S	_	required for excision 1-S			7		 Tolerance and resistance - Stress tolerance,  Other	Os07g0573600 	LOC_Os07g38600.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006289 - nucleotide-excision repair, GO:0000439 - core TFIIH complex	TO:0000601 - UV-B light sensitivity, TO:0000168 - abiotic stress trait	
15661	_	OsMOGS	_	mannosyl-oligosaccharide glucosidase		osmogs	1		 Biochemical character,  Vegetative organ - Root	Os01g0921200	LOC_Os01g69210.2, LOC_Os01g69210.1				GO:0009311 - oligosaccharide metabolic process, GO:0004573 - mannosyl-oligosaccharide glucosidase activity	TO:0002672 - auxin content, TO:0000656 - root development trait	
15662	_	Chalk5	_	Pyrophosphate-energized vacuolar membrane proton pump			5	a vacuolar H+-translocating pyrophosphatase. LOC_Os05g06480. EC 3.6.1.1.	 Biochemical character,  Seed - Physiological traits	Os05g0156900	LOC_Os05g06480.1				GO:0004427 - inorganic diphosphatase activity, GO:0009678 - hydrogen-translocating pyrophosphatase activity, GO:0016020 - membrane, GO:0015992 - proton transport	TO:0000266 - chalky endosperm	
15663	_	OsETOL1, OsSTA97, ETOL1, STA97	_	ETHYLENE OVERPRODUCER 1-like gene 1		osetol1, osetol1-1, osetol1-2, etol1-1	3	GO:2000069: regulation of post-embryonic root development. LOC_Os03g18360. a mature anther-preferentially expressed gene.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0294700	LOC_Os03g18360.1				GO:0010364 - regulation of ethylene biosynthetic process, GO:0016036 - cellular response to phosphate starvation, GO:0008361 - regulation of cell size, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0017145 - stem cell division	TO:0000615 - abscisic acid sensitivity, TO:0000524 - submergence tolerance, TO:0000227 - root length, TO:0000276 - drought tolerance	PO:0009066 - anther 
15664	_	OsETOL2	_	ETHYLENE OVERPRODUCER 1-like gene 2			7			Os07g0178100	LOC_Os07g08120.2, LOC_Os07g08120.1				GO:0010364 - regulation of ethylene biosynthetic process		
15665	_	OsETOL3	_	ETHYLENE OVERPRODUCER 1-like gene 3			11			Os11g0585900	LOC_Os11g37520.1						
15666	_	OsACS1	_	acyl-CoA synthetase 1			3	Q0DV32.	 Biochemical character	Os03g0152400	LOC_Os03g05780.1				GO:0009695 - jasmonic acid biosynthetic process, GO:0016874 - ligase activity, GO:0005524 - ATP binding, GO:0004321 - fatty-acyl-CoA synthase activity		
15667	_	OsACS2	_	acyl-CoA synthetase 2, type 2 ACS		osacs2, osacs2-1, osacs2-2	10	Q336M7. a rate-limiting enzyme for ethylene biosynthesis.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0578950	LOC_Os10g42800.1				GO:0016874 - ligase activity, GO:0005524 - ATP binding	TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000476 - growth hormone content	
15668	_	OsACS3	_	acyl-CoA synthetase 3			8	Q6YYZ2.	 Biochemical character	Os08g0143300	LOC_Os08g04770.1				GO:0016874 - ligase activity, GO:0005524 - ATP binding		
15669	_	OsACS4, ACS4	_	acyl-CoA synthetase 4			3	Q10S72.	 Biochemical character	Os03g0132000	LOC_Os03g04000.1				GO:0009611 - response to wounding, GO:0005524 - ATP binding, GO:0009695 - jasmonic acid biosynthetic process, GO:0016874 - ligase activity		
15670	_	OsACS5, ACS5	_	acyl-CoA synthetase 5			1	Q7F1X5.	 Biochemical character	Os01g0901500	LOC_Os01g67530.1				GO:0005524 - ATP binding, GO:0004321 - fatty-acyl-CoA synthase activity, GO:0016874 - ligase activity, GO:0009695 - jasmonic acid biosynthetic process		
15671	_	OsACS6, ACS6	_	acyl-CoA synthetase 6			1	Q8RU95.	 Biochemical character	Os01g0901600	LOC_Os01g67540.1				GO:0016874 - ligase activity, GO:0005524 - ATP binding		
15672	_	OsACS7, ACS7	_	acyl-CoA synthetase 7			7	Q69RG7.	 Biochemical character	Os07g0280200	LOC_Os07g17970.2, LOC_Os07g17970.1				GO:0016874 - ligase activity, GO:0005524 - ATP binding		
15673	_	OsACS8	_	acyl-CoA synthetase 8			7	Q8GVF9.	 Biochemical character	Os07g0639100	LOC_Os07g44560.1				GO:0016874 - ligase activity, GO:0005524 - ATP binding		
15674	_	OsACS9, ACS9, 4CL4, OsACOS12, ACOS12	_	acyl-CoA synthetase 9, 4-hydroxycinnamate CoA ligase 4, fatty acyl-CoA synthetase 12		osacos12	4	Q7XXL2. LOC_Os04g24530. OsACOS12 in Li et al. 2016 and Ynag et al. 2017. an orthologue of Arabidopsis ACOS5 (acyl-CoA synthetase5).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0310800	LOC_Os04g24530.2, LOC_Os04g24530.1				GO:0080110 - sporopollenin biosynthetic process, GO:0005524 - ATP binding, GO:0016874 - ligase activity, GO:0009807 - lignan biosynthetic process, GO:0010584 - pollen exine formation, GO:0048653 - anther development, GO:0010208 - pollen wall assembly, GO:0012501 - programmed cell death, GO:0009555 - pollen development	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000437 - male sterility, TO:0000602 - total fat content	PO:0001004 - anther development stage , PO:0025313 - tapetum , PO:0020048 - microspore , PO:0001007 - pollen development stage 
15675	_	OsOTU1	_	OUT like cysteine protease 1			2	an OsHIR1-interacting protein.		Os02g0168600	LOC_Os02g07210.4, LOC_Os02g07210.3, LOC_Os02g07210.2, LOC_Os02g07210.1						
15677	_	HAIKU2	_	receptor-like protein kinase HAIKU2			12	an OsHIR1-interacting protein.  a rice ortholog of Arabidopsis IKU2.		Os12g0632800	LOC_Os12g43640.1				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006979 - response to oxidative stress, GO:0009845 - seed germination, GO:0009960 - endosperm development, GO:0016021 - integral to membrane, GO:0046777 - protein amino acid autophosphorylation, GO:0070825 - micropyle		
15678	_	OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2	_	Phenylalanine ammonia-lyase 02			4	LOC_Os04g43760. AY224546. OsPAL5 in Tonnessen et al. 2014, Zhou et al. 2018, Xu et al. 2018. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0518100	LOC_Os04g43760.1, LOC_Os04g43760.2				GO:0005737 - cytoplasm, GO:0006559 - L-phenylalanine catabolic process, GO:0009800 - cinnamic acid biosynthetic process, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0006952 - defense response	TO:0000074 - blast disease, TO:0000179 - biotic stress trait	
15679	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM	_	Phenylalanine ammonia-lyase 03, Tyrosine Aminomutase 1		ostam	12	GO:0080167: response to karrikin. LOC_Os12g33610. OsPAL9 in Tonnessen et al. 2014.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0520200	LOC_Os12g33610.1				GO:0009800 - cinnamic acid biosynthetic process, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0006559 - L-phenylalanine catabolic process, GO:0010224 - response to UV-B, GO:0046274 - lignin catabolic process, GO:0006979 - response to oxidative stress, GO:0006571 - tyrosine biosynthetic process, GO:0046244 - salicylic acid catabolic process, GO:0009555 - pollen development, GO:0009819 - drought recovery, GO:0005737 - cytoplasm	TO:0000074 - blast disease	
15680	_	OsPAL05, PAL05, OsPAL3, PAL5, PAL3	_	Phenylalanine ammonia-lyase 05			2	GO:0080167: response to karrikin. OsPAL3 in Tonnessen et al. 2014, Zhou et al. 2018, Chen et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0626600	LOC_Os02g41670.1				GO:0005829 - cytosol, GO:0006559 - L-phenylalanine catabolic process, GO:0006979 - response to oxidative stress, GO:0009800 - cinnamic acid biosynthetic process, GO:0045548 - phenylalanine ammonia-lyase activity	TO:0000074 - blast disease	
15681	_	OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7	_	Phenylalanine ammonia-lyase 07			4	OsPAL6 in Tonnessen et al. 2014, Zhou et al. 2018, Chen et al. 2018. similar to AtPAL1. PAL1 in Schmitz et al. 2015.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0518400	LOC_Os04g43800.1				GO:0005737 - cytoplasm, GO:0006559 - L-phenylalanine catabolic process, GO:0009800 - cinnamic acid biosynthetic process, GO:0009620 - response to fungus, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0046688 - response to copper ion, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0009809 - lignin biosynthetic process	TO:0000074 - blast disease, TO:0000021 - copper sensitivity	
15682	_	RA5B, OsEnS-99	_	rice allergen 5B, endosperm-specific gene 99	_		7	D42141. LOC_Os07g11410.		Os07g0214600	LOC_Os07g11410.1				GO:0005615 - extracellular space, GO:0004867 - serine-type endopeptidase inhibitor activity		
15684	_	RA16, OsEnS-100	_	rice allergen 16, endosperm-specific gene 100	_		7	D42142. Q01881. LOC_Os07g11510.		Os07g0215500	LOC_Os07g11510.1				GO:0010951 - negative regulation of endopeptidase activity, GO:0005615 - extracellular space, GO:0004867 - serine-type endopeptidase inhibitor activity		
15685	_	RIM2	_	RIM2 protein				AF121139. similar to En/Spm transposon protein.									
15686	17S rRNA	17S rRNA	17S rRNA	17S RIBOSOMAL RNA			2	M35382.									
15687	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA			2	M35385.									
15688	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA			2	M35386.									
15689	EIF1A1	OseIF1A-1	EUKARYOTIC INITIATION FACTOR 1A-1	translation initiation factor 1A-1, eukaryotic initiation factor 1A-1	EUKARYOTIC INITIATION FACTOR 1A-1		2	AJ563657.	 Biochemical character	Os02g0300700	LOC_Os02g19770.1				GO:0003743 - translation initiation factor activity		
15690	EIF1A2	OseIF1A-2	EUKARYOTIC INITIATION FACTOR 1A-2	translation initiation factor 1A-2, eukaryotic initiation factor 1A-2, initiation factor eIF-4C	EUKARYOTIC INITIATION FACTOR 1A-1		6	AJ563658. D50570. initiation factor eIF-4C in Hihara et al. 1997.	 Biochemical character	Os06g0342200	LOC_Os06g23440.1				GO:0005829 - cytosol, GO:0003743 - translation initiation factor activity		
15691	_	mEF-G	_	mitochondrial elongation factor G			3	AB040051, AB040052. Q9FE64.		Os03g0565500	LOC_Os03g36780.1				GO:0046686 - response to cadmium ion, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0003746 - translation elongation factor activity		
15692	_		_	Alpha-amylase	ALPHA-AMYLASE 3E			M62916.	 Biochemical character								
15693	EFTU	tufA, EF-Tu	ELONGATION FACTOR TU	chloroplast elongation factor EF-Tu, elongation factor Tu	ELONGATION FACTOR 1 GAMMA 2		2	AF145053. D23470.	 Biochemical character	Os02g0595700	LOC_Os02g38210.1				GO:0003746 - translation elongation factor activity, GO:0005622 - intracellular, GO:0003924 - GTPase activity, GO:0005525 - GTP binding		
15694	CMDH	OscMDH, cMDH, OsMDH, MDH	CYTOPLASMIC MALATE DEHYDROGENASE	cytoplasmic malate dehydrogenase, malate dehydrogenase	CYTOPLASMIC MALATE DEHYDROGENASE		10	AF353203. Q7XDC8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0478200	LOC_Os10g33800.3, LOC_Os10g33800.2, LOC_Os10g33800.1				GO:0030060 - L-malate dehydrogenase activity, GO:0044262 - cellular carbohydrate metabolic process, GO:0046686 - response to cadmium ion, GO:0010043 - response to zinc ion, GO:0048046 - apoplast, GO:0051775 - response to redox state, GO:0006099 - tricarboxylic acid cycle, GO:0006108 - malate metabolic process, GO:0009506 - plasmodesma, GO:0009651 - response to salt stress, GO:0009570 - chloroplast stroma, GO:0005774 - vacuolar membrane, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0005886 - plasma membrane		
15695	_	Osppc, OSPPC, Osppc2a, ppc2a	_	phosphoenolpyruvate carboxylase, phosphoenolpyruvate carboxylase 2a, PEPCase 2a			8	AY187619. LOC_Os08g27840. Osppc2a in Masumoto et al. 2010 and Yamamoto et al. 2014. cytosolic isozyme. C3-type isozyme. a plant-type Phosphoenolpyruvate Carboxylase.	 Biochemical character	Os08g0366000	LOC_Os08g27840.2, LOC_Os08g27840.1				GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0006099 - tricarboxylic acid cycle		
15696	_		_	carbonic anhydrase3					 Biochemical character						GO:0015977 - carbon utilization by fixation of carbon dioxide		
15697	_	DFR-1	_	dihydroflavonol-4-reductase 1			1	AF490387.	 Biochemical character,  Tolerance and resistance - Disease resistance						GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process	TO:0000074 - blast disease	
15698	_	OsBIHD1, BIHD1	_	BTH-induced homeodomain protein 1, BLH6-like 1, BEL1-LIKE HOMEODOMAIN6-like 1		osbihd1	3	a BELL homeodomain transcription factor. AY524972. a protein similar to AtBLH6 (BEL1-LIKE HOMEODOMAIN6). LOC_Os03g47740. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0680800	LOC_Os03g47740.3, LOC_Os03g47740.2, LOC_Os03g47740.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009873 - ethylene mediated signaling pathway, GO:0051607 - defense response to virus, GO:0050832 - defense response to fungus, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0002229 - defense response to oomycetes, GO:0043565 - sequence-specific DNA binding	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000420 - fertility related trait, TO:0002657 - oxidative stress, TO:0000429 - salt sensitivity, TO:0000112 - disease resistance, TO:0000148 - viral disease resistance, TO:0000043 - root anatomy and morphology trait, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height	
15699	_		_	sec14 like protein			1	U88068.		Os01g0926800	LOC_Os01g70210.1						
15700	_	Osjab1, jab1, CSN5, OsCSN5	_	JAB1 Transcriptional Coactivator, COP9 signalosome subunit 5			4	A Rice Homolog of the Human JAB1 Transcriptional Coactivator. AF072849. GO:2000082: regulation of L-ascorbic acid biosynthetic process.		Os04g0654700	LOC_Os04g56070.2, LOC_Os04g56070.1				GO:0010100 - negative regulation of photomorphogenesis, GO:0008180 - signalosome, GO:0005737 - cytoplasm, GO:0000338 - protein deneddylation, GO:0019784 - NEDD8-specific protease activity, GO:0031347 - regulation of defense response, GO:0010387 - signalosome assembly, GO:0045732 - positive regulation of protein catabolic process, GO:0010388 - cullin deneddylation, GO:0010971 - positive regulation of G2/M transition of mitotic cell cycle, GO:0008237 - metallopeptidase activity, GO:0010093 - specification of floral organ identity, GO:0009733 - response to auxin stimulus		
15704	_	GER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1	_	germin-like protein 4, german-like protein 1-2			1	AF032974. Q7F731. OsGLP1-1 in Das et al. 2019.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0284500	LOC_Os01g18170.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance	
15706	_	GER7, OsGLP3-7, GLP3-7	_	germin-like protein 7, german-like protein 3-7			3	AF072694. Q10BU2.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0804500	LOC_Os03g58980.1				GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
15707	_	GER8, OsGLP1-4, GLP1-4, OsGLP1-3, GLP1-3	_	germin-like protein 8, german-like protein 1-4			1	AF072695. Q942A8. GO:2000280: regulation of root development. OsGLP1-3 in Das et al. 2019.		Os01g0952000	LOC_Os01g72290.2, LOC_Os01g72290.1				GO:0048046 - apoplast, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0009505 - plant-type cell wall, GO:0009506 - plasmodesma, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity		
15709	18S rRNA	18S  rRNA	18S rRNA	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA				M26461.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
15710	RPS21	rps21	RIBOSOMAL PROTEIN S21	ribosomal protein small subunit 21, r-protein S21, ribosomal protein S21, Ribosomal protein YS25	RIBOSOMAL PROTEIN S20		3	D12633. D10969 (partial cds). P35687.	 Other	Os03g0345200	LOC_Os03g22460.2, LOC_Os03g22460.1				GO:0042274 - ribosomal small subunit biogenesis, GO:0003735 - structural constituent of ribosome, GO:0006414 - translational elongation, GO:0022627 - cytosolic small ribosomal subunit, GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)		
15711	RPL7A	OsRPL7A	RIBOSOMAL PROTEIN L7A	ribosomal protein L7A, r-protein L7A	RIBOSOMAL PROTEIN L7A		8	D12631. P35685.		Os08g0326400	LOC_Os08g23710.1				GO:0005774 - vacuolar membrane, GO:0022625 - cytosolic large ribosomal subunit, GO:0042254 - ribosome biogenesis		
15712	_	OsMGD, MGD	_	Monogalactosyldiacylglycerol synthase, MGDG synthase			2	AB112060 (indica). Q0DWQ1. LOC_Os02g55910.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0802700	LOC_Os02g55910.2, LOC_Os02g55910.1				GO:0045017 - glycerolipid biosynthetic process, GO:0030246 - carbohydrate binding, GO:0019374 - galactolipid metabolic process, GO:0009658 - chloroplast organization, GO:0030259 - lipid glycosylation, GO:0030912 - response to deep water, GO:0042594 - response to starvation, GO:0010044 - response to aluminum ion, GO:0006631 - fatty acid metabolic process, GO:0009247 - glycolipid biosynthetic process, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009416 - response to light stimulus, GO:0009535 - chloroplast thylakoid membrane, GO:0009651 - response to salt stress, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0016036 - cellular response to phosphate starvation, GO:0046509 - 1,2-diacylglycerol 3-beta-galactosyltransferase activity	TO:0000276 - drought tolerance, TO:0000286 - submergence sensitivity, TO:0000316 - photosynthetic ability, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity	
15713	_	HSP70, hsp70, OsHSP70, OsMed37_8, Med37_8	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD, heat-shock protein cognate 70, Mediator 37_8			11	X67711. D22613. D15987. LOC_Os11g47760.	 Tolerance and resistance - Stress tolerance	Os11g0703900	LOC_Os11g47760.6, LOC_Os11g47760.5, LOC_Os11g47760.4, LOC_Os11g47760.3, LOC_Os11g47760.2, LOC_Os11g47760.1				GO:0009941 - chloroplast envelope, GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0009408 - response to heat, GO:0046686 - response to cadmium ion	TO:0000259 - heat tolerance	
15714	_	mago, OsMAGO2, MAGO2	_	mago nashi, Mago protein, Mago nashi protein, rice mago nashi homolog, MAGO NASHI 2			12	AF338343. D40597. KF051008. P49030. exon junction complex (EJC) core subunit. OsMAGO2 in Gong et al. 2014.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0287200	LOC_Os12g18880.1				GO:0009908 - flower development, GO:0006950 - response to stress, GO:0005634 - nucleus	TO:0000622 - flower development trait, TO:0000215 - stamen anatomy and morphology trait, TO:0000164 - stress trait	
15715	EEF1B2	eEF-1beta2, EF-1beta2	EUKARYOTIC ELONGATION FACTOR 1-BETA2	elongation factor 1 beta2, translation elongation factor-1Beta subunit isoform 2	EUKARYOTIC ELONGATION FACTOR 1-BETA		3	D83726, D83727. Q40682.	 Biochemical character	Os03g0406200	LOC_Os03g29260.2	GR:0061372			GO:0003746 - translation elongation factor activity, GO:0005853 - eukaryotic translation elongation factor 1 complex		
15716	_	H2A	_	Histone H2A				M35379 (5' end).									
15717	_	H2B	_	Histone H2B													
15718	_	H4	_	Histone H4													
15719	_	H2B	_	Histone H2B			3	D10396.									
15720	_	H3	_	Histone H3				D10965.									
15721	_	H4	_	Histone H4			10	D10397. D15083.		Os10g0539500	LOC_Os10g39410.1				GO:0005730 - nucleolus, GO:0006334 - nucleosome assembly, GO:0005774 - vacuolar membrane, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0000786 - nucleosome, GO:0009579 - thylakoid, GO:0009507 - chloroplast, GO:0005829 - cytosol, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane		
15722	_		_	U2 small nuclear RNA-associated B antigen				D10958.							GO:0005886 - plasma membrane, GO:0000786 - nucleosome, GO:0003677 - DNA binding, GO:0005730 - nucleolus, GO:0005774 - vacuolar membrane, GO:0005829 - cytosol, GO:0006334 - nucleosome assembly, GO:0009414 - response to water deprivation, GO:0009506 - plasmodesma, GO:0009507 - chloroplast, GO:0009579 - thylakoid		
15723	EIF4D	eIF-4d, EIF4D, elF-4D	EUKARYOTIC INITIATION FACTOR 4D	eukaryotic initiation factor 4D, initiation factor eIF-4D	EUKARYOTIC INITIATION FACTOR 4D		12	D10399 (partial cds). 		Os12g0507200	LOC_Os12g32240.1				GO:0003746 - translation elongation factor activity, GO:0045905 - positive regulation of translational termination, GO:0008612 - peptidyl-lysine modification to hypusine, GO:0003743 - translation initiation factor activity, GO:0043022 - ribosome binding, GO:0045901 - positive regulation of translational elongation, GO:0006452 - translational frameshifting		
15724	_		_	Eukatyotic release factor			12	D10401 (partial cds). 		Os12g0540900	LOC_Os12g35570.3, LOC_Os12g35570.2, LOC_Os12g35570.1				GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0004830 - tryptophan-tRNA ligase activity, GO:0006436 - tryptophanyl-tRNA aminoacylation		
15725	_		_	ribosomal protein 117			2	D10404 (partial cds).		Os02g0814700	LOC_Os02g56960.1				GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0005730 - nucleolus		
15726	_		_	Ribosomal protein S12				D10405 (partial cds).									
15727	_		_	Ribosomal protein L41				D10406 (partial cds).									
15728	RPL35	OsRPL35	RIBOSOMAL PROTEIN L35	ribosomal protein L35, r-protein L35	RIBOSOMAL PROTEIN L35		2	D10407 (partial cds). 		Os02g0503400	LOC_Os02g30050.1				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
15729	_	osppdka, ppdka	_	Pyruvate orthophosphate dikinase, cytosolic Pyruvate orthophosphate dikinase, cytosolic PPDK			3	D10416. Q75KR1. AJ004965.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0432100	LOC_Os03g31750.3, LOC_Os03g31750.2, LOC_Os03g31750.1				GO:0009409 - response to cold, GO:0006090 - pyruvate metabolic process, GO:0005737 - cytoplasm, GO:0006970 - response to osmotic stress, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0050242 - pyruvate, phosphate dikinase activity, GO:0001666 - response to hypoxia, GO:0016301 - kinase activity, GO:0046872 - metal ion binding	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000286 - submergence sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
15730	_		_	Acyl carrier protein, acyl carrier protein 3			8	D10420. D15925. acyl carrier protein 3 in Sasaki et al. 1994.	 Biochemical character	Os08g0549300	LOC_Os08g43580.2, LOC_Os08g43580.1				GO:0009570 - chloroplast stroma, GO:0006633 - fatty acid biosynthetic process		
15731	_		_	cytochrome b5				D10954.	 Biochemical character						GO:0005886 - plasma membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0005774 - vacuolar membrane		
15732	_		_	F1-ATPase				D10422.	 Biochemical character								
15733	_		_	Aspartate aminotransferase				D10968.	 Biochemical character								
15734	_		_	Cysteine synthetase				D10957.	 Biochemical character								
15735	_		_	Cathepsin L				D10960.									
15736	_		_	S-adenosylmethionine synthetase				D10433 (partial cds).									
15737	_		_	Xenopus maternal G10 homolog, XELG10 homolog				D10437.									
15738	_	OsTCTP, TCTP, OsTCTPa, OsTCTPb	_	21 kDa polypeptide, translationally controlled tumor protein, TCTP homolog			11	LOC_Os11g43900. D10966. P35681. GO:0090333: regulation of stomatal closure. GO:0090406: pollen tube. a homolog of TCTPs (human, Drosophila and yeast).	 Tolerance and resistance - Stress tolerance	Os11g0660500	LOC_Os11g43900.2, LOC_Os11g43900.1				GO:0010252 - auxin homeostasis, GO:0008283 - cell proliferation, GO:0042742 - defense response to bacterium, GO:0009819 - drought recovery, GO:0031117 - positive regulation of microtubule depolymerization, GO:0001558 - regulation of cell growth, GO:0007346 - regulation of mitotic cell cycle, GO:0040014 - regulation of multicellular organism growth, GO:0009790 - embryonic development, GO:0046686 - response to cadmium ion, GO:0048768 - root hair cell tip growth, GO:0005794 - Golgi apparatus, GO:0048046 - apoplast, GO:0009507 - chloroplast, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0009579 - thylakoid, GO:0005774 - vacuolar membrane, GO:0046689 - response to mercury ion, GO:0009737 - response to abscisic acid stimulus, GO:0033194 - response to hydroperoxide, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0048527 - lateral root development, GO:0009860 - pollen tube growth	TO:0000482 - chemical stress sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content	
15739	GATA18 	OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b	GATA TRANSCRIPTION FACTOR 18	TIFY GENE 1A, TIFY-DOMAIN PROTEIN 1A, CCT domain-containing gene 13, CCT (CO, CO-LIKE and TOC1) domain protein 13, CCT domain protein 13, GATA transcription factor 18, GATA factor 18	GATA TRANSCRIPTION FACTOR 18		3	LOC_Os03g47970. LOC_Os03g47970.1 (OsGATA18a), LOC_Os03g47970.2 (OsGATA18b). Q10F25. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Tolerance and resistance - Stress tolerance,  Other	Os03g0684000	LOC_Os03g47970.2, LOC_Os03g47970.1				GO:0009414 - response to water deprivation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
15740	GATA19	OsTIFY1b, TIFY1B, OsCCT15, OsGATA19, OsGATA19a, OsGATA19b	GATA TRANSCRIPTION FACTOR 19	TIFY GENE 1B, TIFY-DOMAIN PROTEIN 1B, CCT domain-containing gene 15, CCT (CO, CO-LIKE and TOC1) domain protein 15, CCT domain protein 15, GATA transcription factor 19, GATA factor 19	GATA TRANSCRIPTION FACTOR 19		3	LOC_Os03g52450. LOC_Os03g52450.1 (OsGATA19a), LOC_Os03g52450.2 (OsGATA19b). Q0DNU1. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Tolerance and resistance - Stress tolerance,  Other	Os03g0734900	LOC_Os03g52450.2, LOC_Os03g52450.1				GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
15741	GATA17	OsTIFY2a, OsCCT04, OsGATA17, OsGATA17a, OsGATA17b	GATA TRANSCRIPTION FACTOR 17	TIFY GENE 2A, TIFY-DOMAIN PROTEIN 2A, CCT domain-containing gene 4, CCT (CO, CO-LIKE and TOC1) domain protein 4, CCT domain protein 4, GATA transcription factor 17, GATA factor 17	GATA TRANSCRIPTION FACTOR 17		2	LOC_Os02g05510. LOC_Os02g05510.1 (OsGATA17a) , LOC_Os02g05510.3 (OsGATA17b). Q6Z433. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0148500	LOC_Os02g05510.3, LOC_Os02g05510.1				GO:0009651 - response to salt stress, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
15742	GATA20	OsTIFY2b, TIFY2B, OsCCT24, OsGATA20	GATA TRANSCRIPTION FACTOR 20	TIFY GENE 2B, TIFY-DOMAIN PROTEIN 2B, CCT domain-containing gene 24, CCT (CO, CO-LIKE and TOC1) domain protein 24, CCT domain protein 24, GATA transcription factor 20, GATA factor 20	GATA TRANSCRIPTION FACTOR 20		6	LOC_Os06g48534. Q0DNU1. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Tolerance and resistance - Stress tolerance,  Other	Os06g0698900	LOC_Os06g48534.1				GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0003682 - chromatin binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
15743	RIM2-228	Rim2-228	TRANSPOSON CACTG ELEMENT RIM2-228	transposon CACTG element Rim2-228				AY090462.	 Other						GO:0032196 - transposition		
15744	RIM2-248	Rim2-248	TRANSPOSON CACTG ELEMENT RIM2-248	transposon CACTG element Rim2-248				AY090463.	 Other						GO:0032196 - transposition		
15745	RIM2-553	Rim2-553	TRANSPOSON CACTG ELEMENT RIM2-553	transposon CACTG element Rim2-553				AY090464.	 Other						GO:0032196 - transposition		
15746	_		_	RIM2 protein				AY090462. a TNP2/TNPD-like protein. a RIM2 protein in Rim2-228.									
15747	_		_	RIM2 protein				AY090463. a TNP2/TNPD-like protein. a RIM2 protein in Rim2-248.									
15748	_		_	RIM2 protein				AY090464. a TNP2/TNPD-like protein. a RIM2 protein in Rim2-553. putative transposase.									
15749	_	HRGP	_	hydroxyproline-rich glycoprotein				AU090537. HRGP is encoded by Gene 2 of Rim2 elements (Rim2-228, Rim2-248 and Rim2-553). 									
15750	_	OsBLE1	_	BLE1 protein, BL-enhanced gene 1			5	AB072977.		Os05g0122900	LOC_Os05g03150.1				GO:0009741 - response to brassinosteroid stimulus, GO:0005747 - mitochondrial respiratory chain complex I	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height	
15751	_		_	23 kDa polypeptide of photosystem II, 23 kDa protein of the oxygen-evolving complex of photosystem II, 23 kDa polypeptide of PSII				D49713.							GO:0015979 - photosynthesis, GO:0005509 - calcium ion binding, GO:0009654 - oxygen evolving complex, GO:0019898 - extrinsic to membrane	TO:0000075 - light sensitivity	
15752	_		_	precursor ferredoxin-NADP+ oxidoreductase, ferredoxin-NADP+ oxidoreductase			7	D87547. O23877.	 Biochemical character	Os07g0147900	LOC_Os07g05400.1				GO:0004324 - ferredoxin-NADP+ reductase activity, GO:0015979 - photosynthesis, GO:0009507 - chloroplast, GO:0005507 - copper ion binding		
15753	_	ARF, ARF1, OsARFA1b, ARFA1b	_	ADP-ribosylation factor, ADP-ribosylation factor 1, ADP-ribosylation factor A1b			5	D17760. BF889436. P51823. One of the two copies of the ARF gene in rice genome. LOC_Os05g41060. OsARFA1b in Muthamilarasan et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0489600	LOC_Os05g41060.1				GO:0050832 - defense response to fungus, GO:0009269 - response to desiccation, GO:0009409 - response to cold, GO:0005525 - GTP binding, GO:0016192 - vesicle-mediated transport, GO:0009651 - response to salt stress, GO:0007264 - small GTPase mediated signal transduction, GO:0006886 - intracellular protein transport, GO:0005794 - Golgi apparatus, GO:0006471 - protein amino acid ADP-ribosylation	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
15754	_	OsJAC1, JAC1	_	jacalin-related lectin 1		Osjac1-1, Osjac1-2	12	DQ243708. a mannose-binding jacalin-related lectin. an ortholog of wheat TaJA1. LOC_Os12g14440. Jasmonate-induced protein.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0247700	LOC_Os12g14440.1				GO:0009611 - response to wounding, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0046688 - response to copper ion, GO:0050832 - defense response to fungus, GO:0009826 - unidimensional cell growth, GO:0009753 - response to jasmonic acid stimulus	TO:0000207 - plant height, TO:0001007 - coleoptile length, TO:0000357 - growth and development trait, TO:0000021 - copper sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000112 - disease resistance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
15755	_		_	Glyoxysomal Malate Dehydrogenase, lactate/malate dehydrogenase 1			12	LOC_Os12g43630. D85763. Q42972.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0632700	LOC_Os12g43630.3, LOC_Os12g43630.2, LOC_Os12g43630.1				GO:0009635 - response to herbicide, GO:0006097 - glyoxylate cycle, GO:0006099 - tricarboxylic acid cycle, GO:0006108 - malate metabolic process, GO:0031998 - regulation of fatty acid beta-oxidation, GO:0030060 - L-malate dehydrogenase activity, GO:0009514 - glyoxysome, GO:0009507 - chloroplast, GO:0080093 - regulation of photorespiration	TO:0000058 - herbicide sensitivity	
15756	LDH	LDH	LACTATE DEHYDROGENASE	lactate dehydrogenase	LACTATE DEHYDROGENASE		2	D13817.	 Biochemical character	Os02g0105400	LOC_Os02g01510.1				GO:0004459 - L-lactate dehydrogenase activity, GO:0005737 - cytoplasm, GO:0006096 - glycolysis, GO:0044262 - cellular carbohydrate metabolic process		
15757	_	GPAT, OsGPAT	_	glycerol-3-phosphate acyltransferase, plastidial GPAT			10	LOC_Os10g42720. AF155815. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os10g0577900	LOC_Os10g42720.1				GO:0009536 - plastid, GO:0016746 - transferase activity, transferring acyl groups, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0004366 - glycerol-3-phosphate O-acyltransferase activity, GO:0016024 - CDP-diacylglycerol biosynthetic process, GO:0009570 - chloroplast stroma		
15758	_	OsRING-1	_				2	a blast-inducible RING-H2 type zinc finger protein. AY579411.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0759400 	LOC_Os02g52210.2, LOC_Os02g52210.1				GO:0008270 - zinc ion binding	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000058 - herbicide sensitivity	
15759	_	HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1	_	glutamyl-tRNA reductase			10	LOC_Os10g35840. AB011416. A2Z928. P0C587.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0502400	LOC_Os10g35840.1				GO:0009507 - chloroplast, GO:0008883 - glutamyl-tRNA reductase activity, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0006979 - response to oxidative stress, GO:0050661 - NADP or NADPH binding, GO:0015995 - chlorophyll biosynthetic process, GO:0046686 - response to cadmium ion, GO:0009637 - response to blue light, GO:0010114 - response to red light	TO:0000159 - blue light sensitivity, TO:0000158 - red light sensitivity	
15760	_	RH3.2A	_	Histone H3.2A, H3.2-type H3 protein A			4	AY525328. Q0JCT1.	 Tolerance and resistance - Stress tolerance	Os04g0450800					GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
15761	_		_	histone H3			3	AF109910 (Oryza coarctata), Q71U98. Q0JCT1 (Oryza sativa japonica). D29713.		Os03g0390600	LOC_Os03g27310.2, LOC_Os03g27310.1				GO:0005634 - nucleus, GO:0006334 - nucleosome assembly, GO:0003677 - DNA binding, GO:0000786 - nucleosome		
15762	_	TBPOs-1, OsRpt5a, Rpt5a	_	rice homolog of HIV-1 Tat binding protein-1, homolog of human TBP-1, 19S regulatory particle ATPase subunit 5a, RP triple A-ATPase 5a			2	D17788. P46465. AU075370, C25970. AB037155. a 19S regulatory particle subunit from the rice 26S proteasome.	 Biochemical character	Os02g0803700	LOC_Os02g56000.2, LOC_Os02g56000.1	GR:0061409			GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0009553 - embryo sac development, GO:0005634 - nucleus, GO:0009555 - pollen development, GO:0010255 - glucose mediated signaling, GO:0000502 - proteasome complex, GO:0010498 - proteasomal protein catabolic process, GO:0017111 - nucleoside-triphosphatase activity, GO:0005886 - plasma membrane		
15763	_	TBPOs-2, OsRpt2a, Rpt2a	_	rice homolog of human 26S protease subunit 4, rice homolog of human 26S protease S4, 19S regulatory particle ATPase subunit 2a, RP triple A-ATPase 2a			7	D17789. P46466. GO:0060968: regulation of gene silencing. GO:0090351: seedling development. a 19S regulatory particle subunit from the rice 26S proteasome. D23487. D17789.	 Biochemical character	Os07g0691800	LOC_Os07g49150.1	GR:0061405			GO:0005634 - nucleus, GO:0048232 - male gamete generation, GO:0035266 - meristem growth, GO:0009933 - meristem structural organization, GO:0043248 - proteasome assembly, GO:0010311 - lateral root formation, GO:0009408 - response to heat, GO:0007292 - female gamete generation, GO:0009965 - leaf morphogenesis, GO:0017111 - nucleoside-triphosphatase activity, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0051788 - response to misfolded protein, GO:0048829 - root cap development, GO:0010078 - maintenance of root meristem identity, GO:0000502 - proteasome complex, GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0005829 - cytosol		
15764	_	MAO	_	monoamine oxidase					 Biochemical character,  Tolerance and resistance - Disease resistance							TO:0000074 - blast disease, TO:0000075 - light sensitivity	
15765	DYE1	cab, cab-n8, Lhca4, OsLhca4	DELAYED YELLOWING1	chlorophyll a/b binding protein, light-harvesting chlorophyll a/b binding protein, cab gene from Norin 8, delayed yellowing 1	dye1, dye1-1, dye1-2		8	LOC_Os08g33820. AY445626. a subunit of LHCI (light-harvesting complex I). GO:0080167: response to karrikin.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os08g0435900	LOC_Os08g33820.1				GO:0010287 - plastoglobule, GO:0009941 - chloroplast envelope, GO:0009765 - photosynthesis, light harvesting, GO:0009534 - chloroplast thylakoid, GO:0009522 - photosystem I, GO:0046872 - metal ion binding	TO:0000326 - leaf color, TO:0002664 - leaf yellowing tolerance, TO:0000495 - chlorophyll content	
15766	_	OsTVLP1	_				3	DQ237917. similar to TGF-b receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins.	 Tolerance and resistance - Disease resistance	Os03g0715500	LOC_Os03g50740.3, LOC_Os03g50740.2, LOC_Os03g50740.1				GO:0009506 - plasmodesma, GO:0006886 - intracellular protein transport, GO:0016192 - vesicle-mediated transport, GO:0005083 - small GTPase regulator activity	TO:0000074 - blast disease	
15767	_	U1-70K	_	U1 snRNP 70K, U1-snRNP-specific 70K protein, U1 small nuclear ribonucleoprotein 70K			10	DQ377062, DQ377063, DQ377064.		Os10g0115600	LOC_Os10g02630.1				GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
15768	TRN3	Tnr3	TRANSPOSON TRN3	transposable element in rice no.3, transposon Tnr3			5	D63711. En/Spm transposable element family.	 Other						GO:0032196 - transposition		
15769	28S rRNA	28S rRNA	28S rRNA	28S ribosomal RNA				M82048, M82049, M82050, M82051, M82052.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
15770	18S rRNA	18S rRNA	18S rRNA	18S ribosomal RNA				M82424, M82425, M82426, M82427, M82428, M82429, M82430.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
15771	_	PIGF, PIG-F, OsPIG-F	_	phosphatidylinositol-glycan biosynthesis protein class F			3	DQ838016.		Os03g0129000	LOC_Os03g03690.3, LOC_Os03g03690.2, LOC_Os03g03690.1				GO:0008168 - methyltransferase activity, GO:0006506 - GPI anchor biosynthetic process, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane	TO:0000401 - plant growth hormone sensitivity, TO:0000166 - gibberellic acid sensitivity	
15772	CSN6	OsCSN6	COP9 SIGNALOSOME SUBUNIT 6	Mov34 homolog, COP9 signalosome subunit 6	COP9 SIGNALOSOME SUBUNIT 6		8	AF072848. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance	Os08g0500000	LOC_Os08g39070.1				GO:0000338 - protein deneddylation, GO:0008180 - signalosome	TO:0000465 - mineral and ion content related trait, TO:0000495 - chlorophyll content, TO:0000224 - iron sensitivity	
15774	RPS19	rps19	RIBOSOMAL PROTEIN S19	ribosomal protein S19	RIBOSOMAL PROTEIN S19		Pt	AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: Nip222(cultivar Nipponbare), AY522331 (isolate PA64S). M22826. JN861109, JN861110: AER12859 (Indica Group chloroplast genome). GU592207: ADD62863 (Japonica chloroplast comlete genome). AP006728 (Oryza nivara chloroplast genome).	 Other						GO:0015935 - small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast, GO:0019843 - rRNA binding, GO:0006412 - translation		
15775	SRT	Srt	SLENDER-GLUME RELATED TRANSPOSABLE ELEMENT	slender-glume related transposable element			7	AB072932.	 Other						GO:0032196 - transposition		
15776	_	H3	_	H3 histone, Histone 3			6	U25664. A2Y533. Q2RAD9. M15664.	 Other	Os06g0160001					GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0006334 - nucleosome assembly		
15777	_	OsBIDK1	_	benzothiadiazole-inducible Diacylglycerol Kinase 1, BTH-inducible Diacylglycerol Kinase 1			4	DQ237915.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0634700	LOC_Os04g54200.2, LOC_Os04g54200.1				GO:0003951 - NAD+ kinase activity, GO:0004143 - diacylglycerol kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	TO:0000482 - chemical stress sensitivity, TO:0000074 - blast disease	
15778	_	OsRBP, OsDRB1b, DRB1b	_	dsRNA binding protein RBP, RNA binding protein, dsRNA-binding protein 1b			12	LOC_Os12g01916. DQ009988. Q0IQN6. GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Biochemical character	Os12g0109900	LOC_Os12g01916.1				GO:0016075 - rRNA catabolic process, GO:0031054 - pre-microRNA processing, GO:0031053 - primary microRNA processing, GO:0030422 - production of siRNA involved in RNA interference, GO:0004525 - ribonuclease III activity, GO:0003725 - double-stranded RNA binding		
15779	_		_	avenin-like protein, B-type avenin-like protein				EU096551.							GO:0045735 - nutrient reservoir activity		
15780	_	OsF2KP1	_	fructose-6-phosphate-2-kinase/fructose-2, 6-bisphosphatase 1, F6P2K/F26BPase1			5	DQ012288.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0164100	LOC_Os05g07130.2, LOC_Os05g07130.1				GO:0005524 - ATP binding, GO:0003824 - catalytic activity, GO:0006003 - fructose 2,6-bisphosphate metabolic process	TO:0000328 - sucrose content, TO:0006001 - salt tolerance	
15781	_	OsF2KP2	_	fructose-6-phosphate-2-kinase/fructose-2, 6-bisphosphatase 2, F6P2K/F26BPase2			3	GO:2001070: starch binding.	 Biochemical character	Os03g0294200	LOC_Os03g18310.3, LOC_Os03g18310.2, LOC_Os03g18310.1				GO:0003873 - 6-phosphofructo-2-kinase activity, GO:0006000 - fructose metabolic process, GO:0005524 - ATP binding, GO:0006003 - fructose 2,6-bisphosphate metabolic process	TO:0000328 - sucrose content	
15782	_	OsUGlcAE1	_	UDP-glucuronic acid 4-epimerase 1			2	DQ333338.	 Biochemical character	Os03g0249500	LOC_Os03g14540.1				GO:0005975 - carbohydrate metabolic process, GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives		
15783	_	OsUGlcAE2	_	UDP-glucuronic acid 4-epimerase 2			8	DQ333337.	 Biochemical character	Os08g0526100	LOC_Os08g41440.1				GO:0005768 - endosome, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives, GO:0005975 - carbohydrate metabolic process, GO:0005802 - trans-Golgi network		
15784	_	OsUGlcAE3	_	UDP-glucuronic acid 4-epimerase 3			2	DQ333336.	 Biochemical character	Os02g0791500	LOC_Os02g54890.1				GO:0050662 - coenzyme binding, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives, GO:0005975 - carbohydrate metabolic process, GO:0044237 - cellular metabolic process		
15785	_	OsUGlcAE4	_	UDP-glucuronic acid 4-epimerase 4			9		 Biochemical character	Os09g0504000	LOC_Os09g32670.1				GO:0050662 - coenzyme binding, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives, GO:0044237 - cellular metabolic process, GO:0005975 - carbohydrate metabolic process		
15786	_	OsUGlcAE5, UGlcAE5, OsSTA172	_	UDP-glucuronic acid 4-epimerase 5			6	a mature anther-preferentially expressed gene. LOC_Os06g08810.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0187200	LOC_Os06g08810.1				GO:0005768 - endosome, GO:0005802 - trans-Golgi network, GO:0005975 - carbohydrate metabolic process, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives, GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding		PO:0009066 - anther 
15787	_	trnG(GCC), trnG	_	tRNA-Gly			3	X14039, M35993.									
15788	ACBP	ACBP	ACYL-COA-BINDING PROTEIN	acyl-CoA-binding protein	ACYL-COA-BINDING PROTEIN			AY121834.									
15789	_	HMGR II, Hmg2, HMGR2, HMGR 2, OsHMGR2	_	3-hydroxy-3-methylglutaryl coenzyme A reductase II, 3-hydroxy-3-methylglutaryl-CoA reductase 2			9	U95816, U43961. GO: 0060964: regulation of gene silencing by miRNA.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0492700	LOC_Os09g31970.1				GO:0015936 - coenzyme A metabolic process, GO:0016104 - triterpenoid biosynthetic process, GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity, GO:0050661 - NADP or NADPH binding, GO:0016021 - integral to membrane, GO:0043231 - intracellular membrane-bounded organelle, GO:0009408 - response to heat, GO:0042282 - hydroxymethylglutaryl-CoA reductase activity, GO:0016126 - sterol biosynthetic process, GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway	TO:0000621 - inflorescence development trait, TO:0000432 - temperature response trait	
15790	_	HMGR III, Hmg3, HMGR3, HMGR 3, OsHMGR3	_	3-hydroxy-3-methylglutaryl coenzyme A reductase III, 3-hydroxy-3-methylglutaryl-CoA reductase 3			8	AF110382. Q9XHL5. GO: 0060964: regulation of gene silencing by miRNA. AU101521, AU101522.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0512700	LOC_Os08g40180.1				GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway, GO:0050661 - NADP or NADPH binding, GO:0016021 - integral to membrane, GO:0042282 - hydroxymethylglutaryl-CoA reductase activity, GO:0016126 - sterol biosynthetic process, GO:0015936 - coenzyme A metabolic process, GO:0005789 - endoplasmic reticulum membrane, GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity, GO:0016104 - triterpenoid biosynthetic process	TO:0000432 - temperature response trait	
15791	_	OsCGT, CGT	_	C-glycosyltransferase			6	a 49-kDa family 1 glycosyltransferase. FM179712. LOC_Os06g18010. Os06g0288200 (in Ncbi and UniProt).	 Biochemical character	Os06g0288300	LOC_Os06g18010.1				GO:0016758 - transferase activity, transferring hexosyl groups	TO:0000290 - flavonoid content	
15792	_	Z100a	_	Z100a snoRNA, Z100a small nucleolar RNA			6	AJ320255. Location: 2nd intron of rpS20 gene.									
15793	_	Z100b	_	Z100b snoRNA, Z100b small nucleolar RNA			6	AJ320256.									
15794	_	Z100c	_	Z100c snoRNA, Z100c small nucleolar RNA			6	AJ307912.									
15795	_	Z100d	_	Z100d snoRNA, Z100d small nucleolar RNA			6	AJ307913.									
15796	_	Z101	_	Z101 snoRNA, Z101 small nucleolar RNA			1	AJ307914.									
15797	_	Z102	_	Z102 snoRNA, Z102 small nucleolar RNA			1	AJ307915.									
15798	_	Z103h	_	Z103h snoRNA, Z103h small nucleolar RNA			1	AJ307916.									
15799	_	Z103a	_	Z103a snoRNA, Z103a small nucleolar RNA			3	AJ307917. Location: 2nd intron of NADH dehydrogenase gene.									
15800	_	Z103b	_	Z103b snoRNA, Z103b small nucleolar RNA			3	AJ307918.									
15801	_	Z103c	_	Z103c snoRNA, Z103c small nucleolar RNA			3	AJ307919.									
15802	_	Z103d	_	Z103d snoRNA, Z103d small nucleolar RNA			3	AJ307920.									
15803	_	Z103e	_	Z103e snoRNA, Z103e small nucleolar RNA			1	AJ307921. Location: 2nd intron of rpL30 gene.									
15804	_	Z103f	_	Z103f snoRNA, Z103f small nucleolar RNA			1	AJ307922.									
15805	_	Z103g	_	Z103g snoRNA, Z103g small nucleolar RNA			1	AJ307923.									
15806	_	Z104a	_	Z104a snoRNA, Z104a small nucleolar RNA			3	AJ307924.									
15807	_	Z104b	_	Z104b snoRNA, Z104b small nucleolar RNA			3	AJ307925.									
15808	_	Z105	_	Z105 snoRNA, Z105 small nucleolar RNA			3	AJ307926.									
15809	_	Z106	_	Z106 snoRNA, Z106 small nucleolar RNA			3	AJ307927.									
15810	_	Z107	_	Z107 snoRNA, Z107 small nucleolar RNA			2	AJ307928.									
15811	_	Z108	_	Z108 snoRNA, Z108 small nucleolar RNA			2	AJ307929.									
15812	_	Z109	_	Z109 snoRNA, Z109 small nucleolar RNA			2	AJ307930.									
15813	_	Z110	_	Z110 snoRNA, Z110 small nucleolar RNA			2	AJ307931.									
15814	_	Z111	_	Z111 snoRNA, Z111 small nucleolar RNA			2	AJ307932.									
15815	_	Z112	_	Z112 snoRNA, Z112 small nucleolar RNA			2	AJ320263.									
15816	_	Z113	_	Z113 snoRNA, Z113 small nucleolar RNA			2	AJ320264.									
15817	_	Z114a	_	Z114a snoRNA, Z114a small nucleolar RNA			2	AJ315478.									
15818	_	Z114b	_	Z114b snoRNA, Z114b small nucleolar RNA			2	AJ315479.									
15819	_	OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1	_	protein phosphatase 2C6, protein phosphatase 2C 6, protein phosphatase 10, OsABI-LIKE1, ABI-LIKE1, ABI-LIKE 1		osabil1	1	Q0JLP9.	 Tolerance and resistance - Stress tolerance	Os01g0583100	LOC_Os01g40094.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0009737 - response to abscisic acid stimulus	TO:0000164 - stress trait, TO:0000615 - abscisic acid sensitivity	
15820	NAC104	OMTN6, ONAC104	NAC DOMAIN-CONTAINING PROTEIN 104	NAC domain-containing protein 104, NAC domain-containing protein 104, miR164-targeted NAC6, Oryza miR164-targeted NAC6	NAC DOMAIN-CONTAINING PROTEIN 104		8	LOC_Os08g10080.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0200600	LOC_Os08g10080.1				GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
15821	_	OMT7	_	Oryza miR164-targeted gene 7			3	Q10E49.	 Biochemical character	Os03g0708100	LOC_Os03g50040.2, LOC_Os03g50040.1				GO:0031418 - L-ascorbic acid binding, GO:0006631 - fatty acid metabolic process, GO:0046872 - metal ion binding, GO:0048244 - phytanoyl-CoA dioxygenase activity		
15822	_	OMT8	_	Oryza miR164-targeted gene 8			5	Q65WW7. LOC_Os05g39650. This is one of the four genes within the candidate gene region on chromosome 5 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Biochemical character	Os05g0473900	LOC_Os05g39650.1				GO:0006631 - fatty acid metabolic process, GO:0046872 - metal ion binding, GO:0048244 - phytanoyl-CoA dioxygenase activity, GO:0005886 - plasma membrane, GO:0031418 - L-ascorbic acid binding		
15823	ONAC122	NAC122	NAC DOMAIN-CONTAINING PROTEIN 122	NAC domain-containing protein 122	NAC DOMAIN-CONTAINING PROTEIN 122				 Tolerance and resistance - Disease resistance,  Other							TO:0000074 - blast disease	
15824	ONAC131	NAC131	NAC DOMAIN-CONTAINING PROTEIN 131	NAC domain-containing protein 131	NAC DOMAIN-CONTAINING PROTEIN 131				 Tolerance and resistance - Disease resistance,  Other							TO:0000074 - blast disease	
15825	IREN		IMMUNE RELATED ENDONUCLEASE	immune related endonuclease	IMMUNE RELATED ENDONUCLEASE		10	a Ca2+-dependent nuclease. IREN directly participates in DNA fragmentation during hypersensitive response cell death.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0203000	LOC_Os10g13550.3, LOC_Os10g13550.2, LOC_Os10g13550.1				GO:0004527 - exonuclease activity, GO:0005509 - calcium ion binding, GO:0005634 - nucleus, GO:0009268 - response to pH, GO:0004519 - endonuclease activity, GO:0010043 - response to zinc ion, GO:0009409 - response to cold, GO:0009626 - plant-type hypersensitive response, GO:0006308 - DNA catabolic process	TO:0000112 - disease resistance	
15826	NAC16	ONAC016, ONAC16	NAC DOMAIN-CONTAINING PROTEIN 16	NAC domain-containing protein 016, NAC domain-containing protein 16	NAC DOMAIN-CONTAINING PROTEIN 16		1	LOC_Os01g01430.	 Other	Os01g0104200	LOC_Os01g01430.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15827	NAC20	ONAC020, ONAC20	NAC DOMAIN-CONTAINING PROTEIN 20	NAC domain-containing protein 020, NAC domain-containing protein 20	NAC DOMAIN-CONTAINING PROTEIN 20		1	LOC_Os01g01470.	 Other	Os01g0104500	LOC_Os01g01470.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15828	NAC30	ONAC030, ONAC30	NAC DOMAIN-CONTAINING PROTEIN 30	NAC domain-containing protein 030, NAC domain-containing protein 30	NAC DOMAIN-CONTAINING PROTEIN 30		1	LOC_Os01g23710.		Os01g0339500	LOC_Os01g23710.1						
15829	NAC33	ONAC033, ONAC33	NAC DOMAIN-CONTAINING PROTEIN 33	NAC domain-containing protein 033, NAC domain-containing protein 33	NAC DOMAIN-CONTAINING PROTEIN 33		1	LOC_Os01g28050.		Os01g0378400	LOC_Os01g28050.1						
15830	NAC34	ONAC034, ONAC34	NAC DOMAIN-CONTAINING PROTEIN 34	NAC domain-containing protein 034, NAC domain-containing protein 34	NAC DOMAIN-CONTAINING PROTEIN 34		1	LOC_Os01g48460 (not found in MSU Rice Genome Annotation Project Release 7 data).									
15831	NAC35	ONAC035, ONAC35	NAC DOMAIN-CONTAINING PROTEIN 35	NAC domain-containing protein 035, NAC domain-containing protein 35	NAC DOMAIN-CONTAINING PROTEIN 35		1	LOC_Os01g59640.		Os01g0811500	LOC_Os01g59640.1						
15832	NAC38	ONAC038, ONAC38	NAC DOMAIN-CONTAINING PROTEIN 38	NAC domain-containing protein 038, NAC domain-containing protein 38	NAC DOMAIN-CONTAINING PROTEIN 38		1	LOC_Os01g71790.	 Other	Os01g0946200	LOC_Os01g71790.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15833	NAC43	ONAC043, ONAC43	NAC DOMAIN-CONTAINING PROTEIN 43	NAC domain-containing protein 043, NAC domain-containing protein 43	NAC DOMAIN-CONTAINING PROTEIN 43		2	LOC_Os02g06950.	 Other	Os02g0165400	LOC_Os02g06950.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15834	NAC44	ONAC044, ONAC44	NAC DOMAIN-CONTAINING PROTEIN 44	NAC domain-containing protein 044, NAC domain-containing protein 44	NAC DOMAIN-CONTAINING PROTEIN 44		2	LOC_Os02g18460.	 Other	Os02g0285900	LOC_Os02g18460.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15835	NAC46	ONAC046, ONAC46	NAC DOMAIN-CONTAINING PROTEIN 46	NAC domain-containing protein 046, NAC domain-containing protein 46	NAC DOMAIN-CONTAINING PROTEIN 46		2	LOC_Os02g18470.		Os02g0286000	LOC_Os02g18470.1						
15836	NAC50	ONAC050, ONAC50	NAC DOMAIN-CONTAINING PROTEIN 50	NAC domain-containing protein 050, NAC domain-containing protein 50	NAC DOMAIN-CONTAINING PROTEIN 50		2	LOC_Os02g38130.	 Other	Os02g0594800	LOC_Os02g38130.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15837	NAC51	ONAC051, ONAC51	NAC DOMAIN-CONTAINING PROTEIN 51	NAC domain-containing protein 051, NAC domain-containing protein 51	NAC DOMAIN-CONTAINING PROTEIN 51		2	LOC_Os02g41450.	 Other	Os02g0623300	LOC_Os02g41450.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15838	NAC52	ONAC052, ONAC52	NAC DOMAIN-CONTAINING PROTEIN 52	NAC domain-containing protein 052, NAC domain-containing protein 52	NAC DOMAIN-CONTAINING PROTEIN 52		2	LOC_Os02g42970.	 Other	Os02g0643600	LOC_Os02g42970.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15839	NAC53	ONAC053, ONAC53	NAC DOMAIN-CONTAINING PROTEIN 53	NAC domain-containing protein 053, NAC domain-containing protein 53	NAC DOMAIN-CONTAINING PROTEIN 53		2	LOC_Os02g51120 (not found in MSU Rice Genome Annotation Project Release 7 data).									
15840	NAC56	ONAC056, ONAC56, OsSWN5	NAC DOMAIN-CONTAINING PROTEIN 56	NAC domain-containing protein 056, NAC domain-containing protein 56, secondary wall NAC transcription factor 5, secondary wall-associated NAC 5, SECONDARY WALL NAC DOMAIN PROTEIN 5	NAC DOMAIN-CONTAINING PROTEIN 56		3	JN634074. LOC_Os03g03540. Os03g0127200 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Stress tolerance,  Other		LOC_Os03g03540				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15841	NAC57	ONAC057, ONAC57	NAC DOMAIN-CONTAINING PROTEIN 57	NAC domain-containing protein 057, NAC domain-containing protein 57	NAC DOMAIN-CONTAINING PROTEIN 57		3	LOC_Os03g12120.	 Other	Os03g0221300	LOC_Os03g12120.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15842	NAC64	ONAC064, ONAC64	NAC DOMAIN-CONTAINING PROTEIN 64	NAC domain-containing protein 064, NAC domain-containing protein 64	NAC DOMAIN-CONTAINING PROTEIN 64		3	LOC_Os03g39050.	 Other	Os03g0587700	LOC_Os03g39050.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15843	NAC69	ONAC069, ONAC69	NAC DOMAIN-CONTAINING PROTEIN 69	NAC domain-containing protein 069, NAC domain-containing protein 69	NAC DOMAIN-CONTAINING PROTEIN 69		3	LOC_Os03g39100.	 Other	Os03g0588000	LOC_Os03g39100.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15844	NAC71	ONAC071, ONAC71	NAC DOMAIN-CONTAINING PROTEIN 71	NAC domain-containing protein 071, NAC domain-containing protein 71	NAC DOMAIN-CONTAINING PROTEIN 71		3	LOC_Os03g59730.	 Other	Os03g0811850	LOC_Os03g59730.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15845	NAC76	ONAC076, ONAC76	NAC DOMAIN-CONTAINING PROTEIN 76	NAC domain-containing protein 076, NAC domain-containing protein 76	NAC DOMAIN-CONTAINING PROTEIN 76		3	LOC_Os03g61249.	 Other		LOC_Os03g61249				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15846	NAC77	ONAC077, ONAC77	NAC DOMAIN-CONTAINING PROTEIN 77	NAC domain-containing protein 077, NAC domain-containing protein 77	NAC DOMAIN-CONTAINING PROTEIN 77		3	LOC_Os03g61319.	 Other		LOC_Os03g61319				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15847	NAC78	ONAC078, ONAC78	NAC DOMAIN-CONTAINING PROTEIN 78	NAC domain-containing protein 078, NAC domain-containing protein 78	NAC DOMAIN-CONTAINING PROTEIN 78		3	LOC_Os03g62470.	 Other		LOC_Os03g62470				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15848	NAC79	ONAC079, ONAC79	NAC DOMAIN-CONTAINING PROTEIN 79	NAC domain-containing protein 079, NAC domain-containing protein 79	NAC DOMAIN-CONTAINING PROTEIN 79		4	LOC_Os04g35660.	 Other	Os04g0437000	LOC_Os04g35660.1				GO:0043067 - regulation of programmed cell death, GO:0010089 - xylem development, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048367 - shoot development		
15849	NAC80	ONAC080, ONAC80	NAC DOMAIN-CONTAINING PROTEIN 80	NAC domain-containing protein 080, NAC domain-containing protein 80	NAC DOMAIN-CONTAINING PROTEIN 80		4	LOC_Os04g39960.	 Other	Os04g0475400	LOC_Os04g39960.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15850	NAC83	ONAC083, ONAC83	NAC DOMAIN-CONTAINING PROTEIN 83	NAC domain-containing protein 083, NAC domain-containing protein 83	NAC DOMAIN-CONTAINING PROTEIN 83		4	LOC_Os04g52810.	 Other	Os04g0619000	LOC_Os04g52810.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15851	NAC84	ONAC084, ONAC84	NAC DOMAIN-CONTAINING PROTEIN 84	NAC domain-containing protein 084, NAC domain-containing protein 84	NAC DOMAIN-CONTAINING PROTEIN 84		4	LOC_Os04g59470.	 Other	Os04g0691300	LOC_Os04g59470.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15852	NAC85	ONAC085, ONAC85	NAC DOMAIN-CONTAINING PROTEIN 85	NAC domain-containing protein 085, NAC domain-containing protein 85	NAC DOMAIN-CONTAINING PROTEIN 85		5	LOC_Os05g10620.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os05g0194500	LOC_Os05g10620.3, LOC_Os05g10620.2, LOC_Os05g10620.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009314 - response to radiation, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance, TO:0000161 - radiation response trait, TO:0000020 - black streak dwarf virus resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
15853	NAC86	ONAC086, ONAC86	NAC DOMAIN-CONTAINING PROTEIN 86	NAC domain-containing protein 086, NAC domain-containing protein 86	NAC DOMAIN-CONTAINING PROTEIN 86		5	LOC_Os05g25960.		Os05g0325300	LOC_Os05g25960.1						
15854	NAC87	ONAC087, ONAC87	NAC DOMAIN-CONTAINING PROTEIN 87	NAC domain-containing protein 087, NAC domain-containing protein 87	NAC DOMAIN-CONTAINING PROTEIN 87		5	LOC_Os05g34600.	 Other	Os05g0418800	LOC_Os05g34600.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15855	NAC88	ONAC088, ONAC88	NAC DOMAIN-CONTAINING PROTEIN 88	NAC domain-containing protein 088, NAC domain-containing protein 88	NAC DOMAIN-CONTAINING PROTEIN 88		5	LOC_Os05g34830.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0421600	LOC_Os05g34830.3, LOC_Os05g34830.2, LOC_Os05g34830.1				GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0006001 - salt tolerance	
15856	NAC89	ONAC089, ONAC89	NAC DOMAIN-CONTAINING PROTEIN 89	NAC domain-containing protein 089, NAC domain-containing protein 89	NAC DOMAIN-CONTAINING PROTEIN 89		5	LOC_Os05g43960.		Os05g0515800	LOC_Os05g43960.1						
15857	NAC91	ONAC091, ONAC91	NAC DOMAIN-CONTAINING PROTEIN 91	NAC domain-containing protein 091, NAC domain-containing protein 91	NAC DOMAIN-CONTAINING PROTEIN 91		6	LOC_Os06g15690 (not found in MSU Rice Genome Annotation Project Release 7 data). NAM domain protein. AJ575245.	 Seed,  Other	Os06g0267500					GO:0003677 - DNA binding, GO:0000077 - DNA damage checkpoint, GO:0010332 - response to gamma radiation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0040020 - regulation of meiosis	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15858	NAC94	ONAC094, ONAC94	NAC DOMAIN-CONTAINING PROTEIN 94	NAC domain-containing protein 094, NAC domain-containing protein 94	NAC DOMAIN-CONTAINING PROTEIN 94		6	LOC_Os06g36480.	 Other	Os06g0560300	LOC_Os06g36480.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15859	NAC95	ONAC095, ONAC95	NAC DOMAIN-CONTAINING PROTEIN 95	NAC domain-containing protein 095, NAC domain-containing protein 95	NAC DOMAIN-CONTAINING PROTEIN 95		6	LOC_Os06g51070.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0726300	LOC_Os06g51070.1				GO:0009965 - leaf morphogenesis, GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010200 - response to chitin, GO:0045792 - negative regulation of cell size, GO:0048281 - inflorescence morphogenesis, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
15860	NAC97	ONAC097, ONAC97	NAC DOMAIN-CONTAINING PROTEIN 97	NAC domain-containing protein 097, NAC domain-containing protein 97	NAC DOMAIN-CONTAINING PROTEIN 97		7	LOC_Os07g09740.		Os07g0195600	LOC_Os07g09740.1						
15861	NAC98	ONAC098, ONAC98	NAC DOMAIN-CONTAINING PROTEIN 98	NAC domain-containing protein 098, NAC domain-containing protein 98	NAC DOMAIN-CONTAINING PROTEIN 98		7	LOC_Os07g09830.		Os07g0196500	LOC_Os07g09830.1						
15862	NAC99	ONAC099, ONAC99	NAC DOMAIN-CONTAINING PROTEIN 99	NAC domain-containing protein 099, NAC domain-containing protein 99	NAC DOMAIN-CONTAINING PROTEIN 99		7	LOC_Os07g09860.		Os07g0196800	LOC_Os07g09860.1						
15863	NAC100	ONAC100	NAC DOMAIN-CONTAINING PROTEIN 100	NAC domain-containing protein 100	NAC DOMAIN-CONTAINING PROTEIN 100		7	LOC_Os07g13920.		Os07g0242800	LOC_Os07g13920.1						
15864	NAC101	ONAC101	NAC DOMAIN-CONTAINING PROTEIN 101	NAC domain-containing protein 101	NAC DOMAIN-CONTAINING PROTEIN 101		7	LOC_Os07g17180.	 Other	Os07g0272700	LOC_Os07g17180.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15865	NAC102	ONAC102	NAC DOMAIN-CONTAINING PROTEIN 102	NAC domain-containing protein 102	NAC DOMAIN-CONTAINING PROTEIN 102		7	LOC_Os07g27340.		Os07g0457100	LOC_Os07g27340.1						
15866	NAC103	ONAC103, OsNAC18, NAC18	NAC DOMAIN-CONTAINING PROTEIN 103	NAC domain-containing protein 103, NAC domain-containing protein 18	NAC DOMAIN-CONTAINING PROTEIN 103		7	LOC_Os07g48450. OsNAC18 in Wang et al. 2016.	 Tolerance and resistance - Disease resistance,  Other	Os07g0683200	LOC_Os07g48450.3, LOC_Os07g48450.2, LOC_Os07g48450.1				GO:0009737 - response to abscisic acid stimulus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051607 - defense response to virus	TO:0000020 - black streak dwarf virus resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000148 - viral disease resistance, TO:0000615 - abscisic acid sensitivity	
15867	NAC105	ONAC105	NAC DOMAIN-CONTAINING PROTEIN 105	NAC domain-containing protein 105	NAC DOMAIN-CONTAINING PROTEIN 105		8	LOC_Os08g23880.		Os08g0327800	LOC_Os08g23880.1						
15868	NAC106	ONAC106	NAC DOMAIN-CONTAINING PROTEIN 106	NAC domain-containing protein 106	NAC DOMAIN-CONTAINING PROTEIN 106	onac106-1D	8	LOC_Os08g33670. a senescence-associated NAC (senNAC). GO:1900056: negative regulation of leaf senescence. GO:1901002: positive regulation of response to salt stress.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Other	Os08g0433500	LOC_Os08g33670.1				GO:0010150 - leaf senescence, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000567 - tiller angle, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
15869	NAC108	ONAC108	NAC DOMAIN-CONTAINING PROTEIN 108	NAC domain-containing protein 108	NAC DOMAIN-CONTAINING PROTEIN 108		9	LOC_Os09g24560.	 Other	Os09g0411900	LOC_Os09g24560.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15870	NAC109	ONAC109	NAC DOMAIN-CONTAINING PROTEIN 109	NAC domain-containing protein 109	NAC DOMAIN-CONTAINING PROTEIN 109		9	LOC_Os09g38000.		Os09g0552800	LOC_Os09g38000.1						
15871	NAC110	ONAC110	NAC DOMAIN-CONTAINING PROTEIN 110	NAC domain-containing protein 110	NAC DOMAIN-CONTAINING PROTEIN 110		9	LOC_Os09g38010.	 Other	Os09g0552900	LOC_Os09g38010.2, LOC_Os09g38010.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15872	NAC111	ONAC111	NAC DOMAIN-CONTAINING PROTEIN 111	NAC domain-containing protein 111	NAC DOMAIN-CONTAINING PROTEIN 111		10	LOC_Os10g09820.	 Other	Os10g0177000	LOC_Os10g09820.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15873	NAC112	ONAC112	NAC DOMAIN-CONTAINING PROTEIN 112	NAC domain-containing protein 112	NAC DOMAIN-CONTAINING PROTEIN 112		10	LOC_Os10g25620.	 Other	Os10g0395650	LOC_Os10g25620.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15874	NAC113	ONAC113	NAC DOMAIN-CONTAINING PROTEIN 113	NAC domain-containing protein 113	NAC DOMAIN-CONTAINING PROTEIN 113		10	LOC_Os10g25630.		Os10g0396000	LOC_Os10g25630.1						
15875	NAC114	ONAC114	NAC DOMAIN-CONTAINING PROTEIN 114	NAC domain-containing protein 114	NAC DOMAIN-CONTAINING PROTEIN 114		10	LOC_Os10g25640.	 Other	Os10g0396050	LOC_Os10g25640.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15876	NAC115	ONAC115	NAC DOMAIN-CONTAINING PROTEIN 115	NAC domain-containing protein 115	NAC DOMAIN-CONTAINING PROTEIN 115		10	LOC_Os10g26240.	 Other	Os10g0401550	LOC_Os10g26240.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15877	NAC116	ONAC116	NAC DOMAIN-CONTAINING PROTEIN 116	NAC domain-containing protein 116	NAC DOMAIN-CONTAINING PROTEIN 116		10	LOC_Os10g26250.			LOC_Os10g26250						
15878	NAC117	ONAC117	NAC DOMAIN-CONTAINING PROTEIN 117	NAC domain-containing protein 117	NAC DOMAIN-CONTAINING PROTEIN 117		10	LOC_Os10g26270.	 Other	Os10g0402100	LOC_Os10g26270.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15879	NAC118	ONAC118	NAC DOMAIN-CONTAINING PROTEIN 118	NAC domain-containing protein 118	NAC DOMAIN-CONTAINING PROTEIN 118		10	LOC_Os10g27360.	 Other	Os10g0413700	LOC_Os10g27360.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15880	NAC119	ONAC119	NAC DOMAIN-CONTAINING PROTEIN 119	NAC domain-containing protein 119	NAC DOMAIN-CONTAINING PROTEIN 119		10	LOC_Os10g27390.	 Other	Os10g0414000	LOC_Os10g27390.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15881	NAC120	ONAC120	NAC DOMAIN-CONTAINING PROTEIN 120	NAC domain-containing protein 120	NAC DOMAIN-CONTAINING PROTEIN 120		10	LOC_Os10g33760.	 Other	Os10g0477600	LOC_Os10g33760.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15882	NAC121	ONAC121	NAC DOMAIN-CONTAINING PROTEIN 121	NAC domain-containing protein 121	NAC DOMAIN-CONTAINING PROTEIN 121		10	LOC_Os10g42130.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os10g0571600	LOC_Os10g42130.1				GO:0003677 - DNA binding, GO:0051607 - defense response to virus, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000020 - black streak dwarf virus resistance, TO:0006001 - salt tolerance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000148 - viral disease resistance	
15883	NAC123	ONAC123, N77	NAC DOMAIN-CONTAINING PROTEIN 123	NAC domain-containing protein 123, NAC domain containing protein 77	NAC DOMAIN-CONTAINING PROTEIN 123		11	LOC_Os11g03310. N77 in Sharma et al. 2015. one of the predicted targets for Osa-miR820.	 Tolerance and resistance - Disease resistance,  Other	Os11g0127000	LOC_Os11g03310.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0051607 - defense response to virus	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
15884	NAC124	ONAC124	NAC DOMAIN-CONTAINING PROTEIN 124	NAC domain-containing protein 124	NAC DOMAIN-CONTAINING PROTEIN 124		11	LOC_Os11g04470.	 Other	Os11g0140500	LOC_Os11g04470.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15885	NAC125	ONAC125	NAC DOMAIN-CONTAINING PROTEIN 125	NAC domain-containing protein 125	NAC DOMAIN-CONTAINING PROTEIN 125		11	LOC_Os11g04960.	 Other	Os11g0146900	LOC_Os11g04960.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15886	NAC126	ONAC126	NAC DOMAIN-CONTAINING PROTEIN 126	NAC domain-containing protein 126	NAC DOMAIN-CONTAINING PROTEIN 126		11	LOC_Os11g07700.	 Other	Os11g0179300	LOC_Os11g07700.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15887	NAC127	ONAC127, OsEnS-145	NAC DOMAIN-CONTAINING PROTEIN 127	NAC domain-containing protein 127, endosperm-specific gene 145	NAC DOMAIN-CONTAINING PROTEIN 127		11	LOC_Os11g31340.	 Other	Os11g0512100	LOC_Os11g31340.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15888	NAC128	ONAC128	NAC DOMAIN-CONTAINING PROTEIN 128	NAC domain-containing protein 128	NAC DOMAIN-CONTAINING PROTEIN 128		11	LOC_Os11g31360.	 Other	Os11g0512200	LOC_Os11g31360.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15889	NAC129	ONAC129	NAC DOMAIN-CONTAINING PROTEIN 129	NAC domain-containing protein 129	NAC DOMAIN-CONTAINING PROTEIN 129		11	LOC_Os11g31380.	 Other	Os11g0512600	LOC_Os11g31380.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15890	NAC130	ONAC130	NAC DOMAIN-CONTAINING PROTEIN 130	NAC domain-containing protein 130	NAC DOMAIN-CONTAINING PROTEIN 130		11	LOC_Os11g45950.	 Other	Os11g0686700	LOC_Os11g45950.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15891	NAC131	ONAC131	NAC DOMAIN-CONTAINING PROTEIN 131	NAC domain-containing protein 131	NAC DOMAIN-CONTAINING PROTEIN 131		12	LOC_Os12g03040.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os12g0123700	LOC_Os12g03040.1				GO:0051607 - defense response to virus, GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009635 - response to herbicide	TO:0000020 - black streak dwarf virus resistance, TO:0000058 - herbicide sensitivity, TO:0000148 - viral disease resistance, TO:0000386 - rice ragged stunt virus resistance	
15892	NAC133	ONAC133	NAC DOMAIN-CONTAINING PROTEIN 133	NAC domain-containing protein 133	NAC DOMAIN-CONTAINING PROTEIN 133		12	LOC_Os12g04230.	 Other	Os12g0137000	LOC_Os12g04230.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15893	NAC134	ONAC134	NAC DOMAIN-CONTAINING PROTEIN 134	NAC domain-containing protein 134	NAC DOMAIN-CONTAINING PROTEIN 134		12	LOC_Os12g05990.	 Other	Os12g0156100	LOC_Os12g05990.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15894	NAC135	ONAC135	NAC DOMAIN-CONTAINING PROTEIN 135	NAC domain-containing protein 135	NAC DOMAIN-CONTAINING PROTEIN 135		12	LOC_Os12g07790.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0177550	LOC_Os12g07790.1				GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0006001 - salt tolerance	
15895	NAC136	ONAC136, OsSTA279	NAC DOMAIN-CONTAINING PROTEIN 136	NAC domain-containing protein 136	NAC DOMAIN-CONTAINING PROTEIN 136		12	LOC_Os12g22630. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Other	Os12g0415000	LOC_Os12g22630.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		PO:0009066 - anther 
15896	NAC137	ONAC137	NAC DOMAIN-CONTAINING PROTEIN 137	NAC domain-containing protein 137	NAC DOMAIN-CONTAINING PROTEIN 137		12	LOC_Os12g22940.	 Other	Os12g0418300	LOC_Os12g22940.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15897	NAC138	ONAC138	NAC DOMAIN-CONTAINING PROTEIN 138	NAC domain-containing protein 138	NAC DOMAIN-CONTAINING PROTEIN 138		12	LOC_Os12g23090.	 Other	Os12g0419600	LOC_Os12g23090.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15898	NAC139	ONAC139, OsNAM	NAC DOMAIN-CONTAINING PROTEIN 139	NAC domain-containing protein 139, no apical meristem	NAC DOMAIN-CONTAINING PROTEIN 139		12	LOC_Os12g29330. OsNAM in Dixit et al. 2015. GO:0080181: lateral root branching.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os12g0477400	LOC_Os12g29330.1				GO:0010089 - xylem development, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000625 - spikelet density, TO:0000557 - secondary branch number, TO:0000447 - filled grain number, TO:0000180 - spikelet fertility	
15899	NAC140	ONAC140	NAC DOMAIN-CONTAINING PROTEIN 140	NAC domain-containing protein 140	NAC DOMAIN-CONTAINING PROTEIN 140		12	LOC_Os12g43530.	 Other	Os12g0630800	LOC_Os12g43530.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15900	NAC141	ONAC141	NAC DOMAIN-CONTAINING PROTEIN 141	NAC domain-containing protein 141	NAC DOMAIN-CONTAINING PROTEIN 141		1	LOC_Os01g47670.		Os01g0667000	LOC_Os01g47670.1						
15901	NAC142	ONAC142	NAC DOMAIN-CONTAINING PROTEIN 142	NAC domain-containing protein 142	NAC DOMAIN-CONTAINING PROTEIN 142		3	LOC_Os03g61650.	 Other	Os03g0832000	LOC_Os03g61650.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15902	NAC143	ONAC143	NAC DOMAIN-CONTAINING PROTEIN 143	NAC domain-containing protein 143	NAC DOMAIN-CONTAINING PROTEIN 143		5	LOC_Os05g26026.		Os05g0326800	LOC_Os05g26026.1						
15903	NAC144	ONAC144	NAC DOMAIN-CONTAINING PROTEIN 144	NAC domain-containing protein 144	NAC DOMAIN-CONTAINING PROTEIN 144		5	LOC_Os05g26049.		Os05g0326500	LOC_Os05g26049.1						
15904	NAC145	ONAC145	NAC DOMAIN-CONTAINING PROTEIN 145	NAC domain-containing protein 145	NAC DOMAIN-CONTAINING PROTEIN 145		5	LOC_Os05g27749.		Os05g0348500	LOC_Os05g27749.1						
15905	NAC146	ONAC146	NAC DOMAIN-CONTAINING PROTEIN 146	NAC domain-containing protein 146	NAC DOMAIN-CONTAINING PROTEIN 146		5	LOC_Os05g28129 (not found in MSU Rice Genome Annotation Project Release 7 data).									
15906	NAC147	ONAC147	NAC DOMAIN-CONTAINING PROTEIN 147	NAC domain-containing protein 147	NAC DOMAIN-CONTAINING PROTEIN 147		7	LOC_Os07g31410.			LOC_Os07g31410						
15907	NAC148	ONAC148	NAC DOMAIN-CONTAINING PROTEIN 148	NAC domain-containing protein 148	NAC DOMAIN-CONTAINING PROTEIN 148		10	LOC_Os10g27380.	 Other	Os10g0413900	LOC_Os10g27380.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15908	NAC149	ONAC149	NAC DOMAIN-CONTAINING PROTEIN 149	NAC domain-containing protein 149	NAC DOMAIN-CONTAINING PROTEIN 149		11	LOC_Os11g04360.	 Other	Os11g0139066	LOC_Os11g04360.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0016787 - hydrolase activity		
15909	_	p-SINE1-r46	_	transposon p-SINE1-r46					 Other						GO:0032196 - transposition		
15910	_	p-SINE1-r55	_	transposon p-SINE1-r55				AB086076.	 Other						GO:0032196 - transposition		
15911	_	p-SINE1-r63	_	transposon p-SINE1-r63				AB086084.	 Other						GO:0032196 - transposition		
15912	_	p-SINE1-r68	_	transposon p-SINE1-r68				AB086088.	 Other						GO:0032196 - transposition		
15913	_	p-SINE1-r69	_	transposon p-SINE1-r69				AB086089.	 Other						GO:0032196 - transposition		
15914	_	p-SINE1-r70	_	transposon p-SINE1-r70				AB086090.	 Other						GO:0032196 - transposition		
15915	_	p-SINE1-r72	_	transposon p-SINE1-r72				AB086091.	 Other						GO:0032196 - transposition		
15916	_	p-SINE1-r217	_	transposon p-SINE1-r217					 Other						GO:0032196 - transposition		
15917	_	p-SINE1-r509	_	transposon p-SINE1-r509					 Other						GO:0032196 - transposition		
15918	_	p-SINE1-r601	_	transposon p-SINE1-r601				AB088070 (Oryza barthii).	 Other						GO:0032196 - transposition		
15919	_	p-SINE1-r605	_	transposon p-SINE1-r605				AB088071 (Oryza barthii).	 Other						GO:0032196 - transposition		
15920	_	p-SINE1-r606	_	transposon p-SINE1-r606				AB088072 (Oryza barthii).	 Other						GO:0032196 - transposition		
15921	_	p-SINE1-r607	_	transposon p-SINE1-r607				AB088073 (Oryza barthii).	 Other						GO:0032196 - transposition		
15922	_	p-SINE1-r701	_	transposon p-SINE1-r701				AB088074 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15923	_	p-SINE1-r702	_	transposon p-SINE1-r702				AB088075 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15924	_	p-SINE1-r703	_	transposon p-SINE1-r703				AB088076 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15925	_	p-SINE1-r705	_	transposon p-SINE1-r705				AB088077 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15926	_	p-SINE1-r706	_	transposon p-SINE1-r706				AB088078 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15927	_	p-SINE1-r707	_	transposon p-SINE1-r707				AB088079 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15928	_	p-SINE1-r708	_	transposon p-SINE1-r708				AB088080 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15929	_	p-SINE1-r709	_	transposon p-SINE1-r709				AB088081 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15930	_	p-SINE1-r801	_	transposon p-SINE1-r801				AB088122 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15931	_	p-SINE1-r803	_	transposon p-SINE1-r803				AB088123 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15932	_	p-SINE1-r804	_	transposon p-SINE1-r804				AB088124 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15933	_	p-SINE1-r806	_	transposon p-SINE1-r806				AB088125 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15934	_	p-SINE1-r807	_	transposon p-SINE1-r807				AB088126 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15935	_	p-SINE1-r808	_	transposon p-SINE1-r808				AB088127 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15936	_	p-SINE1-r901	_	transposon p-SINE1-r901				AB088128 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15937	_	p-SINE1-r902	_	transposon p-SINE1-r902				AB088129 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15938	_	p-SINE1-r903	_	transposon p-SINE1-r903				AB088130 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15939	_	p-SINE1-r904	_	transposon p-SINE1-r904				AB088131 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15940	_	p-SINE1-r905	_	transposon p-SINE1-r905				AB088132 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15941	_	p-SINE1-r906	_	transposon p-SINE1-r906				AB088133 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15942	_	p-SINE1-r907	_	transposon p-SINE1-r907				AB088134 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15943	_	p-SINE1-r908	_	transposon p-SINE1-r908				AB088135 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15944	_	rNBS8	_	NBS-LRR protein rNBS8			4	AF516886.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
15945	_	rNBS10	_	NBS-LRR protein rNBS10			11	AF516887.	 Tolerance and resistance - Disease resistance	Os11g0485900	LOC_Os11g29520.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15946	_	rNBS17	_	NBS-LRR protein rNBS17			4	AF516888.	 Tolerance and resistance - Disease resistance	Os04g0219600	LOC_Os04g14220.2, LOC_Os04g14220.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
15947	_	rNBS36	_	NBS-LRR protein rNBS36			7	AF516890.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
15948	_	rNBS41	_	NBS-LRR protein rNBS41			2	AF516891.	 Tolerance and resistance - Disease resistance	Os02g0262800	LOC_Os02g16270.2, LOC_Os02g16270.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
15949	_	rNBS44	_	NBS-LRR protein rNBS44			4	AF516893.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
15950	_	rNBS56	_	NBS-LRR protein rNBS56			4	AF516894.	 Tolerance and resistance - Disease resistance	Os04g0375300	LOC_Os04g30660.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
15951	_	rNBS78	_	NBS-LRR protein rNBS78			5	AF516895.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
15952	_	p-SINE1-r210	_	transposon p-SINE1-r210				AB086069.	 Other						GO:0032196 - transposition		
15953	_	p-SINE1-r215	_	transposon p-SINE1-r215				AB086070.	 Other						GO:0032196 - transposition		
15954	_	p-SINE1-r216	_	transposon p-SINE1-r216				AB086071.	 Other						GO:0032196 - transposition		
15955	_	p-SINE1-r50	_	transposon p-SINE1-r50					 Other						GO:0032196 - transposition		
15956	_	p-SINE1-r501	_	transposon p-SINE1-r501					 Other						GO:0032196 - transposition		
15957	_	p-SINE1-r503	_	transposon p-SINE1-r503					 Other						GO:0032196 - transposition		
15958	_	p-SINE1-r504	_	transposon p-SINE1-r504					 Other						GO:0032196 - transposition		
15959	_	p-SINE1-r505	_	transposon p-SINE1-r505					 Other						GO:0032196 - transposition		
15960	_	p-SINE1-r506	_	transposon p-SINE1-r506					 Other						GO:0032196 - transposition		
15961	_	p-SINE1-r507	_	transposon p-SINE1-r507					 Other						GO:0032196 - transposition		
15962	_	p-SINE1-r51	_	transposon p-SINE1-r51				AB086072.	 Other						GO:0032196 - transposition		
15963	_	p-SINE1-r52	_	transposon p-SINE1-r52				AB086073.	 Other						GO:0032196 - transposition		
15964	_	p-SINE1-r53	_	transposon p-SINE1-r53				AB086074.	 Other						GO:0032196 - transposition		
15965	_	p-SINE1-r54	_	transposon p-SINE1-r54				AB086075.	 Other						GO:0032196 - transposition		
15966	_	p-SINE1-r56	_	transposon p-SINE1-r56				AB086077.	 Other						GO:0032196 - transposition		
15967	_	p-SINE1-r57	_	transposon p-SINE1-r57				AB086078.	 Other						GO:0032196 - transposition		
15968	_	p-SINE1-r58	_	transposon p-SINE1-r58				AB086079.	 Other						GO:0032196 - transposition		
15969	_	p-SINE1-r59	_	transposon p-SINE1-r59				AB086080.	 Other						GO:0032196 - transposition		
15970	_	p-SINE1-r60	_	transposon p-SINE1-r60				AB086081.	 Other						GO:0032196 - transposition		
15971	_	p-SINE1-r61	_	transposon p-SINE1-r61				AB086082.	 Other						GO:0032196 - transposition		
15972	_	p-SINE1-r62	_	transposon p-SINE1-r62				AB086083.	 Other						GO:0032196 - transposition		
15973	_	p-SINE1-r64	_	transposon p-SINE1-r64				AB086085.	 Other						GO:0032196 - transposition		
15974	_	p-SINE1-r65	_	transposon p-SINE1-r65				AB086086.	 Other						GO:0032196 - transposition		
15975	_	p-SINE1-r66	_	transposon p-SINE1-r66				AB086087.	 Other						GO:0032196 - transposition		
15976	_	R2R3-MYB	_	MYB domain protein			1	AJ575220. AY459345, AP003242.	 Seed,  Other	Os01g0850400	LOC_Os01g63160.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15977	_		_	MYB domain protein			3	AJ575221.	 Seed,  Other	Os03g0425800	LOC_Os03g31230.2, LOC_Os03g31230.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15978	_		_	MYB domain protein			2	AJ575222.	 Seed,  Other	Os02g0271900	LOC_Os02g17190.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15979	_		_	homeodomain protein			2	AJ575223.	 Seed,  Other	Os02g0147800	LOC_Os02g05450.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0009733 - response to auxin stimulus, GO:0008270 - zinc ion binding	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15980	_	OsFbox304, Os_F0494	_	F-box protein 304			6	AJ575242. LOC_Os06g11630. Os_F0494 in Hua et al. 2011.	 Seed,  Other	Os06g0219700	LOC_Os06g11630.1				GO:0010629 - negative regulation of gene expression, GO:0010608 - posttranscriptional regulation of gene expression, GO:0009737 - response to abscisic acid stimulus	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15981	_		_	BSD domain protein			3	AJ575244.	 Seed,  Other	Os03g0729900	LOC_Os03g52000.1					TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15983	_		_	clathrin assenbly Enth domain protein			4	AJ575225.	 Seed	Os04g0599900	LOC_Os04g51120.3, LOC_Os04g51120.1				GO:0006623 - protein targeting to vacuole, GO:0005884 - actin filament, GO:0009579 - thylakoid	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15984	_		_	VHS domain protein			1	AJ575226.	 Seed	Os01g0232400	LOC_Os01g13160.1				GO:0016020 - membrane, GO:0006886 - intracellular protein transport	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15985	_		_	VHS and GAT domain protein			1	AJ575227.	 Seed	Os01g0825700	LOC_Os01g61030.1				GO:0005622 - intracellular, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15986	_		_	Pbi and ZZ domain DBP protein			2	AJ575228.	 Seed	Os02g0593700	LOC_Os02g38050.6, LOC_Os02g38050.5, LOC_Os02g38050.4, LOC_Os02g38050.3, LOC_Os02g38050.2, LOC_Os02g38050.1				GO:0008270 - zinc ion binding	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15987	_		_	Pbi and ZZ domain DBP protein			4	AJ575229.	 Seed	Os04g0476800	LOC_Os04g40090.1				GO:0008270 - zinc ion binding	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15988	_		_	DNA J domain protein			3	AJ575230.	 Seed	Os03g0111500	LOC_Os03g02080.2, LOC_Os03g02080.1					TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15989	_		_	RING-finger protein			7	AJ575231.	 Seed	Os07g0461600	LOC_Os07g27760.4, LOC_Os07g27760.3, LOC_Os07g27760.2, LOC_Os07g27760.1					TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15990	_		_	calcium-binding repeat protein			1	AJ575232.	 Seed	Os01g0813900	LOC_Os01g59850.1				GO:0032312 - regulation of ARF GTPase activity, GO:0008270 - zinc ion binding, GO:0008060 - ARF GTPase activator activity	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15991	_		_	calcium-binding repeat protein			2	AJ575233.	 Seed	Os02g0208900	LOC_Os02g11820.3, LOC_Os02g11820.2, LOC_Os02g11820.1				GO:0032312 - regulation of ARF GTPase activity, GO:0008060 - ARF GTPase activator activity, GO:0008270 - zinc ion binding	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15992	_		_	RNA-binding domain protein			8	AJ575234.	 Seed	Os08g0412200	LOC_Os08g31810.3, LOC_Os08g31810.2, LOC_Os08g31810.1				GO:0005730 - nucleolus, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15993	_		_	Finger zinc testis metal-binding protein			1	AJ575235.	 Seed	Os01g0663800	LOC_Os01g47430.2, LOC_Os01g47430.1					TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15994	_	OsMyoXIA	_	Myosin XIA, Myosin class XI A			1	AP003410: 137196-116065 (myosin pseudogene). 									
15995	_	OSMYOXIC, OsMyoXIC	_	myosin XIC, Myosin class XI C			2	AP004140: 35317-52347.									
15996	_	OSMYOXID, OsMyoXID	_	myosin XID, Myosin class XI D			2	AP005771: 26013-57487 (OSJNBa0069D13.10).							GO:0003774 - motor activity, GO:0016459 - myosin complex, GO:0005524 - ATP binding		
15997	_	OSMYOXIF, OsMyoXIF	_	myosin XIF, Myosin class XI F			3	AC092779: 27008-40325.									
15998	_	OSMYOXIG, OsMyoXIG	_	myosin XIG, Myosin class XI G			3	AC092263: 78631-95406 (OSJNBa0033P04.23).							GO:0016459 - myosin complex, GO:0003774 - motor activity, GO:0048767 - root hair elongation, GO:0005524 - ATP binding		
15999	_	OSMYOXIH, OsMyoXIH	_	myosin XIH, Myosin class XI H			5	AC097112: 124399-142659 (OJ1741_B01.17).							GO:0003774 - motor activity, GO:0016459 - myosin complex, GO:0005524 - ATP binding		
16000	_	OSMYOXI-I, OsMyoXI-I	_	myosin XI-I, Myosin class XI I			5	AC104273: 70015-56697.									
16001	_	OSMYOXIJ, OsMyoXIJ	_	myosin XIJ, Myosin class XI J			6	AP004728: 89706-110587.									
16002	_	OSMYOXIK, OsMyoXIK	_	myosin XIK, Myosin class XI K			10	AAM44879.							GO:0003774 - motor activity, GO:0016459 - myosin complex, GO:0005524 - ATP binding		
16003	_	OSMYOXIL, OsMyoXIL	_	myosin XIL, Myosin class XI L			10	AAK98715.							GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0016459 - myosin complex, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003774 - motor activity		
16004	_	OSMYOVIIIB, OsMyoVIIIB	_	myosin VIIIB, Myosin class VIII B			10	AAL31066.		Os10g0488800	LOC_Os10g34710.1				GO:0003774 - motor activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0016459 - myosin complex		
16005	RPS7	rps7	RIBOSOMAL PROTEIN S7	ribosomal protein S7, chloroplast 30S ribosomal protein S7	RIBOSOMAL PROTEIN S7			AU070286, AU173957.	 Tolerance and resistance - Stress tolerance,  Other							TO:0000432 - temperature response trait	
16006	_	SUI1	_	protein translation factor SUI1			5	AU161922, AU161923.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0498400	LOC_Os05g41900.4, LOC_Os05g41900.3, LOC_Os05g41900.2, LOC_Os05g41900.1				GO:0003743 - translation initiation factor activity	TO:0000432 - temperature response trait	
16007	_		_	60S acidic ribosomal protein P0			12	AU062501, AU092216, AU062621, AU108592.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0133050	LOC_Os12g03880.1				GO:0009651 - response to salt stress, GO:0005507 - copper ion binding, GO:0009507 - chloroplast, GO:0046686 - response to cadmium ion, GO:0048046 - apoplast, GO:0042254 - ribosome biogenesis, GO:0009409 - response to cold, GO:0010043 - response to zinc ion, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0022626 - cytosolic ribosome	TO:0000432 - temperature response trait	
16008	RPL18	rpl18	RIBOSOMAL PROTEIN L18	ribosomal protein L18, 60S ribosomal protein L18	RIBOSOMAL PROTEIN L18		5	AU164919, AU031524.	 Tolerance and resistance - Stress tolerance	Os05g0155100	LOC_Os05g06310.1				GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0016020 - membrane, GO:0009506 - plasmodesma, GO:0006412 - translation, GO:0005773 - vacuole	TO:0000432 - temperature response trait	
16009	RPL2	rpl2, rpl8, RPL8, OsRPL2, OsRPL8	RIBOSOMAL PROTEIN L2	ribosomal protein L2, 60S ribosomal protein L2, ribosomal protein L8, 60S ribosomal protein L8	RIBOSOMAL PROTEIN L2		12	LOC_Os12g38000.1 AU095410, AU031615. D16033. RPL8 in Moin et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os12g0567700	LOC_Os12g38000.1				GO:0003723 - RNA binding, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0009507 - chloroplast, GO:0022625 - cytosolic large ribosomal subunit	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000432 - temperature response trait	PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009005 - root , PO:0009006 - shoot system , PO:0020032 - plumule 
16010	RPL7	rpl7	RIBOSOMAL PROTEIN L7	ribosomal protein L7, 60S ribosomal protein L7	RIBOSOMAL PROTEIN L7		4	AU164554. D29720.	 Tolerance and resistance - Stress tolerance	Os04g0605900	LOC_Os04g51630.3, LOC_Os04g51630.2, LOC_Os04g51630.1				GO:0005840 - ribosome	TO:0000432 - temperature response trait	
16011	RPL18A	rpl18a, RPL18a, OsRPL18a	RIBOSOMAL PROTEIN L18A	ribosomal protein L18a	RIBOSOMAL PROTEIN L18A		5	LOC_Os05g49030.1 D22132.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os05g0565000	LOC_Os05g49030.1				GO:0016020 - membrane, GO:0022625 - cytosolic large ribosomal subunit, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009506 - plasmodesma	TO:0000432 - temperature response trait, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009089 - endosperm , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009005 - root 
16012	RPS4	rps4, RPS4a	RIBOSOMAL PROTEIN S4	ribosomal protein S4, ribosomal protein S4 type I, ribosomal protein S4a, ribosomal protein small subunit 4a	RIBOSOMAL PROTEIN S4		5	LOC_Os05g30530. C19518, C99258. RPS4a in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os05g0368300	LOC_Os05g30530.1				GO:0042542 - response to hydrogen peroxide, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0042742 - defense response to bacterium	TO:0000432 - temperature response trait, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
16013	_		_	HMG protein, high-mobility group protein			9	D47590. D22603. D29711.	 Tolerance and resistance - Stress tolerance	Os09g0551600	LOC_Os09g37910.1					TO:0000432 - temperature response trait	
16014	_	VLN2, OsVLN2, Os VLN2	_	villin 3, VILLIN2, VILLIN 2		vln2	3	AU166286. VLN2 in Wu et al. 2015 and Dedecker et al. 2016. GO:0060918: auxin transport. LOC_Os03g24220. APC regulator. APC regulatory subunit. 	 Tolerance and resistance - Stress tolerance	Os03g0356700	LOC_Os03g24220.2, LOC_Os03g24220.1				GO:0016049 - cell growth, GO:0032956 - regulation of actin cytoskeleton organization, GO:0032970 - regulation of actin filament-based process, GO:0005884 - actin filament, GO:0051014 - actin filament severing, GO:0051017 - actin filament bundle formation, GO:0009630 - gravitropism	TO:0000432 - temperature response trait, TO:0002693 - gravity response trait, TO:0002672 - auxin content	
16016	_		_	Vacuolar sorting receptor			3	AU173952, AU057343.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0335300	LOC_Os03g21720.1				GO:0009940 - amino-terminal vacuolar sorting propeptide binding, GO:0005509 - calcium ion binding, GO:0006623 - protein targeting to vacuole, GO:0006896 - Golgi to vacuole transport, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane	TO:0000432 - temperature response trait	
16017	_		_	cysteine proteinase 1			2	C91690, AU029682.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0469600	LOC_Os02g27030.1				GO:0008234 - cysteine-type peptidase activity, GO:0005773 - vacuole, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0042742 - defense response to bacterium	TO:0000432 - temperature response trait	
16018	_		_	SEC61 alpha subunit			3	C26358, AU100706.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0213100	LOC_Os03g11440.1				GO:0016020 - membrane, GO:0015031 - protein transport	TO:0000432 - temperature response trait	
16019	_		_	dihydrofolate reductase			4	AU056351.	 Tolerance and resistance - Stress tolerance	Os04g0450100	LOC_Os04g37710.1					TO:0000432 - temperature response trait	
16020	XDH1	OsXDH1	XANTHINE DEHYDROGENASE 1	Xanthine dehydrogenase, xanthine dehydrogenase 1	XANTHINE DEHYDROGENASE 1		3	AU067858, AU067859. Q6AUV1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0429800	LOC_Os03g31550.2, LOC_Os03g31550.1				GO:0004854 - xanthine dehydrogenase activity, GO:0005506 - iron ion binding, GO:0050660 - FAD binding, GO:0009055 - electron carrier activity, GO:0000302 - response to reactive oxygen species, GO:0009414 - response to water deprivation, GO:0042554 - superoxide anion generation, GO:0046110 - xanthine metabolic process, GO:0005829 - cytosol, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity	TO:0000432 - temperature response trait	
16021	_		_	ATP synthase C chain				AU075867, AU075868.	 Biochemical character,  Tolerance and resistance - Stress tolerance							TO:0000432 - temperature response trait	
16022	_		_	ATP synthase delta chain			6	AU064654, AU094876.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0646500	LOC_Os06g43850.1				GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0015986 - ATP synthesis coupled proton transport, GO:0050897 - cobalt ion binding, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0008270 - zinc ion binding, GO:0005753 - mitochondrial proton-transporting ATP synthase complex	TO:0000432 - temperature response trait	
16023	_	NFR	_	cytochrome b5 reductase			1	D23879, AU031680.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0814900	LOC_Os01g59930.2, LOC_Os01g59930.1				GO:0016491 - oxidoreductase activity, GO:0005886 - plasma membrane, GO:0022900 - electron transport chain, GO:0005783 - endoplasmic reticulum, GO:0009505 - plant-type cell wall	TO:0000432 - temperature response trait	
16024	_		_	Cyt-P450 monooxygenase				AU173996.	 Biochemical character,  Tolerance and resistance - Stress tolerance							TO:0000432 - temperature response trait	
16025	_		_	isopenicillin N epimerase homolog			1	AU173240, AU173241.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0290600	LOC_Os01g18660.1				GO:0030170 - pyridoxal phosphate binding, GO:0003824 - catalytic activity	TO:0000432 - temperature response trait	
16026	_	OsACBP1, ACBP1	_	Acyl-CoA-binding protein, Acyl-CoA-binding protein 1			8	AU174447. LOC_Os08g06550. resembles bovine ACBP.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0162800	LOC_Os08g06550.1				GO:0005829 - cytosol, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0000062 - acyl-CoA binding	TO:0000303 - cold tolerance, TO:0000432 - temperature response trait, TO:0000074 - blast disease	PO:0025034 - leaf 
16027	_	ACX2, OsACX2	_	acyl-CoA oxidase 2			11	LOC_Os11g39220. AU064119, AU101254. GO:0071949: FAD binding. ACX in Yang et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0605500	LOC_Os11g39220.2, LOC_Os11g39220.1				GO:0001676 - long-chain fatty acid metabolic process, GO:0005777 - peroxisome, GO:0003997 - acyl-CoA oxidase activity, GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors, GO:0006635 - fatty acid beta-oxidation	TO:0000432 - temperature response trait	
16028	_		_	beta-ketoacyl synthase			2	C73655, AU108182.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0297200	LOC_Os02g19470.1					TO:0000432 - temperature response trait	
16029	_		_	bifunctional nuclease			1	D48949, AU097625.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0128200	LOC_Os01g03730.1				GO:0004519 - endonuclease activity, GO:0006308 - DNA catabolic process, GO:0003676 - nucleic acid binding	TO:0000432 - temperature response trait	
16030	_		_	beta-ketoacyl reductase			2	AU173217.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0597900	LOC_Os02g38440.1					TO:0000432 - temperature response trait	
16031	BETACA1	OsCA, CA, OsbetaCA1, betaCA1	BETA-CARBONIC ANHYDRASE 1	Carbonic anhydrase, beta-type carbonic anhydrase, beta-carbonic anhydrase	BETA-CARBONIC ANHYDRASE 1		1	LOC_Os01g45274. AU056257, AU056258. U08404. BF889440. AB016283. GO:0090333: regulation of stomatal closure.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0639900	LOC_Os01g45274.4, LOC_Os01g45274.3, LOC_Os01g45274.2, LOC_Os01g45274.1				GO:0009409 - response to cold, GO:0004089 - carbonate dehydratase activity, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0009408 - response to heat, GO:0010319 - stromule, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009941 - chloroplast envelope, GO:0010037 - response to carbon dioxide, GO:0010119 - regulation of stomatal movement, GO:0015976 - carbon utilization, GO:0042742 - defense response to bacterium, GO:0048046 - apoplast, GO:0050832 - defense response to fungus	TO:0000552 - shoot dry weight, TO:0000432 - temperature response trait, TO:0000520 - stomatal closure rate, TO:0000571 - shoot fresh weight, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000522 - stomatal conductance, TO:0000316 - photosynthetic ability, TO:0001015 - photosynthetic rate, TO:0000457 - total biomass yield	PO:0000293 - guard cell 
16032	_		_	lipase			1	AU101109. Q5NAI4. GO:0071493: cellular response to UV-B.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0710700	LOC_Os01g51360.2, LOC_Os01g51360.1				GO:0005737 - cytoplasm, GO:0008970 - phospholipase A1 activity, GO:0004806 - triacylglycerol lipase activity, GO:0009507 - chloroplast, GO:0016042 - lipid catabolic process, GO:0009650 - UV protection	TO:0000432 - temperature response trait	
16033	ALDH11A3	OsALDH11A3, GAPN	ALDEHYDE DEHYDROGENASE 11A3	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, Aldehyde dehydrogenase 11A3	ALDEHYDE DEHYDROGENASE 11A3		8	LOC_Os08g34210. AU108817, C97061, D48732, AU032835.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0440800	LOC_Os08g34210.2, LOC_Os08g34210.1				GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, GO:0005737 - cytoplasm	TO:0000432 - temperature response trait	
16034	_		_	plant short chain slcohol dehydrogenase			7	C72731, AU165528.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0664400	LOC_Os07g46930.1				GO:0016491 - oxidoreductase activity	TO:0000432 - temperature response trait	
16035	_		_	glycine decarboxylase complex H-protein			2	C26203, AU100677.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0170100	LOC_Os02g07410.2, LOC_Os02g07410.1				GO:0019464 - glycine decarboxylation via glycine cleavage system, GO:0005524 - ATP binding, GO:0005960 - glycine cleavage complex	TO:0000432 - temperature response trait	
16036	_		_	Homo sapiens h-bcs1 (BCS1) mitochondrial protein homolog			3	C99346, AU101318. AAA-type ATPase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0802500 	LOC_Os03g58790.1				GO:0017111 - nucleoside-triphosphatase activity, GO:0005524 - ATP binding	TO:0000432 - temperature response trait	
16037	_		_	CaM-like protein			3	C74259, AU091362.	 Tolerance and resistance - Stress tolerance	Os03g0769500	LOC_Os03g55960.1				GO:0005509 - calcium ion binding	TO:0000432 - temperature response trait	
16038	_	WZF1	_	finger protein WZF1			3	D25079. HQ858838. BF889468. C2H2 transcription factor.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0764100	LOC_Os03g55540.1				GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0009753 - response to jasmonic acid stimulus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000432 - temperature response trait	
16039	_		_	NAC-like protein, nascent polypeptide-associated complex alpha chain			3	C74114, AU091318. AY224519.	 Tolerance and resistance - Stress tolerance	Os03g0121700	LOC_Os03g02960.1					TO:0000432 - temperature response trait	
16040	_		_	RING finger-like protein			8	C71770, C98483.	 Tolerance and resistance - Stress tolerance	Os08g0387200	LOC_Os08g29760.1				GO:0016021 - integral to membrane	TO:0000432 - temperature response trait	
16041	_	OsRBX1b, RBX1b	_	RING-box protein, RING-BOX1b			1	C74163, AU101400. XP_015618780.1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0106800	LOC_Os01g01700.1				GO:0019005 - SCF ubiquitin ligase complex, GO:0008270 - zinc ion binding, GO:0009733 - response to auxin stimulus, GO:0031463 - Cul3-RING ubiquitin ligase complex	TO:0000432 - temperature response trait	
16042	GRAS3	SCL1, OsSCL1, OsGRAS-3, OsGRAS3, GRAS-3	GRAS PROTEIN 3	Arabidopsis thaliana scarecrow-like 1, GRAS protein 3	GRAS PROTEIN 3		1	AU057316, AU057317.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0881500	LOC_Os01g65900.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000432 - temperature response trait	
16044	_		_	the large subunit of RNA polymerase II				AU166454, AU166455.	 Tolerance and resistance - Stress tolerance							TO:0000432 - temperature response trait	
16045	_		_	Arabidopsis thaliana ERD15 protein homolog			3	C72401, AU172487.	 Tolerance and resistance - Stress tolerance	Os03g0353400	LOC_Os03g23010.5, LOC_Os03g23010.4, LOC_Os03g23010.3, LOC_Os03g23010.2, LOC_Os03g23010.1					TO:0000432 - temperature response trait	
16046	_		_	pathogenesis-related protein			3	AU075857, AU075858.	 Tolerance and resistance - Stress tolerance							TO:0000432 - temperature response trait	
16047	_	NALP1	_	nuclear ankyrin like protein 1			10	AB110173.		Os10g0580700	LOC_Os10g43040.1						
16048	_	OsNMCP1a	_	nuclear matrix protein NMCP1a			2	AB110204.		Os02g0709900 	LOC_Os02g48010.1				GO:0005652 - nuclear lamina, GO:0005829 - cytosol, GO:0006997 - nucleus organization		
16049	_	OsAHP1	_				4	AB110206. a probable HMG I/Y-type chromatin proteincontaining an AT-Hook motif.		Os04g0589900	LOC_Os04g49990.2, LOC_Os04g49990.1				GO:0003677 - DNA binding		
16050	_	OsSAD1, SAD1, OsSUN2, SUN2	_	SUN (Sad1/UNC-84) domain-containing protein 2, SUN domain-containing protein 2, SUN protein 2			5	LOC_Os05g18770. AB110207. a homolog of human SAD1. a SUN protein associated with the nuclear envelope.	 Tolerance and resistance - Stress tolerance	Os05g0270200	LOC_Os05g18770.1				GO:0009409 - response to cold, GO:0043495 - protein anchor, GO:0016021 - integral to membrane, GO:0005635 - nuclear envelope, GO:0006998 - nuclear envelope organization, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	PO:0009089 - endosperm , PO:0009072 - plant ovary , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0025060 - lamina , PO:0000025 - root tip , PO:0009005 - root 
16051	_	OsRH5	_	RNA helicase 5			7	AB110202. Q6YS30. a p68-like DEAD-box RNA helicase. LOC_Os07g20580.		Os07g0301200	LOC_Os07g20580.1				GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0005730 - nucleolus, GO:0005829 - cytosol, GO:0006364 - rRNA processing		
16052	SCL30B	OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b	SC35-LIKE PROTEIN 30B	SC35-like protein 30b, SCL subfamily protein 30b	SC35-LIKE PROTEIN 30B	scl30	12	LOC_Os12g38430. AB110200. an SC35-like splicing factor. Os-SCL30 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os12g0572400	LOC_Os12g38430.1, LOC_Os12g38420.1				GO:0003676 - nucleic acid binding, GO:0016607 - nuclear speck, GO:0006979 - response to oxidative stress, GO:0000166 - nucleotide binding, GO:0042594 - response to starvation		
16053	_		_				1	AB110201. a probable acidic endochitinase.	 Biochemical character	Os01g0687400	LOC_Os01g49320.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
16055	_	p-SINE2-r24	_	transposon p-SINE2-r24, retroposon p-SINE2-r24			6		 Other						GO:0032196 - transposition		
16056	_	p-SINE2-r2001	_	transposon p-SINE2-r2001, retroposon p-SINE2-r2001			11	AB206876.	 Other						GO:0032196 - transposition		
16057	_	p-SINE2-r2002	_	transposon p-SINE2-r2002, retroposon p-SINE2-r2002			1	AB206877.	 Other						GO:0032196 - transposition		
16058	_	p-SINE2-r2003	_	transposon p-SINE2-r2003, retroposon p-SINE2-r2003			3	AB206878.	 Other						GO:0032196 - transposition		
16059	_	p-SINE2-r2004	_	transposon p-SINE2-r2004, retroposon p-SINE2-r2004			10	AB206879.	 Other						GO:0032196 - transposition		
16060	_	p-SINE2-r2005	_	transposon p-SINE2-r2005, retroposon p-SINE2-r2005			4	AB206880.	 Other						GO:0032196 - transposition		
16061	_	p-SINE2-r2006	_	transposon p-SINE2-r2006, retroposon p-SINE2-r2006			10	AB206881.	 Other						GO:0032196 - transposition		
16062	_	p-SINE2-r2007	_	transposon p-SINE2-r2007, retroposon p-SINE2-r2007			3	AB206882.	 Other						GO:0032196 - transposition		
16063	_	p-SINE2-r2009	_	transposon p-SINE2-r2009, retroposon p-SINE2-r2009			10	AB206884.	 Other						GO:0032196 - transposition		
16064	_	p-SINE2-r2010	_	transposon p-SINE2-r2010, retroposon p-SINE2-r2010			10	AB206885.	 Other						GO:0032196 - transposition		
16065	_	p-SINE2-r2012	_	transposon p-SINE2-r2012, retroposon p-SINE2-r2012			11	AB206887.	 Other						GO:0032196 - transposition		
16066	_	p-SINE2-r2013	_	transposon p-SINE2-r2013, retroposon p-SINE2-r2013			12	AB206888.	 Other						GO:0032196 - transposition		
16067	_	p-SINE2-r2014	_	transposon p-SINE2-r2014, retroposon p-SINE2-r2014			6	AB206889.	 Other						GO:0032196 - transposition		
16068	_	p-SINE2-r2015	_	transposon p-SINE2-r2015, retroposon p-SINE2-r2015			8	AB206890.	 Other						GO:0032196 - transposition		
16069	_	p-SINE2-r2016	_	transposon p-SINE2-r2016, retroposon p-SINE2-r2016			9	AB206891.	 Other						GO:0032196 - transposition		
16070	_	p-SINE2-r2017	_	transposon p-SINE2-r2017, retroposon p-SINE2-r2017			8	AB206892.	 Other						GO:0032196 - transposition		
16071	_	p-SINE2-r2018	_	transposon p-SINE2-r2018, retroposon p-SINE2-r2018			12	AB206893.	 Other						GO:0032196 - transposition		
16072	_	p-SINE3-r3001	_	transposon p-SINE3-r3001, retroposon p-SINE3-r3001			11	AB206895. p-SINE3-r3001 is present in indica strain 93-11, but not in japonica strain Nipponbare.	 Other						GO:0032196 - transposition		
16073	_	p-SINE3-r3002	_	transposon p-SINE3-r3002, retroposon p-SINE3-r3002			3	AB206896.	 Other						GO:0032196 - transposition		
16074	_	p-SINE3-r3003	_	transposon p-SINE3-r3003, retroposon p-SINE3-r3003			5	AB206897.	 Other						GO:0032196 - transposition		
16075	_	p-SINE3-r3004	_	transposon p-SINE3-r3004, retroposon p-SINE3-r3004			12	AB206898.	 Other						GO:0032196 - transposition		
16076	_	p-SINE3-r3005	_	transposon p-SINE3-r3005, retroposon p-SINE3-r3005			1	AB206899.	 Other						GO:0032196 - transposition		
16077	_	p-SINE3-r3006	_	transposon p-SINE3-r3006, retroposon p-SINE3-r3006			6	AB206900.	 Other						GO:0032196 - transposition		
16078	_	p-SINE3-r3007	_	transposon p-SINE3-r3007, retroposon p-SINE3-r3007			7	AB206901.	 Other						GO:0032196 - transposition		
16079	_	p-SINE3-r3008	_	transposon p-SINE3-r3008, retroposon p-SINE3-r3008			8	AB206902.	 Other						GO:0032196 - transposition		
16080	_	p-SINE3-r3009	_	transposon p-SINE3-r3009, retroposon p-SINE3-r3009			8	AB206903.	 Other						GO:0032196 - transposition		
16081	_	p-SINE3-r3010	_	transposon p-SINE3-r3010, retroposon p-SINE3-r3010			6	AB206904.	 Other						GO:0032196 - transposition		
16082	_	p-SINE3-r3011	_	transposon p-SINE3-r3011, retroposon p-SINE3-r3011			5	AB206905.	 Other						GO:0032196 - transposition		
16083	_	p-SINE3-r3012	_	transposon p-SINE3-r3012, retroposon p-SINE3-r3012			5	AB206906.	 Other						GO:0032196 - transposition		
16084	_	p-SINE3-r3013	_	transposon p-SINE3-r3013, retroposon p-SINE3-r3013			5	AB206907.	 Other						GO:0032196 - transposition		
16085	_	p-SINE3-r3014	_	transposon p-SINE3-r3014, retroposon p-SINE3-r3014			5	AB206908.	 Other						GO:0032196 - transposition		
16086	_	p-SINE3-r3015	_	transposon p-SINE3-r3015, retroposon p-SINE3-r3015			3	AB206909.	 Other						GO:0032196 - transposition		
16087	_	p-SINE3-r3016A	_	transposon p-SINE3-r3016A, retroposon p-SINE3-r3016A			5	AB206910.	 Other						GO:0032196 - transposition		
16088	_	p-SINE3-r3016B	_	transposon p-SINE3-r3016B, retroposon p-SINE3-r3016B			5	AB206910.	 Other						GO:0032196 - transposition		
16089	_	p-SINE3-r3017	_	transposon p-SINE3-r3017, retroposon p-SINE3-r3017			3	AB206911.	 Other						GO:0032196 - transposition		
16090	_	p-SINE3-r3018	_	transposon p-SINE3-r3018, retroposon p-SINE3-r3018			12	AB206912.	 Other						GO:0032196 - transposition		
16091	_	p-SINE3-r3019	_	transposon p-SINE3-r3019, retroposon p-SINE3-r3019			1	AB206913.	 Other						GO:0032196 - transposition		
16092	_	p-SINE3-r3020	_	transposon p-SINE3-r3020, retroposon p-SINE3-r3020			6	AB206914.	 Other						GO:0032196 - transposition		
16093	_	p-SINE3-r3021	_	transposon p-SINE3-r3021, retroposon p-SINE3-r3021			1	AB206915.	 Other						GO:0032196 - transposition		
16094	_	p-SINE3-r3022	_	transposon p-SINE3-r3022, retroposon p-SINE3-r3022			1	AB206916.	 Other						GO:0032196 - transposition		
16095	_	p-SINE3-r3023	_	transposon p-SINE3-r3023, retroposon p-SINE3-r3023			7	AB206917.	 Other						GO:0032196 - transposition		
16096	_	p-SINE3-r3024	_	transposon p-SINE3-r3024, retroposon p-SINE3-r3024			12	AB206918.	 Other						GO:0032196 - transposition		
16097	_		_	6-phosphogluconolactonase			9	Q69NG5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0529100	LOC_Os09g35970.1				GO:0009507 - chloroplast, GO:0006098 - pentose-phosphate shunt, GO:0017057 - 6-phosphogluconolactonase activity	TO:0000432 - temperature response trait	
16098	_		_	adenylate kinase			3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0130400	LOC_Os03g03820.1				GO:0048367 - shoot development, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0004017 - adenylate kinase activity, GO:0008652 - cellular amino acid biosynthetic process, GO:0048364 - root development, GO:0009570 - chloroplast stroma	TO:0000432 - temperature response trait	
16099	_	OsMDAR4, OsMDHAR4	_	monodehydroascorbate reductase 4			8	membrane-bound peroxisomal isoform.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0557600	LOC_Os08g44340.1				GO:0045454 - cell redox homeostasis, GO:0016491 - oxidoreductase activity, GO:0050660 - FAD binding, GO:0016656 - monodehydroascorbate reductase (NADH) activity	TO:0000432 - temperature response trait	
16100	_	NIP	_	nitrate-induced NOI protein, nitrate-induced protein			6	DQ285630, DQ352453, DQ454158.									
16101	_	Nbs1-Pi9, Nbs1-Pi2, Nbs1-NPB	_				6	a NBS-LRR type R protein. DQ285630, DQ352453, DQ454158. Pi2/9 homolog. LOC_Os06g17880.	 Tolerance and resistance - Disease resistance	Os06g0286500	LOC_Os06g17880.1				GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000074 - blast disease	
16102	_	Nbs3-Pi9	_				6	a NBS-LRR type R protein. DQ285630.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000074 - blast disease	
16103	_	Nbs2-Pi9, Pi9, Nbs2-Pi2, Nbs2-NPB	_				6	a NBS-LRR type R protein. DQ285630, DQ352453, DQ454158 (pseudogene).	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000074 - blast disease	
16104	_	Nbs4-Pi9, Nbs3-Pi2	_				6	a NBS-LRR type R pseudogene. DQ285630, DQ352453.									
16105	_	Nbs5-Pi9, Nbs4-Pi2	_				6	a NBS-LRR type R protein. DQ285630, DQ352453.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000074 - blast disease	
16106	_	Nbs6-Pi9	_				6	a NBS-LRR type R protein. DQ285630.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000074 - blast disease	
16107	_	Nbs7-75, Nbs7-Pi2, Nbs5-NPB	_				6	a NBS-LRR type R protein. DQ454157, DQ352453, DQ454158 (pseudogene).	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000074 - blast disease	
16108	_	Nbs9-75, Nbs9-Pi2, Nbs7-NPB	_				6	a NBS-LRR type R protein. DQ454157, DQ352453 (pseudogene), DQ454158 (pseudogene).	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000074 - blast disease	
16109	_	Nbs5-Pi2, Nbs3-NPB	_				6	a NBS-LRR type R pseudogene. DQ352453, DQ454158.									
16110	_	Nbs6-Pi2, Nbs4-NPB	_				6	a NBS-LRR type R pseudogene. DQ352453, DQ454158.									
16111	_	Nbs8-75, Nbs8-Pi2, Nbs6-NPB	_				6	a NBS-LRR type R pseudogene. DQ454157, DQ352453, DQ454158.									
16112	_	PK	_	protein kinase			6	DQ352453, DQ454158.		Os06g0288100	LOC_Os06g18000.1				GO:0004674 - protein serine/threonine kinase activity, GO:0060862 - negative regulation of floral organ abscission, GO:0010942 - positive regulation of cell death, GO:0031349 - positive regulation of defense response, GO:0005524 - ATP binding		
16113	_	p-SINE1-r401	_	transposon p-SINE1-r401				AB201718 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16114	_	p-SINE1-r402	_	transposon p-SINE1-r402				AB201719 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16115	_	p-SINE1-r403	_	transposon p-SINE1-r403				AB201720 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16116	_	p-SINE1-r404	_	transposon p-SINE1-r404				AB201721 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16117	_	p-SINE1-r405	_	transposon p-SINE1-r405				AB201722 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16118	_	p-SINE1-r406	_	transposon p-SINE1-r406				AB201723 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16119	_	p-SINE1-r411	_	transposon p-SINE1-r411				AB201724 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16120	_	p-SINE1-r412	_	transposon p-SINE1-r412				AB201725 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16121	_	p-SINE1-r413	_	transposon p-SINE1-r413				AB201726 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16122	_	p-SINE1-r414	_	transposon p-SINE1-r414				AB201727 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16123	_	p-SINE1-r421	_	transposon p-SINE1-r421				AB201728 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16124	_	p-SINE1-r422	_	transposon p-SINE1-r422				AB201729 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16125	_	p-SINE1-r423	_	transposon p-SINE1-r423				AB201730 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16126	_	p-SINE1-r431	_	transposon p-SINE1-r431				AB201731 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16127	_	p-SINE1-r432	_	transposon p-SINE1-r432				AB201732 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16128	_	p-SINE1-r433	_	transposon p-SINE1-r433				AB201733 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16129	_	p-SINE1-r441	_	transposon p-SINE1-r441				AB201734 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16130	_	p-SINE1-r442	_	transposon p-SINE1-r442				AB201735 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16131	_	p-SINE1-r443	_	transposon p-SINE1-r443				AB201736 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16132	_	p-SINE1-r444	_	transposon p-SINE1-r444				AB201737 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16133	_	p-SINE1-r445	_	transposon p-SINE1-r445				AB201738 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16134	_	p-SINE1-r446	_	transposon p-SINE1-r446				AB201739 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16135	_	p-SINE1-r447	_	transposon p-SINE1-r447				AB201740 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16136	_	p-SINE1-r448	_	transposon p-SINE1-r448				AB201741 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16137	_	p-SINE1-r449	_	transposon p-SINE1-r449				AB201742 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16138	_	p-SINE1-r450	_	transposon p-SINE1-r450				AB201743 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16139	_	p-SINE1-r451	_	transposon p-SINE1-r451				AB201744 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16140	_	p-SINE1-r452	_	transposon p-SINE1-r452				AB201745 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16141	_	p-SINE1-r510	_	transposon p-SINE1-r510					 Other						GO:0032196 - transposition		
16142	GRAN1	Gran1	GYPSY TYPE RETROTRANSPOSON GRAN1	Ty3/gypsy LTR retrotransposon Gran1, Ty-3-gypsy retrotransposon Gran1					 Other						GO:0032196 - transposition		
16143	GRAN2	Gran2	GYPSY TYPE RETROTRANSPOSON GRAN2	Ty3/gypsy LTR retrotransposon Gran2, Ty-3-gypsy retrotransposon Gran2				EF187427.	 Other						GO:0032196 - transposition		
16144	GRAN3	Gran3	GYPSY TYPE RETROTRANSPOSON GRAN3	Ty3/gypsy LTR retrotransposon Gran3, Ty-3-gypsy retrotransposon Gran3				EF187429.	 Other						GO:0032196 - transposition		
16145	GRAN4	Gran4	GYPSY TYPE RETROTRANSPOSON GRAN4	Ty3/gypsy LTR retrotransposon Gran4, Ty-3-gypsy retrotransposon Gran4					 Other						GO:0032196 - transposition		
16146	CASSANDRA	Cassandra	RETROTRANSPOSON CASSANDRA	Cassandra retrotransposon, retrotransposon Cassandra				a group of TRIMs (terminal-repeat retrotransposons in miniature). HM481419 (O. glaberrima), HM481419 (O. minuta).	 Other						GO:0032196 - transposition		
16147	_		_	5S RNA, Cassandra 5S RNA				5S RNA sequence in Cassandra retrotransposon.									
16148	_	OsSN1-1	_	Oryza sativa SINE1-1, retrotransposon OsSN1-1				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16149	_	OsSN1-2	_	Oryza sativa SINE1-2, retrotransposon OsSN1-2				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16150	_	OsSN1-6	_	Oryza sativa SINE1-6, retrotransposon OsSN1-6				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16151	_	OsSN1-10	_	Oryza sativa SINE1-10, retrotransposon OsSN1-10				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16152	_	OsSN1-12	_	Oryza sativa SINE1-12, retrotransposon OsSN1-12				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16153	_	OsSN1-13	_	Oryza sativa SINE1-13, retrotransposon OsSN1-13				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16154	_	OsSN1-25	_	Oryza sativa SINE1-25, retrotransposon OsSN1-25				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16155	_	OsSN1-27	_	Oryza sativa SINE1-27, retrotransposon OsSN1-27				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16156	_	OsSN1-37	_	Oryza sativa SINE1-37, retrotransposon OsSN1-37				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16157	_	OsSN1-51	_	Oryza sativa SINE1-51, retrotransposon OsSN1-51				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16158	_	OsSN1-61	_	Oryza sativa SINE1-61, retrotransposon OsSN1-61				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16159	_	OsSN2-1	_	Oryza sativa SINE2-1, retrotransposon OsSN2-1				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16160	_	OsSN2-2	_	Oryza sativa SINE2-2, retrotransposon OsSN2-2				AB427155 (OsSN2 consensus sequence). AB427158 (O. barthii SINE:OsSN2-2 DNA).	 Other						GO:0032196 - transposition		
16161	_	OsSN2-7	_	Oryza sativa SINE2-7, retrotransposon OsSN2-7				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16162	_	OsSN2-12	_	Oryza sativa SINE2-12, retrotransposon OsSN2-12				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16163	_	OsSN2-14	_	Oryza sativa SINE2-14, retrotransposon OsSN2-14				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16164	_	OsSN2-30	_	Oryza sativa SINE2-30, retrotransposon OsSN2-30				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16165	_	OsSN2-50	_	Oryza sativa SINE2-50, retrotransposon OsSN2-50				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16166	_	OsSN2-8	_	Oryza sativa SINE2-8, retrotransposon OsSN2-8				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16167	_	OsSN3-1	_	Oryza sativa SINE3-1, retrotransposon OsSN3-1				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16168	_	OsSN3-30	_	Oryza sativa SINE3-30, retrotransposon OsSN3-30				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16169	_	OsSN3-42	_	Oryza sativa SINE3-42, retrotransposon OsSN3-42				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16170	_	OsSN3-59	_	Oryza sativa SINE3-59, retrotransposon OsSN3-59				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16171	_	OsSN3-69	_	Oryza sativa SINE3-69, retrotransposon OsSN3-69				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16172	_	OsSN3-76	_	Oryza sativa SINE3-76, retrotransposon OsSN3-76				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16173	_	OsSN3-80	_	Oryza sativa SINE3-80, retrotransposon OsSN3-80				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16174	_	OsSN3-81	_	Oryza sativa SINE3-81, retrotransposon OsSN3-81				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16175	_	OsSN3-89	_	Oryza sativa SINE3-89, retrotransposon OsSN3-89				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16176	TAS3A1	TAS3a1	TRANS-ACTING siRNA3A1	TRANS-ACTING siRNA3a1				EU293143. GQ420188-GQ420228, HM140145, HM140146 (O. sativa, O. rufipogon, O. barthii).	 Other						GO:0016246 - RNA interference		
16177	TAS3B1	TAS3b1, OsTAS3b1, OsTAS3a, TAS3a	TRANS-ACTING siRNA3B1	TRANS-ACTING siRNA3b1, Trans-Acting Short RNA precursor 3a				EU293144. GQ420308-GQ420345, HM140151 (O. sativa, O. rufipogon, O. barthii). OsTAS3a in Lu et al. 2018.	 Vegetative organ - Root,  Other						GO:0010311 - lateral root formation, GO:0016246 - RNA interference		
16178	TAS3B2	TAS3b2	TRANS-ACTING siRNA3B2	TRANS-ACTING siRNA3b2				EU293145. GQ420289-GQ420307, HM140147-HM140150.	 Other						GO:0016246 - RNA interference		
16179	MIR806I_AS	miR806i_as, osa-MIR806i_as	MICRORNA806HI_AS	MICRORNA806i_antisense strand	_		2	miRBASE accession: none. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
16180	MIR806J_AS	miR806j_as, osa-MIR806j_as	MICRORNA806HJ_AS	MICRORNA806j_antisense strand	_		10	miRBASE accession: none. Predicted target(s): Os03g0306800, Os09g0511900, Os03g0839800, Os01g0963600, Os04g0178300, Os09g0482640, Os11g0547000.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
16181	MIR812G	miR812g, osa-miR812g, osa-MIR812g	MICRORNA812G	MICRORNA812g osa-miRNA812g	_		4	miRBASE accession: MI0008296. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.LM381061	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
16182	_		_	CCAAT transcription factor, Histone H2A2			7	HQ858808. Q6ZL42. D16048.	 Other	Os07g0545400	LOC_Os07g36140.1				GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0006334 - nucleosome assembly, GO:0003677 - DNA binding		
16183	_	R2R3-MYB	_	MYB-related transcription factor			5	HQ858811.	 Other	Os05g0589400	LOC_Os05g51160.2, LOC_Os05g51160.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16184	_		_	PLATZ transcription factor			2	HQ858812. 	 Other	Os02g0692700	LOC_Os02g46610.1						
16185	_	R2R3-MYB, OsMYB55/61-L, MYB55/61-L, OsMYB55, OsMYB61-L, MYB55, MYB61-L, OsMYB61L, MYB61L	_	MYB transcription factor 55/61L			5	HQ858815. LOC_Os05g04820.	 Other	Os05g0140100	LOC_Os05g04820.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16186	_		_	DDT transcription factor			1	HQ858814. 	 Other	Os01g0672300	LOC_Os01g48180.1				GO:0003677 - DNA binding		
16187	_		_	C2H2 transcription factor			3	HQ858817.	 Other	Os03g0239300	LOC_Os03g13600.2, LOC_Os03g13600.1				GO:0046872 - metal ion binding		
16188	_	R2R3-MYB	_	MYB transcription factor			7	HQ858821.	 Other	Os07g0688200	LOC_Os07g48870.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16189	_	Edf	_	MBF1 transcription factor, Endothelial differentiation factor			8	HQ858822. LOC_Os08g27850.	 Other	Os08g0366100	LOC_Os08g27850.2, LOC_Os08g27850.1				GO:0005737 - cytoplasm, GO:0003713 - transcription coactivator activity, GO:0043565 - sequence-specific DNA binding		
16190	BSRD1	ZFP36, OsZFP36, OsBSRD1, Bsr-d1, bsr-d1	BROAD-SPECTRUM RESISTANCE DIGU 1 	zinc finger protein 36, broad-spectrum resistance Digu 1			3	LOC_Os03g32230. HQ858823. AAP51130 (AY295345). C2H2 transcription factor. C2H2-type zinc finger protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0437200	LOC_Os03g32230.1				GO:0009738 - abscisic acid mediated signaling, GO:0016209 - antioxidant activity, GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus, GO:0046872 - metal ion binding, GO:0009845 - seed germination	TO:0000168 - abiotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content	PO:0007057 - 0 seed germination stage 
16192	_	R2R3-MYB	_	MYB transcription factor			9	LOC_Os09g36730.1 HQ858827. AU184006. GO:2000762: regulation of phenylpropanoid metabolic process. myeloblastosis (MYB) family transcription factor.	 Tolerance and resistance - Disease resistance,  Other	Os09g0538400	LOC_Os09g36730.1				GO:0009753 - response to jasmonic acid stimulus, GO:0010224 - response to UV-B, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0051607 - defense response to virus	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance	
16193	_		_	MYB transcription factor			1	HQ858828. 	 Other	Os01g0142500	LOC_Os01g04930.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16194	SAP16	OsSAP16	STRESS ASSOCIATED PROTEIN GENE 16	C2H2 transcription factor, stress associated protein 16, stress-associated protein 16	STRESS ASSOCIATED PROTEIN 16	sap16-1, sap16-2, sap16-3	7	HQ858831. Q0D5B9. LOC_Os07g38240. TO:0000748: leaf anatomy and morphology trait.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other	Os07g0569700	LOC_Os07g38240.1				GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0010118 - stomatal movement, GO:0006950 - response to stress, GO:0010109 - regulation of photosynthesis, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0008270 - zinc ion binding, GO:0009845 - seed germination	TO:0000352 - plant dry weight, TO:0006001 - salt tolerance, TO:0000164 - stress trait, TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance, TO:0001027 - net photosynthetic rate, TO:0000043 - root anatomy and morphology trait, TO:0000207 - plant height, TO:0000457 - total biomass yield, TO:0000303 - cold tolerance, TO:0000430 - germination rate	
16195	_		_	MYB transcription factor			8	HQ858840.	 Other	Os08g0510700	LOC_Os08g39980.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16197	_	OsARID1, ARID1	_	ARID transcription factor, AT-rich Interaction Domain-containing protein 1			2	HQ858845. LOC_Os02g27060. ARID protein, HMG subfamily.	 Other	Os02g0469900	LOC_Os02g27060.2, LOC_Os02g27060.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0016740 - transferase activity		
16198	_		_	HMG transcription factor			4	HQ858874.	 Other	Os04g0564600	LOC_Os04g47690.3, LOC_Os04g47690.2, LOC_Os04g47690.1						
16199	_		_	ABIVP1 transcription factor			5	HQ858877. Q5KQI4.	 Other	Os05g0481400	LOC_Os05g40280.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
16200	_	Adh3	_	Alcohol dehydrogenase 3, alcohol dehydrogenase-3			11	FJ266019-FJ266028 (indica and other wild rice species).	 Biochemical character	Os11g0210600	LOC_Os11g10520.3, LOC_Os11g10520.2, LOC_Os11g10520.1				GO:0005886 - plasma membrane, GO:0016491 - oxidoreductase activity, GO:0008270 - zinc ion binding, GO:0046686 - response to cadmium ion, GO:0001666 - response to hypoxia, GO:0009651 - response to salt stress, GO:0005829 - cytosol		
16201	_	RZ53	_				11	FJ266019-FJ266028 (indica and other wild rice species).		Os11g0210201	LOC_Os11g10470.1						
16202	_	NifS	_				11	FJ266019-FJ266028 (indica and other wild rice species).	 Biochemical character	Os11g0209900 					GO:0003824 - catalytic activity, GO:0030170 - pyridoxal phosphate binding		
16203	_	OsFbox594, Os_F0295, Fbox-1	_	F-box family-1, F-box protein 594			11	LOC_Os11g10400. FJ266019-FJ266028 (indica and other wild rice species). Fbox-1 (J11-1: japonica) in Ammiraju et al. 2008. Os_F0295 in Hua et al. 2011.		Os11g0209600	LOC_Os11g10400.2, LOC_Os11g10400.1						
16204	_		_	F-box family-2			11	FJ266019-FJ266028 (indica and other wild rice species).									
16205	_		_	F-box family-3			11	FJ266019-FJ266028 (indica and other wild rice species).									
16206	_		_	F-box family-4			11	FJ266019-FJ266028 (indica and other wild rice species). 									
16207	_	OsFbox592, Os_F0128, Fbox-4	_	F-box protein 592, F-box family-4			11	LOC_Os11g10340. FJ266019-FJ266028 (indica and other wild rice species). Fbox-4 (J11-4: japonica) in Ammiraju et al. 2008. Os_F0128 in Hua et al. 2011.		Os11g0209200	LOC_Os11g10340.1						
16208	_	OsFbox591, Os_F0435, Fbox-5	_	F-box family-5, F-box protein 591			11	LOC_Os11g10330. FJ266019-FJ266028 (indica and other wild rice species). Fbox-5 (J11-5: japonica) in Ammiraju et al. 2008. Os_F0435 in Hua et al. 2011.		Os11g0209100	LOC_Os11g10330.1						
16209	_		_	F-box family-7 pseudogene			11	FJ266019-FJ266028 (indica and other wild rice species). 									
16210	_		_	F-box family-8			11	FJ266019-FJ266028 (indica and other wild rice species). 									
16211	_		_	S-domain receptor-like protein kinase family-1, SR kinase			11	FJ266019-FJ266028 (indica and other wild rice species). 		Os11g0208800	LOC_Os11g10290.1				GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity		
16212	_		_	S-domain receptor-like protein kinase family-2 pseudogene, SR kinase pseudogene			11	FJ266019-FJ266028 (indica and other wild rice species). 							GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity		
16213	_		_	S-domain receptor-like protein kinase family-3, SR kinase			11	FJ266019-FJ266028 (indica and other wild rice species). 							GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen		
16214	_		_	NBS-LRR disease resistance protein, NBS-LRR family			11	FJ266019-FJ266028 (indica and other wild rice species). 									
16215	FRETRO1	FRetro1	GYPSY TYPE RETROTRANSPOSON FRETRO1	Ty3-gypsy (Metaviridae) retroelement FRetro1, Ty3/gypsy LTR retrotransposon FRetro1			8	GU369677 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16216	FRETRO2	FRetro2	GYPSY TYPE RETROTRANSPOSON FRETRO2	Ty3-gypsy (Metaviridae) retroelement FRetro2, Ty3/gypsy LTR retrotransposon FRetro2			8	GU369678 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16217	FRETRO3	FRetro3	GYPSY TYPE RETROTRANSPOSON FRETRO3	Ty3-gypsy (Metaviridae) retroelement FRetro3, Ty3/gypsy LTR retrotransposon FRetro3			8	GU369679 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16218	FRETRO4	FRetro4	GYPSY TYPE RETROTRANSPOSON FRETRO4	Ty3-gypsy (Metaviridae) retroelement FRetro4, Ty3/gypsy LTR retrotransposon FRetro4			8	GU369680 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16219	FRETRO5	FRetro5	GYPSY TYPE RETROTRANSPOSON FRETRO5	Ty3-gypsy (Metaviridae) retroelement FRetro5, Ty3/gypsy LTR retrotransposon FRetro5			8	GU369681 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16220	TAS3A2	TAS3a2	TRANS-ACTING siRNA3A2	TRANS-ACTING siRNA3a2				GQ420229-GQ420288 (O. sativa, O. rufipogon, O. barthii).	 Other						GO:0016246 - RNA interference		
16221	_		_				3	HM140152-HM140183 (O. sativa, O. rufipogon). miR166e target gene. LOC_Os03g56920.		Os03g0782100	LOC_Os03g56920.1						
16222	_		_				3	miR166e target gene. LOC_Os03g16320.		Os03g0269800	LOC_Os03g16320.1						
16223	_		_				12	a miRNA-like long hairpin AK120922 or siRNA AK120922 in Wang et al. 2010. GQ420092-GQ420134 (O. sativa, O. rufipogon).		Os12g0618400	LOC_Os12g42380.1						
16224	_		_				6	a miRNA-like long hairpin or siRNA in Wang et al. 2010. GQ420065-GQ420091, HM140135-HM140144 (O. sativa, O. barthii). LOC_Os06g21900.		Os06g0324300	LOC_Os06g21900.1						
16225	_	Nhp2	_	Nucleolar protein family A member 2, high-mobility group-like protein			6	AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). D15191.		Os06g0274200 	LOC_Os06g16290.1				GO:0005730 - nucleolus, GO:0003723 - RNA binding		
16226	_	NAA, OsATL4	_	neutral amino acid transporter, amino acid transporter-like 4			6	AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). LOC_Os06g16420.	 Biochemical character	Os06g0275800 	LOC_Os06g16420.3, LOC_Os06g16420.2, LOC_Os06g16420.1				GO:0005774 - vacuolar membrane, GO:0016021 - integral to membrane		
16227	_	kanadaptin	_	Adaptor protein kanadaptin			6	AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species).		Os06g0275900 	LOC_Os06g16430.1				GO:0016020 - membrane		
16228	_	Lip	_	leaf senescence protein			6	AP005813. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). Os06g0273500 or Os06g0273700. 		Os06g0273500/Os06g0273700 					GO:0016020 - membrane		
16229	_		_	importin 9			6	AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). 		Os06g0274100	LOC_Os06g16280.1				GO:0006886 - intracellular protein transport, GO:0005634 - nucleus		
16230	_	SEPK1	_	Somatic Embryogenesis Receptor Kinase 1, BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1			6	AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). LOC_Os06g16300.		Os06g0274300	LOC_Os06g16300.3, LOC_Os06g16300.1				GO:0016301 - kinase activity		
16231	_	AdIT	_	adenylate isopentenyl transferase			6	GQ407104 (O. granulata). 	 Biochemical character						GO:0005524 - ATP binding, GO:0016740 - transferase activity, GO:0008033 - tRNA processing		
16232	FRETRO64	FRetro64	RETROTRANSPOSON FRETRO64	retrotransposon FRetro64, LTR retrotransposon FRetro64				JN806224 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16233	FRETRO129	FRetro129, SMART	RETROTRANSPOSON FRETRO129	retrotransposon FRetro129, LTR retrotransposon FRetro129, FRetro129 homolog, small LTR retrotransposon				JN806223 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16234	_	osa-smRNA87	_	SMART-specific small RNA 87, SMART-specific sRNA 87					 Other								
16235	_	osa-smRNA1629	_	SMART-specific small RNA 1629, SMART-specific sRNA 1629					 Other								
16236	_	osa-smRNA11575	_	SMART-specific small RNA 11575, SMART-specific sRNA 11575					 Other								
16237	_	osa-smRNA15336	_	SMART-specific small RNA 15336, SMART-specific sRNA 15336					 Other								
16238	_	osa-smRNA26529	_	SMART-specific small RNA 26529, SMART-specific sRNA 26529					 Other								
16239	_	osa-smRNA27409	_	SMART-specific small RNA 27409, SMART-specific sRNA 27409					 Other								
16240	_	osa-smRNA28265	_	SMART-specific small RNA 28265, SMART-specific sRNA 28265					 Other								
16241	_	osa-smRNA41835	_	SMART-specific small RNA 41835, SMART-specific sRNA 41835					 Other								
16242	_	osa-smRNA55476	_	SMART-specific small RNA 55476, SMART-specific sRNA 55476					 Other								
16243	_	osa-smRNA60213	_	SMART-specific small RNA 60213, SMART-specific sRNA 60213					 Other								
16244	_	osa-smRNA73491	_	SMART-specific small RNA 73491, SMART-specific sRNA 73491					 Other								
16245	_	osa-smRNA83486	_	SMART-specific small RNA 83486, SMART-specific sRNA 83486					 Other								
16246	_	osa-smRNA95248	_	SMART-specific small RNA 95248, SMART-specific sRNA 95248					 Other								
16247	_	osac11smRNA288	_	SMART-specific small RNA osac11smRNA288, SMART-specific sRNA osac11smRNA288					 Other								
16248	_	osa-smRNA96292	_	SMART-specific small RNA 96292, SMART-specific sRNA 96292					 Other								
16249	_	osac1-smRNA38	_	SMART-specific small RNA osac1-smRNA38, SMART-specific sRNA osac1-smRNA38					 Other								
16250	_	osa-smRNA109754	_	SMART-specific small RNA 109754, SMART-specific sRNA 109754					 Other								
16251	_	osa-smRNA117590	_	SMART-specific small RNA 117590, SMART-specific sRNA 117590					 Other								
16252	_	osac1-smRNA25	_	SMART-specific small RNA osac1-smRNA25, SMART-specific sRNA osac1-smRNA25					 Other								
16253	_	osa-smRNA129401	_	SMART-specific small RNA 129401, SMART-specific sRNA 129401					 Other								
16254	_	osa-smRNA131555	_	SMART-specific small RNA 131555, SMART-specific sRNA 131555					 Other								
16255	MGING	mGing	MGING ELEMENT	mGing element, miniature Ging element				a member of Gaijin-like miniature inverted repeat transposable element (Gaijin-like MITEs), a sub-class of Tourist-like MITE. mGing was found in the 4th intron of the PLRRP gene (Os01g0140400).	 Other						GO:0032196 - transposition		
16256	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin			3	JN016861.	 Other						GO:0032196 - transposition		
16257	_	PLRRP	_	putative leucine rich repeat protein			1	LOC_Os01g04720.		Os01g0140400	LOC_Os01g04720.2, LOC_Os01g04720.1				GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005802 - trans-Golgi network, GO:0016301 - kinase activity, GO:0005768 - endosome, GO:0005794 - Golgi apparatus		
16258	_		_	Pi2/9 homolog			6	LOC_Os06g17950.		Os06g0287500	LOC_Os06g17950.1				GO:0043531 - ADP binding		
16259	_		_	Pi2/9 homolog			6	LOC_Os06g17970.		Os06g0287700	LOC_Os06g17970.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
16260	_		_	Pi2/9 homolog			6	LOC_Os06g17930.		Os06g0287200	LOC_Os06g17930.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
16262	_		_	Pi2/9 homolog			6	LOC_Os06g17920-pseudo.		Os06g0287000	LOC_Os06g17920.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
16263	MU4-2	OsMu4-2	MU-LIKE TRANSPOSABLE ELEMENT 4-2	Mu-like transposable element 4-2			1	maize MuDR-like transposable element. AF433636. OsMu4-2 carries a MURA-like transposase pseudogene.	 Other								
16264	MU10-1	OsMu10-1	MU-LIKE TRANSPOSABLE ELEMENT 10-1	Mu-like transposable element 10-1				maize MuDR-like transposable element. AF433637. 	 Other								
16265	MU79843	OsMu79843	MU-LIKE TRANSPOSABLE ELEMENT 79843	Mu-like transposable element 79843			10	maize MuDR-like transposable element.	 Other								
16266	MU74283	OsMu74283	MU-LIKE TRANSPOSABLE ELEMENT 74283	Mu-like transposable element 74283			10	maize MuDR-like transposable element.	 Other								
16267	MU03854	OsMu03854	MU-LIKE TRANSPOSABLE ELEMENT 03854	Mu-like transposable element 03854			1	maize MuDR-like transposable element.	 Other								
16268	MU91665	OsMu91665	MU-LIKE TRANSPOSABLE ELEMENT 91665	Mu-like transposable element 91665			10	maize MuDR-like transposable element.	 Other								
16269	MU90882	OsMu90882	MU-LIKE TRANSPOSABLE ELEMENT 90882	Mu-like transposable element 90882			3	maize MuDR-like transposable element.	 Other								
16270	MU03578	OsMu03578	MU-LIKE TRANSPOSABLE ELEMENT 03578	Mu-like transposable element 03578			1	maize MuDR-like transposable element.	 Other								
16272	_		_				8	C98506. RMu1-A23 (accession no. AB023047) is 99% identical to a cDNA from rice (accession no. C98506). Os08g0194400 (in Rap1 (build3), Rap2 (build4)).  LOC_Os08g09520. F-box protein.	 Biochemical character		LOC_Os08g09520				GO:0006313 - transposition, DNA-mediated, GO:0008270 - zinc ion binding, GO:0004803 - transposase activity, GO:0003677 - DNA binding		
16273	_	Os-MuDR	_	MuDR-like element				AB012392.	 Biochemical character						GO:0032196 - transposition, GO:0006280 - mutagenesis		
16274	_	Os-MURA	_	Os-MURA protein				AB012392. Os-MuDR encoding a putative Os-MURA protein.	 Biochemical character						GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
16275	_	X1, OsFDML3, FDML3	_	transcription factor X1, FACTOR OF DNA METHYLATION LIKE 3			1	LOC_Os01g44230. GO:0080188: RNA-directed DNA methylation.		Os01g0633200	LOC_Os01g44230.2, LOC_Os01g44230.1						
16276	TET13	OsSAP, OsTET13	TETRASPANIN 13	senescence associated protein, tetraspanin 13	TETRASPANIN 13		9	AY224518. LOC_Os09g25760.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os09g0425900 	LOC_Os09g25760.1				GO:0005886 - plasma membrane, GO:0010150 - leaf senescence, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0000249 - leaf senescence, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
16277	GLYR1	OsGLYR1	GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 1 	gamma hydroxybutyrate dehydrogenase, glyoxylate/succinic semialdehyde reductase 1	GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 1 		2	AY224558. LOC_Os02g35500.	 Biochemical character	Os02g0562700	LOC_Os02g35500.1				GO:0005829 - cytosol, GO:0051287 - NAD or NADH binding, GO:0050662 - coenzyme binding, GO:0008442 - 3-hydroxyisobutyrate dehydrogenase activity, GO:0006979 - response to oxidative stress, GO:0006573 - valine metabolic process, GO:0006098 - pentose-phosphate shunt, GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity, GO:0003858 - 3-hydroxybutyrate dehydrogenase activity		
16278	_	SIP24	_	myosin, SKIP interacting protein 24, SKIPa-interacting protein 24, SKIPa-interacting protein 24			10	AY224548. EU368714. LOC_Os10g36060. 		Os10g0504600	LOC_Os10g36060.1				GO:0007049 - cell cycle, GO:0005856 - cytoskeleton		
16279	_		_	PHD zinc finger protein			3	AY224545.		Os03g0143600	LOC_Os03g04980.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0016568 - chromatin modification		
16280	_		_	heavy meromyosin-like protein			3	AY224542.		Os03g0789200	LOC_Os03g57530.1						
16281	_	SIP6	_	muscle derived-like protein, SKIP interacting protein 6, SKIPa-interacting protein 6, SKIPa-interacting protein 6			3	AY224541. EU368696. LOC_Os03g17930. 		Os03g0288600	LOC_Os03g17930.3, LOC_Os03g17930.2, LOC_Os03g17930.1				GO:0007049 - cell cycle, GO:0005856 - cytoskeleton		
16282	_	OsPUB2	_	arm repeat protein, plant U-box-containing protein 2, U-box protein 2			5	AY224537. class II PUB protein (U-box + ARM/HEAT). LOC_Os05g39930. EST: D23908, AU164828,AI096152, C73275.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0476700	LOC_Os05g39930.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance	
16283	_	OsPUB3, PUB3	_	arm repeat cell adhesion protein, arm repeat protein, plant U-box-containing protein 3, U-box protein 3			1	AY224536. class II PUB protein (U-box + ARM/HEAT). LOC_Os01g60860. EST: BI809145, AU070503,CB631190, D48112, AU165954.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0823900	LOC_Os01g60860.1				GO:0009409 - response to cold, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0005829 - cytosol	TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance	
16284	MC5	OsMC5	METACASPASE 5	latex-abundant protein, latex-abundant protein-like protein, Metacaspase 5	METACASPASE 5		5	AY224533.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0496500	LOC_Os05g41670.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity	
16285	_	HS1	_	putative nematode-resistance protein			1	AY224522.		Os01g0855600	LOC_Os01g63690.1				GO:0009751 - response to salicylic acid stimulus, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0006979 - response to oxidative stress		
16286	_		_	development protein			6	AY224520.		Os06g0643300	LOC_Os06g43590.4, LOC_Os06g43590.3, LOC_Os06g43590.2				GO:0000578 - embryonic axis specification, GO:0009793 - embryonic development ending in seed dormancy, GO:0015031 - protein transport, GO:0040007 - growth, GO:0032509 - endosome transport via multivesicular body sorting pathway		
16287	_		_	leucine-rich repeat kinase			10	AY224517.		Os10g0389800	LOC_Os10g25090.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane		
16288	RLCK377	OsRLCK377	RECEPTOR-LIKE CYTOPLASMIC KINASE 377	Receptor-like Cytoplasmic Kinase 377	RECEPTOR-LIKE CYTOPLASMIC KINASE 377		3	AY224516. receptor kinase. LOC_Os03g12238/LOC_Os03g12250.		Os03g0223000	LOC_Os03g12250.1, LOC_Os03g12238.1				GO:0005524 - ATP binding, GO:0009505 - plant-type cell wall, GO:0009506 - plasmodesma, GO:0009610 - response to symbiotic fungus, GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity		
16289	_	NP70	_				8	JQ415155-JQ415261 (wild rice species).		Os08g0427300	LOC_Os08g33076.1						
16290	_	R2R3-MYB	_				1	AY459335, AU082180. AU183276.	 Other	Os01g0874300	LOC_Os01g65370.1				GO:0009631 - cold acclimation, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0003682 - chromatin binding, GO:0005634 - nucleus		
16291	_	R2R3-MYB, OsGL1A, GL1A	_	GLABRA1A, GLABRA 1A			8	AY459336, CB653197. LOC_Os08g43550. a homologue of Arabidopsis transcription factor GL1.	 Other	Os08g0549000	LOC_Os08g43550.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16292	_	R2R3-MYB	_				12	AY459337, CB621846.	 Other	Os12g0564100	LOC_Os12g37690.1				GO:0003677 - DNA binding		
16293	_	R2R3-MYB	_				1	AY459339, C72014. CB682826.	 Other	Os01g0191900	LOC_Os01g09590.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16294	_	R2R3-MYB	_				6	AY459342, AF474134.	 Other	Os06g0112700	LOC_Os06g02250.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16296	_	R2R3-MYB	_				5	D88617.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0429900	LOC_Os05g35500.1				GO:0009753 - response to jasmonic acid stimulus, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat	TO:0000432 - temperature response trait	
16297	_	R2R3-MYB	_				4	CA753778.	 Other	Os04g0389600	LOC_Os04g32000.2, LOC_Os04g32000.1						
16298	_	R2R3-MYB	_				2	AU062529. AB010834.	 Other	Os02g0641300	LOC_Os02g42850.2, LOC_Os02g42850.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16299	_	R2R3-MYB	_				7	GO: 0080167: response to karrikin.	 Other	Os07g0629000	LOC_Os07g43580.1				GO:0003682 - chromatin binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0009723 - response to ethylene stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0003677 - DNA binding		
16300	_	R2R3-MYB, OsMYB102, MYB102	_	Myb transcription factor 102		osmyb102	6	GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000031: regulation of salicylic acid mediated signaling pathway. GO:1900055: regulation of leaf senescence.	 Vegetative organ - Leaf,  Other	Os06g0637500	LOC_Os06g43090.1				GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0010150 - leaf senescence, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0046686 - response to cadmium ion, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0010200 - response to chitin, GO:0009739 - response to gibberellin stimulus, GO:0009414 - response to water deprivation	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
16301	_	R2R3-MYB, OsEnS-23	_	endosperm-specific gene 23			1	LOC_Os01g74590.	 Other	Os01g0977300	LOC_Os01g74590.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16302	_	R2R3-MYB	_				6		 Other	Os06g0258000	LOC_Os06g14670.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16303	MYB20	OsMYB20	_	myb transcription factor 20			2	R2R3-MYB.	 Other	Os02g0732600	LOC_Os02g49986.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16304	_	R2R3-MYB	_				9		 Other	Os09g0106700	LOC_Os09g01960.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16305	_	R2R3-MYB, OsMYB4P	_				11	an R2R3-type MYB transcriptional activator. TO:0020102: phosphate content.	 Other	Os11g0558200	LOC_Os11g35390.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0055062 - phosphate ion homeostasis		
16306	_	R2R3-MYB	_				4		 Other	Os04g0508500	LOC_Os04g42950.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16307	_	R2R3-MYB	_				4		 Other	Os04g0532800	LOC_Os04g45020.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16308	_	R2R3-MYB	_				7		 Other	Os07g0627300	LOC_Os07g43420.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16309	_	R2R3-MYB	_				12	AK107214. CA767403. Q4JL76.	 Other	Os12g0567300	LOC_Os12g37970.3, LOC_Os12g37970.2, LOC_Os12g37970.1				GO:0003682 - chromatin binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
16310	_	R2R3-MYB	_				12		 Other	Os12g0175400	LOC_Os12g07640.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16311	_	R2R3-MYB	_				3	AAL84631. AF474141.	 Other						GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16312	_	R2R3-MYB	_				3	AAL84626. AF474136.	 Other						GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16313	_	R2R3-MYB	_				9	AAL84627. AF474137.	 Other						GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16314	RIM2-M1	Rim2-M1	TRANSPOSON CACTG ELEMENT RIM2-M1	transposon CACTG element Rim2-M1			1	AP003446: 28,606-28,879.	 Other						GO:0032196 - transposition		
16315	RIM2-M2	Rim2-M2	TRANSPOSON CACTG ELEMENT RIM2-M2	transposon CACTG element Rim2-M2			10	AC087545: 61,148-61,523.	 Other						GO:0032196 - transposition		
16316	RIM2-M3	Rim2-M3	TRANSPOSON CACTG ELEMENT RIM2-M3	transposon CACTG element Rim2-M3			10	AC079852: 154,681-155,629.	 Other						GO:0032196 - transposition		
16317	RIM2-M4	Rim2-M4	TRANSPOSON CACTG ELEMENT RIM2-M4	transposon CACTG element Rim2-M4			3	AC091123: 37,171-38,121.	 Other						GO:0032196 - transposition		
16318	RIM2-M5	Rim2-M5	TRANSPOSON CACTG ELEMENT RIM2-M5	transposon CACTG element Rim2-M5			5	AC073405: 42,916-43,930.	 Other						GO:0032196 - transposition		
16319	RIM2-M6	Rim2-M6	TRANSPOSON CACTG ELEMENT RIM2-M6	transposon CACTG element Rim2-M6			1	AP002865: 73,090-74,112.	 Other						GO:0032196 - transposition		
16320	RIM2-M7	Rim2-M7	TRANSPOSON CACTG ELEMENT RIM2-M7	transposon CACTG element Rim2-M7			11	AP003050: 54,222-55,246.	 Other						GO:0032196 - transposition		
16321	RIM2-M8	Rim2-M8	TRANSPOSON CACTG ELEMENT RIM2-M8	transposon CACTG element Rim2-M8			5	AP001111: 11,561-12,594.	 Other						GO:0032196 - transposition		
16322	RIM2-M9	Rim2-M9	TRANSPOSON CACTG ELEMENT RIM2-M9	transposon CACTG element Rim2-M9			10	AC091735: 1,541-2,575.	 Other						GO:0032196 - transposition		
16323	RIM2-M10	Rim2-M10	TRANSPOSON CACTG ELEMENT RIM2-M10	transposon CACTG element Rim2-M10			10	AC074105: 20,350-21,398.	 Other						GO:0032196 - transposition		
16324	RIM2-M11	Rim2-M11	TRANSPOSON CACTG ELEMENT RIM2-M11	transposon CACTG element Rim2-M11			1	AP003725: 56,488-57,549.	 Other						GO:0032196 - transposition		
16325	RIM2-M12	Rim2-M12	TRANSPOSON CACTG ELEMENT RIM2-M12	transposon CACTG element Rim2-M12			1	AP003853: 13,867-14,955.	 Other						GO:0032196 - transposition		
16326	RIM2-M13	Rim2-M13	TRANSPOSON CACTG ELEMENT RIM2-M13	transposon CACTG element Rim2-M13			3	AC079853: 19,643-18,551.	 Other						GO:0032196 - transposition		
16327	RIM2-M14	Rim2-M14	TRANSPOSON CACTG ELEMENT RIM2-M14	transposon CACTG element Rim2-M14			3	AC093017: 27,449-28,544.	 Other						GO:0032196 - transposition		
16328	RIM2-M15	Rim2-M15	TRANSPOSON CACTG ELEMENT RIM2-M15	transposon CACTG element Rim2-M15			10	AC074283: 86,665-87,762.	 Other						GO:0032196 - transposition		
16329	RIM2-M16	Rim2-M16	TRANSPOSON CACTG ELEMENT RIM2-M16	transposon CACTG element Rim2-M16			1	AP002914: 104,160-105,259.	 Other						GO:0032196 - transposition		
16330	RIM2-M17	Rim2-M17	TRANSPOSON CACTG ELEMENT RIM2-M17	transposon CACTG element Rim2-M17			10	AC073391: 140,926-142,041.	 Other						GO:0032196 - transposition		
16331	RIM2-M18	Rim2-M18	TRANSPOSON CACTG ELEMENT RIM2-M18	transposon CACTG element Rim2-M18			10	AC087550: 107,893-109,009.	 Other						GO:0032196 - transposition		
16332	RIM2-M19	Rim2-M19	TRANSPOSON CACTG ELEMENT RIM2-M19	transposon CACTG element Rim2-M19			3	AC084767: 85,163-86,289.	 Other						GO:0032196 - transposition		
16333	RIM2-M20	Rim2-M20	TRANSPOSON CACTG ELEMENT RIM2-M20	transposon CACTG element Rim2-M20			10	AC073393: 98,460-99,588.	 Other						GO:0032196 - transposition		
16334	RIM2-M21	Rim2-M21	TRANSPOSON CACTG ELEMENT RIM2-M21	transposon CACTG element Rim2-M21			1	AP003345: 99,33-11,062.	 Other						GO:0032196 - transposition		
16335	RIM2-M22	Rim2-M22	TRANSPOSON CACTG ELEMENT RIM2-M22	transposon CACTG element Rim2-M22				AC18884: 145,261-146,394.	 Other						GO:0032196 - transposition		
16336	RIM2-M23	Rim2-M23	TRANSPOSON CACTG ELEMENT RIM2-M23	transposon CACTG element Rim2-M23			10	AC093181: 64,197-65,360.	 Other						GO:0032196 - transposition		
16337	RIM2-M24	Rim2-M24	TRANSPOSON CACTG ELEMENT RIM2-M24	transposon CACTG element Rim2-M24				AC18884: 62,618-63,790.	 Other						GO:0032196 - transposition		
16338	RIM2-M25	Rim2-M25	TRANSPOSON CACTG ELEMENT RIM2-M25	transposon CACTG element Rim2-M25			3	AC084767: 55,628-56,822.	 Other						GO:0032196 - transposition		
16339	RIM2-M26	Rim2-M26	TRANSPOSON CACTG ELEMENT RIM2-M26	transposon CACTG element Rim2-M26			1	AP001278: 117,799-119,009.	 Other						GO:0032196 - transposition		
16340	RIM2-M27	Rim2-M27	TRANSPOSON CACTG ELEMENT RIM2-M27	transposon CACTG element Rim2-M27			10	AC079936: 122,087-123,300.	 Other						GO:0032196 - transposition		
16341	RIM2-M28	Rim2-M28	TRANSPOSON CACTG ELEMENT RIM2-M28	transposon CACTG element Rim2-M28			3	AC084762: 122,316-123,536.	 Other						GO:0032196 - transposition		
16342	RIM2-M29	Rim2-M29	TRANSPOSON CACTG ELEMENT RIM2-M29	transposon CACTG element Rim2-M29			10	AC084884: 107,406-106,185.	 Other						GO:0032196 - transposition		
16343	RIM2-M30	Rim2-M30	TRANSPOSON CACTG ELEMENT RIM2-M30	transposon CACTG element Rim2-M30			3	AC104179: 70,280-71,504.	 Other						GO:0032196 - transposition		
16344	RIM2-M31	Rim2-M31	TRANSPOSON CACTG ELEMENT RIM2-M31	transposon CACTG element Rim2-M31			1	AP003281: 13,595-14,821.	 Other						GO:0032196 - transposition		
16345	RIM2-M32	Rim2-M32	TRANSPOSON CACTG ELEMENT RIM2-M32	transposon CACTG element Rim2-M32			1	AP003706: 22,512-23,738.	 Other						GO:0032196 - transposition		
16346	RIM2-M33	Rim2-M33	TRANSPOSON CACTG ELEMENT RIM2-M33	transposon CACTG element Rim2-M33			1	AP002855: 29,711-30,943.	 Other						GO:0032196 - transposition		
16347	RIM2-M34	Rim2-M34	TRANSPOSON CACTG ELEMENT RIM2-M34	transposon CACTG element Rim2-M34			1	AP003247: 65,653-66,892.	 Other						GO:0032196 - transposition		
16348	RIM2-M35	Rim2-M35	TRANSPOSON CACTG ELEMENT RIM2-M35	transposon CACTG element Rim2-M35			1	AP002070: 167,835-169,106.	 Other						GO:0032196 - transposition		
16349	RIM2-M36	Rim2-M36	TRANSPOSON CACTG ELEMENT RIM2-M36	transposon CACTG element Rim2-M36			1	AP002541: 7,494-8,765.	 Other						GO:0032196 - transposition		
16350	RIM2-M37	Rim2-M37	TRANSPOSON CACTG ELEMENT RIM2-M37	transposon CACTG element Rim2-M37			1	AP003330: 31,35-4,409.	 Other						GO:0032196 - transposition		
16351	RIM2-M38	Rim2-M38	TRANSPOSON CACTG ELEMENT RIM2-M38	transposon CACTG element Rim2-M38			10	AC091665: 78,897-80,202.	 Other						GO:0032196 - transposition		
16352	RIM2-M39	Rim2-M39	TRANSPOSON CACTG ELEMENT RIM2-M39	transposon CACTG element Rim2-M39			1	AP003546: 15,080-16,433.	 Other						GO:0032196 - transposition		
16353	RIM2-M40	Rim2-M40	TRANSPOSON CACTG ELEMENT RIM2-M40	transposon CACTG element Rim2-M40			3	AC090713: 86,699-88,072.	 Other						GO:0032196 - transposition		
16354	RIM2-M41	Rim2-M41	TRANSPOSON CACTG ELEMENT RIM2-M41	transposon CACTG element Rim2-M41			1	AP003209: 37,510-39,012.	 Other						GO:0032196 - transposition		
16355	RIM2-M42	Rim2-M42	TRANSPOSON CACTG ELEMENT RIM2-M42	transposon CACTG element Rim2-M42			1	AP003201: 75,445-76,955.	 Other						GO:0032196 - transposition		
16356	RIM2-M43	Rim2-M43	TRANSPOSON CACTG ELEMENT RIM2-M43	transposon CACTG element Rim2-M43			1	AP003434: 63,743-65,538.	 Other						GO:0032196 - transposition		
16357	RIM2-M44	Rim2-M44	TRANSPOSON CACTG ELEMENT RIM2-M44	transposon CACTG element Rim2-M44			1	AP003199: 32,734-34,819.	 Other						GO:0032196 - transposition		
16358	RIM2-M45	Rim2-M45	TRANSPOSON CACTG ELEMENT RIM2-M45	transposon CACTG element Rim2-M45			1	AP003074: 7,954-11,965.	 Other						GO:0032196 - transposition		
16359	RIM2-M46	Rim2-M46	TRANSPOSON CACTG ELEMENT RIM2-M46	transposon CACTG element Rim2-M46			1	AP003047: 129,597-133,758.	 Other						GO:0032196 - transposition		
16360	RIM2-M47	Rim2-M47	TRANSPOSON CACTG ELEMENT RIM2-M47	transposon CACTG element Rim2-M47			10	AC097447: 7,089-11,959.	 Other						GO:0032196 - transposition		
16361	RIM2-M48	Rim2-M48	TRANSPOSON CACTG ELEMENT RIM2-M48	transposon CACTG element Rim2-M48			10	AC025296: 125,672-130,726.	 Other						GO:0032196 - transposition		
16362	RIM2-M49	Rim2-M49	TRANSPOSON CACTG ELEMENT RIM2-M49	transposon CACTG element Rim2-M49			1	AP003105: 79,813-85,026.	 Other						GO:0032196 - transposition		
16363	RIM2-M50	Rim2-M50	TRANSPOSON CACTG ELEMENT RIM2-M50	transposon CACTG element Rim2-M50			1	AP003298: 20,070-25,457.	 Other						GO:0032196 - transposition		
16364	RIM2-M51	Rim2-M51	TRANSPOSON CACTG ELEMENT RIM2-M51	transposon CACTG element Rim2-M51			10	AC090482: 153,729-159,123.	 Other						GO:0032196 - transposition		
16365	RIM2-M52	Rim2-M52	TRANSPOSON CACTG ELEMENT RIM2-M52	transposon CACTG element Rim2-M52			1	AP002523: 23,301-28,729.	 Other						GO:0032196 - transposition		
16366	RIM2-M53	Rim2-M53	TRANSPOSON CACTG ELEMENT RIM2-M53	transposon CACTG element Rim2-M53, transposon Rim2 M53			1	AP003266: 76,530-82,252. BK000333.	 Other						GO:0032196 - transposition		
16367	RIM2-M54	Rim2-M54	TRANSPOSON CACTG ELEMENT RIM2-M54	transposon CACTG element Rim2-M54			1	AP003143: 76,766-82,584.	 Other						GO:0032196 - transposition		
16368	RIM2-M55	Rim2-M55	TRANSPOSON CACTG ELEMENT RIM2-M55	transposon CACTG element Rim2-M55			10	AC090441: 108,362-114,216.	 Other						GO:0032196 - transposition		
16369	RIM2-M56	Rim2-M56	TRANSPOSON CACTG ELEMENT RIM2-M56	transposon CACTG element Rim2-M56			1	AP003578: 126,041-134,114.	 Other						GO:0032196 - transposition		
16370	RIM2-M57	Rim2-M57	TRANSPOSON CACTG ELEMENT RIM2-M57	transposon CACTG element Rim2-M57			10	AC069324: 71,509-81,108.	 Other						GO:0032196 - transposition		
16371	RIM2-M58	Rim2-M58	TRANSPOSON CACTG ELEMENT RIM2-M58	transposon CACTG element Rim2-M58			10	AC112513: 76,657-86,361.	 Other						GO:0032196 - transposition		
16372	RIM2-M59	Rim2-M59	TRANSPOSON CACTG ELEMENT RIM2-M59	transposon CACTG element Rim2-M59			1	AP002871: 110,338-120,216.	 Other						GO:0032196 - transposition		
16373	RIM2-M60	Rim2-M60	TRANSPOSON CACTG ELEMENT RIM2-M60	transposon CACTG element Rim2-M60			3	AC079853: 101,573-111,923.	 Other						GO:0032196 - transposition		
16374	RIM2-M61	Rim2-M61	TRANSPOSON CACTG ELEMENT RIM2-M61	transposon CACTG element Rim2-M61			1	AP002070: 156,234-166,598.	 Other						GO:0032196 - transposition		
16375	RIM2-M62	Rim2-M62	TRANSPOSON CACTG ELEMENT RIM2-M62	transposon CACTG element Rim2-M62			10	AC078944: 103,373-113,841.	 Other						GO:0032196 - transposition		
16376	RIM2-M63	Rim2-M63	TRANSPOSON CACTG ELEMENT RIM2-M63	transposon CACTG element Rim2-M63			1	AP002484: 15,795-26,339.	 Other						GO:0032196 - transposition		
16377	RIM2-M64	Rim2-M64	TRANSPOSON CACTG ELEMENT RIM2-M64	transposon CACTG element Rim2-M64			1	AP003207: 98,458-109,013.	 Other						GO:0032196 - transposition		
16378	RIM2-M65	Rim2-M65	TRANSPOSON CACTG ELEMENT RIM2-M65	transposon CACTG element Rim2-M65			3	AC079830: 118,450-129,206.	 Other						GO:0032196 - transposition		
16379	RIM2-M66	Rim2-M66	TRANSPOSON CACTG ELEMENT RIM2-M66	transposon CACTG element Rim2-M66			10	AC068654: 66,037-77,014.	 Other						GO:0032196 - transposition		
16380	RIM2-M67	Rim2-M67	TRANSPOSON CACTG ELEMENT RIM2-M67	transposon CACTG element Rim2-M67			1	AP003197: 52,024-63,128.	 Other						GO:0032196 - transposition		
16381	RIM2-M68	Rim2-M68	TRANSPOSON CACTG ELEMENT RIM2-M68	transposon CACTG element Rim2-M68			1	AC011806: 47,182-36,166.	 Other						GO:0032196 - transposition		
16382	RIM2-M69	Rim2-M69	TRANSPOSON CACTG ELEMENT RIM2-M69	transposon CACTG element Rim2-M69			1	AP003432: 114,271-125,423.	 Other						GO:0032196 - transposition		
16383	RIM2-M70	Rim2-M70	TRANSPOSON CACTG ELEMENT RIM2-M70	transposon CACTG element Rim2-M70			1	AP003709: 97,208-108,418.	 Other						GO:0032196 - transposition		
16384	RIM2-M71	Rim2-M71	TRANSPOSON CACTG ELEMENT RIM2-M71	transposon CACTG element Rim2-M71			10	AC091724: 16,971-28,245.	 Other						GO:0032196 - transposition		
16385	RIM2-M72	Rim2-M72	TRANSPOSON CACTG ELEMENT RIM2-M72	transposon CACTG element Rim2-M72			1	AP003020: 111,118-122,397.	 Other						GO:0032196 - transposition		
16386	RIM2-M73	Rim2-M73	TRANSPOSON CACTG ELEMENT RIM2-M73	transposon CACTG element Rim2-M73			1	AP003710: 14,676-25,961.	 Other						GO:0032196 - transposition		
16387	RIM2-M74	Rim2-M74	TRANSPOSON CACTG ELEMENT RIM2-M74	transposon CACTG element Rim2-M74			9	AC090056: 123,861-135,333.	 Other						GO:0032196 - transposition		
16388	RIM2-M75	Rim2-M75	TRANSPOSON CACTG ELEMENT RIM2-M75	transposon CACTG element Rim2-M75			1	AP003279: 22,798-35,291.	 Other						GO:0032196 - transposition		
16389	RIM2-M76	Rim2-M76	TRANSPOSON CACTG ELEMENT RIM2-M76	transposon CACTG element Rim2-M76			10	AC078948: 70,424-83,100.	 Other						GO:0032196 - transposition		
16390	RIM2-M77	Rim2-M77	TRANSPOSON CACTG ELEMENT RIM2-M77	transposon CACTG element Rim2-M77			10	AC079029: 51,198-64,904.	 Other						GO:0032196 - transposition		
16391	RIM2-M78	Rim2-M78	TRANSPOSON CACTG ELEMENT RIM2-M78	transposon CACTG element Rim2-M78			1	AP003435: 110,418-124,723.	 Other						GO:0032196 - transposition		
16392	RIM2-M79	Rim2-M79	TRANSPOSON CACTG ELEMENT RIM2-M79	transposon CACTG element Rim2-M79			1	AP003214: 59,465-73,773.	 Other						GO:0032196 - transposition		
16393	RIM2-M80	Rim2-M80	TRANSPOSON CACTG ELEMENT RIM2-M80	transposon CACTG element Rim2-M80			10	AC068654: 81,443-95,776.	 Other						GO:0032196 - transposition		
16394	RIM2-M81	Rim2-M81	TRANSPOSON CACTG ELEMENT RIM2-M81	transposon CACTG element Rim2-M81			10	AC090486: 146,647-162,110.	 Other						GO:0032196 - transposition		
16395	RIM2-M82	Rim2-M82	TRANSPOSON CACTG ELEMENT RIM2-M82	transposon CACTG element Rim2-M82			1	AP003021: 79,619-96,472.	 Other						GO:0032196 - transposition		
16396	RIM2-M83	Rim2-M83	TRANSPOSON CACTG ELEMENT RIM2-M83	transposon CACTG element Rim2-M83			1	AP003020: 32,808-50,845.	 Other						GO:0032196 - transposition		
16397	RIM2-M84	Rim2-M84	TRANSPOSON CACTG ELEMENT RIM2-M84	transposon CACTG element Rim2-M84			1	AP002968: 115,072-134,080.	 Other						GO:0032196 - transposition		
16398	RIM2-M85	Rim2-M85	TRANSPOSON CACTG ELEMENT RIM2-M85	transposon CACTG element Rim2-M85			1	AP003141: 109,786-130,143.	 Other						GO:0032196 - transposition		
16399	RIM2-M86	Rim2-M86	TRANSPOSON CACTG ELEMENT RIM2-M86	transposon CACTG element Rim2-M86			10	AC079852: 14,341-38,817.	 Other						GO:0032196 - transposition		
16400	RIM2-M87	Rim2-M87	TRANSPOSON CACTG ELEMENT RIM2-M87	transposon CACTG element Rim2-M87			1	AP003275: 92,758-118,197.	 Other						GO:0032196 - transposition		
16401	RIM2-M88	Rim2-M88	TRANSPOSON CACTG ELEMENT RIM2-M88	transposon CACTG element Rim2-M88			1	AP003215: 21,018-46,928.	 Other						GO:0032196 - transposition		
16402	RIM2-M89	Rim2-M89	TRANSPOSON CACTG ELEMENT RIM2-M89	transposon CACTG element Rim2-M89			1	AP002480: 78,554-104,838.	 Other						GO:0032196 - transposition		
16403	RIM2-M90	Rim2-M90	TRANSPOSON CACTG ELEMENT RIM2-M90	transposon CACTG element Rim2-M90			10	AC051624: 72,697-100,621.	 Other						GO:0032196 - transposition		
16404	RIM2-M91	Rim2-M91	TRANSPOSON CACTG ELEMENT RIM2-M91	transposon CACTG element Rim2-M91			1	AP003921: 27,409-59,195.	 Other						GO:0032196 - transposition		
16405	RIM2-M92	Rim2-M92	TRANSPOSON CACTG ELEMENT RIM2-M92	transposon CACTG element Rim2-M92			1	AP002860: 15,240-47,971.	 Other						GO:0032196 - transposition		
16406	RIM2-M93	Rim2-M93	TRANSPOSON CACTG ELEMENT RIM2-M93	transposon CACTG element Rim2-M93			10	AC078944: 15,597-51,214.	 Other						GO:0032196 - transposition		
16407	RIM2-M94	Rim2-M94	TRANSPOSON CACTG ELEMENT RIM2-M94	transposon CACTG element Rim2-M94			4	AL731633: 126,312-126,508.	 Other						GO:0032196 - transposition		
16408	RIM2-M95	Rim2-M95	TRANSPOSON CACTG ELEMENT RIM2-M95	transposon CACTG element Rim2-M95			4	AL606454: 43,709-44,130.	 Other						GO:0032196 - transposition		
16409	RIM2-M96	Rim2-M96	TRANSPOSON CACTG ELEMENT RIM2-M96	transposon CACTG element Rim2-M96			3	AC116426: 15,921-16,468.	 Other						GO:0032196 - transposition		
16410	RIM2-M97	Rim2-M97	TRANSPOSON CACTG ELEMENT RIM2-M97	transposon CACTG element Rim2-M97			7	AP003759: 102,732-103,281.	 Other						GO:0032196 - transposition		
16411	RIM2-M98	Rim2-M98	TRANSPOSON CACTG ELEMENT RIM2-M98	transposon CACTG element Rim2-M98			3	AC099732: 8,599-9,217.	 Other						GO:0032196 - transposition		
16412	RIM2-M99	Rim2-M99	TRANSPOSON CACTG ELEMENT RIM2-M99	transposon CACTG element Rim2-M99			4	AL606450: 32,232-32,865.	 Other						GO:0032196 - transposition		
16413	RIM2-M100	Rim2-M100	TRANSPOSON CACTG ELEMENT RIM2-M100	transposon CACTG element Rim2-M100			4	AL606994: 93,451-94,132.	 Other						GO:0032196 - transposition		
16414	RIM2-M101	Rim2-M101	TRANSPOSON CACTG ELEMENT RIM2-M101	transposon CACTG element Rim2-M101			4	AL606616: 16,906-17,649.	 Other						GO:0032196 - transposition		
16415	RIM2-M102	Rim2-M102	TRANSPOSON CACTG ELEMENT RIM2-M102	transposon CACTG element Rim2-M102			4	AL731592: 1,284-2,058.	 Other						GO:0032196 - transposition		
16416	RIM2-M103	Rim2-M103	TRANSPOSON CACTG ELEMENT RIM2-M103	transposon CACTG element Rim2-M103			3	AC105729: 116,397-117,247.	 Other						GO:0032196 - transposition		
16417	RIM2-M104	Rim2-M104	TRANSPOSON CACTG ELEMENT RIM2-M104	transposon CACTG element Rim2-M104			4	AL662994: 87,820-88,682.	 Other						GO:0032196 - transposition		
16418	RIM2-M105	Rim2-M105	TRANSPOSON CACTG ELEMENT RIM2-M105	transposon CACTG element Rim2-M105			10	AC069300: 79,682-80,577.	 Other						GO:0032196 - transposition		
16419	RIM2-M106	Rim2-M106	TRANSPOSON CACTG ELEMENT RIM2-M106	transposon CACTG element Rim2-M106			4	AL662972: 89,273-90,173.	 Other						GO:0032196 - transposition		
16420	RIM2-M107	Rim2-M107	TRANSPOSON CACTG ELEMENT RIM2-M107	transposon CACTG element Rim2-M107			1	AP003229: 125,813-126,716.	 Other						GO:0032196 - transposition		
16421	RIM2-M108	Rim2-M108	TRANSPOSON CACTG ELEMENT RIM2-M108	transposon CACTG element Rim2-M108			10	AC084884: 51,472-52,408.	 Other						GO:0032196 - transposition		
16422	RIM2-M109	Rim2-M109	TRANSPOSON CACTG ELEMENT RIM2-M109	transposon CACTG element Rim2-M109			4	AL663008: 113,437-114,383.	 Other						GO:0032196 - transposition		
16423	RIM2-M110	Rim2-M110	TRANSPOSON CACTG ELEMENT RIM2-M110	transposon CACTG element Rim2-M110			1	AP003023: 54,640-55,603.	 Other						GO:0032196 - transposition		
16424	RIM2-M111	Rim2-M111	TRANSPOSON CACTG ELEMENT RIM2-M111	transposon CACTG element Rim2-M111			4	AL442110: 11,283-12,249.	 Other						GO:0032196 - transposition		
16425	RIM2-M112	Rim2-M112	TRANSPOSON CACTG ELEMENT RIM2-M112	transposon CACTG element Rim2-M112			10	AC027662: 95,664-96,631.	 Other						GO:0032196 - transposition		
16426	RIM2-M113	Rim2-M113	TRANSPOSON CACTG ELEMENT RIM2-M113	transposon CACTG element Rim2-M113			4	AL663018: 22,586-23,556.	 Other						GO:0032196 - transposition		
16427	RIM2-M114	Rim2-M114	TRANSPOSON CACTG ELEMENT RIM2-M114	transposon CACTG element Rim2-M114			1	AP003208: 82,905-83,885.	 Other						GO:0032196 - transposition		
16428	RIM2-M115	Rim2-M115	TRANSPOSON CACTG ELEMENT RIM2-M115	transposon CACTG element Rim2-M115			7	AP003815: 58,808-59,792.	 Other						GO:0032196 - transposition		
16429	RIM2-M116	Rim2-M116	TRANSPOSON CACTG ELEMENT RIM2-M116	transposon CACTG element Rim2-M116			1	AP004232: 35,413-36,408.	 Other						GO:0032196 - transposition		
16430	RIM2-M117	Rim2-M117	TRANSPOSON CACTG ELEMENT RIM2-M117	transposon CACTG element Rim2-M117			4	AL731591: 107,115-108,117.	 Other						GO:0032196 - transposition		
16431	RIM2-M118	Rim2-M118	TRANSPOSON CACTG ELEMENT RIM2-M118	transposon CACTG element Rim2-M118			1	AP001081: 68,422-69,426.	 Other						GO:0032196 - transposition		
16432	RIM2-M119	Rim2-M119	TRANSPOSON CACTG ELEMENT RIM2-M119	transposon CACTG element Rim2-M119			7	AP005194: 88,010-89,020.	 Other						GO:0032196 - transposition		
16433	RIM2-M120	Rim2-M120	TRANSPOSON CACTG ELEMENT RIM2-M120	transposon CACTG element Rim2-M120			1	AP004225: 138,446-139,458.	 Other						GO:0032196 - transposition		
16434	RIM2-M121	Rim2-M121	TRANSPOSON CACTG ELEMENT RIM2-M121	transposon CACTG element Rim2-M121			1	AP002868: 83,166-84,189.	 Other						GO:0032196 - transposition		
16435	RIM2-M122	Rim2-M122	TRANSPOSON CACTG ELEMENT RIM2-M122	transposon CACTG element Rim2-M122			1	AP003053: 54,222-55,246.	 Other						GO:0032196 - transposition		
16436	RIM2-M123	Rim2-M123	TRANSPOSON CACTG ELEMENT RIM2-M123	transposon CACTG element Rim2-M123			1	AP003238: 58,569-59,593.	 Other						GO:0032196 - transposition		
16437	RIM2-M124	Rim2-M124	TRANSPOSON CACTG ELEMENT RIM2-M124	transposon CACTG element Rim2-M124			7	AP003806: 90,458-91,490.	 Other						GO:0032196 - transposition		
16438	RIM2-M125	Rim2-M125	TRANSPOSON CACTG ELEMENT RIM2-M125	transposon CACTG element Rim2-M125			4	AL662991: 51,224-52,260.	 Other						GO:0032196 - transposition		
16439	RIM2-M126	Rim2-M126	TRANSPOSON CACTG ELEMENT RIM2-M126	transposon CACTG element Rim2-M126			10	AC027660: 46,317-47,360.	 Other						GO:0032196 - transposition		
16440	RIM2-M127	Rim2-M127	TRANSPOSON CACTG ELEMENT RIM2-M127	transposon CACTG element Rim2-M127			1	AP003141: 30,940-31,983.	 Other						GO:0032196 - transposition		
16441	RIM2-M128	Rim2-M128	TRANSPOSON CACTG ELEMENT RIM2-M128	transposon CACTG element Rim2-M128			9	AC090056: 92,619-93,663.	 Other						GO:0032196 - transposition		
16442	RIM2-M129	Rim2-M129	TRANSPOSON CACTG ELEMENT RIM2-M129	transposon CACTG element Rim2-M129			4	AL606442: 27,810-28,854.	 Other						GO:0032196 - transposition		
16443	RIM2-M130	Rim2-M130	TRANSPOSON CACTG ELEMENT RIM2-M130	transposon CACTG element Rim2-M130			4	AL606592: 88,461-89,509.	 Other						GO:0032196 - transposition		
16444	RIM2-M131	Rim2-M131	TRANSPOSON CACTG ELEMENT RIM2-M131	transposon CACTG element Rim2-M131			1	AP002972: 59,526-60,573.	 Other						GO:0032196 - transposition		
16445	RIM2-M132	Rim2-M132	TRANSPOSON CACTG ELEMENT RIM2-M132	transposon CACTG element Rim2-M132			4	AL606997: 61,933-62,983.	 Other						GO:0032196 - transposition		
16446	RIM2-M133	Rim2-M133	TRANSPOSON CACTG ELEMENT RIM2-M133	transposon CACTG element Rim2-M133			1	AP003852: 75,652-76,704.	 Other						GO:0032196 - transposition		
16447	RIM2-M134	Rim2-M134	TRANSPOSON CACTG ELEMENT RIM2-M134	transposon CACTG element Rim2-M134			10	AC090487: 41,977-43,030.	 Other						GO:0032196 - transposition		
16448	RIM2-M135	Rim2-M135	TRANSPOSON CACTG ELEMENT RIM2-M135	transposon CACTG element Rim2-M135			3	AC083942: 9,501-10,555.	 Other						GO:0032196 - transposition		
16449	RIM2-M136	Rim2-M136	TRANSPOSON CACTG ELEMENT RIM2-M136	transposon CACTG element Rim2-M136			1	AP003722: 24,502-25,556.	 Other						GO:0032196 - transposition		
16450	RIM2-M137	Rim2-M137	TRANSPOSON CACTG ELEMENT RIM2-M137	transposon CACTG element Rim2-M137			1	AP003278: 76,684-77,741.	 Other						GO:0032196 - transposition		
16451	RIM2-M138	Rim2-M138	TRANSPOSON CACTG ELEMENT RIM2-M138	transposon CACTG element Rim2-M138			4	AL662965: 93,691-94,749.	 Other						GO:0032196 - transposition		
16452	RIM2-M139	Rim2-M139	TRANSPOSON CACTG ELEMENT RIM2-M139	transposon CACTG element Rim2-M139			4	AL606443: 76,603-77,665.	 Other						GO:0032196 - transposition		
16453	RIM2-M140	Rim2-M140	TRANSPOSON CACTG ELEMENT RIM2-M140	transposon CACTG element Rim2-M140			1	AP003855: 119,028-120,089.	 Other						GO:0032196 - transposition		
16454	RIM2-M141	Rim2-M141	TRANSPOSON CACTG ELEMENT RIM2-M141	transposon CACTG element Rim2-M141			1	AP003432: 96,678-97,743.	 Other						GO:0032196 - transposition		
16455	RIM2-M142	Rim2-M142	TRANSPOSON CACTG ELEMENT RIM2-M142	transposon CACTG element Rim2-M142			4	AL606620: 64,718-65,785.	 Other						GO:0032196 - transposition		
16456	RIM2-M143	Rim2-M143	TRANSPOSON CACTG ELEMENT RIM2-M143	transposon CACTG element Rim2-M143			10	AC025783: 153,092-154,160.	 Other						GO:0032196 - transposition		
16457	RIM2-M144	Rim2-M144	TRANSPOSON CACTG ELEMENT RIM2-M144	transposon CACTG element Rim2-M144			7	AP005178: 127,148-128,220.	 Other						GO:0032196 - transposition		
16458	RIM2-M145	Rim2-M145	TRANSPOSON CACTG ELEMENT RIM2-M145	transposon CACTG element Rim2-M145			3	AP000615: 87,698-88,773.	 Other						GO:0032196 - transposition		
16459	RIM2-M146	Rim2-M146	TRANSPOSON CACTG ELEMENT RIM2-M146	transposon CACTG element Rim2-M146			4	AF480497: 63,336-64,413.	 Other						GO:0032196 - transposition		
16460	RIM2-M147	Rim2-M147	TRANSPOSON CACTG ELEMENT RIM2-M147	transposon CACTG element Rim2-M147			1	AP003409: 48,039-49,116.	 Other						GO:0032196 - transposition		
16461	RIM2-M148	Rim2-M148	TRANSPOSON CACTG ELEMENT RIM2-M148	transposon CACTG element Rim2-M148			1	AP003255: 110,632-111,712.	 Other						GO:0032196 - transposition		
16462	RIM2-M149	Rim2-M149	TRANSPOSON CACTG ELEMENT RIM2-M149	transposon CACTG element Rim2-M149			7	AP003740: 18,894-19,975.	 Other						GO:0032196 - transposition		
16463	RIM2-M150	Rim2-M150	TRANSPOSON CACTG ELEMENT RIM2-M150	transposon CACTG element Rim2-M150			1	AP000837: 129,054-130,135.	 Other						GO:0032196 - transposition		
16464	RIM2-M151	Rim2-M151	TRANSPOSON CACTG ELEMENT RIM2-M151	transposon CACTG element Rim2-M151			4	AL606635: 111,118-112,202.	 Other						GO:0032196 - transposition		
16465	RIM2-M152	Rim2-M152	TRANSPOSON CACTG ELEMENT RIM2-M152	transposon CACTG element Rim2-M152			3	AC079853: 18,553-19,643.	 Other						GO:0032196 - transposition		
16466	RIM2-M153	Rim2-M153	TRANSPOSON CACTG ELEMENT RIM2-M153	transposon CACTG element Rim2-M153			3	AC079887: 137,536-138,625.	 Other						GO:0032196 - transposition		
16467	RIM2-M154	Rim2-M154	TRANSPOSON CACTG ELEMENT RIM2-M154	transposon CACTG element Rim2-M154			9	AC090054: 104,072-105,161.	 Other						GO:0032196 - transposition		
16468	RIM2-M155	Rim2-M155	TRANSPOSON CACTG ELEMENT RIM2-M155	transposon CACTG element Rim2-M155			10	AC087544: 53,945-55,048.	 Other						GO:0032196 - transposition		
16469	RIM2-M156	Rim2-M156	TRANSPOSON CACTG ELEMENT RIM2-M156	transposon CACTG element Rim2-M156			10	AC087549: 97,140-98,245.	 Other						GO:0032196 - transposition		
16470	RIM2-M157	Rim2-M157	TRANSPOSON CACTG ELEMENT RIM2-M157	transposon CACTG element Rim2-M157			7	AP004260: 47,470-48,574.	 Other						GO:0032196 - transposition		
16471	RIM2-M158	Rim2-M158	TRANSPOSON CACTG ELEMENT RIM2-M158	transposon CACTG element Rim2-M158			4	AL662981: 152,420-153,527.	 Other						GO:0032196 - transposition		
16472	RIM2-M159	Rim2-M159	TRANSPOSON CACTG ELEMENT RIM2-M159	transposon CACTG element Rim2-M159			10	AC098566: 66,894-68,002.	 Other						GO:0032196 - transposition		
16473	RIM2-M160	Rim2-M160	TRANSPOSON CACTG ELEMENT RIM2-M160	transposon CACTG element Rim2-M160			10	AC021892: 131,384-132,496.	 Other						GO:0032196 - transposition		
16474	RIM2-M161	Rim2-M161	TRANSPOSON CACTG ELEMENT RIM2-M161	transposon CACTG element Rim2-M161			10	AC074355: 52,631-53,747.	 Other						GO:0032196 - transposition		
16475	RIM2-M162	Rim2-M162	TRANSPOSON CACTG ELEMENT RIM2-M162	transposon CACTG element Rim2-M162			1	AP003223: 74,331-75,448.	 Other						GO:0032196 - transposition		
16476	RIM2-M163	Rim2-M163	TRANSPOSON CACTG ELEMENT RIM2-M163	transposon CACTG element Rim2-M163			2	AC083751: 20,563-21,683.	 Other						GO:0032196 - transposition		
16477	RIM2-M164	Rim2-M164	TRANSPOSON CACTG ELEMENT RIM2-M164	transposon CACTG element Rim2-M164			10	AC087723: 78,084-79,207.	 Other						GO:0032196 - transposition		
16478	RIM2-M165	Rim2-M165	TRANSPOSON CACTG ELEMENT RIM2-M165	transposon CACTG element Rim2-M165			1	AP004072: 146,702-147,827.	 Other						GO:0032196 - transposition		
16479	RIM2-M166	Rim2-M166	TRANSPOSON CACTG ELEMENT RIM2-M166	transposon CACTG element Rim2-M166			11	AC119072: 69,641-70,768.	 Other						GO:0032196 - transposition		
16480	RIM2-M167	Rim2-M167	TRANSPOSON CACTG ELEMENT RIM2-M167	transposon CACTG element Rim2-M167			10	AC093568: 73,289-74,415.	 Other						GO:0032196 - transposition		
16481	RIM2-M168	Rim2-M168	TRANSPOSON CACTG ELEMENT RIM2-M168	transposon CACTG element Rim2-M168			10	AC099400: 76,151-77,277.	 Other						GO:0032196 - transposition		
16482	RIM2-M169	Rim2-M169	TRANSPOSON CACTG ELEMENT RIM2-M169	transposon CACTG element Rim2-M169			1	AP003406: 127,014-128,143.	 Other						GO:0032196 - transposition		
16483	RIM2-M170	Rim2-M170	TRANSPOSON CACTG ELEMENT RIM2-M170	transposon CACTG element Rim2-M170			10	AC098566: 77,279-78,410.	 Other						GO:0032196 - transposition		
16484	RIM2-M171	Rim2-M171	TRANSPOSON CACTG ELEMENT RIM2-M171	transposon CACTG element Rim2-M171			1	AP004368: 24,975-26,107.	 Other						GO:0032196 - transposition		
16485	RIM2-M172	Rim2-M172	TRANSPOSON CACTG ELEMENT RIM2-M172	transposon CACTG element Rim2-M172			1	AP003333: 71,674-72,807.	 Other						GO:0032196 - transposition		
16486	RIM2-M173	Rim2-M173	TRANSPOSON CACTG ELEMENT RIM2-M173	transposon CACTG element Rim2-M173			10	AC021891: 8,794-9,927.	 Other						GO:0032196 - transposition		
16487	RIM2-M174	Rim2-M174	TRANSPOSON CACTG ELEMENT RIM2-M174	transposon CACTG element Rim2-M174			10	AC108884: 9,839-10,972.	 Other						GO:0032196 - transposition		
16488	RIM2-M175	Rim2-M175	TRANSPOSON CACTG ELEMENT RIM2-M175	transposon CACTG element Rim2-M175			1	AP003792: 41,845-42,977.	 Other						GO:0032196 - transposition		
16489	RIM2-M176	Rim2-M176	TRANSPOSON CACTG ELEMENT RIM2-M176	transposon CACTG element Rim2-M176			5	AC079022: 99,740-100,876.	 Other						GO:0032196 - transposition		
16490	RIM2-M177	Rim2-M177	TRANSPOSON CACTG ELEMENT RIM2-M177	transposon CACTG element Rim2-M177			1	AP003709: 73,708-74,851.	 Other						GO:0032196 - transposition		
16491	RIM2-M178	Rim2-M178	TRANSPOSON CACTG ELEMENT RIM2-M178	transposon CACTG element Rim2-M178			10	AC113335: 70,545-71,689.	 Other						GO:0032196 - transposition		
16492	RIM2-M179	Rim2-M179	TRANSPOSON CACTG ELEMENT RIM2-M179	transposon CACTG element Rim2-M179			4	AL606990: 30,668-31,813.	 Other						GO:0032196 - transposition		
16493	RIM2-M180	Rim2-M180	TRANSPOSON CACTG ELEMENT RIM2-M180	transposon CACTG element Rim2-M180			3	AC118675: 31,548-32,694.	 Other						GO:0032196 - transposition		
16494	RIM2-M181	Rim2-M181	TRANSPOSON CACTG ELEMENT RIM2-M181	transposon CACTG element Rim2-M181			4	AL662991: 99,232-100,377.	 Other						GO:0032196 - transposition		
16495	RIM2-M182	Rim2-M182	TRANSPOSON CACTG ELEMENT RIM2-M182	transposon CACTG element Rim2-M182			7	AP005178: 44,415-45,561.	 Other						GO:0032196 - transposition		
16496	RIM2-M183	Rim2-M183	TRANSPOSON CACTG ELEMENT RIM2-M183	transposon CACTG element Rim2-M183			7	AP003740: 82,834-83,983.	 Other						GO:0032196 - transposition		
16497	RIM2-M184	Rim2-M184	TRANSPOSON CACTG ELEMENT RIM2-M184	transposon CACTG element Rim2-M184			4	AL663004: 25,459-26,610.	 Other						GO:0032196 - transposition		
16498	RIM2-M185	Rim2-M185	TRANSPOSON CACTG ELEMENT RIM2-M185	transposon CACTG element Rim2-M185			1	AP003293: 28,291-29,441.	 Other						GO:0032196 - transposition		
16499	RIM2-M186	Rim2-M186	TRANSPOSON CACTG ELEMENT RIM2-M186	transposon CACTG element Rim2-M186			3	AC115687: 90,382-91,535.	 Other						GO:0032196 - transposition		
16500	RIM2-M187	Rim2-M187	TRANSPOSON CACTG ELEMENT RIM2-M187	transposon CACTG element Rim2-M187			1	AP004253: 44,024-45,193.	 Other						GO:0032196 - transposition		
16501	RIM2-M188	Rim2-M188	TRANSPOSON CACTG ELEMENT RIM2-M188	transposon CACTG element Rim2-M188			7	AP005106: 48,257-49,411.	 Other						GO:0032196 - transposition		
16502	RIM2-M189	Rim2-M189	TRANSPOSON CACTG ELEMENT RIM2-M189	transposon CACTG element Rim2-M189			7	AP005465: 46,839-47,996.	 Other						GO:0032196 - transposition		
16503	RIM2-M190	Rim2-M190	TRANSPOSON CACTG ELEMENT RIM2-M190	transposon CACTG element Rim2-M190			4	AL731593: 18,552-19,717.	 Other						GO:0032196 - transposition		
16504	RIM2-M191	Rim2-M191	TRANSPOSON CACTG ELEMENT RIM2-M191	transposon CACTG element Rim2-M191			1	AP003560: 112,943-114,107.	 Other						GO:0032196 - transposition		
16505	RIM2-M192	Rim2-M192	TRANSPOSON CACTG ELEMENT RIM2-M192	transposon CACTG element Rim2-M192			10	AC108884: 62,618-63,790.	 Other						GO:0032196 - transposition		
16506	RIM2-M193	Rim2-M193	TRANSPOSON CACTG ELEMENT RIM2-M193	transposon CACTG element Rim2-M193			10	AC092172: 67,775-68,953.	 Other						GO:0032196 - transposition		
16507	RIM2-M194	Rim2-M194	TRANSPOSON CACTG ELEMENT RIM2-M194	transposon CACTG element Rim2-M194			4	AL606441: 20,446-21,624.	 Other						GO:0032196 - transposition		
16508	RIM2-M195	Rim2-M195	TRANSPOSON CACTG ELEMENT RIM2-M195	transposon CACTG element Rim2-M195			10	AC069324: 115,552-116,734.	 Other						GO:0032196 - transposition		
16509	RIM2-M196	Rim2-M196	TRANSPOSON CACTG ELEMENT RIM2-M196	transposon CACTG element Rim2-M196			1	AP002819: 101,134-102,234.	 Other						GO:0032196 - transposition		
16510	RIM2-M197	Rim2-M197	TRANSPOSON CACTG ELEMENT RIM2-M197	transposon CACTG element Rim2-M197			3	AC079830: 57,991-59,177.	 Other						GO:0032196 - transposition		
16511	RIM2-M198	Rim2-M198	TRANSPOSON CACTG ELEMENT RIM2-M198	transposon CACTG element Rim2-M198			2	AC083751: 116,916-118,106.	 Other						GO:0032196 - transposition		
16512	RIM2-M199	Rim2-M199	TRANSPOSON CACTG ELEMENT RIM2-M199	transposon CACTG element Rim2-M199			4	AL663004: 85,887-87,079.	 Other						GO:0032196 - transposition		
16513	RIM2-M200	Rim2-M200	TRANSPOSON CACTG ELEMENT RIM2-M200	transposon CACTG element Rim2-M200			11	AC109645: 14,421-15,615.	 Other						GO:0032196 - transposition		
16514	RIM2-M201	Rim2-M201	TRANSPOSON CACTG ELEMENT RIM2-M201	transposon CACTG element Rim2-M201			7	AP004266: 66,690-67,884.	 Other						GO:0032196 - transposition		
16515	RIM2-M202	Rim2-M202	TRANSPOSON CACTG ELEMENT RIM2-M202	transposon CACTG element Rim2-M202			5	AC079022: 94,152-95,349.	 Other						GO:0032196 - transposition		
16516	RIM2-M203	Rim2-M203	TRANSPOSON CACTG ELEMENT RIM2-M203	transposon CACTG element Rim2-M203			4	AL731599: 143,416-144,614.	 Other						GO:0032196 - transposition		
16517	RIM2-M204	Rim2-M204	TRANSPOSON CACTG ELEMENT RIM2-M204	transposon CACTG element Rim2-M204			7	AP003746: 100,514-101,713.	 Other						GO:0032196 - transposition		
16518	RIM2-M205	Rim2-M205	TRANSPOSON CACTG ELEMENT RIM2-M205	transposon CACTG element Rim2-M205			1	AP003934: 29,315-30,521.	 Other						GO:0032196 - transposition		
16519	RIM2-M206	Rim2-M206	TRANSPOSON CACTG ELEMENT RIM2-M206	transposon CACTG element Rim2-M206			1	AP003296: 18,583-19,791.	 Other						GO:0032196 - transposition		
16520	RIM2-M207	Rim2-M207	TRANSPOSON CACTG ELEMENT RIM2-M207	transposon CACTG element Rim2-M207			1	AP003242: 12,788-13,997.	 Other						GO:0032196 - transposition		
16521	RIM2-M208	Rim2-M208	TRANSPOSON CACTG ELEMENT RIM2-M208	transposon CACTG element Rim2-M208			1	AP003417: 102,937-104,148.	 Other						GO:0032196 - transposition		
16522	RIM2-M209	Rim2-M209	TRANSPOSON CACTG ELEMENT RIM2-M209	transposon CACTG element Rim2-M209			1	AP002872: 47,233-48,446.	 Other						GO:0032196 - transposition		
16523	RIM2-M210	Rim2-M210	TRANSPOSON CACTG ELEMENT RIM2-M210	transposon CACTG element Rim2-M210			3	AC107315: 102,746-103,963.	 Other						GO:0032196 - transposition		
16524	RIM2-M211	Rim2-M211	TRANSPOSON CACTG ELEMENT RIM2-M211	transposon CACTG element Rim2-M211			1	AP003414: 97,467-98,690.	 Other						GO:0032196 - transposition		
16525	RIM2-M212	Rim2-M212	TRANSPOSON CACTG ELEMENT RIM2-M212	transposon CACTG element Rim2-M212			7	AP004380: 109,999-111,220.	 Other						GO:0032196 - transposition		
16526	RIM2-M213	Rim2-M213	TRANSPOSON CACTG ELEMENT RIM2-M213	transposon CACTG element Rim2-M213			10	AC091666: 58,400-59,723.	 Other						GO:0032196 - transposition		
16527	RIM2-M214	Rim2-M214	TRANSPOSON CACTG ELEMENT RIM2-M214	transposon CACTG element Rim2-M214			3	AC104179: 70,281-71,504.	 Other						GO:0032196 - transposition		
16528	RIM2-M215	Rim2-M215	TRANSPOSON CACTG ELEMENT RIM2-M215	transposon CACTG element Rim2-M215			1	AP003246: 168,024-169,247.	 Other						GO:0032196 - transposition		
16529	RIM2-M216	Rim2-M216	TRANSPOSON CACTG ELEMENT RIM2-M216	transposon CACTG element Rim2-M216			4	AL606443: 115,069-116,296.	 Other						GO:0032196 - transposition		
16530	RIM2-M217	Rim2-M217	TRANSPOSON CACTG ELEMENT RIM2-M217	transposon CACTG element Rim2-M217			1	AP002820: 118,322-120,422.	 Other						GO:0032196 - transposition		
16531	RIM2-M218	Rim2-M218	TRANSPOSON CACTG ELEMENT RIM2-M218	transposon CACTG element Rim2-M218			1	AP003760: 60,233-61,460.	 Other						GO:0032196 - transposition		
16532	RIM2-M219	Rim2-M219	TRANSPOSON CACTG ELEMENT RIM2-M219	transposon CACTG element Rim2-M219			4	AL662983: 69,865-71,096.	 Other						GO:0032196 - transposition		
16533	RIM2-M220	Rim2-M220	TRANSPOSON CACTG ELEMENT RIM2-M220	transposon CACTG element Rim2-M220			4	AL606604: 60,938-62,172.	 Other						GO:0032196 - transposition		
16534	RIM2-M221	Rim2-M221	TRANSPOSON CACTG ELEMENT RIM2-M221	transposon CACTG element Rim2-M221			4	AL662956: 47,404-48,655.	 Other						GO:0032196 - transposition		
16535	RIM2-M222	Rim2-M222	TRANSPOSON CACTG ELEMENT RIM2-M222	transposon CACTG element Rim2-M222			4	AL731633: 21,314-22,571.	 Other						GO:0032196 - transposition		
16536	RIM2-M223	Rim2-M223	TRANSPOSON CACTG ELEMENT RIM2-M223	transposon CACTG element Rim2-M223			7	AP005051: 55,855-57,114.	 Other						GO:0032196 - transposition		
16537	RIM2-M224	Rim2-M224	TRANSPOSON CACTG ELEMENT RIM2-M224	transposon CACTG element Rim2-M224			1	AP003276: 73,683-74,947.	 Other						GO:0032196 - transposition		
16538	RIM2-M225	Rim2-M225	TRANSPOSON CACTG ELEMENT RIM2-M225	transposon CACTG element Rim2-M225			1	AP003921: 110,583-111,849.	 Other						GO:0032196 - transposition		
16539	RIM2-M226	Rim2-M226	TRANSPOSON CACTG ELEMENT RIM2-M226	transposon CACTG element Rim2-M226			10	AC099734: 74,252-75,519.	 Other						GO:0032196 - transposition		
16540	RIM2-M227	Rim2-M227	TRANSPOSON CACTG ELEMENT RIM2-M227	transposon CACTG element Rim2-M227			4	AL662934: 44,833-4,613.	 Other						GO:0032196 - transposition		
16541	RIM2-M228	Rim2-M228	TRANSPOSON CACTG ELEMENT RIM2-M228	transposon CACTG element Rim2-M228			4	AL662966: 64,526-65,826.	 Other						GO:0032196 - transposition		
16542	RIM2-M229	Rim2-M229	TRANSPOSON CACTG ELEMENT RIM2-M229	transposon CACTG element Rim2-M229			7	AP003850: 12,903-14,229.	 Other						GO:0032196 - transposition		
16543	RIM2-M230	Rim2-M230	TRANSPOSON CACTG ELEMENT RIM2-M230	transposon CACTG element Rim2-M230			1	AP003329: 8,078-9,415.	 Other						GO:0032196 - transposition		
16544	RIM2-M231	Rim2-M231	TRANSPOSON CACTG ELEMENT RIM2-M231	transposon CACTG element Rim2-M231			10	AC091665: 25,081-26,421.	 Other						GO:0032196 - transposition		
16545	RIM2-M232	Rim2-M232	TRANSPOSON CACTG ELEMENT RIM2-M232	transposon CACTG element Rim2-M232			4	AL662976: 70,165-71,514.	 Other						GO:0032196 - transposition		
16546	RIM2-M233	Rim2-M233	TRANSPOSON CACTG ELEMENT RIM2-M233	transposon CACTG element Rim2-M233			7	AP005486: 89,172-90,531.	 Other						GO:0032196 - transposition		
16547	RIM2-M234	Rim2-M234	TRANSPOSON CACTG ELEMENT RIM2-M234	transposon CACTG element Rim2-M234			4	AL606729: 53,319-54,690.	 Other						GO:0032196 - transposition		
16548	RIM2-M235	Rim2-M235	TRANSPOSON CACTG ELEMENT RIM2-M235	transposon CACTG element Rim2-M235			4	AL606448: 132,564-133,937.	 Other						GO:0032196 - transposition		
16549	RIM2-M236	Rim2-M236	TRANSPOSON CACTG ELEMENT RIM2-M236	transposon CACTG element Rim2-M236			1	AP003335: 154,314-155,690.	 Other						GO:0032196 - transposition		
16550	RIM2-M237	Rim2-M237	TRANSPOSON CACTG ELEMENT RIM2-M237	transposon CACTG element Rim2-M237			7	AP004272: 96,887-98,274.	 Other						GO:0032196 - transposition		
16551	RIM2-M238	Rim2-M238	TRANSPOSON CACTG ELEMENT RIM2-M238	transposon CACTG element Rim2-M238			1	AP003229: 128,499-129,887.	 Other						GO:0032196 - transposition		
16552	RIM2-M239	Rim2-M239	TRANSPOSON CACTG ELEMENT RIM2-M239	transposon CACTG element Rim2-M239			1	AP003333: 104,271-105,663.	 Other						GO:0032196 - transposition		
16553	RIM2-M240	Rim2-M240	TRANSPOSON CACTG ELEMENT RIM2-M240	transposon CACTG element Rim2-M240			4	AL606651: 64,512-65,906.	 Other						GO:0032196 - transposition		
16554	RIM2-M241	Rim2-M241	TRANSPOSON CACTG ELEMENT RIM2-M241	transposon CACTG element Rim2-M241			4	AL606627: 150,228-151,703.	 Other						GO:0032196 - transposition		
16555	RIM2-M242	Rim2-M242	TRANSPOSON CACTG ELEMENT RIM2-M242	transposon CACTG element Rim2-M242			2	AF480496: 128,218-129,697.	 Other						GO:0032196 - transposition		
16556	RIM2-M243	Rim2-M243	TRANSPOSON CACTG ELEMENT RIM2-M243	transposon CACTG element Rim2-M243			10	AC027658: 60,094-61,574.	 Other						GO:0032196 - transposition		
16557	RIM2-M244	Rim2-M244	TRANSPOSON CACTG ELEMENT RIM2-M244	transposon CACTG element Rim2-M244			1	AP003196: 21,831-23,341.	 Other						GO:0032196 - transposition		
16558	RIM2-M245	Rim2-M245	TRANSPOSON CACTG ELEMENT RIM2-M245	transposon CACTG element Rim2-M245			2	AC083751: 146,300-148,087.	 Other						GO:0032196 - transposition		
16559	RIM2-M246	Rim2-M246	TRANSPOSON CACTG ELEMENT RIM2-M246	transposon CACTG element Rim2-M246			10	AC087599: 84,428-86,614.	 Other						GO:0032196 - transposition		
16560	RIM2-M247	Rim2-M247	TRANSPOSON CACTG ELEMENT RIM2-M247	transposon CACTG element Rim2-M247			4	AL662991: 7,902-10,350.	 Other						GO:0032196 - transposition		
16561	RIM2-M248	Rim2-M248	TRANSPOSON CACTG ELEMENT RIM2-M248	transposon CACTG element Rim2-M248			10	AC113336: 8,023-10,524.	 Other						GO:0032196 - transposition		
16562	RIM2-M249	Rim2-M249	TRANSPOSON CACTG ELEMENT RIM2-M249	transposon CACTG element Rim2-M249			1	AP003220: 29,200-32,071.	 Other						GO:0032196 - transposition		
16563	RIM2-M250	Rim2-M250	TRANSPOSON CACTG ELEMENT RIM2-M250	transposon CACTG element Rim2-M250			1	AP003536: 17,615-20,490.	 Other						GO:0032196 - transposition		
16564	RIM2-M251	Rim2-M251	TRANSPOSON CACTG ELEMENT RIM2-M251	transposon CACTG element Rim2-M251			1	AP003260: 40,086-43,971.	 Other						GO:0032196 - transposition		
16565	RIM2-M252	Rim2-M252	TRANSPOSON CACTG ELEMENT RIM2-M252	transposon CACTG element Rim2-M252			10	AC090873: 96,694-100,457.	 Other						GO:0032196 - transposition		
16566	RIM2-M253	Rim2-M253	TRANSPOSON CACTG ELEMENT RIM2-M253	transposon CACTG element Rim2-M253			10	AC115686: 97,619-101,819.	 Other						GO:0032196 - transposition		
16567	RIM2-M254	Rim2-M254	TRANSPOSON CACTG ELEMENT RIM2-M254	transposon CACTG element Rim2-M254			4	AL662951: 6,730-10,960.	 Other						GO:0032196 - transposition		
16568	RIM2-M255	Rim2-M255	TRANSPOSON CACTG ELEMENT RIM2-M255	transposon CACTG element Rim2-M255			1	AP003563: 70,330-74,750.	 Other						GO:0032196 - transposition		
16569	RIM2-M256	Rim2-M256	TRANSPOSON CACTG ELEMENT RIM2-M256	transposon CACTG element Rim2-M256			4	AL662960: 168,903-173,526.	 Other						GO:0032196 - transposition		
16570	RIM2-M257	Rim2-M257	TRANSPOSON CACTG ELEMENT RIM2-M257	transposon CACTG element Rim2-M257			10	AC099774: 56,151-60,825.	 Other						GO:0032196 - transposition		
16571	RIM2-M258	Rim2-M258	TRANSPOSON CACTG ELEMENT RIM2-M258	transposon CACTG element Rim2-M258			1	AP003856: 40,005-45,254.	 Other						GO:0032196 - transposition		
16572	RIM2-M259	Rim2-M259	TRANSPOSON CACTG ELEMENT RIM2-M259	transposon CACTG element Rim2-M259			10	AC090873: 14,599-19,902.	 Other						GO:0032196 - transposition		
16573	RIM2-M260	Rim2-M260	TRANSPOSON CACTG ELEMENT RIM2-M260	transposon CACTG element Rim2-M260			1	AP002483: 14,728-20,078.	 Other						GO:0032196 - transposition		
16574	RIM2-M261	Rim2-M261	TRANSPOSON CACTG ELEMENT RIM2-M261	transposon CACTG element Rim2-M261			4	AL606613: 15,054-151,703.	 Other						GO:0032196 - transposition		
16575	RIM2-M262	Rim2-M262	TRANSPOSON CACTG ELEMENT RIM2-M262	transposon CACTG element Rim2-M262			7	AP003745: 7,225-14,730.	 Other						GO:0032196 - transposition		
16576	RIM2-M263	Rim2-M263	TRANSPOSON CACTG ELEMENT RIM2-M263	transposon CACTG element Rim2-M263			4	AL662966: 11,2640-120,311.	 Other						GO:0032196 - transposition		
16577	RIM2-M264	Rim2-M264	TRANSPOSON CACTG ELEMENT RIM2-M264	transposon CACTG element Rim2-M264			1	AP003536: 115,404-123,843.	 Other						GO:0032196 - transposition		
16578	RIM2-M265	Rim2-M265	TRANSPOSON CACTG ELEMENT RIM2-M265	transposon CACTG element Rim2-M265			7	AP003847: 37,092-45,937.	 Other						GO:0032196 - transposition		
16579	RIM2-M266	Rim2-M266	TRANSPOSON CACTG ELEMENT RIM2-M266	transposon CACTG element Rim2-M266			4	AL606990: 34,665-43,552.	 Other						GO:0032196 - transposition		
16580	RIM2-M267	Rim2-M267	TRANSPOSON CACTG ELEMENT RIM2-M267	transposon CACTG element Rim2-M267			4	AL662974: 67,157-76,269.	 Other						GO:0032196 - transposition		
16581	RIM2-M268	Rim2-M268	TRANSPOSON CACTG ELEMENT RIM2-M268	transposon CACTG element Rim2-M268			10	AC093178: 79,086-88,562.	 Other						GO:0032196 - transposition		
16582	RIM2-M269	Rim2-M269	TRANSPOSON CACTG ELEMENT RIM2-M269	transposon CACTG element Rim2-M269			1	AP004641: 8,171-17,669.	 Other						GO:0032196 - transposition		
16583	RIM2-M270	Rim2-M270	TRANSPOSON CACTG ELEMENT RIM2-M270	transposon CACTG element Rim2-M270			1	AP003856: 28,401-37,985.	 Other						GO:0032196 - transposition		
16584	RIM2-M271	Rim2-M271	TRANSPOSON CACTG ELEMENT RIM2-M271	transposon CACTG element Rim2-M271			4	AL606997: 43,950-53,821.	 Other						GO:0032196 - transposition		
16585	RIM2-M272	Rim2-M272	TRANSPOSON CACTG ELEMENT RIM2-M272	transposon CACTG element Rim2-M272			4	AL662966: 96,231-106,213.	 Other						GO:0032196 - transposition		
16586	RIM2-M273	Rim2-M273	TRANSPOSON CACTG ELEMENT RIM2-M273	transposon CACTG element Rim2-M273			10	AC113336: 123,806-133,818.	 Other						GO:0032196 - transposition		
16587	RIM2-M274	Rim2-M274	TRANSPOSON CACTG ELEMENT RIM2-M274	transposon CACTG element Rim2-M274			1	AP003578: 126,041-136,197.	 Other						GO:0032196 - transposition		
16588	RIM2-M275	Rim2-M275	TRANSPOSON CACTG ELEMENT RIM2-M275	transposon CACTG element Rim2-M275			4	AL662966: 81,551-91,765.	 Other						GO:0032196 - transposition		
16589	RIM2-M276	Rim2-M276	TRANSPOSON CACTG ELEMENT RIM2-M276	transposon CACTG element Rim2-M276			4	AL606654: 43,380-53,843.	 Other						GO:0032196 - transposition		
16590	RIM2-M277	Rim2-M277	TRANSPOSON CACTG ELEMENT RIM2-M277	transposon CACTG element Rim2-M277			3	AF377947: 118,445-128,996.	 Other						GO:0032196 - transposition		
16591	RIM2-M278	Rim2-M278	TRANSPOSON CACTG ELEMENT RIM2-M278	transposon CACTG element Rim2-M278			1	AP003312: 8,578-19,133.	 Other						GO:0032196 - transposition		
16592	RIM2-M279	Rim2-M279	TRANSPOSON CACTG ELEMENT RIM2-M279	transposon CACTG element Rim2-M279			4	AL731609: 157,968-168,645.	 Other						GO:0032196 - transposition		
16593	RIM2-M280	Rim2-M280	TRANSPOSON CACTG ELEMENT RIM2-M280	transposon CACTG element Rim2-M280			10	AC083943: 118,893-129,592.	 Other						GO:0032196 - transposition		
16594	RIM2-M281	Rim2-M281	TRANSPOSON CACTG ELEMENT RIM2-M281	transposon CACTG element Rim2-M281			7	AP005479: 85,317-96,023.	 Other						GO:0032196 - transposition		
16595	RIM2-M282	Rim2-M282	TRANSPOSON CACTG ELEMENT RIM2-M282	transposon CACTG element Rim2-M282			4	AL662951: 75,783-86,524.	 Other						GO:0032196 - transposition		
16596	RIM2-M283	Rim2-M283	TRANSPOSON CACTG ELEMENT RIM2-M283	transposon CACTG element Rim2-M283			10	AC073392: 70,300-81,089	 Other						GO:0032196 - transposition		
16597	RIM2-M284	Rim2-M284	TRANSPOSON CACTG ELEMENT RIM2-M284	transposon CACTG element Rim2-M284			10	AC123594: 48,177-58,969.	 Other						GO:0032196 - transposition		
16598	RIM2-M285	Rim2-M285	TRANSPOSON CACTG ELEMENT RIM2-M285	transposon CACTG element Rim2-M285			4	AL662958: 65,811-76,647.	 Other						GO:0032196 - transposition		
16599	RIM2-M286	Rim2-M286	TRANSPOSON CACTG ELEMENT RIM2-M286	transposon CACTG element Rim2-M286			1	AP003536: 97,665-108,513.	 Other						GO:0032196 - transposition		
16600	RIM2-M287	Rim2-M287	TRANSPOSON CACTG ELEMENT RIM2-M287	transposon CACTG element Rim2-M287			1	AP003054: 83,382-94,263.	 Other						GO:0032196 - transposition		
16601	RIM2-M288	Rim2-M288	TRANSPOSON CACTG ELEMENT RIM2-M288	transposon CACTG element Rim2-M288			1	AP003407: 91,858-10,278.	 Other						GO:0032196 - transposition		
16602	RIM2-M289	Rim2-M289	TRANSPOSON CACTG ELEMENT RIM2-M289	transposon CACTG element Rim2-M289			4	AL662979: 30,187-41,143.	 Other						GO:0032196 - transposition		
16603	RIM2-M290	Rim2-M290	TRANSPOSON CACTG ELEMENT RIM2-M290	transposon CACTG element Rim2-M290			1	AP003215: 35,967-46,928.	 Other						GO:0032196 - transposition		
16604	RIM2-M291	Rim2-M291	TRANSPOSON CACTG ELEMENT RIM2-M291	transposon CACTG element Rim2-M291			4	AL663011: 78,813-89,779.	 Other						GO:0032196 - transposition		
16605	RIM2-M292	Rim2-M292	TRANSPOSON CACTG ELEMENT RIM2-M292	transposon CACTG element Rim2-M292			4	AL662958: 148,890-159,861.	 Other						GO:0032196 - transposition		
16606	RIM2-M293	Rim2-M293	TRANSPOSON CACTG ELEMENT RIM2-M293	transposon CACTG element Rim2-M293			4	AL731587: 127,455-138,432.	 Other						GO:0032196 - transposition		
16607	RIM2-M294	Rim2-M294	TRANSPOSON CACTG ELEMENT RIM2-M294	transposon CACTG element Rim2-M294			10	AC131967: 73,909-84,893.	 Other						GO:0032196 - transposition		
16608	RIM2-M295	Rim2-M295	TRANSPOSON CACTG ELEMENT RIM2-M295	transposon CACTG element Rim2-M295			1	AP003563: 101,336-112,344.	 Other						GO:0032196 - transposition		
16609	RIM2-M296	Rim2-M296	TRANSPOSON CACTG ELEMENT RIM2-M296	transposon CACTG element Rim2-M296			1	AP004359: 71,418-82,128.	 Other						GO:0032196 - transposition		
16610	RIM2-M297	Rim2-M297	TRANSPOSON CACTG ELEMENT RIM2-M297	transposon CACTG element Rim2-M297			1	AP004357: 115,254-126,266.	 Other						GO:0032196 - transposition		
16611	RIM2-M298	Rim2-M298	TRANSPOSON CACTG ELEMENT RIM2-M298	transposon CACTG element Rim2-M298			4	AL662999: 28,920-39,935.	 Other						GO:0032196 - transposition		
16612	RIM2-M299	Rim2-M299	TRANSPOSON CACTG ELEMENT RIM2-M299	transposon CACTG element Rim2-M299			4	AL662972: 63,123-74,152.	 Other						GO:0032196 - transposition		
16613	RIM2-M300	Rim2-M300	TRANSPOSON CACTG ELEMENT RIM2-M300	transposon CACTG element Rim2-M300			4	AL663018: 62,074-73,107.	 Other						GO:0032196 - transposition		
16614	RIM2-M301	Rim2-M301	TRANSPOSON CACTG ELEMENT RIM2-M301	transposon CACTG element Rim2-M301			4	AL606602: 113,554-124,590.	 Other						GO:0032196 - transposition		
16615	RIM2-M302	Rim2-M302	TRANSPOSON CACTG ELEMENT RIM2-M302	transposon CACTG element Rim2-M302			3	AC107619: 70,061-81,117.	 Other						GO:0032196 - transposition		
16616	RIM2-M303	Rim2-M303	TRANSPOSON CACTG ELEMENT RIM2-M303	transposon CACTG element Rim2-M303			1	AP004610: 55,768-66,838.	 Other						GO:0032196 - transposition		
16617	RIM2-M304	Rim2-M304	TRANSPOSON CACTG ELEMENT RIM2-M304	transposon CACTG element Rim2-M304			1	AP003236: 54,363-65,497.	 Other						GO:0032196 - transposition		
16618	RIM2-M305	Rim2-M305	TRANSPOSON CACTG ELEMENT RIM2-M305	transposon CACTG element Rim2-M305			7	AP003806: 2,728-13,864.	 Other						GO:0032196 - transposition		
16619	RIM2-M306	Rim2-M306	TRANSPOSON CACTG ELEMENT RIM2-M306	transposon CACTG element Rim2-M306			1	AP003215: 21,015-32,155.	 Other						GO:0032196 - transposition		
16620	RIM2-M307	Rim2-M307	TRANSPOSON CACTG ELEMENT RIM2-M307	transposon CACTG element Rim2-M307			1	AP003310: 1,264-12,416.	 Other						GO:0032196 - transposition		
16621	RIM2-M308	Rim2-M308	TRANSPOSON CACTG ELEMENT RIM2-M308	transposon CACTG element Rim2-M308			4	AL662985: 8,754-19,931.	 Other						GO:0032196 - transposition		
16622	RIM2-M309	Rim2-M309	TRANSPOSON CACTG ELEMENT RIM2-M309	transposon CACTG element Rim2-M309			7	AP005465: 6,218-17,402.	 Other						GO:0032196 - transposition		
16623	RIM2-M310	Rim2-M310	TRANSPOSON CACTG ELEMENT RIM2-M310	transposon CACTG element Rim2-M310			1	AP004614: 76,268-87,453.	 Other						GO:0032196 - transposition		
16624	RIM2-M311	Rim2-M311	TRANSPOSON CACTG ELEMENT RIM2-M311	transposon CACTG element Rim2-M311			1	AP003562: 25,312-36,504.	 Other						GO:0032196 - transposition		
16625	RIM2-M312	Rim2-M312	TRANSPOSON CACTG ELEMENT RIM2-M312	transposon CACTG element Rim2-M312			1	AP002873: 108,890-120,093.	 Other						GO:0032196 - transposition		
16626	RIM2-M313	Rim2-M313	TRANSPOSON CACTG ELEMENT RIM2-M313	transposon CACTG element Rim2-M313			1	AP003287: 87,882-99,118.	 Other						GO:0032196 - transposition		
16627	RIM2-M314	Rim2-M314	TRANSPOSON CACTG ELEMENT RIM2-M314	transposon CACTG element Rim2-M314			10	AC104615: 43,388-54,684.	 Other						GO:0032196 - transposition		
16628	RIM2-M315	Rim2-M315	TRANSPOSON CACTG ELEMENT RIM2-M315	transposon CACTG element Rim2-M315			7	AP005307: 81,400-92,718.	 Other						GO:0032196 - transposition		
16629	RIM2-M316	Rim2-M316	TRANSPOSON CACTG ELEMENT RIM2-M316	transposon CACTG element Rim2-M316			10	AC105746: 55,048-66,369.	 Other						GO:0032196 - transposition		
16630	RIM2-M317	Rim2-M317	TRANSPOSON CACTG ELEMENT RIM2-M317	transposon CACTG element Rim2-M317			4	AL731598: 19,136-30,573.	 Other						GO:0032196 - transposition		
16631	RIM2-M318	Rim2-M318	TRANSPOSON CACTG ELEMENT RIM2-M318	transposon CACTG element Rim2-M318			4	AL662974: 7,968-19,408.	 Other						GO:0032196 - transposition		
16632	RIM2-M319	Rim2-M319	TRANSPOSON CACTG ELEMENT RIM2-M319	transposon CACTG element Rim2-M319			4	AL606629: 39,618-51,108.	 Other						GO:0032196 - transposition		
16633	RIM2-M320	Rim2-M320	TRANSPOSON CACTG ELEMENT RIM2-M320	transposon CACTG element Rim2-M320			1	AP003333: 147,363-158,905.	 Other						GO:0032196 - transposition		
16634	RIM2-M321	Rim2-M321	TRANSPOSON CACTG ELEMENT RIM2-M321	transposon CACTG element Rim2-M321			4	AL662960: 78,303-89,972.	 Other						GO:0032196 - transposition		
16635	RIM2-M322	Rim2-M322	TRANSPOSON CACTG ELEMENT RIM2-M322	transposon CACTG element Rim2-M322			4	AL663018: 78,983-90,660.	 Other						GO:0032196 - transposition		
16636	RIM2-M323	Rim2-M323	TRANSPOSON CACTG ELEMENT RIM2-M323	transposon CACTG element Rim2-M323			10	AC131375: 103,501-115,367.	 Other						GO:0032196 - transposition		
16637	RIM2-M324	Rim2-M324	TRANSPOSON CACTG ELEMENT RIM2-M324	transposon CACTG element Rim2-M324			4	AL731631: 66,222-78,173.	 Other						GO:0032196 - transposition		
16638	RIM2-M325	Rim2-M325	TRANSPOSON CACTG ELEMENT RIM2-M325	transposon CACTG element Rim2-M325			1	AP004232: 11,031-22,982.	 Other						GO:0032196 - transposition		
16639	RIM2-M326	Rim2-M326	TRANSPOSON CACTG ELEMENT RIM2-M326	transposon CACTG element Rim2-M326			1	AP004223: 67,071-79,276.	 Other						GO:0032196 - transposition		
16640	RIM2-M327	Rim2-M327	TRANSPOSON CACTG ELEMENT RIM2-M327	transposon CACTG element Rim2-M327			4	AL731630: 89,067-101,459.	 Other						GO:0032196 - transposition		
16641	RIM2-M328	Rim2-M328	TRANSPOSON CACTG ELEMENT RIM2-M328	transposon CACTG element Rim2-M328			1	AP003298: 91,303-104,074.	 Other						GO:0032196 - transposition		
16642	RIM2-M329	Rim2-M329	TRANSPOSON CACTG ELEMENT RIM2-M329	transposon CACTG element Rim2-M329			10	AC116603: 104,939-118,950.	 Other						GO:0032196 - transposition		
16643	RIM2-M330	Rim2-M330	TRANSPOSON CACTG ELEMENT RIM2-M330	transposon CACTG element Rim2-M330			1	AP003018: 96,098-110,133.	 Other						GO:0032196 - transposition		
16644	RIM2-M331	Rim2-M331	TRANSPOSON CACTG ELEMENT RIM2-M331	transposon CACTG element Rim2-M331			10	AC104615: 57,580-71,871.	 Other						GO:0032196 - transposition		
16645	RIM2-M332	Rim2-M332	TRANSPOSON CACTG ELEMENT RIM2-M332	transposon CACTG element Rim2-M332			1	AP004232: 106,627-121,178.	 Other						GO:0032196 - transposition		
16646	RIM2-M333	Rim2-M333	TRANSPOSON CACTG ELEMENT RIM2-M333	transposon CACTG element Rim2-M333			1	AP003414: 31,860-46,485.	 Other						GO:0032196 - transposition		
16647	RIM2-M334	Rim2-M334	TRANSPOSON CACTG ELEMENT RIM2-M334	transposon CACTG element Rim2-M334			4	AL607002: 49,383-64,013.	 Other						GO:0032196 - transposition		
16648	RIM2-M335	Rim2-M335	TRANSPOSON CACTG ELEMENT RIM2-M335	transposon CACTG element Rim2-M335			10	AC104616: 95,497-110,309.	 Other						GO:0032196 - transposition		
16649	RIM2-M336	Rim2-M336	TRANSPOSON CACTG ELEMENT RIM2-M336	transposon CACTG element Rim2-M336			4	AL731637: 20,934-35,854.	 Other						GO:0032196 - transposition		
16650	RIM2-M337	Rim2-M337	TRANSPOSON CACTG ELEMENT RIM2-M337	transposon CACTG element Rim2-M337			7	AP005448: 75,874-91,050.	 Other						GO:0032196 - transposition		
16651	RIM2-M338	Rim2-M338	TRANSPOSON CACTG ELEMENT RIM2-M338	transposon CACTG element Rim2-M338			10	AC105932: 41,189-56,474.	 Other						GO:0032196 - transposition		
16652	RIM2-M339	Rim2-M339	TRANSPOSON CACTG ELEMENT RIM2-M339	transposon CACTG element Rim2-M339			1	AP003449: 124,022-139,705.	 Other						GO:0032196 - transposition		
16653	RIM2-M340	Rim2-M340	TRANSPOSON CACTG ELEMENT RIM2-M340	transposon CACTG element Rim2-M340			4	AL731629: 33,160-50,382.	 Other						GO:0032196 - transposition		
16654	RIM2-M341	Rim2-M341	TRANSPOSON CACTG ELEMENT RIM2-M341	transposon CACTG element Rim2-M341			4	AL606989: 78,621-98,505.	 Other						GO:0032196 - transposition		
16655	RIM2-M342	Rim2-M342	TRANSPOSON CACTG ELEMENT RIM2-M342	transposon CACTG element Rim2-M342			1	AP003217: 11,997-34,056.	 Other						GO:0032196 - transposition		
16656	RIM2-M343	Rim2-M343	TRANSPOSON CACTG ELEMENT RIM2-M343	transposon CACTG element Rim2-M343			4	AL662972: 111,865-142,985.	 Other						GO:0032196 - transposition		
16657	RIM2-M344	Rim2-M344	TRANSPOSON CACTG ELEMENT RIM2-M344	transposon CACTG element Rim2-M344			10	AC097278: 65,627-108,179.	 Other						GO:0032196 - transposition		
16658	_	RgMADS1	_					AF002254. a MADS box gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0006022 - floral organ development trait	
16659	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin			8	JN016859.	 Other						GO:0032196 - transposition		
16660	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin			12	JN016857.	 Other						GO:0032196 - transposition		
16661	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin			11	JN016855.	 Other						GO:0032196 - transposition		
16662	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin				JN016853.	 Other						GO:0032196 - transposition		
16663	GAIJIN-OS1	Gaijin-Os1	GAIJIN-OS1 ELEMENT	Gaijin-Os1 element, MITE Gaijin-Os1, miniature inverted repeat transposable element Gaijin-Os1			8	Gaijin-Os1 is located in the first intron of the O. sativa 4-coumarate-CoA ligase gene (Os08g0245200).  U61383 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16664	GAIJIN-OS2	Gaijin-Os2	GAIJIN-OS2 ELEMENT	Gaijin-Os2 element, MITE Gaijin-Os2, miniature inverted repeat transposable element Gaijin-Os2			2	Gaijin-Os2 is located in the 5' of Serine carboxypeptidase (Cbp3, RICCBP3, D10985, Os02g0114200). 	 Other						GO:0032196 - transposition		
16665	GAIJIN-OS3	Gaijin-Os3	GAIJIN-OS3 ELEMENT	Gaijin-Os3 element, MITE Gaijin-Os3, miniature inverted repeat transposable element Gaijin-Os3			5	Gaijin-Os3 is located in the 5' of Aspartic protease (RICAP, D32165, Os05g0567100). 	 Other						GO:0032196 - transposition		
16666	GAIJIN-OS4	Gaijin-Os4	GAIJIN-OS4 ELEMENT	Gaijin-Os4 element, MITE Gaijin-Os4, miniature inverted repeat transposable element Gaijin-Os4				Gaijin-Os4 is located in EST RICC107591. 	 Other						GO:0032196 - transposition		
16667	CASTAWAY-OS1	Castaway-Os1	CASTAWAY-OS1 ELEMENT	Castaway-Os1 element, MITE Castaway-Os1, miniature inverted repeat transposable element Castaway-Os1			1	Castaway-Os1 is located in 5' of Salt tolerance protein (SalT, Os01g0348900). 	 Other						GO:0032196 - transposition		
16668	CASTAWAY-OS2	Castaway-Os2	CASTAWAY-OS2 ELEMENT	Castaway-Os2 element, MITE Castaway-Os2, miniature inverted repeat transposable element Castaway-Os2			7	Castaway-Os2 is located in 5' of Thioredoxin h (RICRTH, D26547, Os07g0186000). 	 Other						GO:0032196 - transposition		
16669	DITTO-OS1	Ditto-Os1	DITTO-OS1 ELEMENT	Ditto-Os1 element, MITE Ditto-Os1, miniature inverted repeat transposable element Ditto-Os1			1	Ditto-Os1 is located in 5' of 16.9 kDa HSP (RICHSEA, M80938, Os01g0136100). 	 Other						GO:0032196 - transposition		
16670	DITTO-OS2	Ditto-Os2	DITTO-OS2 ELEMENT	Ditto-Os2 element, MITE Ditto-Os2, miniature inverted repeat transposable element Ditto-Os2			3	Ditto-Os2 is located in 5' of Homeobox (OSH1, RICOSH1, D16507, Os03g0727000). 	 Other						GO:0032196 - transposition		
16671	WANDERER-OS1	Wanderer-Os1	WANDERER-OS1 ELEMENT	Wanderer-Os1 element, MITE Wanderer-Os1, miniature inverted repeat transposable element Wanderer-Os1			2	Wanderer-Os1 is located in intron 1 of HMGR (RIC3H3M, L28995, Os02g0713900). 	 Other						GO:0032196 - transposition		
16672	WANDERER-OS2	Wanderer-Os2	WANDERER-OS2 ELEMENT	Wanderer-Os2 element, MITE Wanderer-Os2, miniature inverted repeat transposable element Wanderer-Os2			2	Wanderer-Os2 is located in 5' of HMGR (RIC3H3M, L28995, Os02g0713900). 	 Other						GO:0032196 - transposition		
16673	WANDERER-OS3	Wanderer-Os3	WANDERER-OS3 ELEMENT	Wanderer-Os3 element, MITE Wanderer-Os3, miniature inverted repeat transposable element Wanderer-Os3			10	Wanderer-Os3 is located in 5' of Prepro-glutelin (RICGLUTE, D00584, Os10g0400200). 	 Other						GO:0032196 - transposition		
16674	WANDERER-OS4	Wanderer-Os4	WANDERER-OS4 ELEMENT	Wanderer-Os4 element, MITE Wanderer-Os4, miniature inverted repeat transposable element Wanderer-Os4				Wanderer-Os4 is located in 5' of a-Amylase (OSALAM). 	 Other						GO:0032196 - transposition		
16675	WANDERER-OS5	Wanderer-Os5	WANDERER-OS5 ELEMENT	Wanderer-Os5 element, MITE Wanderer-Os5, miniature inverted repeat transposable element Wanderer-Os5			12	Wanderer-Os5 is located in 5' of H3 Histone pseudogene (OSHIS3PS, AA749776, Os12g0415800). 	 Other						GO:0032196 - transposition		
16676	WANDERER-OL1	Wanderer-Ol1	WANDERER-OL1 ELEMENT	Wanderer-Ol1 element, MITE Wanderer-Ol1, miniature inverted repeat transposable element Wanderer-Ol1			11	Wanderer-Ol1 is located in U34601.  Oryza longistaminata Wanderer.	 Other						GO:0032196 - transposition		
16677	EXPLORER-OS1	Explorer-Os1	EXPLORER-OS1 ELEMENT	Explorer-Os1 element, MITE Explorer-Os1, miniature inverted repeat transposable element Explorer-Os1			1	Explorer-Os1 is located in 5' of 16.9 kDa HSP (RICHSEA, M80938, Os01g0136100).	 Other						GO:0032196 - transposition		
16678	EXPLORER-OS2	Explorer-Os2	EXPLORER-OS2 ELEMENT	Explorer-Os2 element, MITE Explorer-Os2, miniature inverted repeat transposable element Explorer-Os2			7	Explorer-Os2 is located in 5' of Thioredoxin h (RICRTH, D26547, Os07g0186000).	 Other						GO:0032196 - transposition		
16679	EXPLORER-OS3	Explorer-Os3	EXPLORER-OS3 ELEMENT	Explorer-Os3 element, MITE Explorer-Os3, miniature inverted repeat transposable element Explorer-Os3			5	Explorer-Os3 is located in STS (RICG1103A, D25363).	 Other						GO:0032196 - transposition		
16680	_	Ret1	_	transposale element Ret1				D14534 (O. longistaminata).	 Other						GO:0032196 - transposition		
16681	_	Tnr2	_	transposale element Tnr2				D14534 (O. rufipogon).	 Other						GO:0032196 - transposition		
16682	_		_	58K antigen			5	D15585.		Os05g0540300	LOC_Os05g46290.1				GO:0005524 - ATP binding, GO:0042026 - protein refolding, GO:0046686 - response to cadmium ion, GO:0005774 - vacuolar membrane		
16683	_		_	58K antigen, HypB protein			10	D15815, D15688.		Os10g0462900	LOC_Os10g32550.1				GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0042026 - protein refolding		
16684	_	OsARFA1d, ARFA1d	_	ADP-ribosylation factor 1, ADP-ribosylation factor 4, ADP-ribosylation factor A1d			7	D23603. D22513. LOC_Os07g12200. OsARFA1d in Muthamilarasan et al. 2016.		Os07g0223400 	LOC_Os07g12200.1				GO:0005794 - Golgi apparatus, GO:0005773 - vacuole, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0009506 - plasmodesma, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane		
16685	_	OsARFA1f, ARFA1f	_	ADP-ribosylation factor 2B, ADP-ribosylation factor A1f			3	D15833. LOC_Os03g59740. OsARFA1f in Muthamilarasan et al. 2016.		Os03g0811900	LOC_Os03g59740.5, LOC_Os03g59740.3, LOC_Os03g59740.2, LOC_Os03g59740.1				GO:0005525 - GTP binding, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0005773 - vacuole		
16686	_		_	Alcohol dehydrogenase (NADP(+))			10	D15481. Q7G764.	 Biochemical character	Os10g0113000	LOC_Os10g02380.1				GO:0016491 - oxidoreductase activity		
16687	_		_	Arginine;tRNA ligase			5	D16052.	 Biochemical character	Os05g0163000	LOC_Os05g07030.3, LOC_Os05g07030.2, LOC_Os05g07030.1				GO:0004814 - arginine-tRNA ligase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0006420 - arginyl-tRNA aminoacylation		
16688	_		_	Aspartate aminotransferase			1	D16032. P37833.	 Biochemical character	Os01g0760600	LOC_Os01g55540.2, LOC_Os01g55540.1				GO:0005737 - cytoplasm, GO:0006103 - 2-oxoglutarate metabolic process, GO:0006522 - alanine metabolic process, GO:0006531 - aspartate metabolic process, GO:0009058 - biosynthetic process, GO:0006536 - glutamate metabolic process, GO:0010150 - leaf senescence, GO:0006807 - nitrogen compound metabolic process, GO:0006099 - tricarboxylic acid cycle, GO:0016020 - membrane, GO:0005777 - peroxisome, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity, GO:0030170 - pyridoxal phosphate binding		
16689	_		_	Aspartate aminotransferase			2	D16037.	 Biochemical character	Os02g0236000	LOC_Os02g14110.1				GO:0006520 - cellular amino acid metabolic process, GO:0046686 - response to cadmium ion, GO:0005507 - copper ion binding, GO:0009058 - biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity		
16690	_		_	Awd protein			10	D15996.	 Biochemical character	Os10g0563700	LOC_Os10g41410.2, LOC_Os10g41410.1				GO:0006228 - UTP biosynthetic process, GO:0006183 - GTP biosynthetic process, GO:0006241 - CTP biosynthetic process, GO:0004550 - nucleoside diphosphate kinase activity, GO:0005524 - ATP binding		
16691	_		_	cystathine gamma-lyase			6	D16091. GO:0071266: 'de novo' L-methionine biosynthetic process.	 Biochemical character	Os06g0175800	LOC_Os06g07960.1, LOC_Os06g07860.1				GO:0030170 - pyridoxal phosphate binding, GO:0004121 - cystathionine beta-lyase activity		
16692	_		_	Dihydrodipicolinate synthase			4	D15614. 	 Biochemical character	Os04g0254000	LOC_Os04g18200.1				GO:0008840 - dihydrodipicolinate synthase activity, GO:0009089 - lysine biosynthetic process via diaminopimelate		
16693	CCR10	OsCCR10, CCR10	CINNAMOYL-COA REDUCTASE 10	Dihydrofolate-4-reductase, Cinnamoyl-CoA reductase 10, OsCINNAMOYL-COENZYME A REDUCTASE10, CINNAMOYL-COENZYME A REDUCTASE 10	CINNAMOYL-COA REDUCTASE 10		2	LOC_Os02g56700. D15642. 	 Biochemical character	Os02g0811800	LOC_Os02g56700.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0009809 - lignin biosynthetic process, GO:0044237 - cellular metabolic process		
16694	_	OsEno2, Eno2	_	enolase, enolase 2			3	D15980. OsEno2 in Fukayama et al. 2014.	 Biochemical character	Os03g0248600	LOC_Os03g14450.2, LOC_Os03g14450.1				GO:0000015 - phosphopyruvate hydratase complex, GO:0005507 - copper ion binding, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0009416 - response to light stimulus, GO:0009409 - response to cold, GO:0006096 - glycolysis, GO:0005740 - mitochondrial envelope, GO:0009737 - response to abscisic acid stimulus, GO:0046686 - response to cadmium ion, GO:0048046 - apoplast, GO:0004634 - phosphopyruvate hydratase activity, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0000287 - magnesium ion binding		
16695	_	PAL03, OsPAL8	_	Phenylalanine ammonia-lyase			11	GO:0080167: response to karrikin. LOC_Os11g48110. OsPAL8 in Tonnessen et al. 2014.	 Biochemical character	Os11g0708900	LOC_Os11g48110.1				GO:0006559 - L-phenylalanine catabolic process, GO:0046274 - lignin catabolic process, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0010224 - response to UV-B, GO:0009819 - drought recovery, GO:0009800 - cinnamic acid biosynthetic process, GO:0009555 - pollen development, GO:0006979 - response to oxidative stress, GO:0046244 - salicylic acid catabolic process, GO:0005737 - cytoplasm	TO:0000074 - blast disease	
16696	_	Snl6, OsCCR2, CCR2	_	suppressor of BTH-induced, NH1-mediated lesion mimic 6, Cinnamoyl-CoA reductase 2			1	Cinnamoyl CoA-Reductase (CCR)-Like Gene Family member. LOC_Os01g45200.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0639200	LOC_Os01g45200.1				GO:0006694 - steroid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	
16697	_		_	beta-1, 3-glucanase			2		 Biochemical character,  Tolerance and resistance	Os02g0832500	LOC_Os02g58560.3, LOC_Os02g58560.1				GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0006952 - defense response	TO:0000179 - biotic stress trait	
16698	LAC11	Lac, OsLAC11, LAC10, OsLAC10	LACCASE 11	lactase, laccase 11	LACCASE 11		3	Q10ND7. GO:0052716: hydroquinone:oxygen oxidoreductase activity. LAC10 in Swetha et al. 2018.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0273200	LOC_Os03g16610.1				GO:0010038 - response to metal ion, GO:0006952 - defense response, GO:0005507 - copper ion binding, GO:0009414 - response to water deprivation, GO:0009809 - lignin biosynthetic process, GO:0048046 - apoplast, GO:0046274 - lignin catabolic process, GO:0046686 - response to cadmium ion	TO:0000034 - chromium sensitivity, TO:0000179 - biotic stress trait	
16699	_	OsM6PR1, OsM6PR2, M6PR, OsS6PDH, S6PDH	_	NADPH-dependent mannose-6-phosphate reductase, NADPH-dependent mannose-6-phosphate reductase 1, NADPH-dependent mannose-6-phosphate reductase 2, sorbitol-6-phosphate dehydrogenase			2	D41273, D48175.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0123500	LOC_Os02g03100.2, LOC_Os02g03100.1				GO:0016491 - oxidoreductase activity, GO:0006970 - response to osmotic stress, GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
16700	_	OsFAD2-2	_	fatty acid desaturase 2-2, microsomal delta-12 fatty acid desaturase2-2			7		 Biochemical character	Os07g0417200	LOC_Os07g23430.1				GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, GO:0006629 - lipid metabolic process		
16701	_	OsFAD2-3	_	fatty acid desaturase 2-3, microsomal delta-12 fatty acid desaturase2-3			7		 Biochemical character	Os07g0416900	LOC_Os07g23410.2, LOC_Os07g23410.1				GO:0006629 - lipid metabolic process, GO:0045485 - omega-6 fatty acid desaturase activity, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water		
16702	_	OsFAD2-4	_	fatty acid desaturase 2-4, microsomal delta-12 fatty acid desaturase2-4			7		 Biochemical character	Os07g0416700	LOC_Os07g23390.1				GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, GO:0006629 - lipid metabolic process		
16703	_	OsKMD1, OsFbox074, OsFbox74, Os_F0323	_	KISS ME DEADLY1, KISS ME DEADLY 1, F-box protein 74			2	LOC_Os02g11790. Os_F0323 in Hua et al. 2011.		Os02g0208700	LOC_Os02g11790.1						
16704	_	OsKMD2, OsFbox314, Os_F0507	_	KISS ME DEADLY2, KISS ME DEADLY 2, F-box protein 314			6	LOC_Os06g39370. Os_F0507 in Hua et al. 2011.		Os06g0594400	LOC_Os06g39370.1					TO:0000167 - cytokinin sensitivity	
16705	_	OsKMD3, OsFbox096, OsFbox96, Os_F0169	_	KISS ME DEADLY3, KISS ME DEADLY 3, F-box protein 96			2	LOC_Os02g35530. Os_F0169 in Hua et al. 2011.		Os02g0563000	LOC_Os02g35530.1						
16706	_	OsKMD4, OsFbox596, Os_F0436	_	KISS ME DEADLY4, KISS ME DEADLY 4, F-box protein 596			11	LOC_Os11g14140. Os_F0436 in Hua et al. 2011.		Os11g0246200	LOC_Os11g14140.1						
16707	_	OsRPK1	_	leucine-rich repeat receptor-like kinase 1			5	a Ca2+-independent Ser/Thr kinase. GO:0060918: auxin transport.	 Vegetative organ - Root	Os05g0486100	LOC_Os05g40770.2, LOC_Os05g40770.1				GO:0048364 - root development, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0000163 - auxin sensitivity, TO:0002672 - auxin content, TO:0000656 - root development trait, TO:0000346 - tiller number	
16708	PHI1	OsPHI-1, PHI-1	PHOSPHATE-INDUCED PROTEIN 1	phosphate-induced protein 1	PHOSPHATE-INDUCED PROTEIN 1		2	an extracellular protein with a putative ATP-binding domain. homologous to tobacco phosphateinduced protein 1 (PHI-1) and Arabidopsis EXORDIUM (EXO). 		Os02g0757100	LOC_Os02g52040.1				GO:0009733 - response to auxin stimulus, GO:0001666 - response to hypoxia, GO:0005794 - Golgi apparatus, GO:0009505 - plant-type cell wall, GO:0009741 - response to brassinosteroid stimulus, GO:0016049 - cell growth, GO:0040007 - growth, GO:0000226 - microtubule cytoskeleton organization	TO:0000163 - auxin sensitivity, TO:0002684 - plant cell size, TO:0002677 - brassinosteroid sensitivity	
16709	_		_	MAP65/ASE family protein			8			Os08g0531100	LOC_Os08g41890.2, LOC_Os08g41890.1				GO:0009832 - plant-type cell wall biogenesis, GO:0000226 - microtubule cytoskeleton organization, GO:0000910 - cytokinesis, GO:0031122 - cytoplasmic microtubule organization		
16710	_	OsARGOS	_				4	an ARGOS orthologous gene. Q7X6L2. GO:0071368: cellular response to cytokinin stimulus.		Os04g0444300	LOC_Os04g36670.1				GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0008284 - positive regulation of cell proliferation, GO:0007275 - multicellular organismal development, GO:0005783 - endoplasmic reticulum, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0071365 - cellular response to auxin stimulus, GO:0046622 - positive regulation of organ growth, GO:0030307 - positive regulation of cell growth		
16711	_	SWL1	_	SNOW-WHITE LEAF1, SNOW-WHITE LEAF 1		swl1, swl1-v, swl1-stb, SWL1-W, swl1-R, swl1-sx1, swl1-sx2, swl1-sx3, swl1-sx4	4	an unknown protein with the N-terminal chloroplast transit peptide. a variegated albino mutant.	 Vegetative organ - Leaf,  Coloration	Os04g0497900	LOC_Os04g42030.1				GO:0048366 - leaf development, GO:0009507 - chloroplast, GO:0009535 - chloroplast thylakoid membrane, GO:0009790 - embryonic development, GO:0009658 - chloroplast organization	TO:0000655 - leaf development trait, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000069 - variegated leaf	
16712	_	OsMYB14, MYB14, JAdMYB1	_	MYB transcription factor 14, JA-dependent MYB1			1	ABA-dependent, growth regulatory and stress-responsive MYB transcription factor.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0702700	LOC_Os01g50720.1				GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0010224 - response to UV-B, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000152 - panicle number, TO:0000346 - tiller number, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000601 - UV-B light sensitivity	
16713	MIR820D	miR820d, osa-miR820d, osa-MIR820d	MICRORNA820D	MICRORNA820d, osa-miRNA820d	_		8	target: Os03g0110800 (DRM2). predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0016442 - RNA-induced silencing complex, GO:0009651 - response to salt stress, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
16714	MIR820E	miR820e, osa-miR820e, osa-MIR820e	MICRORNA820E	MICRORNA820e, osa-miRNA820e	_		2	target: Os03g0110800 (DRM2). predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
16715	_	CADL	_	cinnamyl alcohol dehydrogenase-like			1		 Biochemical character	Os01g0528800	LOC_Os01g34480.3, LOC_Os01g34480.2, LOC_Os01g34480.1				GO:0005794 - Golgi apparatus, GO:0005829 - cytosol, GO:0003824 - catalytic activity, GO:0009807 - lignan biosynthetic process, GO:0005886 - plasma membrane, GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding, GO:0009506 - plasmodesma	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
16716	_	OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5	_	ferulate 5-hydroxylase 1, Coniferaldehyde 5-hydroxylase 1			10		 Biochemical character	Os10g0512400	LOC_Os10g36848.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009807 - lignan biosynthetic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0009808 - lignin metabolic process, GO:0010229 - inflorescence development, GO:0044036 - cell wall macromolecule metabolic process	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000576 - stem length, TO:0000180 - spikelet fertility, TO:0006036 - stem elongation, TO:0000621 - inflorescence development trait	PO:0007089 - stem elongation stage , PO:0001083 - inflorescence development stage 
16717	_	C4H1, OsC4H1, OsC4H, C4H	_	cinnamate 4-hydroxylase 1			2		 Biochemical character	Os02g0467600	LOC_Os02g26810.1				GO:0004497 - monooxygenase activity, GO:0009807 - lignan biosynthetic process, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
16718	_	C4H2, OsC4H, OsC4HL, C4H	_	cinnamate 4-hydroxylase 2, C4H-like gene, Cinnamate-4-Hydroxylase like gene			5	GO:0080167: response to karrikin. AB207105. a Cytochrome P450-Dependent Monooxygenase. LOC_Os05g25640. Trans-cinnamate 4-mono-oxygenase.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0320700	LOC_Os05g25640.1				GO:0005794 - Golgi apparatus, GO:0046688 - response to copper ion, GO:0010266 - response to vitamin B1, GO:0005783 - endoplasmic reticulum, GO:0005774 - vacuolar membrane, GO:0005506 - iron ion binding, GO:0005886 - plasma membrane, GO:0006952 - defense response, GO:0009505 - plant-type cell wall, GO:0009506 - plasmodesma, GO:0009555 - pollen development, GO:0009611 - response to wounding, GO:0004497 - monooxygenase activity, GO:0040007 - growth, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009699 - phenylpropanoid biosynthetic process, GO:0009807 - lignan biosynthetic process, GO:0009808 - lignin metabolic process	TO:0000733 - lignin biosynthesis trait, TO:0000021 - copper sensitivity, TO:0000731 - lignin content, TO:0000112 - disease resistance	
16719	_	HCT3	_	hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 3			9		 Biochemical character	Os09g0422000	LOC_Os09g25460.1				GO:0009807 - lignan biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
16720	_	C3H1, C3'H, OsC3H1, OsC3'H	_	p-coumaroyl shikimate/quinate 3-hydroxylase 1			5	GO:0072548: dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity. GO:0072551: diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity. GO:0072549: monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity. GO0072552: monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity. GO:0072547: tricoumaroylspermidine meta-hydroxylase activity. GO:0072550: triferuloylspermidine meta-hydroxylase activity.	 Biochemical character	Os05g0494000	LOC_Os05g41440.2, LOC_Os05g41440.1				GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0009809 - lignin biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0020037 - heme binding, GO:0046409 - p-coumarate 3-hydroxylase activity, GO:0009805 - coumarin biosynthetic process, GO:0005506 - iron ion binding, GO:0005739 - mitochondrion, GO:0008216 - spermidine metabolic process	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
16721	CCR19	OsCCR19	CINNAMOYL-COA REDUCTASE 19	cinnamoyl CoA reductase 19	CINNAMOYL-COA REDUCTASE 19		9	LOC_Os09g25150.	 Biochemical character	Os09g0419200	LOC_Os09g25150.3, LOC_Os09g25150.2, LOC_Os09g25150.1				GO:0044237 - cellular metabolic process, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0009807 - lignan biosynthetic process	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
16722	CCR21	OsCCR21	CINNAMOYL-COA REDUCTASE 21	cinnamoyl CoA reductase 21	CINNAMOYL-COA REDUCTASE 21		2	LOC_Os02g08420. Dihydroflavonol-4-reductase.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0180700	LOC_Os02g08420.1				GO:0046688 - response to copper ion, GO:0006952 - defense response, GO:0003824 - catalytic activity, GO:0009807 - lignan biosynthetic process, GO:0009409 - response to cold, GO:0009411 - response to UV, GO:0050832 - defense response to fungus, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0042742 - defense response to bacterium	TO:0000021 - copper sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000112 - disease resistance, TO:0000731 - lignin content, TO:0000074 - blast disease, TO:0000160 - UV light sensitivity, TO:0000303 - cold tolerance, TO:0000733 - lignin biosynthesis trait	
16723	_	TXNL4B, Dim2, DLP	_	thioredoxin-like protein 4B			11		 Other	Os11g0297900	LOC_Os11g19220.1				GO:0005681 - spliceosomal complex, GO:0007067 - mitosis		
16724	_	AST	_	Aspartate aminotransferase			2		 Biochemical character	Os02g0797500 	LOC_Os02g55420.1				GO:0009941 - chloroplast envelope, GO:0046686 - response to cadmium ion, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity, GO:0030170 - pyridoxal phosphate binding, GO:0010319 - stromule, GO:0006520 - cellular amino acid metabolic process, GO:0009058 - biosynthetic process, GO:0048046 - apoplast, GO:0009409 - response to cold, GO:0009570 - chloroplast stroma		
16725	_	Rubisco-L	_	Rubisco large subunit			6	gi:115468792. Os06g0598500  (in Rap1 (build3), Rap2 (build4)).	 Biochemical character						GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0000287 - magnesium ion binding		
16727	TABITOI	TabitoI	TRANSPOSON MITE TABITO I	MITE element Tabito I, Tabito I MITE transposon, transposable element Tabito I, Tabito I			6	AB077830.	 Other						GO:0032196 - transposition		
16728	TABITOII	TabitoII	TRANSPOSON MITE TABITO II	MITE element Tabito II, Tabito II MITE transposon, transposable element Tabito II, Tabito II			6	AB077831.	 Other						GO:0032196 - transposition		
16729	TABITOIII	TabitoIII	TRANSPOSON MITE TABITO III	MITE element Tabito III, Tabito III MITE transposon, transposable element Tabito III, Tabito III			6	AB078024.	 Other						GO:0032196 - transposition		
16730	TABITOIV	TabitoIV	TRANSPOSON MITE TABITO IV	MITE element Tabito IV, Tabito IV MITE transposon, transposable element Tabito IV, Tabito IV			6	AB078025.	 Other						GO:0032196 - transposition		
16731	TABITOV	TabitoV	TRANSPOSON MITE TABITO V	MITE element Tabito V, Tabito V MITE transposon, transposable element Tabito V, Tabito V			6	AB078025.	 Other						GO:0032196 - transposition		
16732	TABITOVI	TabitoVI	TRANSPOSON MITE TABITO VI	MITE element Tabito VI, Tabito VI MITE transposon, transposable element Tabito VI, Tabito VI			6	AB077833.	 Other						GO:0032196 - transposition		
16733	KISERUI	KiseruI	TRANSPOSON MITE KISERU I	MITE element Kiseru I, Kiseru I MITE transposon, transposable element Kiseru I, Kiseru I			6	AB077834.	 Other						GO:0032196 - transposition		
16734	KISERUII	KiseruII	TRANSPOSON MITE KISERU II	MITE element Kiseru II, Kiseru II MITE transposon, transposable element Kiseru II, Kiseru II			6	AB077835.	 Other						GO:0032196 - transposition		
16735	KISERUIII	KiseruIII	TRANSPOSON MITE KISERU III	MITE element Kiseru III, Kiseru III MITE transposon, transposable element Kiseru III, Kiseru III			6	AB077836.	 Other						GO:0032196 - transposition		
16736	KISERUIV	KiseruIV	TRANSPOSON MITE KISERU IV	MITE element Kiseru IV, Kiseru IV MITE transposon, transposable element Kiseru IV, Kiseru IV			6	AB077837.	 Other						GO:0032196 - transposition		
16737	AKAN	Akan	TRANSPOSON MITE AKAN	MITE element Akan, Akan MITE transposon, transposable element Akan			6	AB077838.	 Other						GO:0032196 - transposition		
16738	SAROMA	Saroma	TRANSPOSON MITE SAROMA	MITE element Saroma, Saroma MITE transposon, transposable element Saroma			6	AB077840.	 Other						GO:0032196 - transposition		
16739	SHIKOTSU	Shikotsu	TRANSPOSON MITE SHIKOTSU	MITE element Shikotsu, Shikotsu MITE transposon, transposable element Shikotsu			6	AB077841.	 Other						GO:0032196 - transposition		
16740	TOYA	Toya	TRANSPOSON MITE TOYA	MITE element Toya, Toya MITE transposon, transposable element Toya			6	AB077842.	 Other						GO:0032196 - transposition		
16741	MOIWA	Moiwa	TRANSPOSON MITE MOIWA	MITE element Moiwa, Moiwa MITE transposon, transposable element Moiwa			6	AB077843.	 Other						GO:0032196 - transposition		
16742	RISHIRI	Rishiri	TRANSPOSON MITE RISHIRI	MITE element Rishiri, Rishiri MITE transposon, transposable element Rishiri			6	AB077844.	 Other						GO:0032196 - transposition		
16743	SHARI	Shari	TRANSPOSON MITE SHARI	MITE element Shari, Shari MITE transposon, transposable element Shari			6	AB077845.	 Other						GO:0032196 - transposition		
16744	TAISETSU	Taisetsu	TRANSPOSON MITE TAISETSU	MITE element Taisetsu, Taisetsu MITE transposon, transposable element Taisetsu			6	AB077846.	 Other						GO:0032196 - transposition		
16745	TEINE	Teine	TRANSPOSON MITE TEINE	MITE element Teine, Teine MITE transposon, transposable element Teine			6	AB077847.	 Other						GO:0032196 - transposition		
16746	TENGU	Tengu	TRANSPOSON MITE TENGU	MITE element Tengu, Tengu MITE transposon, transposable element Tengu			6	AB077848.	 Other						GO:0032196 - transposition		
16747	YOUTEI	Youtei	TRANSPOSON MITE YOUTEI	MITE element Youtei, Youtei MITE transposon, transposable element Youtei			6	AB077849.	 Other						GO:0032196 - transposition		
16748	ONAGAI	OnagaI	MU-LIKE TRANSPOSABLE ELEMENT ONAGA I	Mu-like transposable element Onaga I			6		 Other						GO:0032196 - transposition		
16749	ONAGAII	OnagaII	MU-LIKE TRANSPOSABLE ELEMENT ONAGA II	Mu-like transposable element Onaga II			6		 Other						GO:0032196 - transposition		
16750	BASHO	Basho	TRANSPOSON BASHO	Basho element, Basho transposon, transposable element Basho					 Other						GO:0032196 - transposition		
16751	STOW-I	Stow-I	TRANSPOSON MITE STOWAWAY-I	Stowaway-I, MITE element Stowaway-I, Stowaway-I MITE transposon, transposable element Stowaway-I					 Other						GO:0032196 - transposition		
16752	STOW-II	Stow-II	TRANSPOSON MITE STOWAWAY-II	Stowaway-II, MITE element Stowaway-II, Stowaway-II MITE transposon, transposable element Stowaway-II					 Other						GO:0032196 - transposition		
16753	STOW-III	Stow-III	TRANSPOSON MITE STOWAWAY-III	Stowaway-III, MITE element Stowaway-III, Stowaway-III MITE transposon, transposable element Stowaway-III					 Other						GO:0032196 - transposition		
16754	STOW-IV	Stow-IV	TRANSPOSON MITE STOWAWAY-IV	Stowaway-IV, MITE element Stowaway-IV, Stowaway-IV MITE transposon, transposable element Stowaway-IV					 Other						GO:0032196 - transposition		
16755	STOW-V	Stow-V	TRANSPOSON MITE STOWAWAY-V	Stowaway-V, MITE element Stowaway-V, Stowaway-V MITE transposon, transposable element Stowaway-V					 Other						GO:0032196 - transposition		
16756	STOW-VI	Stow-VI	TRANSPOSON MITE STOWAWAY-VI	Stowaway-VI, MITE element Stowaway-VI, Stowaway-VI MITE transposon, transposable element Stowaway-VI					 Other						GO:0032196 - transposition		
16757	STOW-VII	Stow-VII	TRANSPOSON MITE STOWAWAY-VII	Stowaway-VII, MITE element Stowaway-VII, Stowaway-VII MITE transposon, transposable element Stowaway-VII					 Other						GO:0032196 - transposition		
16758	STOW-VIII	Stow-VIII	TRANSPOSON MITE STOWAWAY-VIII	Stowaway-VIII, MITE element Stowaway-VIII, Stowaway-VIII MITE transposon, transposable element Stowaway-VIII					 Other						GO:0032196 - transposition		
16759	STOW-IX	Stow-IX	TRANSPOSON MITE STOWAWAY-IX	Stowaway-IX, MITE element Stowaway-IX, Stowaway-IX MITE transposon, transposable element Stowaway-IX					 Other						GO:0032196 - transposition		
16760	STOW-X	Stow-X	TRANSPOSON MITE STOWAWAY-X	Stowaway-X, MITE element Stowaway-X, Stowaway-X MITE transposon, transposable element Stowaway-X					 Other						GO:0032196 - transposition		
16761	_	MULE-I	_	Mutator-like element I					 Other						GO:0032196 - transposition		
16762	_	MULE-IV	_	Mutator-like element IV					 Other						GO:0032196 - transposition		
16763	MERMITE	Mermite	MU-LIKE TRANSPOSABLE ELEMENT MERMITE	Mu-like transposable element Mermite			6		 Other						GO:0032196 - transposition		
16764	_	PFP, OscPGM, cPGM	_	"fructose-6-phosphate 1-phosphotransferase, cytosolic phosphoglucomutase, \"phosphoglucomutase, cytoplasmic 2\""			3	LOC_Os03g50480.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0712700	LOC_Os03g50480.2, LOC_Os03g50480.1				GO:0004614 - phosphoglucomutase activity, GO:0048046 - apoplast, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0009408 - response to heat, GO:0005975 - carbohydrate metabolic process, GO:0000287 - magnesium ion binding, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0046688 - response to copper ion, GO:0048229 - gametophyte development	TO:0000021 - copper sensitivity, TO:0000432 - temperature response trait	
16765	_	MDH	_	malate dehydrogenase			8	BF889474.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0434300	LOC_Os08g33720.1				GO:0009941 - chloroplast envelope, GO:0010319 - stromule, GO:0009408 - response to heat, GO:0030060 - L-malate dehydrogenase activity, GO:0006099 - tricarboxylic acid cycle, GO:0005774 - vacuolar membrane, GO:0005739 - mitochondrion, GO:0009753 - response to jasmonic acid stimulus, GO:0048046 - apoplast, GO:0044262 - cellular carbohydrate metabolic process, GO:0009409 - response to cold, GO:0006108 - malate metabolic process	TO:0000432 - temperature response trait, TO:0000172 - jasmonic acid sensitivity	
16766	_	OsBCH2, BCH2, OsHYD1, HYD1	_	beta-Carotene Hydroxylase 2, carotene beta-ring hydroxylase 1			4	a carotenoid-related heat-responsive gene. LOC_Os04g48880.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0578400	LOC_Os04g48880.1				GO:0009408 - response to heat, GO:0005506 - iron ion binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0006633 - fatty acid biosynthetic process	TO:0000432 - temperature response trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
16767	RPT5B	OsRpt5b, Rpt5b	19S REGULATORY PARTICLE ATPASE SUBUNIT 5B	19S regulatory particle ATPase subunit 5b, RP triple A-ATPase 5b	19S REGULATORY PARTICLE ATPASE SUBUNIT 5B		6	a ubiquitin-proteasome system (UPS) gene. a 19S regulatory particle subunit from the rice 26S proteasome. C71991. AB071016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0173100	LOC_Os06g07630.1	GR:0061410			GO:0030163 - protein catabolic process, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0017111 - nucleoside-triphosphatase activity, GO:0000502 - proteasome complex, GO:0005524 - ATP binding	TO:0000432 - temperature response trait	
16768	_		_	proteasome			9	a ubiquitin-proteasome system (UPS) gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0560200	LOC_Os09g38730.1				GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0017111 - nucleoside-triphosphatase activity	TO:0000432 - temperature response trait	
16769	_	DHQS, OsDHQS	_	3-dehydroquinate synthase			9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0539100	LOC_Os09g36800.1				GO:0005794 - Golgi apparatus, GO:0009570 - chloroplast stroma, GO:0005768 - endosome, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0003856 - 3-dehydroquinate synthase activity, GO:0005802 - trans-Golgi network, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16770	_	DHQDT/SDH, OsDHQDT/SDH, OsDHQDT, OsSDH, DHQDT, SDH, DHQ/SDH-1	_	3-dehydroquinate dehydratase/shikimate dehydrogenase			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0375200	LOC_Os01g27750.1				GO:0003855 - 3-dehydroquinate dehydratase activity, GO:0009411 - response to UV, GO:0004764 - shikimate 5-dehydrogenase activity	TO:0000160 - UV light sensitivity	
16771	_	DHQDT/SDH	_	3-dehydroquinate dehydratase/shikimate dehydrogenase			12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0534000	LOC_Os12g34874.3, LOC_Os12g34874.2, LOC_Os12g34874.1				GO:0009570 - chloroplast stroma, GO:0009793 - embryonic development ending in seed dormancy, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16772	_	CS, OsCS	_	chorismate synthase			3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0254800	LOC_Os03g14990.1				GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009570 - chloroplast stroma, GO:0009423 - chorismate biosynthetic process, GO:0005730 - nucleolus, GO:0009411 - response to UV, GO:0004107 - chorismate synthase activity	TO:0000160 - UV light sensitivity	
16773	_	CM, OsCM	_	chorismate mutase			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0764400	LOC_Os01g55870.1				GO:0004106 - chorismate mutase activity, GO:0046417 - chorismate metabolic process, GO:0009411 - response to UV, GO:0000162 - tryptophan biosynthetic process, GO:0042742 - defense response to bacterium	TO:0000160 - UV light sensitivity	
16774	_	ADT	_	arogenate dehydratase			10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0523700	LOC_Os10g37980.1				GO:0009411 - response to UV, GO:0004664 - prephenate dehydratase activity, GO:0009094 - L-phenylalanine biosynthetic process	TO:0000160 - UV light sensitivity	
16775	_	IGPS	_	indole-3-glycerol phosphate synthase			9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0255400	LOC_Os09g08130.2, LOC_Os09g08130.1				GO:0006568 - tryptophan metabolic process, GO:0004425 - indole-3-glycerol-phosphate synthase activity, GO:0009411 - response to UV, GO:0009414 - response to water deprivation	TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance	
16776	_	TS	_	tryptophan synthase			8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0135900	LOC_Os08g04180.1				GO:0009941 - chloroplast envelope, GO:0006979 - response to oxidative stress, GO:0009411 - response to UV, GO:0004834 - tryptophan synthase activity, GO:0005886 - plasma membrane, GO:0009570 - chloroplast stroma, GO:0009651 - response to salt stress	TO:0000160 - UV light sensitivity	
16777	_	TS	_	tryptophan synthase			6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0632200	LOC_Os06g42560.4, LOC_Os06g42560.3, LOC_Os06g42560.2, LOC_Os06g42560.1				GO:0004834 - tryptophan synthase activity, GO:0030170 - pyridoxal phosphate binding, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16778	_	OsC4H	_	cytochrome P450, CINNAMATE-4-HYDROXYLASE			2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0467000	LOC_Os02g26770.1				GO:0020037 - heme binding, GO:0009809 - lignin biosynthetic process, GO:0009411 - response to UV, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding	TO:0000160 - UV light sensitivity	
16779	_	CHS, OsPKS02, OsPKS2, PKS02, PKS2	_	Chalcone synthase, polyketide synthase 2			4	LOC_Os04g01354.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0103900	LOC_Os04g01354.1				GO:0009058 - biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16780	_	CHS, OsPKS12, PKS12	_	Chalcone synthase, polyketide synthase 12			7	LOC_Os07g31770.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0501100	LOC_Os07g31770.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009411 - response to UV, GO:0009058 - biosynthetic process	TO:0000160 - UV light sensitivity	
16781	_	CHI, OsCHI	_	chalcone isomerase, Chalcone-flavonone isomerase			12	GO:0080167: response to karrikin. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0115700	LOC_Os12g02370.2, LOC_Os12g02370.4				GO:0050832 - defense response to fungus, GO:0009411 - response to UV, GO:0009813 - flavonoid biosynthetic process, GO:0045430 - chalcone isomerase activity, GO:0006952 - defense response, GO:0046688 - response to copper ion	TO:0000160 - UV light sensitivity, TO:0000021 - copper sensitivity, TO:0000112 - disease resistance, TO:0000074 - blast disease	
16782	_	CHI	_	chalcone isomerase			11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0116300	LOC_Os11g02440.1				GO:0009813 - flavonoid biosynthetic process, GO:0045430 - chalcone isomerase activity, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16783	_	FLS, 2-ODD17, Os2-ODD17, 2ODD17, Os2ODD17	_	flavonol synthase, 2-oxoglutarate-dependent dioxygenase 17			10	LOC_Os10g41020.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0559500	LOC_Os10g41020.1				GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16784	_	FLS, 2-ODD2, Os2-ODD2, 2ODD2, Os2ODD2, OsF3H, F3H	_	flavonol synthase, 2-oxoglutarate-dependent dioxygenase 2, flavanone 3-hydroxylase			3		 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os03g0122300	LOC_Os03g03034.1, LOC_Os03g03034.2, LOC_Os03g03034.3, LOC_Os03g03034.5, LOC_Os03g03034.4				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity, GO:0002213 - defense response to insect, GO:0009411 - response to UV, GO:0009617 - response to bacterium, GO:0009620 - response to fungus, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	TO:0000290 - flavonoid content, TO:0000424 - brown planthopper resistance, TO:0000160 - UV light sensitivity	
16785	_	DHFR	_	dihydroflavonol 4-reductase			7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0601100	LOC_Os07g40986.2, LOC_Os07g40986.1				GO:0044237 - cellular metabolic process, GO:0009411 - response to UV, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding	TO:0000160 - UV light sensitivity	
16786	_	DHFR	_	dihydroflavonol 4-reductase			7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0602000	LOC_Os07g41070.1				GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16787	_	DHFR	_	dihydroflavonol 4-reductase, NADPH HC-toxin reductase			6	D29716.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0651000	LOC_Os06g44170.2, LOC_Os06g44170.1				GO:0044237 - cellular metabolic process, GO:0003824 - catalytic activity, GO:0009411 - response to UV, GO:0050662 - coenzyme binding	TO:0000160 - UV light sensitivity	
16788	_	OMT	_	O-methyltransferase			11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0303600	LOC_Os11g19840.1				GO:0009411 - response to UV, GO:0008171 - O-methyltransferase activity	TO:0000160 - UV light sensitivity	
16791	NTMC2T6.2	OsNTMC2T6.2	N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.2	C2 domain containing protein, N-terminal-TM-C2 domain protein 6.2, N-terminal trans- membrane and C2 domain protein 6.2, NTMC2 type 6.2 protein, NTMC2 family gene 6.2	N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.2		2	LOC_Os02g20970. a calcium-signaling component.	 Tolerance and resistance - Stress tolerance	Os02g0313700	LOC_Os02g20970.1				GO:0009414 - response to water deprivation, GO:0009411 - response to UV, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0005783 - endoplasmic reticulum	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000160 - UV light sensitivity	
16792	_		_	SHR5-receptor-like kinase			8	a rice ortholog of Arabidopsis SHR5.	 Tolerance and resistance - Stress tolerance	Os08g0203700	LOC_Os08g10330.1				GO:0009411 - response to UV, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000160 - UV light sensitivity	
16793	_		_	Leucine-rich repeat-containing protein kinase family protein			4		 Tolerance and resistance - Stress tolerance	Os04g0616600	LOC_Os04g52630.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16794	_		_	SHR5-receptor-like kinase			5		 Tolerance and resistance - Stress tolerance	Os05g0261700	LOC_Os05g17604.6, LOC_Os05g17604.5, LOC_Os05g17604.4, LOC_Os05g17604.3, LOC_Os05g17604.2, LOC_Os05g17604.1				GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16795	_		_	Rab GDP dissociation inhibitor alpha			7		 Tolerance and resistance - Stress tolerance	Os07g0271000	LOC_Os07g16970.2, LOC_Os07g16970.1				GO:0015031 - protein transport, GO:0009411 - response to UV, GO:0005093 - Rab GDP-dissociation inhibitor activity	TO:0000160 - UV light sensitivity	
16796	_		_	ranbp1 domain containing protein			3		 Tolerance and resistance - Stress tolerance	Os03g0292800	LOC_Os03g18180.1				GO:0009411 - response to UV, GO:0046907 - intracellular transport	TO:0000160 - UV light sensitivity	
16797	_	UDP-GT, Os79	_	UDP-glucuronyl transferase, UDP-glucosyltransferase			4	BF889487. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0206600	LOC_Os04g12970.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009314 - response to radiation, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0000172 - jasmonic acid sensitivity, TO:0000161 - radiation response trait	
16798	_	UDP-GT, OsENOD93-1	_	UDP-glucuronyl transferase, early nodulin 93 gene 1			6	LOC_Os06g05010. TO:0020093: nitrogen content. TO:0000905: seed yield.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0142350	LOC_Os06g05010.2, LOC_Os06g05010.1				GO:0006865 - amino acid transport, GO:0006995 - cellular response to nitrogen starvation, GO:0009314 - response to radiation, GO:0005739 - mitochondrion, GO:0043562 - cellular response to nitrogen levels	TO:0000011 - nitrogen sensitivity, TO:0002673 - amino acid content, TO:0000161 - radiation response trait	
16799	_	UNP1	_				4		 Tolerance and resistance - Stress tolerance	Os04g0627900	LOC_Os04g53606.1				GO:0009314 - response to radiation, GO:0003743 - translation initiation factor activity	TO:0000161 - radiation response trait	
16800	_		_				1		 Tolerance and resistance - Stress tolerance	Os01g0280500	LOC_Os01g17330.2, LOC_Os01g17330.1				GO:0007229 - integrin-mediated signaling pathway, GO:0042256 - mature ribosome assembly, GO:0042273 - ribosomal large subunit biogenesis, GO:0043022 - ribosome binding, GO:0003743 - translation initiation factor activity, GO:0005730 - nucleolus, GO:0005737 - cytoplasm, GO:0043023 - ribosomal large subunit binding, GO:0009314 - response to radiation	TO:0000161 - radiation response trait	
16801	_	GID1, GID1L2	_	ga insensitive dwarf1, ga insensitive dwarf 1			3	GID1L2 in Li et al. 2016. LOC_Os03g57640. GA receptor.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0790500	LOC_Os03g57640.1				GO:0016787 - hydrolase activity, GO:0009314 - response to radiation, GO:0008152 - metabolic process	TO:0000161 - radiation response trait	
16802	_	UNP2	_				12	LOC_Os12g27930.	 Tolerance and resistance - Stress tolerance	Os12g0465000	LOC_Os12g27930.1				GO:0009314 - response to radiation	TO:0000161 - radiation response trait	
16804	_	OsFbox001, OsFbox1, Os_F0615, OsFBX1	_	F-box protein 1			1	LOC_Os01g05880. Os_F0615 in Hua et al. 2011. OsFBX1 in TIGR rice genome annotation.		Os01g0152100	LOC_Os01g05880.1						
16805	_	OsFbox002, OsFbox2	_	F-box protein 2			1	LOC_Os01g05970. Q7GBK0/Q9LGH4.	 Other	Os01g0152900/Os01g0153100					GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly		
16806	_	OsFbox003, OsFbox3, Os_F0209, OsFBX3	_	F-box protein 3			1	LOC_Os01g07160. Os_F0209 in Hua et al. 2011. OsFBX3 in TIGR rice genome annotation.		Os01g0165666	LOC_Os01g07160.1						
16807	_	OsFbox004, OsFbox4, Os_F0387	_	F-box protein 4			1	LOC_Os01g08830. Os_F0387 in Hua et al. 2011.		Os01g0183800	LOC_Os01g08830.2, LOC_Os01g08830.1						
16808	_	OsFbox005, OsFbox5, Os_F0747, OsFBX4	_	F-box protein 5			1	LOC_Os01g14270. Os_F0747 in Hua et al. 2011. OsFBX4 in TIGR rice genome annotation.		Os01g0244900/Os01g0244966							
16809	_	OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12	_	F-box protein 6			1	LOC_Os01g17390. Os_F0083 in Hua et al. 2011. OsFBX5 in TIGR rice genome annotation. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0281000	LOC_Os01g17390.1						PO:0009066 - anther 
16810	_	OsFbox007, OsFbox7, Os_F0351	_	F-box protein 7			1	LOC_Os01g22400 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0351 in Hua et al. 2011.									
16811	_	OsFbox008, OsFbox8, Os_F0329	_	F-box protein 8			1	LOC_Os01g22430. Os_F0329 in Hua et al. 2011.		Os01g0327900	LOC_Os01g22430.1						
16812	_	OsFbox009, OsFbox9, Os_F0616	_	F-box protein 9			1	LOC_Os01g22480. Os_F0616 in Hua et al. 2011.		Os01g0328300	LOC_Os01g22480.2, LOC_Os01g22480.1						
16813	_	OsFbox010, OsFbox10, Os_F0156, OsFBX6	_	F-box protein 10			1	LOC_Os01g28150. Os_F0156 in Hua et al. 2011. OsFBX6 in TIGR rice genome annotation.		Os01g0379400	LOC_Os01g28150.2, LOC_Os01g28150.1						
16814	_	OsFbox011, OsFbox11, Os_F0196, OsFBX7	_	F-box protein 11			1	LOC_Os01g28300. Os_F0196 in Hua et al. 2011. OsFBX7 in TIGR rice genome annotation.		Os01g0380800	LOC_Os01g28300.1						
16815	_	OsFbox012, OsFbox12, Os_F0539, OsFBX8	_	F-box protein 12			1	LOC_Os01g28520. Os_F0539 in Hua et al. 2011. OsFBX8 in TIGR rice genome annotation.			LOC_Os01g28520						
16816	_	OsFbox013, OsFbox13, Os_F0590, OsFBX10	_	F-box protein 13			1	LOC_Os01g33490. Os_F0590 in Hua et al. 2011. OsFBX10 in TIGR rice genome annotation.		Os01g0519100	LOC_Os01g33490.1						
16817	_	OsFbox014, OsFbox14, Os_F0467, OsFBX11	_	F-box protein 14			1	LOC_Os01g34220. Os_F0467 in Hua et al. 2011. OsFBX11 in TIGR rice genome annotation.		Os01g0526550	LOC_Os01g34220.1						
16818	_	OsFbox015, OsFbox15, Os_F0481, OsFBX12	_	F-box protein 15			1	LOC_Os01g34270. Os_F0481 in Hua et al. 2011. OsFBX12 in TIGR rice genome annotation.		Os01g0526900	LOC_Os01g34270.1						
16819	_	OsFbox016, OsFbox16, Os_F0471, OsFBX13	_	F-box protein 16			1	LOC_Os01g36940. Os_F0471 in Hua et al. 2011. OsFBX13 in TIGR rice genome annotation.		Os01g0550200	LOC_Os01g36940.1						
16820	_	OsFbox017, OsFbox17, Os_F0392	_	F-box protein 17			1	LOC_Os01g37260. Os_F0392 in Hua et al. 2011.		Os01g0553400	LOC_Os01g37260.2, LOC_Os01g37260.1						
16821	_	OsFbox018, OsFbox18, Os_F0259	_	F-box protein 18			1	LOC_Os01g37670. Os_F0259 in Hua et al. 2011.		Os01g0557400	LOC_Os01g37670.1						
16822	_	OsFbox020, OsFbox20, Os_F0674	_	F-box protein 20			1	LOC_Os01g40160. Os_F0674 in Hua et al. 2011.		Os01g0583800	LOC_Os01g40160.1						
16823	_	OsFbox021, OsFbox21, Os_F0117	_	F-box protein 21			1	LOC_Os01g41250. Os_F0117 in Hua et al. 2011.	 Biochemical character		LOC_Os01g41250				GO:0016829 - lyase activity		
16824	_	OsFbox022, OsFbox22, Os_F0366	_	F-box protein 22			1	LOC_Os01g41260. Os_F0366 in Hua et al. 2011.	 Biochemical character	Os01g0595800	LOC_Os01g41260.1				GO:0016829 - lyase activity		
16825	_	OsFbox023, OsFbox23, Os_F0211, OsSTA20	_	F-box protein 23			1	LOC_Os01g41270. Os_F0211 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0595900	LOC_Os01g41270.1				GO:0016829 - lyase activity		PO:0009066 - anther 
16826	_	OsFbox024, OsFbox24, Os_F0087	_	F-box protein 24			1	LOC_Os01g41280. Os_F0087 in Hua et al. 2011.			LOC_Os01g41280						
16827	_	OsFbox026, OsFbox26, Os_F0242	_	F-box protein 26			1	LOC_Os01g41310. Os_F0242 in Hua et al. 2011.	 Biochemical character	Os01g0596300	LOC_Os01g41310.1				GO:0016829 - lyase activity		
16828	_	OsFbox027, OsFbox27, Os_F0595	_	F-box protein 27			1	LOC_Os01g41340. Os_F0595 in Hua et al. 2011.	 Biochemical character	Os01g0596500	LOC_Os01g41340.1				GO:0016829 - lyase activity		
16829	_	OsFbox028, OsFbox28, Os_F0158	_	F-box protein 28			1	LOC_Os01g41530. Os_F0158 in Hua et al. 2011.		Os01g0598400	LOC_Os01g41530.1						
16830	_	OsFbox029, OsFbox29, Os_F0384	_	F-box protein 29			1	LOC_Os01g45020. Os_F0384 in Hua et al. 2011.		Os01g0637100	LOC_Os01g45020.2, LOC_Os01g45020.1						
16831	_	OsFbox030, OsFbox30, Os_F0577	_	F-box protein 30			1	LOC_Os01g45650. Os_F0577 in Hua et al. 2011.		Os01g0644100	LOC_Os01g45650.1						
16832	_	OsFbox031, OsFbox31, Os_F0326	_	F-box protein 31			1	LOC_Os01g45900. Os_F0326 in Hua et al. 2011.		Os01g0647000	LOC_Os01g45900.1						
16833	_	OsFbox032, OsFbox32, Os_F0271	_	F-box protein 32			1	LOC_Os01g46500. Os_F0271 in Hua et al. 2011.		Os01g0653700	LOC_Os01g46500.4, LOC_Os01g46500.3, LOC_Os01g46500.2, LOC_Os01g46500.1						
16834	_	OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1	_	F-box protein 33, F-box Kelch 1			1	LOC_Os01g47050. Os_F0114 in Hua et al. 2011. Os01g47050 is one of the Arabidopsis HWS orthologues which is able to complement hws-1 mutant plants (Yu et al. 2015). TO:1000022: anther morphology trait.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0659900	LOC_Os01g47050.1				GO:0048653 - anther development, GO:0052386 - cell wall thickening, GO:0009414 - response to water deprivation, GO:0019005 - SCF ubiquitin ligase complex, GO:0009733 - response to auxin stimulus, GO:0048364 - root development	TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity	PO:0001004 - anther development stage , PO:0007520 - root development stage 
16835	_	OsFbox035, OsFbox35, Os_F0556	_	F-box protein 35			1	LOC_Os01g52970. Os_F0556 in Hua et al. 2011.	 Biochemical character	Os01g0730100	LOC_Os01g52970.1				GO:0016829 - lyase activity		
16836	_	OsFbox036, OsFbox36, Os_F0051	_	F-box protein 36			1	LOC_Os01g52980. Os_F0051 in Hua et al. 2011.		Os01g0730200	LOC_Os01g52980.1						
16837	_	OsFbox037, OsFbox37, Os_F0332	_	F-box protein 37			1	LOC_Os01g54850. Os_F0332 in Hua et al. 2011.		Os01g0752100	LOC_Os01g54850.1						
16838	_	OsFbox038, OsFbox38, Os_F0519	_	F-box protein 38			1	LOC_Os01g55210. Os_F0519 in Hua et al. 2011.			LOC_Os01g55210						
16839	_	OsFbox040, OsFbox40, Os_F0476	_	F-box protein 40			1	LOC_Os01g56390. Os_F0476 in Hua et al. 2011.		Os01g0770400	LOC_Os01g56390.1						
16840	_	OsFbox041, OsFbox41, Os_F0730	_	F-box protein 41			1	LOC_Os01g56710. Os_F0730 in Hua et al. 2011.			LOC_Os01g56710						
16841	_	OsFbox042, OsFbox42, Os_F0608	_	F-box protein 42			1	LOC_Os01g56740. Os_F0608 in Hua et al. 2011.			LOC_Os01g56740						
16842	_	OsFbox043, OsFbox43, Os_F0563	_	F-box protein 43			1	LOC_Os01g56750. Os_F0563 in Hua et al. 2011.		Os01g0774400	LOC_Os01g56750.1						
16843	_	OsFbox044, OsFbox44, Os_F0491	_	F-box protein 44			1	LOC_Os01g57920. Os_F0491 in Hua et al. 2011.		Os01g0789000	LOC_Os01g57920.1						
16844	_	OsFbox045, OsFbox45, Os_F0307	_	F-box protein 45			1	LOC_Os01g59180. Os_F0307 in Hua et al. 2011.		Os01g0806101/Os01g0806200							
16845	_	OsFbox046, OsFbox46, Os_F0609	_	F-box protein 46			1	LOC_Os01g59690. Os_F0609 in Hua et al. 2011.		Os01g0812200	LOC_Os01g59690.1						
16846	_	OsFbox047, OsFbox47, Os_F0754	_	F-box protein 47			1	LOC_Os01g59910. Os_F0754 in Hua et al. 2011.		Os01g0814700	LOC_Os01g59910.4, LOC_Os01g59910.3, LOC_Os01g59910.2, LOC_Os01g59910.1						
16847	_	OsFbox048, OsFbox48, Os_F0202	_	F-box protein 48			1	LOC_Os01g60920. Os_F0202 in Hua et al. 2011.		Os01g0824700	LOC_Os01g60920.1						
16848	_	OsFbox049, OsFbox49, Os_F0364	_	F-box protein 49			1	LOC_Os01g64030. Os_F0364 in Hua et al. 2011.		Os01g0859600	LOC_Os01g64030.4, LOC_Os01g64030.3, LOC_Os01g64030.2, LOC_Os01g64030.1						
16849	_	OsFbox051, OsFbox51, Os_F0330	_	F-box protein 51			1	LOC_Os01g65510. Os_F0330 in Hua et al. 2011.		Os01g0876300	LOC_Os01g65510.1						
16850	_	OsFbox052, OsFbox52, Os_F0755	_	F-box protein 52			1	LOC_Os01g69270. Os_F0755 in Hua et al. 2011.		Os01g0921800	LOC_Os01g69270.1						
16851	LC4	OsFbox053, OsFbox53, Os_F0309, OsLC4	LEAF INCLINCATION 4	F-box protein 53, LEAF INCLINCATION4			1	LOC_Os01g69940. Os_F0309 in Hua et al. 2011. miR394 target. GO:2000024: regulation of leaf development. TO:0000829: leaf lamina morphology trait.	 Vegetative organ - Leaf	Os01g0923900	LOC_Os01g69940.1				GO:0009733 - response to auxin stimulus, GO:0060776 - simple leaf morphogenesis, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0010305 - leaf vascular tissue pattern formation, GO:0001558 - regulation of cell growth, GO:0051510 - regulation of unidimensional cell growth, GO:0048366 - leaf development	TO:0002688 - leaf lamina joint bending, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle	PO:0009000 - pulvinus , PO:0009010 - seed , PO:0009005 - root 
16852	_	OsFbox054, OsFbox54, Os_F0420	_	F-box protein 54			1	LOC_Os01g71430. Os_F0420 in Hua et al. 2011.			LOC_Os01g71430						
16853	_	OsFbox055, OsFbox55, Os_F0463	_	F-box protein 55			1	LOC_Os01g71440. Os_F0463 in Hua et al. 2011.		Os01g0942000	LOC_Os01g71440.1						
16854	_	OsFbox056, OsFbox56, Os_F0469	_	F-box protein 56			1	LOC_Os01g71450. Os_F0469 in Hua et al. 2011.		Os01g0942100	LOC_Os01g71450.1						
16855	_	OsFbox057, OsFbox57, Os_F0570	_	F-box protein 57			1	LOC_Os01g71460. Os_F0570 in Hua et al. 2011.		Os01g0942200	LOC_Os01g71460.1						
16856	_	OsFbox058, OsFbox58, Os_F0591	_	F-box protein 58			1	LOC_Os01g72310. Os_F0591 in Hua et al. 2011.		Os01g0952200	LOC_Os01g72310.1				GO:0009506 - plasmodesma, GO:0008270 - zinc ion binding, GO:0004386 - helicase activity, GO:0003677 - DNA binding, GO:0005524 - ATP binding		
16857	_	OsFbox059, OsFbox59, Os_F0692	_	F-box protein 59			2	LOC_Os02g01550. Os_F0692 in Hua et al. 2011.		Os02g0105800	LOC_Os02g01550.2, LOC_Os02g01550.1						
16858	_	OsFbox060, OsFbox60, Os_F0125	_	F-box protein 60			2	LOC_Os02g02350. Os_F0125 in Hua et al. 2011.		Os02g0114600	LOC_Os02g02350.3, LOC_Os02g02350.2, LOC_Os02g02350.1				GO:0009409 - response to cold		
16859	_	OsFbox061, OsFbox61, Os_F0473	_	F-box protein 61			2	LOC_Os02g03660. Os_F0473 in Hua et al. 2011.		Os02g0129200	LOC_Os02g03660.1						
16860	_	OsFbox062, OsFbox62, Os_F0282	_	F-box protein 62			2	LOC_Os02g03810. Os_F0282 in Hua et al. 2011.		Os02g0130800	LOC_Os02g03810.1						
16861	_	OsFbox063, OsFbox63, Os_F0090	_	F-box protein 63			2	LOC_Os02g03910. Os_F0090 in Hua et al. 2011.		Os02g0131900	LOC_Os02g03910.1						
16862	_	OsFbox064, OsFbox64, Os_F0285	_	F-box protein 64			2	LOC_Os02g03980. Os_F0285 in Hua et al. 2011.		Os02g0132700	LOC_Os02g03980.1						
16863	_	OsFbox065, OsFbox65, Os_F0311	_	F-box protein 65			2	LOC_Os02g04000. Os_F0311 in Hua et al. 2011.		Os02g0132900	LOC_Os02g04000.1						
16864	_	OsFbox067, OsFbox67, Os_F0477	_	F-box protein 67, SCO1 protein			2	LOC_Os02g06470. D23448. Os_F0477 in Hua et al. 2011. cytochrome oxidase in Sasaki et al. 1994.		Os02g0159800	LOC_Os02g06470.1						
16865	_	OsFbox068, OsFbox68, Os_F0346	_	F-box protein 68			2	LOC_Os02g06520. Os_F0346 in Hua et al. 2011.		Os02g0160200	LOC_Os02g06520.1						
16866	_	OsFbox069, OsFbox69, Os_F0227	_	F-box protein 69			2	LOC_Os02g08160. Os_F0227 in Hua et al. 2011.		Os02g0178200	LOC_Os02g08160.1						
16867	_	OsFbox070, OsFbox70, Os_F0151	_	F-box protein 70			2	LOC_Os02g09580. Os_F0151 in Hua et al. 2011.		Os02g0188900	LOC_Os02g09580.1						
16868	_	OsFbox071, OsFbox71, Os_F0306	_	F-box protein 71			2	LOC_Os02g10600. Os_F0306 in Hua et al. 2011.		Os02g0199500	LOC_Os02g10600.1						
16869	_	OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2	_	F-box protein 72, EIN3-BINDING F-BOX PROTEIN 2			2	LOC_Os02g10700. Os_F0508 in Hua et al. 2011.		Os02g0200900	LOC_Os02g10700.1						
16870	_	OsFbox073, OsFbox73, Os_F0359	_	F-box protein 73			2	LOC_Os02g10850. Os_F0359 in Hua et al. 2011.		Os02g0202900	LOC_Os02g10850.1						
16871	_	OsFbox075, OsFbox75, Os_F0514	_	F-box protein 75			2	LOC_Os02g15160. Os_F0514 in Hua et al. 2011.		Os02g0249700	LOC_Os02g15160.1						
16872	_	OsFbox077, OsFbox77, Os_F0558	_	F-box protein 77			2	LOC_Os02g16760. Os_F0558 in Hua et al. 2011.			LOC_Os02g16760						
16873	_	OsFbox078, OsFbox78, Os_F0445	_	F-box protein 78			2	LOC_Os02g17180. Os_F0445 in Hua et al. 2011.			LOC_Os02g17180						
16874	_	OsFbox079, OsFbox79, Os_F0641	_	F-box protein 79			2	LOC_Os02g17210. Os_F0641 in Hua et al. 2011.		Os02g0272100	LOC_Os02g17210.1						
16875	_	OsFbox080, OsFbox80, Os_F0533	_	F-box protein 80			2	LOC_Os02g18630. Os_F0533 in Hua et al. 2011.		Os02g0287900	LOC_Os02g18630.1						
16876	_	OsFbox081, OsFbox81, Os_F0375	_	F-box protein 81			2	LOC_Os02g18640. Os_F0375 in Hua et al. 2011.		Os02g0288000	LOC_Os02g18640.1						
16877	_	OsFbox082, OsFbox82, Os_F0509	_	F-box protein 82			2	LOC_Os02g19200. Os_F0509 in Hua et al. 2011.		Os02g0294100	LOC_Os02g19200.1						
16878	_	OsFbox083, OsFbox83, Os_F0360	_	F-box protein 83			2	LOC_Os02g19540. Os_F0360 in Hua et al. 2011.		Os02g0297900	LOC_Os02g19540.1						
16879	_	OsFbox084, OsFbox84, Os_F0452	_	F-box protein 84			2	LOC_Os02g21110. Os_F0452 in Hua et al. 2011.		Os02g0316200	LOC_Os02g21110.1						
16880	_	OsFbox085, OsFbox85, Os_F0602	_	F-box protein 85			2	LOC_Os02g21230. Os_F0602 in Hua et al. 2011.			LOC_Os02g21230						
16881	_	OsFbox086, OsFbox86, Os_F0482	_	F-box protein 86			2	LOC_Os02g21240. Os_F0482 in Hua et al. 2011.		Os02g0317300	LOC_Os02g21240.1						
16882	_	OsFbox087, OsFbox87, Os_F0536	_	F-box protein 87			2	LOC_Os02g21260. Os_F0536 in Hua et al. 2011.		Os02g0317500	LOC_Os02g21260.1						
16883	_	OsFbox088, OsFbox88, Os_F0475	_	F-box protein 88			2	LOC_Os02g27400. Os_F0475 in Hua et al. 2011.		Os02g0474000	LOC_Os02g27400.1						
16884	_	OsFbox089, OsFbox89, Os_F0377	_	F-box protein 89			2	LOC_Os02g28600. Os_F0377 in Hua et al. 2011.		Os02g0487500/Os02g0487701							
16885	_	OsFbox091, OsFbox91, Os_F0517	_	F-box protein 91			2	LOC_Os02g30210. Os_F0517 in Hua et al. 2011.		Os02g0504900	LOC_Os02g30210.2, LOC_Os02g30210.1						
16886	_	OsFbox092, OsFbox92, Os_F0704	_	F-box protein 92			2	LOC_Os02g33240. Os_F0704 in Hua et al. 2011.		Os02g0535901	LOC_Os02g33240.1						
16887	_	OsFbox093, OsFbox93, Os_F0270	_	F-box protein 93			2	LOC_Os02g33310. Os_F0270 in Hua et al. 2011.		Os02g0536300	LOC_Os02g33310.1						
16888	_	OsFbox094, OsFbox94, Os_F0336	_	F-box protein 94			2	LOC_Os02g33400. Os_F0336 in Hua et al. 2011.		Os02g0537200	LOC_Os02g33400.1						
16889	_	OsFbox095, OsFbox95, Os_F0274, OsSTA64	_	F-box protein 95			2	LOC_Os02g33840. Os_F0274 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0543200	LOC_Os02g33840.1						PO:0009066 - anther 
16890	_	OsFbox097, OsFbox97, Os_F0402	_	F-box protein 97			2	LOC_Os02g35560. Os_F0402 in Hua et al. 2011.		Os02g0563800	LOC_Os02g35560.1						
16891	_	OsFbox098, OsFbox98, Os_F0174	_	F-box protein 98			2	LOC_Os02g36520. Os_F0174 in Hua et al. 2011.		Os02g0574900	LOC_Os02g36520.1						
16892	_	OsFbox099, OsFbox99, Os_F0180	_	F-box protein 99			2	LOC_Os02g38499. Os_F0180 in Hua et al. 2011.		Os02g0598600	LOC_Os02g38499.1						
16893	_	OsFbox100	_	F-box protein 100			2	LOC_Os02g38589. 		Os02g0598900	LOC_Os02g38589.1						
16894	_	OsFbox101, Os_F0678	_	F-box protein 101			2	LOC_Os02g38720. Os_F0678 in Hua et al. 2011.			LOC_Os02g38720						
16895	_	OsFbox102, Os_F0177	_	F-box protein 102			2	LOC_Os02g38720. Os_F0678 in Hua et al. 2011.		Os02g0630000	LOC_Os02g41910.1						
16896	_	OsFbox103, Os_F0039	_	F-box protein 103			2	LOC_Os02g41930. Os_F0039 in Hua et al. 2011.		Os02g0630200	LOC_Os02g41930.1						
16897	_	OsFbox105, Os_F0549	_	F-box protein 105			2	LOC_Os02g45320. Os_F0549 in Hua et al. 2011.		Os02g0675800	LOC_Os02g45320.1						
16898	_	OsFbox106, Os_F0496	_	F-box protein 106			2	LOC_Os02g46690. Os_F0496 in Hua et al. 2011.		Os02g0694100	LOC_Os02g46690.1						
16899	_	OsFbox108, Os_F0236	_	F-box protein 108			2	LOC_Os02g48300. Os_F0236 in Hua et al. 2011.		Os02g0713500	LOC_Os02g48300.1						
16900	_	OsFbox109, Os_F0628	_	F-box protein 109			2	LOC_Os02g51350. Os_F0628 in Hua et al. 2011.		Os02g0748300	LOC_Os02g51350.1						
16901	_	OsFbox110, Os_F0551	_	F-box protein 110			2	LOC_Os02g52130. Os_F0551 in Hua et al. 2011.		Os02g0757700	LOC_Os02g52130.9, LOC_Os02g52130.8, LOC_Os02g52130.7, LOC_Os02g52130.6, LOC_Os02g52130.5, LOC_Os02g52130.4, LOC_Os02g52130.3, LOC_Os02g52130.2, LOC_Os02g52130.1						
16902	_	OsFbox111, Os_F0005	_	F-box protein 111			2	LOC_Os02g54240. Os_F0005 in Hua et al. 2011.		Os02g0783600	LOC_Os02g54240.1						
16903	_	OsFbox112, Os_F0657	_	F-box protein 112			2	LOC_Os02g54330. Os_F0657 in Hua et al. 2011.			LOC_Os02g54330						
16904	_	OsFbox113, Os_F0234	_	F-box protein 113			2	LOC_Os02g54550. Os_F0234 in Hua et al. 2011.		Os02g0786600	LOC_Os02g54550.1						
16905	_	OsFbox114, Os_F0103	_	F-box protein 114			2	LOC_Os02g55050. Os_F0103 in Hua et al. 2011.		Os02g0793500	LOC_Os02g55050.2, LOC_Os02g55050.1						
16906	_	OsFbox115, Os_F0639	_	F-box protein 115			2	LOC_Os02g56750. Os_F0639 in Hua et al. 2011.		Os02g0812500	LOC_Os02g56750.1						
16907	_	OsFbox116, Os_F0291	_	F-box protein 116			2	LOC_Os02g56760. Os_F0291 in Hua et al. 2011.		Os02g0812600	LOC_Os02g56760.1						
16908	_	OsFbox117, Os_F0679	_	F-box protein 117			2	LOC_Os02g56770. Os_F0679 in Hua et al. 2011.		Os02g0812700	LOC_Os02g56800.1, LOC_Os02g56770.1						
16909	_	OsFbox118, Os_F0460	_	F-box protein 118			2	LOC_Os02g56810. Os_F0460 in Hua et al. 2011.		Os02g0813000/Os02g0813083							
16910	_	OsFbox119, Os_F0693	_	F-box protein 119			2	LOC_Os02g56820. Os_F0693 in Hua et al. 2011.		Os02g0813000/Os02g0813166							
16911	_	OsFbox120, Os_F0441	_	F-box protein 120			2	LOC_Os02g56840. Os_F0441 in Hua et al. 2011.		Os02g0813350	LOC_Os02g56840.1						
16912	_	OsFbox121, Os_F0352	_	F-box protein 121			2	LOC_Os02g57860. Os_F0352 in Hua et al. 2011.			LOC_Os02g57860						
16913	_	OsFbox122, Os_F0288	_	F-box protein 122			2	LOC_Os02g57890. Os_F0288 in Hua et al. 2011.		Os02g0825301	LOC_Os02g57890.1						
16914	_	OsFbox123, Os_F0289	_	F-box protein 123			2	LOC_Os02g57910. Os_F0289 in Hua et al. 2011.		Os02g0825500	LOC_Os02g57910.1						
16915	_	OsFbox124, Os_F0262	_	F-box protein 124			2	LOC_Os02g57940. Os_F0262 in Hua et al. 2011.		Os02g0825700	LOC_Os02g57940.1						
16916	_	OsFbox125, Os_F0403	_	F-box protein 125			2	LOC_Os02g58040. Os_F0403 in Hua et al. 2011.		Os02g0826675/Os02g0826700							
16917	_	OsFbox126, Os_F0788	_	F-box protein 126			3	LOC_Os03g02210. Os_F0788 in Hua et al. 2011.		Os03g0113200	LOC_Os03g02210.1						
16918	_	OsFbox127, Os_F0532	_	F-box protein 127			3	LOC_Os03g02550. Os_F0532 in Hua et al. 2011.		Os03g0116700	LOC_Os03g02550.1						
16919	_	OsFbox128, Os_F0506	_	F-box protein 128			3	LOC_Os03g04270. Os_F0506 in Hua et al. 2011.		Os03g0135400	LOC_Os03g04270.1						
16921	_	OsFbox129, Os_F0178	_	F-box protein 129			3	LOC_Os03g07160. Os_F0178 in Hua et al. 2011.		Os03g0167800	LOC_Os03g07160.1						
16922	_	OsFbox131, Os_F0292	_	F-box protein 131			3	LOC_Os03g10040. Os_F0292 in Hua et al. 2011.		Os03g0196500	LOC_Os03g10040.1				GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0019005 - SCF ubiquitin ligase complex, GO:0048831 - regulation of shoot development		
16923	_	OsFbox132, Os_F0228	_	F-box protein 132			3	LOC_Os03g10540. Os_F0228 in Hua et al. 2011.		Os03g0202500	LOC_Os03g10540.2, LOC_Os03g10540.1						
16924	_	OsFbox133, Os_F0449	_	F-box protein 133			3	LOC_Os03g11790. Os_F0449 in Hua et al. 2011.		Os03g0217200	LOC_Os03g11790.3, LOC_Os03g11790.2, LOC_Os03g11790.1						
16925	_	OsFbox134, Os_F0443	_	F-box protein 134			3	LOC_Os03g12190. Os_F0443 in Hua et al. 2011.		Os03g0222200	LOC_Os03g12190.1						
16926	_	OsFbox135, Os_F0341	_	F-box protein 135			3	LOC_Os03g12200. Os_F0341 in Hua et al. 2011.		Os03g0222300	LOC_Os03g12200.1						
16927	_	OsFbox136, Os_F0187	_	F-box protein 136			3	LOC_Os03g12940. Os_F0187 in Hua et al. 2011.		Os03g0232000	LOC_Os03g12940.3, LOC_Os03g12940.2, LOC_Os03g12940.1						
16928	_	OsFbox137, Os_F0544	_	F-box protein 137			3	LOC_Os03g20500. Os_F0544 in Hua et al. 2011.		Os03g0321300	LOC_Os03g20500.1						
16929	_	OsFbox138, Os_F0340	_	F-box protein 138			3	LOC_Os03g22750. Os_F0340 in Hua et al. 2011.		Os03g0350500	LOC_Os03g22750.1						
16930	_	OsFbox140, Os_F0065	_	F-box protein 140			3	LOC_Os03g24200. Os_F0065 in Hua et al. 2011.			LOC_Os03g24200						
16931	_	OsFbox141, Os_F0122	_	F-box protein 141			3	LOC_Os03g25080. Os_F0122 in Hua et al. 2011.		Os03g0366350	LOC_Os03g25090.1, LOC_Os03g25080.1						
16932	_	OsFbox142, Os_F0023	_	F-box protein 142			3	LOC_Os03g25190. Os_F0023 in Hua et al. 2011.		Os03g0367300	LOC_Os03g25190.1						
16933	_	OsFbox143, Os_F0129	_	F-box protein 143			3	LOC_Os03g25220. Os_F0129 in Hua et al. 2011.		Os03g0367400	LOC_Os03g25220.1						
16934	_	OsFbox144, Os_F0237	_	F-box protein 144			3	LOC_Os03g25240. Os_F0237 in Hua et al. 2011.		Os03g0367600	LOC_Os03g25240.1						
16935	_	OsFbox145, Os_F0026	_	F-box protein 145			3	LOC_Os03g25250. Os_F0026 in Hua et al. 2011.		Os03g0367700	LOC_Os03g25250.1						
16936	_	OsFbox146, Os_F0179	_	F-box protein 146			3	LOC_Os03g25640. Os_F0179 in Hua et al. 2011.		Os03g0372900	LOC_Os03g25640.1						
16937	_	OsFbox147, Os_F0266	_	F-box protein 147			3	LOC_Os03g25650. Os_F0266 in Hua et al. 2011.		Os03g0373066	LOC_Os03g25650.1						
16938	_	OsFbox148, Os_F0426	_	F-box protein 148			3	LOC_Os03g26840. Os_F0426 in Hua et al. 2011.		Os03g0385600	LOC_Os03g26840.1						
16939	_	OsFbox150, Os_F0123	_	F-box protein 150			3	LOC_Os03g28130. Os_F0123 in Hua et al. 2011.		Os03g0399400	LOC_Os03g28130.1						
16940	_	OsFbox151, Os_F0222	_	F-box protein 151			3	LOC_Os03g30160. Os_F0222 in Hua et al. 2011.		Os03g0415400	LOC_Os03g30160.1						
16941	_	OsFbox152, Os_F0251	_	F-box protein 152			3	LOC_Os03g30920. Os_F0251 in Hua et al. 2011.		Os03g0423000	LOC_Os03g30920.1						
16942	_	OsFbox153	_	F-box protein 153			3	LOC_Os03g36439. 		Os03g0562200	LOC_Os03g36439.1						
16943	_	OsFbox154, Os_F0130	_	F-box protein 154			3	LOC_Os03g40370. Os_F0130 in Hua et al. 2011.		Os03g0600800	LOC_Os03g40370.1						
16944	_	OsFbox155, Os_F0503	_	F-box protein 155			3	LOC_Os03g43060. Os_F0503 in Hua et al. 2011.		Os03g0629450	LOC_Os03g43060.1						
16945	_	OsFbox156, Os_F0603	_	F-box protein 156			3	LOC_Os03g43390. Os_F0603 in Hua et al. 2011. FBL17a homolog in Wang et al. 2013.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0633100/Os03g0633400						TO:0000350 - cms-hl type	
16946	_	OsFbox157, Os_F0188	_	F-box protein 157			3	LOC_Os03g43770. Os_F0188 in Hua et al. 2011.		Os03g0638900	LOC_Os03g43770.1						
16947	_	OsFbox158, Os_F0008	_	F-box protein 158			3	LOC_Os03g44920. Os_F0008 in Hua et al. 2011.		Os03g0652400	LOC_Os03g44920.1						
16948	_	OsFbox159, Os_F0006	_	F-box protein 159			3	LOC_Os03g44980. Os_F0006 in Hua et al. 2011.		Os03g0653100	LOC_Os03g44980.1						
16949	_	OsFbox160, Os_F0017	_	F-box protein 160			3	LOC_Os03g46120. Os_F0017 in Hua et al. 2011.			LOC_Os03g46120						
16950	_	OsFbox161, Os_F0076	_	F-box protein 161			3	LOC_Os03g46140. Os_F0076 in Hua et al. 2011.		Os03g0664300	LOC_Os03g46140.1						
16951	_	OsFbox162, Os_F0012	_	F-box protein 162			3	LOC_Os03g46500. Os_F0012 in Hua et al. 2011.			LOC_Os03g46500						
16952	_	OsFbox163, Os_F0009	_	F-box protein 163			3	LOC_Os03g46510. Os_F0009 in Hua et al. 2011.		Os03g0668000	LOC_Os03g46510.1						
16953	_	OsFbox164, Os_F0040	_	F-box protein 164			3	LOC_Os03g46530. Os_F0040 in Hua et al. 2011.		Os03g0668100	LOC_Os03g46530.1						
16954	_	OsFbox165, Os_F0229	_	F-box protein 165			3	LOC_Os03g46690. Os_F0229 in Hua et al. 2011.		Os03g0669700/Os03g0669900							
16955	_	OsFbox166, Os_F0438	_	F-box protein 166			3	LOC_Os03g46720. Os_F0438 in Hua et al. 2011.		Os03g0669700/Os03g0669900							
16956	_	OsFbox167, Os_F0244	_	F-box protein 167			3	LOC_Os03g47420. Os_F0244 in Hua et al. 2011.			LOC_Os03g47420						
16957	_	OsFbox168, Os_F0132	_	F-box protein 168			3	LOC_Os03g49250. Os_F0132 in Hua et al. 2011.		Os03g0699600	LOC_Os03g49250.1						
16958	_	OsFbox169, Os_F0378	_	F-box protein 169			3	LOC_Os03g50050. Os_F0378 in Hua et al. 2011.		Os03g0708200	LOC_Os03g50050.1						
16959	_	OsFbox170, Os_F0296	_	F-box protein 170			3	LOC_Os03g51090. Os_F0296 in Hua et al. 2011.		Os03g0720400	LOC_Os03g51090.1						
16960	_	OsFbox171, Os_F0153	_	F-box protein 171			3	LOC_Os03g51270. Os_F0153 in Hua et al. 2011.		Os03g0722800	LOC_Os03g51270.1						
16961	_	OsFbox172, Os_F0303	_	F-box protein 172			3	LOC_Os03g51760. Os_F0303 in Hua et al. 2011.		Os03g0727800	LOC_Os03g51760.1						
16962	_	OsFbox173, Os_F0094	_	F-box protein 173			3	LOC_Os03g56440. Os_F0094 in Hua et al. 2011.		Os03g0775800	LOC_Os03g56440.1						
16963	_	OsFbox174, Os_F0714	_	F-box protein 174			3	LOC_Os03g56450. Os_F0714 in Hua et al. 2011.		Os03g0775900	LOC_Os03g56450.1						
16964	_	OsFbox175, Os_F0633	_	F-box protein 175			3	LOC_Os03g56510. Os_F0633 in Hua et al. 2011.		Os03g0776500	LOC_Os03g56510.1						
16965	_	OsFbox176, Os_F0077	_	F-box protein 176			3	LOC_Os03g58764. Os_F0077 in Hua et al. 2011.		Os03g0802100/Os03g0802200							
16966	_	OsFbox177, Os_F0120	_	F-box protein 177			3	LOC_Os03g63850. Os_F0120 in Hua et al. 2011.		Os03g0855500	LOC_Os03g63850.1						
16967	_	OsFbox178, Os_F0705	_	F-box protein 178			3	LOC_Os03g64360. Os_F0705 in Hua et al. 2011. AF358762.		Os03g0861800	LOC_Os03g64360.3, LOC_Os03g64360.2, LOC_Os03g64360.1						
16968	_	OsFbox179, Os_F0161	_	F-box protein 179			4	LOC_Os04g02280. Os_F0161 in Hua et al. 2011.		Os04g0113000	LOC_Os04g02280.1						
16969	_	OsFbox180, Os_F0342	_	F-box protein 180			4	LOC_Os04g08460. Os_F0161 in Hua et al. 2011.			LOC_Os04g08460						
16970	_	OsFbox181, Os_F0655	_	F-box protein 181			4	LOC_Os04g08510. Os_F0655 in Hua et al. 2011.		Os04g0167600	LOC_Os04g08510.1						
16971	_	OsFbox182, Os_F0223, F-box118	_	F-box protein 182			4	LOC_Os04g11450. Os_F0223 in Hua et al. 2011. F-box118 in Kamolsukyeunyong et al. 2019.	 Tolerance and resistance - Insect resistance	Os04g0191800	LOC_Os04g11450.1				GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
16972	_	OsFbox183, Fbox183, Os_F0203, F-box119	_	F-box protein 183			4	LOC_Os04g11660. Os_F0203 in Hua et al. 2011. F-box119 in Kamolsukyeunyong et al. 2019.	 Tolerance and resistance - Insect resistance	Os04g0193300	LOC_Os04g11660.1, LOC_Os04g11660.2				GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
16973	_	OsFbox184, Os_F0197	_	F-box protein 184			4	LOC_Os04g11790. Os_F0197 in Hua et al. 2011.		Os04g0194000	LOC_Os04g11790.1						
16974	_	OsFbox185, Os_F0197	_	F-box protein 185			4	LOC_Os04g11890. Os_F0142 in Hua et al. 2011.		Os04g0195100	LOC_Os04g11890.1						
16975	_	OsFbox186, Os_F0322	_	F-box protein 186			4	LOC_Os04g12990. Os_F0322 in Hua et al. 2011.			LOC_Os04g12990						
16976	_	OsFbox187, Os_F0245	_	F-box protein 187			4	LOC_Os04g13010. Os_F0245 in Hua et al. 2011.		Os04g0207000	LOC_Os04g13010.1						
16977	_	OsFbox188, Os_F0182	_	F-box protein 188			4	LOC_Os04g13040. Os_F0182 in Hua et al. 2011.		Os04g0207100	LOC_Os04g13040.1						
16978	_	OsFbox189, Os_F0133	_	F-box protein 189			4	LOC_Os04g13150. Os_F0133 in Hua et al. 2011.		Os04g0208400	LOC_Os04g13150.1						
16979	_	OsFbox190, Os_F0204	_	F-box protein 190			4	LOC_Os04g13160. Os_F0204 in Hua et al. 2011.		Os04g0208500	LOC_Os04g13160.1						
16980	_	OsFbox191, Os_F0109	_	F-box protein 191			4	LOC_Os04g13170. Os_F0109 in Hua et al. 2011.		Os04g0208600	LOC_Os04g13170.1						
16981	_	OsFbox192, Os_F0688	_	F-box protein 192			4	LOC_Os04g18790. Os_F0688 in Hua et al. 2011.		Os04g0258900	LOC_Os04g18790.1						
16982	_	OsFbox193, Os_F0515	_	F-box protein 193			4	LOC_Os04g19750. Os_F0515 in Hua et al. 2011.			LOC_Os04g19750						
16983	_	OsFbox194, Os_F0635	_	F-box protein 194			4	LOC_Os04g19800. Os_F0635 in Hua et al. 2011.		Os04g0267600	LOC_Os04g19800.1						
16984	_	OsFbox195, Os_F0144	_	F-box protein 195			4	LOC_Os04g19810. Os_F0144 in Hua et al. 2011.		Os04g0267775	LOC_Os04g19810.1						
16985	_	OsFbox196, Os_F0324	_	F-box protein 196			4	LOC_Os04g19920. Os_F0324 in Hua et al. 2011.		Os04g0268600	LOC_Os04g19920.1						
16986	_	OsFbox197, Os_F0620	_	F-box protein 197			4	LOC_Os04g24820. Os_F0620 in Hua et al. 2011.		Os04g0313500	LOC_Os04g24820.1						
16987	_	OsFbox198, Os_F0644	_	F-box protein 198			4	LOC_Os04g25140. Os_F0644 in Hua et al. 2011.		Os04g0317300	LOC_Os04g25140.1						
16988	_	OsFbox199, Os_F0630	_	F-box protein 199			4	LOC_Os04g25840. Os_F0630 in Hua et al. 2011.		Os04g0324600	LOC_Os04g25840.1						
16989	_	OsFbox200, Os_F0645	_	F-box protein 200			4	LOC_Os04g26240. Os_F0645 in Hua et al. 2011.		Os04g0329500	LOC_Os04g26240.2, LOC_Os04g26240.1						
16990	_	OsFbox201, Os_F0552	_	F-box protein 201			4	LOC_Os04g30810. Os_F0552 in Hua et al. 2011.		Os04g0376800	LOC_Os04g30810.1						
16991	_	OsFbox202, Os_F0749	_	F-box protein 202			4	LOC_Os04g30830. Os_F0749 in Hua et al. 2011.			LOC_Os04g30830						
16992	_	OsFbox203, Os_F0600	_	F-box protein 203			4	LOC_Os04g31120. Os_F0600 in Hua et al. 2011.		Os04g0380300	LOC_Os04g31120.6, LOC_Os04g31120.5, LOC_Os04g31120.4, LOC_Os04g31120.3, LOC_Os04g31120.2, LOC_Os04g31120.1						
16993	_	OsFbox204, Os_F0139	_	F-box protein 204			4	LOC_Os04g31540. Os_F0139 in Hua et al. 2011.		Os04g0384500	LOC_Os04g31540.1						
16994	_	OsFbox205, Os_F0044	_	F-box protein 205			4	LOC_Os04g31580. Os_F0044 in Hua et al. 2011.		Os04g0385100	LOC_Os04g31580.1						
16995	_	OsFbox207, Os_F0611	_	F-box protein 207			4	LOC_Os04g33400. Os_F0611 in Hua et al. 2011.		Os04g0409100	LOC_Os04g33400.1						
16996	_	OsFbox208, Os_F0775	_	F-box protein 208			4	LOC_Os04g33820. Os_F0775 in Hua et al. 2011.		Os04g0414500	LOC_Os04g33820.1						
16997	_	OsFbox210	_	F-box protein 210			4	LOC_Os04g35930.		Os04g0440200	LOC_Os04g35930.1						
16998	_	OsFbox211, Os_F0331	_	F-box protein 211			4	LOC_Os04g35940. Os_F0331 in Hua et al. 2011.		Os04g0440300	LOC_Os04g35940.1						
16999	_	OsFbox212, Os_F0238	_	F-box protein 212			4	LOC_Os04g35970. Os_F0238 in Hua et al. 2011.		Os04g0440400	LOC_Os04g35970.1						
17000	_	OsFbox213, Os_F0422	_	F-box protein 213			4	LOC_Os04g35990. Os_F0422 in Hua et al. 2011.		Os04g0440700	LOC_Os04g35990.1						
17001	_	OsFbox214, Os_F0430	_	F-box protein 214			4	LOC_Os04g36000. Os_F0430 in Hua et al. 2011.		Os04g0440901	LOC_Os04g36000.1						
17002	_	OsFbox215, Os_F0110	_	F-box protein 215			4	LOC_Os04g36020. Os_F0110 in Hua et al. 2011.		Os04g0441400	LOC_Os04g36020.1						
17003	_	OsFbox216, Os_F0328	_	F-box protein 216			4	LOC_Os04g39070. Os_F0328 in Hua et al. 2011.		Os04g0464900	LOC_Os04g39070.1						
17004	_	OsFbox217, Os_F0121, MOF, OsMOF	_	F-box protein 217, MEIOTIC F-BOX		mof	4	LOC_Os04g39080. Os_F0121 in Hua et al. 2011.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0464966	LOC_Os04g39080.1				GO:0045141 - meiotic telomere clustering, GO:0019005 - SCF ubiquitin ligase complex, GO:0007140 - male meiosis, GO:0007129 - synapsis, GO:0000706 - meiotic DNA double-strand break processing, GO:0009555 - pollen development, GO:0007128 - meiotic prophase I	TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
17005	_	OsFbox218, Os_F0597	_	F-box protein 218			4	LOC_Os04g39660. Os_F0597 in Hua et al. 2011.		Os04g0472600	LOC_Os04g39660.1						
17006	_	OsFbox219, Os_F0485	_	F-box protein 219			4	LOC_Os04g40330. Os_F0485 in Hua et al. 2011.		Os04g0479500	LOC_Os04g40330.3, LOC_Os04g40330.2, LOC_Os04g40330.1						
17007	_	OsFbox220, Os_F0518	_	F-box protein 220			4	LOC_Os04g40370. Os_F0518 in Hua et al. 2011.		Os04g0479800	LOC_Os04g40370.3, LOC_Os04g40370.2, LOC_Os04g40370.1						
17008	_	OsFbox221, Os_F0036	_	F-box protein 221			4	LOC_Os04g40760. Os_F0036 in Hua et al. 2011.		Os04g0483800	LOC_Os04g40760.1						
17009	_	OsFbox222, Os_F0047	_	F-box protein 222			4	LOC_Os04g40770. Os_F0047 in Hua et al. 2011.		Os04g0483900/Os04g0483950							
17010	_	OsFbox223, Os_F0055	_	F-box protein 223			4	LOC_Os04g40780. Os_F0055 in Hua et al. 2011.		Os04g0484000/Os04g0484066							
17011	_	OsFbox224, Os_F0093	_	F-box protein 224			4	LOC_Os04g40800. Os_F0093 in Hua et al. 2011.			LOC_Os04g40800						
17012	_	OsFbox225, Os_F0540	_	F-box protein 225			4	LOC_Os04g40910. Os_F0540 in Hua et al. 2011.		Os04g0485800	LOC_Os04g40910.2, LOC_Os04g40910.1						
17013	_	OsFbox226, Os_F0022	_	F-box protein 226			4	LOC_Os04g40960. Os_F0022 in Hua et al. 2011.		Os04g0486700	LOC_Os04g40960.1						
17014	_	OsFbox227, Os_F0286	_	F-box protein 227			4	LOC_Os04g42670. Os_F0286 in Hua et al. 2011.		Os04g0505700	LOC_Os04g42670.1						
17015	_	OsFbox228, Os_F0553	_	F-box protein 228			4	LOC_Os04g48270. Os_F0553 in Hua et al. 2011.		Os04g0571300	LOC_Os04g48270.4, LOC_Os04g48270.3, LOC_Os04g48270.2, LOC_Os04g48270.1						
17016	_	OsFbox229, Os_F0493	_	F-box protein 229			4	LOC_Os04g49360. Os_F0493 in Hua et al. 2011.		Os04g0583000	LOC_Os04g49360.1						
17017	_	OsFbox230, Os_F0308	_	F-box protein 230			4	LOC_Os04g49950. Os_F0308 in Hua et al. 2011.		Os04g0589300/Os04g0589350							
17018	_	OsFbox231, Os_F0565	_	F-box protein 231			4	LOC_Os04g50200. Os_F0565 in Hua et al. 2011.		Os04g0591900	LOC_Os04g50200.1						
17019	_	OsFbox232, Os_F0576	_	F-box protein 232			4	LOC_Os04g52830. Os_F0576 in Hua et al. 2011.		Os04g0619300	LOC_Os04g52830.2, LOC_Os04g52830.1				GO:0005634 - nucleus		
17020	_	OsFbox234, Os_F0170	_	F-box protein 234			4	LOC_Os04g53510. Os_F0170 in Hua et al. 2011.		Os04g0626600	LOC_Os04g53510.1						
17021	_	OsFbox235, Os_F0248	_	F-box protein 235			4	LOC_Os04g56250. Os_F0248 in Hua et al. 2011.		Os04g0657600	LOC_Os04g56250.1						
17022	_	OsFbox236, Os_F0264	_	F-box protein 236			4	Q7XR80. LOC_Os04g57210. Os_F0264 in Hua et al. 2011.		Os04g0667700	LOC_Os04g57210.3, LOC_Os04g57210.2, LOC_Os04g57210.1				GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0005730 - nucleolus		
17023	_	OsFbox237, Os_F0241	_	F-box protein 237			4	 LOC_Os04g57290. Os_F0241 in Hua et al. 2011.		Os04g0668600	LOC_Os04g57290.1						
17024	_	OsFbox238, Os_F0385	_	F-box protein 238			4	 LOC_Os04g57920. Os_F0385 in Hua et al. 2011.		Os04g0675800	LOC_Os04g57920.1				GO:0010020 - chloroplast fission		
17025	_	OsFbox239, Os_F0304	_	F-box protein 239			4	LOC_Os04g59010. Os_F0304 in Hua et al. 2011.		Os04g0686700	LOC_Os04g59010.1						
17026	_	OsFbox241, Os_F0593	_	F-box protein 241			5	LOC_Os05g01620. Os_F0593 in Hua et al. 2011.		Os05g0106800	LOC_Os05g01620.1						
17027	_	OsFbox242, Os_F0706	_	F-box protein 242			5	LOC_Os05g01630. Os_F0706 in Hua et al. 2011.		Os05g0106900	LOC_Os05g01630.3, LOC_Os05g01630.2, LOC_Os05g01630.1						
17028	_	OsFbox243, Os_F0545	_	F-box protein 243			5	LOC_Os05g02550. Os_F0545 in Hua et al. 2011.		Os05g0116300	LOC_Os05g02550.1						
17029	_	OsFbox244, Os_F0497	_	F-box protein 244			5	LOC_Os05g03210. Os_F0497 in Hua et al. 2011.		Os05g0123400	LOC_Os05g03210.2, LOC_Os05g03210.1						
17030	_	OsFbox245, Os_F0037	_	F-box protein 245			5	LOC_Os05g04750. Os_F0037 in Hua et al. 2011.		Os05g0139200	LOC_Os05g04750.1						
17031	_	OsFbox246, Os_F0004	_	F-box protein 246			5	LOC_Os05g04770. Os_F0004 in Hua et al. 2011.		Os05g0139300	LOC_Os05g04770.1						
17032	_	OsFbox247, Os_F0660	_	F-box protein 247			5	LOC_Os05g05500. Os_F0660 in Hua et al. 2011.		Os05g0147700	LOC_Os05g05500.1						
17033	_	OsFbox249, Os_F0030	_	F-box protein 249			5	LOC_Os05g07950. Os_F0030 in Hua et al. 2011.		Os05g0172000	LOC_Os05g07950.1						
17034	_	OsFbox250, Os_F0011	_	F-box protein 250			5	LOC_Os05g08010. Os_F0011 in Hua et al. 2011.		Os05g0172500	LOC_Os05g08010.1						
17035	_	OsFbox251, Os_F0085	_	F-box protein 251			5	LOC_Os05g08350. Os_F0085 in Hua et al. 2011.		Os05g0175800	LOC_Os05g08350.1						
17036	_	OsFbox252, Os_F0066	_	F-box protein 252			5	LOC_Os05g08440. Os_F0066 in Hua et al. 2011.		Os05g0177000	LOC_Os05g08440.1						
17037	_	OsFbox253, Os_F0052	_	F-box protein 253			5	LOC_Os05g08460. Os_F0052 in Hua et al. 2011.		Os05g0177400	LOC_Os05g08460.1						
17038	_	OsFbox254, Os_F0290	_	F-box protein 254			5	LOC_Os05g18660. Os_F0290 in Hua et al. 2011.		Os05g0269100	LOC_Os05g18660.2, LOC_Os05g18660.1						
17039	_	OsFbox255, Os_F0067	_	F-box protein 255			5	LOC_Os05g25580. Os_F0067 in Hua et al. 2011.		Os05g0320100	LOC_Os05g25580.1						
17040	_	OsFbox256, Os_F0111	_	F-box protein 256			5	LOC_Os05g27550. Os_F0111 in Hua et al. 2011.			LOC_Os05g27550						
17041	_	OsFbox257, Os_F0400	_	F-box protein 257			5	LOC_Os05g30920. Os_F0400 in Hua et al. 2011.		Os05g0372800	LOC_Os05g30920.3, LOC_Os05g30920.2, LOC_Os05g30920.1						
17042	_	OsFbox258, Os_F0658	_	F-box protein 258			5	LOC_Os05g35110. Os_F0658 in Hua et al. 2011. GO:1901332: negative regulation of lateral root development.		Os05g0425700	LOC_Os05g35110.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0019005 - SCF ubiquitin ligase complex, GO:0051781 - positive regulation of cell division, GO:0010311 - lateral root formation, GO:0010286 - heat acclimation, GO:0071365 - cellular response to auxin stimulus, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process		
17043	_	OsFbox261, Os_F0604	_	F-box protein 261			5	LOC_Os05g39300. Os_F0604 in Hua et al. 2011.		Os05g0469300	LOC_Os05g39300.1						
17044	_	OsFbox262, Os_F0703	_	F-box protein 262			5	LOC_Os05g40500. Os_F0703 in Hua et al. 2011.			LOC_Os05g40500						
17045	_	OsFbox263, Os_F0721	_	F-box protein 263			5	LOC_Os05g40520. Os_F0721 in Hua et al. 2011.			LOC_Os05g40520						
17046	_	OsFbox264, Os_F0554	_	F-box protein 264			5	LOC_Os05g40610. Os_F0554 in Hua et al. 2011.			LOC_Os05g40610						
17047	_	OsFbox265, Os_F0584	_	F-box protein 265			5	LOC_Os05g41130. Os_F0584 in Hua et al. 2011.		Os05g0490300	LOC_Os05g41130.1						
17048	_	OsFbox266, Os_F0434	_	F-box protein 266			5	LOC_Os05g43490. Os_F0434 in Hua et al. 2011.		Os05g0510400	LOC_Os05g43490.2, LOC_Os05g43490.1						
17049	_	OsFbox268, Os_F0080	_	F-box protein 268			5	LOC_Os05g45040. Os_F0080 in Hua et al. 2011.		Os05g0526300	LOC_Os05g45040.1						
17050	_	OsFbox269, Os_F0444	_	F-box protein 269			5	LOC_Os05g45870. Os_F0444 in Hua et al. 2011.		Os05g0535200	LOC_Os05g45870.1						
17051	_	OsFbox270, Os_F0454	_	F-box protein 270			5	LOC_Os05g45990. Os_F0454 in Hua et al. 2011.		Os05g0536800	LOC_Os05g45990.1						
17052	_	OsFbox271, Os_F0666	_	F-box protein 271			5	LOC_Os05g46060. Os_F0666 in Hua et al. 2011.			LOC_Os05g46060						
17053	_	OsFbox272, Os_F0626	_	F-box protein 272			5	LOC_Os05g46150. Os_F0626 in Hua et al. 2011.			LOC_Os05g46150						
17054	_	OsFbox273, Os_F0573	_	F-box protein 273			5	LOC_Os05g46160. Os_F0573 in Hua et al. 2011.			LOC_Os05g46160						
17055	_	OsFbox274, Os_F0450	_	F-box protein 274			5	LOC_Os05g46300. Os_F0450 in Hua et al. 2011.		Os05g0540400	LOC_Os05g46300.1						
17056	_	OsFbox275, Os_F0483	_	F-box protein 275			5	LOC_Os05g46320. Os_F0483 in Hua et al. 2011.		Os05g0540600	LOC_Os05g46320.1						
17057	_	OsFbox276, Os_F0412	_	F-box protein 276			5	LOC_Os05g46380. Os_F0412 in Hua et al. 2011.		Os05g0541500	LOC_Os05g46380.1						
17058	_	OsFbox277, Os_F0150	_	F-box protein 277			5	LOC_Os05g46390. Os_F0150 in Hua et al. 2011.		Os05g0541600	LOC_Os05g46390.1						
17059	_	OsFbox279, Os_F0100	_	F-box protein 279			5	LOC_Os05g49400. Os_F0100 in Hua et al. 2011.		Os05g0569100	LOC_Os05g49400.1						
17060	_	OsFbox280, Os_F0260	_	F-box protein 280			5	LOC_Os05g49450. Os_F0260 in Hua et al. 2011.		Os05g0569600	LOC_Os05g49450.1						
17061	_	OsFbox281, Os_F0379	_	F-box protein 281			5	LOC_Os05g49530. Os_F0379 in Hua et al. 2011.		Os05g0570500	LOC_Os05g49530.1						
17062	_	OsFbox282, Os_F0643	_	F-box protein 282			5	LOC_Os05g49680. Os_F0643 in Hua et al. 2011.		Os05g0571700	LOC_Os05g49680.1						
17063	_	OsFbox283, Os_F0368	_	F-box protein 283			5	LOC_Os05g49980. Os_F0368 in Hua et al. 2011.		Os05g0575400	LOC_Os05g49980.2, LOC_Os05g49980.1						
17064	_	OsFbox284, Os_F0301	_	F-box protein 284			5	LOC_Os05g51100. Os_F0301 in Hua et al. 2011.		Os05g0588600	LOC_Os05g51100.1						
17065	_	OsFbox285, Os_F0166	_	F-box protein 285			6	LOC_Os06g02054. Os_F0166 in Hua et al. 2011.		Os06g0110400	LOC_Os06g02054.1						
17066	_	OsFbox286, Os_F0619	_	F-box protein 286			6	LOC_Os06g02100. Os_F0619 in Hua et al. 2011.		Os06g0111100	LOC_Os06g02100.1						
17067	_	OsFbox287, Os_F0750	_	F-box protein 287			6	LOC_Os06g02110. Os_F0750 in Hua et al. 2011.		Os06g0111200	LOC_Os06g02110.1						
17068	_	OsFbox288, Os_F0622	_	F-box protein 288			6	LOC_Os06g02340. Os_F0622 in Hua et al. 2011.		Os06g0113600	LOC_Os06g02340.1						
17069	_	OsFbox289, Os_F0510	_	F-box protein 289			6	LOC_Os06g02400. Os_F0510 in Hua et al. 2011.		Os06g0114300	LOC_Os06g02400.1						
17070	_	OsFbox290, Os_F0343	_	F-box protein 290			6	LOC_Os06g04690. Os_F0343 in Hua et al. 2011.		Os06g0138700	LOC_Os06g04690.1						
17071	_	OsFbox291, Os_F0516	_	F-box protein 291		ogorf7-1, ogorf7-2	6	LOC_Os06g04980. Os_F0516 in Hua et al. 2011. KY486274 (OsORF7 in Oryza sativa S1 locus, F-box domain protein), KY486273 (OgORF7 in Oryza glaberrima S1 locus, F-box domain protein). The mF1 plants with ogorf7-1 or ogorf7-2 showed the semi-sterile phenotype of pollen and spikelets, and the distorted genotypic segregation (Xie et al. 2017).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os06g0142100	LOC_Os06g04980.1					TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	
17072	_	OsFbox292, Os_F0618	_	F-box protein 292			6	LOC_Os06g05580. Os_F0618 in Hua et al. 2011.		Os06g0148600	LOC_Os06g05580.2, LOC_Os06g05580.1						
17073	_	OsFbox293, Os_F0585	_	F-box protein 293			6	LOC_Os06g05590. Os_F0585 in Hua et al. 2011.		Os06g0148700	LOC_Os06g05590.1						
17074	_	OsFbox294, Os_F0333	_	F-box protein 294			6	LOC_Os06g05600. Os_F0333 in Hua et al. 2011.			LOC_Os06g05600						
17075	_	OsFbox295, Os_F0299	_	F-box protein 295			6	LOC_Os06g05610. Os_F0299 in Hua et al. 2011.		Os06g0148900	LOC_Os06g05610.1						
17076	_	OsFbox296, Os_F0612	_	F-box protein 296			6	LOC_Os06g05620. Os_F0612 in Hua et al. 2011.			LOC_Os06g05620						
17077	_	OsFbox297, Os_F0442	_	F-box protein 297			6	LOC_Os06g06600. Os_F0442 in Hua et al. 2011.		Os06g0161300	LOC_Os06g06600.2, LOC_Os06g06600.1						
17078	_	OsFbox298, Os_F0486	_	F-box protein 298			6	LOC_Os06g07000. Os_F0486 in Hua et al. 2011.		Os06g0166000	LOC_Os06g07000.3, LOC_Os06g07000.2, LOC_Os06g07000.1						
17079	_	OsFbox299, Os_F0015	_	F-box protein 299			6	LOC_Os06g07380. Os_F0015 in Hua et al. 2011.		Os06g0170700	LOC_Os06g07380.1						
17080	_	OsFbox300, Os_F0003	_	F-box protein 300			6	LOC_Os06g07430. Os_F0003 in Hua et al. 2011.			LOC_Os06g07430						
17081	_	OsFbox301, Os_F0013	_	F-box protein 301			6	LOC_Os06g07460. Os_F0013 in Hua et al. 2011.		Os06g0171400	LOC_Os06g07460.1						
17082	_	OsFbox302, Os_F0143	_	F-box protein 302			6	LOC_Os06g10290. Os_F0143 in Hua et al. 2011.		Os06g0204500/Os06g0204600							
17083	_	OsFbox303, Os_F0405	_	F-box protein 303			6	LOC_Os06g10300. Os_F0405 in Hua et al. 2011.		Os06g0204600	LOC_Os06g10300.1, LOC_Os06g10290.1						
17084	_	OsFbox305, Os_F0041	_	F-box protein 305			6	LOC_Os06g13850. Os_F0041 in Hua et al. 2011.		Os06g0248300	LOC_Os06g13850.1						
17085	_	OsFbox306, Os_F0305	_	F-box protein 306			6	LOC_Os06g13960. Os_F0305 in Hua et al. 2011.		Os06g0249850	LOC_Os06g13960.1						
17086	_	OsFbox307, Os_F0034	_	F-box protein 307			6	LOC_Os06g13990. Os_F0034 in Hua et al. 2011.		Os06g0250000	LOC_Os06g13990.1						
17087	_	OsFbox308, Os_F0081	_	F-box protein 308			6	LOC_Os06g19670. Os_F0081 in Hua et al. 2011.		Os06g0300900	LOC_Os06g19670.1						
17088	_	OsFbox309, Os_F0312	_	F-box protein 309			6	LOC_Os06g29700. Os_F0312 in Hua et al. 2011.		Os06g0492800	LOC_Os06g29700.1						
17089	_	OsFbox310, Os_F0057	_	F-box protein 310			6	LOC_Os06g29710. Os_F0057 in Hua et al. 2011.		Os06g0492900	LOC_Os06g29710.1						
17090	_	OsFbox311, Os_F0115	_	F-box protein 311			6	LOC_Os06g29740. Os_F0115 in Hua et al. 2011.		Os06g0493266	LOC_Os06g29740.1						
17091	_	OsFbox312, Os_F0546	_	F-box protein 312			6	LOC_Os06g35080. Os_F0546 in Hua et al. 2011.		Os06g0542600	LOC_Os06g35080.1						
17092	_	OsFbox313, Os_F0104	_	F-box protein 313			6	LOC_Os06g36220. Os_F0104 in Hua et al. 2011.		Os06g0556300	LOC_Os06g36220.1						
17093	_	OsFbox315, Os_F0369	_	F-box protein 315			6	LOC_Os06g40220. Os_F0369 in Hua et al. 2011.			LOC_Os06g40220						
17094	_	OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1	_	F-box protein 316, EIN3-BINDING F-BOX PROTEIN 1			6	LOC_Os06g40360. Os_F0624 in Hua et al. 2011.		Os06g0605900	LOC_Os06g40360.2, LOC_Os06g40360.1				GO:0019005 - SCF ubiquitin ligase complex, GO:0009723 - response to ethylene stimulus		
17095	_	OsFbox317, Os_F0038	_	F-box protein 317			6	LOC_Os06g41520. Os_F0038 in Hua et al. 2011.			LOC_Os06g41520						
17096	_	OsFbox318, Os_F0416	_	F-box protein 318			6	LOC_Os06g43740. Os_F0416 in Hua et al. 2011.		Os06g0645100	LOC_Os06g43740.1						
17097	_	OsFbox319, Os_F0429	_	F-box protein 319			6	LOC_Os06g44500. Os_F0429 in Hua et al. 2011.		Os06g0655500	LOC_Os06g44500.1						
17098	_	OsFbox320, Os_F0613	_	F-box protein 320			6	LOC_Os06g44920. Os_F0613 in Hua et al. 2011.		Os06g0659700	LOC_Os06g44920.1						
17099	_	OsFbox322, Os_F0520	_	F-box protein 322			6	LOC_Os06g47100. Os_F0520 in Hua et al. 2011.		Os06g0684900	LOC_Os06g47100.1						
17100	_	OsFbox323, Os_F0105	_	F-box protein 323			6	LOC_Os06g47400. Os_F0105 in Hua et al. 2011.		Os06g0688400	LOC_Os06g47400.1						
17101	_	OsFbox324, Os_F0220	_	F-box protein 324			6	LOC_Os06g47680. Os_F0220 in Hua et al. 2011.		Os06g0691900	LOC_Os06g47680.1						
17102	_	OsFbox326, Os_F0327	_	F-box protein 326			6	LOC_Os06g49340. Os_F0327 in Hua et al. 2011.		Os06g0707300	LOC_Os06g49340.1						
17103	_	OsFbox327, Os_F0126	_	F-box protein 327			6	LOC_Os06g49530. Os_F0126 in Hua et al. 2011.		Os06g0709100	LOC_Os06g49530.1						
17104	_	OsFbox328, Os_F0254	_	F-box protein 328			6	LOC_Os06g49930. Os_F0254 in Hua et al. 2011.		Os06g0713400	LOC_Os06g49930.3, LOC_Os06g49930.2, LOC_Os06g49930.1						
17105	_	OsFbox329, Os_F0529	_	F-box protein 329			7	LOC_Os07g02290. Os_F0529 in Hua et al. 2011.		Os07g0113600	LOC_Os07g02290.1						
17106	_	OsFbox330, Os_F0521	_	F-box protein 330			7	LOC_Os07g02760. Os_F0521 in Hua et al. 2011.		Os07g0118800	LOC_Os07g02760.3, LOC_Os07g02760.2, LOC_Os07g02760.1						
17107	_	OsFbox331, Os_F0273	_	F-box protein 331			7	LOC_Os07g02770. Os_F0273 in Hua et al. 2011.		Os07g0118900	LOC_Os07g02770.1						
17108	_	OsFbox332, Os_F0267	_	F-box protein 332			7	LOC_Os07g02890. Os_F0267 in Hua et al. 2011.		Os07g0120200	LOC_Os07g02890.1						
17109	_	OsFbox333, Os_F0159	_	F-box protein 333			7	LOC_Os07g02910. Os_F0159 in Hua et al. 2011.		Os07g0120400	LOC_Os07g02910.1						
17110	_	OsFbox334, Os_F0361	_	F-box protein 334			7	LOC_Os07g02930. Os_F0361 in Hua et al. 2011.			LOC_Os07g02930						
17111	_	OsFbox335, Os_F0487	_	F-box protein 335			7	LOC_Os07g03090. Os_F0487 in Hua et al. 2011.		Os07g0122800	LOC_Os07g03090.1						
17112	_	OsFbox336, Os_F0293	_	F-box protein 336			7	LOC_Os07g03100. Os_F0293 in Hua et al. 2011.		Os07g0122900	LOC_Os07g03100.3, LOC_Os07g03100.2, LOC_Os07g03100.1						
17113	_	OsFbox337, Os_F0302	_	F-box protein 337			7	LOC_Os07g03100. Os_F0293 in Hua et al. 2011.		Os07g0123000	LOC_Os07g03110.1						
17114	_	OsFbox338, Os_F0537	_	F-box protein 338			7	LOC_Os07g04750. Os_F0537 in Hua et al. 2011.		Os07g0140500	LOC_Os07g04750.1						
17115	_	OsFbox339, Os_F0636	_	F-box protein 339			7	LOC_Os07g04790. Os_F0636 in Hua et al. 2011.		Os07g0140900	LOC_Os07g04790.1						
17116	_	OsFbox340, Os_F0124	_	F-box protein 340			7	LOC_Os07g05880. Os_F0124 in Hua et al. 2011.		Os07g0153400	LOC_Os07g05880.2, LOC_Os07g05880.1						
17117	_	OsFbox341, Fbox341, Os_F0215	_	F-box protein 341			7	LOC_Os07g06500. Os_F0215 in Hua et al. 2011.		Os07g0158900	LOC_Os07g06500.1						
17118	_	OsFbox342, Os_F0418	_	F-box protein 342			7	LOC_Os07g06670. Os_F0418 in Hua et al. 2011.		Os07g0160500	LOC_Os07g06670.1						
17119	_	OsFbox343, Os_F0141	_	F-box protein 343			7	LOC_Os07g06730. Os_F0141 in Hua et al. 2011.		Os07g0161500	LOC_Os07g06730.1						
17120	_	OsFbox344, Os_F0183	_	F-box protein 344			7	LOC_Os07g06900. Os_F0183 in Hua et al. 2011.		Os07g0163200	LOC_Os07g06900.1						
17121	_	OsFbox345, Os_F0495	_	F-box protein 345			7	LOC_Os07g07520. Os_F0495 in Hua et al. 2011.		Os07g0170800	LOC_Os07g07520.1						
17122	_	OsFbox346, Os_F0078	_	F-box protein 346			7	LOC_Os07g08570. Os_F0078 in Hua et al. 2011.			LOC_Os07g08570						
17123	_	OsFbox347, Os_F0072	_	F-box protein 347			7	LOC_Os07g09710. Os_F0072 in Hua et al. 2011.		Os07g0195300	LOC_Os07g09710.1						
17124	_	OsFbox348, Os_F0035	_	F-box protein 348			7	LOC_Os07g09814. Os_F0035 in Hua et al. 2011.		Os07g0196300	LOC_Os07g09814.3, LOC_Os07g09814.2, LOC_Os07g09814.1						
17125	_	OsFbox349, Os_F0252	_	F-box protein 349			7	LOC_Os07g09870. Os_F0252 in Hua et al. 2011.		Os07g0196900	LOC_Os07g09870.1						
17126	_	OsFbox350, Os_F0212	_	F-box protein 350			7	LOC_Os07g09950. Os_F0212 in Hua et al. 2011.		Os07g0198000	LOC_Os07g09950.1						
17127	_	OsFbox351, Os_F0298	_	F-box protein 351			7	LOC_Os07g10710. Os_F0298 in Hua et al. 2011.		Os07g0207900	LOC_Os07g10710.1						
17128	_	OsFbox352, Os_F0525	_	F-box protein 352			7	LOC_Os07g12560. Os_F0525 in Hua et al. 2011.		Os07g0228400	LOC_Os07g12560.2, LOC_Os07g12560.1						
17129	_	OsFbox353, Os_F0501	_	F-box protein 353			7	LOC_Os07g12590. Os_F0501 in Hua et al. 2011.		Os07g0228900	LOC_Os07g12590.2, LOC_Os07g12590.1						
17130	_	OsFbox354, Os_F0275	_	F-box protein 354			7	LOC_Os07g12600. Os_F0275 in Hua et al. 2011.		Os07g0229100	LOC_Os07g12600.1						
17131	_	OsFbox355, Os_F0349	_	F-box protein 355			7	LOC_Os07g12610. Os_F0349 in Hua et al. 2011.		Os07g0229200	LOC_Os07g12610.1						
17132	_	OsFbox356, Os_F0118	_	F-box protein 356			7	LOC_Os07g13870. Os_F0118 in Hua et al. 2011.		Os07g0242400	LOC_Os07g13870.1						
17133	_	OsFbox357, Os_F0033	_	F-box protein 357			7	LOC_Os07g13890. Os_F0033 in Hua et al. 2011.		Os07g0242600	LOC_Os07g13890.1						
17134	_	OsFbox358, Os_F0098	_	F-box protein 358			7	LOC_Os07g13900. Os_F0098 in Hua et al. 2011.		Os07g0242700	LOC_Os07g13900.1						
17135	_	OsFbox359, Os_F0431	_	F-box protein 359			7	LOC_Os07g13930. Os_F0431 in Hua et al. 2011.		Os07g0242900	LOC_Os07g13930.1						
17136	_	OsFbox360, Os_F0235	_	F-box protein 360			7	LOC_Os07g16420. Os_F0235 in Hua et al. 2011.		Os07g0268000	LOC_Os07g16420.1						
17137	_	OsFbox361, Os_F0171	_	F-box protein 361			7	LOC_Os07g16800. Os_F0171 in Hua et al. 2011.		Os07g0269800	LOC_Os07g16800.1				GO:0003824 - catalytic activity		
17138	_	OsFbox362, Os_F0439	_	F-box protein 362			7	LOC_Os07g17460. Os_F0439 in Hua et al. 2011.		Os07g0276000	LOC_Os07g17460.1				GO:0003824 - catalytic activity		
17139	_	OsFbox363, Os_F0353	_	F-box protein 363			7	LOC_Os07g18510. Os_F0353 in Hua et al. 2011.		Os07g0285200	LOC_Os07g18510.1				GO:0003824 - catalytic activity		
17140	_	OsFbox364, Os_F0107	_	F-box protein 364			7	LOC_Os07g18560. Os_F0107 in Hua et al. 2011.		Os07g0285700	LOC_Os07g18560.1				GO:0003824 - catalytic activity		
17141	_	OsFbox365, Os_F0205	_	F-box protein 365			7	LOC_Os07g18600. Os_F0205 in Hua et al. 2011.		Os07g0285900	LOC_Os07g18600.1, LOC_Os07g18580.1				GO:0003824 - catalytic activity		
17142	_	OsFbox366, Os_F0784	_	F-box protein 366			7	LOC_Os07g18610. Os_F0784 in Hua et al. 2011.		Os07g0286300	LOC_Os07g18610.1				GO:0003824 - catalytic activity		
17143	_	OsFbox367, Os_F0432	_	F-box protein 367			7	LOC_Os07g18710. Os_F0432 in Hua et al. 2011.		Os07g0287000	LOC_Os07g18710.1				GO:0003824 - catalytic activity		
17144	_	OsFbox368, Os_F0425	_	F-box protein 368			7	LOC_Os07g23890. Os_F0425 in Hua et al. 2011.		Os07g0420900	LOC_Os07g23890.1				GO:0003824 - catalytic activity		
17145	_	OsFbox370, Os_F0625	_	F-box protein 370			7	LOC_Os07g25800. Os_F0625 in Hua et al. 2011.		Os07g0440000	LOC_Os07g25800.1				GO:0003824 - catalytic activity		
17146	_	OsFbox371, Os_F0357	_	F-box protein 371			7	LOC_Os07g26000. Os_F0357 in Hua et al. 2011.		Os07g0442000	LOC_Os07g26000.1				GO:0003824 - catalytic activity		
17147	_	OsFbox372, Os_F0371	_	F-box protein 372			7	LOC_Os07g27030. Os_F0371 in Hua et al. 2011.			LOC_Os07g27030				GO:0003824 - catalytic activity		
17148	_	OsFbox373, Os_F0163	_	F-box protein 373			7	LOC_Os07g31680. Os_F0163 in Hua et al. 2011.		Os07g0499900	LOC_Os07g31680.1				GO:0003824 - catalytic activity		
17149	_	OsFbox374, Os_F0598	_	F-box protein 374			7	LOC_Os07g33400 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0598 in Hua et al. 2011.							GO:0003824 - catalytic activity		
17150	_	OsFbox375, Os_F0062	_	F-box protein 375			7	LOC_Os07g35050. Os_F0062 in Hua et al. 2011.		Os07g0535100	LOC_Os07g35050.1				GO:0003824 - catalytic activity		
17151	_	OsFbox376, Os_F0063	_	F-box protein 376			7	LOC_Os07g35060. Os_F0063 in Hua et al. 2011.		Os07g0535200	LOC_Os07g35060.2, LOC_Os07g35060.1				GO:0003824 - catalytic activity		
17152	_	OsFbox377, Os_F0465	_	F-box protein 377			7	LOC_Os07g35070. Os_F0465 in Hua et al. 2011.			LOC_Os07g35070				GO:0003824 - catalytic activity		
17153	_	OsFbox378, Os_F0217	_	F-box protein 378			7	LOC_Os07g36280. Os_F0217 in Hua et al. 2011.		Os07g0546800	LOC_Os07g36280.1				GO:0003824 - catalytic activity		
17154	_	OsFbox379, Os_F0261	_	F-box protein 379			7	LOC_Os07g36290. Os_F0261 in Hua et al. 2011.		Os07g0547100	LOC_Os07g36290.1				GO:0003824 - catalytic activity		
17155	_	OsFbox380, Os_F0423	_	F-box protein 380			7	LOC_Os07g36300. Os_F0423 in Hua et al. 2011.		Os07g0547200	LOC_Os07g36300.1				GO:0003824 - catalytic activity		
17156	_	OsFbox381, Os_F0656	_	F-box protein 381			7	LOC_Os07g36320. Os_F0656 in Hua et al. 2011.			LOC_Os07g36320						
17157	_	OsFbox382, Os_F0731	_	F-box protein 382			7	LOC_Os07g36330. Os_F0731 in Hua et al. 2011.		Os07g0547600	LOC_Os07g36330.1						
17158	_	OsFbox383, Os_F0702	_	F-box protein 383			7	LOC_Os07g36340. Os_F0702 in Hua et al. 2011.		Os07g0547700	LOC_Os07g36340.1						
17159	_	OsFbox384, Os_F0579	_	F-box protein 384			7	LOC_Os07g36370. Os_F0579 in Hua et al. 2011.		Os07g0548100	LOC_Os07g36370.1						
17160	_	OsFbox385, Os_F0148	_	F-box protein 385			7	LOC_Os07g36520. Os_F0148 in Hua et al. 2011.		Os07g0550300	LOC_Os07g36520.1						
17161	_	OsFbox386, Os_F0523	_	F-box protein 386			7	LOC_Os07g36530. Os_F0523 in Hua et al. 2011.		Os07g0550432	LOC_Os07g36530.1						
17162	_	OsFbox387, Os_F0534	_	F-box protein 387			7	LOC_Os07g36830. Os_F0534 in Hua et al. 2011.		Os07g0554100	LOC_Os07g36830.1						
17163	_	OsFbox388, Os_F0605	_	F-box protein 388			7	LOC_Os07g36840. Os_F0605 in Hua et al. 2011.		Os07g0554200	LOC_Os07g36840.1						
17164	_	OsFbox389, Os_F0673	_	F-box protein 389			7	LOC_Os07g36870. Os_F0673 in Hua et al. 2011.		Os07g0554500	LOC_Os07g36870.1						
17165	_	OsFbox390, Os_F0759	_	F-box protein 390			7	LOC_Os07g36880. Os_F0759 in Hua et al. 2011.		Os07g0554600	LOC_Os07g36880.1						
17166	_	OsFbox391, Os_F0082	_	F-box protein 391			7	LOC_Os07g36890. Os_F0082 in Hua et al. 2011.		Os07g0554700	LOC_Os07g36890.1						
17167	_	OsFbox392, Os_F0313	_	F-box protein 392			7	LOC_Os07g36900. Os_F0313 in Hua et al. 2011.		Os07g0554800	LOC_Os07g36900.1						
17168	_	OsFbox393, Os_F0462	_	F-box protein 393			7	LOC_Os07g36910. Os_F0462 in Hua et al. 2011.		Os07g0554900	LOC_Os07g36910.2, LOC_Os07g36910.1						
17169	_	OsFbox394, Os_F0722	_	F-box protein 394			7	LOC_Os07g36920. Os_F0722 in Hua et al. 2011.		Os07g0555000	LOC_Os07g36920.1						
17170	_	OsFbox395, Os_F0032	_	F-box protein 395			7	LOC_Os07g37080. Os_F0032 in Hua et al. 2011.			LOC_Os07g37080						
17171	_	OsFbox396, Os_F0578, OsMsr9	_	F-box protein 396			7	LOC_Os07g37400. Os_F0578 in Hua et al. 2011.	 Tolerance and resistance - Stress tolerance	Os07g0561300	LOC_Os07g37400.1				GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
17172	_	OsFbox397, Os_F0108	_	F-box protein 397			7	LOC_Os07g42590. Os_F0108 in Hua et al. 2011.		Os07g0617700	LOC_Os07g42590.1						
17173	_	OsFbox399, Os_F0281	_	F-box protein 399			7	LOC_Os07g47160. Os_F0281 in Hua et al. 2011.		Os07g0667500/Os07g0667601							
17174	_	OsFbox400, Os_F0541	_	F-box protein 400			7	LOC_Os07g47650. Os_F0541 in Hua et al. 2011.		Os07g0673700	LOC_Os07g47650.1				GO:0016301 - kinase activity		
17175	_	OsFbox401, Os_F0042	_	F-box protein 401			7	LOC_Os07g48940. Os_F0042 in Hua et al. 2011.		Os07g0689000	LOC_Os07g48940.1						
17176	_	OsFbox403, Os_F0338	_	F-box protein 403			8	LOC_Os08g01430. Os_F0338 in Hua et al. 2011.		Os08g0105100	LOC_Os08g01430.1						
17177	_	OsFbox404, Os_F0566	_	F-box protein 404			8	LOC_Os08g03300. Os_F0566 in Hua et al. 2011.		Os08g0126500	LOC_Os08g03300.1						
17178	_	OsFbox405, Os_F0623	_	F-box protein 405			8	LOC_Os08g03320. Os_F0623 in Hua et al. 2011.		Os08g0126800	LOC_Os08g03320.1						
17179	_	OsFbox406, Os_F0075	_	F-box protein 406			8	LOC_Os08g05460. Os_F0075 in Hua et al. 2011.		Os08g0150500	LOC_Os08g05460.1						
17180	_	OsFbox407, Os_F0406	_	F-box protein 407			8	LOC_Os08g05480. Os_F0406 in Hua et al. 2011.		Os08g0150700	LOC_Os08g05480.1						
17181	_	OsFbox408, Os_F0490	_	F-box protein 408			8	LOC_Os08g09220. Os_F0490 in Hua et al. 2011.		Os08g0191300	LOC_Os08g09220.1						
17182	_	OsFbox409, Os_F0265	_	F-box protein 409			8	LOC_Os08g09380. Os_F0265 in Hua et al. 2011.		Os08g0193200	LOC_Os08g09380.1						
17183	_	OsFbox410, Os_F0192	_	F-box protein 410			8	LOC_Os08g09390. Os_F0192 in Hua et al. 2011.		Os08g0193300	LOC_Os08g09390.1						
17184	_	OsFbox411, Os_F0280	_	F-box protein 411			8	LOC_Os08g09410. Os_F0280 in Hua et al. 2011.		Os08g0193500	LOC_Os08g09410.1						
17185	_	OsFbox412, Fbox412, Os_F0356	_	F-box protein 412			8	LOC_Os08g09420. Os_F0356 in Hua et al. 2011.		Os08g0193600	LOC_Os08g09420.1						
17186	_	OsFbox413, Os_F0321	_	F-box protein 413			8	LOC_Os08g09450. Os_F0321 in Hua et al. 2011.		Os08g0193900	LOC_Os08g09450.1						
17187	_	OsFbox414, Os_F0654	_	F-box protein 414			8	LOC_Os08g09460. Os_F0654 in Hua et al. 2011.		Os08g0194000	LOC_Os08g09460.1						
17188	_	OsFbox415, Os_F0498	_	F-box protein 415			8	LOC_Os08g09480. Os_F0498 in Hua et al. 2011.			LOC_Os08g09480						
17189	_	OsFbox416, Os_F0464	_	F-box protein 416			8	LOC_Os08g09590. Os_F0464 in Hua et al. 2011.		Os08g0195000	LOC_Os08g09590.1						
17190	_	OsFbox417, Os_F0682	_	F-box protein 417			8	LOC_Os08g09640. Os_F0682 in Hua et al. 2011.		Os08g0195800	LOC_Os08g09640.1						
17191	_	OsFbox418, Os_F0453	_	F-box protein 418			8	LOC_Os08g09650. Os_F0453 in Hua et al. 2011.		Os08g0195900	LOC_Os08g09650.1						
17192	_	OsFbox420, Os_F0206	_	F-box protein 420			8	LOC_Os08g09710. Os_F0206 in Hua et al. 2011.		Os08g0197000	LOC_Os08g09710.1						
17193	_	OsFbox421, Os_F0249	_	F-box protein 421			8	LOC_Os08g09720. Os_F0249 in Hua et al. 2011.		Os08g0197100	LOC_Os08g09720.1						
17194	_	OsFbox422, Os_F0246	_	F-box protein 422			8	LOC_Os08g09730. Os_F0246 in Hua et al. 2011.		Os08g0197200	LOC_Os08g09730.1						
17195	_	OsFbox423, Os_F0386	_	F-box protein 423			8	LOC_Os08g09740. Os_F0386 in Hua et al. 2011.		Os08g0197300	LOC_Os08g09740.1						
17196	_	OsFbox424, Os_F0348	_	F-box protein 424			8	LOC_Os08g09750. Os_F0348 in Hua et al. 2011.		Os08g0197400	LOC_Os08g09750.1						
17197	_	OsFbox425, Os_F0168	_	F-box protein 425			8	LOC_Os08g09760. Os_F0168 in Hua et al. 2011.		Os08g0197500	LOC_Os08g09760.2, LOC_Os08g09760.1						
17198	_	OsFbox426, Os_F0184	_	F-box protein 426			8	LOC_Os08g09910. Os_F0184 in Hua et al. 2011.		Os08g0199000	LOC_Os08g09910.1						
17199	_	OsFbox427, Os_F0221	_	F-box protein 427			8	LOC_Os08g09920. Os_F0221 in Hua et al. 2011.		Os08g0199100	LOC_Os08g09920.2, LOC_Os08g09920.1						
17200	_	OsFbox428, Os_F0440	_	F-box protein 428			8	LOC_Os08g10340. Os_F0440 in Hua et al. 2011.		Os08g0203800	LOC_Os08g10340.1						
17201	_	OsFbox429, Os_F0367	_	F-box protein 429			8	LOC_Os08g16630. Os_F0367 in Hua et al. 2011.			LOC_Os08g16630						
17202	_	OsFbox430, Os_F0456	_	F-box protein 430			8	LOC_Os08g16670. Os_F0456 in Hua et al. 2011.		Os08g0267000	LOC_Os08g16670.1						
17203	_	OsFbox431, Os_F0614	_	F-box protein 431			8	LOC_Os08g16710. Os_F0614 in Hua et al. 2011.		Os08g0267800	LOC_Os08g16710.1						
17204	_	OsFbox432, Os_F0694	_	F-box protein 432			8	LOC_Os08g16840. Os_F0694 in Hua et al. 2011.		Os08g0269800	LOC_Os08g16840.1						
17205	_	OsFbox433, Os_F0239	_	F-box protein 433			8	LOC_Os08g16860. Os_F0239 in Hua et al. 2011.		Os08g0270000	LOC_Os08g16860.1						
17206	_	OsFbox435, Os_F0317	_	F-box protein 435			8	LOC_Os08g20480. Os_F0317 in Hua et al. 2011.		Os08g0299700	LOC_Os08g20480.1						
17207	_	OsFbox436, Os_F0146	_	F-box protein 436			8	LOC_Os08g20492. Os_F0146 in Hua et al. 2011.			LOC_Os08g20492						
17208	_	OsFbox437, Os_F0277	_	F-box protein 437			8	LOC_Os08g23960. Os_F0277 in Hua et al. 2011.		Os08g0328600	LOC_Os08g23960.1						
17209	_	OsFbox438, Os_F0427	_	F-box protein 438			8	LOC_Os08g24140. Os_F0427 in Hua et al. 2011.		Os08g0330200	LOC_Os08g24140.1						
17210	_	OsFbox439, Os_F0320	_	F-box protein 439			8	LOC_Os08g24370. Os_F0320 in Hua et al. 2011.			LOC_Os08g24370						
17211	_	OsFbox440, Os_F0542	_	F-box protein 440			8	LOC_Os08g24830. Os_F0542 in Hua et al. 2011.		Os08g0336000	LOC_Os08g24830.1						
17212	_	OsFbox441, Os_F0010	_	F-box protein 441			8	LOC_Os08g27190. Os_F0010 in Hua et al. 2011.		Os08g0360400	LOC_Os08g27190.1						
17213	_	OsFbox443, Os_F0084, OsSTA212	_	F-box protein 443			8	LOC_Os08g29400. Os_F00840 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0382800/Os08g0383250							PO:0009066 - anther 
17214	_	OsFbox444, Os_F0648	_	F-box protein 444			8	LOC_Os08g31690. Os_F0648 in Hua et al. 2011.		Os08g0410266	LOC_Os08g31690.1						
17215	_	OsFbox445, Os_F0550	_	F-box protein 445			8	LOC_Os08g33140. Os_F0550 in Hua et al. 2011.		Os08g0428100	LOC_Os08g33140.1						
17216	_	OsFbox446, Os_F0095	_	F-box protein 446			8	LOC_Os08g34820. Os_F0095 in Hua et al. 2011.		Os08g0448300	LOC_Os08g34820.1						
17217	_	OsFbox447, Os_F0225	_	F-box protein 447			8	LOC_Os08g34860. Os_F0225 in Hua et al. 2011.		Os08g0449100	LOC_Os08g34860.1						
17218	_	OsFbox448, Os_F0428	_	F-box protein 448			8	LOC_Os08g34890. Os_F0428 in Hua et al. 2011.		Os08g0449700	LOC_Os08g34890.1						
17219	_	OsFbox449, Os_F0345	_	F-box protein 449			8	LOC_Os08g35870. Os_F0345 in Hua et al. 2011.		Os08g0460800	LOC_Os08g35870.2, LOC_Os08g35870.1						
17220	_	OsFbox450, Os_F0185	_	F-box protein 450			8	LOC_Os08g35880. Os_F0185 in Hua et al. 2011.		Os08g0460900	LOC_Os08g35880.1						
17221	_	OsFbox451, Os_F0189	_	F-box protein 451			8	LOC_Os08g35900. Os_F0189 in Hua et al. 2011.		Os08g0461000	LOC_Os08g35900.2, LOC_Os08g35900.1						
17222	_	OsFbox452, Os_F0193	_	F-box protein 452			8	LOC_Os08g35930. Os_F0193 in Hua et al. 2011.		Os08g0461300	LOC_Os08g35930.2, LOC_Os08g35930.1						
17223	_	OsFbox453, Os_F0339	_	F-box protein 453			8	LOC_Os08g35960. Os_F0339 in Hua et al. 2011.		Os08g0461800	LOC_Os08g35960.3, LOC_Os08g35960.2, LOC_Os08g35960.1						
17224	_	OsFbox454, Os_F0207	_	F-box protein 454			8	LOC_Os08g36000. Os_F0207 in Hua et al. 2011.		Os08g0462200	LOC_Os08g36000.1						
17225	_	OsFbox455, Os_F0173	_	F-box protein 455			8	LOC_Os08g36010. Os_F0173 in Hua et al. 2011.		Os08g0462300	LOC_Os08g36010.1						
17226	_	OsFbox456, Fbox456, Os_F0543	_	F-box protein 456			8	LOC_Os08g36960. Os_F0543 in Hua et al. 2011.	 Biochemical character,  Reproductive organ	Os08g0474400	LOC_Os08g36960.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process		PO:0000084 - plant sperm cell 
17227	_	OsFbox457, Os_F0575	_	F-box protein 457			8	LOC_Os08g38330. Os_F0575 in Hua et al. 2011.		Os08g0491300	LOC_Os08g38330.1						
17228	_	OsFbox458, Os_F0530	_	F-box protein 458			8	LOC_Os08g38360. Os_F0530 in Hua et al. 2011.		Os08g0491600	LOC_Os08g38360.1						
17229	_	OsFbox459, Os_F0074	_	F-box protein 459			8	LOC_Os08g38470. Os_F0074 in Hua et al. 2011.		Os08g0492900	LOC_Os08g38470.1						
17230	_	OsFbox460, Os_F0200	_	F-box protein 460			8	LOC_Os08g38480. Os_F0200 in Hua et al. 2011.		Os08g0493100	LOC_Os08g38480.1						
17231	_	OsFbox461, Os_F0025	_	F-box protein 461			8	LOC_Os08g38490. Os_F0025 in Hua et al. 2011.		Os08g0493200	LOC_Os08g38490.1						
17232	_	OsFbox462, Os_F0019	_	F-box protein 462			8	LOC_Os08g38520. Os_F0019 in Hua et al. 2011.		Os08g0493450	LOC_Os08g38520.1						
17233	_	OsFbox463, Os_F0230	_	F-box protein 463			8	LOC_Os08g41750. Os_F0230 in Hua et al. 2011.		Os08g0529300	LOC_Os08g41750.1						
17234	_	OsFbox464, Os_F0048	_	F-box protein 464			8	LOC_Os08g41760. Os_F0048 in Hua et al. 2011.		Os08g0529400	LOC_Os08g41760.1						
17235	_	OsFbox465, Os_F0016	_	F-box protein 465			8	LOC_Os08g43220. Os_F0016 in Hua et al. 2011.			LOC_Os08g43220						
17236	_	OsFbox466, Os_F0587	_	F-box protein 466			8	LOC_Os08g43530. Os_F0587 in Hua et al. 2011.		Os08g0548800	LOC_Os08g43530.1						
17237	_	OsFbox467, Os_F0397	_	F-box protein 467			9	LOC_Os09g06620. Os_F0397 in Hua et al. 2011.		Os09g0241550	LOC_Os09g06620.1						
17238	_	OsFbox468, Os_F0398	_	F-box protein 468			9	LOC_Os09g08550. Os_F0398 in Hua et al. 2011.		Os09g0260000	LOC_Os09g08550.1						
17239	_	OsFbox469, Os_F0272	_	F-box protein 469			9	LOC_Os09g08620. Os_F0272 in Hua et al. 2011.		Os09g0261100	LOC_Os09g08620.1						
17240	_	OsFbox470, Os_F0504	_	F-box protein 470			9	LOC_Os09g15440. Os_F0504 in Hua et al. 2011.		Os09g0323200	LOC_Os09g15440.1						
17241	_	OsFbox471, Os_F0538	_	F-box protein 471			9	LOC_Os09g15540. Os_F0538 in Hua et al. 2011.		Os09g0324200	LOC_Os09g15540.1						
17242	_	OsFbox472, Os_F0599	_	F-box protein 472			9	LOC_Os09g15550. Os_F0599 in Hua et al. 2011.		Os09g0324300	LOC_Os09g15550.1						
17243	_	OsFbox473, Os_F0455	_	F-box protein 473			9	LOC_Os09g15560. Os_F0455 in Hua et al. 2011.		Os09g0324400	LOC_Os09g15560.1						
17244	_	OsFbox474, Os_F0632	_	F-box protein 474			9	LOC_Os09g15570. Os_F0632 in Hua et al. 2011.		Os09g0324701	LOC_Os09g15570.1						
17245	_	OsFbox475, Os_F0634	_	F-box protein 475			9	LOC_Os09g15590. Os_F0634 in Hua et al. 2011.		Os09g0325220	LOC_Os09g15590.1						
17246	_	OsFbox476, Os_F0457	_	F-box protein 476			9	LOC_Os09g16810. Os_F0457 in Hua et al. 2011.		Os09g0337800	LOC_Os09g16810.1						
17247	_	OsFbox477, Os_F0147	_	F-box protein 477			9	LOC_Os09g17080. Os_F0147 in Hua et al. 2011.		Os09g0340800	LOC_Os09g17080.1						
17248	_	OsFbox478, Os_F0354	_	F-box protein 478			9	LOC_Os09g17152. Os_F0354 in Hua et al. 2011.		Os09g0341600	LOC_Os09g17152.1						
17249	_	OsFbox479, Os_F0399	_	F-box protein 479			9	LOC_Os09g17190. Os_F0399 in Hua et al. 2011.		Os09g0342000	LOC_Os09g17190.1						
17250	_	OsFbox480, Os_F0388	_	F-box protein 480			9	LOC_Os09g17530. Os_F0388 in Hua et al. 2011.			LOC_Os09g17530						
17251	_	OsFbox481, Os_F0362, FBX322	_	F-box protein 481, F-box protein 322			9	LOC_Os09g17540. Os_F0362 in Hua et al. 2011. FBX322 in Hwang et al. 2014. 	 Tolerance and resistance - Stress tolerance	Os09g0344400	LOC_Os09g17540.1				GO:0009314 - response to radiation	TO:0000161 - radiation response trait	
17252	_	OsFbox482, Os_F0167	_	F-box protein 482			9	LOC_Os09g20650. Os_F0167 in Hua et al. 2011.		Os09g0372900	LOC_Os09g20650.2, LOC_Os09g20650.1						
17253	_	OsFbox483, Os_F0233	_	F-box protein 483			9	LOC_Os09g21580. Os_F0233 in Hua et al. 2011.		Os09g0384100	LOC_Os09g21580.1						
17254	_	OsFbox484, Os_F0373	_	F-box protein 484			9	LOC_Os09g21620. Os_F0373 in Hua et al. 2011.		Os09g0384300	LOC_Os09g21620.1						
17255	_	OsFbox485, Os_F0149	_	F-box protein 485			9	LOC_Os09g21700. Os_F0149 in Hua et al. 2011.		Os09g0385600	LOC_Os09g21700.1						
17256	_	OsFbox486, Os_F0355	_	F-box protein 486			9	LOC_Os09g22460. Os_F0355 in Hua et al. 2011.		Os09g0392200	LOC_Os09g22460.1						
17257	_	OsFbox487, Os_F0548	_	F-box protein 487			9	LOC_Os09g27090. Os_F0548 in Hua et al. 2011.		Os09g0443000	LOC_Os09g27090.1						
17258	_	OsFbox488, Os_F0562	_	F-box protein 488			9	LOC_Os09g27100. Os_F0562 in Hua et al. 2011.		Os09g0443100	LOC_Os09g27100.1						
17259	_	OsFbox489, Os_F0053	_	F-box protein 489			9	LOC_Os09g27570. Os_F0053 in Hua et al. 2011.		Os09g0448100	LOC_Os09g27570.1						
17260	_	OsFbox490, Os_F0091	_	F-box protein 490			9	LOC_Os09g27660. Os_F0091 in Hua et al. 2011.		Os09g0449600	LOC_Os09g27660.9, LOC_Os09g27660.8, LOC_Os09g27660.7, LOC_Os09g27660.6, LOC_Os09g27660.5, LOC_Os09g27660.4, LOC_Os09g27660.3, LOC_Os09g27660.2, LOC_Os09g27660.10, LOC_Os09g27660.1				GO:0008152 - metabolic process		
17261	_	OsFbox491, Os_F0580	_	F-box protein 491			9	LOC_Os09g28120. Os_F0580 in Hua et al. 2011.		Os09g0454300	LOC_Os09g28120.1				GO:0009506 - plasmodesma		
17262	_	OsFbox492, Os_F0175	_	F-box protein 492			9	LOC_Os09g30180. Os_F0175 in Hua et al. 2011.		Os09g0479100	LOC_Os09g30180.4, LOC_Os09g30180.3, LOC_Os09g30180.2, LOC_Os09g30180.1						
17263	_	OsFbox493, Os_F0049	_	F-box protein 493			9	LOC_Os09g32240. Os_F0049 in Hua et al. 2011.		Os09g0497600	LOC_Os09g32240.2, LOC_Os09g32240.1						
17264	_	OsFbox494, Os_F0637	_	F-box protein 494			9	LOC_Os09g32410. Os_F0637 in Hua et al. 2011.		Os09g0500100	LOC_Os09g32410.1						
17265	_	OsFbox495, Os_F0522	_	F-box protein 495			9	LOC_Os09g32600. Os_F0522 in Hua et al. 2011.		Os09g0502800	LOC_Os09g32600.1						
17266	_	OsFbox496, Os_F0287	_	F-box protein 496			9	LOC_Os09g32860. Os_F0287 in Hua et al. 2011.			LOC_Os09g32860						
17267	_	OsFbox497, Os_F0433	_	F-box protein 497			9	LOC_Os09g32870. Os_F0433 in Hua et al. 2011.		Os09g0506450	LOC_Os09g32870.1						
17268	_	OsFbox498, Os_F0145	_	F-box protein 498			9	LOC_Os09g32910. Os_F0145 in Hua et al. 2011.		Os09g0506700	LOC_Os09g32910.1						
17269	_	OsFbox499, Os_F0020	_	F-box protein 499			9	LOC_Os09g34200. Os_F0020 in Hua et al. 2011.		Os09g0517800	LOC_Os09g34200.1						
17270	_	OsFbox500, Os_F0186	_	F-box protein 500			9	LOC_Os09g35680. Os_F0186 in Hua et al. 2011.		Os09g0525300	LOC_Os09g35680.1						
17271	_	OsFbox501, Os_F0050	_	F-box protein 501			9	LOC_Os09g37570. Os_F0050 in Hua et al. 2011.		Os09g0547800	LOC_Os09g37570.1						
17272	_	OsFbox502, Os_F0060	_	F-box protein 502			9	LOC_Os09g37590. Os_F0060 in Hua et al. 2011.		Os09g0548034/Os09g0548066/Os09g0548100							
17273	_	OsFbox503, Os_F0101	_	F-box protein 503			9	LOC_Os09g38300. Os_F0101 in Hua et al. 2011.		Os09g0555300	LOC_Os09g38300.1						
17274	_	OsFbox504, Os_F0474	_	F-box protein 504			9	LOC_Os09g39000. Os_F0474 in Hua et al. 2011.		Os09g0563500	LOC_Os09g39000.1						
17275	_	OsFbox505, Os_F0638	_	F-box protein 505			9	LOC_Os09g39050. Os_F0638 in Hua et al. 2011.		Os09g0563950	LOC_Os09g39050.1						
17276	_	OsFbox506, Os_F0596	_	F-box protein 506			9	LOC_Os09g39190. Os_F0596 in Hua et al. 2011.		Os09g0565350	LOC_Os09g39190.2, LOC_Os09g39190.1						
17277	_	OsFbox507, Os_F0071	_	F-box protein 507			10	LOC_Os10g03600. Os_F0071 in Hua et al. 2011.		Os10g0124500	LOC_Os10g03600.2, LOC_Os10g03600.1						
17278	_	OsFbox508, Os_F0127	_	F-box protein 508			10	LOC_Os10g03620. Os_F0127 in Hua et al. 2011.		Os10g0124700	LOC_Os10g03620.2, LOC_Os10g03620.1						
17279	_	OsFbox509, Os_F0258, OsADF, ADF	_	F-box protein 509, anther development F-box			10	LOC_Os10g03660. Os_F0258 in Hua et al. 2011.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0125300/Os10g0125400					GO:0048657 - tapetal cell differentiation, GO:0009555 - pollen development, GO:0048653 - anther development	TO:0000531 - anther length, TO:0000214 - anther shape, TO:0000187 - anther color, TO:0000421 - pollen fertility	
17280	_	OsFbox510, Os_F0210	_	F-box protein 510			10	LOC_Os10g03690. Os_F0210 in Hua et al. 2011.		Os10g0126000	LOC_Os10g03690.1						
17281	_	OsFbox511, Os_F0112	_	F-box protein 511			10	LOC_Os10g03730. Os_F0112 in Hua et al. 2011.		Os10g0126500	LOC_Os10g03730.1						
17282	_	OsFbox512, Os_F0102	_	F-box protein 512			10	LOC_Os10g03740. Os_F0102 in Hua et al. 2011.		Os10g0126600	LOC_Os10g03740.2, LOC_Os10g03740.1						
17283	_	OsFbox513, Os_F0131	_	F-box protein 513			10	LOC_Os10g03750. Os_F0131 in Hua et al. 2011.		Os10g0126700	LOC_Os10g03750.1						
17284	_	OsFbox514, Os_F0140	_	F-box protein 514			10	LOC_Os10g03760. Os_F0140 in Hua et al. 2011.		Os10g0126800	LOC_Os10g03760.1						
17285	_	OsFbox515, Os_F0086	_	F-box protein 515			10	LOC_Os10g03780. Os_F0086 in Hua et al. 2011.		Os10g0126900	LOC_Os10g03780.1						
17286	_	OsFbox517, Os_F0054	_	F-box protein 517			10	LOC_Os10g03870. Os_F0054 in Hua et al. 2011.		Os10g0128200	LOC_Os10g03870.1						
17287	_	OsFbox518, Os_F0218	_	F-box protein 518			10	LOC_Os10g03910. Os_F0218 in Hua et al. 2011.		Os10g0128600	LOC_Os10g03910.1						
17288	_	OsFbox519	_	F-box protein 519			10	LOC_Os10g03930. 		Os10g0129100	LOC_Os10g03930.1						
17289	_	OsFbox520, Os_F0588	_	F-box protein 520			10	LOC_Os10g04020. Os_F0588 in Hua et al. 2011.		Os10g0130200	LOC_Os10g04020.1						
17290	_	OsFbox521, Os_F0526	_	F-box protein 521			10	LOC_Os10g04370. Os_F0526 in Hua et al. 2011.		Os10g0133100	LOC_Os10g04370.2, LOC_Os10g04370.1						
17291	_	OsFbox522, Os_F0408	_	F-box protein 522			10	LOC_Os10g04590. Os_F0408 in Hua et al. 2011.		Os10g0135300	LOC_Os10g04590.1						
17292	_	OsFbox523, Os_F0629	_	F-box protein 523			10	LOC_Os10g04600. Os_F0629 in Hua et al. 2011.		Os10g0135400	LOC_Os10g04600.3, LOC_Os10g04600.2, LOC_Os10g04600.1						
17293	_	OsFbox524, Os_F0561	_	F-box protein 524			10	LOC_Os10g04610. Os_F0561 in Hua et al. 2011.		Os10g0135500	LOC_Os10g04610.2, LOC_Os10g04610.1						
17294	_	OsFbox525, Os_F0176	_	F-box protein 525			10	LOC_Os10g04700. Os_F0176 in Hua et al. 2011.		Os10g0136200	LOC_Os10g04700.2, LOC_Os10g04700.1						
17295	_	OsFbox526, Os_F0056	_	F-box protein 526			10	LOC_Os10g04750. Os_F0056 in Hua et al. 2011.		Os10g0136750	LOC_Os10g04750.1						
17296	_	OsFbox527, Os_F0059	_	F-box protein 527			10	LOC_Os10g04780. Os_F0059 in Hua et al. 2011.		Os10g0137000	LOC_Os10g04780.1						
17297	_	OsFbox528, Os_F0224	_	F-box protein 528			10	LOC_Os10g04850. Os_F0224 in Hua et al. 2011.		Os10g0138000	LOC_Os10g04850.1				GO:0003677 - DNA binding		
17298	_	OsFbox529, Os_F0667, OsEnS-132	_	F-box protein 529, endosperm-specific gene 132			10	LOC_Os10g04900. Os_F0667 in Hua et al. 2011.		Os10g0138600	LOC_Os10g04900.2, LOC_Os10g04900.1						
17299	_	OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2	_	F-box protein 530, Paternally Expressed Gene 2		fbx365	10	LOC_Os10g04980. Os_F0198 in Hua et al. 2011. OsFBX365 in Yuan et al. 2017.	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os10g0139300	LOC_Os10g04980.1					TO:0000266 - chalky endosperm, TO:0000382 - 1000-seed weight, TO:0000104 - floury endosperm	PO:0009089 - endosperm 
17300	_	OsFbox531, Os_F0024	_	F-box protein 531			10	LOC_Os10g05200. Os_F0024 in Hua et al. 2011.		Os10g0141600	LOC_Os10g05200.1						
17301	_	OsFbox532, Os_F0058	_	F-box protein 532			10	LOC_Os10g05210. Os_F0058 in Hua et al. 2011.		Os10g0141700	LOC_Os10g05210.3, LOC_Os10g05210.2, LOC_Os10g05210.1						
17302	_	OsFbox533, Os_F0350	_	F-box protein 533			10	LOC_Os10g05240. Os_F0350 in Hua et al. 2011.		Os10g0142500	LOC_Os10g05240.1						
17303	_	OsFbox534, Os_F0527	_	F-box protein 534			10	LOC_Os10g05500. Os_F0527 in Hua et al. 2011.		Os10g0144800	LOC_Os10g05500.1						
17304	_	OsFbox535, Os_F0208	_	F-box protein 535			10	LOC_Os10g05520. Os_F0208 in Hua et al. 2011.		Os10g0145000	LOC_Os10g05520.1						
17305	_	OsFbox536, Os_F0201	_	F-box protein 536			10	LOC_Os10g05530. Os_F0201 in Hua et al. 2011.		Os10g0145100	LOC_Os10g05530.3, LOC_Os10g05530.2, LOC_Os10g05530.1						
17306	_	OsFbox537, Os_F0165	_	F-box protein 537			10	LOC_Os10g05540. Os_F0165 in Hua et al. 2011.		Os10g0145200	LOC_Os10g05540.1						
17307	_	OsFbox538, Os_F0470	_	F-box protein 538			10	LOC_Os10g05590. Os_F0470 in Hua et al. 2011.			LOC_Os10g05590						
17308	_	OsFbox539, Os_F0316	_	F-box protein 539			10	LOC_Os10g06700. Os_F0316 in Hua et al. 2011.		Os10g0155300	LOC_Os10g06700.1						
17309	_	OsFbox540, Os_F0468	_	F-box protein 540			10	LOC_Os10g10390. Os_F0468 in Hua et al. 2011.		Os10g0183300	LOC_Os10g10390.1						
17310	_	OsFbox541, Os_F0409	_	F-box protein 541			10	LOC_Os10g10410. Os_F0409 in Hua et al. 2011.		Os10g0183700	LOC_Os10g10410.1						
17311	_	OsFbox542, Os_F0480, OsSTA237	_	F-box protein 542			10	LOC_Os10g10420. Os_F0480 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0183800	LOC_Os10g10420.1						PO:0009066 - anther 
17312	_	OsFbox543, Os_F0162	_	F-box protein 543			10	LOC_Os10g10980. Os_F0162 in Hua et al. 2011.		Os10g0188000	LOC_Os10g10980.1						
17313	_	OsFbox544, Os_F0652	_	F-box protein 544			10	LOC_Os10g12200. Os_F0652 in Hua et al. 2011.		Os10g0197800	LOC_Os10g12200.1						
17314	_	OsFbox545, Os_F0535	_	F-box protein 545			10	LOC_Os10g17930. Os_F0535 in Hua et al. 2011.		Os10g0326400	LOC_Os10g17930.1						
17315	_	OsFbox546, Os_F0513	_	F-box protein 546			10	LOC_Os10g17940. Os_F0513 in Hua et al. 2011.		Os10g0326800	LOC_Os10g17940.1						
17316	_	OsFbox547, Os_F0119	_	F-box protein 547			10	LOC_Os10g21930. Os_F0119 in Hua et al. 2011.		Os10g0363600	LOC_Os10g21930.2, LOC_Os10g21930.1						
17317	_	OsFbox548, Os_F0160	_	F-box protein 548			10	LOC_Os10g24010. Os_F0160 in Hua et al. 2011.		Os10g0381700	LOC_Os10g24010.1						
17318	_	OsFbox549, Os_F0255	_	F-box protein 549			10	LOC_Os10g24900. Os_F0255 in Hua et al. 2011.		Os10g0388200	LOC_Os10g24900.1						
17319	_	OsFbox550, Os_F0263	_	F-box protein 550			10	LOC_Os10g25210. Os_F0263 in Hua et al. 2011.		Os10g0391200	LOC_Os10g25210.2, LOC_Os10g25210.1						
17320	_	OsFbox551, Os_F0073	_	F-box protein 551			10	LOC_Os10g25660. Os_F0073 in Hua et al. 2011.		Os10g0396100	LOC_Os10g25660.1						
17321	_	OsFbox552, Os_F0216	_	F-box protein 552			10	LOC_Os10g25680. Os_F0216 in Hua et al. 2011.		Os10g0396400/Os10g0396666							
17322	_	OsFbox553, Os_F0250	_	F-box protein 553			10	LOC_Os10g26990. Os_F0250 in Hua et al. 2011. AY886238-AY886269 and DQ374994-DQ375021  (O. sativa and other wild rice species, partial cds).		Os10g0409900	LOC_Os10g26990.1						
17323	_	OsFbox554, Os_F0677	_	F-box protein 554			10	LOC_Os10g30280. Os_F0677 in Hua et al. 2011.		Os10g0438500	LOC_Os10g30280.1						
17324	_	OsFbox555, Os_F0152	_	F-box protein 555			10	LOC_Os10g34300. Os_F0152 in Hua et al. 2011.		Os10g0484100	LOC_Os10g34300.1						
17325	_	OsFbox556, Os_F0154	_	F-box protein 556			10	LOC_Os10g34340. Os_F0154 in Hua et al. 2011.		Os10g0484632	LOC_Os10g34340.1						
17326	_	OsFbox557, Fbox557, Os_F0256	_	F-box protein 557			10	LOC_Os10g35920. Os_F0256 in Hua et al. 2011.	 Seed - Morphological traits - Grain shape	Os10g0502900	LOC_Os10g35920.1					TO:0002730 - grain shape	
17327	_	OsFbox558, Os_F0376	_	F-box protein 558			10	LOC_Os10g36310. Os_F0376 in Hua et al. 2011.		Os10g0507300	LOC_Os10g36310.1						
17328	_	OsFbox559, Os_F0572	_	F-box protein 559			10	LOC_Os10g37570. Os_F0572 in Hua et al. 2011.		Os10g0520100	LOC_Os10g37570.1						
17329	_	OsFbox560, Os_F0582	_	F-box protein 560			10	LOC_Os10g37830. Os_F0582 in Hua et al. 2011.		Os10g0522400	LOC_Os10g37830.2, LOC_Os10g37830.1				GO:0009611 - response to wounding		
17330	_	OsFbox561, Os_F0014	_	F-box protein 561			10	LOC_Os10g41650. Os_F0014 in Hua et al. 2011.		Os10g0566300	LOC_Os10g41650.1				GO:0009611 - response to wounding		
17331	_	OsFbox562, Os_F0002	_	F-box protein 562			11	LOC_Os10g41829. Os_F0002 in Hua et al. 2011.			LOC_Os10g41829						
17332	_	OsFbox563, Os_F0773	_	F-box protein 563			11	LOC_Os11g01780. Os_F0773 in Hua et al. 2011.		Os11g0108932	LOC_Os11g01780.1						
17333	_	OsFbox564, Os_F0113	_	F-box protein 564			11	LOC_Os11g03610. Os_F0113 in Hua et al. 2011.		Os11g0130500	LOC_Os11g03610.1						
17334	_	OsFbox565, Os_F0027	_	F-box protein 565			11	LOC_Os11g03680. Os_F0027 in Hua et al. 2011.		Os11g0131300	LOC_Os11g03680.1						
17335	_	OsFbox566, Os_F0279	_	F-box protein 566			11	LOC_Os11g04330. Os_F0279 in Hua et al. 2011.		Os11g0138700	LOC_Os11g04330.1						
17336	_	OsFbox567, Os_F0713	_	F-box protein 567			11	LOC_Os11g05580. Os_F0713 in Hua et al. 2011.		Os11g0154100	LOC_Os11g05580.1						
17337	_	OsFbox568, Os_F0335	_	F-box protein 568			11	LOC_Os11g05660. Os_F0335 in Hua et al. 2011.		Os11g0155100	LOC_Os11g05660.1						
17338	_	OsFbox570, Os_F0219	_	F-box protein 570			11	LOC_Os11g06580. Os_F0219 in Hua et al. 2011.		Os11g0166100	LOC_Os11g06580.1						
17339	_	OsFbox572, Os_F0135	_	F-box protein 572			11	LOC_Os11g09360. Os_F0135 in Hua et al. 2011.		Os11g0199900	LOC_Os11g09360.1						
17340	_	OsFbox573	_	F-box protein 573			11	LOC_Os11g09430 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17341	_	OsFbox574	_	F-box protein 574			11	LOC_Os11g09480 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17342	_	OsFbox575	_	F-box protein 575			11	LOC_Os11g09490 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17343	_	OsFbox576	_	F-box protein 576			11	LOC_Os11g09500 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17344	_	OsFbox577, Os_F0135	_	F-box protein 577			11	LOC_Os11g09510. Os_F0531 in Hua et al. 2011.			LOC_Os11g09510						
17345	_	OsFbox578, Os_F0136	_	F-box protein 578			11	LOC_Os11g09580. Os_F0136 in Hua et al. 2011.		Os11g0201480	LOC_Os11g09580.1						
17346	_	OsFbox579, Os_F0334	_	F-box protein 579			11	LOC_Os11g09590. Os_F0334 in Hua et al. 2011.			LOC_Os11g09590						
17347	_	OsFbox580, Os_F0096	_	F-box protein 580			11	LOC_Os11g09600. Os_F0096 in Hua et al. 2011.		Os11g0201600	LOC_Os11g09600.1						
17348	_	OsFbox581, Os_F0649	_	F-box protein 581			11	LOC_Os11g09620 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0649 in Hua et al. 2011.									
17349	_	OsFbox582, Os_F0511	_	F-box protein 582			11	LOC_Os11g09630. Os_F0511 in Hua et al. 2011.		Os11g0201900	LOC_Os11g09630.1						
17350	_	OsFbox583, Os_F0363	_	F-box protein 583			11	LOC_Os11g09640. Os_F0363 in Hua et al. 2011.		Os11g0202000	LOC_Os11g09640.2, LOC_Os11g09640.1						
17351	_	OsFbox584, Os_F0231	_	F-box protein 584			11	LOC_Os11g09670. Os_F0231 in Hua et al. 2011.		Os11g0202200	LOC_Os11g09670.2, LOC_Os11g09670.1						
17352	_	OsFbox585, Os_F0294	_	F-box protein 585			11	LOC_Os11g09690. Os_F0294 in Hua et al. 2011.		Os11g0202400	LOC_Os11g09690.1						
17353	_	OsFbox586, Os_F0088, Fbox-13	_	F-box protein 586, F-box family-13			11	LOC_Os11g09970. Os_F0088 in Hua et al. 2011. J11-13: japonica in Ammiraju et al. 2008. 		Os11g0205900	LOC_Os11g09970.1						
17354	_	OsFbox587, Os_F0097	_	F-box protein 587			11	LOC_Os11g10180. Os_F0097 in Hua et al. 2011.		Os11g0208000	LOC_Os11g10180.1						
17355	_	OsFbox588, Os_F0365, Fbox-10	_	F-box protein 588, F-box family-10			11	LOC_Os11g10200. Os_F0365 in Hua et al. 2011. Fbox-10 (J11-10: japonica) in Ammiraju et al. 2008. 		Os11g0208100	LOC_Os11g10200.1						
17356	_	OsFbox589, Os_F0137, Fbox-8	_	F-box protein 589, F-box family-8			11	LOC_Os11g10240. Os_F0137 in Hua et al. 2011. Fbox-8 (J11-8: japonica) in Ammiraju et al. 2008. 		Os11g0208400	LOC_Os11g10240.2, LOC_Os11g10240.1						
17357	_	OsFbox590, Os_F0068, Fbox-6	_	F-box protein 590, F-box family-6			11	LOC_Os11g10300. Os_F0068 in Hua et al. 2011. Fbox-6 (J11-6: japonica) in Ammiraju et al. 2008. 			LOC_Os11g10300						
17358	_	OsFbox593, Os_F0278, Fbox-3	_	F-box protein 593, F-box family-3			11	LOC_Os11g10370. Os_F0278 in Hua et al. 2011. Fbox-3 (J11-3: japonica) in Ammiraju et al. 2008. 		Os11g0209400	LOC_Os11g10370.1						
17359	_	OsFbox595, Os_F0194	_	F-box protein 595			11	LOC_Os11g12480. Os_F0194 in Hua et al. 2011.		Os11g0231600	LOC_Os11g12480.1						
17360	_	OsFbox597, Os_F0447	_	F-box protein 597			11	LOC_Os11g15620. Os_F0447 in Hua et al. 2011.		Os11g0262500	LOC_Os11g15620.1						
17361	_	OsFbox598, Os_F0672	_	F-box protein 598			11	LOC_Os11g16280. Os_F0672 in Hua et al. 2011.		Os11g0264200	LOC_Os11g16280.1						
17362	_	OsFbox599	_	F-box protein 599			11	LOC_Os11g16330.		Os11g0264700	LOC_Os11g16330.4, LOC_Os11g16330.3, LOC_Os11g16330.2, LOC_Os11g16330.1						
17363	_	OsFbox600, Os_F0472	_	F-box protein 600			11	LOC_Os11g29710. Os_F0472 in Hua et al. 2011.		Os11g0488900	LOC_Os11g29710.1						
17364	_	OsFbox601, Os_F0719	_	F-box protein 601			11	LOC_Os11g32810. Os_F0719 in Hua et al. 2011.		Os11g0532600	LOC_Os11g32810.1						
17365	_	OsFbox602, Os_F0512	_	F-box protein 602			11	LOC_Os11g32940. Os_F0512 in Hua et al. 2011.		Os11g0533800	LOC_Os11g32940.4, LOC_Os11g32940.3, LOC_Os11g32940.2, LOC_Os11g32940.1						
17366	_	OsFbox603, Os_F0489	_	F-box protein 603			11	LOC_Os11g33180. Os_F0489 in Hua et al. 2011.		Os11g0538300/Os11g0538350							
17367	_	OsFbox604, Os_F0232	_	F-box protein 604			11	LOC_Os11g33190. Os_F0489 in Hua et al. 2011.		Os11g0538400	LOC_Os11g33190.2, LOC_Os11g33190.1						
17368	_	OsFbox605, Os_F0437	_	F-box protein 605			11	LOC_Os11g33210. Os_F0437 in Hua et al. 2011.		Os11g0538600	LOC_Os11g33210.1						
17369	_	OsFbox606, Os_F0155	_	F-box protein 606			11	LOC_Os11g33220. Os_F0155 in Hua et al. 2011.		Os11g0538700	LOC_Os11g33220.1						
17370	_	OsFbox607, Os_F0045	_	F-box protein 607			11	LOC_Os11g33310. Os_F0045 in Hua et al. 2011.		Os11g0539600	LOC_Os11g33310.1						
17371	_	OsFbox608, Os_F0043	_	F-box protein 608			11	LOC_Os11g33320. Os_F0043 in Hua et al. 2011.		Os11g0539700	LOC_Os11g33320.1						
17372	_	OsFbox610, Os_F0557	_	F-box protein 610			11	LOC_Os11g36350. Os_F0557 in Hua et al. 2011.		Os11g0572000	LOC_Os11g36350.1						
17373	_	OsFbox612, Os_F0268	_	F-box protein 612			11	LOC_Os11g36610. Os_F0268 in Hua et al. 2011.		Os11g0574500	LOC_Os11g36610.1						
17374	_	OsFbox613, Os_F0243	_	F-box protein 613			11	LOC_Os11g37060. Os_F0243 in Hua et al. 2011.		Os11g0579600	LOC_Os11g37060.1						
17375	_	OsFbox614, Os_F0381	_	F-box protein 614			11	LOC_Os11g37300. Os_F0381 in Hua et al. 2011.		Os11g0582700	LOC_Os11g37300.1						
17376	_	OsFbox615, Os_F0099	_	F-box protein 615			11	LOC_Os11g37340. Os_F0099 in Hua et al. 2011.		Os11g0583300	LOC_Os11g37340.1						
17377	_	OsFbox616, Os_F0314	_	F-box protein 616			11	LOC_Os11g37390. Os_F0314 in Hua et al. 2011.		Os11g0584100	LOC_Os11g37390.1						
17378	_	OsFbox617, Os_F0505	_	F-box protein 617			11	LOC_Os11g38100. Os_F0505 in Hua et al. 2011.		Os11g0593400	LOC_Os11g38100.1						
17379	_	OsFbox618, Os_F0583	_	F-box protein 618			11	LOC_Os11g38120. Os_F0583 in Hua et al. 2011.		Os11g0593500	LOC_Os11g38120.1						
17380	_	OsFbox619, Os_F0190, OsSTA265	_	F-box protein 619			11	LOC_Os11g38130. Os_F0190 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0593600	LOC_Os11g38130.1						PO:0009066 - anther 
17381	_	OsFbox620, Os_F0358	_	F-box protein 620			11	LOC_Os11g38140. Os_F0358 in Hua et al. 2011.		Os11g0593700	LOC_Os11g38140.1						
17382	_	OsFbox621, Os_F0621	_	F-box protein 621			11	LOC_Os11g38180. Os_F0621 in Hua et al. 2011.		Os11g0594400	LOC_Os11g38180.1						
17383	_	OsFbox622, Os_F0499	_	F-box protein 622			11	LOC_Os11g38200. Os_F0499 in Hua et al. 2011.		Os11g0594600	LOC_Os11g38200.1						
17384	_	OsFbox623, Os_F0502	_	F-box protein 623			11	LOC_Os11g38230. Os_F0502 in Hua et al. 2011.		Os11g0594900	LOC_Os11g38230.1						
17385	_	OsFbox624, Os_F0226	_	F-box protein 624			11	LOC_Os11g38500. Os_F0226 in Hua et al. 2011.		Os11g0598000	LOC_Os11g38500.1						
17386	_	OsFbox625, Os_F0458	_	F-box protein 625			11	LOC_Os11g39559 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0458 in Hua et al. 2011.									
17387	_	OsFbox626	_	F-box protein 626			11	LOC_Os11g39609. 		Os11g0610240	LOC_Os11g39609.1						
17388	_	OsFbox627, Os_F0089	_	F-box protein 627			11	LOC_Os11g41560. Os_F0089 in Hua et al. 2011.		Os11g0633800	LOC_Os11g41560.1						
17389	_	OsFbox628, Os_F0028	_	F-box protein 628			11	LOC_Os11g41570. Os_F0028 in Hua et al. 2011.			LOC_Os11g41570						
17390	_	OsFbox629, Os_F0564	_	F-box protein 629			11	LOC_Os11g41860. Os_F0564 in Hua et al. 2011.		Os11g0637300	LOC_Os11g41860.2, LOC_Os11g41860.1						
17391	_	OsFbox630, Os_F0318	_	F-box protein 630			11	LOC_Os11g42230. Os_F0318 in Hua et al. 2011.		Os11g0641900	LOC_Os11g42230.1						
17392	_	OsFbox631, Os_F0064	_	F-box protein 631			11	LOC_Os11g42240. Os_F0064 in Hua et al. 2011.		Os11g0642000	LOC_Os11g42240.1						
17393	_	OsFbox632, Os_F0391	_	F-box protein 632			11	LOC_Os11g42270. Os_F0391 in Hua et al. 2011.		Os11g0642100	LOC_Os11g42270.1						
17394	_	OsFbox633, Os_F0413	_	F-box protein 633			11	LOC_Os11g42280. Os_F0413 in Hua et al. 2011.		Os11g0642300	LOC_Os11g42280.1						
17395	_	OsFbox634, Os_F0372	_	F-box protein 634			11	LOC_Os11g42300. Os_F0372 in Hua et al. 2011.		Os11g0642500	LOC_Os11g42300.1						
17396	_	OsFbox635, Os_F0310	_	F-box protein 635			11	LOC_Os11g42310. Os_F0310 in Hua et al. 2011.		Os11g0642600	LOC_Os11g42310.1						
17397	_	OsFbox636, Os_F0774	_	F-box protein 636			12	LOC_Os12g01760. Os_F0774 in Hua et al. 2011.		Os12g0108500	LOC_Os12g01760.1						
17398	_	OsFbox637, Os_F0061	_	F-box protein 637			12	LOC_Os12g03390. Os_F0061 in Hua et al. 2011.		Os12g0127400	LOC_Os12g03390.1						
17399	_	OsFbox638, Os_F0021	_	F-box protein 638			12	LOC_Os12g03440. Os_F0021 in Hua et al. 2011.		Os12g0128000	LOC_Os12g03440.1						
17400	_	OsFbox639, Os_F0382	_	F-box protein 639			12	LOC_Os12g03594. Os_F0382 in Hua et al. 2011.		Os12g0129700	LOC_Os12g03594.1						
17401	_	OsFbox640, Os_F0395	_	F-box protein 640			12	LOC_Os12g03740. Os_F0395 in Hua et al. 2011.		Os12g0131400	LOC_Os12g03740.1						
17402	_	OsFbox641, Os_F0319	_	F-box protein 641			12	LOC_Os12g04130. Os_F0319 in Hua et al. 2011.		Os12g0135200	LOC_Os12g04130.1						
17403	_	OsFbox642, Os_F0213	_	F-box protein 642			12	LOC_Os12g05609. Os_F0213 in Hua et al. 2011.		Os12g0152200	LOC_Os12g05609.1						
17404	_	OsFbox643	_	F-box protein 643			12	LOC_Os12g05709. 		Os12g0153400	LOC_Os12g05709.1						
17405	_	OsFbox644, Os_F0725	_	F-box protein 644			12	LOC_Os12g06030. Os_F0725 in Hua et al. 2011.		Os12g0156500	LOC_Os12g06030.1						
17406	_	OsFbox646, Os_F0134	_	F-box protein 646			12	LOC_Os12g06740. Os_F0134 in Hua et al. 2011.		Os12g0164300	LOC_Os12g06740.2, LOC_Os12g06740.1						
17407	_	OsFbox647, Os_F0466	_	F-box protein 647			12	LOC_Os12g27750. Os_F0466 in Hua et al. 2011.		Os12g0463500	LOC_Os12g27750.1						
17408	_	OsFbox648, Os_F0414	_	F-box protein 648			12	LOC_Os12g27760. Os_F0414 in Hua et al. 2011.			LOC_Os12g27760						
17409	_	OsFbox649, Os_F0410	_	F-box protein 649			12	LOC_Os12g27790. Os_F0410 in Hua et al. 2011.		Os12g0463700	LOC_Os12g27790.1						
17410	_	OsFbox650, Os_F0568	_	F-box protein 650			12	LOC_Os12g27810. Os_F0568 in Hua et al. 2011.		Os12g0464300	LOC_Os12g27810.1						
17411	_	OsFbox651, Os_F0018	_	F-box protein 651			12	LOC_Os12g30920. Os_F0018 in Hua et al. 2011.		Os12g0492900	LOC_Os12g30920.1						
17412	_	OsFbox652, Os_F0284	_	F-box protein 652			12	LOC_Os12g30940. Os_F0284 in Hua et al. 2011.		Os12g0493050	LOC_Os12g30940.1						
17413	_	OsFbox653, Os_F0172	_	F-box protein 653			12	LOC_Os12g30970 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0172 in Hua et al. 2011.									
17414	_	OsFbox654, Os_F0092	_	F-box protein 654			12	LOC_Os12g30990. Os_F0092 in Hua et al. 2011.		Os12g0493732	LOC_Os12g30990.1						
17415	_	OsFbox655, Os_F0116	_	F-box protein 655			12	LOC_Os12g31340. Os_F0116 in Hua et al. 2011.		Os12g0496700	LOC_Os12g31340.1						
17416	_	OsFbox656	_	F-box protein 656			12	LOC_Os12g32630. 		Os12g0511000	LOC_Os12g32630.2, LOC_Os12g32630.1						
17417	_	OsFbox657, Os_F0500	_	F-box protein 657			12	LOC_Os12g33210. Os_F0500 in Hua et al. 2011.		Os12g0516900	LOC_Os12g33210.1						
17418	_	OsFbox658, Os_F0589	_	F-box protein 658			12	LOC_Os12g33230. Os_F0589 in Hua et al. 2011.		Os12g0517100	LOC_Os12g33230.1						
17419	_	OsFbox659, Os_F0424	_	F-box protein 659			12	LOC_Os12g33830. Os_F0424 in Hua et al. 2011.		Os12g0522000	LOC_Os12g33830.1						
17420	_	OsFbox660, Os_F0569	_	F-box protein 660			12	LOC_Os12g34200. Os_F0569 in Hua et al. 2011.		Os12g0526400	LOC_Os12g34200.1						
17421	_	OsFbox661, Os_F0665	_	F-box protein 661			12	LOC_Os12g34220. Os_F0665 in Hua et al. 2011.		Os12g0526600	LOC_Os12g34220.1						
17422	_	OsFbox662, Os_F0567	_	F-box protein 662			12	LOC_Os12g34240. Os_F0567 in Hua et al. 2011.		Os12g0526800	LOC_Os12g34240.1						
17423	_	OsFbox663, Os_F0276	_	F-box protein 663			12	LOC_Os12g34270. Os_F0276 in Hua et al. 2011.		Os12g0527100	LOC_Os12g34270.1						
17424	_	OsFbox664, Os_F0592	_	F-box protein 664			12	LOC_Os12g34290. Os_F0592 in Hua et al. 2011.		Os12g0527400	LOC_Os12g34290.1						
17425	_	OsFbox665, Os_F0555	_	F-box protein 665			12	LOC_Os12g34300. Os_F0555 in Hua et al. 2011.		Os12g0527500	LOC_Os12g34300.1						
17426	_	OsFbox666, Os_F0411	_	F-box protein 666			12	LOC_Os12g34310. Os_F0411 in Hua et al. 2011.		Os12g0527600	LOC_Os12g34310.1						
17427	_	OsFbox667, Os_F0594	_	F-box protein 667			12	LOC_Os12g37110. Os_F0594 in Hua et al. 2011.		Os12g0557900	LOC_Os12g37110.1						
17428	_	OsFbox668, Os_F0389	_	F-box protein 668			12	LOC_Os12g37130. Os_F0389 in Hua et al. 2011.			LOC_Os12g37130						
17429	_	OsFbox669, Os_F0383	_	F-box protein 669			12	LOC_Os12g38090. Os_F0383 in Hua et al. 2011.		Os12g0568600	LOC_Os12g38090.1						
17430	_	OsFbox670, Os_F0419	_	F-box protein 670			12	LOC_Os12g39520. Os_F0419 in Hua et al. 2011.		Os12g0585300	LOC_Os12g39520.1						
17431	_	OsFbox671, Os_F0524	_	F-box protein 671			12	LOC_Os12g40140. Os_F0524 in Hua et al. 2011.		Os12g0592500	LOC_Os12g40140.1						
17432	_	OsFbox672, Os_F0707	_	F-box protein 672			12	LOC_Os12g40320. Os_F0707 in Hua et al. 2011.		Os12g0594700	LOC_Os12g40320.1, LOC_Os12g40310.1						
17433	_	OsFbox673, Os_F0735	_	F-box protein 673			12	LOC_Os12g40360. Os_F0735 in Hua et al. 2011.		Os12g0595300	LOC_Os12g40360.1						
17434	_	OsFbox674, Os_F0164	_	F-box protein 674			12	LOC_Os12g41300. Os_F0164 in Hua et al. 2011.		Os12g0606200	LOC_Os12g41300.1						
17435	_	OsFbox675, Os_F0744	_	F-box protein 675			12	LOC_Os12g41450. Os_F0744 in Hua et al. 2011.		Os12g0607800	LOC_Os12g41450.1						
17436	_	OsFbox676, Os_F0269	_	F-box protein 676			12	LOC_Os12g41630. Os_F0269 in Hua et al. 2011.		Os12g0609900	LOC_Os12g41630.1						
17437	_	OsFbox677, Os_F0195	_	F-box protein 677			12	LOC_Os12g42340. Os_F0195 in Hua et al. 2011.		Os12g0618150	LOC_Os12g42340.1						
17438	_	OsFbox678, Os_F0417	_	F-box protein 678			12	LOC_Os12g43770. Os_F0417 in Hua et al. 2011.			LOC_Os12g43770						
17439	_	Os_F0739, OsFBX2	_				1	F-box protein. LOC_Os01g05890. OsFBX2 in TIGR rice genome annotation.		Os01g0152200	LOC_Os01g05890.1						
17440	_	Os_F0780, OsFBX9	_				1	F-box protein. LOC_Os01g32640. OsFBX9 in TIGR rice genome annotation.		Os01g0509900	LOC_Os01g32640.1						
17441	_	Os_F0653	_				1	F-box protein. LOC_Os01g48250. 		Os01g0673300	LOC_Os01g48250.1						
17442	_	Os_F0138	_				2	F-box protein. LOC_Os02g46140. Os_F0138 in Hua et al. 2011.		Os02g0686500	LOC_Os02g46140.2, LOC_Os02g46140.1						
17443	_	Os_F0699	_				3	F-box protein. LOC_Os03g22990. 		Os03g0353300	LOC_Os03g22990.1						
17444	_	Os_F0798	_				4	F-box protein. LOC_Os04g08470. 			LOC_Os04g08470						
17445	_	Os_F0607	_				4	F-box protein. LOC_Os04g30200. 		Os04g0370500	LOC_Os04g30200.1						
17446	_	Os_F0687	_				4	F-box protein. LOC_Os04g30210. 		Os04g0370600	LOC_Os04g30210.1						
17447	_	Os_F0796	_				4	F-box protein. LOC_Os04g31610. 		Os04g0385600	LOC_Os04g31610.1						
17448	_	Os_F0756	_				4	F-box protein. LOC_Os04g40030. 		Os04g0476000	LOC_Os04g40030.1						
17449	_	Os_F0659	_				5	F-box protein. LOC_Os05g46050. 		Os05g0537700	LOC_Os05g46050.1						
17450	_	Os_F0344	_				6	F-box protein. LOC_Os06g50280. 		Os06g0716467	LOC_Os06g50280.1, LOC_Os06g50250.1						
17451	_		_				7	F-box protein. LOC_Os07g09110. 		Os07g0189400	LOC_Os07g09110.1						
17452	_	Os_F0785, OsEnS-103	_	endosperm-specific gene 103			7	F-box protein. LOC_Os07g13830. 		Os07g0242000	LOC_Os07g13830.1						
17453	_		_				7	F-box protein. LOC_Os07g35130. 		Os07g0535700	LOC_Os07g35130.1						
17454	_	Os_F0669	_				7	F-box protein. LOC_Os07g36360. 			LOC_Os07g36360						
17455	_	Os_F0733	_				8	F-box protein. LOC_Os08g06710. 		Os08g0164100	LOC_Os08g06710.1						
17456	_	Os_F0671	_				8	F-box protein. LOC_Os08g06780. 		Os08g0164600	LOC_Os08g06780.1						
17457	_		_				8	F-box protein. LOC_Os08g20440. 		Os08g0299600	LOC_Os08g20440.2, LOC_Os08g20440.1						
17458	_	Os_F0451	_				8	F-box protein. LOC_Os08g24190. 		Os08g0330900	LOC_Os08g24190.1						
17459	_	Os_F0695	_				8	F-box protein. LOC_Os08g33010. 		Os08g0426100	LOC_Os08g33010.1						
17460	_		_				9	F-box protein. LOC_Os09g21800 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17461	_		_				10	F-box protein. LOC_Os10g05000. 		Os10g0139500	LOC_Os10g05000.1						
17462	_	Os_F0794, OsFBDUF48, FBDUF48, PEG3	_	paternally expressed gene 3			10	F-box protein. LOC_Os10g37540. 	 Seed - Morphological traits,  Seed - Morphological traits - Embryo,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os10g0519800	LOC_Os10g37540.1					TO:0000149 - seed width, TO:0000696 - starch content, TO:0000304 - seed thickness, TO:0000382 - 1000-seed weight, TO:0000064 - embryo related trait	PO:0009089 - endosperm 
17463	_	Os_F0720	_				11	F-box protein. LOC_Os11g31620. Q2R3K5.		Os11g0515500	LOC_Os11g31620.1				GO:0000822 - inositol hexakisphosphate binding, GO:0019005 - SCF ubiquitin ligase complex, GO:0016567 - protein ubiquitination, GO:0010011 - auxin binding, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus		
17464	_	Os_F0247	_				11	F-box protein. LOC_Os11g36790.		Os11g0576400	LOC_Os11g36800.1, LOC_Os11g36790.1				GO:0010011 - auxin binding, GO:0005634 - nucleus, GO:0000822 - inositol hexakisphosphate binding, GO:0019005 - SCF ubiquitin ligase complex, GO:0016567 - protein ubiquitination, GO:0009734 - auxin mediated signaling pathway		
17465	_	Os_F0732	_				12	F-box protein. LOC_Os12g40310.		Os12g0594700	LOC_Os12g40320.1, LOC_Os12g40310.1				GO:0000822 - inositol hexakisphosphate binding, GO:0019005 - SCF ubiquitin ligase complex, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0016567 - protein ubiquitination, GO:0010011 - auxin binding		
17466	_	Os_F0668	_				1	F-box protein. LOC_Os01g06360.		Os01g0156500/Os01g0156600							
17467	_	Os_F0651	_				1	F-box protein. LOC_Os01g07170.		Os01g0165800	LOC_Os01g07170.1						
17468	ZYGO1	Os_F0777	ZYGOTENE 1	ZYGOTENE1		zygo1, zygo1-1, zygo1-2, zygo1-3, zygo1-4	1	F-box protein. LOC_Os01g11990. GO:0035825: homologous recombination. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0219200	LOC_Os01g11990.1				GO:0045141 - meiotic telomere clustering, GO:0060629 - regulation of homologous chromosome segregation		
17469	_	Os_F0797	_				1	F-box protein. LOC_Os01g14100.		Os01g0243200	LOC_Os01g14100.3, LOC_Os01g14100.2, LOC_Os01g14100.1						
17470	_	Os_F0781	_				1	F-box protein. LOC_Os01g27730.		Os01g0375000	LOC_Os01g27730.1				GO:0048444 - floral organ morphogenesis, GO:0006184 - GTP catabolic process, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0009506 - plasmodesma, GO:0005730 - nucleolus, GO:0042254 - ribosome biogenesis, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0010077 - maintenance of inflorescence meristem identity		
17471	_	Os_F0712	_				1	F-box protein. LOC_Os01g33650.		Os01g0520260	LOC_Os01g33650.1						
17472	_	Os_F0791	_				1	F-box protein. LOC_Os01g39690.		Os01g0578800	LOC_Os01g39690.1						
17473	_	Os_F0727	_				1	F-box protein. LOC_Os01g40120.		Os01g0583300	LOC_Os01g40120.1						
17474	_	Os_F0640	_				1	F-box protein. LOC_Os01g47130.		Os01g0660700	LOC_Os01g47130.1						
17475	_	Os_F0762	_				1	F-box protein. LOC_Os01g54770.		Os01g0751200/Os01g0751250							
17476	_	Os_F0743	_				1	F-box protein. LOC_Os01g58670.		Os01g0800900	LOC_Os01g58670.1						
17477	_	Os_F0745	_				2	F-box protein. LOC_Os02g07470 (not found in MSU Rice Genome Annotation Project Release 7 data).									
17478	_	Os_F0478	_				2	F-box protein. LOC_Os02g18614.		Os02g0287800	LOC_Os02g18620.1, LOC_Os02g18614.1						
17479	_	Os_F0610	_				2	F-box protein. LOC_Os02g18720.		Os02g0288925	LOC_Os02g18720.1						
17480	_	Os_F0647	_				2	F-box protein. LOC_Os02g19410.			LOC_Os02g19410						
17481	_	Os_F0770	_				2	F-box protein. LOC_Os02g21220.		Os02g0317100	LOC_Os02g21220.1						
17482	_	Os_F0768	_				2	F-box protein. LOC_Os02g21310.		Os02g0318200	LOC_Os02g21310.1						
17483	_	Os_F0751	_				2	F-box protein. LOC_Os02g44104.		Os02g0658500	LOC_Os02g44104.3, LOC_Os02g44104.2, LOC_Os02g44104.1						
17484	_	Os_F0676	_				2	F-box protein. LOC_Os02g45000.		Os02g0671200	LOC_Os02g45000.1						
17485	_	Os_F0734	_				1	F-box protein. LOC_Os01g27680.		Os01g0374400	LOC_Os01g27680.1						
17486	_	Os_F0571	_				1	F-box protein. LOC_Os01g34630.		Os01g0530500	LOC_Os01g34630.1						
17487	_	Os_F0737	_				1	F-box protein. LOC_Os01g40240.			LOC_Os01g40240						
17488	_	Os_F0670	_				1	F-box protein. LOC_Os01g50840.		Os01g0704300	LOC_Os01g50840.1						
17489	_	Os_F0738	_				2	F-box protein. LOC_Os02g44750.			LOC_Os02g44750						
17490	_	Os_F0767, OsTIR1	_				2	F-box protein. LOC_Os02g52230.		Os02g0759700	LOC_Os02g52230.1				GO:0009734 - auxin mediated signaling pathway		
17491	_	Os_F0752	_				2	F-box protein. LOC_Os02g55550.		Os02g0798900	LOC_Os02g55550.1						
17492	_	Os_F0404	_				3	F-box protein. LOC_Os03g06100.		Os03g0157000	LOC_Os03g06100.1						
17493	_	Os_F0726	_				4	F-box protein. LOC_Os04g40920.		Os04g0486300	LOC_Os04g40920.2, LOC_Os04g40920.1						
17494	_	Os_F0617	_				5	F-box protein. LOC_Os05g02570.		Os05g0116600	LOC_Os05g02570.1						
17495	_	Os_F0029	_				5	F-box protein. LOC_Os05g23810.		Os05g0303900	LOC_Os05g23810.1						
17496	_	Os_F0724	_				5	F-box protein. LOC_Os05g40430.			LOC_Os05g40430						
17497	_	Os_F0729	_				5	F-box protein. LOC_Os05g40450.			LOC_Os05g40450						
17498	_	Os_F0708	_				5	F-box protein. LOC_Os05g46090.		Os05g0538250	LOC_Os05g46090.1						
17499	_	Os_F0297	_				5	F-box protein. LOC_Os05g49540.		Os05g0570700	LOC_Os05g49540.1						
17500	_	Os_F0007	_				6	F-box protein. LOC_Os06g07390.		Os06g0170750/Os06g0170766							
17501	_	Os_F0283	_				7	F-box protein. LOC_Os07g17570.			LOC_Os07g17570						
17502	_	Os_F0782	_				7	F-box protein. LOC_Os07g34620.		Os07g0530400	LOC_Os07g34620.1						
17503	_	Os_F0741	_				7	F-box protein. LOC_Os07g39000.		Os07g0578125	LOC_Os07g39000.1						
17504	_	Os_F0240	_				2	F-box protein. LOC_Os02g57965.		Os02g0826050	LOC_Os02g57965.1						
17505	_	Os_F0716	_				3	F-box protein. LOC_Os03g02560.		Os03g0116800	LOC_Os03g02560.1						
17506	_	Os_F0701, OsAFB6, AFB6	_	Auxin-signaling F-Box 6			3	F-box protein. LOC_Os03g08850.	 Reproductive organ - Heading date,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os03g0187500	LOC_Os03g08850.1				GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0010081 - regulation of inflorescence meristem growth	TO:0000547 - primary branch number, TO:0000396 - grain yield, TO:0000040 - panicle length, TO:0000227 - root length, TO:0000346 - tiller number, TO:0000397 - grain size, TO:0000137 - days to heading, TO:0002672 - auxin content, TO:0002660 - cytokinin content, TO:0006032 - panicle size, TO:0000456 - spikelet number, TO:0000557 - secondary branch number	PO:0009049 - inflorescence , PO:0009073 - stigma , PO:0020003 - plant ovule , PO:0020148 - shoot apical meristem , PO:0020032 - plumule 
17507	_	Os_F0559	_				3	F-box protein. LOC_Os03g41290.		Os03g0609100	LOC_Os03g41290.1						
17508	_	Os_F0792	_				3	F-box protein. LOC_Os03g42730.			LOC_Os03g42730						
17509	_	Os_F0746	_				3	F-box protein. LOC_Os03g57830.		Os03g0792300	LOC_Os03g57830.1						
17510	_	Os_F0786	_				4	F-box protein. LOC_Os04g08160.			LOC_Os04g08160						
17511	_	Os_F0696	_				5	F-box protein. LOC_Os05g40570.			LOC_Os05g40570						
17512	_	Os_F0787	_				5	F-box protein. LOC_Os05g40590.			LOC_Os05g40590						
17513	_	Os_F0757	_				5	F-box protein. LOC_Os05g41490. Similar to Circadian clock coupling factor ZGT.	 Tolerance and resistance - Stress tolerance	Os05g0494600	LOC_Os05g41490.1				GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0010029 - regulation of seed germination	TO:0000276 - drought tolerance	
17514	_	Os_F0766	_				5	F-box protein. LOC_Os05g45470.		Os05g0531300	LOC_Os05g45470.1						
17515	_	Os_F0697	_				5	F-box protein. LOC_Os05g49510.		Os05g0570350	LOC_Os05g49510.1						
17516	_	Os_F0663	_				6	F-box protein. LOC_Os06g47120.		Os06g0685200	LOC_Os06g47120.1						
17517	_	Os_F0748	_				7	F-box protein. LOC_Os07g18630.		Os07g0286400	LOC_Os07g18630.1						
17518	_	Os_F0764	_				7	F-box protein. LOC_Os07g40160.		Os07g0591300	LOC_Os07g40160.1						
17519	_	Os_F0793	_				7	F-box protein. LOC_Os07g40710.		Os07g0598200	LOC_Os07g40710.2, LOC_Os07g40710.1						
17520	_	Os_F0606	_				7	F-box protein. LOC_Os07g45010.		Os07g0644700	LOC_Os07g45010.1						
17521	_	Os_F0300	_				7	F-box protein. LOC_Os07g46555.		Os07g0659700	LOC_Os07g46555.1						
17522	_	Os_F0199	_				8	F-box protein. LOC_Os08g09715.		Os08g0197050	LOC_Os08g09715.1						
17523	_	Os_F0765	_				8	F-box protein. LOC_Os08g13360.		Os08g0230300	LOC_Os08g13360.2, LOC_Os08g13360.1						
17524	_	Os_F0586	_				8	F-box protein. LOC_Os08g25650.		Os08g0344700	LOC_Os08g25650.1						
17525	_	Os_F0795	_				8	F-box protein. LOC_Os08g31270.			LOC_Os08g31270						
17526	_	Os_F0790	_				8	F-box protein. LOC_Os08g36570.		Os08g0469500	LOC_Os08g36570.1						
17527	_	Os_F0779	_				8	F-box protein. LOC_Os08g39060.		Os08g0499900	LOC_Os08g39060.3, LOC_Os08g39060.2, LOC_Os08g39060.1						
17528	_	Os_F0709	_				9	F-box protein. LOC_Os09g06660.		Os09g0242000	LOC_Os09g06660.1						
17529	_	Os_F0736	_				9	F-box protein. LOC_Os09g15660.		Os09g0325500	LOC_Os09g15660.1						
17530	_	Os_F0715	_				9	F-box protein. LOC_Os09g22420.		Os09g0391600	LOC_Os09g22420.1						
17531	_	Os_F0740	_				9	F-box protein. LOC_Os09g32400.			LOC_Os09g32400						
17532	_	Os_F0710	_				9	F-box protein. LOC_Os09g32580.		Os09g0502600	LOC_Os09g32580.1						
17533	_	Os_F0789	_				9	F-box protein. LOC_Os09g32610.		Os09g0502900	LOC_Os09g32610.1						
17534	_	Os_F0601	_				9	F-box protein. LOC_Os09g37110.		Os09g0543300	LOC_Os09g37110.1						
17535	_	Os_F0661	_				7	F-box protein. LOC_Os07g47170.		Os07g0667700	LOC_Os07g47170.1						
17536	_	Os_F0662	_				8	F-box protein. LOC_Os08g17130.		Os08g0272900/Os08g0272950							
17537	_	Os_F0488	_				8	F-box protein. LOC_Os08g40640.		Os08g0518300	LOC_Os08g40640.1						
17538	_	Os_F0448	_				9	F-box protein. LOC_Os09g15460.		Os09g0323400	LOC_Os09g15460.1						
17539	_	Os_F0689	_				9	F-box protein. LOC_Os09g33620.		Os09g0510900	LOC_Os09g33620.1						
17540	_	Os_F0783	_				9	F-box protein. LOC_Os09g38900.		Os09g0562400	LOC_Os09g38900.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
17541	_	Os_F0581	_				10	F-box protein. LOC_Os10g03680 (not found in MSU Rice Genome Annotation Project Release 7 data).									
17542	_	Os_F0711	_				10	F-box protein. LOC_Os10g05800.		Os10g0148800	LOC_Os10g05800.2, LOC_Os10g05800.1						
17543	_	Os_F0772	_				10	F-box protein. LOC_Os10g41850.		Os10g0568000	LOC_Os10g41850.1						
17544	_	Os_F0627	_				11	F-box protein. LOC_Os11g05590.		Os11g0154200	LOC_Os11g05590.1						
17546	_	Os_F0723	_				11	F-box protein. LOC_Os11g42160.		Os11g0641200	LOC_Os11g42160.1						
17547	_	Os_F0684	_				12	F-box protein. LOC_Os12g34210.		Os12g0526500	LOC_Os12g34210.1						
17548	_	Os_F0742	_				10	F-box protein. LOC_Os10g03900.			LOC_Os10g03900						
17549	_	Os_F0753	_				10	F-box protein. LOC_Os10g07430.		Os10g0161700	LOC_Os10g07430.1						
17550	_	Os_F0664	_				10	F-box protein. LOC_Os10g24370.		Os10g0384600	LOC_Os10g24370.1						
17551	_	Os_F0778	_				10	F-box protein. LOC_Os10g37580.		Os10g0520200	LOC_Os10g37580.1						
17552	_	Os_F0771	_				10	F-box protein. LOC_Os10g37600.		Os10g0520400	LOC_Os10g37600.1						
17553	_	Os_F0031	_				11	F-box protein. LOC_Os11g09395.			LOC_Os11g09395						
17554	_	Os_F0079	_				11	F-box protein. LOC_Os11g09418.		Os11g0200600	LOC_Os11g09418.1						
17555	_	Os_F0390	_				11	F-box protein. LOC_Os11g09474.		Os11g0200950/Os11g0201299							
17556	_	Os_F0253	_				11	F-box protein. LOC_Os11g09478.		Os11g0201360	LOC_Os11g09478.1						
17557	_	Os_F0690, Fbox-12-pseuso	_	F-box family-12 pseudogene			11	LOC_Os11g10160. J11-12: japonica in Ammiraju et al. 2008. Os_F0690 in Hua et al. 2011.		Os11g0207800	LOC_Os11g10160.1						
17558	_	Os_F0761, Fbox-7	_	F-box family-7			11	LOC_Os11g10250. J11-7: japonica in Ammiraju et al. 2008. Os_F0761 in Hua et al. 2011.		Os11g0208600	LOC_Os11g10250.1						
17559	_	Os_F0257, Fbox-2	_	F-box family-2			11	LOC_Os11g10384 (not found in MSU Rice Genome Annotation Project Release 7 data). J11-2: japonica in Ammiraju et al. 2008. Os_F0257 in Hua et al. 2011.									
17560	_	Os_F0758	_				11	F-box protein. LOC_Os11g32360.		Os11g0526800	LOC_Os11g32360.2, LOC_Os11g32360.1						
17561	_	Os_F0718	_				11	F-box protein. LOC_Os11g38070.		Os11g0593100	LOC_Os11g38070.1						
17562	_	Os_F0650	_				11	F-box protein. LOC_Os11g47660.		Os11g0702800	LOC_Os11g47660.1						
17563	_	Os_F0686	_				12	F-box protein. LOC_Os12g31040.		Os12g0494500	LOC_Os12g31040.1						
17564	_	Os_F0691	_				12	F-box protein. LOC_Os12g33220.		Os12g0517000	LOC_Os12g33220.1						
17565	_	Os_F0700	_				12	F-box protein. LOC_Os12g34960.		Os12g0535000	LOC_Os12g34960.1						
17566	_	Os_F0763	_				12	F-box protein. LOC_Os12g37150.		Os12g0558366	LOC_Os12g37150.1						
17567	_	Os_F0799	_				12	F-box protein. LOC_Os12g39460.			LOC_Os12g39460						
17568	_	Os_F0680	_				12	F-box protein. LOC_Os12g41460.		Os12g0607950/Os12g0608100							
17569	_	Os_F0776	_				12	F-box protein. LOC_Os12g40350.		Os12g0595200	LOC_Os12g40350.1						
17570	_	Os_F0685	_				12	F-box protein. LOC_Os12g40860.		Os12g0601000	LOC_Os12g40860.1				GO:0055047 - generative cell mitosis, GO:0048316 - seed development, GO:0009555 - pollen development, GO:0001673 - male germ cell nucleus, GO:0019005 - SCF ubiquitin ligase complex, GO:0009790 - embryonic development, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process		
17571	_	Os_F0769	_				12	F-box protein. LOC_Os12g42360.			LOC_Os12g42360						
17572	_		_				1	F-box protein. LOC_Os01g56730.		Os01g0774200	LOC_Os01g56730.1						
17573	_		_				1	F-box protein. LOC_Os01g65920.		Os01g0881900	LOC_Os01g65920.2, LOC_Os01g65920.1						
17574	_		_				2	F-box protein. LOC_Os02g05600.		Os02g0149500	LOC_Os02g05600.1						
17575	_		_				2	F-box protein. LOC_Os02g47490.		Os02g0703800	LOC_Os02g47490.1						
17576	_		_				2	F-box protein. LOC_Os02g57870.		Os02g0824900	LOC_Os02g57870.2, LOC_Os02g57870.1						
17577	_	OsIRL6	_	intracellular Ras-group-related LRR protein 6			2	F-box protein. LOC_Os02g58030. Q6K7R2.		Os02g0826600	LOC_Os02g58030.1						
17578	_		_				3	F-box protein. LOC_Os03g11880 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17579	_		_				3	F-box protein. LOC_Os03g25710. 		Os03g0374050	LOC_Os03g25710.1						
17580	_		_				3	F-box protein. LOC_Os03g36450 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17581	_		_				3	F-box protein. LOC_Os03g40410. 		Os03g0601100	LOC_Os03g40410.3, LOC_Os03g40410.2, LOC_Os03g40410.1						
17582	_		_				3	F-box protein. LOC_Os03g49690. 		Os03g0703800	LOC_Os03g49690.1						
17583	_		_				3	F-box protein. LOC_Os03g58760 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17584	_		_				4	F-box protein. LOC_Os04g47550. 		Os04g0563300	LOC_Os04g47550.2, LOC_Os04g47550.1						
17585	_		_				4	F-box protein. LOC_Os04g53520. 		Os04g0626700	LOC_Os04g53520.1						
17586	_		_				5	F-box protein. LOC_Os05g44580. 		Os05g0521400	LOC_Os05g44580.1						
17587	_		_				6	F-box protein. LOC_Os06g02050 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17588	_		_				6	F-box protein. LOC_Os06g04710. 		Os06g0139000	LOC_Os06g04710.1						
17589	_		_				6	F-box protein. LOC_Os06g07400. 		Os06g0170800	LOC_Os06g07400.1				GO:0004190 - aspartic-type endopeptidase activity		
17590	_		_				6	F-box protein. LOC_Os07g01460. 		Os07g0105200	LOC_Os07g01460.1				GO:0004190 - aspartic-type endopeptidase activity		
17591	_		_				7	F-box protein. LOC_Os07g09810 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17592	_		_				7	F-box protein. LOC_Os07g27490. 		Os07g0459400	LOC_Os07g27490.2, LOC_Os07g27490.1						
17593	_		_				7	F-box protein. LOC_Os07g45120. 			LOC_Os07g45120						
17594	_		_				7	F-box protein. LOC_Os07g46560. 		Os07g0659800	LOC_Os07g46560.1				GO:0007275 - multicellular organismal development, GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0004842 - ubiquitin-protein ligase activity		
17595	_		_				8	F-box protein. LOC_Os08g05350 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17597	_		_				8	F-box protein. LOC_Os08g19680. 		Os08g0293200	LOC_Os08g19680.1						
17598	_		_				8	F-box protein. LOC_Os08g20510 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17599	_		_				8	F-box protein. LOC_Os08g35950 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17600	_		_				9	F-box protein. LOC_Os09g02530. 		Os09g0113000	LOC_Os09g02530.1						
17601	_		_				9	F-box protein. LOC_Os09g17150 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17602	_		_				9	F-box protein. LOC_Os09g19720. 		Os09g0361300	LOC_Os09g19720.1						
17603	_		_				9	F-box protein. LOC_Os09g39180. 		Os09g0565200	LOC_Os09g39180.1				GO:0016553 - base conversion or substitution editing, GO:0009631 - cold acclimation, GO:0045087 - innate immune response, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0009535 - chloroplast thylakoid membrane, GO:0030529 - ribonucleoprotein complex, GO:0008266 - poly(U) RNA binding, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0019013 - viral nucleocapsid, GO:0043489 - RNA stabilization		
17604	_		_				10	F-box protein. LOC_Os10g04650 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17605	_		_				10	F-box protein. LOC_Os10g38890. 		Os10g0532800	LOC_Os10g38890.1						
17606	_		_				10	F-box protein. LOC_Os10g41840 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17607	_		_				11	F-box protein. LOC_Os11g09400 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17608	_		_				11	F-box protein. LOC_Os11g10380 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17609	_		_				11	F-box protein. LOC_Os11g39560 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17610	_		_				11	F-box protein. LOC_Os11g39610 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17611	_		_				12	F-box protein. LOC_Os12g03600 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17612	_		_				12	F-box protein. LOC_Os12g05610 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17613	_		_				12	F-box protein. LOC_Os12g05710 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17614	_		_				12	F-box protein. LOC_Os12g30950. 		Os12g0493200	LOC_Os12g30950.1						
17615	_		_				12	F-box protein. LOC_Os12g37160. 		Os12g0558400	LOC_Os12g37160.3, LOC_Os12g37160.2, LOC_Os12g37160.1						
17616	_		_				12	F-box protein. LOC_Os12g42350 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17617	_	Fbox-14	_	F-box family-14			11	LOC_Os11g09960. J11-14: japonica in Ammiraju et al. 2008. 		Os11g0205800	LOC_Os11g09960.1						
17618	_	Fbox-9-pseudo, Os_F0394	_	F-box family-9 pseudogene			11	LOC_Os11g10230 + LOC_Os11g10220 pseudogene. J11-9: japonica in Ammiraju et al. 2008. 		Os11g0208300	LOC_Os11g10230.1, LOC_Os11g10220.1						
17619	_		_	DNA-directed RNA polymerase 40K polypeptide			3	D16028. 	 Other	Os03g0295400	LOC_Os03g18410.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity, GO:0005730 - nucleolus		
17620	_		_	G10 protein			12	D15758. P35682.		Os12g0149800	LOC_Os12g05410.2, LOC_Os12g05410.1				GO:0005634 - nucleus		
17621	_		_	General matrix processing protease			12	D23396.	 Biochemical character	Os01g0739000	LOC_Os01g53700.1				GO:0005750 - mitochondrial respiratory chain complex III, GO:0004222 - metalloendopeptidase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0005774 - vacuolar membrane, GO:0005741 - mitochondrial outer membrane, GO:0005759 - mitochondrial matrix, GO:0005758 - mitochondrial intermembrane space, GO:0009507 - chloroplast, GO:0009651 - response to salt stress		
17622	_		_	"\"Glucan endo-1, 3-beta-glucosidase\""			1	D15500.	 Biochemical character	Os01g0860800	LOC_Os01g64170.5, LOC_Os01g64170.4, LOC_Os01g64170.3, LOC_Os01g64170.2, LOC_Os01g64170.1				GO:0005634 - nucleus, GO:0005975 - carbohydrate metabolic process, GO:0046658 - anchored to plasma membrane, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
17623	_		_	Glycine cleavage system H protein			6	D15379.	 Biochemical character	Os06g0667600	LOC_Os06g45670.1				GO:0005960 - glycine cleavage complex, GO:0019464 - glycine decarboxylation via glycine cleavage system		
17624	_		_	Glycine-rich cell wall structural protein			10	D15464.		Os10g0451900	LOC_Os10g31440.2, LOC_Os10g31440.1						
17625	_	htpB	_	heat-shock protein 60			3	D16063.		Os03g0143400	LOC_Os03g04970.1				GO:0042026 - protein refolding, GO:0009408 - response to heat, GO:0005886 - plasma membrane, GO:0009570 - chloroplast stroma, GO:0009941 - chloroplast envelope, GO:0046686 - response to cadmium ion, GO:0005774 - vacuolar membrane, GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0005759 - mitochondrial matrix, GO:0022626 - cytosolic ribosome		
17626	_	OsMed37_1, Med37_1	_	heat-shock protein 70, heat-shock protein cognate 70, Mediator 37_1			1	D15636, D22565. LOC_Os01g62290.	 Tolerance and resistance - Stress tolerance	Os01g0840100	LOC_Os01g62290.2, LOC_Os01g62290.1				GO:0006950 - response to stress, GO:0005524 - ATP binding		
17628	_		_	high-mobility group protein			2	D22537.		Os02g0670400	LOC_Os02g44930.1						
17629	_		_	Histone H2A			3	D16020. Q94E96. up-regulated after fertilization (Abiko et al. 2013).		Os03g0279200 	LOC_Os03g17100.1				GO:0006334 - nucleosome assembly, GO:0009790 - embryonic development, GO:0000786 - nucleosome, GO:0003677 - DNA binding, GO:0005634 - nucleus		
17630	_		_	Histone H2A.hv1			3	D15845. Q84MP7.		Os03g0743400	LOC_Os03g53190.2, LOC_Os03g53190.1				GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly, GO:0042742 - defense response to bacterium, GO:0016048 - detection of temperature stimulus, GO:0009908 - flower development, GO:0044030 - regulation of DNA methylation, GO:0009909 - regulation of flower development, GO:0010468 - regulation of gene expression, GO:0005730 - nucleolus, GO:0000786 - nucleosome		
17631	_		_	Histone H3, Histone H3.3			6	D16068, D15959. Q0JCT1.		Os06g0130900 	LOC_Os06g04030.1				GO:0005515 - protein binding, GO:0003677 - DNA binding, GO:0000786 - nucleosome, GO:0006334 - nucleosome assembly, GO:0005634 - nucleus		
17632	_		_	Histone H4			1	D15291.		Os01g0835900	LOC_Os01g61920.1				GO:0005774 - vacuolar membrane, GO:0009506 - plasmodesma, GO:0009579 - thylakoid, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0000786 - nucleosome, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly, GO:0009414 - response to water deprivation, GO:0005730 - nucleolus, GO:0005886 - plasma membrane		
17633	_		_				5	D16073. Q0DKF0.		Os05g0169100	LOC_Os05g07700.4, LOC_Os05g07700.3, LOC_Os05g07700.1				GO:0016020 - membrane, GO:0005840 - ribosome, GO:0032502 - developmental process, GO:0009941 - chloroplast envelope, GO:0006412 - translation, GO:0010224 - response to UV-B, GO:0003735 - structural constituent of ribosome		
17634	_		_	Ribosomal protein S8			4	D23513, D15520.		Os04g0349500	LOC_Os04g28180.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0006414 - translational elongation, GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0003735 - structural constituent of ribosome, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0005886 - plasma membrane		
17635	_		_				6	D15884.		Os06g0665000	LOC_Os06g45430.1				GO:0005886 - plasma membrane, GO:0015914 - phospholipid transport		
17636	_	OsRH2, RH2, eIF4A-3	_	initiation factor eIF-4A, RNA helices 2, Eukaryotic initiation factor 4A-3			1	D22665. Q5VNM3. LOC_Os01g45190. DEAD-box RNA helicase protein. homologous to eukaryotic initiation factor 4AIII (eIF4AIII). major eIF4AIII in rice.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility,  Seed,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0639100	LOC_Os01g45190.3, LOC_Os01g45190.1				GO:0009555 - pollen development, GO:0001666 - response to hypoxia, GO:0003723 - RNA binding, GO:0035145 - exon-exon junction complex, GO:0005737 - cytoplasm, GO:0048573 - photoperiodism, flowering, GO:0005634 - nucleus, GO:0080050 - regulation of seed development, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0006397 - mRNA processing, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0006364 - rRNA processing, GO:0048653 - anther development, GO:0016020 - membrane, GO:0016607 - nuclear speck, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0005730 - nucleolus, GO:0009790 - embryonic development	TO:0000620 - embryo development trait, TO:0000166 - gibberellic acid sensitivity, TO:0000653 - seed development trait, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0000145 - internode length, TO:0000207 - plant height	PO:0007631 - plant embryo stage , PO:0001170 - seed development stage , PO:0001007 - pollen development stage , PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0001004 - anther development stage 
17637	_	eIF-5A-2	_	initiation factor eIF-5A, Eukaryotic translation initiation factor 5A-2			3	D15348. eIF-5A-2 in Yu et al 2017.	 Tolerance and resistance - Stress tolerance	Os03g0758800	LOC_Os03g55150.6, LOC_Os03g55150.5, LOC_Os03g55150.4, LOC_Os03g55150.1				GO:0006452 - translational frameshifting, GO:0008612 - peptidyl-lysine modification to hypusine, GO:0010089 - xylem development, GO:0043022 - ribosome binding, GO:0045901 - positive regulation of translational elongation, GO:0045905 - positive regulation of translational termination, GO:0009651 - response to salt stress, GO:0003743 - translation initiation factor activity, GO:0003746 - translation elongation factor activity	TO:0006001 - salt tolerance	
17638	_		_	Inorganic pyrophosphatase, sPPase, Soluble Inorganic Pyrophosphatase			4	D15686.	 Biochemical character	Os04g0687100	LOC_Os04g59040.1, LOC_Os04g59040.3, LOC_Os04g59040.2				GO:0005829 - cytosol, GO:0006796 - phosphate metabolic process, GO:0005737 - cytoplasm, GO:0004427 - inorganic diphosphatase activity, GO:0000287 - magnesium ion binding		
17639	_		_	Laminin receptor			3	D16087.		Os03g0182600 	LOC_Os03g08440.2, LOC_Os03g08440.1				GO:0016020 - membrane, GO:0000028 - ribosomal small subunit assembly, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009507 - chloroplast, GO:0015935 - small ribosomal subunit, GO:0022627 - cytosolic small ribosomal subunit		
17640	_		_	Lipoamide dehydrogenase			5	D15684.	 Biochemical character	Os05g0160000 	LOC_Os05g06750.1				GO:0016491 - oxidoreductase activity, GO:0050660 - FAD binding, GO:0045454 - cell redox homeostasis		
17641	_		_	NADH dehydrogenase (ubiquinone)			7	D22991.	 Biochemical character	Os07g0645400	LOC_Os07g45090.1				GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0051287 - NAD or NADH binding, GO:0010181 - FMN binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0005747 - mitochondrial respiratory chain complex I		
17642	_	OsMed36_2, Med36_2	_	Nucleolar protein 1, Mediator 36_2			5	D15995. 	 Biochemical character	Os05g0176000	LOC_Os05g08360.1, LOC_Os05g08360.2				GO:0003723 - RNA binding, GO:0006364 - rRNA processing, GO:0008033 - tRNA processing, GO:0008168 - methyltransferase activity		
17643	_	SUP44	_	Omnipotent suppressor protein SUP44			3	D15869.		Os03g0807800	LOC_Os03g59310.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0022627 - cytosolic small ribosomal subunit, GO:0009507 - chloroplast, GO:0005618 - cell wall, GO:0003723 - RNA binding		
17644	_		_	2-oxoglutarate dehydrogenase E1 component			7	D15178.	 Biochemical character	Os07g0695800	LOC_Os07g49520.1				GO:0006099 - tricarboxylic acid cycle, GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity, GO:0030976 - thiamin pyrophosphate binding		
17645	_		_	Par gene protein			7	D22794.	 Biochemical character	Os07g0647500	LOC_Os07g45320.1				GO:0004129 - cytochrome-c oxidase activity, GO:0005746 - mitochondrial respiratory chain		
17646	PGK2	OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP	PHOSPHOGLYCERATE KINASE 2	"\"phosphoglycerate kinase, cytosolic\", Phosphoglycerate kinase 2, phosphoglycerate kinase-2, Phosphoglycerate kinase protein"	PHOSPHOGLYCERATE KINASE 2		2	D16080. BF889441. LOC_Os02g07260. OsPGK2 in Joshi et al. 2015.	 Biochemical character,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0169300	LOC_Os02g07260.3, LOC_Os02g07260.2, LOC_Os02g07260.1				GO:0005524 - ATP binding, GO:0006096 - glycolysis, GO:0009415 - response to water, GO:0050801 - ion homeostasis, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0004618 - phosphoglycerate kinase activity, GO:0050832 - defense response to fungus	TO:0000237 - water stress trait, TO:0000495 - chlorophyll content, TO:0006001 - salt tolerance, TO:0000566 - stomatal frequency, TO:0006002 - proline content, TO:0000074 - blast disease	PO:0007022 - seed imbibition stage 
17647	_	OsPABPC1, PABPC1	_	Polyadenylate-binding protein			9	D15488, D15397. a homolog of AtPABP8. LOC_Os09g02700. SGs (stress granules) marker.		Os09g0115400	LOC_Os09g02700.1				GO:0003723 - RNA binding, GO:0000166 - nucleotide binding		
17648	_		_	Processing peptidase catalytic chain			5	D15329.	 Biochemical character	Os05g0524300	LOC_Os05g44916.2, LOC_Os05g44916.1				GO:0046872 - metal ion binding, GO:0004222 - metalloendopeptidase activity		
17649	_	OsPOP1, POP1	_	Prolyl endopeptidase, Prolyl Oligopeptidase 1, PROLYL OLIGOPEPTIDASE 1			1	D16061. LOC_Os01g01830. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). (http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml) GO:0120126: response to copper ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0108200	LOC_Os01g01830.1				GO:0009507 - chloroplast, GO:0046688 - response to copper ion, GO:0004252 - serine-type endopeptidase activity, GO:0070008 - serine-type exopeptidase activity	TO:0000021 - copper sensitivity	
17650	_		_	Protein kinase C homolog			9	D15569.		Os09g0478500	LOC_Os09g30150.3, LOC_Os09g30150.2, LOC_Os09g30150.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
17651	_	PRP-22	_	PRP-22 protein			3	D16069. pre-mRNA splicing protein.		Os03g0314100	LOC_Os03g19960.2, LOC_Os03g19960.1				GO:0016020 - membrane, GO:0005829 - cytosol, GO:0009941 - chloroplast envelope, GO:0005524 - ATP binding, GO:0003676 - nucleic acid binding, GO:0005730 - nucleolus, GO:0008026 - ATP-dependent helicase activity		
17652	_		_	Pyruvate decarboxylase			5	D15369.	 Biochemical character	Os05g0469800	LOC_Os05g39320.1				GO:0030976 - thiamin pyrophosphate binding, GO:0000287 - magnesium ion binding, GO:0003824 - catalytic activity		
17653	_		_	Pyruvate kinase			11	D22530.	 Biochemical character	Os11g0216000	LOC_Os11g10980.1				GO:0004743 - pyruvate kinase activity, GO:0030955 - potassium ion binding, GO:0006096 - glycolysis, GO:0000287 - magnesium ion binding		
17654	_	Dhr6, OsUBC5b, OsUBC16, UBC16	_	RAD6 DNA-repair homolog Dhr6, Ubiquitin-conjugation enzyme, Ubiquitin-conjugating enzyme 16			4	D15998. D50574. LOC_Os04g57220.	 Biochemical character,  Vegetative organ - Leaf	Os04g0667800	LOC_Os04g57220.4, LOC_Os04g57220.3, LOC_Os04g57220.2, LOC_Os04g57220.1				GO:0016881 - acid-amino acid ligase activity, GO:0009737 - response to abscisic acid stimulus, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
17655	_		_	Ribosomal protein 1024			11	D16058.		Os11g0602600 	LOC_Os11g38959.1				GO:0019843 - rRNA binding, GO:0015935 - small ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17656	_		_	Ribosomal protein L11e			1	D15590.		Os01g0205500	LOC_Os01g10820.1				GO:0006412 - translation, GO:0016020 - membrane, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0005773 - vacuole		
17657	_	RPL12, RPL10, OsRPL12, OsRPL10	_	Ribosomal protein L12, Ribosomal protein L10			4	LOC_Os04g50990.1 D15738. RPL10 in Moin et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os04g0598200	LOC_Os04g50990.1				GO:0009414 - response to water deprivation, GO:0000027 - ribosomal large subunit assembly, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0005773 - vacuole, GO:0006412 - translation, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0019843 - rRNA binding, GO:0016020 - membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0008270 - zinc ion binding, GO:0042742 - defense response to bacterium	TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress	PO:0009006 - shoot system 
17658	_		_	Ribosomal protein L12eI			1	D16046, D16065.		Os01g0191100	LOC_Os01g09510.4, LOC_Os01g09510.1				GO:0006414 - translational elongation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
17659	_		_	Ribosomal protein L12eI, Ribosomal protein A2			5	D15912. D21114.		Os05g0445500	LOC_Os05g37330.1				GO:0003735 - structural constituent of ribosome, GO:0006414 - translational elongation, GO:0005840 - ribosome		
17660	_		_	Ribosomal protein L12eII, Acidic ribosomal protein P2, Ribosomal protein rp21c			8	D16092. D29689. D29740.		Os08g0116500	LOC_Os08g02340.2, LOC_Os08g02340.1				GO:0003735 - structural constituent of ribosome, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0006414 - translational elongation, GO:0022626 - cytosolic ribosome		
17661	_	mt rpl13, mt RPL13	_	Ribosomal protein L13, mitochondrial ribosomal protein L13, mitochondrial RPL13			5	D15229.		Os05g0243300	LOC_Os05g15370.1				GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
17662	RPL17	RPL22, OsRPL17, OsRPL22	RIBOSOMAL PROTEIN L17	Ribosomal protein L17, Ribosomal protein L22	RIBOSOMAL PROTEIN L17		9	LOC_Os09g08430.1 D15463. RPL22 in Moin et al. 2016. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os09g0258600	LOC_Os09g08430.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0006412 - translation, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0005774 - vacuolar membrane, GO:0003735 - structural constituent of ribosome, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009006 - shoot system , PO:0009005 - root , PO:0020103 - flag leaf , PO:0009046 - flower 
17663	_		_	Ribosomal protein L18			3	D15568.		Os03g0341100	LOC_Os03g22180.1				GO:0005774 - vacuolar membrane, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0005886 - plasma membrane		
17664	_		_	Ribosomal protein L18a			1	D16015. Q943F3.		Os01g0752300	LOC_Os01g54870.1				GO:0005886 - plasma membrane, GO:0003735 - structural constituent of ribosome, GO:0009506 - plasmodesma, GO:0022625 - cytosolic large ribosomal subunit, GO:0005774 - vacuolar membrane, GO:0006412 - translation		
17665	_		_	Ribosomal protein L19			3	D15210.		Os03g0579300	LOC_Os03g38260.1				GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation		
17666	RPL19	RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e	RIBOSOMAL PROTEIN L19	Ribosomal protein L19e, Ribosomal protein L19	RIBOSOMAL PROTEIN L19		3	LOC_Os03g21940.1 D15389. D29721. RPL19.3 in Moin et al. 2016. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0337800	LOC_Os03g21940.1				GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0003735 - structural constituent of ribosome, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0003723 - RNA binding, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0020032 - plumule , PO:0020031 - radicle , PO:0009006 - shoot system , PO:0009005 - root , PO:0020103 - flag leaf , PO:0009046 - flower 
17667	_		_	Ribosomal protein L23			3	D16135.		Os03g0139100	LOC_Os03g04590.3, LOC_Os03g04590.2, LOC_Os03g04590.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0005730 - nucleolus		
17668	_		_	Ribosomal protein L23e			10	D15653.		Os10g0466700 	LOC_Os10g32920.1				GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit		
17669	_		_	Ribosomal protein HL25			4	D15362.		Os04g0501000 	LOC_Os04g42270.2, LOC_Os04g42270.1				GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0009644 - response to high light intensity, GO:0009409 - response to cold, GO:0016020 - membrane, GO:0000166 - nucleotide binding, GO:0006979 - response to oxidative stress, GO:0003735 - structural constituent of ribosome		
17670	_		_	Ribosomal protein L26			12	D16081.		Os12g0150100	LOC_Os12g05430.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0005730 - nucleolus, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005774 - vacuolar membrane, GO:0009409 - response to cold, GO:0005886 - plasma membrane		
17671	_		_	Ribosomal protein L27			10	D15960.		Os10g0564300	LOC_Os10g41470.1				GO:0005840 - ribosome, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17672	_		_	Ribosomal protein L27a.e			7	D16093.		Os07g0613200	LOC_Os07g42170.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009506 - plasmodesma, GO:0016020 - membrane		
17673	_		_	Ribosomal protein L30			1	D16076.		Os01g0812800	LOC_Os01g59730.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17674	RPL31	OsRPL31	RIBOSOMAL PROTEIN L31	Ribosomal protein L31	RIBOSOMAL PROTEIN L31		6	LOC_Os06g21480.1 D15690. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os06g0319700	LOC_Os06g21480.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0003735 - structural constituent of ribosome, GO:0005618 - cell wall, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0009506 - plasmodesma, GO:0022625 - cytosolic large ribosomal subunit	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress	PO:0020031 - radicle , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009006 - shoot system , PO:0009005 - root , PO:0020103 - flag leaf 
17675	_		_	Ribosomal protein L32			9	D15873.		Os09g0501100					GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
17676	_		_	Ribosomal protein L34			8	D16082.		Os08g0156800	LOC_Os08g06040.1				GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0009507 - chloroplast		
17677	_		_	Ribosomal protein L35			4	D16045.		Os04g0376000					GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0006412 - translation, GO:0009506 - plasmodesma, GO:0022625 - cytosolic large ribosomal subunit		
17678	_		_	Ribosomal protein L35a.e			2	D16059.		Os02g0785800	LOC_Os02g54470.2, LOC_Os02g54470.1				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
17679	_		_	Ribosomal protein L36a.e			7	D15384.		Os07g0450000 	LOC_Os07g26740.1				GO:0005840 - ribosome, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17680	_		_	Ribosomal protein L37a			5	D16030. Q5QM99. D29723.		Os05g0557000 	LOC_Os05g48320.2, LOC_Os05g48320.1				GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0046872 - metal ion binding, GO:0003735 - structural constituent of ribosome		
17681	_		_	Ribosomal protein L38			7	D15456. D29724.		Os07g0546700					GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17682	_		_	Ribosomal protein L39			6	D15349 (replaced by C98057). Q5SMI4.		Os06g0181566	LOC_Os06g08320.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17683	_		_	Ribosomal protein YL41			8	D22596. LOC_Os08g03579.		Os08g0129800	LOC_Os08g03579.2, LOC_Os08g03579.1				GO:0016021 - integral to membrane		
17684	_	surf-3	_	Ribosomal protein L7a, Ribosomal protein L7a.e, Transcription factor surf-3			9	D16041, D15699, D15164. P35685.		Os09g0507800 	LOC_Os09g32976.2, LOC_Os09g32976.1				GO:0005774 - vacuolar membrane, GO:0022625 - cytosolic large ribosomal subunit, GO:0042254 - ribosome biogenesis		
17685	_		_	Ribosomal protein S11			4	D16039.		Os04g0613600 	LOC_Os04g52361.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17686	_	RPS13, RPS13a, OsRPS13, OsRPS13a	_	Ribosomal protein S13, ribosomal protein small subunit 13, Ribosomal protein S13a, ribosomal protein small subunit 13a			8	LOC_Os08g02400. D16038. Q69UI2. RPS13a in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os08g0117200	LOC_Os08g02400.1				GO:0006412 - translation, GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide	TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
17687	_		_	Ribosomal protein S14			4	D16088.		Os04g0413600 					GO:0005730 - nucleolus, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17688	_		_	Ribosomal protein S16			12	D15748. Q0IQF7.		Os12g0124200 	LOC_Os12g03090.1				GO:0005618 - cell wall, GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0009506 - plasmodesma, GO:0016020 - membrane, GO:0005730 - nucleolus, GO:0006412 - translation, GO:0022627 - cytosolic small ribosomal subunit		
17689	_		_	Ribosomal protein S17			10	D16095.		Os10g0411800	LOC_Os10g27190.1				GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0022627 - cytosolic small ribosomal subunit, GO:0006414 - translational elongation, GO:0005886 - plasma membrane, GO:0000028 - ribosomal small subunit assembly		
17690	_		_	Ribosomal protein S20			3	D15484.		Os03g0249400	LOC_Os03g14530.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0022627 - cytosolic small ribosomal subunit, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0009506 - plasmodesma		
17691	RPS24	OsRPS24	RIBOSOMAL PROTEIN S24	Ribosomal protein S24, ribosomal protein small subunit 24	RIBOSOMAL PROTEIN S24		1	LOC_Os01g52490. D15135.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0723200	LOC_Os01g52490.1				GO:0042542 - response to hydrogen peroxide, GO:0022627 - cytosolic small ribosomal subunit, GO:0009737 - response to abscisic acid stimulus, GO:0005730 - nucleolus, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0000166 - nucleotide binding, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0009651 - response to salt stress, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast, GO:0005618 - cell wall	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress	
17692	_		_	Ribosomal protein S24			7	D15666.		Os07g0208000	LOC_Os07g10720.2, LOC_Os07g10720.1				GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
17693	RPS25	RPS25, RPS25a, OsRPS25, OsRPS25a	RIBOSOMAL PROTEIN S25	Ribosomal protein S25, ribosomal protein small subunit 25, Ribosomal protein S25a, ribosomal protein small subunit 25a	RIBOSOMAL PROTEIN S25		11	LOC_Os11g05562. D15113. Q9ARZ9. RPS25a in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os11g0153800	LOC_Os11g05562.1				GO:0009651 - response to salt stress, GO:0022627 - cytosolic small ribosomal subunit, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
17694	_	RPS23, OsRPS23	_	Ribosomal protein TS25, Ribosomal protein S23, ribosomal protein small subunit 23			3	LOC_Os03g60400. D15787. RPS23 in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0818400 	LOC_Os03g60400.1				GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance	
17695	RPS28 	OsRPS28	RIBOSOMAL PROTEIN S28	Ribosomal protein S28, ribosomal protein small subunit 28	RIBOSOMAL PROTEIN S28		10	LOC_Os10g27174. D16035.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os10g0411700	LOC_Os10g27174.1				GO:0006407 - rRNA export from nucleus, GO:0022627 - cytosolic small ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0006412 - translation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress	
17696	_		_	Ribosomal protein S3			7	D15286 (replaced by D22580).		Os07g0608500	LOC_Os07g41750.3, LOC_Os07g41750.2, LOC_Os07g41750.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0009506 - plasmodesma, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17697	_	RPS4, RPS19, OsRPS4, OsRPS19	_	Ribosomal protein S4, Ribosomal protein S19, ribosomal protein small subunit 4, ribosomal protein small subunit 19			3	LOC_Os03g31090. D15797. P40978. RPS19 in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0424500 	LOC_Os03g31090.1				GO:0050832 - defense response to fungus, GO:0042542 - response to hydrogen peroxide, GO:0005773 - vacuole, GO:0006412 - translation, GO:0009506 - plasmodesma, GO:0005730 - nucleolus, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0005618 - cell wall	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	
17698	_		_	Ribosomal protein S4X			2	D15827. P49398.		Os02g0105900	LOC_Os02g01560.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome, GO:0016020 - membrane, GO:0019843 - rRNA binding, GO:0006412 - translation		
17699	RPS5	RPS5A	RIBOSOMAL PROTEIN S5	Ribosomal protein S5, Ribosomal protein S5A, ribosomal protein small subunit 5, ribosomal protein small subunit 5a	RIBOSOMAL PROTEIN S5		11	LOC_Os11g29190. D15413. D29726. RPS5A in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os11g0482000	LOC_Os11g29190.5, LOC_Os11g29190.4, LOC_Os11g29190.3, LOC_Os11g29190.2, LOC_Os11g29190.1				GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009506 - plasmodesma, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0005618 - cell wall, GO:0042742 - defense response to bacterium, GO:0022627 - cytosolic small ribosomal subunit, GO:0009507 - chloroplast	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
17700	_	RPS6, RPS6a, RPS6A, OsRPS6, OsRPS6a	_	Ribosomal protein S6, Ribosomal protein S6a			3	LOC_Os03g27260. D15189. RPS6a in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0390000	LOC_Os03g27260.1				GO:0006364 - rRNA processing, GO:0005886 - plasma membrane, GO:0003735 - structural constituent of ribosome, GO:0042274 - ribosomal small subunit biogenesis, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009506 - plasmodesma, GO:0022627 - cytosolic small ribosomal subunit, GO:0040007 - growth, GO:0042542 - response to hydrogen peroxide	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
17701	_		_	Ribosomal protein S6e			7	D15194, D15504.		Os07g0622100	LOC_Os07g42950.1				GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0003735 - structural constituent of ribosome, GO:0006364 - rRNA processing, GO:0006412 - translation, GO:0022627 - cytosolic small ribosomal subunit, GO:0040007 - growth, GO:0042274 - ribosomal small subunit biogenesis		
17702	_		_	Ribosomal protein S7			5	D15643. Q8LJU5.		Os05g0346300	LOC_Os05g27940.1				GO:0003735 - structural constituent of ribosome, GO:0042274 - ribosomal small subunit biogenesis, GO:0022627 - cytosolic small ribosomal subunit, GO:0030686 - 90S preribosome, GO:0006364 - rRNA processing, GO:0032040 - small-subunit processome, GO:0006412 - translation		
17703	_	RPS3a	_	S-phase sepcific Cyc07 protein, ribosomal protein S3a, ribosomal protein small subunit 3a	_		2	LOC_Os02g18550. D15433.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0287000	LOC_Os02g18550.1				GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0006412 - translation, GO:0042742 - defense response to bacterium, GO:0022627 - cytosolic small ribosomal subunit, GO:0009737 - response to abscisic acid stimulus, GO:0003735 - structural constituent of ribosome	TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance	
17704	_		_	SCO1 protein			9	D15494. cytochrome oxidase.		Os09g0370200	LOC_Os09g20430.1				GO:0055070 - copper ion homeostasis		
17705	CPD2B	OsSCP10, SCP10	TYPE IIB CARBOXYPEPTIDASE	Serine carboxypeptidase II B chain, Serine carboxypeptidase 10	TYPE IIB CARBOXYPEPTIDASE		2	D23600. LOC_Os02g55130. OsSCP10 in Xu et al. 2015. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0794500	LOC_Os02g55130.5, LOC_Os02g55130.4, LOC_Os02g55130.3, LOC_Os02g55130.2, LOC_Os02g55130.1				GO:0004185 - serine-type carboxypeptidase activity, GO:0009742 - brassinosteroid mediated signaling		
17706	_		_	Serine/threonine-specific protein kinase			6	D16072.		Os06g0693000	LOC_Os06g47780.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
17707	RLCK268	OsRLCK268	RECEPTOR-LIKE CYTOPLASMIC KINASE 268	Receptor-like Cytoplasmic Kinase 268	RECEPTOR-LIKE CYTOPLASMIC KINASE 268		9	D23546 (replaced by C98382). Serine/threonine-specific protein kinase. LOC_Os09g19700.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0361100	LOC_Os09g19700.1				GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
17708	_		_	Sm-D nuclear antigen			4	D15099. LOC_Os04g39444. Os04g0470200 (in Rap1 (build3)).			LOC_Os04g39444				GO:0005774 - vacuolar membrane, GO:0005829 - cytosol		
17709	_		_	Small nuclear ribonucleoprotein E			8	D15561.		Os08g0151600 	LOC_Os08g05550.1						
17710	_	OsRAN2, RAN2	_	Spi-1 protein, Transforming protein (ras), Ran GTPase 2, Ras-like nuclear GTPase 2, Ras-related nuclear protein 2			5	D15656, D15119. AB015972. Q7GD79. GTP-binding protein homolog. Transforming protein (ras). small G-protein. RAN2 in Zhang et al. 2010, Chen et al. 2011 and Xu and Cai 2014.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0574500	LOC_Os05g49890.3, LOC_Os05g49890.2, LOC_Os05g49890.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0007264 - small GTPase mediated signal transduction, GO:0006913 - nucleocytoplasmic transport, GO:0003924 - GTPase activity, GO:0009737 - response to abscisic acid stimulus, GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0006886 - intracellular protein transport, GO:0006970 - response to osmotic stress, GO:0007067 - mitosis	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
17711	_		_	Succinate:CoA ligase (GDP-forming) alpha chain			7	D23652. Q6ZL94.		Os07g0577700	LOC_Os07g38970.1				GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0004775 - succinate-CoA ligase (ADP-forming) activity, GO:0048037 - cofactor binding, GO:0003878 - ATP citrate synthase activity, GO:0046686 - response to cadmium ion, GO:0006099 - tricarboxylic acid cycle, GO:0005618 - cell wall		
17712	_	Ub-CEP52-2	_	Ubiquitin, ubiquitin fused to CEP52 gene-2			9	D22504 (replaced by C97867). AB047856. P0CH35. Os09g0568400 is Cleaved into the following 2 chains: Ubiquitin & 60S ribosomal protein L40-2 (by UniProt). ubiquitin fused to ribosomal protein L40.		Os09g0568400	LOC_Os09g39500.2, LOC_Os09g39500.1				GO:0006412 - translation, GO:0005634 - nucleus, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
17713	UBL40-2	UbL40-2, OsUbL40-2	UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-2	Ubiquitin fusion protein, ubiquitin fusion ribosomal protein L40-2	UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-2		3	D15108.		Os03g0259500	LOC_Os03g15370.2, LOC_Os03g15370.1				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
17714	_	UbL40-1, OsUbL40-1	_	Ubiquitin 81-aa extension protein 1, ubiquitin fusion ribosomal protein L40-1			9	D15946.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0452700 	LOC_Os09g27930.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0005730 - nucleolus	TO:0000437 - male sterility	
17715	VALRS1	OsValRS1, ValRS1	VAL-TRNA SYNTHETASE 1	Valine:tRNA ligase, Val-tRNA Synthetase 1	VAL-TRNA SYNTHETASE 1		3	D22982. GO:0002161: aminoacyl-tRNA editing activity. LOC_Os03g48850.	 Biochemical character	Os03g0694900	LOC_Os03g48850.2, LOC_Os03g48850.1				GO:0005739 - mitochondrion, GO:0005829 - cytosol, GO:0009793 - embryonic development ending in seed dormancy, GO:0009507 - chloroplast, GO:0006438 - valyl-tRNA aminoacylation, GO:0004832 - valine-tRNA ligase activity, GO:0005524 - ATP binding		
17716	_		_	Actin			11	D23405.		Os11g0163100	LOC_Os11g06390.6, LOC_Os11g06390.5, LOC_Os11g06390.4, LOC_Os11g06390.3, LOC_Os11g06390.2, LOC_Os11g06390.1				GO:0009733 - response to auxin stimulus, GO:0009611 - response to wounding, GO:0048767 - root hair elongation, GO:0009845 - seed germination, GO:0005618 - cell wall, GO:0009941 - chloroplast envelope, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0005739 - mitochondrion, GO:0005829 - cytosol, GO:0005856 - cytoskeleton, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding, GO:0051301 - cell division, GO:0009416 - response to light stimulus		
17717	_		_	Elongation factor eEF-1 alpha chain			3	D16083.									
17718	_	AGL2	_	Floral homeotic protein AGL2				D15657.									
17719	GMPS1	OsGMPS1	GMP SYNTHETASE 1	GMP synthase (glutamine-hydrolyzing), GMP synthetase 1	GMP SYNTHETASE 1		8	D22898.	 Biochemical character	Os08g0326600	LOC_Os08g23730.1				GO:0006177 - GMP biosynthetic process, GO:0006529 - asparagine biosynthetic process, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity, GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity, GO:0016462 - pyrophosphatase activity		
17720	_		_	Histone H2A IV			12	D15670. Q2QPG9.		Os12g0530000	LOC_Os12g34510.1				GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly		
17721	_		_	Monoubiquitin-tail protein 2				D15239.									
17722	_		_	NADH dehydrogenase (ubiquinone) 78K			3	D16055.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0713400	LOC_Os03g50540.1				GO:0051536 - iron-sulfur cluster binding, GO:0050832 - defense response to fungus, GO:0005747 - mitochondrial respiratory chain complex I, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0009507 - chloroplast, GO:0006979 - response to oxidative stress, GO:0045333 - cellular respiration, GO:0042773 - ATP synthesis coupled electron transport, GO:0009055 - electron carrier activity	TO:0000074 - blast disease	
17723	_		_	Proteasome chain C8				D16042.	 Biochemical character								
17724	_		_	Ribosomal protein L21			3	D15340.	 Biochemical character	Os03g0141000	LOC_Os03g04750.1				GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0005730 - nucleolus, GO:0006412 - translation, GO:0009507 - chloroplast		
17725	_		_	Ribosomal protein L9				D15964.									
17726	_		_	Ribosomal protein S27			4	D15625.									
17727	_	Sec23c	_	SEC23 protein			11	D16031. transporter of secretory protein. a basic COPII coat machinery component.		Os11g0433500	LOC_Os11g24560.1				GO:0005829 - cytosol, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0030127 - COPII vesicle coat, GO:0006886 - intracellular protein transport		
17728	_		_	Transforming protein (myb)				D15468.									
17729	_	UbL40-4, OsUbL40-4	_	Ubiquitin/ribosomal protein S27a, ubiquitin fusion ribosomal protein L40-4			9	D15233.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0483400	LOC_Os09g31031.3, LOC_Os09g31031.2, LOC_Os09g31031.1				GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome	TO:0000437 - male sterility	
17731	_	AT320-1	_	resistance gene analog AT320-1			3	AB022166 (partial). a resistance gene analog (RGA) of Aichiasahi and Toride-1 (Japonica).							GO:0043531 - ADP binding		
17732	_	AT320-101	_	resistance gene analog AT320-101			9	AB022167 (partial). a resistance gene analog (RGA) of Aichiasahi and Toride-1 (Japonica).							GO:0043531 - ADP binding		
17733	_	A320-111	_	resistance gene analog A320-111			10	AB022168 (partial). a resistance gene analog (RGA) of Aichiasahi (Japonica).							GO:0043531 - ADP binding		
17734	_	T320-11	_	resistance gene analog T320-11			11	AB022170 (partial). a resistance gene analog (RGA) of Toride-1 (Japonica).							GO:0043531 - ADP binding		
17735	_	A320-4	_	resistance gene analog A320-4			3	AB022165 (partial). a resistance gene analog (RGA) of Aichi-asahi (Japonica).							GO:0043531 - ADP binding		
17736	_	A320-103	_	resistance gene analog A320-103			11	AB022169 (partial). a resistance gene analog (RGA) of Aichi-asahi (Japonica).							GO:0043531 - ADP binding		
17737	_	AT320-110	_	resistance gene analog AT320-110			1	AB022173 (partial). a resistance gene analog (RGA) of Aichiasahi and Toride-1 (Japonica).							GO:0043531 - ADP binding		
17738	_	A320-114	_	resistance gene analog A320-114			4	AB022171 (partial). a resistance gene analog (RGA) of Aichi-asahi (Japonica).							GO:0043531 - ADP binding		
17739	_	A1.1-4	_	resistance gene analog A1.1-4			5	AB022171 (partial). a resistance gene analog (RGA) of Aichi-asahi (Japonica).		Os05g0379500/Os05g0380300					GO:0043531 - ADP binding, GO:0006952 - defense response		
17740	_	T580-9	_	resistance gene analog T580-9				AB022172 (partial). a resistance gene analog (RGA) of Toride-1 (Japonica).							GO:0043531 - ADP binding		
17741	_		_	Acyl carrier protein II				D29690.									
17742	_		_	casein kinase 1-gamma			1	D29694.		Os01g0744300	LOC_Os01g54100.2, LOC_Os01g54100.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
17743	_	OsCKA2-2, CKA2-2	_	casein kinase II-alpha, CK2alpha subunit 2			7	D29696. GO:2001020: regulation of response to DNA damage stimulus.		Os07g0114400	LOC_Os07g02350.1				GO:0004674 - protein serine/threonine kinase activity, GO:0007623 - circadian rhythm, GO:0010225 - response to UV-C, GO:0010332 - response to gamma radiation, GO:0051726 - regulation of cell cycle, GO:0006325 - chromatin organization, GO:0005524 - ATP binding, GO:0006281 - DNA repair		
17744	_		_	Chaperonin 10			6	D29698.							GO:0005737 - cytoplasm, GO:0006457 - protein folding, GO:0005524 - ATP binding		
17745	_		_	GAmRNA			9	D29705. P49210.		Os09g0485900	LOC_Os09g31180.2, LOC_Os09g31180.1				GO:0009506 - plasmodesma, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0022625 - cytosolic large ribosomal subunit, GO:0005730 - nucleolus, GO:0005886 - plasma membrane, GO:0009955 - adaxial/abaxial pattern formation, GO:0006412 - translation, GO:0005774 - vacuolar membrane, GO:0009941 - chloroplast envelope		
17746	_		_	glutamate 1-semialdehyde-aminotransferase				D29706.									
17747	_		_	histone H2B			1	D29712. Q94JJ7.		Os01g0149400	LOC_Os01g05610.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0006334 - nucleosome assembly		
17748	_		_	hydroxyproline-rich glycoprotein			4	D29714.		Os04g0418800	LOC_Os04g34170.3, LOC_Os04g34170.1						
17749	_	OsSK13/OsGSK6, OsSK13, OsGSK6, SK13, GSK6	_	Protein kinase-alfalfa (MSK-3) homolog, GSK3/SHAGGY-Like Kinase 13, GSK3-like Kinase 6			5	LOC_Os05g04340. D50569. a GSK3/SHAGGY-like kinase clade I member.		Os05g0134000	LOC_Os05g04340.2, LOC_Os05g04340.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
17750	RPL26	RPL24b, OsRPL26, OsRPL24b	RIBOSOMAL PROTEIN L26	Ribosomal protein L26, Ribosomal protein L24b	RIBOSOMAL PROTEIN L26		1	LOC_Os01g04730.1 D50571. RPL24b in Moin et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0140500	LOC_Os01g04730.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0042273 - ribosomal large subunit biogenesis, GO:0009751 - response to salicylic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0009408 - response to heat, GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0006412 - translation	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009089 - endosperm , PO:0020031 - radicle , PO:0009006 - shoot system 
17751	_		_	Ribosomal protein L31			8	D29722.		Os08g0505300	LOC_Os08g39500.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
17752	_		_	Ribosomal protein L39			2	D29725. P51426, Q6KAJ8.		Os02g0797200					GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome		
17753	_		_	Ribosomal protein S11			4	D29727.		Os04g0613500					GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17754	_		_	Ribosomal protein S12			1	D29728. Os01g0834601 (in NCBI and UniProt). LOC_Os01g61814.		Os01g0834500	LOC_Os01g61814.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17755	_		_	Ribosomal protein S15			3	D29729.		Os03g0798600	LOC_Os03g58430.1				GO:0006412 - translation, GO:0022627 - cytosolic small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0005774 - vacuolar membrane, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0005730 - nucleolus		
17756	_		_	Ribosomal protein S19			3	D29730. P40978.		Os03g0424800	LOC_Os03g31134.1				GO:0005618 - cell wall, GO:0005773 - vacuole, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome, GO:0016020 - membrane, GO:0022627 - cytosolic small ribosomal subunit, GO:0009506 - plasmodesma		
17757	_		_	ORF109			Pt	D29699.									
17758	_		_	heat shock protein 90			9	D29710 (corresponds to Os09g0482100, Os09g0482610 or Os09g0482400).	 Tolerance and resistance - Stress tolerance								
17759	_		_	heat shock protein 82			9	D29709 (corresponds to Os09g0482610 or Os09g0482400).	 Tolerance and resistance - Stress tolerance								
17760	_		_	Polyubiquitin				D50572.									
17761	_		_	Signal recognition particle 7SRNA			10	D50572.									
17762	_		_	Ribosomal protein L41				D50573.									
17764	_	ORF64	_				Pt	X15901 (Japonica Group chloroplast genome).									
17765	_	ORF64	_				Pt	X15901 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome): BAD26863.	 Other						GO:0009507 - chloroplast		
17766	_	ORF109	_				Pt	X15901 (Japonica Group chloroplast genome). ORF within trnA intron. AP006728 (Oryza nivara chloroplast genome): BAD26836.							GO:0009507 - chloroplast		
17767	_	ORF109	_				Pt	X15901 (Japonica Group chloroplast genome). ORF within trnA intron. AP006728 (Oryza nivara chloroplast genome): BAD26856.							GO:0009507 - chloroplast		
17768	_	psb(J)	_				Pt		 Other								
17769	_	petG	_				Pt		 Other								
17770	_	psaJ	_				Pt		 Other								
17772	PSBZ	psbZ, lhbA, ORF62	_	photosystem II reaction center protein Z			Pt	LOC_Osp1g00190 (Ycf9). X15901: CAA34015 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). Q6ENI9.	 Biochemical character		LOC_Osp1g00190				GO:0009535 - chloroplast thylakoid membrane, GO:0009539 - photosystem II reaction center, GO:0009536 - plastid, GO:0015979 - photosynthesis, GO:0042549 - photosystem II stabilization, GO:0016021 - integral to membrane		
17776	RPS12	rps12	RIBOSOMAL PROTEIN S12	ribosomal protein S12	RIBOSOMAL PROTEIN S12		Pt	JN861109: AER12864, JN861110 (Indica Group chloroplast genome). 	 Other						GO:0006412 - translation, GO:0015935 - small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0009507 - chloroplast		
17777	_	orf46	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26825.							GO:0009507 - chloroplast		
17778	_	orf34	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26826.							GO:0009507 - chloroplast		
17779	_	orf42	_				Pt	JN861109 (Indica Group chloroplast genome): AER12866.							GO:0009507 - chloroplast		
17780	_	orf39	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26838.									
17781	_	orf39	_				Pt	AP006728: BAD26854 (Oryza nivara chloroplast genome).									
17782	_	orf42	_				Pt	JN861109, JN861110 (Indica Group chloroplast genome): AER12878.							GO:0009507 - chloroplast		
17783	_	orf48	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26864.									
17784	_	orf34	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26866.							GO:0009507 - chloroplast		
17785	_	orf46	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26867.							GO:0009507 - chloroplast		
17786	_	orf64	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26828.	 Other								
17787	CYP709C9	OsCYP709C9	CYTOCHROME P450 709C9	Cytochrome P450 709C9	CYTOCHROME P450 709C9		7	LOC_Os07g23570. a defense-related gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0418500 	LOC_Os07g23570.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
17788	ELF1	OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1	ERECT LEAF 1	ERECT LEAF1, erect leaf1, plant U-box-containing protein 75, U-box protein 75, Taihu Dwarf1, Dwarf and short grain 1		elf1, elf1-1, elf1-2, elf1-3, tud1, tud1-1, tud1-2, tud1-3, tud1-4, tud1-5, dsg1	3	An E3 ubiquitin ligase. TO:0000872: leaf erect. class V PUB protein (U-box only) in Zeng et al. 2008. class III PUB protein (Ubox + ARM repeats) in Sakamoto et al. 2013. OsPUB75 in Zeng et al. 2008. OsPUB31 in Sakamoto et al. 2013. LOC_Os03g13010. EST: CB636145, CB636146, C91823, CB684588, CB684587, AU094784, BI807109. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. TO:0020109: vascular bundle development trait. TO:0000822: leaf midvein anatomy and morphology trait.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Seed - Morphological traits	Os03g0232600	LOC_Os03g13010.1				GO:0051781 - positive regulation of cell division, GO:0004842 - ubiquitin-protein ligase activity, GO:0009742 - brassinosteroid mediated signaling, GO:0051512 - positive regulation of unidimensional cell growth, GO:0048366 - leaf development, GO:0009751 - response to salicylic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0008283 - cell proliferation, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0000151 - ubiquitin ligase complex	TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000472 - vascular bundle number, TO:0000135 - leaf length, TO:0000655 - leaf development trait, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000146 - seed length, TO:0000040 - panicle length, TO:0000734 - grain length, TO:0000227 - root length, TO:0002681 - leaf curling, TO:0000370 - leaf width, TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height	PO:0001050 - leaf development stage 
17789	_		_					a brassinosteroid-response gene. AJ238318.		Os02g0123600	LOC_Os02g03110.2, LOC_Os02g03110.1				GO:0003881 - CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity, GO:0016020 - membrane, GO:0008654 - phospholipid biosynthetic process		
17790	_	MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR3, MDHAR1, OsMDHAR1	_	cytosolic monodehydroascorbate reductase, monodehydroascorbate reductase			9	D85764. Q652L6. OsMDAR3 and OsMDHAR3 in Li et al. 2014, Huang et al. 2018. MDHAR1 in Huang et al. 2018. membrane-bound peroxisomal isoform (Li et al. 2014). GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0567300	LOC_Os09g39380.1				GO:0046686 - response to cadmium ion, GO:0050832 - defense response to fungus, GO:0016656 - monodehydroascorbate reductase (NADH) activity, GO:0050660 - FAD binding, GO:0048046 - apoplast, GO:0009570 - chloroplast stroma, GO:0009651 - response to salt stress, GO:0009610 - response to symbiotic fungus, GO:0010043 - response to zinc ion, GO:0032929 - negative regulation of superoxide release, GO:0045454 - cell redox homeostasis, GO:0005886 - plasma membrane, GO:0005782 - peroxisomal matrix, GO:0005829 - cytosol, GO:0009753 - response to jasmonic acid stimulus, GO:0006979 - response to oxidative stress, GO:0043903 - regulation of symbiosis, encompassing mutualism through parasitism	TO:0000074 - blast disease, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
17791	_	CHS, OsPKS06, OsPKS6, PKS06, PKS6	_	chalcone synthase, polyketide synthase 6			5	LOC_Os05g12210.	 Biochemical character,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os05g0212900	LOC_Os05g12210.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity, TO:0000707 - pericarp color	
17792	_	DIP3, XIP, OsHI-XIP	_	drought-induced protein 3, Xylanase inhibitor protein 2			5	a chitinase III protein. JQ218437. a Xylanase Inhibitor. LOC_Os05g15770. Xylanase inhibitor protein 2 in Sudo et al. 2008.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os05g0247100	LOC_Os05g15770.1				GO:0005783 - endoplasmic reticulum, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus, GO:0080027 - response to herbivore, GO:0002213 - defense response to insect, GO:0046688 - response to copper ion, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000021 - copper sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000424 - brown planthopper resistance, TO:0000454 - stem borer resistance, TO:0000172 - jasmonic acid sensitivity	
17793	CYP72A31		P-450 72A31	Cytochrome P450 72A31			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0602200	LOC_Os01g41800.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009635 - response to herbicide	TO:0000058 - herbicide sensitivity	
17794	CYP72A32	OsCYP72A32	P-450 72A32	Cytochrome P450 72A32			1	LOC_Os01g41810.	 Biochemical character	Os01g0602400	LOC_Os01g41810.1				GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
17795	CYP72A33		P-450 72A33	Cytochrome P450 72A33			1		 Biochemical character	Os01g0602500	LOC_Os01g41820.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
17796	_	OsPUB1, OsUFD2	_	ubiquitin fusion degradation protein-2, plant U-box-containing protein 1, U-box protein 1			3	class I PUB protein (UFD2 specific motif + U-box). LOC_Os03g31400. EST: CB639670, CB640908, CB619295, CB619296, AU078410, CB643846, CB643847, CB000450, CA764512, AU078411, CR281540, CF328714, CF328715.	 Biochemical character	Os03g0427900	LOC_Os03g31400.1				GO:0034450 - ubiquitin-ubiquitin ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0005829 - cytosol, GO:0006511 - ubiquitin-dependent protein catabolic process		
17797	_	OsPUB4	_	plant U-box-containing protein 4, U-box protein 4			2	class II PUB protein (U-box + ARM/HEAT). LOC_Os02g13960. Q6EUK7. EST: CB630469, CB630470, CB643247, CB643248, AU032329, CF325064, CK738435, BQ908529, AU173816.	 Biochemical character	Os02g0234300	LOC_Os02g13960.1				GO:0000151 - ubiquitin ligase complex, GO:0009817 - defense response to fungus, incompatible interaction, GO:0016567 - protein ubiquitination, GO:0004842 - ubiquitin-protein ligase activity		
17798	_	OsPUB5	_	plant U-box-containing protein 5, U-box protein 5			8	class II PUB protein (U-box + ARM/HEAT). LOC_Os08g32060.	 Biochemical character	Os08g0415600	LOC_Os08g32060.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17799	_	OsPUB6	_	plant U-box-containing protein 6, U-box protein 6			9	class II PUB protein (U-box + ARM/HEAT). LOC_Os09g21120.	 Biochemical character	Os09g0378700 	LOC_Os09g21120.1				GO:0016874 - ligase activity, GO:0004842 - ubiquitin-protein ligase activity		
17800	_	OsPUB7	_	plant U-box-containing protein 7, U-box protein 7			4	class II PUB protein (U-box + ARM/HEAT). LOC_Os04g28100. EST: CB650396, CB650395.	 Biochemical character	Os04g0348400	LOC_Os04g28100.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0071215 - cellular response to abscisic acid stimulus, GO:0000151 - ubiquitin ligase complex		
17801	_	OsPUB8	_	plant U-box-containing protein 8, U-box protein 8			4	class II PUB protein (U-box + ARM/HEAT). LOC_Os02g28720. EST:AU225089, CF310095, BI801229, AA754456, BI807368	 Biochemical character	Os02g0488600	LOC_Os02g28720.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17802	_	OsPUB9	_	plant U-box-containing protein 9, U-box protein 9			2	class II PUB protein (U-box + ARM/HEAT). LOC_Os02g49950. EST: CB672091, CB672092, CB634863, CB634864, AU097467, AU033197.	 Biochemical character	Os02g0732200	LOC_Os02g49950.1				GO:0010200 - response to chitin, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17803	_	OsPUB10	_	plant U-box-containing protein 10, U-box protein 10			3	class II PUB protein (U-box + ARM/HEAT). LOC_Os03g16824. EST: BE040196, CA758916, CB636819.	 Biochemical character	Os03g0275900	LOC_Os03g16824.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17804	_	OsPUB12	_	plant U-box-containing protein 12, U-box protein 12			6	class II PUB protein (U-box + ARM/HEAT). LOC_Os06g01304. Q5VRH9. AK067611. EST: CB629073, CB629075, CB661839, CB661840, CB647707, CB647708, CB663113, CB663114, CB661157, CB661158, CB640944, BM421775, AU070995.	 Biochemical character	Os06g0102700/Os06g0102750					GO:0004842 - ubiquitin-protein ligase activity, GO:0016567 - protein ubiquitination, GO:0000151 - ubiquitin ligase complex		
17805	_	OsPUB13, OsSTA182	_	plant U-box-containing protein 13, U-box protein 13			6	class II PUB protein (U-box + ARM/HEAT). LOC_Os06g51130. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0726900	LOC_Os06g51130.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		PO:0009066 - anther 
17806	_	OsPUB14	_	plant U-box-containing protein 14, U-box protein 14			8	class II PUB protein (U-box + ARM/HEAT). LOC_Os08g37570. EST: CA762420.	 Biochemical character	Os08g0481200	LOC_Os08g37570.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17807	_	OsPUB15, PUB15	_	plant U-box-containing protein 15, U-box protein 15			8	class II PUB protein (U-box + ARM/HEAT). LOC_Os08g01900. EST: AU069544, CB675602, CB675603, CB637298, CF304665, C26426, CB631051, AU092305, CA760274, CR281099. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character	Os08g0110500	LOC_Os08g01900.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17808	_	OsPUB16	_	plant U-box-containing protein 16, U-box protein 16			1	class II PUB protein (U-box + ARM/HEAT). LOC_Os01g66130. EST: CF326076.	 Biochemical character	Os01g0884400	LOC_Os01g66130.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17809	_	OsPUB17	_	plant U-box-containing protein 17, U-box protein 17			8	class II PUB protein (U-box + ARM/HEAT). LOC_Os08g32610. 	 Biochemical character	Os08g0421850	LOC_Os08g32610.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17810	_	OsPUB18	_	plant U-box-containing protein 18, U-box protein 18			9	class II PUB protein (U-box + ARM/HEAT). LOC_Os09g21740. EST: CB655398, CA756899, CB655399, D49059, D49048, AU070443, AU032876.	 Biochemical character	Os09g0386200	LOC_Os09g21740.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17811	_	OsPUB19	_	plant U-box-containing protein 19, U-box protein 19			6	class II PUB protein (U-box + ARM/HEAT). LOC_Os06g13090.	 Biochemical character	Os06g0238200	LOC_Os06g13090.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17812	_	OsPUB20	_	plant U-box-containing protein 20, U-box protein 20			6	class II PUB protein (U-box + ARM/HEAT). LOC_Os06g13080.	 Biochemical character	Os06g0238000	LOC_Os06g13080.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17813	_	OsPUB21	_	plant U-box-containing protein 21, U-box protein 21			2	class II PUB protein (U-box + ARM/HEAT). LOC_Os02g49520.	 Biochemical character	Os02g0727300	LOC_Os02g49520.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0016301 - kinase activity, GO:0000151 - ubiquitin ligase complex		
17814	_	OsPUB22	_	plant U-box-containing protein 22, U-box protein 22			6	class II PUB protein (U-box + ARM/HEAT). LOC_Os06g16410. EST: CB656843, CB656844, CB638682, CB638681, CB638683, CB654780, CB654781.	 Biochemical character	Os06g0275700	LOC_Os06g16410.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17815	_	OsPUB23	_	plant U-box-containing protein 23, U-box protein 23			12	class II PUB protein (U-box + ARM/HEAT). LOC_Os12g17900. EST: CB644678, CB644679, BE228945, CA765839.	 Biochemical character	Os12g0277400	LOC_Os12g17900.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17816	_	OsPUB24	_	plant U-box-containing protein 24, U-box protein 24			3	class II PUB protein (U-box + ARM/HEAT). LOC_Os03g45420. EST: AU101622, AU164585.	 Biochemical character	Os03g0657100	LOC_Os03g45420.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17817	_	OsPUB25	_	plant U-box-containing protein 25, U-box protein 25			12	class II PUB protein (U-box + ARM/HEAT). LOC_Os12g17880. EST: CB672899, CB672900, CF306503, CB640118, CB675872, CB675873, AU056255, CB632057, AU056256, BI809202.	 Biochemical character	Os12g0277000	LOC_Os12g17880.1				GO:0010150 - leaf senescence, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0010271 - regulation of chlorophyll catabolic process, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0090359 - negative regulation of abscisic acid biosynthetic process		
17818	_	OsPUB26	_	plant U-box-containing protein 26, U-box protein 26			3	class V PUB protein (U-box only). LOC_Os03g60140. EST: CI636688, CI660771, AC133007, CK047093, CI419583, CI436441, CI441137, CI440634, CI483651.	 Biochemical character	Os03g0816000	LOC_Os03g60140.1						
17819	_	OsPUB27	_	plant U-box-containing protein 27, U-box protein 27			4	class II PUB protein (U-box + ARM/HEAT). LOC_Os04g41250. EST: C72885, AU082230.	 Biochemical character	Os04g0489800	LOC_Os04g41250.1				GO:0000151 - ubiquitin ligase complex, GO:0009507 - chloroplast, GO:0004842 - ubiquitin-protein ligase activity		
17820	_	OsPUB28	_	plant U-box-containing protein 28, U-box protein 28			1	class II PUB protein (U-box + ARM/HEAT). LOC_Os01g67500. EST: CB679893, CB679894, AU094854, BX899859, C91848.	 Biochemical character	Os01g0901000	LOC_Os01g67500.3, LOC_Os01g67500.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17821	_	OsPUB29	_	plant U-box-containing protein 29, U-box protein 29			2	class II PUB protein (U-box + ARM/HEAT). LOC_Os02g47670. EST: CB659631, CB659632, AU056349, CA759692, AU056350.	 Biochemical character	Os02g0705600	LOC_Os02g47670.2, LOC_Os02g47670.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17822	_	OsPUB30	_	plant U-box-containing protein 30, U-box protein 30			8	class II PUB protein (U-box + ARM/HEAT). LOC_Os08g04470. EST: AU069933.	 Biochemical character	Os08g0139400	LOC_Os08g04470.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0008270 - zinc ion binding		
17823	_	OsPUB31	_	plant U-box-containing protein 31, U-box protein 31			1	class III PUB protein (U-box + GKL-box). LOC_Os01g64570.	 Biochemical character	Os01g0865700	LOC_Os01g64570.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0005829 - cytosol, GO:0051865 - protein autoubiquitination, GO:0002679 - respiratory burst during defense response, GO:0010200 - response to chitin, GO:0009414 - response to water deprivation		
17824	_	OsPUB32	_	plant U-box-containing protein 32, U-box protein 32			4	class III PUB protein (U-box + GKL-box). LOC_Os04g58920. EST: CB641925, CB641926, CB641964, CB641965.	 Biochemical character	Os04g0686000	LOC_Os04g58920.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17825	_	OsPUB33	_	plant U-box-containing protein 33, U-box protein 33			2	class III PUB protein (U-box + GKL-box). LOC_Os02g33590. EST: BI808859.	 Biochemical character	Os02g0539200	LOC_Os02g33590.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17826	_	OsPUB34	_	plant U-box-containing protein 34, U-box protein 34			4	class III PUB protein (U-box + GKL-box). LOC_Os04g34030.	 Biochemical character		LOC_Os04g34030				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17827	_	OsPUB35	_	plant U-box-containing protein 35, U-box protein 35			4	class III PUB protein (U-box + GKL-box). LOC_Os04g49970.	 Biochemical character	Os04g0589700	LOC_Os04g49970.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17828	_	OsPUB36	_	plant U-box-containing protein 36, U-box protein 36			2	class III PUB protein (U-box + GKL-box). LOC_Os02g46500.	 Biochemical character	Os02g0690600	LOC_Os02g46500.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17829	_	OsPUB37	_	plant U-box-containing protein 37, U-box protein 37			12	class III PUB protein (U-box + GKL-box). LOC_Os12g06410.	 Biochemical character	Os12g0161100	LOC_Os12g06410.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17830	_	OsPUB38	_	plant U-box-containing protein 38, U-box protein 38			4	class III PUB protein (U-box + GKL-box). LOC_Os04g35680.	 Biochemical character	Os04g0437300	LOC_Os04g35680.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0008270 - zinc ion binding, GO:0000151 - ubiquitin ligase complex		
17831	_	OsPUB39	_	plant U-box-containing protein 39, U-box protein 39			6	class III PUB protein (U-box + GKL-box). LOC_Os06g13870. EST: AU174669.	 Biochemical character	Os06g0248500	LOC_Os06g13870.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17832	_	OsPUB40	_	plant U-box-containing protein 40, U-box protein 40			2	class III PUB protein (U-box + GKL-box). LOC_Os02g50460. EST: AU100984, AU100985, AU063504, AU172336.	 Biochemical character	Os02g0738200	LOC_Os02g50460.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17833	_	OsPUB42	_	plant U-box-containing protein 42, U-box protein 42			10	class III PUB protein (U-box + GKL-box). LOC_Os10g03440.	 Biochemical character		LOC_Os10g03440				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17834	_	OsPUB43	_	plant U-box-containing protein 43, U-box protein 43			2	class III PUB protein (U-box + GKL-box). LOC_Os02g34410. EST: AU184395.	 Biochemical character	Os02g0548700	LOC_Os02g34410.1				GO:0010200 - response to chitin, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17835	_	OsPUB44	_	plant U-box-containing protein 44, U-box protein 44			5	class III PUB protein (U-box + GKL-box). LOC_Os05g36360. EST: CB669445, CB669446, CB650659, CB650660, CB645255, CB645256, CB650137, CB650138, CB649839, CB647557, BM421109, BI807625, BI808006, BQ908725, AI096168.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0439400	LOC_Os05g36360.1				GO:0000151 - ubiquitin ligase complex, GO:0002237 - response to molecule of bacterial origin, GO:0032494 - response to peptidoglycan, GO:0042742 - defense response to bacterium, GO:0004842 - ubiquitin-protein ligase activity	TO:0000175 - bacterial blight disease resistance	
17836	_	OsPUB45	_	plant U-box-containing protein 45, U-box protein 45			2	class III PUB protein (U-box + GKL-box). LOC_Os02g33680. 	 Biochemical character	Os02g0540700	LOC_Os02g33680.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17837	_	OsPUB46	_	plant U-box-containing protein 46, U-box protein 46			4	class III PUB protein (U-box + GKL-box). LOC_Os04g34140. EST: AU089778, AU089779, D49041.	 Biochemical character	Os04g0418500	LOC_Os04g34140.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17838	RLCK207	OsPUB47, OsRLCK207	RECEPTOR-LIKE CYTOPLASMIC KINASE 207	plant U-box-containing protein 47, U-box protein 47, Receptor-like Cytoplasmic Kinase 207	RECEPTOR-LIKE CYTOPLASMIC KINASE 207		6	class IV PUB protein (Kinase + U-box). LOC_Os06g37620. EST: CB627135, CB668863, TC257914.	 Biochemical character,  Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os06g0574200	LOC_Os06g37620.1				GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0000151 - ubiquitin ligase complex, GO:0004674 - protein serine/threonine kinase activity, GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding, GO:0006950 - response to stress	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
17839	RLCK69	OsPUB48, OsRLCK69	RECEPTOR-LIKE CYTOPLASMIC KINASE 69	plant U-box-containing protein 48, U-box protein 48, Receptor-like Cytoplasmic Kinase 69	RECEPTOR-LIKE CYTOPLASMIC KINASE 69		2	class IV PUB protein (Kinase + U-box). LOC_Os02g12670. EST: C73105, CB096600, CR280370, CB647037, AU075377.	 Biochemical character,  Reproductive organ - panicle,  Tolerance and resistance	Os02g0218600	LOC_Os02g12670.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006950 - response to stress, GO:0000151 - ubiquitin ligase complex, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0004842 - ubiquitin-protein ligase activity	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
17840	RLCK307	OsPUB49, OsRLCK307	RECEPTOR-LIKE CYTOPLASMIC KINASE 307	plant U-box-containing protein 49, U-box protein 49, Receptor-like Cytoplasmic Kinase 307	RECEPTOR-LIKE CYTOPLASMIC KINASE 307		10	class IV PUB protein (Kinase + U-box). LOC_Os10g41220. EST: AU094827, CB672905.	 Biochemical character,  Reproductive organ - panicle,  Seed	Os10g0561500	LOC_Os10g41220.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
17841	RLCK93	OsPUB50, OsRLCK93	RECEPTOR-LIKE CYTOPLASMIC KINASE 93	plant U-box-containing protein 50, U-box protein 50, Receptor-like Cytoplasmic Kinase 93	RECEPTOR-LIKE CYTOPLASMIC KINASE 93		3	class IV PUB protein (Kinase + U-box). LOC_Os03g01160. EST: AU222811.	 Biochemical character,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance	Os03g0101200	LOC_Os03g01160.2				GO:0000151 - ubiquitin ligase complex, GO:0004674 - protein serine/threonine kinase activity, GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
17842	RLCK194	OsPUB51, OsRLCK194	RECEPTOR-LIKE CYTOPLASMIC KINASE 194	plant U-box-containing protein 51, U-box protein 51, Receptor-like Cytoplasmic Kinase 194	RECEPTOR-LIKE CYTOPLASMIC KINASE 194		6	class IV PUB protein (Kinase + U-box). LOC_Os06g04880. EST: CB634275, CB634276, CB663207, CB663208, CB661735, CB661736, CB663242, CB676242.	 Biochemical character,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0140800	LOC_Os06g04880.1				GO:0000151 - ubiquitin ligase complex, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0006950 - response to stress, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004842 - ubiquitin-protein ligase activity, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
17843	RLCK280	OsPUB52, OsRLCK280	RECEPTOR-LIKE CYTOPLASMIC KINASE 280	plant U-box-containing protein 52, U-box protein 52, Receptor-like Cytoplasmic Kinase 280	RECEPTOR-LIKE CYTOPLASMIC KINASE 280		9	class IV PUB protein (Kinase + U-box). LOC_Os09g39620. EST: C73201.	 Biochemical character,  Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os09g0569800	LOC_Os09g39620.1				GO:0004674 - protein serine/threonine kinase activity, GO:0000151 - ubiquitin ligase complex, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0004842 - ubiquitin-protein ligase activity	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
17844	RLCK305	OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1	RECEPTOR-LIKE CYTOPLASMIC KINASE 305	plant U-box-containing protein 53, U-box protein 53, Receptor-like Cytoplasmic Kinase 305, Mediator 2_1	RECEPTOR-LIKE CYTOPLASMIC KINASE 305		10	class IV PUB protein (Kinase + U-box). LOC_Os10g40060. EST: D48628, CB666071, CB666072, BP184834.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0548300	LOC_Os10g40060.4, LOC_Os10g40060.3, LOC_Os10g40060.2, LOC_Os10g40060.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0000151 - ubiquitin ligase complex, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	
17845	RLCK306	OsPUB54, OsRLCK306	RECEPTOR-LIKE CYTOPLASMIC KINASE 306	plant U-box-containing protein 54, U-box protein 54, Receptor-like Cytoplasmic Kinase 306	RECEPTOR-LIKE CYTOPLASMIC KINASE 306		10	class IV PUB protein (Kinase + U-box). LOC_Os10g40100. EST: CB674756, BM421191.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0548700	LOC_Os10g40100.2, LOC_Os10g40100.1				GO:0004674 - protein serine/threonine kinase activity, GO:0000151 - ubiquitin ligase complex, GO:0009414 - response to water deprivation, GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
17846	RLCK81	OsPUB55, OsRLCK81	RECEPTOR-LIKE CYTOPLASMIC KINASE 81	plant U-box-containing protein 55, U-box protein 55, Receptor-like Cytoplasmic Kinase 81	RECEPTOR-LIKE CYTOPLASMIC KINASE 81		2	class IV PUB protein (Kinase + U-box). LOC_Os02g44610. BAD27770.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0665800	LOC_Os02g44610.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0042742 - defense response to bacterium, GO:0000151 - ubiquitin ligase complex, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance	
17847	RLCK281	OsPUB56, OsRLCK281	RECEPTOR-LIKE CYTOPLASMIC KINASE 281	plant U-box-containing protein 56, U-box protein 56, Receptor-like Cytoplasmic Kinase 281	RECEPTOR-LIKE CYTOPLASMIC KINASE 281		9	class IV PUB protein (Kinase + U-box). LOC_Os09g39640. EST: CB631963, CF316548, CF316549, CA882843.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os09g0570000	LOC_Os09g39640.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0002213 - defense response to insect, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity	TO:0000261 - insect damage resistance	
17848	RLCK112	OsPUB57, OsRLCK112	RECEPTOR-LIKE CYTOPLASMIC KINASE 112	plant U-box-containing protein 57, U-box protein 57, Receptor-like Cytoplasmic Kinase 112	RECEPTOR-LIKE CYTOPLASMIC KINASE 112		3	class IV PUB protein (Kinase + U-box). LOC_Os03g31070. Q0DR28.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os03g0424200	LOC_Os03g31070.2, LOC_Os03g31070.1				GO:0005524 - ATP binding, GO:0000151 - ubiquitin ligase complex, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0004842 - ubiquitin-protein ligase activity, GO:0009611 - response to wounding, GO:0016567 - protein ubiquitination, GO:0016874 - ligase activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
17849	_	OsPUB58	_	plant U-box-containing protein 58, U-box protein 58			10	class IV PUB protein (Kinase + U-box). LOC_Os10g40120. 	 Biochemical character	Os10g0548850	LOC_Os10g40120.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17850	RLCK111	OsPUB59, OsRLCK111	RECEPTOR-LIKE CYTOPLASMIC KINASE 111	plant U-box-containing protein 59, U-box protein 59, Receptor-like Cytoplasmic Kinase 111	RECEPTOR-LIKE CYTOPLASMIC KINASE 111		3	class IV PUB protein (Kinase + U-box). LOC_Os03g31000. 	 Biochemical character	Os03g0423700	LOC_Os03g31000.1				GO:0005524 - ATP binding, GO:0000151 - ubiquitin ligase complex, GO:0004713 - protein tyrosine kinase activity, GO:0004842 - ubiquitin-protein ligase activity		
17851	_	OsPUB60	_	plant U-box-containing protein 60, U-box protein 60			2	class IV PUB protein (Kinase + U-box). LOC_Os02g44599. 	 Biochemical character	Os02g0665400	LOC_Os02g44599.4, LOC_Os02g44599.3, LOC_Os02g44599.2, LOC_Os02g44599.1						
17852	RLCK285	OsPUB61, OsRLCK285	RECEPTOR-LIKE CYTOPLASMIC KINASE 285	plant U-box-containing protein 61, U-box protein 61, Receptor-like Cytoplasmic Kinase 285	RECEPTOR-LIKE CYTOPLASMIC KINASE 285		10	class IV PUB protein (Kinase + U-box). LOC_Os10g01060. EST: CB648412.	 Biochemical character,  Reproductive organ - panicle,  Seed	Os10g0100500	LOC_Os10g01060.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0000151 - ubiquitin ligase complex, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
17853	RLCK91	OsPUB62, OsRLCK91	RECEPTOR-LIKE CYTOPLASMIC KINASE 91	plant U-box-containing protein 62, U-box protein 62, Receptor-like Cytoplasmic Kinase 91	RECEPTOR-LIKE CYTOPLASMIC KINASE 91		2	class IV PUB protein (Kinase + U-box). LOC_Os02g57700. EST: BQ908820.	 Biochemical character	Os02g0822900	LOC_Os02g57700.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17854	_	OsPUB63	_	plant U-box-containing protein 63, U-box protein 63			6	class VII PUB protein (TPR + U-box). LOC_Os06g06490. Q2RAD9. EST: CA758128, CF294635, CF294636, CF306389, CF305746, CF303031, CF303481, C73147, CA765281, AU075414.	 Biochemical character	Os06g0159900	LOC_Os06g06490.3, LOC_Os06g06490.2, LOC_Os06g06490.1				GO:0006334 - nucleosome assembly, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0000786 - nucleosome		
17855	_	OsPUB64, PUB64, OsHOP1, HOP1	_	plant U-box-containing protein 64, U-box protein 64, Hsp70-Hsp90 organizing protein 1			6	class VII PUB protein (TPR + U-box). EST: CB669618, CB669619, CB666007, CB666008, CB655998, CB655999, CB656035, CB656036, AU068890, CB651921, CB651922, CB662541, CB662542, CB659153, CB659154, CB673778, CB649572, CB672550, CA762292, CA763973, AU068891, BI807157, AU078129, CA999626, C20397, C50849.	 Biochemical character	Os06g0159600	LOC_Os06g06470.1				GO:0009751 - response to salicylic acid stimulus, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17856	_	OsPUB65	_	plant U-box-containing protein 65, U-box protein 65			6	class VII PUB protein (TPR + U-box). LOC_Os06g06450. 	 Biochemical character	Os06g0159400	LOC_Os06g06450.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17857	_	OsPUB66	_	plant U-box-containing protein 66, U-box protein 66			5	class VII PUB protein (TPR + U-box). LOC_Os05g01460. 	 Biochemical character	Os05g0104900	LOC_Os05g01460.5, LOC_Os05g01460.3, LOC_Os05g01460.2, LOC_Os05g01460.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17858	_	OsPUB67	_	plant U-box-containing protein 67, U-box protein 67			10	class VII PUB protein (TPR + U-box). LOC_Os10g40490. EST: CA759007, CA759008.	 Biochemical character	Os10g0552400	LOC_Os10g40490.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17859	_	OsPUB68	_	plant U-box-containing protein 68, U-box protein 68			8	class VII PUB protein (TPR + U-box). LOC_Os08g02140. EST: AU081544.	 Biochemical character	Os08g0113300	LOC_Os08g02140.3, LOC_Os08g02140.2				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17860	_	OsPUB69	_	plant U-box-containing protein 69, U-box protein 69			8	class V PUB protein (U-box only). LOC_Os08g13780. 	 Biochemical character	Os08g0235400	LOC_Os08g13780.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17861	RLCK197	OsPUB70, PUB70, OsRLCK197	RECEPTOR-LIKE CYTOPLASMIC KINASE 197	plant U-box-containing protein 70, U-box protein 70, Receptor-like Cytoplasmic Kinase 197	RECEPTOR-LIKE CYTOPLASMIC KINASE 197	ospub70	6	class VIII PUB protein (TPR + Kinase + U-box). LOC_Os06g06760. EST: CB684359, CB684360, CB661779, BI812595, BI811980. U-box type ubiquitin E3 ligase.	 Biochemical character,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0163000	LOC_Os06g06760.3, LOC_Os06g06760.2, LOC_Os06g06760.1				GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0004842 - ubiquitin-protein ligase activity, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0000151 - ubiquitin ligase complex	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
17862	_	OsPUB73	_	plant U-box-containing protein 73, U-box protein 73			2	class V PUB protein (U-box only). LOC_Os02g28870. Q6K762.	 Biochemical character	Os02g0490000	LOC_Os02g28870.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0016567 - protein ubiquitination, GO:0000151 - ubiquitin ligase complex		
17863	_	OsPUB74	_	plant U-box-containing protein 74, U-box protein 74			6	class V PUB protein (U-box only). LOC_Os06g28590 . EST: CB633820, CB633821, CA305715.	 Biochemical character	Os06g0480000	LOC_Os06g28590.3, LOC_Os06g28590.2, LOC_Os06g28590.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17864	_	OsPUB76	_	plant U-box-containing protein 76, U-box protein 76			4	class V PUB protein (U-box only). LOC_Os04g30470. 	 Biochemical character	Os04g0373200	LOC_Os04g30470.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17865	_	OsPUB77, OsEnS-73	_	plant U-box-containing protein 77, U-box protein 77, endosperm-specific gene 73			4	class V PUB protein (U-box only). LOC_Os04g49500. 	 Biochemical character	Os04g0584500	LOC_Os04g49500.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17866	FLO6	SIP4	FLOURY ENDOSPERM 6	FLOURY ENDOSPERM6, SKIP interacting protein 4, SKIPa-interacting protein 4, SKIPa-interacting protein 4		flo6	3	a CBM48 domain-containing protein. FLO6 is a novel factor required for starch biosynthesis and compound granule formation in rice seeds (Peng et al. 2014). EU368694. LOC_Os03g48170. 	 Seed - Physiological traits - Storage substances	Os03g0686900	LOC_Os03g48170.1				GO:0019252 - starch biosynthetic process, GO:0009536 - plastid, GO:0007165 - signal transduction	TO:0000696 - starch content	
17867	_	RBS1, Rbs1	_	RNA-binding and SPIN1-interacting 1, RNA-binding and SPIN1-interacting1			11	LOC_Os11g14430. Component involved in SPL11/SPIN1-mediated flowering.	 Reproductive organ - Heading date	Os11g0250000	LOC_Os11g14430.2, LOC_Os11g14430.1				GO:0003676 - nucleic acid binding, GO:0003723 - RNA binding, GO:2000028 - regulation of photoperiodism, flowering, GO:0000166 - nucleotide binding	TO:0002616 - flowering time	
17868	_	OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 5, pyrabactin resistance-like 5, PYR1-like 11, pyrabactin resistance 1-like 11			5	cytosolic ABA receptor. LOC_Os05g12260. Q6I5C3. TO:0000905: seed yield. OsPYL11 in He et al. 2014, Miao et al. 2018. GO:0038023: signaling receptor activity. GO:1905183: negative regulation of protein serine/threonine phosphatase activity. GO:0080163: regulation of protein serine/threonine phosphatase activity. GO:0090351: seedling development.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os05g0213500	LOC_Os05g12260.1				GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009414 - response to water deprivation, GO:0010427 - abscisic acid binding, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009845 - seed germination, GO:0006970 - response to osmotic stress, GO:0009738 - abscisic acid mediated signaling, GO:0009724 - detection of abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height	PO:0025034 - leaf 
17869	_	OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 1, pyrabactin resistance-like 1, PYR1-like 4, pyrabactin resistance 1-like 4		pyl4	1	cytosolic ABA receptor. LOC_Os01g61210. OsPYL4 in He et al. 2014, Miao et al. 2018. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os01g0827800	LOC_Os01g61210.1				GO:0004872 - receptor activity, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0045926 - negative regulation of growth, GO:0005737 - cytoplasm, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0005829 - cytosol, GO:0010427 - abscisic acid binding	TO:0000615 - abscisic acid sensitivity	PO:0009005 - root 
17870	_	OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 2, pyrabactin resistance-like 2, PYR1-like 3, pyrabactin resistance 1-like 3		pyl3	2	cytosolic ABA receptor. LOC_Os02g13330. OsPYL3 in He et al. 2014, Miao et al. 2018. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.	 Tolerance and resistance - Stress tolerance	Os02g0226801	LOC_Os02g13330.1				GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0009724 - detection of abscisic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0010427 - abscisic acid binding, GO:0005737 - cytoplasm	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
17871	_	OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 3, pyrabactin resistance-like 3, PYR1-like 10, pyrabactin resistance 1-like 10		pyl10	2	cytosolic ABA receptor. LOC_Os02g15640. Q6EN42. FN556370. OsPYL10 in He et al. 2014, Miao et al. 2018. OsRCAR1 in Wang et al. 2017. GO:0038023: signaling receptor activity. GO:1905183: negative regulation of protein serine/threonine phosphatase activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.	 Tolerance and resistance - Stress tolerance	Os02g0255500	LOC_Os02g15640.1				GO:0009737 - response to abscisic acid stimulus, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0010427 - abscisic acid binding, GO:0009409 - response to cold, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009408 - response to heat	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf 
17872	_	OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 4, pyrabactin resistance-like 4, PYR1-like 6, pyrabactin resistance 1-like 6		pyl6	3	cytosolic ABA receptor. OsPYL6 in He et al. 2014, Miao et al. 2018. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os03g0297600	LOC_Os03g18600.1				GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0010427 - abscisic acid binding, GO:2000033 - regulation of seed dormancy, GO:0045926 - negative regulation of growth, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0005829 - cytosol, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0000253 - seed dormancy, TO:0006001 - salt tolerance	
17873	_	OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 6, pyrabactin resistance-like 6, PYR1-like 5, pyrabactin resistance 1-like 5		pyl5	5	cytosolic ABA receptor. LOC_Os05g39580. OsPYL5 in He et al. 2014, Miao et al. 2018. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os05g0473000	LOC_Os05g39580.1				GO:0010427 - abscisic acid binding, GO:0009738 - abscisic acid mediated signaling, GO:0005737 - cytoplasm, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0005829 - cytosol, GO:0005634 - nucleus		
17874	_	OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 7, endosperm-specific gene 90, pyrabactin resistance-like 7, PYR1-like 8, pyrabactin resistance 1-like 8		pyl8	6	cytosolic ABA receptor. LOC_Os06g33640. OsPYL8 in He et al. 2014, Miao et al. 2018. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os06g0527800	LOC_Os06g33640.2, LOC_Os06g33640.1				GO:0009738 - abscisic acid mediated signaling, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0010427 - abscisic acid binding		PO:0009009 - plant embryo 
17875	_	OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 8, pyrabactin resistance-like 8, PYR1-like 9, pyrabactin resistance 1-like 9		pyl9	6	cytosolic ABA receptor. LOC_Os06g33690. OsPYL9 in He et al. 2014, Miao et al. 2018. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os06g0528300	LOC_Os06g33690.1				GO:0005829 - cytosol, GO:0010427 - abscisic acid binding, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009738 - abscisic acid mediated signaling, GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0009009 - plant embryo 
17876	_	OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 9, pyrabactin resistance-like 9, PYR1-like 2, pyrabactin resistance 1-like 2		pyl2	6	cytosolic ABA receptor. LOC_Os06g36670. Q5Z8S0. OsPYL2 in He et al. 2014, Miao et al. 2018.	 Tolerance and resistance - Stress tolerance	Os06g0562200	LOC_Os06g36670.1				GO:0010427 - abscisic acid binding, GO:0009845 - seed germination, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0042803 - protein homodimerization activity	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
17877	_	OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1	_	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 10, pyrabactin resistance-like 10, PYR1-like 1, pyrabactin resistance 1-like 1		pyl1	10	cytosolic ABA receptor. LOC_Os10g42280. Q7XBY6. GO:0080163: regulation of protein serine/threonine phosphatase activity. OsPYL1 in He et al. 2014, Miao et al. 2018. GO:0038023: signaling receptor activity. GO:1905183: negative regulation of protein serine/threonine phosphatase activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.	 Seed - Physiological traits - Dormancy	Os10g0573400	LOC_Os10g42280.1				GO:0010427 - abscisic acid binding, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0048623 - seed germination on parent plant, GO:0004872 - receptor activity, GO:0005737 - cytoplasm, GO:0009738 - abscisic acid mediated signaling, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0042803 - protein homodimerization activity, GO:2000033 - regulation of seed dormancy, GO:0045926 - negative regulation of growth	TO:0000253 - seed dormancy	
17878	_	OsPP2C49, PP2C49, OsPP76	_	protein phosphatase 2C49, protein phosphatase 2C 49, protein phosphatase 76		ospp2c49	5	LOC_Os05g38290. Q65XG6. an ABI1 homolog.		Os05g0457200	LOC_Os05g38290.2, LOC_Os05g38290.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0009788 - negative regulation of abscisic acid mediated signaling	TO:0000615 - abscisic acid sensitivity	
17879	_	OsPP2C30, PP2C30, OsPP48, PP48	_	protein phosphatase 2C30, protein phosphatase 2C 30, protein phosphatase 48			3	LOC_Os03g16170. Q84JI0. GO:1902039: negative regulation of seed dormancy process.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os03g0268600	LOC_Os03g16170.2, LOC_Os03g16170.1				GO:0005634 - nucleus, GO:0005794 - Golgi apparatus, GO:0006470 - protein amino acid dephosphorylation, GO:0009409 - response to cold, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0010030 - positive regulation of seed germination, GO:0005829 - cytosol, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0033106 - cis-Golgi network membrane, GO:0010118 - stomatal movement, GO:0048838 - release of seed from dormancy, GO:0046688 - response to copper ion, GO:0010360 - negative regulation of anion channel activity, GO:0010119 - regulation of stomatal movement, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009658 - chloroplast organization	TO:0000615 - abscisic acid sensitivity, TO:0000021 - copper sensitivity	
17880	_	OsPP2C01, PP2C01, OsPP2C1, PP2C1, OsPP1, OsPBCP, PBCP	_	protein phosphatase 2C01, protein phosphatase 2C 01, protein phosphatase 2C1, protein phosphatase 2C 1, protein phosphatase 1, PHOTOSYSTEM II CORE PHOSPHATASE			1	Q942P9. GO:0071482: cellular response to light stimulus. GO:0035970: thylakoid membrane organization. GO:0035970: peptidyl-threonine dephosphorylation. the rice ortholog of AtPBCP	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0164600	LOC_Os01g07090.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0009570 - chloroplast stroma, GO:0046872 - metal ion binding, GO:0009644 - response to high light intensity, GO:0042549 - photosystem II stabilization	TO:0000075 - light sensitivity	
17881	_	OsPP2C02, PP2C02, OsPP2C2, PP2C2, OsPP2	_	protein phosphatase 2C02, protein phosphatase 2C 02, protein phosphatase 2C2, protein phosphatase 2C 2, protein phosphatase 2			1	LOC_Os01g19130. Q9FYN7.		Os01g0295700	LOC_Os01g19130.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17882	_	OsPP2C03, PP2C03, OsPP2C3, PP2C3, OsPP7	_	protein phosphatase 2C03, protein phosphatase 2C 03, protein phosphatase 2C3, protein phosphatase 2C 3, protein phosphatase 7			1	LOC_Os01g32964. Q0JMD4.		Os01g0513100	LOC_Os01g32964.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17883	_	OsPP2C04, PP2C04, OsPP2C4, PP2C4, OsPP8	_	protein phosphatase 2C04, protein phosphatase 2C 04, protein phosphatase 2C4, protein phosphatase 2C 4, protein phosphatase 8			1	LOC_Os01g36080. Q5JJY4.		Os01g0541900	LOC_Os01g36080.4, LOC_Os01g36080.3, LOC_Os01g36080.2, LOC_Os01g36080.1				GO:0004674 - protein serine/threonine kinase activity, GO:0004721 - phosphoprotein phosphatase activity, GO:0005524 - ATP binding, GO:0046872 - metal ion binding		
17884	_	OsPP2C05, PP2C05, OsPP2C5, PP2C5, OsPP9, PPH1, TAP38, PPH1/TAP38	_	protein phosphatase 2C05, protein phosphatase 2C 05, protein phosphatase 2C5, protein phosphatase 2C 5, protein phosphatase 9		pph1, pph1/tap38, tap38	1	LOC_Os01g37130. Q5JKN1.	 Biochemical character	Os01g0552300	LOC_Os01g37130.2, LOC_Os01g37130.1				GO:0006470 - protein amino acid dephosphorylation, GO:0009570 - chloroplast stroma, GO:0005730 - nucleolus, GO:0080005 - photosystem stoichiometry adjustment, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0009767 - photosynthetic electron transport chain, GO:0009579 - thylakoid		
17885	_	OsPP2C07, PP2C07, OsPP2C7, PP2C7, OsPP11, PP11	_	protein phosphatase 2C07, protein phosphatase 2C 07, protein phosphatase 2C7, protein phosphatase 2C 7, protein phosphatase 11			1	LOC_Os01g43100. Q0JL75.	 Tolerance and resistance - Stress tolerance	Os01g0618200	LOC_Os01g43100.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0009409 - response to cold, GO:0006470 - protein amino acid dephosphorylation	TO:0000303 - cold tolerance	
17886	_	OsPP2C08, PP2C08, OsPP2C8, PP2C8, OsPP12	_	protein phosphatase 2C08, protein phosphatase 2C 08, protein phosphatase 2C8, protein phosphatase 2C 8, protein phosphatase 12			1	LOC_Os01g46760. Q5SN75.		Os01g0656200	LOC_Os01g46760.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17887	_	OsPP2C10, PP2C10, OsPP18	_	protein phosphatase 2C10, protein phosphatase 2C 10, Protein Phosphatase18		ospp18	2	LOC_Os02g05630. Q67UX7. OsPP18 in You et al. 2014. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os02g0149800	LOC_Os02g05630.4, LOC_Os02g05630.3, LOC_Os02g05630.2, LOC_Os02g05630.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0006470 - protein amino acid dephosphorylation, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006970 - response to osmotic stress, GO:0006979 - response to oxidative stress, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
17888	_	OsPP2C11, PP2C11, OsPP19	_	protein phosphatase 2C11, protein phosphatase 2C 11, protein phosphatase 19			2	LOC_Os02g08364. Q6ETK3.		Os02g0180000	LOC_Os02g08364.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0006470 - protein amino acid dephosphorylation		
17889	_	OsPP2C12, PP2C12, OsPP21	_	protein phosphatase 2C12, protein phosphatase 2C 12, protein phosphatase 21			2	LOC_Os02g13100. Q6Z8B9.		Os02g0224100	LOC_Os02g13100.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17890	_	OsPP2C14, PP2C14, OsPP24	_	protein phosphatase 2C14, protein phosphatase 2C 14, protein phosphatase 24			2	LOC_Os02g27220. Q6K6N7.		Os02g0471500	LOC_Os02g27220.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17891	_	OsPP2C15, PP2C15, OsPP25	_	protein phosphatase 2C15, protein phosphatase 2C 15, protein phosphatase 25			2	LOC_Os02g35910. Q6YTI2.		Os02g0567200	LOC_Os02g35910.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005829 - cytosol		
17892	_	OsPP2C16, PP2C16, OsPP26	_	protein phosphatase 2C16, protein phosphatase 2C 16, protein phosphatase 26			2	LOC_Os02g38580. Q6K1U4.		Os02g0599150	LOC_Os02g38580.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17893	_	OsPP2C17, PP2C17, OsPP27	_	protein phosphatase 2C17, protein phosphatase 2C 17, protein phosphatase 27			2	LOC_Os02g38690. Q6K1U0.		Os02g0599151	LOC_Os02g38690.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17894	_	OsPP2C18, PP2C18, OsPP28	_	protein phosphatase 2C18, protein phosphatase 2C 18, protein phosphatase 28			2	LOC_Os02g38710. A3A8Q4.		Os02g0599200	LOC_Os02g38710.1				GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17895	_	OsPP2C19, PP2C19, OsPP29	_	protein phosphatase 2C19, protein phosphatase 2C 19, protein phosphatase 29			2	LOC_Os02g38780. Q0DZT4.		Os02g0599700	LOC_Os02g38780.3, LOC_Os02g38780.2, LOC_Os02g38780.1				GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding		
17896	_	OsPP2C20, PP2C20, OsPP30	_	protein phosphatase 2C20, protein phosphatase 2C 20, protein phosphatase 30			2	LOC_Os02g38804. Q6K5I0.		Os02g0600033	LOC_Os02g38804.1				GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding		
17897	_	OsPP2C21, PP2C21, OsPP31	_	protein phosphatase 2C21, protein phosphatase 2C 21, protein phosphatase 31			2	LOC_Os02g39410. A3A8W2.		Os02g0606900	LOC_Os02g39410.3, LOC_Os02g39410.2, LOC_Os02g39410.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17898	_	OsPP2C22, PP2C22, OsPP33	_	protein phosphatase 2C22, protein phosphatase 2C 22, protein phosphatase 33			2	LOC_Os02g39480. A3A8W6.		Os02g0607500	LOC_Os02g39480.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17899	_	OsPP2C23, PP2C23, OsPP34	_	protein phosphatase 2C23, protein phosphatase 2C 23, protein phosphatase 34			2	LOC_Os02g42250. Q6H7J4.		Os02g0633700	LOC_Os02g42250.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17900	_	OsPP2C24, PP2C24, OsPP35	_	protein phosphatase 2C24, protein phosphatase 2C 24, protein phosphatase 35			2	LOC_Os02g42270. Q6H7J3.		Os02g0633900	LOC_Os02g42270.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17901	_	OsPP2C25, PP2C25, OsPP36	_	protein phosphatase 2C25, protein phosphatase 2C 25, protein phosphatase 36			2	LOC_Os02g46080. Q6ZHC8.		Os02g0685600	LOC_Os02g46080.2, LOC_Os02g46080.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17902	_	OsPP2C26, PP2C26, OsPP37	_	protein phosphatase 2C26, protein phosphatase 2C 26, protein phosphatase 37			2	LOC_Os02g46490. Q6ZGY0.		Os02g0690500	LOC_Os02g46490.1				GO:0009933 - meristem structural organization, GO:0005886 - plasma membrane, GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding, GO:0005543 - phospholipid binding, GO:0009826 - unidimensional cell growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010074 - maintenance of meristem identity		
17903	_	OsPP2C27, PP2C27, OsPP40	_	protein phosphatase 2C27, protein phosphatase 2C 27, protein phosphatase 40			2	LOC_Os02g55560. Q69QZ0.		Os02g0799000	LOC_Os02g55560.2, LOC_Os02g55560.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17904	_	OsPP2C28, PP2C28, OsPP43	_	protein phosphatase 2C28, protein phosphatase 2C 28, protein phosphatase 43			3	LOC_Os03g04430. Q10S32.		Os03g0137200	LOC_Os03g04430.3, LOC_Os03g04430.2, LOC_Os03g04430.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17905	_	OsPP2C29, PP2C29, OsPP46	_	protein phosphatase 2C29, protein phosphatase 2C 29, protein phosphatase 46			3	LOC_Os03g10950. Q8H063.		Os03g0207400	LOC_Os03g10950.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17906	_	OsPP2C31, PP2C31, OsPP49	_	protein phosphatase 2C31, protein phosphatase 2C 31, protein phosphatase 49			3	LOC_Os03g16760. Q10NB9.		Os03g0275100	LOC_Os03g16760.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17907	_	OsPP2C32, PP2C32, OsPP50	_	protein phosphatase 2C32, protein phosphatase 2C 32, protein phosphatase 50			3	LOC_Os03g18150. Q10MX1.		Os03g0292100	LOC_Os03g18150.1				GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0010440 - stomatal lineage progression, GO:0009738 - abscisic acid mediated signaling, GO:0009611 - response to wounding, GO:0009536 - plastid, GO:0006470 - protein amino acid dephosphorylation, GO:0005634 - nucleus, GO:0004722 - protein serine/threonine phosphatase activity, GO:0050832 - defense response to fungus		
17908	_	OsPP2C33, PP2C33, OsPP51	_	protein phosphatase 2C33, protein phosphatase 2C 33, protein phosphatase 51			3	LOC_Os03g18970. Q10MN6.		Os03g0301700	LOC_Os03g18970.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17909	_	OsPP2C34, PP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c	_	protein phosphatase 2C34, protein phosphatase 2C 34, protein phosphatase 55, BTH-induced protein phosphatase 2C 2			3	LOC_Os03g55320. BI118738, BI118739. Q94H98. OsBIPP2C2 in Hu et al. 2009.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0761100	LOC_Os03g55320.3, LOC_Os03g55320.2, LOC_Os03g55320.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17910	_	OsPP2C36, PP2C36, OsPP60	_	protein phosphatase 2C36, protein phosphatase 2C 36, protein phosphatase 60			3	LOC_Os03g61690. Q7Y138.		Os03g0832400	LOC_Os03g61690.2, LOC_Os03g61690.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17911	_	OsPP2C37, PP2C37, OsPP61	_	protein phosphatase 2C37, protein phosphatase 2C 37 protein phosphatase 61			4	LOC_Os04g08560. Q7XP01.		Os04g0167900					GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17912	_	OsPP2C38, PP2C38, OsPP63	_	protein phosphatase 2C38, protein phosphatase 2C 38, protein phosphatase 63			4	LOC_Os04g25570. Q7XW27.		Os04g0321800	LOC_Os04g25570.1				GO:0006470 - protein amino acid dephosphorylation, GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0005634 - nucleus		
17913	_	OsPP2C39, PP2C39, OsPP64	_	protein phosphatase 2C39, protein phosphatase 2C 39, protein phosphatase 64			4	LOC_Os04g33080. Q7XVF9.		Os04g0403701	LOC_Os04g33080.3, LOC_Os04g33080.2, LOC_Os04g33080.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17914	_	OsPP2C40, PP2C40, OsPP65	_	protein phosphatase 2C40, protein phosphatase 2C 40, protein phosphatase 65			4	LOC_Os04g37660. Q7XTC7.		Os04g0449400	LOC_Os04g37660.2, LOC_Os04g37660.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17915	_	OsPP2C41, PP2C41, OsPP66	_	protein phosphatase 2C41, protein phosphatase 2C 41, protein phosphatase 66			4	LOC_Os04g37904. Q7XQU7.		Os04g0452000	LOC_Os04g37904.2, LOC_Os04g37904.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005886 - plasma membrane		
17916	_	OsPP2C42, PP2C42, OsPP67	_	protein phosphatase 2C42, protein phosphatase 2C 42, protein phosphatase 67			4	LOC_Os04g42260. Q7XU84.		Os04g0500900	LOC_Os04g42260.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17917	_	OsPP2C43, PP2C43, OsPP68	_	protein phosphatase 2C43, protein phosphatase 2C 43, protein phosphatase 68			4	LOC_Os04g49490. Q7XUC5.		Os04g0584300	LOC_Os04g49490.2, LOC_Os04g49490.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17918	_	OsPP2C44, PP2C44, OsPP69	_	protein phosphatase 2C44, protein phosphatase 2C 44, protein phosphatase 69			4	LOC_Os04g52000. Q0JAA0.		Os04g0609600	LOC_Os04g52000.1				GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0004721 - phosphoprotein phosphatase activity		
17919	_	OsPP2C45, PP2C45, OsPP70	_	protein phosphatase 2C45, protein phosphatase 2C 45, protein phosphatase 70			4	LOC_Os04g56450. Q7XR06.		Os04g0659500	LOC_Os04g56450.2, LOC_Os04g56450.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17920	_	OsPP2C46, PP2C46, OsPP71	_	protein phosphatase 2C46, protein phosphatase 2C 46, protein phosphatase 71			5	LOC_Os05g02110. A3AZ89.		Os05g0111800	LOC_Os05g02110.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17921	_	OsPP2C47, PP2C47, OsPP72	_	protein phosphatase 2C47, protein phosphatase 2C 47, protein phosphatase 72			5	LOC_Os05g04360. Q6AUQ4.		Os05g0134200	LOC_Os05g04360.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17922	_	OsPP2C48, PP2C48, OsPP75	_	protein phosphatase 2C48, protein phosphatase 2C 48, protein phosphatase 75			5	LOC_Os05g29030. Q6L482.		Os05g0358500	LOC_Os05g29030.2, LOC_Os05g29030.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation		
17923	_	OsPP2C50, PP2C50, OsPP78, OsABIL3, ABIL3	_	protein phosphatase 2C50, protein phosphatase 2C 50, protein phosphatase 78, OsABI-LIKE3, ABI-LIKE3, ABI-LIKE 3			5	LOC_Os05g46040. Q6L5H6. the closest ortholog of AtHAB1. PDB: 5GWP (wild-type) and 5GWO (FM mutant).		Os05g0537400	LOC_Os05g46040.2, LOC_Os05g46040.1				GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation	TO:0000615 - abscisic acid sensitivity	
17924	_	OsPP2C51, PP2C51, OsPP79	_	protein phosphatase 2C51, protein phosphatase 2C 51, protein phosphatase 79			5	LOC_Os05g49730. Q65XK7.	 Seed - Physiological traits - Dormancy	Os05g0572700	LOC_Os05g49730.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0009738 - abscisic acid mediated signaling, GO:0010030 - positive regulation of seed germination	TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage , PO:0009009 - plant embryo 
17925	_	OsPP2C52, PP2C52, OsPP80	_	protein phosphatase 2C52, protein phosphatase 2C 52, protein phosphatase 80			5	LOC_Os05g50970. Q6L5C4.		Os05g0587100	LOC_Os05g50970.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17926	_	OsPP2C53, PP2C53, OsPP81, OsABIL2, ABIL2	_	protein phosphatase 2C53, protein phosphatase 2C 53, protein phosphatase 81, OsABI-LIKE2, ABI-LIKE2, ABI-LIKE 2		osabil2	5	LOC_Os05g51510. Q6L4R7. GO:2000280: regulation of root development. GO:2000070: regulation of response to water deprivation.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os05g0592800	LOC_Os05g51510.2, LOC_Os05g51510.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0048623 - seed germination on parent plant, GO:0006470 - protein amino acid dephosphorylation, GO:2000038 - regulation of stomatal complex development, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0048364 - root development, GO:0046872 - metal ion binding	TO:0002665 - root hair length, TO:0000043 - root anatomy and morphology trait, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000656 - root development trait, TO:0000145 - internode length, TO:0000566 - stomatal frequency, TO:0000276 - drought tolerance	PO:0007520 - root development stage 
17927	_	OsPP2C54, PP2C54, OsPP84	_	protein phosphatase 2C54, protein phosphatase 2C 54, protein phosphatase 84			6	LOC_Os06g08140. Q5SMK6. GO:0061416: regulation of transcription from RNA polymerase II promoter in response to salt stress.		Os06g0179700	LOC_Os06g08140.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0006470 - protein amino acid dephosphorylation, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
17928	_	OsPP2C55, PP2C55, OsPP86	_	protein phosphatase 2C55, protein phosphatase 2C 55, protein phosphatase 86			6	LOC_Os06g33530. Q652Z7. 		Os06g0526700	LOC_Os06g33530.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity		
17929	_	OsPP2C56, PP2C56, OsPP87	_	protein phosphatase 2C56, protein phosphatase 2C 56, protein phosphatase 87			6	LOC_Os06g33549. Q0DBU3. 		Os06g0526800	LOC_Os06g33549.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17930	_	OsPP2C57, PP2C57, OsPP89	_	protein phosphatase 2C57, protein phosphatase 2C 57, protein phosphatase 89			6	LOC_Os06g39600. Q69VD9. 		Os06g0597200	LOC_Os06g39600.2, LOC_Os06g39600.1				GO:0006470 - protein amino acid dephosphorylation, GO:0005634 - nucleus, GO:0050688 - regulation of defense response to virus, GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0004722 - protein serine/threonine phosphatase activity		
17931	_	OsPP2C58, PP2C58, OsPP90	_	protein phosphatase 2C58, protein phosphatase 2C 58, protein phosphatase 90			6	LOC_Os06g44210. Q67UP9. 		Os06g0651600	LOC_Os06g44210.2, LOC_Os06g44210.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17932	_	OsPP2C59, PP2C59, OsPP91	_	protein phosphatase 2C59, protein phosphatase 2C 59, protein phosphatase 91			6	LOC_Os06g48300. Q5Z6F5. 		Os06g0698300	LOC_Os06g48300.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0048046 - apoplast, GO:0046872 - metal ion binding, GO:0044419 - interspecies interaction between organisms, GO:0042742 - defense response to bacterium, GO:0006470 - protein amino acid dephosphorylation, GO:0005886 - plasma membrane		
17933	_	OsPP2C60, PP2C60, OsPP92	_	protein phosphatase 2C60, protein phosphatase 2C 60, protein phosphatase 92			6	LOC_Os06g50380. Q5Z8P0. 		Os06g0717800	LOC_Os06g50380.3, LOC_Os06g50380.2, LOC_Os06g50380.1				GO:0005886 - plasma membrane, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0006470 - protein amino acid dephosphorylation		
17934	_	OsPP2C61, PP2C61, OsPP93	_	protein phosphatase 2C61, protein phosphatase 2C 61, protein phosphatase 93			7	LOC_Os07g02330. Q7XHN8. 		Os07g0114000	LOC_Os07g02330.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17935	_	OsPP2C62, PP2C62, OsPP95	_	protein phosphatase 2C62, protein phosphatase 2C 62, protein phosphatase 95			7	LOC_Os07g32380. Q0D673. 		Os07g0507000	LOC_Os07g32380.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17936	_	OsPP2C63, PP2C63, OsPP96	_	protein phosphatase 2C63, protein phosphatase 2C 63, protein phosphatase 96			7	LOC_Os07g33230. Q0D629. 		Os07g0516100	LOC_Os07g33230.1				GO:0004721 - phosphoprotein phosphatase activity		
17937	_	OsPP2C64, PP2C64, OsPP97	_	protein phosphatase 2C64, protein phosphatase 2C 64, protein phosphatase 97			7	LOC_Os07g37890. Q8H4S6. 		Os07g0566200	LOC_Os07g37890.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0004721 - phosphoprotein phosphatase activity		
17938	_	OsPP2C65, PP2C65, OsPP98	_	protein phosphatase 2C65, protein phosphatase 2C 65, protein phosphatase 98			7	LOC_Os07g45170. Q8H2T0. 		Os07g0646100	LOC_Os07g45170.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0005886 - plasma membrane, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17939	_	OsPP2C66, PP2C66, OsPP102	_	protein phosphatase 2C66, protein phosphatase 2C 66, protein phosphatase 102			8	LOC_Os08g39100. Q6ZKL8. 		Os08g0500300	LOC_Os08g39100.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005886 - plasma membrane		
17940	_	OsPP2C67, PP2C67, OsPP107	_	protein phosphatase 2C67, protein phosphatase 2C 67, protein phosphatase 107			9	LOC_Os09g14540. Q0J2R1. 		Os09g0314400	LOC_Os09g14540.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17941	_	OsPP2C69, PP2C69, OsPP109	_	protein phosphatase 2C69, protein phosphatase 2C 69, protein phosphatase 109			9	LOC_Os09g28560. Q67J17. 		Os09g0459600	LOC_Os09g28560.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17942	_	OsPP2C70, PP2C70, OsPP110	_	protein phosphatase 2C70, protein phosphatase 2C 70, protein phosphatase 110			9	LOC_Os09g38550. Q653S3. 		Os09g0558000	LOC_Os09g38550.5, LOC_Os09g38550.4, LOC_Os09g38550.2, LOC_Os09g38550.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17943	_	OsPP2C71, PP2C71, OsPP111	_	protein phosphatase 2C71, protein phosphatase 2C 71, protein phosphatase 111			10	LOC_Os10g22460. Q339D2. 		Os10g0370000	LOC_Os10g22460.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17944	_	OsPP2C72, PP2C72, OsPP114	_	protein phosphatase 2C72, protein phosphatase 2C 72, protein phosphatase 114			10	LOC_Os10g39780. Q7XCJ7. 		Os10g0544900	LOC_Os10g39780.4, LOC_Os10g39780.3, LOC_Os10g39780.2, LOC_Os10g39780.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0016021 - integral to membrane, GO:0006470 - protein amino acid dephosphorylation		
17945	_	OsPP2C74, PP2C74, OsPP120	_	protein phosphatase 2C74, protein phosphatase 2C 74, protein phosphatase 120			11	LOC_Os11g13820. Q53Q11. 		Os11g0242200	LOC_Os11g13820.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity		
17946	_	OsPP2C75, PP2C75, OsPP121	_	protein phosphatase 2C75, protein phosphatase 2C 75, protein phosphatase 121			11	LOC_Os11g22404. Q2R637. 		Os11g0417400	LOC_Os11g22404.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17947	_	OsPP2C76, PP2C76, OsPP122	_	protein phosphatase 2C76, protein phosphatase 2C 76, protein phosphatase 122			11	LOC_Os11g37540. A3CCP9. 		Os11g0586100	LOC_Os11g37540.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17948	_	OsPP2C77, PP2C77, OsPP129	_	protein phosphatase 2C77, protein phosphatase 2C 77, protein phosphatase 129			12	LOC_Os12g09640. Q2QWE3. 		Os12g0198200	LOC_Os12g09640.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17949	_	OsPP2C78, PP2C78, OsPP131	_	protein phosphatase 2C78, protein phosphatase 2C 78, protein phosphatase 131			12	LOC_Os12g39120. Q2QN36. 		Os12g0580900	LOC_Os12g39120.1				GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding		
17950	_	PIC23	_	resistance gene analog PIC23			1	an NBS-LRR class R-gene. AF146270.	 Tolerance and resistance - Stress tolerance						GO:0043531 - ADP binding, GO:0006952 - defense response		
17951	_	PIC24	_	resistance gene analog PIC24			11	an NBS-LRR class R-gene. AF146271.							GO:0043531 - ADP binding		
17952	_	PIC27	_	resistance gene analog PIC27			8	an NBS-LRR class R-gene. AF146275.		Os08g0543050	LOC_Os08g43000.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
17953	_		_	histone H3			6	a gibberellin-induced gene. X85102.							GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009739 - response to gibberellin stimulus, GO:0000786 - nucleosome, GO:0006334 - nucleosome assembly	TO:0000166 - gibberellic acid sensitivity	
17954	_		_	PCR clone D, 37 kDa chloroplast inner envelope membrane protein			12	X85103. Q2QM69 (2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic). a gene whose expression pattern did not change over the course of treatment with GA.	 Tolerance and resistance - Stress tolerance	Os12g0615400	LOC_Os12g42090.3, LOC_Os12g42090.2, LOC_Os12g42090.1				GO:0009706 - chloroplast inner membrane, GO:0009651 - response to salt stress, GO:0010236 - plastoquinone biosynthetic process, GO:0016021 - integral to membrane, GO:0051741 - 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity, GO:0010189 - vitamin E biosynthetic process	TO:0006001 - salt tolerance	
17955	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA				M23642.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
17956	YGL10	CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL	YELLOW-GREEN LEAF 10	"chlorophyll a oxygenase, Chlorophyll a oxygenase 1, chlorophyllide a oxygenate 1, Lls1-homologue of maize, \"3, 8-divinyl chlorophyllide a 8-vinyl reductase\", pale green leaf, yellow green leaf 10"		pgl, ygl10	10	LOC_Os10g41780. AB021310. Q8S7E1. AF284781. D46313.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0567400	LOC_Os10g41780.4, LOC_Os10g41780.3, LOC_Os10g41780.2, LOC_Os10g41780.1				GO:0042542 - response to hydrogen peroxide, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0005506 - iron ion binding, GO:0006952 - defense response, GO:0010027 - thylakoid membrane organization, GO:0009535 - chloroplast thylakoid membrane, GO:0009408 - response to heat, GO:0010277 - chlorophyllide a oxygenase activity, GO:0015995 - chlorophyll biosynthetic process, GO:0015996 - chlorophyll catabolic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0060548 - negative regulation of cell death, GO:0046686 - response to cadmium ion, GO:0051607 - defense response to virus, GO:0010150 - leaf senescence, GO:0031969 - chloroplast membrane	TO:0000495 - chlorophyll content, TO:0000063 - mimic response, TO:0000249 - leaf senescence, TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance, TO:0001027 - net photosynthetic rate, TO:0000259 - heat tolerance, TO:0000326 - leaf color	PO:0025034 - leaf 
17957	_	GST	_	glutathione S-transferase			10	AC074232: OSJNBb0005J14.23.	 Biochemical character						GO:0016740 - transferase activity		
17958	_	GST.p	_	glutathione S-transferase pseudogene			10	AC074232: OSJNBb0005J14.6.									
17959	_	GST.p	_	glutathione S-transferase pseudogene			10	AC074232: OSJNBb0005J14.4.									
17960	_	GST	_	Glutathione S-transferase			10	AC091680: OSJNBa0034L04.24. LOC_Os10g38489.	 Biochemical character	Os10g0528200	LOC_Os10g38489.1				GO:0016740 - transferase activity		
17961	GSTU24	OsGSTU24	TAU GLUTATHIONE S-TRANSFERASE 24	glutathione transferase U24	TAU GLUTATHIONE S-TRANSFERASE 24		10	AC091680: OSJNBa0034L04.25. LOC_Os10g38470.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0528100	LOC_Os10g38470.1				GO:0006749 - glutathione metabolic process, GO:0016740 - transferase activity, GO:0004364 - glutathione transferase activity, GO:0009407 - toxin catabolic process, GO:0005737 - cytoplasm		
17962	_	RPS2	_	ribosomal protein S2			10	AC091680: OSJNBa0034L04.40. AC074232: OSJNBb0005J14.8. identical to chloroplastic ribosomal protein S2 (rps2) gene (LOC_Osp1g00270, P0C482).	 Biochemical character		LOC_Osp1g00270				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit		
17963	_	atpI	_	ATPase a subunit, ATP synthase CF0 A subunit			10	AC091680: OSJNBa0034L04.41. AC074232: OSJNBb0005J14.9. identical to chloroplastic ATPase a subunit (atpI) gene (LOC_Osp1g00280, P0C2Y7). Os10g0527100 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)). LOC_Os10g38276.	 Biochemical character		LOC_Osp1g00280				GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0015986 - ATP synthesis coupled proton transport		
17964	_	atpH	_	ATPase III subunit, ATP synthase CF0 C subunit			10	AC091680: OSJNBa0034L04.42. AC074232: OSJNBb0005J14.10. P0C301. identical to chloroplastic ATPase III subunit (atpH) gene (P0C301).	 Biochemical character						GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0008289 - lipid binding, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0016021 - integral to membrane, GO:0015991 - ATP hydrolysis coupled proton transport		
17965	_	atpF	_	ATPase I subunit, ATP synthase CF0 B subunit			10	AC091680: OSJNBa0034L04.43. AC074232: OSJNBb0005J14.11. identical to chloroplastic ATPase I subunit (atpF) gene (P0C2Z0).	 Biochemical character						GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0016021 - integral to membrane		
17966	_	atpA	_	ATPase alpha subunit			10	AC091680: OSJNBa0034L04.44. AC074232: OSJNBb0005J14.21. identical to chloroplastic ATPase alpha subunit (atpA) gene (LOC_Osp1g00310, P0C2Z6). 	 Biochemical character		LOC_Osp1g00310				GO:0015992 - proton transport, GO:0005524 - ATP binding, GO:0046034 - ATP metabolic process		
17967	_	rpoC2	_	RNA polymerase beta' subunit-2 (5'-partial), RNA polymerase beta'' subunit			10	AC074232: OSJNBb0005J14.7. identical to C terminus of chloroplastic RNA polymerase beta subunit 2 (rpoC2) gene (P0C509). 	 Biochemical character								
17968	_	rps14	_	ribosomal protein S14			10	AC074232: OSJNBb0005J14.18. identical to chloroplastic ribosomal protein S14 (rps14) gene (P0C467). 	 Biochemical character								
17969	_		_	photosystem I P700 chlorophyll A apoprotein A2			10	AC074232: OSJNBb0005J14.17. near identical to chloroplastic photosystem I P700 chlorophyll A apoprotein A2 (psaB) gene (LOC_Osp1g00330, P0C358). 	 Biochemical character		LOC_Osp1g00330				GO:0009522 - photosystem I, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane		
17970	_	psaA	_	photosystem I P700 chlorophyll A apoprotein A1			10	AC074232: OSJNBb0005J14.16. near identical to chloroplastic photosystem I P700 chlorophyll A apoprotein A1 gene (LOC_Osp1g00340, P0C355). 	 Biochemical character		LOC_Osp1g00340				GO:0015979 - photosynthesis, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0009522 - photosystem I		
17971	_	rps4	_	ribosomal protein S4			10	AC074232: OSJNBb0005J14.15. identical to chloroplastic ribosomal protein S4 (rps4) gene (P0C488). 	 Biochemical character						GO:0009536 - plastid, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009507 - chloroplast, GO:0015935 - small ribosomal subunit		
17972	_	ndhJ	_	NADH-plastoquinone oxidoreductase subunit J, NADH dehydrogenase subunit J			10	AC074232: OSJNBb0005J14.14. identical to chloroplastic NADH plastoquinone oxidoreductase subunit J (ORF159) gene (LOC_Osp1g00370, P0C340). 	 Biochemical character		LOC_Osp1g00370				GO:0009535 - chloroplast thylakoid membrane, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
17973	_		_	PSII G protein (5'-partial)			10	AC074232: OSJNBb0005J14.13. near identical to chloroplastic PSII G protein (psbG) gene (P0C343). 	 Biochemical character						GO:0046872 - metal ion binding, GO:0048038 - quinone binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
17974	_	ndhC	_	NADH dehydrogenase ND3, NADH dehydrogenase subunit 3			10	AC074232: OSJNBb0005J14.29. near identical to chloroplastic NADH dehydrogenase ND3 (ndhC) gene (P0C320, P0C321 and P0C322). 	 Biochemical character								
17975	_	OSOTP 51, OSOTP51, OTP51	_	organelle transcript processing 51		osotp51	2	a pentatricopeptide repeats protein homologous to organelle transcript processing 51 in Arabidopsis. JN613018. LOC_Os02g47360. Q6ZHJ5.	 Other	Os02g0702000	LOC_Os02g47360.1				GO:0004519 - endonuclease activity, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0009507 - chloroplast, GO:0000373 - Group II intron splicing, GO:0048564 - photosystem I assembly	TO:0000316 - photosynthetic ability	
17976	_	alphaAmy10-C	_	alpha-amylase 10-C			2	M81143. LOC_Os02g52700. Os02g0765300 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character	Os02g0765400	LOC_Os02g52700.1				GO:0003824 - catalytic activity, GO:0005975 - carbohydrate metabolic process, GO:0043169 - cation binding		
17977	_	DEC	_	DECUSSATE		dec, dec-1, dec-2	12	AB683949.	 Vegetative organ - Leaf	Os12g0465700	LOC_Os12g27994.2, LOC_Os12g27994.1				GO:0009736 - cytokinin mediated signaling, GO:0060771 - phyllotactic patterning	TO:0006014 - phyllotaxy, TO:0000167 - cytokinin sensitivity	
17978	_	Ospdhk1	_	pyruvate dehydrogenase kinase 1			3			Os03g0370000	LOC_Os03g25400.1				GO:0016301 - kinase activity, GO:0005524 - ATP binding		
17979	_	OsOSC6	_	oxidosqualene cyclase 6			6	LOC_Os06g28820. KC416147. OsOSC6 is no longer likely to be functional genes because of large disabling mutations (Inagaki et al. 2011).		Os06g0483200	LOC_Os06g28820.1				GO:0016866 - intramolecular transferase activity		
17980	_	OsOSC1	_	oxidosqualene cyclase 1			2	LOC_Os02g04690. 	 Biochemical character	Os02g0139500	LOC_Os02g04690.2, LOC_Os02g04690.1						
17981	_	OsOSC3	_	oxidosqualene cyclase 3			2	LOC_Os02g04730. OsOSC3 is no longer likely to be functional genes because of large disabling mutations (Inagaki et al. 2011).	 Biochemical character	Os02g0140200	LOC_Os02g04730.1				GO:0016104 - triterpenoid biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0034074 - marneral synthase activity		
17982	_	OsOSC4	_	oxidosqualene cyclase 4			2	LOC_Os02g04750-LOC_Os02g04760. This pair of sequences (locus IDs Os02g04750/Os02g04760) was found to form a single OSC gene, being separated by a transposon (Os02g04755) (Inagaki et al. 2011). OsOSC4 is no longer likely to be functional genes because of large disabling mutations (Inagaki et al. 2011).	 Biochemical character	Os02g0140400/Os02g0140500					GO:0042300 - beta-amyrin synthase activity, GO:0042299 - lupeol synthase activity		
17983	_	OsOSC5	_	oxidosqualene cyclase 5			5	LOC_Os05g14800. OsOSC5 is no longer likely to be functional genes because of large disabling mutations (Inagaki et al. 2011).	 Biochemical character		LOC_Os05g14800						
17984	_	OsOSC9	_	oxidosqualene cyclase 9			11	LOC_Os11g18310-LOC_Os11g18340. The pair of sequences (locus IDs Os11g18310/Os11g18340) were found to form a single OSC gene, with the two MSU loci  separated by a third locus (Os11g18320) transcribed on the opposite strand, but with the intervening region nevertheless showing evidence of OSC exons on the 'correct' strand, to a large extent interleaved with the Os11g18320 exons.	 Biochemical character	Os11g0286400	LOC_Os11g18340.1				GO:0016866 - intramolecular transferase activity		
17985	_	OsOSC10	_	oxidosqualene cyclase 10			11	LOC_Os11g18366.	 Biochemical character	Os11g0286800	LOC_Os11g18366.4, LOC_Os11g18366.3, LOC_Os11g18366.2				GO:0016866 - intramolecular transferase activity		
17986	_	OsOSC12	_	oxidosqualene cyclase 12			8	LOC_Os08g12740.	 Biochemical character	Os08g0224000	LOC_Os08g12740.2, LOC_Os08g12740.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
17987	CYP51G1	OsCYP51G1	P-450 51G1	Cytochrome P450 51G1	CYTOCHROME P450 51G1		11	LOC_Os11g32240.	 Biochemical character	Os11g0525200	LOC_Os11g32240.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0005886 - plasma membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
17988	CYP51G3	OsCYP51G3	P-450 51G3	Cytochrome P450 51G3	CYTOCHROME P450 51G3		5	LOC_Os05g12040. metabolite: Syringenone. an obtusifoliol 14alpha-demethylase.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os05g0211100	LOC_Os05g12040.1				GO:0007623 - circadian rhythm, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016132 - brassinosteroid biosynthetic process, GO:0009651 - response to salt stress	TO:0000449 - grain yield per plant, TO:0006031 - inflorescence size, TO:0000445 - seed number, TO:0006001 - salt tolerance, TO:0000053 - pollen sterility, TO:0000206 - leaf angle, TO:0000207 - plant height	
17989	CYP51G4	OsCYP51G4	P-450 51G4	Cytochrome P450 51G4	CYTOCHROME P450 51G4		7	LOC_Os07g37980.	 Biochemical character	Os07g0567200	LOC_Os07g37980.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
17990	CYP51H1	OsCYP51H1	P-450 51H1	Cytochrome P450 51H1	CYTOCHROME P450 51H1		7	LOC_Os07g28160.	 Biochemical character	Os07g0465400	LOC_Os07g28160.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
17991	CYP51H2	OsCYP51H2	P-450 51H2	Cytochrome P450 51H2	CYTOCHROME P450 51H2		7	LOC_Os07g28140.	 Biochemical character	Os07g0465200	LOC_Os07g28140.1						
17992	CYP51H3	OsCYP51H3	P-450 51H3	Cytochrome P450 51H3	CYTOCHROME P450 51H3		7	LOC_Os07g28110.	 Biochemical character	Os07g0464700	LOC_Os07g28110.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity		
17993	CYP51H4	OsCYP51H4	P-450 51H4	Cytochrome P450 51H4	CYTOCHROME P450 51H4		2	LOC_Os02g21810.	 Biochemical character	Os02g0323600	LOC_Os02g21810.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0008168 - methyltransferase activity, GO:0020037 - heme binding		
17994	CYP51H5	OsCYP51H5	P-450 51H5	Cytochrome P450 51H5	CYTOCHROME P450 51H5		2	LOC_Os02g02230.	 Biochemical character	Os02g0113200	LOC_Os02g02230.1				GO:0008398 - sterol 14-demethylase activity, GO:0016126 - sterol biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
17995	CYP51H6	OsCYP51H6	P-450 51H6	Cytochrome P450 51H6	CYTOCHROME P450 51H6		5	LOC_Os05g34325.	 Biochemical character	Os05g0415800	LOC_Os05g34325.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
17996	CYP51H7	OsCYP51H7	P-450 51H7	Cytochrome P450 51H7	CYTOCHROME P450 51H7		5	LOC_Os05g34330.	 Biochemical character	Os05g0415900	LOC_Os05g34330.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
17997	CYP51H8	OsCYP51H8	P-450 51H8	Cytochrome P450 51H8	CYTOCHROME P450 51H8		5	LOC_Os05g34380.	 Biochemical character	Os05g0416400	LOC_Os05g34380.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
17998	CYP51H9	OsCYP51H9	P-450 51H9	Cytochrome P450 51H9	CYTOCHROME P450 51H9		7	LOC_Os07g37970.	 Biochemical character	Os07g0567100	LOC_Os07g37970.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
17999	_	orf288, LD-orf310	_				Mt	LOC_Osm1g00240. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99379 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19867 (Nipponbare complete mitochondrial genome). AP011077 (Indica Group mitochondrial DNA, complete genome): BAI68030. LD-orf310 in AP011077 which is identical to orf288 in Nipponbare. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00240				GO:0005739 - mitochondrion		
18000	_	orf194	_				Mt	LOC_Osm1g00250. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99346 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19868 (Nipponbare complete mitochondrial genome).			LOC_Osm1g00250				GO:0005739 - mitochondrion		
18001	_	orf153	_				Mt	LOC_Osm1g00380. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99376 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19881 (Nipponbare complete mitochondrial genome). JN861111: AER13019, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03733 (indica IR6888 complete mitochondrial genome).			LOC_Osm1g00380				GO:0005739 - mitochondrion		
18002	RPS13	rps13	S13 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME	S13 subunit of the mitochondrial ribosome, Ribosomal protein S13	S13 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME		Mt	LOC_Osm1g00390. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99390 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19882 (Nipponbare complete mitochondrial genome). JN861111: AER13028, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03732 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00390				GO:0015935 - small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0042254 - ribosome biogenesis, GO:0005739 - mitochondrion, GO:0003723 - RNA binding		
18004	5S  rRNA	rrn5	5S RIBOSOMAL RNA	5S RIBOSOMAL RNA, 5S ribosomal RNA, 5S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
18005	_	rps14, rps14.p, pseudo-rps14	_	Ribosomal protein S14 pseudogene	_		Mt	LOC_Osm1g00560. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00560						
18006	_	trnV.p, pseudo-trnV, trnV	_	tRNA-Val pseudogene, tRNA-Val			Mt	BA000029 (Nipponbare complete mitochondrial genome). D13100 (a transferred chloroplast DNA sequence). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029: pseudo-trnV and JF281153: trnV pseudogene are in conflict.									
18007	_	orf258, orf317	_				Mt	LOC_Osm1g00160. BA000029: BAC19859 (Nipponbare complete mitochondrial genome). JF281153: AEZ03754 (indica IR6888  complete mitochondrial genome). orf317 in JF281153. 			LOC_Osm1g00160				GO:0005739 - mitochondrion		
18009	_	ndhK	_				Mt	D13112 (a transferred chloroplast DNA sequence).									
18010	RPOB.P	rpoB.p	RNA POLYMERASE SUBUNIT B PSEUDOGENE	RNA polymerase beta chain pseudogene, rpoB pseudogene	RNA POLYMERASE SUBUNIT B PSEUDOGENE		Mt	D13111 (a transferred chloroplast DNA sequence). Result of an intramitochondrial duplication event following transfer of a ctDNA fragment (Nakazono et al. 1993).	 Biochemical character								
18012	_	orf161b	_				Mt	JF281153: AEZ03741 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0005739 - mitochondrion, GO:0015986 - ATP synthesis coupled proton transport, GO:0005524 - ATP binding		
18013	_	orf389	_				Mt	JF281153: AEZ03740 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0000287 - magnesium ion binding, GO:0005739 - mitochondrion, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide		
18014	_	orf165b	_				Mt	JF281153: AEZ03739 (indica IR6888 complete mitochondrial genome).							GO:0016740 - transferase activity, GO:0006412 - translation, GO:0005739 - mitochondrion, GO:0015934 - large ribosomal subunit, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome		
18015	_	orf356	_				Mt	JF281153: AEZ03731 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0016491 - oxidoreductase activity, GO:0022904 - respiratory electron transport chain, GO:0016021 - integral to membrane, GO:0005739 - mitochondrion, GO:0070469 - respiratory chain, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding		
18016	_	orf347	_				Mt	JF281153: AEZ03730 (indica IR6888 complete mitochondrial genome).	 Other						GO:0006351 - transcription, DNA-dependent, GO:0005739 - mitochondrion, GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity		
18017	_	orf579	_				Mt	JF281153: AEZ03729 (indica IR6888 complete mitochondrial genome).	 Other						GO:0005739 - mitochondrion, GO:0006351 - transcription, DNA-dependent, GO:0003899 - DNA-directed RNA polymerase activity, GO:0003677 - DNA binding		
18018	_	orf1054	_				Mt	JF281153: AEZ03728 (indica IR6888 complete mitochondrial genome).	 Other						GO:0003899 - DNA-directed RNA polymerase activity, GO:0032549 - ribonucleoside binding, GO:0003677 - DNA binding, GO:0005739 - mitochondrion, GO:0006351 - transcription, DNA-dependent		
18019	_	orf154	_				Mt	JF281153: AEZ03720 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18020	_	orf160	_				Mt	JF281153: AEZ03719 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18021	_	orf173c	_				Mt	JF281153: AEZ03716 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18022	_	atp1, atp1-1, ATP1	_	ATP synthase F0 subunit 1, ATP synthase subunit 1, ATP synthase alpha subunit			Mt	LOC_Osm1g00580. P0C521, P0C522. AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19899 (Nipponbare complete mitochondrial genome). JN861111: AER12983, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03711 (indica IR6888 complete mitochondrial genome). atp1-1 in JN861111 and JN861112. an F1 sector component of complex V.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00580				GO:0005507 - copper ion binding, GO:0005524 - ATP binding, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0015991 - ATP hydrolysis coupled proton transport, GO:0015986 - ATP synthesis coupled proton transport, GO:0050897 - cobalt ion binding, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0005739 - mitochondrion, GO:0005743 - mitochondrial inner membrane, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0006979 - response to oxidative stress, GO:0008266 - poly(U) RNA binding, GO:0008270 - zinc ion binding, GO:0009451 - RNA modification, GO:0009941 - chloroplast envelope		
18023	_	trnS(GGA), trnS	_	tRNA-Ser			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome).									
18024	NAD9	nad9, nad9-1, CI-27kD, CI-27KD	NADH DEHYDROGENASE SUBUNIT 9	NADH dehydrogenase subunit 9, NADH-ubiquinone oxidoreductase 27 kDa subunit, Complex I-27kD, Complex I-27KD, subunit 9 of NADH dehdrogenase	NADH DEHYDROGENASE SUBUNIT 9		Mt	EC=1.6.5.3 EC=1.6.99.3 D50099. Q35322. LOC_Osm1g00590. BA000029: BAC19900 (Nipponbare complete mitochondrial genome). JN861111: AER13001, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03710 (indica IR6888 complete mitochondrial genome). nad9-1 in JN861111 and JN861112.	 Biochemical character		LOC_Osm1g00590	GR:0100144			GO:0005747 - mitochondrial respiratory chain complex I, GO:0006120 - mitochondrial electron transport, NADH to ubiquinone, GO:0006810 - transport, GO:0022900 - electron transport chain, GO:0070469 - respiratory chain, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion, GO:0005743 - mitochondrial inner membrane		
18025	_	orf164	_				Mt	JF281153: AEZ03709 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18026	_	orf173, orf173-1, orf173b	_				Mt	LOC_Osm1g00600. BA000029: BAC19901 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99381 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111: AER13010, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03708 (indica IR6888 complete mitochondrial genome). orf173-1 in JN861111 and JN861112. orf173b in JF281153.			LOC_Osm1g00600				GO:0005739 - mitochondrion		
18027	_	orf162, orf162-1	_				Mt	LOC_Osm1g00610. BA000029: BAC19902 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99380 (cultivar Nipponbare). JN861111: AER13041, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03707 (indica IR6888 complete mitochondrial genome). orf162-1 in JN861111 and JN861112.			LOC_Osm1g00610				GO:0005739 - mitochondrion		
18028	_	orf187, orf187-2	_				Mt	JN861111: AER13040, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03706 (indica IR6888 complete mitochondrial genome). orf187-2 in JN861111 and JN861112.							GO:0005739 - mitochondrion		
18029	_	rrn18	_	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
18030	_	rps14, rps14.p, pseudo-rps14	_	Ribosomal protein S14 pseudogene	_		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). 									
18035	_	cob	_	apocytochrome b			Mt	JN861111: AER12985, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0009055 - electron carrier activity, GO:0022904 - respiratory electron transport chain, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0070469 - respiratory chain, GO:0005739 - mitochondrion, GO:0046872 - metal ion binding		
18036	_	mat-r-2	_	maturase-related protein			Mt	JN861111: AER12975, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0003723 - RNA binding, GO:0005739 - mitochondrion, GO:0006397 - mRNA processing, GO:0003964 - RNA-directed DNA polymerase activity	TO:0000437 - male sterility	
18037	_	rps1-2	_	ribosomal protein S1	_		Mt	JN861111:AER13039, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Other						GO:0005840 - ribosome, GO:0005739 - mitochondrion		
18038	_	ccmFn-2	_	cytochrome c biogenesis Fn			Mt	JN861111: AER12977, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0016020 - membrane, GO:0005739 - mitochondrion, GO:0015232 - heme transporter activity, GO:0008535 - respiratory chain complex IV assembly		
18039	_	ccmFc-2	_	cytochrome c biogenesis Fc			Mt	JN861111:AER12997, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18040	_	trnS(GCT), trnS	_	tRNA-Ser			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
18041	_	trnC(GCA), trnC	_	tRNA-Cys			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
18042	_	orf165-2	_				Mt	JN861111:AER13017, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18043	_	orf284-2	_				Mt	JN861111: AER12993, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18044	_	cox1-2	_	cytochrome c oxidase subunit 1			Mt	JN861111:AER12980, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0020037 - heme binding, GO:0022900 - electron transport chain, GO:0016021 - integral to membrane, GO:0004129 - cytochrome-c oxidase activity, GO:0005506 - iron ion binding, GO:0070469 - respiratory chain, GO:0005507 - copper ion binding, GO:0005739 - mitochondrion, GO:0005743 - mitochondrial inner membrane, GO:0009060 - aerobic respiration, GO:0006119 - oxidative phosphorylation, GO:0005886 - plasma membrane		
18045	_	rpl5-2	_	ribosomal protein L5			Mt	JN861111: AER13004, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Other						GO:0005739 - mitochondrion, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
18046	_	orf187-3	_				Mt	JN861111: AER13037, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18047	_	atp6-2	_	ATP synthase F0 subunit 6			Mt	JN861111: AER12989, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0005739 - mitochondrion, GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0005743 - mitochondrial inner membrane		
18052	_	orf152b-2	_				Mt	JN861111: AER13022, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18053	_	orf187-4	_				Mt	JN861111: AER13036, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18054	_	rrn5	_	5S ribosomal RNA			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
18055	_	rrn18	_	18S ribosomal RNA			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
18060	_	trnfM(CAT), trnfM	_	tRNA-Met, initiator methionine tRNA			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
18064	_	nad3	_	NADH dehydrogenase subunit 3			Mt	JN861111: AER13033, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03699 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0070469 - respiratory chain, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion		
18067	_	trnQ	_	tRNA-Gln			Mt	JF281153 (indica IR6888 complete mitochondrial genome).									
18068	_	orf161c	_				Mt	JF281153: AEZ03762 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18071	_	orf221	_				Mt	JF281153: AEZ03760 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0020037 - heme binding, GO:0016491 - oxidoreductase activity, GO:0005506 - iron ion binding, GO:0005739 - mitochondrion, GO:0022904 - respiratory electron transport chain, GO:0016021 - integral to membrane, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity		
18072	_	orf160b	_				Mt	JF281153: AEZ03759 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18073	_	orf313	_				Mt	JF281153: AEZ03757 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0015991 - ATP hydrolysis coupled proton transport, GO:0005739 - mitochondrion, GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain, GO:0005524 - ATP binding, GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances		
18076	_	rps19	_	ribosomal protein S19			Pt	X15901 (Japonica Group chloroplast genome).	 Other								
18077	_	ycf15.p	_	ycf15 pseudo, ycf15 pseudogene			Pt	JN861109, JN861110 (Indica Group chloroplast genome).							GO:0009507 - chloroplast		
18078	_	ycf15.p	_	ycf15 pseudo, ycf15 pseudogene			Pt	JN861109, JN861110 (Indica Group chloroplast genome).							GO:0009507 - chloroplast		
18079	_	PAL09	_	phenylalanine ammonia-lyase 9	_		8	AY360388 (OSJNBa0038J12). 	 Biochemical character								
18080	_	PAL10	_	phenylalanine ammonia-lyase 10	_		8	OSJNBa0061E21.122. 	 Biochemical character								
18081	_	PAL11	_	phenylalanine ammonia-lyase 11	_		5	AC144735 (OSJNBa0001A14). 	 Biochemical character	Os05g0558900	LOC_Os05g48510.2, LOC_Os05g48510.1				GO:0000287 - magnesium ion binding, GO:0005829 - cytosol, GO:0006432 - phenylalanyl-tRNA aminoacylation, GO:0000049 - tRNA binding, GO:0004826 - phenylalanine-tRNA ligase activity, GO:0005524 - ATP binding		
18082	_	C4H, OsC4H	_	cinnamate 4-hydroxylase			2	AP004850 (OJ1342). OsC4H here may correspond to  Os02g0467000 or Os02g0467600.	 Biochemical character						GO:0020037 - heme binding, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity	TO:0000624 - allelopathic effect	
18083	_	AAO3, OsAAO3, OsAO1, AO1	_	Indole-3-acetaldehyde oxidase 3, aldehyde oxidase 1			3	Q852M1. one of the four putative rice aldehyde oxidase (AO) proteins (Abu-Zaitoon 2014). 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0790900	LOC_Os03g57690.1				GO:0009629 - response to gravity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0050660 - FAD binding, GO:0042742 - defense response to bacterium, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0009851 - auxin biosynthetic process, GO:0004031 - aldehyde oxidase activity, GO:0005506 - iron ion binding, GO:0005829 - cytosol, GO:0009055 - electron carrier activity, GO:0009688 - abscisic acid biosynthetic process	TO:0002693 - gravity response trait, TO:0002672 - auxin content, TO:0000175 - bacterial blight disease resistance	
18084	_	NIT1, OsNIT2, NIT2	_	nitrilase 1, Nitrilase 2			2	Q6H849. OsNIT2 in Abu-Zaitoon 2014. LOC_Os02g42350.	 Biochemical character	Os02g0635200	LOC_Os02g42350.2, LOC_Os02g42350.1				GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0080109 - indole-3-acetonitrile nitrile hydratase activity, GO:0019499 - cyanide metabolic process, GO:0046686 - response to cadmium ion, GO:0047427 - cyanoalanine nitrilase activity, GO:0047558 - 3-cyanoalanine hydratase activity, GO:0048046 - apoplast, GO:0051410 - detoxification of nitrogen compound, GO:0080061 - indole-3-acetonitrile nitrilase activity, GO:0009970 - cellular response to sulfate starvation, GO:0009851 - auxin biosynthetic process, GO:0009507 - chloroplast, GO:0009506 - plasmodesma	TO:0002672 - auxin content	
18085	_	ZB8	_	Phenylalanine ammonia lyase			5		 Biochemical character								
18086	_	OsFbox025, OsFbox25, Os_F0325	_	F-box protein 25			1	LOC_Os01g41290. Os_F0325 in Hua et al. 2011.	 Biochemical character	Os01g0596100	LOC_Os01g41290.1				GO:0016829 - lyase activity		
18087	_	Os_F0698	_				12	LOC_Os12g40370. F-box protein. Os_F0698 in Hua et al. 2011.		Os12g0595401	LOC_Os12g40370.1						
18088	_	OsUXS1, UXS-1	_	UDP-xylose synthase 1, UDP-glucuronic acid decarboxylase 1			3	AB167397.	 Biochemical character	Os03g0280800	LOC_Os03g17230.1				GO:0048040 - UDP-glucuronate decarboxylase activity, GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding		
18089	_	OsUXS5, UXS-5	_	UDP-xylose synthase 5, UDP-glucuronic acid decarboxylase 5			5	AB182636.	 Biochemical character	Os05g0363200	LOC_Os05g29990.1				GO:0003824 - catalytic activity, GO:0044237 - cellular metabolic process		
18090	_	OsUXS6, UXS-6	_	UDP-xylose synthase 6, UDP-glucuronic acid decarboxylase 6			7	AB183706.	 Biochemical character	Os07g0674100	LOC_Os07g47700.1				GO:0003824 - catalytic activity, GO:0044237 - cellular metabolic process		
18091	_	UV-DDB1, OsUV-DDB1, OsUV-DDB	_	UV-damaged DNA binding protein large subunit, UV-DDB large subunit, UV-damaged DNA binding protein, UV-damaged DNA binding protein 1			5	AB037144.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0592400	LOC_Os05g51480.2, LOC_Os05g51480.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009793 - embryonic development ending in seed dormancy, GO:0003676 - nucleic acid binding, GO:0010100 - negative regulation of photomorphogenesis		
18092	_	CSB, OsCBS	_	Cockayne syndrome WD-repeat protein			1	AB111944.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0102800	LOC_Os01g01312.1				GO:0006281 - DNA repair, GO:0010332 - response to gamma radiation, GO:0005524 - ATP binding, GO:0004386 - helicase activity		
18094	_	OsNMD3, NMD3	_	60S ribosomal subunit nuclear export adaptor NMD3			10	LOC_Os10g42320.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits	Os10g0573900	LOC_Os10g42320.1				GO:0005634 - nucleus, GO:0007029 - endoplasmic reticulum organization, GO:0009834 - secondary cell wall biogenesis, GO:0006611 - protein export from nucleus, GO:0005829 - cytosol	TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000145 - internode length	
18095	_	OsRPL10Ac1, OsL10a	_	large ribosomal protein 10Ac1, 60S Ribosomal Protein L10a			8	LOC_Os08g44450.		Os08g0558800	LOC_Os08g44450.3, LOC_Os08g44450.2, LOC_Os08g44450.1				GO:0003723 - RNA binding		
18096	DSG1	OsDSG1, DSG1	DELAYED SEED GERMINATION 1	Delayed Seed Germination1, delayed seed germination 1	RING FINGER E3 LIGASE		9	RING finger E3 ligase.	 Tolerance and resistance - Stress tolerance	Os09g0434200	LOC_Os09g26400.1				GO:0016874 - ligase activity, GO:0009651 - response to salt stress, GO:0006865 - amino acid transport, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0004842 - ubiquitin-protein ligase activity, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0006979 - response to oxidative stress, GO:0006950 - response to stress, GO:0009738 - abscisic acid mediated signaling	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000164 - stress trait, TO:0000276 - drought tolerance	
18097	_	OsPYL7, PYL7, OsPYL12	_	pyrabactin resistance-like 12, PYR1-like 7, pyrabactin resistance 1-like 7		pyl7	6	ABA receptor. LOC_Os06g33480. OsPYL7 in He et al. 2014, Miao et al. 2018. OsPYL11, 12 or 13 in Tian et al. 2015. No name in Kim et al. 2012. thought to be nonfunctional (Tian et al. 2015).  GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os06g0526400	LOC_Os06g33480.1				GO:0005634 - nucleus, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0010427 - abscisic acid binding, GO:0009738 - abscisic acid mediated signaling, GO:0005737 - cytoplasm		
18098	_	OsPYL12, PYL12, OsPYL11, PYL11	_	pyrabactin resistance-like 11, PYR1-like 12, pyrabactin resistance 1-like 12		pyl12	2	ABA receptor. OsPYL12 in He et al. 2014, Miao et al. 2018. OsPYL11, 12 or 13 in Tian et al. 2015. No name in Kim et al. 2012. thought to be nonfunctional (Tian et al. 2015). LOC_Os02g15620. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.	 Seed - Physiological traits - Dormancy	Os02g0255300	LOC_Os02g15620.1				GO:0048623 - seed germination on parent plant, GO:0009738 - abscisic acid mediated signaling, GO:2000033 - regulation of seed dormancy, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0010427 - abscisic acid binding	TO:0000253 - seed dormancy	
18099	_	OsRAN1, RAN1	_				1	small G-protein. AB015971. Q7F7I7. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0611100					GO:0007067 - mitosis, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0006886 - intracellular protein transport, GO:0006913 - nucleocytoplasmic transport, GO:0007264 - small GTPase mediated signal transduction, GO:0009409 - response to cold, GO:0009734 - auxin mediated signaling pathway, GO:0032502 - developmental process	TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity, TO:0000357 - growth and development trait	
18101	_	OsRAN3, RAN3	_					small G-protein. 	 Biochemical character								
18102	LYL1	OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P	LIGHT-INDUCED YELLOW LEAF 1	Geranylgeranyl reductase, Light-Induced Yellow Leaf 1, Geranylgeranyl Reductase I, Geranylgeranyl-diphosphate reductase, geranylgeranyl reductase 1		502ys, lyl1-1, lyl1-2	2	LOC_Os02g51080. Q6Z2T6. KF305678, KF305679. GO:0080183: response to photooxidative stress. an AtGGR (At1g74470) orthologue. 	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os02g0744900	LOC_Os02g51080.1				GO:0031969 - chloroplast membrane, GO:0035304 - regulation of protein amino acid dephosphorylation, GO:0009658 - chloroplast organization, GO:0015995 - chlorophyll biosynthetic process, GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, GO:0019344 - cysteine biosynthetic process, GO:0045550 - geranylgeranyl reductase activity, GO:0000302 - response to reactive oxygen species, GO:0019684 - photosynthesis, light reaction, GO:0009416 - response to light stimulus, GO:0009535 - chloroplast thylakoid membrane, GO:0009644 - response to high light intensity, GO:0009645 - response to low light intensity stimulus, GO:0010189 - vitamin E biosynthetic process	TO:0000495 - chlorophyll content, TO:0000075 - light sensitivity, TO:0000326 - leaf color	PO:0025034 - leaf 
18103	_	OsGT3	_	glycosyltransferase 3			12	a putative xylosyltransferase (XXT). LOC_Os12g05380.	 Biochemical character	Os12g0149300	LOC_Os12g05380.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane		
18104	_	RAR1, Os RAR1, OsRAR1	_				2	Q6EPW7.  a component in the OsRac1-mediated complex.	 Tolerance and resistance - Disease resistance	Os02g0535400	LOC_Os02g33180.1				GO:0008270 - zinc ion binding, GO:0051879 - Hsp90 protein binding, GO:0050832 - defense response to fungus, GO:0050821 - protein stabilization, GO:0042742 - defense response to bacterium, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0009626 - plant-type hypersensitive response, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0002679 - respiratory burst during defense response	TO:0000112 - disease resistance	
18105	_	OsHUS1, HUS1	_	rice HUS1 homolog, Hydroxyurea sensitive 1		Oshus1, Oshus1-1, Oshus1-2	4	LOC_Os04g44620. a member of the RAD9-RAD1-HUS1 (9-1-1) complex. GO:2000781: positive regulation of double-strand break repair. GO:2000003: positive regulation of DNA damage checkpoint.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0528400	LOC_Os04g44620.2, LOC_Os04g44620.1				GO:0005730 - nucleolus, GO:0000077 - DNA damage checkpoint, GO:0007131 - reciprocal meiotic recombination, GO:0030896 - checkpoint clamp complex, GO:0006302 - double-strand break repair, GO:0042138 - meiotic DNA double-strand break formation, GO:0006281 - DNA repair		
18106	CSLA11	OsCslA11, OsCSLA11	CELLULOSE SYNTHASE LIKE A11		CELLULOSE SYNTHASE LIKE A11		8	Q6YWK8. LOC_Os08g33740. GO:0071555: cell wall organization.	 Biochemical character	Os08g0434500/Os08g0434632					GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
18107	CSLC10	OsCslC10, OsCSLC10	CELLULOSE SYNTHASE LIKE C10		CELLULOSE SYNTHASE LIKE C10		7	LOC_Os07g03260. Q84Z01. GO:0071555: cell wall organization.	 Biochemical character	Os07g0124750	LOC_Os07g03260.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane		
18108	CSLE6	OsCslE6, OsCSLE6	CELLULOSE SYNTHASE LIKE E6		CELLULOSE SYNTHASE LIKE E6		9	LOC_Os09g30130. Q651X6.	 Biochemical character	Os09g0478300	LOC_Os09g30130.2, LOC_Os09g30130.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity		
18109	CSLF8	OsCslF8, OsCSLF8	CELLULOSE SYNTHASE LIKE F8		CELLULOSE SYNTHASE LIKE F8		7	Q84S18. LOC_Os10g20260.	 Biochemical character	Os07g0551700	LOC_Os07g36630.1				GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process, GO:0000139 - Golgi membrane, GO:0016760 - cellulose synthase (UDP-forming) activity		
18110	CSLF9	OsCslF9, OsCSLF9	CELLULOSE SYNTHASE LIKE F9		CELLULOSE SYNTHASE LIKE F9		7	Q7XHV0. LOC_Os07g36610.	 Biochemical character	Os07g0551600	LOC_Os07g36610.1				GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity		
18111	CSLH3	OsCslH3, OsCSLH3	CELLULOSE SYNTHASE LIKE H3		CELLULOSE SYNTHASE LIKE H3		4	Q7XUU0. LOC_Os04g35030.	 Biochemical character	Os04g0429600	LOC_Os04g35030.1				GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane		
18112	RLCK178	OsPti1a, OsRLCK178	RECEPTOR-LIKE CYTOPLASMIC KINASE 178	Pto-interacting protein 1a, Receptor-like Cytoplasmic Kinase 178	RECEPTOR-LIKE CYTOPLASMIC KINASE 178	ospti1a	5	an ortholog of tomato (Solanum lycopersicum) SlPti1. LOC_Os05g04520.	 Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os05g0135800	LOC_Os05g04520.1				GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009626 - plant-type hypersensitive response, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0031348 - negative regulation of defense response	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000112 - disease resistance	PO:0001170 - seed development stage , PO:0009010 - seed 
18113	RLCK33	OsPti1b, OsRLCK33	RECEPTOR-LIKE CYTOPLASMIC KINASE 33	Pto-interacting protein 1b, Receptor-like Cytoplasmic Kinase 33	RECEPTOR-LIKE CYTOPLASMIC KINASE 33		1	an ortholog of tomato (Solanum lycopersicum) SlPti1. LOC_Os01g21970.	 Reproductive organ - panicle,  Seed	Os01g0323100	LOC_Os01g21970.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18114	_	OsOxi1	_	AGC Kinase OsOxi1, oxidative signal inducible 1			1		 Tolerance and resistance - Disease resistance	Os04g0488700	LOC_Os04g41160.1				GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000074 - blast disease	
18115	_	OsUbc13, Ubc13, OsUBC47, UBC47	_	Ubiquitin conjugating enzyme 13, Ubiquitin-conjugating enzyme 47			1	closely related to AtUBC13B. LOC_Os01g48280. OsUBC47 in Zhang et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0673600	LOC_Os01g48280.2, LOC_Os01g48280.1				GO:0009739 - response to gibberellin stimulus, GO:0016881 - acid-amino acid ligase activity, GO:0006974 - response to DNA damage stimulus, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000166 - gibberellic acid sensitivity	PO:0001170 - seed development stage 
18116	_	OsCROC-1, CROC-1, CROC1, OsCROC1, OsUEV1B, UEV1B	_	Ubc-E2 variant 1B			12	required for formation of Lys63 polyubiquitylation and error-free DNA damage tolerance. Similar to CROC-1-like protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0605400	LOC_Os12g41220.1				GO:0016881 - acid-amino acid ligase activity, GO:0006974 - response to DNA damage stimulus	TO:0000164 - stress trait	
18117	_	OsMPK14, MPK14	_	mitogen-activated protein kinase 14			5	Q75KK8.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os05g0143500	LOC_Os05g05160.1				GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding	TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity	
18118	_	OsB12D1	_	B12D-like protein 1			7	LOC_Os07g41350.	 Tolerance and resistance - Stress tolerance	Os07g0604700	LOC_Os07g41350.1				GO:0009845 - seed germination, GO:0009413 - response to flooding	TO:0000114 - flooding related trait, TO:0000280 - seedling vigor	
18119	_	OsEnS-48	_	B12D-like protein, endosperm-specific gene 48			3	LOC_Os03g40440. one of six OsB12Ds (B12D-like proteins).		Os03g0601500	LOC_Os03g40440.1						
18120	_		_	B12D-like protein			6	LOC_Os06g13680. one of six OsB12Ds (B12D-like proteins).		Os06g0246000	LOC_Os06g13680.1						
18121	_		_	B12D-like protein			7	LOC_Os07g17310. one of six OsB12Ds (B12D-like proteins).		Os07g0274400	LOC_Os07g17310.1						
18122	_		_	B12D-like protein			7	LOC_Os07g17330. one of six OsB12Ds (B12D-like proteins).		Os07g0274700	LOC_Os07g17330.1						
18123	_		_	B12D-like protein			7	LOC_Os07g41340. one of six OsB12Ds (B12D-like proteins).		Os07g0604600	LOC_Os07g41340.1						
18124	_	OsNuc37	_	nuclear 37kDa endonuclease, nuclear endonucleases of 37 kDa, endonuclease OsNuc37					 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0012501 - programmed cell death, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
18125	_	OsCyt20	_	cytoplasmic 20kDa endonuclease, cytoplasmic endonucleases of 20kDa, endonuclease OsCyt20					 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress, GO:0012501 - programmed cell death	TO:0006001 - salt tolerance	
18126	_		_	cystatin			1	Q5N806.	 Biochemical character,  Tolerance and resistance	Os01g0915200	LOC_Os01g68660.1				GO:0006952 - defense response, GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region		
18127	_		_	glucanase			7		 Biochemical character,  Tolerance and resistance	Os07g0168600	LOC_Os07g07340.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006952 - defense response		
18128	PUT3	OsPUT3, OsPUT3.1, OsPAR1, OsLAT5	POLYAMINE UPTAKE TRANSPORTER 3	PA uptake transporter 3, polyamine uptake transporter 3, paraquat resistant1, paraquat resistant 1			3	OsPAR1 functions similar to PAR1 in Arabidopsis in the regulation of paraquat sensitivity (Li et al. 2013). LOC_Os03g37984. GO:1900055: regulation of leaf senescence.	 Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - Heading date	Os03g0576900	LOC_Os03g37984.5, LOC_Os03g37984.4, LOC_Os03g37984.3, LOC_Os03g37984.2, LOC_Os03g37984.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015848 - spermidine transport, GO:0010150 - leaf senescence, GO:0009507 - chloroplast, GO:2000028 - regulation of photoperiodism, flowering, GO:0015606 - spermidine transmembrane transporter activity	TO:0002616 - flowering time, TO:0000249 - leaf senescence	
18129	_	FATB1, OsFATB1	_				6	acyl-ACP thioesterase. one of the VLCFA (very longchain fatty acids) synthesis-related genes. wax synthesis related gene.	 Biochemical character	Os06g0143400	LOC_Os06g05130.1				GO:0006633 - fatty acid biosynthetic process, GO:0016790 - thiolester hydrolase activity		
18130	_	LACS1, OsLACS1	_	Long-chain acyl-CoA synthetase 1			12	acyl-CoA synthetase. one of the VLCFA (very longchain fatty acids) synthesis-related genes.	 Biochemical character	Os12g0168700	LOC_Os12g07110.2, LOC_Os12g07110.1				GO:0003824 - catalytic activity		
18131	_	CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6	_	eceriferum6, eceriferum 6, cuticular 1, wax crystal-sparse leaf 4, beta-ketoacyl-coenzyme A synthase 6, beta-ketoacyl-CoA synthase 6		wsl4, wsl4-1, wsl4-2	3	LOC_Os03g12030. one of the beta-ketoacyl CoA synthase genes.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os03g0220100	LOC_Os03g12030.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016020 - membrane, GO:0042761 - very-long-chain fatty acid biosynthetic process, GO:0010025 - wax biosynthetic process, GO:0006633 - fatty acid biosynthetic process	TO:0000346 - tiller number, TO:0000207 - plant height	PO:0025386 - cuticular wax 
18132	_	KCS1, OsKCS1	_				5	one of the beta-ketoacyl CoA synthase genes.	 Biochemical character	Os05g0568000	LOC_Os05g49290.3, LOC_Os05g49290.2, LOC_Os05g49290.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016020 - membrane, GO:0006633 - fatty acid biosynthetic process		
18133	_	FDH2, OsFDH2	_				6	one of the beta-ketoacyl CoA synthase genes. Q67U69.	 Biochemical character	Os06g0486900	LOC_Os06g29220.1				GO:0051287 - NAD or NADH binding, GO:0005739 - mitochondrion, GO:0008863 - formate dehydrogenase activity, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor		
18134	_	KCR1, OsKCR1	_	beta-ketoacyl-CoA reductase 1			4	wax synthesis related gene.	 Biochemical character	Os04g0483500	LOC_Os04g40730.1				GO:0016491 - oxidoreductase activity		
18135	_	CER10, OsCER10	_	eceriferum10, eceriferum 10			1	trans-2-enoyl-CoA reductase. wax synthesis related gene.	 Biochemical character	Os01g0150000	LOC_Os01g05670.1				GO:0005886 - plasma membrane, GO:0006633 - fatty acid biosynthetic process, GO:0016126 - sterol biosynthetic process, GO:0019166 - trans-2-enoyl-CoA reductase (NADPH) activity, GO:0009922 - fatty acid elongase activity, GO:0009923 - fatty acid elongase complex, GO:0010025 - wax biosynthetic process, GO:0007030 - Golgi organization, GO:0009651 - response to salt stress, GO:0046520 - sphingoid biosynthetic process, GO:0016021 - integral to membrane, GO:0006816 - calcium ion transport		
18136	CYP86A7-1	CYP86A7-1, OsCYP86A7-1	P-450 86A7-1	Cytochrome P450 86A7-1	P-450 86A7-1		4		 Biochemical character	Os04g0560100	LOC_Os04g47250.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
18137	CYP86A7-2	CYP86A7-2, OsCYP86A7-2	P-450 86A7-2	Cytochrome P450 86A7-2, fatty acid omega-hydroxylase	P-450 86A7-2		1		 Biochemical character	Os01g0854800	LOC_Os01g63540.1				GO:0006631 - fatty acid metabolic process, GO:0000041 - transition metal ion transport, GO:0005506 - iron ion binding, GO:0005773 - vacuole, GO:0009055 - electron carrier activity, GO:0010345 - suberin biosynthetic process, GO:0016021 - integral to membrane, GO:0018685 - alkane 1-monooxygenase activity		
18138	CYP86A7-3	CYP86A7-3, OsCYP86A7-3	P-450 86A7-3	Cytochrome P450 86A7-3	P-450 86A7-3		10		 Biochemical character	Os10g0486000	LOC_Os10g34470.1				GO:0008081 - phosphoric diester hydrolase activity, GO:0046872 - metal ion binding		
18139	_	GPDH1, OsGPDH1-1	_	glycerol-3-phosphate dehydrogenase 1			5	Q65X70.	 Biochemical character	Os05g0495700	LOC_Os05g41590.1				GO:0046168 - glycerol-3-phosphate catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0051287 - NAD or NADH binding, GO:0004367 - glycerol-3-phosphate dehydrogenase (NAD+) activity, GO:0009331 - glycerol-3-phosphate dehydrogenase complex		
18140	_	GPDH2, OsGPDH1-2	_	glycerol-3-phosphate dehydrogenase 2			1	Q8S0G4.	 Biochemical character	Os01g0939600	LOC_Os01g71280.1				GO:0051287 - NAD or NADH binding, GO:0009331 - glycerol-3-phosphate dehydrogenase complex, GO:0005975 - carbohydrate metabolic process, GO:0004367 - glycerol-3-phosphate dehydrogenase (NAD+) activity, GO:0046168 - glycerol-3-phosphate catabolic process		
18141	_	MAH1, OsMAH1, OsCYP96B3, CYP96B3	_	midchain alkane hydroxylase 1, Cytochrome P450 96B5, P-450 96B5			3	one of wax metabolism-related genes. LOC_Os03g04650.	 Biochemical character	Os03g0140100	LOC_Os03g04650.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
18142	_	RGG1	_	heterotrimeric G-protein gamma subunit 1, G protein gamma1 subunit, rice G protein gamma subunit 1, G protein gamma subunit 1			3	AB120662. GU111573. B8AN27. Q75WU1.	 Tolerance and resistance - Stress tolerance	Os03g0635100	LOC_Os03g43480.1				GO:0004871 - signal transducer activity, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0048527 - lateral root development, GO:0018345 - protein palmitoylation, GO:0009845 - seed germination, GO:0018342 - protein prenylation, GO:0000139 - Golgi membrane, GO:0005834 - heterotrimeric G-protein complex, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0005525 - GTP binding, GO:0010541 - acropetal auxin transport, GO:0009817 - defense response to fungus, incompatible interaction	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
18143	RGG2		RICE G PROTEIN GAMMA SUBUNIT 2	heterotrimeric G-protein gamma subunit 2, G protein gamma2 subunit, rice G protein gamma subunit 2, G protein gamma subunit 2, type B heterotrimeric G protein c subunit	RICE G PROTEIN GAMMA SUBUNIT 2	zrgg2-1, zrgg2-2, nrgg2-1	2		 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0137800 	LOC_Os02g04520.1, LOC_Os02g04520.2				GO:0030308 - negative regulation of cell growth, GO:0009740 - gibberellic acid mediated signaling, GO:0004871 - signal transducer activity, GO:0005834 - heterotrimeric G-protein complex, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000397 - grain size, TO:0000371 - yield trait, TO:0000145 - internode length, TO:0000207 - plant height, TO:0000592 - 1000-dehulled grain weight, TO:0000457 - total biomass yield, TO:0000449 - grain yield per plant, TO:0000040 - panicle length, TO:0000342 - panicle axis angle, TO:0002730 - grain shape	
18144	_	OsCAF1A, CAF1A, OsCAF1-12	_	"CCR4-associated factor 1A, carbon catabolite
repressor 4-associated factor 1A, CCR4-associated factor 1-12"			8	LOC_Os08g34170. a key component of  the CCR4-NOTcomplex.	 Tolerance and resistance - Stress tolerance	Os08g0440300	LOC_Os08g34170.1				GO:0006995 - cellular response to nitrogen starvation, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18145	_	OsCAF1B, OsCAF1-5	_	"CCR4-associated factor 1B, carbon catabolite
repressor 4-associated factor 1B, CCR4-associated factor 1-5"			4	LOC_Os04g58810. a key component of  the CCR4-NOTcomplex.	 Tolerance and resistance - Stress tolerance	Os04g0684900	LOC_Os04g58810.1				GO:0005634 - nucleus, GO:0006995 - cellular response to nitrogen starvation, GO:0003676 - nucleic acid binding		
18146	_	OsCAF1G, CAF1G, OsCAF1-13	_	"CCR4-associated factor 1G, carbon catabolite
repressor 4-associated factor 1G, CCR4-associated factor 1-13"			9	LOC_Os09g24990. a key component of  the CCR4-NOTcomplex.	 Tolerance and resistance - Stress tolerance	Os09g0416800	LOC_Os09g24990.2, LOC_Os09g24990.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0006995 - cellular response to nitrogen starvation		
18147	_	OsCAF1H, CAF1H, OsCAF1-1	_	"CCR4-associated factor 1H, carbon catabolite
repressor 4-associated factor 1H, CCR4-associated factor 1-1"			2	LOC_Os02g55300. a key component of  the CCR4-NOTcomplex.	 Tolerance and resistance	Os02g0796300	LOC_Os02g55300.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0006995 - cellular response to nitrogen starvation		
18148	_	OsHSP70, hsp70, OsMed37_4, Med37_4	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD, Mediator 37_4			3	LOC_Os03g60620.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0821100	LOC_Os03g60620.1				GO:0009615 - response to virus, GO:0006950 - response to stress, GO:0005524 - ATP binding	TO:0000148 - viral disease resistance	
18149	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			1	LOC_Os01g52290.		Os01g0721000	LOC_Os01g52290.1				GO:0005524 - ATP binding		
18150	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			3	LOC_Os03g16880.	 Tolerance and resistance - Stress tolerance	Os03g0276800	LOC_Os03g16880.1				GO:0009615 - response to virus, GO:0005524 - ATP binding, GO:0006950 - response to stress		
18151	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			11	LOC_Os11g08445.			LOC_Os11g08445				GO:0009615 - response to virus, GO:0005524 - ATP binding		
18152	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			11	LOC_Os11g08460.	 Reproductive organ	Os11g0187600/Os11g0187700					GO:0005524 - ATP binding		PO:0020094 - plant egg cell 
18153	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			11	LOC_Os11g08470.		Os11g0187800	LOC_Os11g08470.1				GO:0005524 - ATP binding, GO:0009615 - response to virus		
18154	MC1	OsMC1	METACASPASE 1	Metacaspase 1	METACASPASE 1		3		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0388900	LOC_Os03g27120.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0004197 - cysteine-type endopeptidase activity, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
18155	MC2	OsMC2	METACASPASE 2	Metacaspase 2	METACASPASE 2		3	CT835282, CT835269.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0389400/Os03g0389501	LOC_Os03g27210.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0007568 - aging, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	
18156	MC3	OsMC3, OsSTA102	METACASPASE 3	Metacaspase 3	METACASPASE 3		3	a mature anther-preferentially expressed gene.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0389000	LOC_Os03g27170.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0050832 - defense response to fungus	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	PO:0009066 - anther 
18157	MC4	OsMC4	METACASPASE 4	Metacaspase 4	METACASPASE 4		5		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0496400	LOC_Os05g41660.1				GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0004197 - cysteine-type endopeptidase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000074 - blast disease	
18158	MC6	OsMC6	METACASPASE 6	Metacaspase 6	METACASPASE 6		1		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0799900	LOC_Os01g58580.1				GO:0009737 - response to abscisic acid stimulus, GO:0002213 - defense response to insect, GO:0004197 - cysteine-type endopeptidase activity, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0050832 - defense response to fungus	TO:0000261 - insect damage resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity	
18159	MC7	OsMC7	METACASPASE 7	Metacaspase 7	METACASPASE 7		11	LOC_Os11g04010.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0134700	LOC_Os11g04010.1				GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0004197 - cysteine-type endopeptidase activity, GO:0007568 - aging, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18160	MC8	OsMC8	METACASPASE 8	Metacaspase 8	METACASPASE 8		3		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0389100	LOC_Os03g27190.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0007568 - aging, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease	
18161	CPD2	OsCPD2, CYP90A4, CYP90A4/OsCPD2	CPD2	CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM 2, Cytochrome P450 90A4	CYTOCHROME P450 90A4		12	one of the orthologs to the Arabidopsis CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM (CPD) gene.	 Biochemical character	Os12g0139300	LOC_Os12g04480.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0009637 - response to blue light, GO:0016132 - brassinosteroid biosynthetic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000159 - blue light sensitivity, TO:0002676 - brassinosteroid content	
18163	DEX1	Os DEX1, OsDEX1	DEFECTIVE IN EXINE PATTERN FORMATION 1	Defective in Exine Formation 1		osdex1, osdex1-1, osdex1-2, osdex1-3, osdex1-4	3	a homolog of Arabidopsis DEX1. LOC_Os03g61050. GO:2000939: regulation of plant-type cell wall cellulose catabolic process.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0825700 	LOC_Os03g61050.1				GO:0005509 - calcium ion binding, GO:0005783 - endoplasmic reticulum, GO:0009555 - pollen development, GO:0010208 - pollen wall assembly, GO:0010383 - cell wall polysaccharide metabolic process	TO:0000437 - male sterility	PO:0001004 - anther development stage 
18164	NEF1	Os NEF1, OsNEF1	NO EXINE FORMATION 1	NO EXINE FORMATION1, no exine formation 1			11	LOC_Os11g32470. a homolog of Arabidopsis NEF1.	 Tolerance and resistance - Stress tolerance	Os11g0528200 	LOC_Os11g32470.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
18166	_	OsRCI2-5	_	rare cold-inducible 2-5			3	RCI2 (rare cold-inducible 2) family gene. LOC_Os03g17790.	 Tolerance and resistance - Stress tolerance	Os03g0286900	LOC_Os03g17790.1				GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
18167	_	OsRCI2-1	_	rare cold-inducible 2-1			1	RCI2 (rare cold-inducible 2) family gene. LOC_Os01g18390.			LOC_Os01g18390						
18168	_	OsRCI2-2	_	rare cold-inducible 2-2			1	RCI2 (rare cold-inducible 2) family gene. AP002070 (PAC clone P0511C01): 38352-38672.									
18169	_	OsRCI2-3	_	rare cold-inducible 2-3			3	RCI2 (rare cold-inducible 2) family gene. LOC_Os03g25460.		Os03g0370600	LOC_Os03g25460.1				GO:0016021 - integral to membrane, GO:0009409 - response to cold		
18170	_	OsRCI2-4	_	rare cold-inducible 2-4			3	RCI2 (rare cold-inducible 2) family gene. AAAA01010593 (Obsolete) : 136011-135776.									
18171	_	OsRCI2-7	_	rare cold-inducible 2-7			5	RCI2 (rare cold-inducible 2) family gene. LOC_Os05g03130. AU088623.		Os05g0122700	LOC_Os05g03130.1				GO:0016021 - integral to membrane		
18172	_	OsRCI2-8	_	rare cold-inducible 2-8			6	RCI2 (rare cold-inducible 2) family gene. LOC_Os06g08564.		Os06g0184800	LOC_Os06g08564.1				GO:0016021 - integral to membrane		
18173	_	OsRCI2-9	_	rare cold-inducible 2-9			6	RCI2 (rare cold-inducible 2) family gene. LOC_Os06g44220.		Os06g0651900	LOC_Os06g44220.1				GO:0016021 - integral to membrane		
18174	_	OsRCI2-11, OSR8, osr8	_	rare cold-inducible 2-11			9	RCI2 (rare cold-inducible 2) family gene. LOC_Os09g38560. Q9LRI7. AB030211.		Os09g0558100	LOC_Os09g38560.1				GO:0016021 - integral to membrane		
18175	_	OsRCI2-12	_	rare cold-inducible 2-12			9	RCI2 (rare cold-inducible 2) family gene. AACV01019593: 5757-6057.									
18176	CIPK32	OsCIPK32	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 32	CBL-interacting protein kinase 32	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 32		12	LOC_Os12g03810. Q2QY53.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0132200	LOC_Os12g03810.3, LOC_Os12g03810.2, LOC_Os12g03810.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
18177	CIPK33	OsCIPK33	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 33	CBL-interacting protein kinase 33	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 33		11	LOC_Os11g03970. Q2RAX3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0134300/Os11g0134232 					GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0007165 - signal transduction	TO:0006001 - salt tolerance	
18178	_	OsRZFP34, OsRFP1, RZFP34, RFP1	_	RING zinc-finger protein 34, RING finger protein 1		osrzfp34	1	AY574990. GO:1990069: stomatal opening. TO:0020097: stomatal opening. the closest paralog of OsSRFP1. LOC_Os01g52110.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0719100	LOC_Os01g52110.9, LOC_Os01g52110.8, LOC_Os01g52110.7, LOC_Os01g52110.5, LOC_Os01g52110.4, LOC_Os01g52110.3, LOC_Os01g52110.2, LOC_Os01g52110.1				GO:0043266 - regulation of potassium ion transport, GO:0019722 - calcium-mediated signaling, GO:0009738 - abscisic acid mediated signaling, GO:0008270 - zinc ion binding, GO:0005513 - detection of calcium ion		
18179	_	OsABA2, ABA2	_	ABA DEFICIENT 2			3	a xanthoxin dehydrogenase (XanDH).	 Biochemical character	Os03g0810800	LOC_Os03g59610.1				GO:0010182 - sugar mediated signaling, GO:0009688 - abscisic acid biosynthetic process, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0009750 - response to fructose stimulus, GO:0005829 - cytosol, GO:0006561 - proline biosynthetic process, GO:0009414 - response to water deprivation, GO:0010301 - xanthoxin dehydrogenase activity	TO:0002667 - abscisic acid content	
18180	SAP2	OsSAP2	STRESS ASSOCIATED PROTEIN GENE 2	stress-associated protein 2	STRESS ASSOCIATED PROTEIN 2		1	Q942F8. LOC_Os01g52030.	 Tolerance and resistance - Stress tolerance	Os01g0718000	LOC_Os01g52030.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0003677 - DNA binding	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18181	SAP3	OsSAP3	STRESS ASSOCIATED PROTEIN GENE 3	stress-associated protein 3	STRESS ASSOCIATED PROTEIN 3		1	Q5JN07. LOC_Os01g56040.	 Tolerance and resistance - Stress tolerance	Os01g0765900	LOC_Os01g56040.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006950 - response to stress	TO:0000164 - stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18182	SAP4	OsSAP4	STRESS ASSOCIATED PROTEIN GENE 4	stress-associated protein 4	STRESS ASSOCIATED PROTEIN 4		2	Q6H7P8. LOC_Os02g10200.	 Tolerance and resistance - Stress tolerance	Os02g0195600	LOC_Os02g10200.2, LOC_Os02g10200.1				GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0006950 - response to stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000164 - stress trait, TO:0000276 - drought tolerance	
18183	SAP5	OsSAP5	STRESS ASSOCIATED PROTEIN GENE 5	stress-associated protein 5	STRESS ASSOCIATED PROTEIN 5		2	Q6H754. LOC_Os02g32840.	 Tolerance and resistance - Stress tolerance	Os02g0530300	LOC_Os02g32840.1				GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0006950 - response to stress, GO:0009651 - response to salt stress, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000164 - stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
18184	SAP6	OsSAP6	STRESS ASSOCIATED PROTEIN GENE 6	stress-associated protein 6	STRESS ASSOCIATED PROTEIN 6		3	Q852K5. LOC_Os03g57890.	 Tolerance and resistance - Stress tolerance	Os03g0792900	LOC_Os03g57890.3, LOC_Os03g57890.2, LOC_Os03g57890.1				GO:0009751 - response to salicylic acid stimulus, GO:0006950 - response to stress, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000164 - stress trait	
18185	SAP7	OsSAP7, OsiSAP7	STRESS ASSOCIATED PROTEIN GENE 7	stress-associated protein 7, Stress associated protein 7	STRESS ASSOCIATED PROTEIN 7		3	Q852K6. LOC_Os03g57900.	 Tolerance and resistance - Stress tolerance	Os03g0793000	LOC_Os03g57900.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006950 - response to stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0004842 - ubiquitin-protein ligase activity, GO:0009788 - negative regulation of abscisic acid mediated signaling	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000164 - stress trait	
18186	SAP10	OsSAP10	STRESS ASSOCIATED PROTEIN GENE 10	stress-associated protein 10	STRESS ASSOCIATED PROTEIN 10		7	Q69LE0. LOC_Os07g07400.	 Tolerance and resistance - Stress tolerance	Os07g0169500	LOC_Os07g07400.1				GO:0006950 - response to stress, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009751 - response to salicylic acid stimulus, GO:0042542 - response to hydrogen peroxide	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000164 - stress trait	
18187	SAP12	OsSAP12	STRESS ASSOCIATED PROTEIN GENE 12	stress-associated protein 12	STRESS ASSOCIATED PROTEIN 12		8	Q6Z541. LOC_Os08g33880.	 Tolerance and resistance - Stress tolerance	Os08g0436400	LOC_Os08g33880.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0006950 - response to stress, GO:0042542 - response to hydrogen peroxide	TO:0000164 - stress trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18188	SAP13	OsSAP13	STRESS ASSOCIATED PROTEIN GENE 13	stress-associated protein 13	STRESS ASSOCIATED PROTEIN 13		1	Q5JLA7. LOC_Os01g51990.	 Tolerance and resistance - Stress tolerance	Os01g0717601	LOC_Os01g51990.1				GO:0009414 - response to water deprivation, GO:0006950 - response to stress, GO:0008270 - zinc ion binding, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000164 - stress trait, TO:0006001 - salt tolerance	
18189	SAP14	OsSAP14	STRESS ASSOCIATED PROTEIN GENE 14	stress-associated protein 14	STRESS ASSOCIATED PROTEIN 14		3	Q852K8. LOC_Os03g57920.	 Tolerance and resistance - Stress tolerance	Os03g0793300	LOC_Os03g57920.1				GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000164 - stress trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18190	SAP15	OsSAP15	STRESS ASSOCIATED PROTEIN GENE 15	stress-associated protein 15	STRESS ASSOCIATED PROTEIN 15		5	Q0DJC7. LOC_Os05g23470.	 Tolerance and resistance - Stress tolerance	Os05g0299700	LOC_Os05g23470.3, LOC_Os05g23470.2, LOC_Os05g23470.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0008270 - zinc ion binding, GO:0006950 - response to stress	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000164 - stress trait, TO:0006001 - salt tolerance	
18191	SAP17	OsSAP17	STRESS ASSOCIATED PROTEIN GENE 17	stress-associated protein 17	STRESS ASSOCIATED PROTEIN 17		9	Q6H595. LOC_Os09g21710.	 Tolerance and resistance - Stress tolerance	Os09g0385700	LOC_Os09g21710.1				GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0009407 - toxin catabolic process, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009751 - response to salicylic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0042538 - hyperosmotic salinity response, GO:0010583 - response to cyclopentenone, GO:0010363 - regulation of plant-type hypersensitive response, GO:0010286 - heat acclimation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006612 - protein targeting to membrane, GO:0008270 - zinc ion binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000164 - stress trait	
18192	SAP18	OsSAP18	STRESS ASSOCIATED PROTEIN GENE 18	stress-associated protein 18	STRESS ASSOCIATED PROTEIN 18		7	P0C282. LOC_Os07g07370.	 Tolerance and resistance - Stress tolerance	Os07g0169100	LOC_Os07g07370.1				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0006950 - response to stress	TO:0006001 - salt tolerance, TO:0000164 - stress trait, TO:0000276 - drought tolerance	
18194	_	NolmiR-23	_				2	One of 23 novel conserved miRNAs. target: LOC_Os07g22930. NolmiR-23 was located within the exon of AK121865 (LOC_Os02g43519, Os02g0651500) (Yang et al. 2014).									
18195	_	NolmiR-45	_					One of 23 novel conserved miRNAs.									
18196	_	NolmiR-50	_					One of 23 novel conserved miRNAs. target: Os08g06280 (LSD1 zinc finger domain containing protein, LSD1). NolmiR-50 was negatively correlated with its target Os08g06280 from seedling to booting (Yang et al. 2014).									
18197	_	NolmiR-53	_					One of 23 novel conserved miRNAs.									
18198	_	NolmiR-56	_					One of 23 novel conserved miRNAs. target: LOC_Os03g25650. NolmiR-56 displayed a consistent negative correlation with its target gene (Os03g25650) during the seedling to booting stages (Yang et al. 2014).									
18199	_	NolmiR-58	_					One of 23 novel conserved miRNAs.									
18200	_	NolmiR-62	_					One of 23 novel conserved miRNAs.									
18201	_	NolmiR-63	_					One of 23 novel conserved miRNAs.									
18202	_	NolmiR-74	_					One of 23 novel conserved miRNAs.									
18203	_	NolmiR-86	_					One of 23 novel conserved miRNAs. target: LOC_Os06g45510 (Yang et al. 2014).									
18204	_	NolmiR-95	_					One of 23 novel conserved miRNAs.									
18205	_	NolmiR-101	_					One of 23 novel conserved miRNAs.									
18206	_	NolmiR-105	_					One of 23 novel conserved miRNAs.									
18207	_	NolmiR-112	_					One of 23 novel conserved miRNAs.									
18208	_	NolmiR-142	_					One of 23 novel conserved miRNAs.									
18209	_	NolmiR-150	_					One of 23 novel conserved miRNAs.									
18210	_	NolmiR-162	_					One of 23 novel conserved miRNAs.									
18211	_	NolmiR-185	_					One of 23 novel conserved miRNAs.									
18212	_	NolmiR-230	_					One of 23 novel conserved miRNAs. target: LOC_Os12g01449 (Yang et al. 2014).									
18213	_	NolmiR-349	_					One of 23 novel conserved miRNAs. target: LOC_Os03g12570 (Yang et al. 2014).									
18214	_	NolmiR-432	_					One of 23 novel conserved miRNAs.									
18215	_	OsVTE2, VTE2, SGD1, RTD1, OsHPT, HPT	_	VITAMIN E DEFICIENT 2, small grain and dwarf1, small grain and dwarf 1, Rice tocopherol de chancy 1, homogentisate phytyltransferase	_	sgd1, sgd1-1, sgd1-2, rtd1	6	LOC_Os06g44840. B7FA90. vitamin E biosynthetic enzyme. GO:0071555: cell wall organization. GO:0099402: plant organ development. TO:0000975: grain width.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance	Os06g0658900	LOC_Os06g44840.2, LOC_Os06g44840.1				GO:0009826 - unidimensional cell growth, GO:0000096 - sulfur amino acid metabolic process, GO:0006546 - glycine catabolic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0006733 - oxidoreduction coenzyme metabolic process, GO:0015994 - chlorophyll metabolic process, GO:0016021 - integral to membrane, GO:0019216 - regulation of lipid metabolic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019748 - secondary metabolic process, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0009739 - response to gibberellin stimulus, GO:0030154 - cell differentiation, GO:0031347 - regulation of defense response, GO:0031408 - oxylipin biosynthetic process, GO:0044272 - sulfur compound biosynthetic process, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0006979 - response to oxidative stress, GO:0009535 - chloroplast thylakoid membrane, GO:0009416 - response to light stimulus, GO:0009266 - response to temperature stimulus, GO:0009117 - nucleotide metabolic process, GO:0009108 - coenzyme biosynthetic process, GO:0009106 - lipoate metabolic process, GO:0009072 - aromatic amino acid family metabolic process, GO:0008652 - cellular amino acid biosynthetic process, GO:0033231 - carbohydrate export, GO:0009740 - gibberellic acid mediated signaling, GO:0009695 - jasmonic acid biosynthetic process, GO:0009915 - phloem loading, GO:0009965 - leaf morphogenesis, GO:0010176 - homogentisate phytyltransferase activity, GO:0010189 - vitamin E biosynthetic process	TO:0000592 - 1000-dehulled grain weight, TO:0000303 - cold tolerance, TO:0000346 - tiller number, TO:0000166 - gibberellic acid sensitivity, TO:0000340 - total soluble sugar content, TO:0000040 - panicle length, TO:0000565 - spikelets per panicle length, TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000382 - 1000-seed weight, TO:0006032 - panicle size, TO:0002637 - leaf size, TO:0000145 - internode length, TO:0000456 - spikelet number, TO:0000152 - panicle number, TO:0000435 - seed longevity, TO:0002657 - oxidative stress	PO:0006001 - phyllome 
18216	_	OsVTE3	_	VITAMIN E DEFICIENT 3			7	Q6ZLD3. vitamin E biosynthetic enzyme.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0179300	LOC_Os07g08200.1				GO:0009706 - chloroplast inner membrane, GO:0010189 - vitamin E biosynthetic process, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0006979 - response to oxidative stress, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0010236 - plastoquinone biosynthetic process, GO:0016021 - integral to membrane, GO:0051741 - 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity, GO:0019761 - glucosinolate biosynthetic process	TO:0002657 - oxidative stress	
18217	_	OsVTE4, OsgammaTMT, gammaTMT	_	VITAMIN E DEFICIENT 4, gamma tocopherol methyltransferase		TMT-1, TMT-2	2	Q6ZIK0. vitamin E biosynthetic enzyme.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0701600	LOC_Os02g47310.1				GO:0051741 - 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity, GO:0006979 - response to oxidative stress, GO:0009507 - chloroplast, GO:0010189 - vitamin E biosynthetic process, GO:0050342 - tocopherol O-methyltransferase activity	TO:0002657 - oxidative stress	
18218	_	OsVTE5	_	VITAMIN E DEFICIENT 5			4	Q7XR51. vitamin E biosynthetic enzyme.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0670700	LOC_Os04g57500.1				GO:0010189 - vitamin E biosynthetic process, GO:0031969 - chloroplast membrane, GO:0010276 - phytol kinase activity, GO:0006979 - response to oxidative stress, GO:0016021 - integral to membrane	TO:0002657 - oxidative stress	
18219	_	OsNug2	_	Nuclear/Nucleolar GTPase 2			3	LOC_Os03g22890.	 Biochemical character	Os03g0352400	LOC_Os03g22890.2, LOC_Os03g22890.1				GO:0042254 - ribosome biogenesis, GO:0003924 - GTPase activity, GO:0005730 - nucleolus		
18220	_		_	import-1b subunit			5	LOC_Os05g06350. Q9SLX0.		Os05g0155500					GO:0005737 - cytoplasm, GO:0008565 - protein transporter activity, GO:0006606 - protein import into nucleus		
18221	_	OsSTK1	_	serine/threonine kinase 1			1	LOC_Os01g61620.		Os01g0832900	LOC_Os01g61620.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18222	_	OsGIRL1, OsGIRL1-1, OsGIRL1-2, OsGIRL1-3	_	gamma-ray induced LRR-RLK1, gamma-ray induced Leucine-rich repeat receptor-like kinase 1			2	LOC_Os02g12440.	 Tolerance and resistance - Stress tolerance	Os02g0215900	LOC_Os02g12440.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0010332 - response to gamma radiation	TO:0000432 - temperature response trait, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000161 - radiation response trait, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
18223	RLCK25	OsRLCK25	RECEPTOR-LIKE CYTOPLASMIC KINASE 25	Receptor-like Cytoplasmic Kinase 25	RECEPTOR-LIKE CYTOPLASMIC KINASE 25		1	LOC_Os01g05960. one of the leucine-rich repeatreceptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0152800	LOC_Os01g05960.1				GO:0010332 - response to gamma radiation, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane	TO:0000161 - radiation response trait, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18224	_		_				5	LOC_Os05g16824. one of the leucine-rich repeatreceptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Stress tolerance	Os05g0257100	LOC_Os05g16824.5, LOC_Os05g16824.4, LOC_Os05g16824.3, LOC_Os05g16824.2, LOC_Os05g16824.1				GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
18225	_		_				5	LOC_Os05g24010. one of the leucine-rich repeatreceptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Stress tolerance	Os05g0305900	LOC_Os05g24010.3, LOC_Os05g24010.2, LOC_Os05g24010.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010332 - response to gamma radiation, GO:0005524 - ATP binding	TO:0000161 - radiation response trait	
18226	_		_				5	LOC_Os05g39410. one of the leucine-rich repeatreceptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Stress tolerance	Os05g0471000	LOC_Os05g39410.3, LOC_Os05g39410.2, LOC_Os05g39410.1				GO:0005524 - ATP binding, GO:0010332 - response to gamma radiation, GO:0016021 - integral to membrane	TO:0000161 - radiation response trait	
18227	_		_				6	LOC_Os06g36320. one of the leucine-rich repeatreceptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Stress tolerance	Os06g0557700	LOC_Os06g36320.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010332 - response to gamma radiation, GO:0005524 - ATP binding	TO:0000161 - radiation response trait	
18228	_	ROS1C, ROS1c, DME2	_	REPRESSOR OF SILENCING 1c			5	ROS1 ortholog. LOC_Os05g37350. 5-methylcytosine DNA glycosylase.	 Biochemical character	Os05g0445900	LOC_Os05g37350.1				GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0006281 - DNA repair		
18229	_	ROS1D, ROS1d	_	REPRESSOR OF SILENCING 1d			5	ROS1 ortholog. LOC_Os05g37410.	 Biochemical character	Os05g0446550/Os05g0446600							
18230	_	DML3a	_	DEMETER-LIKE 3a			2	LOC_Os02g29380. DML3 ortholog.	 Biochemical character	Os02g0496500	LOC_Os02g29380.1				GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0006281 - DNA repair		
18231	_	DML3b	_	DEMETER-LIKE 3b			4	LOC_Os04g28860. DML3 ortholog.	 Biochemical character	Os04g0357850	LOC_Os04g28860.1						
18232	_		_	(Expressed protein)			1	LOC_Os01g12330. metabolite: Smiglaside C.	 Biochemical character	Os01g0223300	LOC_Os01g12330.1						
18233	UGT706D1	UGT, OsUGT706D1	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706D1	UDP-dependent glucosyltransferase 706D1, flavone 7-O-glucosyltransferase	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706D1		1	LOC_Os01g53460. metabolite: Apigenin 7-O-glucoside.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0736300	LOC_Os01g53460.1				GO:0033303 - quercetin O-glucoside biosynthetic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0033330 - kaempferol O-glucoside biosynthetic process, GO:0010224 - response to UV-B	TO:0000601 - UV-B light sensitivity	
18234	_		_	Polyphenol oxidase			1	LOC_Os01g58070. metabolite: N-sinapoylputrescine.	 Biochemical character	Os01g0793100	LOC_Os01g58070.1				GO:0046872 - metal ion binding		
18235	ATASE1	Atase1, OsATASE1	AMIDO PHOSPHORIBOSYLTRANSFERASE 1	APB transferase, amido phosphoribosyltransferase 1	AMIDO PHOSPHORIBOSYLTRANSFERASE 1		1	LOC_Os01g65260. metabolite: Threonyl carbamoyl adenosine.	 Biochemical character	Os01g0873100	LOC_Os01g65260.1						
18236	_		_	DOPA dioxygenase			1	LOC_Os01g65680. metabolite: Arabidopyl ketoadipic acid.	 Biochemical character	Os01g0878800	LOC_Os01g65680.1				GO:0006725 - cellular aromatic compound metabolic process, GO:0008198 - ferrous iron binding, GO:0016701 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, GO:0008270 - zinc ion binding		
18237	_	UGT	_	flavone/flavanone C-hexosyltransferase			2	LOC_Os02g37690. metabolite: Luteolin 6-C-glucoside.	 Biochemical character	Os02g0589400	LOC_Os02g37690.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18238	_		_	Amino acid permease			3	LOC_Os03g25820. metabolite: l-alanine.	 Biochemical character	Os03g0374800	LOC_Os03g25820.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18239	_		_	Amidase			4	LOC_Os04g10410. metabolite: Kynurenic acid.	 Biochemical character	Os04g0182875/Os04g0182900					GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor		
18240	_		_	O-methyltransferase, flavonoid methyltransferase			4	LOC_Os04g11970. metabolite: Methylapigenin C-hexoside.	 Biochemical character	Os04g0196200	LOC_Os04g11970.1				GO:0008171 - O-methyltransferase activity		
18241	_		_	agmatine hydroxycinnamoyl acyltransferase, agmatine N-hydroxycinnamoyl- transferase, feruloylagmatine synthase			4	LOC_Os04g56910. metabolite: N-feruloylagmatine. combination of the best substrates: feruloyl-CoA/agmatine.	 Biochemical character	Os04g0664600	LOC_Os04g56910.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0009005 - root , PO:0009046 - flower 
18242	UGT72F1		UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72F1	Hydroquinone UGT, UDP-glucose-dependent glycosyltransferase 72F1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72F1		5	LOC_Os05g12450. metabolite: Trans-zeatin N-glucoside.	 Biochemical character	Os05g0215300	LOC_Os05g12450.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle		
18243	_	UGT	_				5	LOC_Os05g40720. metabolite: DIMBOA glucoside.	 Biochemical character	Os05g0485500	LOC_Os05g40720.1						
18244	_	UGT	_				6	LOC_Os06g17260. metabolite: 4-pyridoxic acid O-hexoside.	 Biochemical character	Os06g0283100	LOC_Os06g17260.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18245	_	UGT	_	flavone C-pentosyltransferase			6	LOC_Os06g18140. metabolite: Methylnaringenin C-pentoside.	 Biochemical character	Os06g0289200	LOC_Os06g18140.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18246	_	UGT	_	C-pentosyl flavone pentosyltransferase			6	LOC_Os06g18670. metabolite:Di-C,C-pentosyl-apigenin.	 Biochemical character	Os06g0289900	LOC_Os06g18670.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18247	PDX1.3A	OsPDX1.3a	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3A	SOR/SNZ protein, pyridoxine synthase, PYRIDOXINE BIOSYNTHESIS PROTEIN1.3a	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3A		7	LOC_Os07g01020. metabolite: Pyridoxine. Q69LA6.	 Biochemical character	Os07g0100200	LOC_Os07g01020.1				GO:0008615 - pyridoxine biosynthetic process, GO:0042823 - pyridoxal phosphate biosynthetic process, GO:0003824 - catalytic activity		
18248	UGT707A2	UGT, OsUGT707A2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A2	UDP-glucosyl transferase, flavone 5-O-glucosyltransferase, UDP-dependent glycosyltransferase 707A2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A2		7	LOC_Os07g32060. metabolite: Apigenin 5-O-glucoside.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0503900	LOC_Os07g32060.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0010224 - response to UV-B	TO:0000601 - UV-B light sensitivity	
18249	_		_	Cytochrome P450			8	LOC_Os08g01450. metabolite: (-)-trans-carveol.	 Biochemical character	Os08g0105400	LOC_Os08g01450.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
18250	_	OsTPS29, TPS29, OsCAS, CAS, OsTPS3, TPS3	_	Terpene synthase 29, beta-caryophyllene synthetase			8	LOC_Os08g04500. metabolite: Integrifoside A. GO:1901937: beta-caryophyllene biosynthetic process. OsTPS3 in Liang et al. 2017.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0139700	LOC_Os08g04500.2, LOC_Os08g04500.1				GO:0051607 - defense response to virus, GO:0000287 - magnesium ion binding, GO:0051762 - sesquiterpene biosynthetic process	TO:0000148 - viral disease resistance, TO:0000386 - rice ragged stunt virus resistance	
18251	_	OsAT4c, AT4c	_	putrescine hydroxycinnamoyl acyltransferase, putrescine/agmatine hydroxycinnamoyl acyltransferase, putrescine/ agmatine N-hydroxycinnamoyltransferase, feruloylputrescine synthase			9	LOC_Os09g37200. metabolite: N-feruloylputrescine. combination of the best substrates: feruloyl-CoA/agmatine.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0544000	LOC_Os09g37200.1				GO:0080027 - response to herbivore, GO:0009611 - response to wounding, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000054 - animal damage resistance	PO:0009005 - root , PO:0009046 - flower 
18252	PDX1.3B	OsPDX1.3b	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3B	SOR/SNZ protein, pyridoxine synthase, PYRIDOXINE BIOSYNTHESIS PROTEIN1.3b	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3B		10	LOC_Os10g01080. metabolite: Pyridoxine O-glucoside. Q8W3D0.	 Biochemical character	Os10g0100700	LOC_Os10g01080.1				GO:0003824 - catalytic activity, GO:0008615 - pyridoxine biosynthetic process, GO:0042823 - pyridoxal phosphate biosynthetic process		
18253	_	OsSTA240	_	MATE efflux protein			10	LOC_Os10g11860. metabolite: Chlorogenic acid. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0195000	LOC_Os10g11860.1				GO:0015238 - drug transporter activity, GO:0016021 - integral to membrane, GO:0015297 - antiporter activity		PO:0009066 - anther 
18254	_		_	Decarboxylase			10	LOC_Os10g23900. metabolite: l-tyramine.	 Biochemical character	Os10g0380800	LOC_Os10g23900.1				GO:0016831 - carboxy-lyase activity, GO:0006520 - cellular amino acid metabolic process		
18255	_	UGT	_	UDP-glucosyltransferase			11	LOC_Os11g26950. metabolite: Chrysoeriol 7-O-rutinoside.	 Biochemical character	Os11g0457300	LOC_Os11g26950.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18256	TBT2	Os-TBT2, OsTBT2	TRYPTAMINE BENZOYL TRANSFERASE 2 	tryptamine benzoyl transferase 2	TRYPTAMINE BENZOYL TRANSFERASE 2 		11	LOC_Os11g42370. KX430022.	 Biochemical character	Os11g0643100	LOC_Os11g42370.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
18257	_		_	Transferase			11	LOC_Os11g42480. metabolite: p-coumaroyl-2-hydroxyputrescine.	 Biochemical character	Os11g0644500	LOC_Os11g42480.1						
18258	_		_	spermidine acyltransferase, spermidine hydroxycinnamoyl transferase			12	LOC_Os12g27220. metabolite: N-p-coumaroylspermidine.	 Biochemical character		LOC_Os12g27220				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0008216 - spermidine metabolic process		
18259	_	OsRAD51B, OsRad51B	_	DNA repair protein RAD51B				one of five RAD51 paralogs.	 Biochemical character								
18260	_	OsRAD51C, OsRad51C	_	DNA repair protein RAD51C				one of five RAD51 paralogs.	 Biochemical character								
18261	_	OsXRCC2	_					one of five RAD51 paralogs.	 Biochemical character								
18262	_	OsXRCC3	_					one of five RAD51 paralogs.	 Biochemical character								
18263	_	OsCAF1-2, OsCAF1Q	_	CCR4-associated factor 1-2, carbon catabolite repressor 4-associated factor 1-2, CCR4-associated factor 1Q, carbon catabolite repressor 4-associated factor 1Q			3	LOC_Os03g53260.			LOC_Os03g53260				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18264	_	OsCAF1-3, OsCAF1-4	_	CCR4-associated factor 1-3, carbon catabolite repressor 4-associated factor 1-3, CCR4-associated factor 1-4, carbon catabolite repressor 4-associated factor 1-4			4	LOC_Os04g39260 (OsCAF1-3: LOC_Os04g39260.1, OsCAF1-4: LOC_Os04g39260.3).	 Tolerance and resistance - Stress tolerance	Os04g0467400	LOC_Os04g39260.3, LOC_Os04g39260.2, LOC_Os04g39260.1				GO:0009751 - response to salicylic acid stimulus, GO:0006995 - cellular response to nitrogen starvation, GO:0046872 - metal ion binding, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0009560 - embryo sac egg cell differentiation, GO:0006952 - defense response, GO:0006397 - mRNA processing, GO:0005737 - cytoplasm, GO:0004535 - poly(A)-specific ribonuclease activity, GO:0003723 - RNA binding	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity	
18265	_	OsCAF1-6, OsCAF1D	_	CCR4-associated factor 1-6, carbon catabolite repressor 4-associated factor 1-6, CCR4-associated factor 1D, carbon catabolite repressor 4-associated factor 1D			6	LOC_Os06g04670.		Os06g0138400	LOC_Os06g04670.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18266	_	OsCAF1-7, OsCAF1L	_	CCR4-associated factor 1-7, carbon catabolite repressor 4-associated factor 1-7, CCR4-associated factor 1L, carbon catabolite repressor 4-associated factor 1L			6	LOC_Os06g30770.		Os06g0503700	LOC_Os06g30770.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18267	_	OsCAF1-8, OsCAF1K	_	CCR4-associated factor 1-8, carbon catabolite repressor 4-associated factor 1-8, CCR4-associated factor 1K, carbon catabolite repressor 4-associated factor 1K			6	LOC_Os06g30790.		Os06g0503900	LOC_Os06g30790.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18268	_	OsCAF1-9, OsCAF1J	_	CCR4-associated factor 1-9, carbon catabolite repressor 4-associated factor 1-9, CCR4-associated factor 1J, carbon catabolite repressor 4-associated factor 1J			6	LOC_Os06g34520.		Os06g0536000	LOC_Os06g34520.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18269	_	OsCAF1-10, OsCAF1C	_	CCR4-associated factor 1-10, carbon catabolite repressor 4-associated factor 1-10, CCR4-associated factor 1C, carbon catabolite repressor 4-associated factor 1C			7	LOC_Os07g07430.		Os07g0169800	LOC_Os07g07430.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18270	_	OsCAF1-11	_	CCR4-associated factor 1-11, carbon catabolite repressor 4-associated factor 1-11			7	LOC_Os08g34160.	 Tolerance and resistance - Stress tolerance	Os08g0440200	LOC_Os08g34160.1				GO:0005737 - cytoplasm, GO:0003723 - RNA binding, GO:0004535 - poly(A)-specific ribonuclease activity, GO:0046872 - metal ion binding, GO:0006397 - mRNA processing, GO:0006995 - cellular response to nitrogen starvation		
18271	_	OsCAF1-14, OsCAF1F	_	CCR4-associated factor 1-14, carbon catabolite repressor 4-associated factor 1-14, CCR4-associated factor 1F, carbon catabolite repressor 4-associated factor 1F			10	LOC_Os10g03530.		Os10g0123900	LOC_Os10g03530.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18272	_	OsCAF1-15, OsCAF1I	_	CCR4-associated factor 1-15, carbon catabolite repressor 4-associated factor 1-15, CCR4-associated factor 1I, carbon catabolite repressor 4-associated factor 1I			10	LOC_Os10g03560.		Os10g0124200	LOC_Os10g03560.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18273	_	OsCAF1-16, OsCAF1E	_	CCR4-associated factor 1-16, carbon catabolite repressor 4-associated factor 1-16, CCR4-associated factor 1E, carbon catabolite repressor 4-associated factor 1E			10	LOC_Os10g03880.		Os10g0128300	LOC_Os10g03880.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18274	_	OsCAF1-17, OsCAF1M	_	CCR4-associated factor 1-17, carbon catabolite repressor 4-associated factor 1-17, CCR4-associated factor 1M, carbon catabolite repressor 4-associated factor 1M			10	LOC_Os10g28450.		Os10g0420600	LOC_Os10g28450.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18275	_	OsCAF1-18, OsCAF1O	_	CCR4-associated factor 1-18, carbon catabolite repressor 4-associated factor 1-18, CCR4-associated factor 1O, carbon catabolite repressor 4-associated factor 1O			10	LOC_Os10g28520.		Os10g0421000	LOC_Os10g28520.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18276	_	OsCAF1-19, OsCAF1P	_	CCR4-associated factor 1-19, carbon catabolite repressor 4-associated factor 1-19, CCR4-associated factor 1P, carbon catabolite repressor 4-associated factor 1P			10	LOC_Os10g28540.		Os10g0421200	LOC_Os10g28540.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18277	_	OsCAF1-20, OsCAF1R	_	CCR4-associated factor 1-20, carbon catabolite repressor 4-associated factor 1-20, CCR4-associated factor 1R, carbon catabolite repressor 4-associated factor 1R			10	LOC_Os10g28580.		Os10g0421600	LOC_Os10g28580.1				GO:0003676 - nucleic acid binding		
18278	_	OsCAF1-21, OsCAF1N	_	CCR4-associated factor 1-21, carbon catabolite repressor 4-associated factor 1-21, CCR4-associated factor 1N, carbon catabolite repressor 4-associated factor 1N			10	LOC_Os10g28590.		Os10g0421700	LOC_Os10g28590.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18279	_	OsWOX9D	_	WUSCHEL-related homeobox 9D					 Other								
18280	_	OSK5	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 5, Oryza sativa SKP1-like gene 5			9	LOC_Os09g10260.	 Tolerance and resistance - Disease resistance	Os09g0274700	LOC_Os09g10260.1				GO:0009615 - response to virus, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000148 - viral disease resistance	
18281	_	OSK20	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 20, Oryza sativa SKP1-like gene 20			9	LOC_Os09g36830.	 Tolerance and resistance - Disease resistance	Os09g0539500	LOC_Os09g36830.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009615 - response to virus	TO:0000148 - viral disease resistance	
18282	_		_	OsCullin1			3	LOC_Os03g44900.		Os03g0652100	LOC_Os03g44900.3, LOC_Os03g44900.2, LOC_Os03g44900.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
18283	_	OSK2	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 2, Oryza sativa SKP1-like gene 2			10	LOC_Os10g30200.		Os10g0438100	LOC_Os10g30200.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18284	_	OSK3	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 3, Oryza sativa SKP1-like gene 3			2	LOC_Os02g13180.		Os02g0225100	LOC_Os02g13180.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18285	_	OSK6	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 6, Oryza sativa SKP1-like gene 6			7	LOC_Os07g05180.		Os07g0145300	LOC_Os07g05180.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18286	_	OSK10	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 10, Oryza sativa SKP1-like gene 10			6	LOC_Os06g02360.		Os06g0113800	LOC_Os06g02360.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18287	_	OSK15	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 15, Oryza sativa SKP1-like gene 15			8	LOC_Os08g28820.		Os08g0375700	LOC_Os08g28820.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18288	_	OSK19	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 19, Oryza sativa SKP1-like gene 19			7	LOC_Os07g43260.		Os07g0625600	LOC_Os07g43260.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18289	_	OSK21	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 21, Oryza sativa SKP1-like gene 21, SKP1-like protein 1B			7	LOC_Os07g22680. SKP1-like protein 1B in Zhang et al. 2015.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os07g0409500	LOC_Os07g22680.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0007126 - meiosis		
18290	_	OSK28	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 28, Oryza sativa SKP1-like gene 28			7	LOC_Os07g43240.		Os07g0625400	LOC_Os07g43240.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18291	_	OsGT47A	_	glycosyltransferase gene family 47 member A, glycosyltransferase 47A			1	LOC_Os01g70190. Q8S1X8. GO:0071555: cell wall organization.	 Biochemical character	Os01g0926600	LOC_Os01g70190.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0045492 - xylan biosynthetic process		
18292	_	OsACBP2, ACBP2	_	Acyl-CoA-binding protein 2			6	LOC_Os06g02490. similar to human liver ACBP.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0115300	LOC_Os06g02490.1				GO:0005829 - cytosol, GO:0000062 - acyl-CoA binding, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0009409 - response to cold	TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0007010 - whole plant fruit ripening stage , PO:0025034 - leaf 
18293	_	OsACBP3, ACBP3	_	Acyl-CoA-binding protein 3			3	LOC_Os03g37960.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0576600	LOC_Os03g37960.1				GO:0009611 - response to wounding, GO:0005829 - cytosol, GO:0000062 - acyl-CoA binding, GO:0009409 - response to cold, GO:0050832 - defense response to fungus	TO:0000303 - cold tolerance, TO:0000074 - blast disease	PO:0007016 - whole plant flowering stage , PO:0025034 - leaf 
18294	_	OsACBP4, ACBP4	_	Acyl-CoA-binding protein 4			4	LOC_Os04g58550. GO:0071782: endoplasmic reticulum tubular network.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0681900	LOC_Os04g58550.1				GO:0050832 - defense response to fungus, GO:0000062 - acyl-CoA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0005783 - endoplasmic reticulum, GO:0005789 - endoplasmic reticulum membrane	TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0007016 - whole plant flowering stage , PO:0025034 - leaf 
18295	_	OsACBP5, ACBP5	_	Acyl-CoA-binding protein 5			3	LOC_Os03g14000. GO:0071782: endoplasmic reticulum tubular network.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0243600	LOC_Os03g14000.2, LOC_Os03g14000.1				GO:0005783 - endoplasmic reticulum, GO:0000062 - acyl-CoA binding, GO:0005576 - extracellular region, GO:0015908 - fatty acid transport, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005789 - endoplasmic reticulum membrane, GO:0005635 - nuclear envelope	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025530 - reproductive shoot system development stage , PO:0025034 - leaf 
18296	_	OsACBP6, ACBP6	_	Acyl-CoA-binding protein 6			3	LOC_Os03g61930.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0835600	LOC_Os03g61930.4, LOC_Os03g61930.3, LOC_Os03g61930.2, LOC_Os03g61930.1				GO:0006635 - fatty acid beta-oxidation, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0000062 - acyl-CoA binding, GO:0005777 - peroxisome	TO:0000074 - blast disease	PO:0025034 - leaf 
18297	_	OsOFP1, OsOFP01, OFP1	_	OVATE family protein 1, OVATE-domain containing protein 1		ofp1, ofp1-1, ofp1-2	1	LOC_Os01g12690.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape	Os01g0226700	LOC_Os01g12690.1				GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling	TO:0000206 - leaf angle, TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity, TO:0002730 - grain shape	PO:0009039 - glume 
18298	_	OsOFP2, OsOFP03, OFP2	_	OVATE family protein 2, ovate family protein 3, OVATE-domain containing protein 3			1	LOC_Os01g43610. OsOFP03 in Yu et al. 2015. TO:0000748: leaf anatomy and morphology trait. GO:1901141: regulation of lignin biosynthetic process.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits	Os01g0625900	LOC_Os01g43610.1				GO:0009741 - response to brassinosteroid stimulus, GO:0009809 - lignin biosynthetic process, GO:0005634 - nucleus, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0042445 - hormone metabolic process, GO:0005829 - cytosol, GO:0003700 - transcription factor activity, GO:0001944 - vasculature development	TO:0002675 - gibberellic acid content, TO:0000207 - plant height, TO:0000731 - lignin content, TO:0000492 - leaf shape, TO:0000484 - seed shape, TO:0002637 - leaf size, TO:0002677 - brassinosteroid sensitivity	PO:0005052 - plant callus 
18299	_	OsOFP3, OsOFP04	_	OVATE family protein 3, ovate family protein 4, OVATE-domain containing protein 4			1	LOC_Os01g53160.  OsOFP04 in Yu et al. 2015.		Os01g0732300	LOC_Os01g53160.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18300	_	OsOFP4, OFP4, OsOFP06, OsOFP6, OFP6	_	OVATE family protein 4, ovate family protein 6, OVATE-domain containing protein 6			1	LOC_Os01g60810.  OsOFP06 in Yu et al. 2015. OsOFP6 in Ma et al. 2017.	 Vegetative organ - Culm,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os01g0823500	LOC_Os01g60810.1				GO:0005634 - nucleus, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0010311 - lateral root formation, GO:0048527 - lateral root development, GO:0009926 - auxin polar transport, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0001013 - lateral root number, TO:0002730 - grain shape, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0001012 - lateral root length	PO:0009039 - glume 
18301	_	OsOFP5, OsOFP07	_	OVATE family protein 5, ovate family protein 7, OVATE-domain containing protein 7			1	LOC_Os01g64410. OsOFP07 in Yu et al. 2015.		Os01g0863800	LOC_Os01g64410.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18302	_	OsOFP6, OsOFP09	_	OVATE family protein 6, ovate family protein 9, OVATE-domain containing protein 9			2	LOC_Os02g45620. OsOFP09 in Yu et al. 2015.		Os02g0679700	LOC_Os02g45620.1				GO:0005634 - nucleus		PO:0009005 - root 
18303	_	OsOFP7, OsOFP11	_	OVATE family protein 7, ovate family protein 11, OVATE-domain containing protein 11			3	LOC_Os03g06350. OsOFP11 in Yu et al. 2015.		Os03g0159400	LOC_Os03g06350.1				GO:0010431 - seed maturation, GO:0005634 - nucleus	TO:0002661 - seed maturation	PO:0009001 - fruit , PO:0007042 - whole plant fruit formation stage 
18304	_	OsOFP8, OsOFP12	_	OVATE family protein 8, ovate family protein 12, OVATE-domain containing protein 12			3	LOC_Os03g10150. OsOFP12 in Yu et al. 2015.		Os03g0197900	LOC_Os03g10150.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18305	_	OsOFP9, OsOFP13	_	OVATE family protein 9, ovate family protein 13, OVATE-domain containing protein 13			3	LOC_Os03g21870. OsOFP13 in Yu et al. 2015.		Os03g0336900	LOC_Os03g21870.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18306	_	OsOFP10, OsOFP14, OFP10, OFP14	_	OVATE family protein 10, ovate family protein 14, OVATE-domain containing protein 14			4	LOC_Os04g33870. OsOFP14 in Yu et al. 2015, Zhao et al. 2018.		Os04g0415100	LOC_Os04g33870.1				GO:0005634 - nucleus, GO:0045892 - negative regulation of transcription, DNA-dependent		PO:0009049 - inflorescence 
18307	_	OsOFP11, OsOFP16	_	OVATE family protein 11, ovate family protein 16, OVATE-domain containing protein 16			4	LOC_Os04g48830. OsOFP16 in Yu et al. 2015.		Os04g0577700	LOC_Os04g48830.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
18308	_	OsOFP12, OsOFP17	_	OVATE family protein 12, ovate family protein 17, OVATE-domain containing protein 17			4	LOC_Os04g58820. OsOFP17 in Yu et al. 2015.		Os04g0685000	LOC_Os04g58820.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18309	_	OsOFP13, OsOFP19, OFP13, OFP19	_	OVATE family protein 13, ovate family protein 19, OVATE-domain containing protein 19			5	LOC_Os05g25910. OsOFP19 in Yu et al. 2015, Yang et al. 2018. GO:0090511: periclinal cell division.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root	Os05g0324600	LOC_Os05g25910.1				GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus, GO:0009742 - brassinosteroid mediated signaling	TO:0000051 - stem strength, TO:0000207 - plant height, TO:0000258 - leaf thickness	PO:0020033 - coleoptile 
18310	_	OsOFP14, OsOFP21	_	OVATE family protein 14, ovate family protein 21, OVATE-domain containing protein 21			5	LOC_Os05g36990. OsOFP21 in Yu et al. 2015.		Os05g0441400	LOC_Os05g36990.1				GO:0005634 - nucleus		PO:0009005 - root 
18311	_	OsOFP15, OsOFP22	_	OVATE family protein 15, ovate family protein 22, OVATE-domain containing protein 22			5	LOC_Os05g39950. OsOFP22 in Yu et al. 2015.		Os05g0477200	LOC_Os05g39950.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0005052 - plant callus 
18312	_	OsOFP16, OsOFP24	_	OVATE family protein 16, ovate family protein 24, OVATE-domain containing protein 24			7	LOC_Os07g48150. OsOFP24 in Yu et al. 2015.		Os07g0679200	LOC_Os07g48150.1				GO:0010431 - seed maturation, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0002661 - seed maturation	PO:0009001 - fruit , PO:0007042 - whole plant fruit formation stage 
18313	_	OsOFP17, OsOFP27	_	OVATE family protein 17, ovate family protein 27, OVATE-domain containing protein 27			10	LOC_Os10g38880. OsOFP27 in Yu et al. 2015.		Os10g0532600	LOC_Os10g38880.1				GO:0005634 - nucleus		PO:0009005 - root 
18314	_	OsOFP18, OsOFP28	_	OVATE family protein 18, ovate family protein 28, OVATE-domain containing protein 28			11	LOC_Os11g05770. OsOFP28 in Yu et al. 2015.		Os11g0156300	LOC_Os11g05770.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
18315	_	OsOFP19, OsOFP30	_	OVATE family protein 19, ovate family protein 30, OVATE-domain containing protein 30			12	LOC_Os12g06150. OsOFP30 in Yu et al. 2015.		Os12g0158300	LOC_Os12g06150.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18316	_	OsOFP20, OsOFP31	_	OVATE family protein 20, ovate family protein 31, OVATE-domain containing protein 31			12	LOC_Os12g06160. OsOFP31 in Yu et al. 2015.		Os12g0158400	LOC_Os12g06160.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18317	_	OsOFP21, OsOFP10	_	OVATE family protein 21, ovate family protein 10, OVATE-domain containing protein 10			3	LOC_Os03g03480. OsOFP10 in Yu et al. 2015.		Os03g0126450	LOC_Os03g03480.1				GO:0005634 - nucleus		PO:0009005 - root 
18318	_	OsOFP22, OsOFP05	_	OVATE family protein 22, ovate family protein 5, OVATE-domain containing protein 5			1	LOC_Os01g54570. OsOFP05 in Yu et al. 2015.			LOC_Os01g54570				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18319	_	OsOFP23, OsOFP20	_	OVATE family protein 23, ovate family protein 20, OVATE-domain containing protein 20			5	LOC_Os05g36970. OsOFP20 in Yu et al. 2015.		Os05g0440900	LOC_Os05g36970.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18320	_	OsOFP24, OsOFP15	_	OVATE family protein 24, ovate family protein 15, OVATE-domain containing protein 15			4	LOC_Os04g37510.  OsOFP15 in Yu et al. 2015.		Os04g0447900	LOC_Os04g37510.1				GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus	TO:0002677 - brassinosteroid sensitivity	PO:0005052 - plant callus 
18321	_	OsOFP25, OsOFP23	_	OVATE family protein 25, ovate family protein 23, OVATE-domain containing protein 23			5	LOC_Os05g44090. OsOFP23 in Yu et al. 2015.		Os05g0517100	LOC_Os05g44090.1				GO:0005634 - nucleus		PO:0025034 - leaf 
18322	_	OsOFP26, OsOFP29	_	OVATE family protein 26, ovate family protein 29, OVATE-domain containing protein 29			11	LOC_Os11g05780. OsOFP29 in Yu et al. 2015.		Os11g0156401	LOC_Os11g05780.1				GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity	PO:0009039 - glume 
18323	_	OsOFP27, OsOFP02	_	OVATE family protein 27, ovate family protein 2, OVATE-domain containing protein 2			1	LOC_Os01g40970. OsOFP02 in Yu et al. 2015.		Os01g0592800	LOC_Os01g40970.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0005634 - nucleus		PO:0009005 - root 
18324	_	OsOFP28, OsOFP25	_	OVATE family protein 28, ovate family protein 25, OVATE-domain containing protein 25			8	LOC_Os08g01190. OsOFP25 in Yu et al. 2015.		Os08g0102400	LOC_Os08g01190.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
18325	_	OsOFP29, OsOFP18	_	OVATE family protein 29, ovate family protein 18, OVATE-domain containing protein 18			5	LOC_Os05g12808. OsOFP18 in Yu et al. 2015.			LOC_Os05g12808				GO:0005634 - nucleus		PO:0009005 - root 
18326	_	OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30	_	OVATE family protein 30, ovate family protein 8, OVATE-domain containing protein 8		Osofp8	1	LOC_Os01g64430. Q94CV1. OsOFP08 (OsOFP8) in Yu et al. 2015 and Yang et al. 2016. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:1900457: regulation of brassinosteroid mediated signaling pathway. TO:0000975: grain width.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os01g0864000	LOC_Os01g64430.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0040008 - regulation of growth, GO:0005737 - cytoplasm, GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus	TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending	PO:0005052 - plant callus 
18327	_	OsOFP31, OsOFP26, OsSTA245	_	OVATE family protein 31, ovate family protein 26, OVATE-domain containing protein 26			10	LOC_Os10g29610. OsOFP26 in Yu et al. 2015. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0431700	LOC_Os10g29610.1				GO:0005634 - nucleus		PO:0005052 - plant callus , PO:0009066 - anther 
18328	_	OsOFP32	_	OVATE family protein 32			7	LOC_Os07g48140.		Os07g0679100	LOC_Os07g48140.1						
18329	_	OsOFP33	_	OVATE family protein 33			5	LOC_Os05g26210.		Os05g0328300	LOC_Os05g26210.1						
18330	_	OsMAGO1, MAGO1	_	MAGO NASHI 1			8	exon junction complex (EJC) core subunit. KF051011. GO:0044822: poly(A) RNA binding.	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0107900	LOC_Os08g01660.3, LOC_Os08g01660.2, LOC_Os08g01660.1				GO:0035145 - exon-exon junction complex, GO:0009908 - flower development, GO:0008380 - RNA splicing	TO:0000622 - flower development trait, TO:0000215 - stamen anatomy and morphology trait	
18332	_	OsY14b, Y14b	_				3	KF051017. exon junction complex (EJC) core subunit.	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance	Os03g0809900	LOC_Os03g59550.1				GO:0005634 - nucleus, GO:0009790 - embryonic development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0006396 - RNA processing, GO:0005737 - cytoplasm	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000620 - embryo development trait	
18333	_	OsY14a, Y14a	_				5	KF051016. exon junction complex (EJC) core subunit.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0140500	LOC_Os05g04850.2, LOC_Os05g04850.1				GO:0009555 - pollen development, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000079 - lemma and palea anatomy and morphology trait	
18334	_	OsZFP6	_	CCHC-type zinc finger protein 6			2		 Tolerance and resistance - Stress tolerance	Os02g0552700	LOC_Os02g34760.1				GO:0003676 - nucleic acid binding, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
18335	_	SIT1	_	Salt Intolerance 1		sit1-1	2	a Receptor-Like Kinase. LOC_Os02g42780. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os02g0640500	LOC_Os02g42780.1				GO:0009873 - ethylene mediated signaling pathway, GO:0004674 - protein serine/threonine kinase activity, GO:0009693 - ethylene biosynthetic process, GO:0005524 - ATP binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
18336	_	SIT2	_	Salt Intolerance 2		sit2-D	4	a Receptor-Like Kinase. LOC_Os02g42780. 	 Tolerance and resistance - Stress tolerance	Os04g0531400	LOC_Os04g44900.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0006001 - salt tolerance	
18337	_	SIT3	_	Salt Intolerance 3			7	a Receptor-Like Kinase. LOC_Os07g38810.	 Tolerance and resistance - Stress tolerance	Os07g0575700	LOC_Os07g38810.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
18338	_	SPED1	_	SHORTENED PEDICELS AND/OR SECONDARY BRANCHES 1		sped1-D	6	Pentatricopeptide Repeat Protein. LOC_Os06g39650.	 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os06g0597500	LOC_Os06g39650.1					TO:0000630 - pedicel length, TO:0000142 - secondary branching of inflorescence, TO:0000421 - pollen fertility, TO:0000050 - inflorescence branching, TO:0000089 - panicle type, TO:0000371 - yield trait	
18339	_	GID1L2	_	GID1L2 family gene, gibberellin receptor GID1L2-like gene			6	LOC_Os06g11130.	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os06g0214800	LOC_Os06g11130.1				GO:0016787 - hydrolase activity, GO:0010476 - gibberellin-mediated signaling	TO:0000142 - secondary branching of inflorescence, TO:0000166 - gibberellic acid sensitivity, TO:0000050 - inflorescence branching, TO:0000089 - panicle type, TO:0000630 - pedicel length, TO:0000371 - yield trait	
18340	_	P/TMS12-1, osa-smR5864w, osa-smR5864m	_	photo- or thermo-sensitive genic male sterility locus on chromosome 12-1, small RNA osa-smR5864w			12		 Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000009 - genic male sterility-photoperiod sensitive, TO:0000067 - genic male sterility-thermo sensitive	
18341	_	OsHID1	_	HIDDEN TREASURE 1			3	rice homolog of Arabidopsis HID1. noncoding RNA. ncRNA.							GO:0010114 - response to red light, GO:0010099 - regulation of photomorphogenesis	TO:0000158 - red light sensitivity	
18342	_	OsCCD1, CCD1	_	carotenoid cleavage dioxygenase 1			12	LOC_Os12g44310.	 Biochemical character,  Coloration - Others	Os12g0640600	LOC_Os12g44310.2, LOC_Os12g44310.1				GO:0043289 - apocarotenoid biosynthetic process, GO:0005774 - vacuolar membrane, GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0016121 - carotene catabolic process, GO:0005794 - Golgi apparatus, GO:0016124 - xanthophyll catabolic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0006950 - response to stress, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0005886 - plasma membrane, GO:0046872 - metal ion binding, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0009506 - plasmodesma, GO:0006098 - pentose-phosphate shunt, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	TO:0000496 - carotenoid content	PO:0025034 - leaf 
18343	_	OsCCD8d	_	carotenoid cleavage dioxygenase 8d			8	LOC_Os08g28240.	 Biochemical character	Os08g0369800	LOC_Os08g28240.1						
18344	_	Osppc2b, ppc2b	_	phosphoenolpyruvate carboxylase 2b, PEPCase 2b			9	LOC_Os09g14670. C3-type isozyme. a plant-type Phosphoenolpyruvate Carboxylase.	 Biochemical character	Os09g0315700	LOC_Os09g14670.1				GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide		
18345	_	Osppc3, Osppc2, ppc3, ppc2	_	phosphoenolpyruvate carboxylase 3, PEPCase 3, phosphoenolpyruvate carboxylase 2, PEPCase 2			1	LOC_Os01g55350. LC006121. C3-type isozyme. a plant-type Phosphoenolpyruvate Carboxylase. Osppc3 in Masumoto et al. 2010, Muramatsu et al.  2014 and Yamamoto et al. 2014.	 Biochemical character,  Seed	Os01g0758300	LOC_Os01g55350.1				GO:0048316 - seed development, GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide	TO:0000653 - seed development trait	PO:0004506 - developing seed stage 
18346	_	Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC	_	phosphoenolpyruvate carboxylase b, PEPCase b, bacterial-type PEPC, bacterial-type Phosphoenolpyruvate carboxylase			1	LOC_Os01g02050. a mature anther-preferentially expressed gene. a bacterial-type phosphoenolpyruvate carboxylase	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0110700	LOC_Os01g02050.1				GO:0005737 - cytoplasm, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0006099 - tricarboxylic acid cycle		PO:0009066 - anther , PO:0025281 - pollen 
18347	UGT706C1	OsUGT706C1	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706C1	UDP-dependent glucosyltransferase 706C1, UDP-dependent glycosyltransferase 706C1	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706C1		1	LOC_Os01g53430.	 Biochemical character	Os01g0736100	LOC_Os01g53430.1				GO:0033330 - kaempferol O-glucoside biosynthetic process, GO:0033303 - quercetin O-glucoside biosynthetic process, GO:0016758 - transferase activity, transferring hexosyl groups		
18348	UGT707A3	OsUGT707A3	UDP-DEPENDENT GLUCOSYLTRANSFERASE 707A3	UDP-dependent glucosyltransferase 707A3, UDP-dependent glycosyltransferase 707A3	UDP-DEPENDENT GLUCOSYLTRANSFERASE 707A3		7	LOC_Os07g32020.	 Biochemical character	Os07g0503500 	LOC_Os07g32020.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0033303 - quercetin O-glucoside biosynthetic process, GO:0033330 - kaempferol O-glucoside biosynthetic process		
18349	_	UGT709A4	_	UDP-dependent glucosyltransferase 709A4			7		 Biochemical character	Os07g0490100	LOC_Os07g30760.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18350	_	OsEnS-3	_	endosperm-specific gene 3			1	LOC_Os01g13360.	 Biochemical character	Os01g0234850	LOC_Os01g13360.2, LOC_Os01g13360.1				GO:0016773 - phosphotransferase activity, alcohol group as acceptor		
18351	_	OsEnS-4	_	endosperm-specific gene 4			1	LOC_Os01g16920.		Os01g0276300	LOC_Os01g16920.1						
18352	HAP5I	OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10	HAP5I SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	endosperm-specific gene 5, NUCLEAR FACTOR-Y subunit C10, NUCLEAR FACTOR-Y subunit NF-YC10, NF-YC transcription factor 10, NF-YC subunit 10, NF-YC family 10	HAP5I SUBUNIT OF CCAAT-BOX BINDING COMPLEX 		1	LOC_Os01g24460.			LOC_Os01g24460				GO:0005634 - nucleus, GO:0005737 - cytoplasm		PO:0009089 - endosperm 
18353	_	OsEnS-6	_	endosperm-specific gene 6			1	LOC_Os01g25450.		Os01g0356800	LOC_Os01g25450.1				GO:0005525 - GTP binding		
18354	_	OsEnS-10	_	endosperm-specific gene 10			1	LOC_Os01g41720.	 Biochemical character,  Seed - Morphological traits - Endosperm	Os01g0601000	LOC_Os01g41720.1				GO:0046873 - metal ion transmembrane transporter activity, GO:0016020 - membrane		
18355	_	OsEnS-14	_	endosperm-specific gene 14			1	LOC_Os01g54040.	 Biochemical character	Os01g0743600	LOC_Os01g54040.3, LOC_Os01g54040.2, LOC_Os01g54040.1				GO:0004176 - ATP-dependent peptidase activity		
18356	_	OsEnS-15, EnS-15	_	endosperm-specific gene 15			1	LOC_Os01g55630. Glutelin.	 Seed - Physiological traits - Storage substances	Os01g0761800	LOC_Os01g55630.1				GO:0045735 - nutrient reservoir activity		
18357	_	OsEnS-17	_	endosperm-specific gene 17			1	LOC_Os01g58660.			LOC_Os01g58660						
18358	_	OsEnS-18, EnS-18, Os6	_	endosperm-specific gene 18, cytokinin glycosyltransferase			1	LOC_Os01g59100.	 Biochemical character	Os01g0805400	LOC_Os01g59100.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18359	_	OsEnS-19	_	endosperm-specific gene 19			1	LOC_Os01g59200.		Os01g0806400	LOC_Os01g59200.1						
18360	_	OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT	_	endosperm-specific gene 20, Patatin-related phospholipase A II alpha, patatin-like protein 2, patatin-like protein			1	LOC_Os01g67310.	 Biochemical character	Os01g0898500	LOC_Os01g67310.2, LOC_Os01g67310.1				GO:0006629 - lipid metabolic process		
18361	OSCA2.5	OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.5	endosperm-specific gene 22, Hyperosmolality-gated calcium-permeable channel 2.5, DUF221 Domain containing Protein 2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.5		1	LOC_Os01g72210. OSCA1 homologue. KJ920379. Oryza brachyantha ortholog: ObOSCA2.5, Oryza glaberrima ortholog: OgOSCA2.5	 Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance	Os01g0950900	LOC_Os01g72210.2, LOC_Os01g72210.1				GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009686 - gibberellin biosynthetic process, GO:0009740 - gibberellic acid mediated signaling, GO:0048316 - seed development, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
18362	_	OsEnS-25, DEFL2, OsDEFL2, OsDf-02, Df-02	_	endosperm-specific gene 25, defensin-like 2			2	LOC_Os02g07550.	 Tolerance and resistance	Os02g0171500	LOC_Os02g07550.1				GO:0006952 - defense response		
18363	CYP71X12	OsEnS-26, EnS-26, Os CYP71X12	CYTOCHROME P450 71X12	endosperm-specific gene 26, cytochrome P450 71X12	CYTOCHROME P450 71X12		2	LOC_Os02g09190. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os02g0184600	LOC_Os02g09190.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen		
18364	_	OsEnS-27	_	endosperm-specific gene 27			2	LOC_Os02g09270.	 Biochemical character	Os02g0185500	LOC_Os02g09270.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
18365	_	OsEnS-28	_	endosperm-specific gene 28			2	LOC_Os02g09320.	 Biochemical character	Os02g0186200	LOC_Os02g09320.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
18366	_	OsEnS-32, EnS-32	_	endosperm-specific gene 32			2	LOC_Os02g15070. glutelin.	 Seed - Physiological traits - Storage substances	Os02g0248800	LOC_Os02g15070.1				GO:0045735 - nutrient reservoir activity		
18367	_	OsEnS-35	_	endosperm-specific gene 35			2	LOC_Os02g19420.		Os02g0296400	LOC_Os02g19420.1						
18368	_	OsEnS-37	_	endosperm-specific gene 37			2	LOC_Os02g28580.		Os02g0487300	LOC_Os02g28580.1						
18369	_	OsEnS-38, OsPARP3, PARP3	_	endosperm-specific gene 38, poly(ADP-ribose) polymerase 3			2	LOC_Os02g32860. Q0E0Q3. OsPARP3 is likely to be involved in the Ku-independent alternative non-homologous end-joining pathway (A-NHEJ pathway). (Ishii et al. 2016)	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0530600	LOC_Os02g32860.1				GO:0005634 - nucleus, GO:0006471 - protein amino acid ADP-ribosylation, GO:0003950 - NAD+ ADP-ribosyltransferase activity, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0009314 - response to radiation, GO:0006281 - DNA repair		
18370	_	OsEnS-39	_	endosperm-specific gene 39			2	LOC_Os02g32860.		Os02g0576400	LOC_Os02g36680.1						
18371	_	OsEnS-40, EnS-40	_	endosperm-specific gene 40			2	LOC_Os02g37480. Glycine-rich cell wall structural protein (precursor).	 Reproductive organ - panicle	Os02g0586900	LOC_Os02g37480.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
18372	_	OsEnS-42	_	endosperm-specific gene 42			2	LOC_Os02g54960.		Os02g0792500	LOC_Os02g54960.1						
18373	_	OsEnS-44, EnS-44, OsEnS44, EnS44	_	endosperm-specific gene 44			3	LOC_Os03g07226.	 Biochemical character	Os03g0168500	LOC_Os03g07226.2, LOC_Os03g07226.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
18374	_	OsEnS-46	_	endosperm-specific gene 46			3	LOC_Os03g26490.		Os03g0381500	LOC_Os03g26490.1						
18375	_	OsEnS-49	_	endosperm-specific gene 49			3	LOC_Os03g42520.		Os03g0623100	LOC_Os03g42520.1						
18376	_	OsEnS-50	_	endosperm-specific gene 50			3	LOC_Os03g45210.	 Biochemical character	Os03g0654700	LOC_Os03g45210.1				GO:0047800 - cysteamine dioxygenase activity		
18377	_	OsEnS-51	_	endosperm-specific gene 51			3	LOC_Os03g46100.	 Seed - Physiological traits - Storage substances	Os03g0663800	LOC_Os03g46100.5, LOC_Os03g46100.4, LOC_Os03g46100.2, LOC_Os03g46100.1				GO:0045735 - nutrient reservoir activity		
18378	_	OsEnS-52	_	endosperm-specific gene 52			3	LOC_Os03g48220.	 Tolerance and resistance	Os03g0687700	LOC_Os03g48220.1				GO:0006952 - defense response, GO:0017148 - negative regulation of translation, GO:0030598 - rRNA N-glycosylase activity		
18379	_	OsEnS-53	_	endosperm-specific gene 53			3	LOC_Os03g51350.		Os03g0723400	LOC_Os03g51350.1						
18380	_	OsEnS-56, pro10.2	_	endosperm-specific gene 56			3	LOC_Os03g55734. 10 kDa prolamin.	 Seed - Physiological traits - Storage substances	Os03g0766200	LOC_Os03g55734.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
18381	_	OsEnS-57, EnS-57, CDP3.1	_	endosperm-specific gene 57, cupin domain containing protein 3.1, Cupincin		cdp3.1	3	LOC_Os03g57960. B8AL97, Q852L2.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os03g0793700	LOC_Os03g57960.1				GO:0009845 - seed germination, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0009505 - plant-type cell wall, GO:0045735 - nutrient reservoir activity, GO:0019915 - lipid storage	TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0001170 - seed development stage , PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage 
18382	_	OsEnS-58	_	endosperm-specific gene 58			3	LOC_Os03g61160. APC regulator. APC regulatory subunit.		Os03g0826900	LOC_Os03g61160.5, LOC_Os03g61160.4, LOC_Os03g61160.3, LOC_Os03g61160.2, LOC_Os03g61160.1						
18383	_	OsEnS-59	_	endosperm-specific gene 59			3	LOC_Os03g62590. putative steroleosin-B.	 Biochemical character,  Seed - Physiological traits - Dormancy	Os03g0842900	LOC_Os03g62590.1				GO:0009845 - seed germination, GO:0016021 - integral to membrane, GO:0006694 - steroid biosynthetic process, GO:0016114 - terpenoid biosynthetic process, GO:0016491 - oxidoreductase activity		PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
18384	_	OsEnS-60	_	endosperm-specific gene 60			4	LOC_Os04g12639.		Os04g0203400	LOC_Os04g12639.1						
18385	_	OsEnS-62	_	endosperm-specific gene 62			4	LOC_Os04g32070.	 Biochemical character	Os04g0390700	LOC_Os04g32070.1				GO:0016491 - oxidoreductase activity		
18386	_	OsEnS-63	_	endosperm-specific gene 63			4	LOC_Os04g32430.		Os04g0395300	LOC_Os04g32430.1						
18387	_	OsEnS-64, PCC13-62	_	endosperm-specific gene 64, desiccation-related protein, desiccation-related protein PCC13-62			4	LOC_Os04g33150.	 Tolerance and resistance - Stress tolerance	Os04g0404400	LOC_Os04g33150.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
18388	_	OsEnS-66	_	endosperm-specific gene 66			4	LOC_Os04g35490.		Os04g0434400	LOC_Os04g35490.1						
18389	_	OsEnS-67	_	endosperm-specific gene 67			4	LOC_Os04g43160.		Os04g0510600	LOC_Os04g43160.1						
18390	_	OsEnS-68	_	endosperm-specific gene 68			4	LOC_Os04g43170.		Os04g0510900	LOC_Os04g43170.1						
18391	_	OsEnS-71	_	endosperm-specific gene 71			4	LOC_Os04g44580.		Os04g0528000	LOC_Os04g44580.1						
18392	_	OsEnS-74	_	endosperm-specific gene 74			5	LOC_Os05g12670.		Os05g0218100	LOC_Os05g12670.1						
18393	SCP27	OsEnS-75, OsSCP27, OsSCP28, SCP28	SERINE CARBOXYPEPTIDASE 27	endosperm-specific gene 75, Serine carboxypeptidase 27, Serine carboxypeptidase 28	SERINE CARBOXYPEPTIDASE 27		5	LOC_Os05g18604. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml One of the two candidate genes within the grain weight major QTL region OsqGW5.1 (Daware et al. 2016).	 Biochemical character	Os05g0268500	LOC_Os05g18604.6, LOC_Os05g18604.5, LOC_Os05g18604.4, LOC_Os05g18604.3, LOC_Os05g18604.2, LOC_Os05g18604.1				GO:0004185 - serine-type carboxypeptidase activity		PO:0009010 - seed 
18394	_	OsEnS-76, pro13b.19	_	endosperm-specific gene 76			5	LOC_Os05g26690. 13 kDa prolamin.	 Seed - Physiological traits - Storage substances	Os05g0331366	LOC_Os05g26690.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
18395	_	OsEnS-78	_	endosperm-specific gene 78			5	LOC_Os05g47820.		Os05g0551500	LOC_Os05g47820.2, LOC_Os05g47820.1						
18396	_	OsEnS-79	_	endosperm-specific gene 79			5	LOC_Os05g48416.	 Biochemical character	Os05g0557900	LOC_Os05g48416.2, LOC_Os05g48416.1				GO:0008374 - O-acyltransferase activity, GO:0006629 - lipid metabolic process		
18397	_	OsEnS-80	_	endosperm-specific gene 80			5	LOC_Os05g48610.		Os05g0559800	LOC_Os05g48610.1						
18398	RLCK192	OsEnS-81, OsRLCK192	RECEPTOR-LIKE CYTOPLASMIC KINASE 192	endosperm-specific gene 81, Receptor-like Cytoplasmic Kinase 192	RECEPTOR-LIKE CYTOPLASMIC KINASE 192		5	LOC_Os05g51400.	 Seed	Os05g0591800	LOC_Os05g51400.1				GO:0048316 - seed development	TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
18399	_	OsEnS-86, EnS-86, MEG3	_	endosperm-specific gene 86, Maternally Expressed Gene 3		meg3	6	LOC_Os06g30280.	 Seed - Morphological traits,  Character as QTL - Yield and productivity	Os06g0498150	LOC_Os06g30280.1					TO:0000304 - seed thickness, TO:0000382 - 1000-seed weight	
18400	_	OsEnS-89, OsPYL13, PYL13	_	endosperm-specific gene 89, pyrabactin resistance-like 13, PYR1-like 13, pyrabactin resistance 1-like 13		pyl13	6	LOC_Os06g33490. OsPYL11, 12 or 13 in Tian et al. 2015. No name in Kim et al. 2012. thought to be nonfunctional (Tian et al. 2015). GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os06g0526466	LOC_Os06g33490.1				GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009738 - abscisic acid mediated signaling, GO:0010427 - abscisic acid binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm		
18401	_	OsEnS-91	_	endosperm-specific gene 91			7	LOC_Os07g02920.		Os07g0120500	LOC_Os07g02920.1						
18402	_	OsEnS-95	_	endosperm-specific gene 95			7	LOC_Os07g11310.		Os07g0213600	LOC_Os07g11310.1						
18403	_	OsEnS-96	_	endosperm-specific gene 96			7	LOC_Os07g11330.	 Biochemical character	Os07g0213800	LOC_Os07g11330.1				GO:0016068 - type I hypersensitivity, GO:0005615 - extracellular space, GO:0004867 - serine-type endopeptidase inhibitor activity		
18404	_	OsEnS-101	_	endosperm-specific gene 101			7	LOC_Os07g12080.	 Biochemical character	Os07g0222000	LOC_Os07g12080.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
18405	_	OsEnS-102	_	endosperm-specific gene 102			7	LOC_Os07g13634.	 Biochemical character	Os07g0240600	LOC_Os07g13634.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18406	_	OsEnS-104	_	endosperm-specific gene 104			7	LOC_Os07g20340.	 Biochemical character	Os07g0298900	LOC_Os07g20340.1				GO:0046872 - metal ion binding, GO:0030001 - metal ion transport		
18407	_	OsEnS-105	_	endosperm-specific gene 105			7	LOC_Os07g23960.	 Biochemical character	Os07g0421600	LOC_Os07g23960.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
18408	_	OsEnS-106	_	endosperm-specific gene 106			7	LOC_Os07g29760.	 Biochemical character	Os07g0480900	LOC_Os07g29760.1				GO:0008234 - cysteine-type peptidase activity		
18409	_	OsEnS-108, EnS-108, DEFL	_	endosperm-specific gene 108, DEFL family gene			7	LOC_Os07g41290.		Os07g0604100	LOC_Os07g41290.1						
18410	_	OsEnS-110	_	endosperm-specific gene 110			7	LOC_Os07g42390.		Os07g0615500	LOC_Os07g42390.2, LOC_Os07g42390.1						
18411	_	OsEnS-112	_	endosperm-specific gene 112			7	LOC_Os07g44020.		Os07g0634000	LOC_Os07g44020.1						
18412	_	OsEnS-114	_	endosperm-specific gene 114			7	LOC_Os07g47840.		Os07g0675200	LOC_Os07g47840.1				GO:0016114 - terpenoid biosynthetic process, GO:0009644 - response to high light intensity, GO:0006457 - protein folding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0042542 - response to hydrogen peroxide		
18413	_	OsEnS-115	_	endosperm-specific gene 115			8	LOC_Os08g03410.	 Seed - Physiological traits - Storage substances	Os08g0127900	LOC_Os08g03410.1				GO:0045735 - nutrient reservoir activity		
18414	_	OsEnS-119	_	endosperm-specific gene 119			8	LOC_Os08g18974.		Os08g0286500	LOC_Os08g18974.3, LOC_Os08g18974.2, LOC_Os08g18974.1						
18415	_	OsEnS-120	_	endosperm-specific gene 120			8	LOC_Os08g23170.		Os08g0320900	LOC_Os08g23170.1						
18416	_	OsEnS-122	_	endosperm-specific gene 122			8	LOC_Os08g36440.		Os08g0467500	LOC_Os08g36440.2, LOC_Os08g36440.1						
18417	_	OsEnS-125	_	endosperm-specific gene 125			9	LOC_Os09g08280.		Os09g0256700	LOC_Os09g08280.1						
18418	_	OsEnS-126	_	endosperm-specific gene 126			9	LOC_Os09g20340.		Os09g0368900	LOC_Os09g20340.1						
18419	_	OsEnS-127	_	endosperm-specific gene 127			9	LOC_Os09g20400.		Os09g0369500	LOC_Os09g20400.1						
18420	ALAAT5	OsEnS-128, OsAlaAT5, AlaAT5	ALANINE AMINOTRANSFERASE 5	endosperm-specific gene 128, Alanine transaminase 5, alanine-aminotransferase5	ALANINE AMINOTRANSFERASE 5		9	LOC_Os09g26380.	 Biochemical character	Os09g0433900	LOC_Os09g26380.1				GO:0009058 - biosynthetic process, GO:0030170 - pyridoxal phosphate binding		
18421	_	OsEnS-130, OsPFK09, PFK09, PFK9	_	endosperm-specific gene 130, phosphofructokinase 9			9	LOC_Os09g30240. group B phosphofructokinase (PKF_B). 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0479800	LOC_Os09g30240.1				GO:0006096 - glycolysis, GO:0034059 - response to anoxia, GO:0006002 - fructose 6-phosphate metabolic process, GO:0003872 - 6-phosphofructokinase activity, GO:0005829 - cytosol, GO:0005524 - ATP binding	TO:0000482 - chemical stress sensitivity	
18422	_	OsEnS-131	_	endosperm-specific gene 131			9	LOC_Os09g39920.		Os09g0572500	LOC_Os09g39920.1						
18423	HAP5L	OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11	HAP5L SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	endosperm-specific gene 133, Nuclear Factor Y subunit C12, NUCLEAR FACTOR-Y subunit C11, NUCLEAR FACTOR-Y subunit NF-YC11, NF-YC transcription factor 11, NF-YC subunit 11, NF-YC family 11	HAP5L SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	osnf-yc11	10	LOC_Os10g11580. OsNF-YC11 in Yang et al. 2017, Li et al. 2018.	 Other	Os10g0191900	LOC_Os10g11580.1				GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0016602 - CCAAT-binding factor complex, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		PO:0005360 - aleurone layer , PO:0009089 - endosperm 
18424	_	OsEnS-134	_	endosperm-specific gene 134			10	LOC_Os10g12400.		Os10g0198900	LOC_Os10g12400.1, LOC_Os10g12390.1						
18426	_	OsEnS-138	_	endosperm-specific gene 138			10	LOC_Os10g29549.			LOC_Os10g29549						
18427	_	OsEnS-140	_	endosperm-specific gene 140			10	LOC_Os10g41160.		Os10g0561000	LOC_Os10g41160.1						
18428	_	OsEnS-142	_	endosperm-specific gene 142			11	LOC_Os11g18140.		Os11g0284600	LOC_Os11g18140.1						
18429	_	OsEnS-146, EnS-146, OsEnS146, EnS146	_	endosperm-specific gene 146			11	LOC_Os11g37270.	 Tolerance and resistance - Disease resistance	Os11g0582400	LOC_Os11g37270.1				GO:0050832 - defense response to fungus		
18430	_	OsEnS-147	_	endosperm-specific gene 147			11	LOC_Os11g38850.		Os11g0601500	LOC_Os11g38850.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18431	_	OsEnS-148	_	endosperm-specific gene 148			12	LOC_Os12g08700.		Os12g0187800	LOC_Os12g08700.1						
18432	_	OsEnS-149	_	endosperm-specific gene 149			12	LOC_Os12g24084.		Os12g0428700	LOC_Os12g24084.1						
18433	_	OsEnS-150, OsDR, DR	_	endosperm-specific gene 150, Dehydrogenase/reductase			12	LOC_Os12g27830.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0464400	LOC_Os12g27830.1				GO:0016491 - oxidoreductase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
18434	_	OsEnS-151	_	endosperm-specific gene 151			12	LOC_Os12g42670.		Os12g0621600	LOC_Os12g42670.1						
18436	YLC1	OsV5A, V5A	YOUNG LEAF CHLOROSIS 1	Young Leaf Chlorosis 1, VIRESCENT 5A		ylc1, ylc1-1, ylc1-2, ylc1-3, ylc1-4, osv5a	9	LOC_Os09g21250. TO:0006060: leaf chlorosis. GO:0044183: protein binding involved in protein folding.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os09g0380200	LOC_Os09g21250.1				GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane, GO:0048366 - leaf development, GO:0042651 - thylakoid membrane, GO:0009941 - chloroplast envelope, GO:0015995 - chlorophyll biosynthetic process, GO:0009409 - response to cold	TO:0000316 - photosynthetic ability, TO:0000303 - cold tolerance, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0002701 - lutein content, TO:0000496 - carotenoid content, TO:0000298 - chlorophyll ratio, TO:0000655 - leaf development trait, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait	
18437	_		_	Young Leaf Chlorosis 1-like gene, YCL1-like gene			3	LOC_Os03g15033.		Os03g0255200	LOC_Os03g15033.1				GO:0009073 - aromatic amino acid family biosynthetic process, GO:0006364 - rRNA processing, GO:0006399 - tRNA metabolic process, GO:0009658 - chloroplast organization, GO:0009706 - chloroplast inner membrane, GO:0009793 - embryonic development ending in seed dormancy, GO:0016226 - iron-sulfur cluster assembly		
18438	V5B	OsV5B	VIRESCENT 5B	Young Leaf Chlorosis 1-like gene, YCL1-like gene			8	LOC_Os08g32130. GO:0044183: protein binding involved in protein folding.		Os08g0416900	LOC_Os08g32130.2, LOC_Os08g32130.1				GO:0031969 - chloroplast membrane, GO:0042651 - thylakoid membrane, GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane		
18439	_	OSK4	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 4, Oryza sativa SKP1-like gene 4			9	LOC_Os09g10200.		Os09g0273800	LOC_Os09g10200.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18440	_	OSK7	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 7, Oryza sativa SKP1-like gene 7			9	LOC_Os09g10300.		Os09g0275200	LOC_Os09g10300.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18441	_	OSK8	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 8, Oryza sativa SKP1-like gene 8			9										
18442	_	OSK9	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 9, Oryza sativa SKP1-like gene 9			7	LOC_Os07g05150.		Os07g0144800	LOC_Os07g05150.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18443	_	OSK11	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 11, Oryza sativa SKP1-like gene 11			6	LOC_Os06g02350.			LOC_Os06g02350				GO:0006511 - ubiquitin-dependent protein catabolic process		
18444	_	OSK12	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 12, Oryza sativa SKP1-like gene 12			9	LOC_Os09g10270.		Os09g0274800	LOC_Os09g10270.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18445	_	OSK13	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 13, Oryza sativa SKP1-like gene 13			9	LOC_Os09g10230.		Os09g0274400	LOC_Os09g10230.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18446	_	OSK14	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 14, Oryza sativa SKP1-like gene 14			9	LOC_Os09g10040 (not found in MSU Rice Genome Annotation Project Release 7 data).									
18447	_	OSK16	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 16, Oryza sativa SKP1-like gene 16			7	LOC_Os07g05160.		Os07g0144900	LOC_Os07g05160.1						
18448	_	OSK17	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 17, Oryza sativa SKP1-like gene 17			7	LOC_Os07g43180.		Os07g0624900	LOC_Os07g43180.1				GO:0016301 - kinase activity, GO:0006511 - ubiquitin-dependent protein catabolic process		
18449	_	OSK18	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 18, Oryza sativa SKP1-like gene 18			7	LOC_Os07g43200.		Os07g0625100	LOC_Os07g43200.1						
18450	_	OSK22	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 22, Oryza sativa SKP1-like gene 22			7	LOC_Os07g43250.		Os07g0625500	LOC_Os07g43250.1				GO:0016301 - kinase activity, GO:0006511 - ubiquitin-dependent protein catabolic process		
18451	_	OSK23	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 23, Oryza sativa SKP1-like gene 23			7	LOC_Os07g43270.			LOC_Os07g43270				GO:0006511 - ubiquitin-dependent protein catabolic process		
18452	_	OSK25	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 25, Oryza sativa SKP1-like gene 25			8	LOC_Os08g28800.		Os08g0375500	LOC_Os08g28800.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18453	_	OSK26	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 26, Oryza sativa SKP1-like gene 26			7	LOC_Os07g43220.		Os07g0625200	LOC_Os07g43220.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18454	_	OSK27	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 27, Oryza sativa SKP1-like gene 27			7	LOC_Os07g43230.		Os07g0625300	LOC_Os07g43230.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18455	_	OSK29	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 29, Oryza sativa SKP1-like gene 29			8	LOC_Os08g28780.			LOC_Os08g28780				GO:0006511 - ubiquitin-dependent protein catabolic process		
18456	_	OSK30	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 30, Oryza sativa SKP1-like gene 30			9	LOC_Os09g10020.			LOC_Os09g10020				GO:0006511 - ubiquitin-dependent protein catabolic process		
18457	_	DSM2, OsDSM2, OsBCH1, OsHYD3	_	beta-Carotene Hydroxylase 1, carotene beta-ring hydroxylase 3		dsm2, dsm2-1, dsm2-2	3	LOC_Os03g03370. TO:0020078: zeaxanthin content. GO:901827: zeaxanthin biosynthetic process. GO:0090332: stomatal closure.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0125100	LOC_Os03g03370.2, LOC_Os03g03370.1				GO:0009411 - response to UV, GO:0006979 - response to oxidative stress, GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding, GO:0010196 - nonphotochemical quenching, GO:0016021 - integral to membrane, GO:0016123 - xanthophyll biosynthetic process, GO:0009688 - abscisic acid biosynthetic process, GO:0009414 - response to water deprivation	TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance, TO:0000301 - xanthophyll content, TO:0000316 - photosynthetic ability, TO:0002657 - oxidative stress, TO:0002667 - abscisic acid content	
18458	_	OsBCH3, OsHYD2	_	beta-Carotene Hydroxylase 3, carotene beta-ring hydroxylase 2			10	LOC_Os10g38940.	 Biochemical character	Os10g0533500	LOC_Os10g38940.1				GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0009416 - response to light stimulus, GO:0006633 - fatty acid biosynthetic process	TO:0000075 - light sensitivity	
18459	_	OsPOT	_	Proton-dependent oligopeptide transporter family protein			1	LOC_Os01g65110.	 Biochemical character	Os01g0871600	LOC_Os01g65110.1				GO:0016020 - membrane, GO:0005215 - transporter activity		
18460	_	OsPTR3, PTR3-A	_	Peptide transporter PTR3-A			12	LOC_Os12g12934.	 Biochemical character	Os12g0231000	LOC_Os12g12934.1				GO:0016020 - membrane, GO:0005215 - transporter activity		
18461	_	OsPDF1.2, DEFL6, OsDEFL6, OsDf-06, Df-06	_	PLANT DEFENSIN 1.2, defensin-like 6			2		 Tolerance and resistance	Os02g0212100	LOC_Os02g12060.1				GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response	TO:0000172 - jasmonic acid sensitivity	
18462	_	OsVSP2	_	VEGETATIVE STORAGE PROTEIN 2			5		 Biochemical character	Os05g0190500	LOC_Os05g10210.1				GO:0009753 - response to jasmonic acid stimulus, GO:0003993 - acid phosphatase activity	TO:0000172 - jasmonic acid sensitivity	
18463	_	OsS3H, S3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1	_	SALICYLIC ACID 3 HYDROXYLASE, 2-oxoglutarate-dependent dioxygenase 1			4		 Biochemical character	Os04g0581100	LOC_Os04g49210.1				GO:0010150 - leaf senescence, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
18465	_		_	Heavy-metal-associated domain-containing protein			12	LOC_Os12g05040. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os12g0144600	LOC_Os12g05040.6, LOC_Os12g05040.5, LOC_Os12g05040.3, LOC_Os12g05040.1				GO:0030001 - metal ion transport, GO:0046872 - metal ion binding		
18466	_		_	Calmodulin binding protein			1	 LOC_Os01g04280. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os01g0134700	LOC_Os01g04280.1						
18467	_		_	Proline-rich family protein			1	LOC_Os01g07520. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os01g0169900	LOC_Os01g07520.1						
18468	_	CAMK	_				6	LOC_Os06g50030. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os06g0714200	LOC_Os06g50030.1				GO:0005524 - ATP binding		
18469	_		_	Receptor-like protein kinase 2			10	LOC_Os10g03420. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.			LOC_Os10g03420				GO:0016301 - kinase activity		
18470	_		_	GTPase-activating protein			3	LOC_Os03g63710. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os03g0854100	LOC_Os03g63710.2, LOC_Os03g63710.1				GO:0032312 - regulation of ARF GTPase activity, GO:0008060 - ARF GTPase activator activity		
18471	_		_	MYB family transcription factor			1	LOC_Os01g08160. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os01g0176700	LOC_Os01g08160.1				GO:0003700 - transcription factor activity, GO:0003682 - chromatin binding		
18472	_		_	Dirigent			7	LOC_Os07g01680. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.			LOC_Os07g01680						
18473	_	OsENOD93, ENOD93	_	early nodulin 93 gene			6	one of six ENOD93 genes located in the same chromosomal region.		Os06g0142400	LOC_Os06g05020.2, LOC_Os06g05020.1				GO:0005739 - mitochondrion		
18474	_	OsENOD93	_	early nodulin 93 gene			6	LOC_Os06g04950. one of six ENOD93 genes located in the same chromosomal region.		Os06g0141700	LOC_Os06g04950.1				GO:0005739 - mitochondrion		
18475	_	OsENOD93	_	early nodulin 93 gene			6	LOC_Os06g05000. one of six ENOD93 genes located in the same chromosomal region.		Os06g0142300	LOC_Os06g05000.1				GO:0005739 - mitochondrion		
18476	_	OsENOD93	_	early nodulin 93 gene			6	LOC_Os06g04940. one of six ENOD93 genes located in the same chromosomal region.		Os06g0141600	LOC_Os06g04940.2, LOC_Os06g04940.1				GO:0009507 - chloroplast		
18478	_	OsGT43B	_	glycosyltransferase family GT43 member B			3	LOC_Os03g17850. Q10N05. GO:0071555: cell wall organization.	 Biochemical character	Os03g0287800	LOC_Os03g17850.1				GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0005794 - Golgi apparatus		
18479	_	OsGT43D	_	glycosyltransferase family GT43 member D			1	LOC_Os01g06450. Q5ZCC5. GO:0071555: cell wall organization.	 Biochemical character	Os01g0157700	LOC_Os01g06450.1				GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
18480	_	OsglHAT1, glHAT1, GW6a	_	GCN5-related N-acetyltransferase-like histone acetyltransferase 1, GNAT-like HAT1, Grain weight on chromosome 6-a		OsglHAT1N, OsglHAT1K	6	LOC_Os06g44100. LC003015-LC003018. GW6 (grain-weight quantitative trait locus on chromosome 6) consists of two loci: GW6a and GW6b that impacts grain weight equally.	 Character as QTL - Yield and productivity	Os06g0650300	LOC_Os06g44100.1				GO:0008080 - N-acetyltransferase activity, GO:0004402 - histone acetyltransferase activity, GO:0005634 - nucleus	TO:0002661 - seed maturation, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000402 - grain width, TO:0000590 - grain weight	
18481	_	RAB18	_	stress-related RAB18 gene				JF495696. a homolog of the Os03g0146000 gene.	 Tolerance and resistance - Stress tolerance						GO:0005525 - GTP binding, GO:0009651 - response to salt stress, GO:0007264 - small GTPase mediated signal transduction	TO:0006001 - salt tolerance	
18482	_	OsPR1b, PR1b	_	pathogenesis-related gene 1b			7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0125000					GO:0005576 - extracellular region, GO:0010332 - response to gamma radiation		
18483	_		_				4	LOC_Os04g55159. a protease inhibitor/seed storage/LTP family protein precursor.	 Tolerance and resistance - Stress tolerance	Os04g0644400	LOC_Os04g55159.1				GO:0010332 - response to gamma radiation		
18484	_	STV11, OsSOT1	_	sulfotransferase 1, RSV (Rice stripe virus) resistance quantitative trait locus on chromosome 11		STV11-R, STV11-S	11	LOC_Os11g30910.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0505300	LOC_Os11g30910.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0009696 - salicylic acid metabolic process, GO:0008146 - sulfotransferase activity	TO:0000148 - viral disease resistance	
18485	_	OsAAP10D, AAP10D, OsAAP6, AAP6, qPC1	_	amino acid permease 10D, amino acid permease 6, amino acid/auxin permease 6, quantitative trait locus (QTL) for GPC (grain protein content) on chromosome 1			1	LOC_Os01g65670. OsAAP6 in Zhao et al. 2012.	 Seed - Physiological traits - Storage substances	Os01g0878700	LOC_Os01g65670.1				GO:0016021 - integral to membrane	TO:0000162 - seed quality, TO:0000598 - protein content	
18486	_	OsAAP6, AAP6, OsAAP1, AAP1	_	amino acid permease 6, amino acid permease 1, amino acid/auxin permease 1			7	LOC_Os07g04180. OsAAP1 in Zhao et al. 2012 and Taylor et al. 2015.	 Biochemical character	Os07g0134000	LOC_Os07g04180.2, LOC_Os07g04180.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
18487	_	OsAAP12C, AAP12C, OsAAP2, AAP2	_	amino acid permease 12C, amino acid permease 2, amino acid/auxin permease 2			6	LOC_Os06g12330. OsAAP2 in Zhao et al. 2012.	 Biochemical character	Os06g0228600	LOC_Os06g12330.1				GO:0016021 - integral to membrane		
18488	_	OsAAP12A, AAP12A, OsAAP3, AAP3	_	amino acid permease 12A, amino acid permease 3, amino acid/auxin permease 3			6	LOC_Os06g36180. OsAAP3 in Zhao et al. 2012, Taylor et al. 2015, Lu et al. 2018.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root,  Character as QTL - Yield and productivity	Os06g0556000	LOC_Os06g36180.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0000152 - panicle number, TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000084 - root number, TO:0002673 - amino acid content, TO:0000329 - tillering ability, TO:0000227 - root length, TO:0000207 - plant height	
18489	_	OsAAP10B, AAP10B, OsAAP4, AAP4	_	amino acid permease 10B, amino acid permease 4, amino acid/auxin permease 4			12	LOC_Os12g09300. OsAAP4 in Zhao et al. 2012.	 Biochemical character	Os12g0194900	LOC_Os12g09300.3, LOC_Os12g09300.2, LOC_Os12g09300.1				GO:0016021 - integral to membrane		
18490	_	OsAAP10C, AAP10C, OsAAP5, AAP5	_	amino acid permease 10C, amino acid permease 5, amino acid/auxin permease 5			1	LOC_Os01g65660. OsAAP5 in Zhao et al. 2012.	 Biochemical character	Os01g0878400	LOC_Os01g65660.2, LOC_Os01g65660.1				GO:0016021 - integral to membrane		
18491	_	OsAAP11F, AAP11F, OsAAP7, AAP7, FCO7	_	amino acid permease 11F, amino acid permease 7, amino acid/auxin permeate 7, Functioning in Cesium Over-transport 7			5	LOC_Os05g34980. OsAAP7 in Zhao et al. 2012 and Taylor et al. 2015.	 Biochemical character	Os05g0424000	LOC_Os05g34980.1				GO:0030001 - metal ion transport, GO:0016021 - integral to membrane		
18492	_	OsAAP11E, AAP11E, OsAAP8, AAP8	_	amino acid permease 11E, amino acid permease 8, amino acid/auxin permease 8			1	LOC_Os01g66010. OsAAP8 in Zhao et al. 2012.	 Biochemical character	Os01g0882800	LOC_Os01g66010.1				GO:0016021 - integral to membrane		
18493	_	OsAAP3, OsAAP3, OsAAP9, AAP9	_	amino acid permease 3, amino acid permease 9, amino acid/auxin permease 9			2	OsAAP9 in Zhao et al. 2012.	 Biochemical character	Os02g0102200	LOC_Os02g01210.1				GO:0016021 - integral to membrane		
18494	_	OsAAP7C, AAP7C, OsAAP10, AAP10	_	amino acid permease 7C, amino acid permease 10, amino acid/auxin permease 10			2	OsAAP10 in Zhao et al. 2012.	 Biochemical character	Os02g0722400	LOC_Os02g49060.1				GO:0016021 - integral to membrane		
18495	_	OsAAP11C, AAP11C, OsAAP11, AAP11	_	amino acid permease 11C, amino acid permease 11, amino acid/auxin permease 11			11	LOC_Os11g09020. OsAAP11 in Zhao et al. 2012.	 Biochemical character	Os11g0195600	LOC_Os11g09020.1				GO:0016021 - integral to membrane		
18496	_	OsAAP11D, AAP11D, OsAAP12, AAP12	_	amino acid permease 11D, amino acid permease 12, amino acid/auxin permease 12			12	LOC_Os12g09320. OsAAP12 in Zhao et al. 2012.	 Biochemical character	Os12g0195100	LOC_Os12g09320.1				GO:0016021 - integral to membrane		
18497	_	OsAAP7A, AAP7A, OsAAP13, AAP13	_	amino acid permease 7A, amino acid permease 13, amino acid/auxin permease 13			4	LOC_Os04g39489. OsAAP13 in Zhao et al. 2012.	 Biochemical character	Os04g0470700	LOC_Os04g39489.2, LOC_Os04g39489.1				GO:0016021 - integral to membrane		
18498	_	OsAAP7B, AAP7B, OsAAP14, AAP14	_	amino acid permease 7B, amino acid permease 14, amino acid/auxin permease 14			4	LOC_Os04g56470. OsAAP14 in Zhao et al. 2012.	 Biochemical character	Os04g0659800	LOC_Os04g56470.2, LOC_Os04g56470.1, LOC_Os04g56460.1				GO:0016021 - integral to membrane		
18499	_	OsAAP11B, AAP11B, OsAAP15, AAP15	_	amino acid permease 11B, amino acid permease 15, amino acid/auxin permease 15			12	LOC_Os12g08130. OsAAP15 in Zhao et al. 2012.	 Biochemical character	Os12g0181600	LOC_Os12g08130.1				GO:0016021 - integral to membrane		
18500	_	OsAAP11A, AAP11A, OsAAP16, AAP16	_	amino acid permease 11A, amino acid permease 16, amino acid/auxin permease 16			12	LOC_Os12g08090. OsAAP16 in Zhao et al. 2012 and Taylor et al. 2015.	 Biochemical character	Os12g0181500	LOC_Os12g08090.1				GO:0016021 - integral to membrane		
18501	_	OsAAP10A, AAP10A, OsAAP17, AAP17	_	amino acid permease 10A, amino acid permease 17, amino acid/auxin permease 17			6	LOC_Os06g12350. OsAAP17 in Zhao et al. 2012.	 Biochemical character	Os06g0228800	LOC_Os06g12350.1				GO:0016021 - integral to membrane		
18502	_	OsAAP12B, AAP12B, OsAAP18, AAP18	_	amino acid permease 12B, amino acid permease 18, amino acid/auxin permease 18			6	LOC_Os06g36210. OsAAP18 in Zhao et al. 2012.	 Biochemical character	Os06g0556200	LOC_Os06g36210.1				GO:0016021 - integral to membrane		
18503	_	OsAAP11G, AAP11G, OsAAP19, AAP19	_	amino acid permease 11G, amino acid permease 19, amino acid/auxin permease 19			4	LOC_Os04g41350. OsAAP19 in Zhao et al. 2012.	 Biochemical character	Os04g0490833/Os04g0490900					GO:0016021 - integral to membrane		
18504	_	OsLHT2, LHT2	_	lysine and histidine transporter 2, lysine-histidine-like transporter 2			12	LOC_Os12g14100.	 Biochemical character	Os12g0244400	LOC_Os12g14100.1				GO:0016021 - integral to membrane		
18505	_	OsLHT8, LHT8, OsLHT3, LHT3	_	lysine-histidine-like transporter 8, lysine and histidine transporter 3			5	LOC_Os05g14820. OsLHT3 in Zhao et al. 2012.	 Biochemical character	Os05g0237800	LOC_Os05g14820.1				GO:0005886 - plasma membrane, GO:0006865 - amino acid transport, GO:0016021 - integral to membrane		
18506	_	OsLHT9, LHT9, OsLHT4, LHT4	_	lysine-histidine-like transporter 9, lysine and histidine transporter 4			4	LOC_Os04g38860. OsLHT4 in Zhao et al. 2012.	 Biochemical character	Os04g0462400	LOC_Os04g38860.2, LOC_Os04g38860.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006865 - amino acid transport		
18507	_	OsLHT7, LHT7, OsLHT5, LHT5	_	lysine-histidine-like transporter 7, lysine and histidine transporter 5			4	LOC_Os04g47420. OsLHT5 in Zhao et al. 2012.	 Biochemical character	Os04g0562100	LOC_Os04g47420.1				GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0031348 - negative regulation of defense response, GO:0005886 - plasma membrane, GO:0006865 - amino acid transport, GO:0016021 - integral to membrane		
18508	_	OsLHT4A, LHT4A, OsLHT6, LHT6	_	lysine-histidine-like transporter 4A, lysine and histidine transporter 6			12	LOC_Os12g30040. OsLHT6 in Zhao et al. 2012.	 Biochemical character	Os12g0485600	LOC_Os12g30040.1				GO:0006865 - amino acid transport, GO:0016021 - integral to membrane, GO:0010075 - regulation of meristem growth, GO:0005886 - plasma membrane		
18509	_	OsGAT1	_	gamma-aminobutyric acid transporter 1			5	LOC_Os05g50920.	 Biochemical character	Os05g0586500	LOC_Os05g50920.1				GO:0016021 - integral to membrane		
18510	_	OsGAT2	_	gamma-aminobutyric acid transporter 2			1	LOC_Os01g43320.	 Biochemical character	Os01g0621200	LOC_Os01g43320.1				GO:0016021 - integral to membrane		
18511	_	OsGAT3	_	gamma-aminobutyric acid transporter 3			1	LOC_Os01g63854.	 Biochemical character	Os01g0857400	LOC_Os01g63854.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0015185 - L-gamma-aminobutyric acid transmembrane transporter activity		
18512	_	OsGAT4	_	gamma-aminobutyric acid transporter 4			10	LOC_Os10g27980.	 Biochemical character	Os10g0415100	LOC_Os10g27980.1				GO:0016021 - integral to membrane		
18513	_	OsProT1	_	proline transporter 1			1	LOC_Os01g68050.	 Biochemical character	Os01g0908600	LOC_Os01g68050.2, LOC_Os01g68050.1				GO:0016021 - integral to membrane		
18514	_	OsProT3, ProT3	_	proline transporter 3			7	LOC_Os07g01090. Q69LA1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0100800	LOC_Os07g01090.2, LOC_Os07g01090.1				GO:0006865 - amino acid transport, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
18515	_	OsANT1	_	aromatic and neutral amino acid transporter 1			7	LOC_Os07g12770.	 Biochemical character	Os07g0231400	LOC_Os07g12770.1				GO:0016021 - integral to membrane		
18516	_	OsANT2	_	aromatic and neutral amino acid transporter 2			3	LOC_Os03g60260.	 Biochemical character	Os03g0817200	LOC_Os03g60260.1				GO:0016021 - integral to membrane		
18517	_	OsANT3	_	aromatic and neutral amino acid transporter 3			2	LOC_Os02g44980.	 Biochemical character	Os02g0670900	LOC_Os02g44980.1				GO:0016021 - integral to membrane		
18518	_	OsANT4, ANT4, FCO8	_	aromatic and neutral amino acid transporter 4, Functioning in Cesium Over-transport 8			4	LOC_Os04g47780.	 Biochemical character	Os04g0565500	LOC_Os04g47780.1				GO:0030001 - metal ion transport, GO:0016021 - integral to membrane		
18519	_	OsATL1	_	amino acid transporter-like 1			6	LOC_Os06g43700.	 Biochemical character	Os06g0644700	LOC_Os06g43700.1				GO:0006865 - amino acid transport, GO:0016021 - integral to membrane		
18520	_	OsATL2	_	amino acid transporter-like 2			9	LOC_Os09g26290.	 Biochemical character		LOC_Os09g26290				GO:0016021 - integral to membrane		
18521	_	OsATL3	_	amino acid transporter-like 3			2	LOC_Os02g49510.	 Biochemical character	Os02g0727100	LOC_Os02g49510.1				GO:0016021 - integral to membrane		
18522	_	OsATL5	_	amino acid transporter-like 5			6	LOC_Os06g42720.	 Biochemical character	Os06g0633800	LOC_Os06g42720.1				GO:0016021 - integral to membrane		
18523	_	OsATL6	_	amino acid transporter-like 6			2	LOC_Os02g09810	 Biochemical character	Os02g0191300	LOC_Os02g09810.3, LOC_Os02g09810.2, LOC_Os02g09810.1				GO:0016021 - integral to membrane		
18524	_	OsATL7	_	amino acid transporter-like 7			1	LOC_Os01g61044.	 Biochemical character	Os01g0825800	LOC_Os01g61044.2, LOC_Os01g61044.1				GO:0016021 - integral to membrane		
18525	_	OsATL8	_	amino acid transporter-like 8			11	LOC_Os11g19240.	 Biochemical character	Os11g0298000	LOC_Os11g19240.1				GO:0016021 - integral to membrane		
18526	_	OsATL9	_	amino acid transporter-like 9			2	LOC_Os02g54730.	 Biochemical character	Os02g0788800	LOC_Os02g54730.1				GO:0005774 - vacuolar membrane, GO:0016021 - integral to membrane		
18527	_	OsATL10	_	amino acid transporter-like 10			12	LOC_Os12g38570.	 Biochemical character	Os12g0574000	LOC_Os12g38570.1				GO:0016021 - integral to membrane		
18528	_	OsATL11, OsAux/LAX1, OSLAX1	_	amino acid transporter-like 11, OsAux/LAX1 protein			2	LOC_Os02g01100.	 Biochemical character	Os02g0101000	LOC_Os02g01100.3, LOC_Os02g01100.2, LOC_Os02g01100.1				GO:0009734 - auxin mediated signaling pathway, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity	
18529	_	OsATL12	_	amino acid transporter-like 12			6	LOC_Os06g12320.	 Biochemical character	Os06g0228500	LOC_Os06g12320.1				GO:0016021 - integral to membrane		
18530	_	OsATL13	_	amino acid transporter-like 13			4	LOC_Os04g38680.	 Biochemical character	Os04g0460300	LOC_Os04g38680.1				GO:0016021 - integral to membrane		
18532	_	OsATL15, ATL15	_	amino acid transporter-like 15			1	LOC_Os01g41420. BF889462.	 Biochemical character	Os01g0597600	LOC_Os01g41420.1				GO:0016021 - integral to membrane, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
18533	_	OsATL16, OsSTA21	_	amino acid transporter-like 16			1	LOC_Os01g41400. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0597400	LOC_Os01g41400.1				GO:0016021 - integral to membrane		PO:0009066 - anther 
18534	_	OsATL17, OsSTA19	_	amino acid transporter-like 17			1	LOC_Os01g40410. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0586500	LOC_Os01g40410.1				GO:0016021 - integral to membrane		PO:0009066 - anther 
18535	_	OsCAT1	_	cationic amino acid transporter 1			1	LOC_Os01g11160.	 Biochemical character	Os01g0209800	LOC_Os01g11160.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18536	_	OsCAT2	_	cationic amino acid transporter 2			2	LOC_Os02g43860.	 Biochemical character	Os02g0655700	LOC_Os02g43860.2, LOC_Os02g43860.1				GO:0031969 - chloroplast membrane, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006635 - fatty acid beta-oxidation, GO:0016558 - protein import into peroxisome matrix, GO:0005774 - vacuolar membrane		
18537	_	OsCAT3	_	cationic amino acid transporter 3			3	LOC_Os03g43970.	 Biochemical character	Os03g0641200	LOC_Os03g43970.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18538	_	OsCAT4, CAT4	_	cationic amino acid transporter 4, MEU22 homolog			3	LOC_Os03g45170. protein amino acid permease. an OsAM1-responsive rice meiotic gene.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0654400	LOC_Os03g45170.1				GO:0007126 - meiosis, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18539	_	OsCAT5	_	cationic amino acid transporter 5			4	LOC_Os04g45950.	 Biochemical character	Os04g0543600	LOC_Os04g45950.2, LOC_Os04g45950.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18540	_	OsCAT6	_	cationic amino acid transporter 6			6	LOC_Os06g34830.	 Biochemical character	Os06g0539400	LOC_Os06g34830.1				GO:0005886 - plasma membrane, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009741 - response to brassinosteroid stimulus		
18541	_	OsCAT7	_	cationic amino acid transporter 7			10	LOC_Os10g30090.	 Biochemical character	Os10g0437100	LOC_Os10g30090.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18542	_	OsCAT8	_	cationic amino acid transporter 8			11	LOC_Os11g05690.	 Biochemical character	Os11g0155500	LOC_Os11g05690.3, LOC_Os11g05690.2, LOC_Os11g05690.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18543	_	OsCAT9	_	cationic amino acid transporter 9			12	LOC_Os12g06060.	 Biochemical character	Os12g0156866	LOC_Os12g06060.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18544	_	OsCAT10	_	cationic amino acid transporter 10			12	LOC_Os12g41890.	 Biochemical character	Os12g0613100	LOC_Os12g41890.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18545	_	OsCAT11	_	cationic amino acid transporter 11			12	LOC_Os12g42850.	 Biochemical character	Os12g0623500	LOC_Os12g42850.3, LOC_Os12g42850.2, LOC_Os12g42850.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18546	_	OsBAT1	_	bi-directional amino acid transporter 1			1	LOC_Os01g42234. B9EXZ6.	 Biochemical character	Os01g0607200	LOC_Os01g42234.2, LOC_Os01g42234.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18547	_	OsBAT2	_	bi-directional amino acid transporter 2			1	LOC_Os01g71700.	 Biochemical character	Os01g0945100	LOC_Os01g71700.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18548	_	OsBAT3	_	bi-directional amino acid transporter 3			1	LOC_Os01g71710.	 Biochemical character	Os01g0945200	LOC_Os01g71710.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18549	_	OsBAT4	_	bi-directional amino acid transporter 4			1	LOC_Os01g71720.	 Biochemical character	Os01g0945300	LOC_Os01g71720.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18550	_	OsBAT5	_	bi-directional amino acid transporter 5			1	LOC_Os01g71740.	 Biochemical character	Os01g0945600	LOC_Os01g71740.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18551	_	OsBAT6	_	bi-directional amino acid transporter 6			1	LOC_Os01g71760.	 Biochemical character	Os01g0945700	LOC_Os01g71760.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18552	_	OsBAT7	_	bi-directional amino acid transporter 7			4	LOC_Os04g35540.	 Biochemical character	Os04g0435100	LOC_Os04g35540.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18553	_	OsLAT2	_				3	LOC_Os03g25840. a polyamine H+-symporter.	 Biochemical character	Os03g0374900	LOC_Os03g25840.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18554	_	OsLAT3	_				3	LOC_Os03g25869. a polyamine H+-symporter.	 Biochemical character	Os03g0375300	LOC_Os03g25869.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18555	_	OsLAT4	_				3	LOC_Os03g25920. a polyamine H+-symporter.	 Biochemical character	Os03g0375900/Os03g0375966					GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18556	_	OsLAT6	_				8	LOC_Os08g41370. a polyamine H+-symporter.	 Biochemical character	Os08g0525300	LOC_Os08g41370.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18557	RLCK103	GUDK, OsRLCK103	RECEPTOR-LIKE CYTOPLASMIC KINASE 103	GROWTH UNDER DROUGHT KINASE, Receptor-like Cytoplasmic Kinase 103	RECEPTOR-LIKE CYTOPLASMIC KINASE 103	gudk, gudk-1, gudk-2	3	LOC_Os03g08170.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0179400	LOC_Os03g08170.1				GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development	TO:0000457 - total biomass yield, TO:0000227 - root length, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000653 - seed development trait, TO:0000396 - grain yield, TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18558	_	RcbX, RbcX	_				8	LOC_Os08g32930. GO:0061077: chaperone-mediated protein folding. a chaperone for RuBisCO. RcbX in Ramegowda et al. 2014.	 Tolerance and resistance - Stress tolerance	Os08g0425200	LOC_Os08g32930.2, LOC_Os08g32930.1				GO:0009718 - anthocyanin biosynthetic process, GO:0009534 - chloroplast thylakoid, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
18559	_	Dfu584, Duf584, OsS40-1, S40-1	_	DUF584 domain-containing protein, S40 protein 1			5	LOC_Os08g32930.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0531100	LOC_Os05g45450.1				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
18560	LAC3	OsChI1, ChI1, OsLAC3	LACCASE 3	chilling inducible gene 1, lactase, lactase 3	LACCASE 3		1	a putative laccase precursor protein. LOC_Os01g61160. Q941X2. GO:0052716: hydroquinone:oxygen oxidoreductase activity. photosynthetic electron transport related gene. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0827300	LOC_Os01g61160.1				GO:0046688 - response to copper ion, GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005507 - copper ion binding, GO:0000302 - response to reactive oxygen species, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0046274 - lignin catabolic process	TO:0000276 - drought tolerance, TO:0000021 - copper sensitivity, TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009089 - endosperm 
18561	LAC21	OsLAC21	LACCASE 21	laccase 21	LACCASE 21		11	laccase-like multicopper oxidase. LMCO. LOC_Os11g01730. Q2RBK2. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0108700 	LOC_Os11g01730.1				GO:0009414 - response to water deprivation, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process, GO:0009651 - response to salt stress, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0048046 - apoplast	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18562	LAC27	OsLAC27	LACCASE 27	laccase 27	LACCASE 27		12	laccase-like multicopper oxidase. LMCO. LOC_Os12g01730. Q2QYS3. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os12g0108000	LOC_Os12g01730.1				GO:0046274 - lignin catabolic process, GO:0005507 - copper ion binding, GO:0048046 - apoplast		
18563	LAC12	OsLAC12	LACCASE 12	laccase 12	LACCASE 12		3	laccase-like multicopper oxidase. LMCO. LOC_Os03g18640.	 Biochemical character	Os03g0297900	LOC_Os03g18640.1				GO:0005507 - copper ion binding		PO:0009089 - endosperm 
18564	LAC9	OsLAC9	LACCASE 9	laccase 9	LACCASE 9		1	laccase-like multicopper oxidase. LMCO. LOC_Os01g63200. Q0JHP8. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os01g0850800	LOC_Os01g63200.1				GO:0046274 - lignin catabolic process, GO:0005507 - copper ion binding, GO:0048046 - apoplast		
18565	LAC8	OsLAC8, OsLAC7, LAC7	LACCASE 8	laccase 8	LACCASE 8		1	laccase-like multicopper oxidase. LMCO. LOC_Os01g63190. Q5N7B4. GO:0052716: hydroquinone:oxygen oxidoreductase activity. OsLAC7 in Swetha et al. 2018. miR397-targeted laccase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0850700	LOC_Os01g63190.3, LOC_Os01g63190.1				GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0046274 - lignin catabolic process	TO:0006001 - salt tolerance	PO:0009089 - endosperm 
18566	LAC5	OsLAC5	LACCASE 5	laccase 5	LACCASE 5		1	laccase-like multicopper oxidase. LMCO. LOC_Os01g62490. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os01g0842500	LOC_Os01g62490.1				GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast		
18567	LAC14	OsLAC14, OsLAC13, LAC13	LACCASE 14	lactase, laccase 14	LACCASE 14		5	laccase-like multicopper oxidase. LMCO. LOC_Os05g38410. Q0DHL2. GO:0052716: hydroquinone:oxygen oxidoreductase activity. photosynthetic electron transport related gene. OsLAC13 in Swetha et al. 2018.	 Biochemical character	Os05g0458500	LOC_Os05g38410.1				GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast		PO:0009030 - carpel , PO:0009038 - palea , PO:0009037 - lemma 
18569	LAC26	OsLAC26	LACCASE 26	laccase 26	LACCASE 26		11	laccase-like multicopper oxidase. LMCO. LOC_Os11g48060. Q0IQU1. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os11g0708100	LOC_Os11g48060.1				GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0009507 - chloroplast, GO:0005507 - copper ion binding		
18570	LAC2	OsLAC2	LACCASE 2	laccase 2	LACCASE 2		1	laccase-like multicopper oxidase. LMCO. LOC_Os01g44330. Q8RYM9. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os01g0634500	LOC_Os01g44330.1				GO:0048046 - apoplast, GO:0045492 - xylan biosynthetic process, GO:0010413 - glucuronoxylan metabolic process, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process		
18571	LAC10	OsLAC10	LACCASE 10	laccase 10	LACCASE 10		2	laccase-like multicopper oxidase. LMCO. LOC_Os02g51440. Q6Z8L2. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0749700	LOC_Os02g51440.1				GO:0010288 - response to lead ion, GO:0046274 - lignin catabolic process, GO:0046688 - response to copper ion, GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010038 - response to metal ion, GO:0046685 - response to arsenic, GO:0005507 - copper ion binding	TO:0000021 - copper sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity	
18572	LAC18	OsLAC18	LACCASE 18	laccase 18	LACCASE 18		10	laccase-like multicopper oxidase. LMCO. LOC_Os10g30120.	 Biochemical character		LOC_Os10g30120				GO:0005507 - copper ion binding		
18573	LAC1	OsLAC1	LACCASE 1	laccase 1	LACCASE 1		1	laccase-like multicopper oxidase. LMCO. LOC_Os01g27700. Q5ZCW1. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0374600	LOC_Os01g27700.1				GO:0010038 - response to metal ion, GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0046274 - lignin catabolic process	TO:0000034 - chromium sensitivity	
18574	LAC19	OsLAC19	LACCASE 19	laccase 19	LACCASE 19		10	laccase-like multicopper oxidase. LMCO. LOC_Os10g30140. Q7XE50. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0437400	LOC_Os10g30140.1				GO:0005507 - copper ion binding, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0010038 - response to metal ion, GO:0005739 - mitochondrion, GO:0048046 - apoplast, GO:0046274 - lignin catabolic process	TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity, TO:0000163 - auxin sensitivity	
18575	LAC25	OsLAC25	LACCASE 25	laccase 25	LACCASE 25		11	laccase-like multicopper oxidase. LMCO. LOC_Os11g47390. Q2QZ80. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os11g0696900	LOC_Os11g47390.1				GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process		
18576	_	OsDi19-1	_	drought-induced 19-1			5	LOC_Os05g48800. Q688X9.		Os05g0562200	LOC_Os05g48800.3, LOC_Os05g48800.2, LOC_Os05g48800.1						
18577	_	OsDi19-2	_	drought-induced 19-2			5	LOC_Os05g28980. Q5W794.		Os05g0358000	LOC_Os05g28980.6, LOC_Os05g28980.3, LOC_Os05g28980.2, LOC_Os05g28980.1						
18578	_	OsDi19-3	_	drought-induced 19-3			1	LOC_Os01g48190. Q5QMP3.	 Tolerance and resistance - Stress tolerance	Os01g0672400	LOC_Os01g48190.3, LOC_Os01g48190.2, LOC_Os01g48190.1				GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
18579	_	OsDi19-4, Di19-4	_	drought-induced 19-4, drought-induced 19 protein 4			2	LOC_Os02g20170. Q6H6E6. GO:0090333: regulation of stomatal closure. TO:0020097: stomatal opening.	 Tolerance and resistance - Stress tolerance	Os02g0304900	LOC_Os02g20170.1				GO:0006970 - response to osmotic stress, GO:0010187 - negative regulation of seed germination, GO:0010119 - regulation of stomatal movement, GO:0009737 - response to abscisic acid stimulus, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0000302 - response to reactive oxygen species, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000520 - stomatal closure rate, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
18580	_	OsDi19-5	_	drought-induced 19-5			1	LOC_Os01g73960. Q5JME8.		Os01g0971100	LOC_Os01g73960.2, LOC_Os01g73960.1						
18581	_	OsDi19-6	_	drought-induced 19-6			5	LOC_Os05g01730. Q7XBA5.		Os05g0107900	LOC_Os05g01730.3, LOC_Os05g01730.2, LOC_Os05g01730.1						
18582	_	OsDi19-7	_	drought-induced 19-7			12	LOC_Os12g36900.		Os12g0556100	LOC_Os12g36900.1						
18583	_	OsGME1, GME1	_	GDP-D-mannose-3', 5'-epimerase 1, GDP-D-mannose epimerase 1		osgme1-1, osgme1-2	10	an AsA (ascorbate) biosynthetic gene. A3C4S4. BF889452.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os10g0417600	LOC_Os10g28200.2, LOC_Os10g28200.1				GO:0050662 - coenzyme binding, GO:0050832 - defense response to fungus, GO:0010043 - response to zinc ion, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0047918 - GDP-mannose 3,5-epimerase activity	TO:0000382 - 1000-seed weight, TO:0000436 - spikelet sterility, TO:0000351 - zinc sensitivity, TO:0000448 - filled grain percentage, TO:0000074 - blast disease, TO:0000371 - yield trait	
18585	GL3.2	GL3.2	GRAIN LENGTH 3.2	Grain Length 3.2			3	a CYP78A13 paralog. LOC_Os03g30420.	 Biochemical character,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os03g0417700	LOC_Os03g30420.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0080113 - regulation of seed growth	TO:0000397 - grain size, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000391 - seed size	
18586	_	OsMULE-JSS1	_	OsMULE-japonica specific sequence 1, OsMULE/JSS element 1, Mutator-like element JSS1			1	AP003286: 37694124-37696640.	 Other						GO:0032196 - transposition		
18587	_	OsMULE-JS2	_	Mutator-like element JS2			1	AP003343: 30249273-30249408. an OsMULE element in japonica rice cultivar.	 Other						GO:0032196 - transposition		
18588	_	OsMULE-JS3	_	Mutator-like element JS3			2	AP005115: 33673076-33673214. an OsMULE element in japonica rice cultivar.	 Other						GO:0032196 - transposition		
18589	_	OsMULE-JS4	_	Mutator-like element JS4			2	AP005287: 32267864-32267999. an OsMULE element in japonica rice cultivar.	 Other						GO:0032196 - transposition		
18590	_	OsMULE-JS5	_	Mutator-like element JS5			11	AC120984: 23547301-23547436.	 Other						GO:0032196 - transposition		
18591	_	OsMULE-IS6	_	Mutator-like element IS6			1	an OsMULE element in indica rice cultivar.	 Other						GO:0032196 - transposition		
18592	_	OsMULE-IS7	_	Mutator-like element IS7			1	an OsMULE element in indica rice cultivar.	 Other						GO:0032196 - transposition		
18593	_	OsMULE-IS8	_	Mutator-like element IS8			2	an OsMULE element in indica rice cultivar.	 Other						GO:0032196 - transposition		
18594	_	OsMULE-IS9	_	Mutator-like element IS9			5	an OsMULE element in indica rice cultivar.	 Other						GO:0032196 - transposition		
18595	_	OsMSH4, MSH4	_	the rice homolog of MSH4, MutS-homolog 4		Osmsh4, Osmsh4-1, Osmsh4-2, Osmsh4-3, Osmsh4-4	7	MutS protein. LOC_Os07g30240.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os07g0486000	LOC_Os07g30240.1				GO:0000794 - condensed nuclear chromosome, GO:0007276 - gamete generation, GO:0007062 - sister chromatid cohesion, GO:0007129 - synapsis, GO:0007067 - mitosis, GO:0007126 - meiosis, GO:0005634 - nucleus, GO:0006312 - mitotic recombination, GO:0010777 - meiotic mismatch repair involved in reciprocal meiotic recombination, GO:0030983 - mismatched DNA binding, GO:0051026 - chiasma formation, GO:0010332 - response to gamma radiation, GO:0032204 - regulation of telomere maintenance, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0032504 - multicellular organism reproduction, GO:0045132 - meiotic chromosome segregation, GO:0042138 - meiotic DNA double-strand break formation, GO:0006302 - double-strand break repair, GO:0043247 - telomere maintenance in response to DNA damage, GO:0043073 - germ cell nucleus, GO:0005524 - ATP binding, GO:0000911 - cytokinesis by cell plate formation, GO:0048229 - gametophyte development, GO:0010564 - regulation of cell cycle process	TO:0000053 - pollen sterility	
18598	_	OsCEP1, CEP1	_	C-TERMINALLY ENCODED PEPTIDE 1			3	LOC_Os03g27680.		Os03g0394200	LOC_Os03g27680.1						PO:0009005 - root 
18599	_	OsCEP2, CEP2, OsCEP4, CEP4	_	C-TERMINALLY ENCODED PEPTIDE 2			3	LOC_Os03g27690. OsCEP2 and OsCEP4 in Sui et al. 2016. The full length cDNA sequence of OsCEP2 (EAY90324.1, 93-11) was likely the same as that of OsCEP4 (AAP04189.1, Nipponbare), because they were mapped to the same position on the short arm of chromosome 3 with only one SNP between them, which was most likely caused by different subspecies (Sui et al. 2016).			LOC_Os03g27690						PO:0009005 - root 
18600	_	OsCEP3, CEP3	_	C-TERMINALLY ENCODED PEPTIDE 3			3	LOC_Os03g27740.			LOC_Os03g27740						PO:0009005 - root 
18601	_	OsCEP5, CEP5	_	C-TERMINALLY ENCODED PEPTIDE 5			9	LOC_Os09g28780. TO:0000847: panicle anatomy and morphology trait.	 Reproductive organ - panicle		LOC_Os09g28780						PO:0009049 - inflorescence 
18602	_	OsCEP6, CEP6, OsCEP6.1, CEP6.1	_	C-TERMINALLY ENCODED PEPTIDE 6			8	LOC_Os08g37070. TO:0000847: panicle anatomy and morphology trait. OsCEP6.1 in Sui et al. 2016. GO:2000280: regulation of root development.	 Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - panicle,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os08g0475500	LOC_Os08g37070.1				GO:0048831 - regulation of shoot development, GO:0009735 - response to cytokinin stimulus, GO:0080050 - regulation of seed development, GO:0048364 - root development, GO:0006995 - cellular response to nitrogen starvation, GO:0010229 - inflorescence development, GO:0008361 - regulation of cell size	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000227 - root length, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0000149 - seed width, TO:0000734 - grain length, TO:0000402 - grain width, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000575 - endosperm related trait, TO:0000391 - seed size, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000654 - shoot development trait, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity	PO:0009049 - inflorescence , PO:0007520 - root development stage , PO:0007089 - stem elongation stage , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
18603	_	OsCEP7, CEP7, OsCEP7.1, CEP7.1	_	C-TERMINALLY ENCODED PEPTIDE 7			6	OsCEP7.1 in Sui et al. 2016.		Os06g0710001							
18604	_	OsHyPRP02, HyP/GRP02, OsHyPRP2, HyP/GRP2	_	hybrid proline- or glycine-rich protein 2			2	LOC_Os02g44320.		Os02g0662100 	LOC_Os02g44320.1						
18605	_	OsHyPRP03, HyP/GRP03, OsHyPRP3, HyP/GRP3, LTP1	_	hybrid proline- or glycine-rich protein 3			3	LOC_Os03g01300. KC611132-KC611144 (O. sativa and wild rice species, complete cds).		Os03g0103100 	LOC_Os03g01300.1						
18606	_	OsHyPRP04, HyP/GRP04, OsHyPRP4, HyP/GRP4	_	hybrid proline- or glycine-rich protein 4			3	LOC_Os03g01300.		Os03g0103200 	LOC_Os03g01300.1						
18607	_	OsHyPRP06, HyP/GRP06, OsHyPRP6, HyP/GRP6	_	hybrid proline- or glycine-rich protein 6			4	LOC_Os04g46810.		Os04g0554500 	LOC_Os04g46810.1						
18608	_	OsHyPRP07, HyP/GRP07, OsHyPRP7, HyP/GRP7	_	hybrid proline- or glycine-rich protein 7			4	LOC_Os04g46820.		Os04g0554600 	LOC_Os04g46820.1						
18609	_	OsHyPRP08, HyP/GRP08, OsHyPRP8, HyP/GRP8	_	hybrid proline- or glycine-rich protein 8			4	AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.		Os04g0554800 	LOC_Os04g46830.1, LOC_Os04g46830.2						
18610	_	OsHyPRP09, HyP/GRP09, OsHyPRP9, HyP/GRP9	_	hybrid proline- or glycine-rich protein 9			10	LOC_Os10g20830.		Os10g0349300 	LOC_Os10g20830.1						
18611	_	OsHyPRP10, HyP/GRP10	_	hybrid proline- or glycine-rich protein 10			10	LOC_Os10g20840.		Os10g0349400 	LOC_Os10g20840.1						
18612	_	OsHyPRP11, HyP/GRP11	_	hybrid proline- or glycine-rich protein 11			10	LOC_Os10g20860.		Os10g0349600 	LOC_Os10g20860.1						
18613	_	OsHyPRP12, HyP/GRP12	_	hybrid proline- or glycine-rich protein 12			10	LOC_Os10g20890.		Os10g0349900 	LOC_Os10g20890.1						
18614	_	OsHyPRP14, HyP/GRP14	_	hybrid proline- or glycine-rich protein 14			10	LOC_Os10g40440.		Os10g0551900 	LOC_Os10g40440.1						
18615	_	OsHyPRP15, HyP/GRP15	_	hybrid proline- or glycine-rich protein 15			10	LOC_Os10g40460.			LOC_Os10g40460						
18616	_	OsHyPRP16, HyP/GRP16	_	hybrid proline- or glycine-rich protein 16			10	LOC_Os10g40470.		Os10g0552200 	LOC_Os10g40470.1						
18617	_	OsHyPRP17, HyP/GRP17	_	hybrid proline- or glycine-rich protein 17			10	LOC_Os10g40480.		Os10g0552300 	LOC_Os10g40480.1						
18618	_	OsHyPRP18, HyP/GRP18	_	hybrid proline- or glycine-rich protein 18			10	LOC_Os10g40510.		Os10g0552600 	LOC_Os10g40510.1						
18619	_	OsHyPRP19, HyP/GRP19	_	hybrid proline- or glycine-rich protein 19			10	LOC_Os10g40520.		Os10g0552700 	LOC_Os10g40520.1						
18620	_	OsHyPRP20, HyP/GRP20	_	hybrid proline- or glycine-rich protein 20			10	LOC_Os10g40530.		Os10g0552800 	LOC_Os10g40530.1						
18621	_	OsHyPRP21, HyP/GRP21	_	hybrid proline- or glycine-rich protein 21			10	LOC_Os10g40614. a paralogous gene of qLTG3-1. AB973302, AB973303, AB973304.	 Biochemical character,  Seed - Physiological traits - Dormancy	Os10g0554800	LOC_Os10g40614.1				GO:0008233 - peptidase activity, GO:0009845 - seed germination	TO:0000253 - seed dormancy	
18622	_	OsCDKC;2, OsCDK2	_	CYCLIN-DEPENDENT KINASE C;2, C-type cyclin-dependent kinase 2, Cyclin-dependent kinase C-2			3	LOC_Os03g22700.	 Biochemical character	Os03g0349200	LOC_Os03g22700.1				GO:0051726 - regulation of cell cycle, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18623	_	OsCYCP4;3	_	P-type cyclin 4;3			2	LOC_Os02g03294. a PHO80 homologous protein.	 Biochemical character	Os02g0125400	LOC_Os02g03294.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity		
18624	_	OsCYCP4;4	_	P-type cyclin 4;4			4	LOC_Os04g46000. a PHO80 homologous protein.	 Biochemical character	Os04g0544200	LOC_Os04g46000.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity		
18625	_	OsPP2C73, PP2C73, OsPP116	_	protein phosphatase 2C73, protein phosphatase 2C 73, protein phosphatase 116			11	LOC_Os11g01790. Q2RBJ6. 		Os11g0109000	LOC_Os11g01790.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
18626	_	OsPP5	_	Protein phosphatase 5			1	LOC_Os01g24750.		Os01g0349400	LOC_Os01g24750.1				GO:0004721 - phosphoprotein phosphatase activity		
18627	_	OsPP13, PPP6	_	Protein phosphatase 13, Serine/threonine-protein phosphatase 6			1	LOC_Os01g49690.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0691700	LOC_Os01g49690.1				GO:0048653 - anther development, GO:0004721 - phosphoprotein phosphatase activity		PO:0001004 - anther development stage 
18628	_	OsPP14	_	Protein phosphatase 14			1	LOC_Os01g53710.		Os01g0739200	LOC_Os01g53710.1				GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046855 - inositol phosphate dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
18629	_	OsPP16	_	Protein phosphatase 16			1	LOC_Os01g64010.		Os01g0859400	LOC_Os01g64010.2, LOC_Os01g64010.1				GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0046855 - inositol phosphate dephosphorylation, GO:0006470 - protein amino acid dephosphorylation, GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity		
18630	_	OsPP17	_	Protein phosphatase 17			1	LOC_Os01g74530.		Os01g0976700	LOC_Os01g74530.2				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
18631	_	OsPP23	_	Protein phosphatase 23			2	LOC_Os02g17970.		Os02g0281000	LOC_Os02g17970.2, LOC_Os02g17970.1				GO:0008603 - cAMP-dependent protein kinase regulator activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0004722 - protein serine/threonine phosphatase activity, GO:0005952 - cAMP-dependent protein kinase complex, GO:0005886 - plasma membrane		
18632	_	OsPP38	_	Protein phosphatase 38			2	LOC_Os02g48840.		Os02g0720300	LOC_Os02g48840.1				GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0043407 - negative regulation of MAP kinase activity, GO:0005634 - nucleus, GO:0004725 - protein tyrosine phosphatase activity		
18633	_	OsPP32	_	Protein phosphatase 32			2	LOC_Os02g39470. Q6K1Z1.		Os02g0607400/Os02g0607433					GO:0007049 - cell cycle, GO:0005634 - nucleus, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
18634	_	OsPP41	_	Protein phosphatase 41			2	LOC_Os02g57450.		Os02g0820000	LOC_Os02g57450.2, LOC_Os02g57450.1				GO:0004721 - phosphoprotein phosphatase activity		
18635	_	OsPP42	_	Protein phosphatase 42			3	LOC_Os03g01750.		Os03g0107800	LOC_Os03g01750.7, LOC_Os03g01750.6, LOC_Os03g01750.5, LOC_Os03g01750.4, LOC_Os03g01750.2, LOC_Os03g01750.1						
18636	_	OsPP44, PP44	_	Protein phosphatase 44			3	LOC_Os03g07150. male sterility protein. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0167700	LOC_Os03g07150.2, LOC_Os03g07150.1				GO:0007126 - meiosis, GO:0004721 - phosphoprotein phosphatase activity		
18637	_	OsPP47, PP47	_	Protein phosphatase 47			3	LOC_Os03g16110. P48489. Ser/Thr protein phosphatase family protein. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0268000	LOC_Os03g16110.3, LOC_Os03g16110.2, LOC_Os03g16110.1				GO:0007126 - meiosis, GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
18638	_	OsPP52	_	Protein phosphatase 52			3	LOC_Os03g25600. GO:0071555: cell wall organization.		Os03g0372500	LOC_Os03g25600.2, LOC_Os03g25600.1				GO:0005634 - nucleus, GO:0005543 - phospholipid binding, GO:0046872 - metal ion binding, GO:0000911 - cytokinesis by cell plate formation, GO:0010074 - maintenance of meristem identity, GO:0000226 - microtubule cytoskeleton organization, GO:0006406 - mRNA export from nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0043687 - post-translational protein modification, GO:0009909 - regulation of flower development, GO:0009934 - regulation of meristem structural organization, GO:0048765 - root hair cell differentiation, GO:0010090 - trichome morphogenesis, GO:0005886 - plasma membrane, GO:0004722 - protein serine/threonine phosphatase activity, GO:0045010 - actin nucleation, GO:0007155 - cell adhesion		
18639	_	OsPP53	_	Protein phosphatase 53			3	LOC_Os03g27780.		Os03g0395100	LOC_Os03g27780.2, LOC_Os03g27780.1						
18640	_	OsPP56, PP56, OsPP2Ac-2, PP2Ac-2	_	Protein phosphatase 56, Phosphatase 2A isoform 2			3	LOC_Os03g59060. Q10BT5. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0805300	LOC_Os03g59060.2, LOC_Os03g59060.1				GO:0007126 - meiosis, GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding, GO:0005737 - cytoplasm		
18641	_	OsPP57	_	Protein phosphatase 57			3	LOC_Os03g59470.		Os03g0809300	LOC_Os03g59470.1				GO:0003824 - catalytic activity		
18642	_	OsPP58	_	Protein phosphatase 58			3	LOC_Os03g59530.		Os03g0809700	LOC_Os03g59530.1				GO:0016301 - kinase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity		
18643	_	OsPP62, OsSTA117	_	Protein phosphatase 62			4	LOC_Os04g17130. Q7XWS7. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0245000	LOC_Os04g17130.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0045010 - actin nucleation, GO:0005884 - actin filament		PO:0009066 - anther 
18644	_	OsPP74	_	Protein phosphatase 74			5	LOC_Os05g11550. GO:1902325: negative regulation of chlorophyll biosynthetic process.		Os05g0204900	LOC_Os05g11550.2, LOC_Os05g11550.1				GO:0006913 - nucleocytoplasmic transport, GO:0009506 - plasmodesma, GO:0031965 - nuclear membrane, GO:0030176 - integral to endoplasmic reticulum membrane, GO:0005829 - cytosol, GO:0010017 - red or far red light signaling pathway, GO:0006470 - protein amino acid dephosphorylation, GO:0010019 - chloroplast-nucleus signaling pathway, GO:0046906 - tetrapyrrole binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding		
18645	_	OsPP77	_	Protein phosphatase 77			5	LOC_Os05g44910.		Os05g0524200	LOC_Os05g44910.1				GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0046855 - inositol phosphate dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity		
18646	_	OsPP82	_	Protein phosphatase 82			6	LOC_Os06g05870.		Os06g0152000	LOC_Os06g05870.2, LOC_Os06g05870.1				GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0004725 - protein tyrosine phosphatase activity, GO:0043407 - negative regulation of MAP kinase activity		
18647	_	OsPP83	_	Protein phosphatase 83			6	LOC_Os06g06880.		Os06g0164100	LOC_Os06g06880.1				GO:0004721 - phosphoprotein phosphatase activity		
18648	_	OsPP99	_	Protein phosphatase 99			7	LOC_Os07g49040.		Os07g0690400	LOC_Os07g49040.1				GO:0003824 - catalytic activity		
18649	_	OsPP100	_	Protein phosphatase 100			8	LOC_Os08g29160.		Os08g0379300	LOC_Os08g29160.1				GO:0009570 - chloroplast stroma, GO:0019203 - carbohydrate phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0000023 - maltose metabolic process, GO:0043085 - positive regulation of catalytic activity, GO:0006470 - protein amino acid dephosphorylation, GO:0019252 - starch biosynthetic process, GO:0005983 - starch catabolic process, GO:0009569 - chloroplast starch grain		
18650	_	OsPP101	_	Protein phosphatase 101			8	LOC_Os08g35440.		Os08g0455600	LOC_Os08g35440.1				GO:0004721 - phosphoprotein phosphatase activity		
18651	_	OsPP103	_	Protein phosphatase 103			8	LOC_Os08g40200.		Os08g0513000	LOC_Os08g40200.1				GO:0004721 - phosphoprotein phosphatase activity		
18652	_	OsPP104	_	Protein phosphatase 104			8	LOC_Os08g44320.		Os08g0557400	LOC_Os08g44320.1				GO:0004725 - protein tyrosine phosphatase activity		
18653	_	OsPP106	_	Protein phosphatase 106			9	LOC_Os09g11230.		Os09g0284200	LOC_Os09g11230.1				GO:0004721 - phosphoprotein phosphatase activity		
18654	_	OsPP112, PP112, OsPP2Ac-4, PP2Ac-4	_	Protein phosphatase 112, phosphatase 2A isoform 4			10	LOC_Os10g27050. A3C4N5.		Os10g0410600	LOC_Os10g27050.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005737 - cytoplasm		
18655	_	OsPP113	_	Protein phosphatase 113			10	LOC_Os10g39540.		Os10g0541200	LOC_Os10g39540.4, LOC_Os10g39540.3, LOC_Os10g39540.2, LOC_Os10g39540.1				GO:0003824 - catalytic activity		
18656	_	OsPP115	_	Protein phosphatase 115			10	LOC_Os10g41240.		Os10g0561900	LOC_Os10g41240.2, LOC_Os10g41240.1				GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0046855 - inositol phosphate dephosphorylation, GO:0006470 - protein amino acid dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity		
18657	_	OsPP117	_	Protein phosphatase 117			11	LOC_Os11g02180.		Os11g0113100	LOC_Os11g02180.1				GO:0009507 - chloroplast, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
18658	_	OsPP118	_	Protein phosphatase 118			11	LOC_Os11g04180.		Os11g0136800	LOC_Os11g04180.1				GO:0004725 - protein tyrosine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
18659	_	OsPP119	_	Protein phosphatase 119			11	LOC_Os11g11070.		Os11g0217500	LOC_Os11g11070.2, LOC_Os11g11070.1				GO:0006370 - mRNA capping, GO:0004484 - mRNA guanylyltransferase activity		
18660	_	OsPP123	_	Protein phosphatase 123			12	LOC_Os12g01770.		Os12g0108600	LOC_Os12g01770.1				GO:0003824 - catalytic activity		
18661	_	OsPP124	_	Protein phosphatase 124			12	LOC_Os12g02120.		Os12g0112500	LOC_Os12g02120.2, LOC_Os12g02120.1						
18662	_	OsPP125	_	Protein phosphatase 125			12	LOC_Os12g03990.		Os12g0133700	LOC_Os12g03990.1				GO:0004725 - protein tyrosine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
18663	_	OsPP127, OsPTP1, PTP1	_	Protein phosphatase 127, protein tyrosine phosphatase 1			12	LOC_Os12g07590. OsPTP1 in Ueno et al. 2015.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0174800	LOC_Os12g07590.3, LOC_Os12g07590.2, LOC_Os12g07590.1				GO:0051707 - response to other organism, GO:0004725 - protein tyrosine phosphatase activity, GO:0009628 - response to abiotic stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000112 - disease resistance	
18664	_	OsPP128	_	Protein phosphatase 128			12	LOC_Os12g09120.		Os12g0193200	LOC_Os12g09120.1				GO:0004651 - polynucleotide 5'-phosphatase activity, GO:0004725 - protein tyrosine phosphatase activity, GO:0004484 - mRNA guanylyltransferase activity, GO:0005634 - nucleus, GO:0006370 - mRNA capping, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
18665	_	OsPP130	_	Protein phosphatase 130			12	LOC_Os12g21890.		Os12g0407500	LOC_Os12g21890.1				GO:0004725 - protein tyrosine phosphatase activity		
18666	RLCK176	OsRLCK176	RECEPTOR-LIKE CYTOPLASMIC KINASE 176	receptor-like cytoplasmic kinase 176	RECEPTOR-LIKE CYTOPLASMIC KINASE 176	osrlck176, osrlck176-1, osrlck176-2	5	LOC_Os05g02020. a rice homolog of AtBIK1. GO:0061057: peptidoglycan recognition protein signaling pathway. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os05g0110900	LOC_Os05g02020.2, LOC_Os05g02020.1				GO:0002237 - response to molecule of bacterial origin, GO:0005524 - ATP binding, GO:0031347 - regulation of defense response, GO:0043067 - regulation of programmed cell death, GO:0052033 - pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity, GO:0002238 - response to molecule of fungal origin, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity	
18667	RLCK284	OsRLCK284	RECEPTOR-LIKE CYTOPLASMIC KINASE 284	Receptor-like Cytoplasmic Kinase 284	RECEPTOR-LIKE CYTOPLASMIC KINASE 284		9	LOC_Os09g39930.	 Tolerance and resistance - Stress tolerance	Os09g0572600 	LOC_Os09g39930.1				GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0006001 - salt tolerance	
18668	SHR2	OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15	SHORT ROOT GENE 2	rice SHORT  ROOT gene2, SHORT-ROOT 2, SHORTROOT2, SHORT-ROOT protein 2, GRAS protein 15	PROTEIN SHORT-ROOT 2		3	LOC_Os03g31880. Q75I13. A2XIA8. one of  the two rice orthologs of the Arabidopsis SHR gene. ZmSHR1 sequence (GRMZM2G132794) is orthologous to OsSHR2 (Schuler et al. 2018).	 Vegetative organ - Leaf,  Vegetative organ - Root	Os03g0433200	LOC_Os03g31880.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0051302 - regulation of cell division, GO:0048364 - root development, GO:0006351 - transcription, DNA-dependent	TO:0000656 - root development trait, TO:0000306 - root thickness, TO:0000735 - plastochron, TO:0000227 - root length, TO:0000043 - root anatomy and morphology trait	PO:0000258 - root cortex , PO:0007520 - root development stage , PO:0020138 - leaf lamina vein 
18669	SCR1	OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41	SCARECROW 1	GRAS protein 41	SCARECROW 1		11	LOC_Os11g03110. Q2RB59. A2ZAX5. OsSCR in Zhou et al. 2014.	 Other	Os11g0124300	LOC_Os11g03110.1				GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
18670	PP2A-B''	OsPP2A-B''	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B''	protein phosphatase 2A B'' subunit, B'' regulatory subunit of protein phosphatase 2A	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B''		10			Os10g0476600	LOC_Os10g33680.1				GO:0005509 - calcium ion binding		
18671	_	OsCrRLK1L1	_	Catharanthus roseus receptor-like kinase1-like kinase 1			3	LOC_Os03g55210.		Os03g0759600	LOC_Os03g55210.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
18673	_	OsCrRLK1L3	_	Catharanthus roseus receptor-like kinase1-like kinase 3			5	LOC_Os05g25450.		Os05g0318700	LOC_Os05g25450.2, LOC_Os05g25450.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0007623 - circadian rhythm		PO:0025034 - leaf 
18674	_	OsCrRLK1L4	_	Catharanthus roseus receptor-like kinase1-like kinase 4			1	LOC_Os01g06280.		Os01g0155500	LOC_Os01g06280.2, LOC_Os01g06280.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0007623 - circadian rhythm, GO:0004674 - protein serine/threonine kinase activity		PO:0025034 - leaf 
18675	_	OsCrRLK1L6	_	Catharanthus roseus receptor-like kinase1-like kinase 6			3	LOC_Os03g03280.		Os03g0124200	LOC_Os03g03280.1				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009005 - root 
18676	_	OsCrRLK1L7	_	Catharanthus roseus receptor-like kinase1-like kinase 7			3	LOC_Os03g17300.		Os03g0281500	LOC_Os03g17300.4, LOC_Os03g17300.3, LOC_Os03g17300.2, LOC_Os03g17300.1				GO:0007623 - circadian rhythm, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		PO:0025034 - leaf 
18677	DRUS1	OsCrRLK1L8, CrRLK1L8, FLR1	DWARF AND RUNTISH SPIKELET1	Catharanthus roseus receptor-like kinase1-like kinase 8, FERONIA-Like Receptor kinase 1, DWARF AND RUNTISH SPIKELET 1		flr1, drus1-1, drus1-2	3	LOC_Os03g21540. rice ortholog of Arabidopsis thaliana FERONIA.	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0333200	LOC_Os03g21540.1				GO:0048653 - anther development, GO:0019252 - starch biosynthetic process, GO:0043610 - regulation of carbohydrate utilization, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0016020 - membrane	TO:0000040 - panicle length, TO:0000564 - spikelet width, TO:0000392 - sterility or fertility trait, TO:0000366 - reproductive growth time, TO:0006036 - stem elongation, TO:0000621 - inflorescence development trait, TO:0000180 - spikelet fertility, TO:0000696 - starch content, TO:0000657 - spikelet anatomy and morphology trait, TO:0000207 - plant height, TO:0000531 - anther length, TO:0000187 - anther color, TO:0000547 - primary branch number	PO:0001004 - anther development stage , PO:0007089 - stem elongation stage , PO:0001083 - inflorescence development stage 
18679	_	OsCrRLK1L10	_	Catharanthus roseus receptor-like kinase1-like kinase 10			5	LOC_Os05g06990.	 Tolerance and resistance - Stress tolerance	Os05g0162500	LOC_Os05g06990.1				GO:0005886 - plasma membrane, GO:0048364 - root development, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009005 - root , PO:0007520 - root development stage 
18680	_	OsCrRLK1L12	_	Catharanthus roseus receptor-like kinase1-like kinase 12			5	LOC_Os05g25350.		Os05g0317700	LOC_Os05g25350.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0007623 - circadian rhythm		PO:0025034 - leaf 
18682	_	OsCrRLK1L14	_	Catharanthus roseus receptor-like kinase1-like kinase 14			6	LOC_Os06g22810.	 Tolerance and resistance - Stress tolerance	Os06g0334300	LOC_Os06g22810.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0048364 - root development, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	PO:0009005 - root , PO:0007520 - root development stage 
18683	_	OsCrRLK1L15	_	Catharanthus roseus receptor-like kinase1-like kinase 15			7	LOC_Os07g05370.		Os07g0147600	LOC_Os07g05370.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity		PO:0009005 - root 
18684	_	OsCrRLK1L16	_	Catharanthus roseus receptor-like kinase1-like kinase 16			10	LOC_Os10g39010.		Os10g0534500	LOC_Os10g39010.5, LOC_Os10g39010.4, LOC_Os10g39010.3, LOC_Os10g39010.2, LOC_Os10g39010.1				GO:0007623 - circadian rhythm, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0025034 - leaf 
18685	_	SAD1	_	super apical dormant 1		sad1-1	8	an ortholog of RPA34.5 (RNA polymerase I subunit A34.5).	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root	Os08g0422600	LOC_Os08g32690.1				GO:0048364 - root development	TO:0000135 - leaf length, TO:0000235 - liguleless, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000226 - auricleless	PO:0007033 - whole plant development stage , PO:0007520 - root development stage , PO:0020106 - leaf sheath auricle , PO:0020105 - ligule 
18686	_	OsMED4	_	Mediator complex protein OsMED4			9	a component of the middle module of the Mediator complex. GO:0001104: RNA polymerase II transcription cofactor activity.		Os09g0540500	LOC_Os09g36890.2, LOC_Os09g36890.1				GO:0016592 - mediator complex		
18687	_	OsTFIIF2-1, OsRAP30-1	_	OsTFIIF2-1 of Pol II, OsTFIIF2-1 of RNA polymerase II			5	TFIIF2 ortholog. the counterpart of RPA34.5 in Pol II.		Os05g0509900	LOC_Os05g43450.1				GO:0006367 - transcription initiation from RNA polymerase II promoter, GO:0003743 - translation initiation factor activity, GO:0005524 - ATP binding, GO:0005674 - transcription factor TFIIF complex		
18688	_	OsTFIIF2-2, OsRAP30-2	_	OsTFIIF2-2 of Pol II, OsTFIIF2-2 of RNA polymerase II			1	TFIIF2 ortholog. the counterpart of RPA34.5 in Pol II.		Os01g0772200	LOC_Os01g56550.3, LOC_Os01g56550.2, LOC_Os01g56550.1				GO:0006367 - transcription initiation from RNA polymerase II promoter, GO:0005674 - transcription factor TFIIF complex, GO:0005524 - ATP binding		
18689	DGS1	OsRPC53, RPC4	DUPLICATED GAMETOPHYTIC STERILITY 1 	RPC53 of Pol III complex, RPC53 of RNA polymerase III, DNA-dependent RNA polymerase (RNAP) III subunit C4	DNA-DEPENDENT RNA POLYMERASE III SUBUNIT C4 		4	an RPC53 ortholog. the counterpart of RPA34.5 in Pol III. AB758279 (Oryza sativa), AB758280 (Oryza nirvara).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0394500	LOC_Os04g32350.1				GO:0005666 - DNA-directed RNA polymerase III complex, GO:0003677 - DNA binding, GO:0006383 - transcription from RNA polymerase III promoter	TO:0000053 - pollen sterility	
18690	_	SAD1L	_	SAD1LIKE			1			Os01g0259900	LOC_Os01g15520.1						
18691	_	OsRPA49	_	Pol I subunit RPA49, RNA polymerase II subunit RPA49			11	the rice ortholog of RPA49.		Os11g0615100	LOC_Os11g40090.2, LOC_Os11g40090.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003899 - DNA-directed RNA polymerase activity		
18692	_	OsMED7, MED7, OsMed7_1, Med7_1	_	Mediator complex protein OsMED7, Mediator 7_1			4	GO:0001104: RNA polymerase II transcription cofactor activity. LOC_Os04g56640. OsMed7_1 in Malik et al. 2016.	 Other	Os04g0661800	LOC_Os04g56640.3, LOC_Os04g56640.2, LOC_Os04g56640.1				GO:0016592 - mediator complex		
18693	_	OsMED21, MED21, OsMed21_1, Med21_1	_	Mediator complex protein OsMED21, Mediator 21_1			8	OsMed21_1 in Malik et al. 2016. LOC_Os08g04150.	 Other	Os08g0135600	LOC_Os08g04150.1				GO:0050832 - defense response to fungus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0016592 - mediator complex		
18694	_	OsMED6, MED6, OsMed6_1, Med6_1	_	Mediator complex protein OsMED6, Mediator 6_1			6	GO:0001104: RNA polymerase II transcription cofactor activity. LOC_Os06g11370. OsMed6_1 in Malik et al. 2016.	 Other	Os06g0217500	LOC_Os06g11370.1				GO:0016592 - mediator complex		
18695	_	OsMED9, MED9, OsMED9_1, MED9_1	_	Mediator complex protein OsMED9, Mediator 9_1			1	OsMED9_1 in Malik et al. 2016. LOC_Os01g31629.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os01g0501000	LOC_Os01g31629.3, LOC_Os01g31629.2, LOC_Os01g31629.1					TO:0000396 - grain yield, TO:0000382 - 1000-seed weight	
18696	_	OsMED10, MED10, OsMed10_1, Med10_1	_	Mediator complex protein OsMED10, Mediator 10_1			9	GO:0001104: RNA polymerase II transcription cofactor activity . OsMed10_1 in Malik et al. 2016. LOC_Os09g35920.	 Other	Os09g0528300	LOC_Os09g35920.2, LOC_Os09g35920.1				GO:0016592 - mediator complex		
18697	_	OsMED31a, MED31a, OsMed31_1, Med31_1	_	Mediator complex protein OsMED31a, Mediator 31_1			7	GO:0001104: RNA polymerase II transcription cofactor activity. OsMed31_1 in Malik et al. 2016. LOC_Os07g07020.	 Other	Os07g0164600	LOC_Os07g07020.2, LOC_Os07g07020.1				GO:0016592 - mediator complex		
18698	_	OsMED31b, MED31b, OsMed31_2, Med31_2	_	Mediator complex protein OsMED31b, Mediator 31_2			10	GO:0001104: RNA polymerase II transcription cofactor activity. LOC_Os10g41450. OsMed31_2 in Malik et al. 2016.	 Other	Os10g0564100	LOC_Os10g41450.1				GO:0016592 - mediator complex		
18699	_	OsMED19a	_	Mediator complex protein OsMED19a			12			Os12g0614000	LOC_Os12g41962.4, LOC_Os12g41962.3, LOC_Os12g41962.2, LOC_Os12g41962.1						
18700	_	OsMED19b, MED19b, OsMed19_1, Med19_1	_	Mediator complex protein OsMED19b, Mediator 19_1			3	OsMed19_1 in Malik et al. 2016. LOC_Os03g44010.		Os03g0641700	LOC_Os03g44010.2, LOC_Os03g44010.1						
18701	_	PetC	_	Rieske Fe-S precursor protein			7	LOC_Os07g37030. Q69S39.	 Tolerance and resistance - Stress tolerance	Os07g0556200	LOC_Os07g37030.1				GO:0010363 - regulation of plant-type hypersensitive response, GO:0010200 - response to chitin, GO:0006364 - rRNA processing, GO:0009697 - salicylic acid biosynthetic process, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0009409 - response to cold, GO:0009657 - plastid organization, GO:0006098 - pentose-phosphate shunt, GO:0009941 - chloroplast envelope, GO:0009512 - cytochrome b6f complex, GO:0005886 - plasma membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0008121 - ubiquinol-cytochrome-c reductase activity, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0009595 - detection of biotic stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0000165 - MAPKKK cascade, GO:0031348 - negative regulation of defense response, GO:0010196 - nonphotochemical quenching, GO:0009767 - photosynthetic electron transport chain, GO:0010207 - photosystem II assembly, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046028 - electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0006612 - protein targeting to membrane, GO:0046872 - metal ion binding, GO:0009496 - plastoquinol-plastocyanin reductase activity, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0043900 - regulation of multi-organism process	TO:0000031 - silicon sensitivity	
18702	_	Lhca6, OsLhca6	_	light-harvesting chlorophyll a/b-binding protein a6			9	LOC_Os09g26810.	 Biochemical character	Os09g0439500	LOC_Os09g26810.1				GO:0009744 - response to sucrose stimulus, GO:0009523 - photosystem II, GO:0016021 - integral to membrane, GO:0009522 - photosystem I, GO:0009507 - chloroplast, GO:0006364 - rRNA processing, GO:0009644 - response to high light intensity, GO:0010155 - regulation of proton transport, GO:0018298 - protein-chromophore linkage, GO:0009765 - photosynthesis, light harvesting, GO:0006098 - pentose-phosphate shunt, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019761 - glucosinolate biosynthetic process, GO:0070838 - divalent metal ion transport, GO:0030003 - cellular cation homeostasis, GO:0046872 - metal ion binding, GO:0016168 - chlorophyll binding		
18703	_	OsTPS1	_	terpene synthase 1			1	LOC_Os01g23530.	 Biochemical character	Os01g0337100	LOC_Os01g23530.1				GO:0000287 - magnesium ion binding		
18704	_	OsTPS2	_	terpene synthase 2			1	LOC_Os01g42610.	 Biochemical character	Os01g0611800	LOC_Os01g42610.1						
18705	_	OsTPS3, TPS3, OsLIS, LIS	_	terpene synthase 3, linalool synthase			2	LOC_Os02g02930. Q6ZH94.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0121700	LOC_Os02g02930.1				GO:0009507 - chloroplast, GO:0034007 - S-linalool synthase activity, GO:0000287 - magnesium ion binding, GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0010333 - terpene synthase activity, GO:0016114 - terpenoid biosynthetic process, GO:0016099 - monoterpenoid biosynthetic process	TO:0000148 - viral disease resistance, TO:0000386 - rice ragged stunt virus resistance	
18706	_	OsTPS5, TPS5	_	terpene synthase 5			2	LOC_Os02g36020.	 Biochemical character	Os02g0568700	LOC_Os02g36020.1				GO:0010333 - terpene synthase activity, GO:0000287 - magnesium ion binding, GO:0008152 - metabolic process		
18707	_	OsTPS10, TPS10	_	terpene synthase 10			3	LOC_Os03g22634.	 Biochemical character	Os03g0348200	LOC_Os03g22634.1				GO:0000287 - magnesium ion binding		
18708	_	OsTPS11	_	terpene synthase 11			3	LOC_Os03g24640.	 Biochemical character	Os03g0361100	LOC_Os03g24640.1				GO:0000287 - magnesium ion binding		
18709	_	OsTPS12	_	terpene synthase 12			3	LOC_Os03g24680.	 Biochemical character	Os03g0361600	LOC_Os03g24680.1				GO:0000287 - magnesium ion binding		
18710	_	OsTPS13	_	terpene synthase 13			3	LOC_Os03g24690.	 Biochemical character	Os03g0361700	LOC_Os03g24690.1				GO:0000287 - magnesium ion binding		
18711	_	OsTPS14	_	terpene synthase 14			3	LOC_Os03g31430.	 Biochemical character	Os03g0428200	LOC_Os03g31430.1				GO:0000287 - magnesium ion binding		
18713	_	OsTPS17	_	terpene synthase 17			4	LOC_Os04g26960.	 Biochemical character	Os04g0338400	LOC_Os04g26960.1				GO:0000287 - magnesium ion binding		
18714	_	OsTPS18	_	terpene synthase 18			4	LOC_Os04g27070.	 Biochemical character	Os04g0339500	LOC_Os04g27070.1				GO:0000287 - magnesium ion binding		
18715	_	OsTPS19, TPS19	_	terpene synthase 19			4	LOC_Os04g27190.  OsTPS19 has a highly homologous paralog, OsTPS20 (Chen et al. 2018). GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0340300	LOC_Os04g27190.3, LOC_Os04g27190.2, LOC_Os04g27190.1				GO:0009536 - plastid, GO:0010333 - terpene synthase activity, GO:0046250 - limonene biosynthetic process, GO:0050832 - defense response to fungus, GO:0000287 - magnesium ion binding, GO:0043693 - monoterpene biosynthetic process, GO:0010334 - sesquiterpene synthase activity, GO:0051762 - sesquiterpene biosynthetic process	TO:0000074 - blast disease	
18716	_	OsTPS20, TPS20	_	terpene synthase 20			4	LOC_Os04g27340.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0341500	LOC_Os04g27340.1				GO:0046250 - limonene biosynthetic process, GO:0042742 - defense response to bacterium, GO:0000287 - magnesium ion binding, GO:0006979 - response to oxidative stress, GO:0009628 - response to abiotic stimulus, GO:0010333 - terpene synthase activity, GO:0043693 - monoterpene biosynthetic process, GO:0010334 - sesquiterpene synthase activity, GO:0051762 - sesquiterpene biosynthetic process, GO:0009536 - plastid	TO:0000168 - abiotic stress trait, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance	
18717	_	OsTPS21	_	terpene synthase 21			4	LOC_Os04g27400.	 Biochemical character	Os04g0341800	LOC_Os04g27400.1				GO:0000287 - magnesium ion binding		
18718	_	OsTPS22	_	terpene synthase 22			4	LOC_Os04g27540.	 Biochemical character	Os04g0342800	LOC_Os04g27540.1						
18719	_	OsTPS23, TPS23	_	terpene synthase 23			4	LOC_Os04g27720.	 Biochemical character	Os04g0344400	LOC_Os04g27720.1				GO:0008152 - metabolic process, GO:0000287 - magnesium ion binding, GO:0010333 - terpene synthase activity		
18720	_	OsTPS24, TPS24	_	terpene synthase 24			4	LOC_Os04g27790.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0345400	LOC_Os04g27790.1				GO:0042742 - defense response to bacterium, GO:0000287 - magnesium ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0010333 - terpene synthase activity, GO:0009507 - chloroplast	TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity	
18721	_	OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10	_	terpene synthase 31, sesquiterpene synthase			8	LOC_Os08g07100. EU596452. TPS46 in Sun et al. 2017. TO:0006067: aphid resistance. OsTPS10 in Liang et al. 2017.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os08g0168000	LOC_Os08g07100.1				GO:0000287 - magnesium ion binding, GO:0002213 - defense response to insect	TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance	
18722	RLCK1	OsRLCK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 1	Receptor-like Cytoplasmic Kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 1		1	LOC_Os01g01110			LOC_Os01g01110						
18723	RLCK2	OsRLCK2, rrsRLK	RECEPTOR-LIKE CYTOPLASMIC KINASE 2	Receptor-like Cytoplasmic Kinase 2, required for ROS-scavenging receptor-like kinase	RECEPTOR-LIKE CYTOPLASMIC KINASE 2		1	LOC_Os01g02290. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0113200	LOC_Os01g02290.2, LOC_Os01g02290.1				GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0007031 - peroxisome organization, GO:0005524 - ATP binding	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
18724	RLCK3	OsRLCK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 3	Receptor-like Cytoplasmic Kinase 3	RECEPTOR-LIKE CYTOPLASMIC KINASE 3		1	LOC_Os01g02300	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0113300	LOC_Os01g02300.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18725	RLCK4	OsRLCK4	RECEPTOR-LIKE CYTOPLASMIC KINASE 4	Receptor-like Cytoplasmic Kinase 4	RECEPTOR-LIKE CYTOPLASMIC KINASE 4		1	LOC_Os01g02320		Os01g0113400	LOC_Os01g02320.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18726	RLCK5	OsRLCK5	RECEPTOR-LIKE CYTOPLASMIC KINASE 5	Receptor-like Cytoplasmic Kinase 5	RECEPTOR-LIKE CYTOPLASMIC KINASE 5		1	LOC_Os01g02390	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os01g0114100	LOC_Os01g02390.2, LOC_Os01g02390.1				GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18727	RLCK6	OsRLCK6	RECEPTOR-LIKE CYTOPLASMIC KINASE 6	Receptor-like Cytoplasmic Kinase 6	RECEPTOR-LIKE CYTOPLASMIC KINASE 6		1	LOC_Os01g02400	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os01g0114300	LOC_Os01g02400.3, LOC_Os01g02400.2, LOC_Os01g02400.1				GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18728	RLCK7	OsRLCK7	RECEPTOR-LIKE CYTOPLASMIC KINASE 7	Receptor-like Cytoplasmic Kinase 7	RECEPTOR-LIKE CYTOPLASMIC KINASE 7		1	LOC_Os01g02410		Os01g0114400/Os01g0114401/Os01g0114450					GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18729	RLCK8	OsRLCK8	RECEPTOR-LIKE CYTOPLASMIC KINASE 8	Receptor-like Cytoplasmic Kinase 8	RECEPTOR-LIKE CYTOPLASMIC KINASE 8		1	LOC_Os01g02430		Os01g0114600	LOC_Os01g02430.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18730	RLCK9	OsRLCK9	RECEPTOR-LIKE CYTOPLASMIC KINASE 9	Receptor-like Cytoplasmic Kinase 9	RECEPTOR-LIKE CYTOPLASMIC KINASE 9		1	LOC_Os01g02460		Os01g0114900	LOC_Os01g02460.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18731	RLCK10	OsRLCK10	RECEPTOR-LIKE CYTOPLASMIC KINASE 10	Receptor-like Cytoplasmic Kinase 10	RECEPTOR-LIKE CYTOPLASMIC KINASE 10		1	LOC_Os01g02550	 Tolerance and resistance - Disease resistance	Os01g0115500/Os01g0115566					GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18732	RLCK11	OsRLCK11	RECEPTOR-LIKE CYTOPLASMIC KINASE 11	Receptor-like Cytoplasmic Kinase 11	RECEPTOR-LIKE CYTOPLASMIC KINASE 11		1	LOC_Os01g02560. XB21 interacting protein (XB21IP).	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os01g0115600	LOC_Os01g02560.1				GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18733	RLCK13	OsRLCK13	RECEPTOR-LIKE CYTOPLASMIC KINASE 13	Receptor-like Cytoplasmic Kinase 13	RECEPTOR-LIKE CYTOPLASMIC KINASE 13		1	LOC_Os01g02680		Os01g0116200	LOC_Os01g02680.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18734	RLCK14	OsRLCK14	RECEPTOR-LIKE CYTOPLASMIC KINASE 14	Receptor-like Cytoplasmic Kinase 14	RECEPTOR-LIKE CYTOPLASMIC KINASE 14		1	LOC_Os01g02690		Os01g0116300	LOC_Os01g02690.1						
18735	RLCK15	OsRLCK15	RECEPTOR-LIKE CYTOPLASMIC KINASE 15	Receptor-like Cytoplasmic Kinase 15	RECEPTOR-LIKE CYTOPLASMIC KINASE 15		1	LOC_Os01g02760	 Tolerance and resistance - Disease resistance	Os01g0117000	LOC_Os01g02760.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
18736	RLCK16	OsRLCK16	RECEPTOR-LIKE CYTOPLASMIC KINASE 16	Receptor-like Cytoplasmic Kinase 16	RECEPTOR-LIKE CYTOPLASMIC KINASE 16		1	LOC_Os01g02780	 Tolerance and resistance - Disease resistance	Os01g0117200	LOC_Os01g02780.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18737	RLCK17	OsRLCK17	RECEPTOR-LIKE CYTOPLASMIC KINASE 17	Receptor-like Cytoplasmic Kinase 17	RECEPTOR-LIKE CYTOPLASMIC KINASE 17		1	LOC_Os01g02790	 Tolerance and resistance - Disease resistance	Os01g0117266/Os01g0117300					GO:0042742 - defense response to bacterium, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance	
18738	RLCK18	OsRLCK18	RECEPTOR-LIKE CYTOPLASMIC KINASE 18	Receptor-like Cytoplasmic Kinase 18	RECEPTOR-LIKE CYTOPLASMIC KINASE 18		1	LOC_Os01g02800		Os01g0117400	LOC_Os01g02800.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18739	RLCK19	OsRLCK19	RECEPTOR-LIKE CYTOPLASMIC KINASE 19	Receptor-like Cytoplasmic Kinase 19	RECEPTOR-LIKE CYTOPLASMIC KINASE 19		1	LOC_Os01g03690	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0127700	LOC_Os01g03690.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	
18740	RLCK20	OsRLCK20	RECEPTOR-LIKE CYTOPLASMIC KINASE 20	Receptor-like Cytoplasmic Kinase 20	RECEPTOR-LIKE CYTOPLASMIC KINASE 20		1	LOC_Os01g04480		Os01g0137200/Os01g0137250					GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18741	RLCK21	OsRLCK21	RECEPTOR-LIKE CYTOPLASMIC KINASE 21	Receptor-like Cytoplasmic Kinase 21	RECEPTOR-LIKE CYTOPLASMIC KINASE 21		1	LOC_Os01g04490		Os01g0137282/Os01g0137400					GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18742	RLCK22	OsRLCK22	RECEPTOR-LIKE CYTOPLASMIC KINASE 22	Receptor-like Cytoplasmic Kinase 22	RECEPTOR-LIKE CYTOPLASMIC KINASE 22		1	LOC_Os01g04520		Os01g0137500	LOC_Os01g04520.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18743	RLCK23	OsRLCK23	RECEPTOR-LIKE CYTOPLASMIC KINASE 23	Receptor-like Cytoplasmic Kinase 23	RECEPTOR-LIKE CYTOPLASMIC KINASE 23		1	LOC_Os01g04550	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0137950	LOC_Os01g04550.1				GO:0050832 - defense response to fungus, GO:0009409 - response to cold	TO:0000074 - blast disease, TO:0000303 - cold tolerance	
18744	RLCK24	OsRLCK24	RECEPTOR-LIKE CYTOPLASMIC KINASE 24	Receptor-like Cytoplasmic Kinase 24	RECEPTOR-LIKE CYTOPLASMIC KINASE 24		1	LOC_Os01g05940.  a rice ortholog of Arabidopsis EFR.		Os01g0152600/Os01g0152687					GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
18745	RLCK26	OsRLCK26	RECEPTOR-LIKE CYTOPLASMIC KINASE 26	Receptor-like Cytoplasmic Kinase 26	RECEPTOR-LIKE CYTOPLASMIC KINASE 26		1	LOC_Os01g10700			LOC_Os01g10700						
18746	RLCK27	OsRLCK27	RECEPTOR-LIKE CYTOPLASMIC KINASE 27	Receptor-like Cytoplasmic Kinase 27	RECEPTOR-LIKE CYTOPLASMIC KINASE 27		1	LOC_Os01g14510	 Tolerance and resistance - Stress tolerance	Os01g0247500	LOC_Os01g14510.1				GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18747	RLCK28	OsRLCK28	RECEPTOR-LIKE CYTOPLASMIC KINASE 28	Receptor-like Cytoplasmic Kinase 28	RECEPTOR-LIKE CYTOPLASMIC KINASE 28		1	LOC_Os01g15470	 Reproductive organ - panicle,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0259200	LOC_Os01g15470.3, LOC_Os01g15470.2, LOC_Os01g15470.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18748	RLCK29	OsRLCK29	RECEPTOR-LIKE CYTOPLASMIC KINASE 29	Receptor-like Cytoplasmic Kinase 29	RECEPTOR-LIKE CYTOPLASMIC KINASE 29		1	LOC_Os01g16230		Os01g0267800	LOC_Os01g16230.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18749	RLCK30	OsRLCK30	RECEPTOR-LIKE CYTOPLASMIC KINASE 30	Receptor-like Cytoplasmic Kinase 30	RECEPTOR-LIKE CYTOPLASMIC KINASE 30		1	LOC_Os01g19160		Os01g0296000	LOC_Os01g19160.2, LOC_Os01g19160.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18750	RLCK31	OsRLCK31	RECEPTOR-LIKE CYTOPLASMIC KINASE 31	Receptor-like Cytoplasmic Kinase 31	RECEPTOR-LIKE CYTOPLASMIC KINASE 31		1	LOC_Os01g20880		Os01g0310500	LOC_Os01g20890.1, LOC_Os01g20880.1						
18751	RLCK34	OsRLCK34	RECEPTOR-LIKE CYTOPLASMIC KINASE 34	Receptor-like Cytoplasmic Kinase 34	RECEPTOR-LIKE CYTOPLASMIC KINASE 34		1	LOC_Os01g23970		Os01g0342200	LOC_Os01g23970.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18752	RLCK35	OsRLCK35	RECEPTOR-LIKE CYTOPLASMIC KINASE 35	Receptor-like Cytoplasmic Kinase 35	RECEPTOR-LIKE CYTOPLASMIC KINASE 35		1	LOC_Os01g26210		Os01g0364400	LOC_Os01g26240.1, LOC_Os01g26210.1				GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding		
18753	RLCK36	OsRLCK36	RECEPTOR-LIKE CYTOPLASMIC KINASE 36	Receptor-like Cytoplasmic Kinase 36	RECEPTOR-LIKE CYTOPLASMIC KINASE 36		1	LOC_Os01g36500		Os01g0545500	LOC_Os01g36500.1						
18754	RLCK37	OsRLCK37	RECEPTOR-LIKE CYTOPLASMIC KINASE 37	Receptor-like Cytoplasmic Kinase 37	RECEPTOR-LIKE CYTOPLASMIC KINASE 37		1	LOC_Os01g38840		Os01g0568800	LOC_Os01g38850.1, LOC_Os01g38840.1						
18755	RLCK38	OsRLCK38	RECEPTOR-LIKE CYTOPLASMIC KINASE 38	Receptor-like Cytoplasmic Kinase 38	RECEPTOR-LIKE CYTOPLASMIC KINASE 38		1	LOC_Os01g39820		Os01g0580150	LOC_Os01g39820.1						
18756	RLCK39	OsRLCK39	RECEPTOR-LIKE CYTOPLASMIC KINASE 39	Receptor-like Cytoplasmic Kinase 39	RECEPTOR-LIKE CYTOPLASMIC KINASE 39		1	LOC_Os01g39970	 Reproductive organ - panicle,  Seed	Os01g0581400	LOC_Os01g39970.1				GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0010229 - inflorescence development	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18757	RLCK40	OsRLCK40	RECEPTOR-LIKE CYTOPLASMIC KINASE 40	Receptor-like Cytoplasmic Kinase 40	RECEPTOR-LIKE CYTOPLASMIC KINASE 40		1	LOC_Os01g40590	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os01g0588500	LOC_Os01g40590.1				GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18758	RLCK41	OsRLCK41	RECEPTOR-LIKE CYTOPLASMIC KINASE 41	Receptor-like Cytoplasmic Kinase 41	RECEPTOR-LIKE CYTOPLASMIC KINASE 41		1	LOC_Os01g41730	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0601200	LOC_Os01g41730.1				GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
18759	RLCK42	OsRLCK42	RECEPTOR-LIKE CYTOPLASMIC KINASE 42	Receptor-like Cytoplasmic Kinase 42	RECEPTOR-LIKE CYTOPLASMIC KINASE 42		1	LOC_Os01g41870	 Tolerance and resistance - Stress tolerance	Os01g0602800	LOC_Os01g41870.2, LOC_Os01g41870.1				GO:0009651 - response to salt stress, GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18760	RLCK43	OsRLCK43	RECEPTOR-LIKE CYTOPLASMIC KINASE 43	Receptor-like Cytoplasmic Kinase 43	RECEPTOR-LIKE CYTOPLASMIC KINASE 43		1	LOC_Os01g48020		Os01g0670300	LOC_Os01g48020.1						
18761	RLCK44	OsRLCK44	RECEPTOR-LIKE CYTOPLASMIC KINASE 44	Receptor-like Cytoplasmic Kinase 44	RECEPTOR-LIKE CYTOPLASMIC KINASE 44		1	LOC_Os01g57540		Os01g0784500	LOC_Os01g57540.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18762	RLCK45	OsRLCK45	RECEPTOR-LIKE CYTOPLASMIC KINASE 45	Receptor-like Cytoplasmic Kinase 45	RECEPTOR-LIKE CYTOPLASMIC KINASE 45		1	LOC_Os01g57940	 Reproductive organ - panicle,  Seed	Os01g0789200	LOC_Os01g57940.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18763	RLCK46	OsRLCK46	RECEPTOR-LIKE CYTOPLASMIC KINASE 46	Receptor-like Cytoplasmic Kinase 46	RECEPTOR-LIKE CYTOPLASMIC KINASE 46		1	LOC_Os01g59560	 Reproductive organ - panicle,  Seed	Os01g0810600	LOC_Os01g59560.1				GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18764	RLCK47	OsRLCK47	RECEPTOR-LIKE CYTOPLASMIC KINASE 47	Receptor-like Cytoplasmic Kinase 47	RECEPTOR-LIKE CYTOPLASMIC KINASE 47		1	LOC_Os01g60700	 Tolerance and resistance - Disease resistance	Os01g0822200	LOC_Os01g60700.2, LOC_Os01g60700.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0050832 - defense response to fungus, GO:0006914 - autophagy	TO:0000074 - blast disease	
18765	RLCK48	OsRLCK48	RECEPTOR-LIKE CYTOPLASMIC KINASE 48	Receptor-like Cytoplasmic Kinase 48	RECEPTOR-LIKE CYTOPLASMIC KINASE 48		1	LOC_Os01g63280	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0852100	LOC_Os01g63280.3, LOC_Os01g63280.2, LOC_Os01g63280.1				GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
18766	RLCK49	OsRLCK49	RECEPTOR-LIKE CYTOPLASMIC KINASE 49	Receptor-like Cytoplasmic Kinase 49	RECEPTOR-LIKE CYTOPLASMIC KINASE 49		1	LOC_Os01g65940	 Tolerance and resistance - Disease resistance		LOC_Os01g65940				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18767	RLCK50	OsRLCK50	RECEPTOR-LIKE CYTOPLASMIC KINASE 50	Receptor-like Cytoplasmic Kinase 50	RECEPTOR-LIKE CYTOPLASMIC KINASE 50		1	LOC_Os01g66040		Os01g0883000	LOC_Os01g66040.1, LOC_Os01g66020.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18768	RLCK51	OsRLCK51	RECEPTOR-LIKE CYTOPLASMIC KINASE 51	Receptor-like Cytoplasmic Kinase 51	RECEPTOR-LIKE CYTOPLASMIC KINASE 51		1	LOC_Os01g66630		Os01g0890100	LOC_Os01g66630.1						
18769	RLCK52	OsRLCK52	RECEPTOR-LIKE CYTOPLASMIC KINASE 52	Receptor-like Cytoplasmic Kinase 52	RECEPTOR-LIKE CYTOPLASMIC KINASE 52		1	LOC_Os01g67340	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os01g0899000	LOC_Os01g67340.3, LOC_Os01g67340.2, LOC_Os01g67340.1				GO:0004713 - protein tyrosine kinase activity, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium	TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18770	RLCK53	OsRLCK53	RECEPTOR-LIKE CYTOPLASMIC KINASE 53	Receptor-like Cytoplasmic Kinase 53	RECEPTOR-LIKE CYTOPLASMIC KINASE 53		1	LOC_Os01g70410	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0929200	LOC_Os01g70410.3, LOC_Os01g70410.2, LOC_Os01g70410.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
18771	RLCK54	OsRLCK54	RECEPTOR-LIKE CYTOPLASMIC KINASE 54	Receptor-like Cytoplasmic Kinase 54	RECEPTOR-LIKE CYTOPLASMIC KINASE 54		1	LOC_Os01g70970		Os01g0935800	LOC_Os01g70970.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18772	RLCK56	OsRLCK56	RECEPTOR-LIKE CYTOPLASMIC KINASE 56	Receptor-like Cytoplasmic Kinase 56	RECEPTOR-LIKE CYTOPLASMIC KINASE 56		1	LOC_Os01g73370		Os01g0964400	LOC_Os01g73390.1, LOC_Os01g73370.1				GO:0005856 - cytoskeleton, GO:0005524 - ATP binding, GO:0005737 - cytoplasm		
18773	RLCK57	OsRLCK57	RECEPTOR-LIKE CYTOPLASMIC KINASE 57	Receptor-like Cytoplasmic Kinase 57	RECEPTOR-LIKE CYTOPLASMIC KINASE 57		1	LOC_Os01g74200. a rice homolog of AtBIK1.GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:1903409 reactive oxygen species biosynthetic process.	 Vegetative organ - Leaf,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0973500	LOC_Os01g74200.1				GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0002237 - response to molecule of bacterial origin, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0032494 - response to peptidoglycan, GO:0010200 - response to chitin, GO:0009651 - response to salt stress, GO:0009742 - brassinosteroid mediated signaling, GO:0010229 - inflorescence development, GO:0009741 - response to brassinosteroid stimulus	TO:0000346 - tiller number, TO:0000050 - inflorescence branching, TO:0000621 - inflorescence development trait, TO:0002677 - brassinosteroid sensitivity, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000206 - leaf angle	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18774	RLCK58	OsRLCK58	RECEPTOR-LIKE CYTOPLASMIC KINASE 58	Receptor-like Cytoplasmic Kinase 58	RECEPTOR-LIKE CYTOPLASMIC KINASE 58		2	LOC_Os02g01730	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os02g0106900	LOC_Os02g01730.1				GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0004672 - protein kinase activity, GO:0009611 - response to wounding	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18775	RLCK59	OsRLCK59	RECEPTOR-LIKE CYTOPLASMIC KINASE 59	Receptor-like Cytoplasmic Kinase 59	RECEPTOR-LIKE CYTOPLASMIC KINASE 59		2	LOC_Os02g01800		Os02g0107700	LOC_Os02g01800.1						
18776	RLCK60	OsRLCK60	RECEPTOR-LIKE CYTOPLASMIC KINASE 60	Receptor-like Cytoplasmic Kinase 60	RECEPTOR-LIKE CYTOPLASMIC KINASE 60		2	LOC_Os02g02600	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0118200	LOC_Os02g02600.1				GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18777	RLCK61	OsRLCK61	RECEPTOR-LIKE CYTOPLASMIC KINASE 61	Receptor-like Cytoplasmic Kinase 61	RECEPTOR-LIKE CYTOPLASMIC KINASE 61		2	LOC_Os02g05820	 Tolerance and resistance - Disease resistance	Os02g0152300	LOC_Os02g05820.1				GO:0004674 - protein serine/threonine kinase activity, GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
18778	RLCK62	OsRLCK62	RECEPTOR-LIKE CYTOPLASMIC KINASE 62	Receptor-like Cytoplasmic Kinase 62	RECEPTOR-LIKE CYTOPLASMIC KINASE 62		2	LOC_Os02g06160		Os02g0156000	LOC_Os02g06160.1						
18779	RLCK63	OsRLCK63	RECEPTOR-LIKE CYTOPLASMIC KINASE 63	Receptor-like Cytoplasmic Kinase 63	RECEPTOR-LIKE CYTOPLASMIC KINASE 63		2	LOC_Os02g06930	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0165100	LOC_Os02g06930.4, LOC_Os02g06930.3, LOC_Os02g06930.2, LOC_Os02g06930.1				GO:0048316 - seed development, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18780	RLCK64	OsRLCK64	RECEPTOR-LIKE CYTOPLASMIC KINASE 64	Receptor-like Cytoplasmic Kinase 64	RECEPTOR-LIKE CYTOPLASMIC KINASE 64		2	LOC_Os02g09359		Os02g0186500	LOC_Os02g09359.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18781	RLCK65	OsRLCK65	RECEPTOR-LIKE CYTOPLASMIC KINASE 65	Receptor-like Cytoplasmic Kinase 65	RECEPTOR-LIKE CYTOPLASMIC KINASE 65		2	LOC_Os02g12030		Os02g0211800	LOC_Os02g12030.1						
18782	RLCK66	OsRLCK66	RECEPTOR-LIKE CYTOPLASMIC KINASE 66	Receptor-like Cytoplasmic Kinase 66	RECEPTOR-LIKE CYTOPLASMIC KINASE 66		2	LOC_Os02g12130	 Tolerance and resistance - Disease resistance	Os02g0212900	LOC_Os02g12130.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18783	RLCK67	OsRLCK67	RECEPTOR-LIKE CYTOPLASMIC KINASE 67	Receptor-like Cytoplasmic Kinase 67	RECEPTOR-LIKE CYTOPLASMIC KINASE 67		2	LOC_Os02g12340		Os02g0214633	LOC_Os02g12340.1						
18784	RLCK68	OsRLCK68	RECEPTOR-LIKE CYTOPLASMIC KINASE 68	Receptor-like Cytoplasmic Kinase 68	RECEPTOR-LIKE CYTOPLASMIC KINASE 68		2	LOC_Os02g12660		Os02g0218400	LOC_Os02g12660.1				GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0004674 - protein serine/threonine kinase activity		
18785	RLCK70	OsRLCK70	RECEPTOR-LIKE CYTOPLASMIC KINASE 70	Receptor-like Cytoplasmic Kinase 70	RECEPTOR-LIKE CYTOPLASMIC KINASE 70		2	LOC_Os02g13460		Os02g0227900/Os02g0228000							
18786	RLCK71	OsRLCK71	RECEPTOR-LIKE CYTOPLASMIC KINASE 71	Receptor-like Cytoplasmic Kinase 71	RECEPTOR-LIKE CYTOPLASMIC KINASE 71		2	LOC_Os02g16790		Os02g0267766	LOC_Os02g16790.1						
18787	RLCK72	OsRLCK72	RECEPTOR-LIKE CYTOPLASMIC KINASE 72	Receptor-like Cytoplasmic Kinase 72	RECEPTOR-LIKE CYTOPLASMIC KINASE 72		2	LOC_Os02g30900	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0513000	LOC_Os02g30900.1				GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
18788	RLCK73	OsRLCK73	RECEPTOR-LIKE CYTOPLASMIC KINASE 73	Receptor-like Cytoplasmic Kinase 73	RECEPTOR-LIKE CYTOPLASMIC KINASE 73		2	LOC_Os02g34430		Os02g0549200	LOC_Os02g34430.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18789	RLCK74	OsRLCK74	RECEPTOR-LIKE CYTOPLASMIC KINASE 74	Receptor-like Cytoplasmic Kinase 74	RECEPTOR-LIKE CYTOPLASMIC KINASE 74		2	LOC_Os02g35760	 Tolerance and resistance - Disease resistance	Os02g0565500	LOC_Os02g35760.2, LOC_Os02g35760.1				GO:0050832 - defense response to fungus, GO:0004713 - protein tyrosine kinase activity, GO:0005524 - ATP binding	TO:0000074 - blast disease	
18790	RLCK78	OsRLCK78	RECEPTOR-LIKE CYTOPLASMIC KINASE 78	Receptor-like Cytoplasmic Kinase 78	RECEPTOR-LIKE CYTOPLASMIC KINASE 78		2	LOC_Os02g42620	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0639100	LOC_Os02g42620.1				GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18791	RLCK79	OsRLCK79	RECEPTOR-LIKE CYTOPLASMIC KINASE 79	Receptor-like Cytoplasmic Kinase 79	RECEPTOR-LIKE CYTOPLASMIC KINASE 79		2	LOC_Os02g43290	 Reproductive organ - panicle,  Seed	Os02g0648100	LOC_Os02g43290.1				GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18792	RLCK80	OsRLCK80	RECEPTOR-LIKE CYTOPLASMIC KINASE 80	Receptor-like Cytoplasmic Kinase 80	RECEPTOR-LIKE CYTOPLASMIC KINASE 80		2	LOC_Os02g43430	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0650500	LOC_Os02g43430.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18793	RLCK82	OsRLCK82	RECEPTOR-LIKE CYTOPLASMIC KINASE 82	Receptor-like Cytoplasmic Kinase 82	RECEPTOR-LIKE CYTOPLASMIC KINASE 82		2	LOC_Os02g44920	 Seed	Os02g0670100	LOC_Os02g44920.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0005524 - ATP binding	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
18794	RLCK83	OsRLCK83	RECEPTOR-LIKE CYTOPLASMIC KINASE 83	Receptor-like Cytoplasmic Kinase 83	RECEPTOR-LIKE CYTOPLASMIC KINASE 83		2	LOC_Os02g45750	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0681632/Os02g0681700					GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
18795	RLCK84	OsRLCK84	RECEPTOR-LIKE CYTOPLASMIC KINASE 84	Receptor-like Cytoplasmic Kinase 84	RECEPTOR-LIKE CYTOPLASMIC KINASE 84		2	LOC_Os02g53030		Os02g0769700	LOC_Os02g53030.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18796	RLCK85	OsRLCK85, OsER2, ER2	RECEPTOR-LIKE CYTOPLASMIC KINASE 85	Receptor-like Cytoplasmic Kinase 85, ERECTA 2	RECEPTOR-LIKE CYTOPLASMIC KINASE 85	oser2-wu	2	LOC_Os02g53720. GO:2000241: regulation of reproductive process. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os02g0777400	LOC_Os02g53720.2, LOC_Os02g53720.1				GO:0042127 - regulation of cell proliferation, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0001558 - regulation of cell growth, GO:0022414 - reproductive process	TO:0000207 - plant height, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0006032 - panicle size, TO:0000180 - spikelet fertility	PO:0007041 - inflorescence emergence stage , PO:0000084 - plant sperm cell , PO:0009047 - stem , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009051 - spikelet , PO:0009029 - stamen , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18797	RLCK86	OsRLCK86	RECEPTOR-LIKE CYTOPLASMIC KINASE 86	Receptor-like Cytoplasmic Kinase 86	RECEPTOR-LIKE CYTOPLASMIC KINASE 86		2	LOC_Os02g53750	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0777800	LOC_Os02g53750.2, LOC_Os02g53750.1				GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18798	RLCK87	OsRLCK87	RECEPTOR-LIKE CYTOPLASMIC KINASE 87	Receptor-like Cytoplasmic Kinase 87	RECEPTOR-LIKE CYTOPLASMIC KINASE 87		2	LOC_Os02g54590	 Reproductive organ - panicle	Os02g0787200	LOC_Os02g54590.1				GO:0006950 - response to stress, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18799	RLCK88	OsRLCK88	RECEPTOR-LIKE CYTOPLASMIC KINASE 88	Receptor-like Cytoplasmic Kinase 88	RECEPTOR-LIKE CYTOPLASMIC KINASE 88		2	LOC_Os02g57420	 Tolerance and resistance - Disease resistance	Os02g0819600	LOC_Os02g57420.1				GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0004672 - protein kinase activity	TO:0000175 - bacterial blight disease resistance	
18800	RLCK89	OsRLCK89	RECEPTOR-LIKE CYTOPLASMIC KINASE 89	Receptor-like Cytoplasmic Kinase 89	RECEPTOR-LIKE CYTOPLASMIC KINASE 89		2	LOC_Os02g57440	 Tolerance and resistance - Disease resistance	Os02g0819900	LOC_Os02g57440.1				GO:0004672 - protein kinase activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18801	RLCK90	OsRLCK90	RECEPTOR-LIKE CYTOPLASMIC KINASE 90	Receptor-like Cytoplasmic Kinase 90	RECEPTOR-LIKE CYTOPLASMIC KINASE 90		2	LOC_Os02g57560	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os02g0821400	LOC_Os02g57560.1				GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18802	RLCK92	OsRLCK92	RECEPTOR-LIKE CYTOPLASMIC KINASE 92	Receptor-like Cytoplasmic Kinase 92	RECEPTOR-LIKE CYTOPLASMIC KINASE 92		2	LOC_Os02g58610		Os02g0833000	LOC_Os02g58610.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18803	RLCK94	OsRLCK94	RECEPTOR-LIKE CYTOPLASMIC KINASE 94	Receptor-like Cytoplasmic Kinase 94	RECEPTOR-LIKE CYTOPLASMIC KINASE 94		3	LOC_Os03g01410			LOC_Os03g01410				GO:0005524 - ATP binding		
18804	RLCK95	OsRLCK95	RECEPTOR-LIKE CYTOPLASMIC KINASE 95	Receptor-like Cytoplasmic Kinase 95	RECEPTOR-LIKE CYTOPLASMIC KINASE 95		3	LOC_Os03g02190	 Tolerance and resistance - Stress tolerance	Os03g0113000	LOC_Os03g02190.1				GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
18805	RLCK96	OsRLCK96	RECEPTOR-LIKE CYTOPLASMIC KINASE 96	Receptor-like Cytoplasmic Kinase 96	RECEPTOR-LIKE CYTOPLASMIC KINASE 96		3	LOC_Os03g03880	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance	Os03g0130900	LOC_Os03g03880.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18806	RLCK97	OsRLCK97	RECEPTOR-LIKE CYTOPLASMIC KINASE 97	Receptor-like Cytoplasmic Kinase 97	RECEPTOR-LIKE CYTOPLASMIC KINASE 97		3	LOC_Os03g03890	 Tolerance and resistance	Os03g0131000	LOC_Os03g03890.1				GO:0009611 - response to wounding, GO:0004672 - protein kinase activity		
18807	RLCK98	OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1	RECEPTOR-LIKE CYTOPLASMIC KINASE 98	Receptor-like Cytoplasmic Kinase 98, BR-signaling kinase 1, brassinosteroid-signaling kinase 1, brassinosteroid-SIGNALING KINASE 1-1	RECEPTOR-LIKE CYTOPLASMIC KINASE 98		3	LOC_Os03g04050. a rice ortholog of AtBSK.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0132800	LOC_Os03g04050.1				GO:0004672 - protein kinase activity, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18808	RLCK99	OsRLCK99	RECEPTOR-LIKE CYTOPLASMIC KINASE 99	Receptor-like Cytoplasmic Kinase 99	RECEPTOR-LIKE CYTOPLASMIC KINASE 99		3	LOC_Os03g05140		Os03g0145102	LOC_Os03g05140.1						
18809	RLCK100	OsRLCK100	RECEPTOR-LIKE CYTOPLASMIC KINASE 100	Receptor-like Cytoplasmic Kinase 100	RECEPTOR-LIKE CYTOPLASMIC KINASE 100		3	LOC_Os03g05470	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os03g0148700	LOC_Os03g05470.1				GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18810	RLCK101	OsRLCK101	RECEPTOR-LIKE CYTOPLASMIC KINASE 101	Receptor-like Cytoplasmic Kinase 101	RECEPTOR-LIKE CYTOPLASMIC KINASE 101		3	LOC_Os03g06330	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0159100	LOC_Os03g06330.1				GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
18811	RLCK102	OsRLCK102	RECEPTOR-LIKE CYTOPLASMIC KINASE 102	Receptor-like Cytoplasmic Kinase 102	RECEPTOR-LIKE CYTOPLASMIC KINASE 102		3	LOC_Os03g07430	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os03g0170400	LOC_Os03g07430.5, LOC_Os03g07430.4, LOC_Os03g07430.3, LOC_Os03g07430.2, LOC_Os03g07430.1				GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18812	RLCK104	OsRLCK104	RECEPTOR-LIKE CYTOPLASMIC KINASE 104	Receptor-like Cytoplasmic Kinase 104	RECEPTOR-LIKE CYTOPLASMIC KINASE 104		3	LOC_Os03g12520		Os03g0226300	LOC_Os03g12520.1				GO:0004713 - protein tyrosine kinase activity, GO:0005524 - ATP binding		
18813	RLCK105	OsRLCK105	RECEPTOR-LIKE CYTOPLASMIC KINASE 105	Receptor-like Cytoplasmic Kinase 105	RECEPTOR-LIKE CYTOPLASMIC KINASE 105		3	LOC_Os03g13820	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0241400/Os03g0241600					GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
18814	RLCK106	OsRLCK106	RECEPTOR-LIKE CYTOPLASMIC KINASE 106	Receptor-like Cytoplasmic Kinase 106	RECEPTOR-LIKE CYTOPLASMIC KINASE 106		3	LOC_Os03g15770	 Tolerance and resistance - Stress tolerance	Os03g0264300	LOC_Os03g15770.3, LOC_Os03g15770.2, LOC_Os03g15770.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009581 - detection of external stimulus, GO:0009595 - detection of biotic stimulus, GO:0009651 - response to salt stress, GO:0010200 - response to chitin, GO:0002237 - response to molecule of bacterial origin, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18815	RLCK107	OsRLCK107	RECEPTOR-LIKE CYTOPLASMIC KINASE 107	Receptor-like Cytoplasmic Kinase 107	RECEPTOR-LIKE CYTOPLASMIC KINASE 107		3	LOC_Os03g16740. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:1903409 reactive oxygen species biosynthetic process.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os03g0274800	LOC_Os03g16740.2, LOC_Os03g16740.1				GO:0002237 - response to molecule of bacterial origin, GO:0009741 - response to brassinosteroid stimulus, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0032494 - response to peptidoglycan, GO:0010200 - response to chitin, GO:0009742 - brassinosteroid mediated signaling, GO:0050832 - defense response to fungus	TO:0000206 - leaf angle, TO:0000445 - seed number, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000346 - tiller number	
18816	RLCK108	OsRLCK108	RECEPTOR-LIKE CYTOPLASMIC KINASE 108	Receptor-like Cytoplasmic Kinase 108	RECEPTOR-LIKE CYTOPLASMIC KINASE 108		3	LOC_Os03g17550	 Reproductive organ - panicle,  Seed	Os03g0283900	LOC_Os03g17550.1				GO:0010229 - inflorescence development, GO:0004672 - protein kinase activity, GO:0048316 - seed development, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18817	BBS1	OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109	BILATERAL BLADE SENESCENCE 1	Receptor-like Cytoplasmic Kinase 109, bilateral blade senescence 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 109	bbs1	3	LOC_Os03g24930. GO:0090391: granum assembly.	 Vegetative organ - Leaf,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0364400	LOC_Os03g24930.2, LOC_Os03g24930.1				GO:0010229 - inflorescence development, GO:0045492 - xylan biosynthetic process, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0010413 - glucuronoxylan metabolic process, GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization	TO:0000249 - leaf senescence, TO:0000180 - spikelet fertility, TO:0001007 - coleoptile length, TO:0000227 - root length, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000293 - chlorophyll-a content, TO:0000592 - 1000-dehulled grain weight, TO:0000397 - grain size, TO:0000495 - chlorophyll content, TO:0000298 - chlorophyll ratio, TO:0000295 - chlorophyll-b content, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
18818	RLCK110	OsRLCK110	RECEPTOR-LIKE CYTOPLASMIC KINASE 110	Receptor-like Cytoplasmic Kinase 110	RECEPTOR-LIKE CYTOPLASMIC KINASE 110		3	LOC_Os03g29410	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0407900	LOC_Os03g29410.1				GO:0009611 - response to wounding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18819	RLCK113	OsRLCK113	RECEPTOR-LIKE CYTOPLASMIC KINASE 113	Receptor-like Cytoplasmic Kinase 113	RECEPTOR-LIKE CYTOPLASMIC KINASE 113		3	LOC_Os03g31260		Os03g0426300	LOC_Os03g31260.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18820	RLCK114	OsRLCK114	RECEPTOR-LIKE CYTOPLASMIC KINASE 114	Receptor-like Cytoplasmic Kinase 114	RECEPTOR-LIKE CYTOPLASMIC KINASE 114		3	LOC_Os03g44050		Os03g0642600	LOC_Os03g44050.1						
18821	RLCK115	OsRLCK115	RECEPTOR-LIKE CYTOPLASMIC KINASE 115	Receptor-like Cytoplasmic Kinase 115	RECEPTOR-LIKE CYTOPLASMIC KINASE 115		3	LOC_Os03g51040		Os03g0719850	LOC_Os03g51040.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18822	RLCK116	OsRLCK116	RECEPTOR-LIKE CYTOPLASMIC KINASE 116	Receptor-like Cytoplasmic Kinase 116	RECEPTOR-LIKE CYTOPLASMIC KINASE 116		3	LOC_Os03g51060		Os03g0720166	LOC_Os03g51060.1						
18823	RLCK117	OsRLCK117	RECEPTOR-LIKE CYTOPLASMIC KINASE 117	Receptor-like Cytoplasmic Kinase 117	RECEPTOR-LIKE CYTOPLASMIC KINASE 117		3	LOC_Os03g56270	 Tolerance and resistance - Stress tolerance	Os03g0773700	LOC_Os03g56270.3, LOC_Os03g56270.2, LOC_Os03g56270.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18824	RLCK118	OsRLCK118	RECEPTOR-LIKE CYTOPLASMIC KINASE 118	Receptor-like Cytoplasmic Kinase 118	RECEPTOR-LIKE CYTOPLASMIC KINASE 118	osrlck118, osrlck118-1, osrlck118-2	3	LOC_Os03g60710. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:1903409 reactive oxygen species biosynthetic process.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os03g0821900	LOC_Os03g60710.1				GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0052033 - pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity, GO:0010200 - response to chitin, GO:0004674 - protein serine/threonine kinase activity, GO:0002237 - response to molecule of bacterial origin, GO:0043067 - regulation of programmed cell death, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0032494 - response to peptidoglycan	TO:0000074 - blast disease, TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000445 - seed number, TO:0000175 - bacterial blight disease resistance, TO:0000050 - inflorescence branching	
18825	RLCK119	OsRLCK119, OsBSK4, BSK4	RECEPTOR-LIKE CYTOPLASMIC KINASE 119	Receptor-like Cytoplasmic Kinase 119, BR-signaling kinase 4, brassinosteroid-signaling kinase 4, brassinosteroid-SIGNALING KINASE 4	RECEPTOR-LIKE CYTOPLASMIC KINASE 119		3	LOC_Os03g61010. a rice ortholog of AtBSK.		Os03g0825300	LOC_Os03g61010.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18826	RLCK120	OsRLCK120	RECEPTOR-LIKE CYTOPLASMIC KINASE 120	Receptor-like Cytoplasmic Kinase 120	RECEPTOR-LIKE CYTOPLASMIC KINASE 120		3	LOC_Os03g61060	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os03g0825800	LOC_Os03g61060.2, LOC_Os03g61060.1				GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0009697 - salicylic acid biosynthetic process, GO:0009627 - systemic acquired resistance, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004683 - calmodulin-dependent protein kinase activity	TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18827	RLCK121	OsRLCK121	RECEPTOR-LIKE CYTOPLASMIC KINASE 121	Receptor-like Cytoplasmic Kinase 121	RECEPTOR-LIKE CYTOPLASMIC KINASE 121		3	LOC_Os03g62180	 Tolerance and resistance - Disease resistance	Os03g0838100	LOC_Os03g62180.3, LOC_Os03g62180.2, LOC_Os03g62180.1				GO:0005886 - plasma membrane, GO:0006487 - protein amino acid N-linked glycosylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen	TO:0000175 - bacterial blight disease resistance	
18828	RLCK122	OsRLCK122	RECEPTOR-LIKE CYTOPLASMIC KINASE 122	Receptor-like Cytoplasmic Kinase 122	RECEPTOR-LIKE CYTOPLASMIC KINASE 122		3	LOC_Os03g62340	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os03g0839900	LOC_Os03g62340.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18829	RLCK123	OsRLCK123	RECEPTOR-LIKE CYTOPLASMIC KINASE 123	Receptor-like Cytoplasmic Kinase 123	RECEPTOR-LIKE CYTOPLASMIC KINASE 123		3	LOC_Os03g62700	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os03g0844100	LOC_Os03g62700.1				GO:0004713 - protein tyrosine kinase activity, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18830	RLCK124	OsRLCK124	RECEPTOR-LIKE CYTOPLASMIC KINASE 124	Receptor-like Cytoplasmic Kinase 124	RECEPTOR-LIKE CYTOPLASMIC KINASE 124		4	LOC_Os04g01860			LOC_Os04g01860						
18831	RLCK125	OsRLCK125	RECEPTOR-LIKE CYTOPLASMIC KINASE 125	Receptor-like Cytoplasmic Kinase 125	RECEPTOR-LIKE CYTOPLASMIC KINASE 125		4	LOC_Os04g01874		Os04g0109100	LOC_Os04g01874.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030246 - carbohydrate binding, GO:0005524 - ATP binding		
18832	RLCK126	OsRLCK126	RECEPTOR-LIKE CYTOPLASMIC KINASE 126	Receptor-like Cytoplasmic Kinase 126	RECEPTOR-LIKE CYTOPLASMIC KINASE 126		4	LOC_Os04g03370		Os04g0123700/Os04g0123750							
18833	RLCK127	OsRLCK127, CTB4a, qCTB4-1	RECEPTOR-LIKE CYTOPLASMIC KINASE 127	Receptor-like Cytoplasmic Kinase 127, cold tolerance at booting stage 4a	RECEPTOR-LIKE CYTOPLASMIC KINASE 127	ctb4a	4	LOC_Os04g04330. FJ693708.1. a conserved leucine-rich repeat receptor-like kinase. candidate gene for qSSR4.	 Tolerance and resistance - Stress tolerance	Os04g0132500	LOC_Os04g04330.2, LOC_Os04g04330.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009409 - response to cold, GO:0009986 - cell surface, GO:0009507 - chloroplast, GO:0005524 - ATP binding	TO:0000483 - germinability at low temperature, TO:0000371 - yield trait, TO:0000180 - spikelet fertility, TO:0000303 - cold tolerance, TO:0000421 - pollen fertility	PO:0020104 - leaf sheath , PO:0007134 - sporophyte vegetative stage , PO:0007014 - booting stage , PO:0025313 - tapetum , PO:0008013 - anther vascular system 
18834	RLCK128	OsRLCK128	RECEPTOR-LIKE CYTOPLASMIC KINASE 128	Receptor-like Cytoplasmic Kinase 128	RECEPTOR-LIKE CYTOPLASMIC KINASE 128		4	LOC_Os04g04800		Os04g0135400	LOC_Os04g04800.1						
18835	RLCK129	OsRLCK129	RECEPTOR-LIKE CYTOPLASMIC KINASE 129	Receptor-like Cytoplasmic Kinase 129	RECEPTOR-LIKE CYTOPLASMIC KINASE 129		4	LOC_Os04g06210		Os04g0146167	LOC_Os04g06210.1						
18836	RLCK130	OsRLCK130	RECEPTOR-LIKE CYTOPLASMIC KINASE 130	Receptor-like Cytoplasmic Kinase 130	RECEPTOR-LIKE CYTOPLASMIC KINASE 130		4	LOC_Os04g06244		Os04g0146300	LOC_Os04g06244.1						
18837	RLCK131	OsRLCK131	RECEPTOR-LIKE CYTOPLASMIC KINASE 131	Receptor-like Cytoplasmic Kinase 131	RECEPTOR-LIKE CYTOPLASMIC KINASE 131		4	LOC_Os04g07200		Os04g0155500	LOC_Os04g07200.1						
18838	RLCK132	OsRLCK132	RECEPTOR-LIKE CYTOPLASMIC KINASE 132	Receptor-like Cytoplasmic Kinase 132	RECEPTOR-LIKE CYTOPLASMIC KINASE 132		4	LOC_Os04g09770		Os04g0177000	LOC_Os04g09770.1						
18839	RLCK133	OsRLCK133	RECEPTOR-LIKE CYTOPLASMIC KINASE 133	Receptor-like Cytoplasmic Kinase 133	RECEPTOR-LIKE CYTOPLASMIC KINASE 133		4	LOC_Os04g12180			LOC_Os04g12180						
18840	RLCK134	OsRLCK134, OsLecRK1, LecRK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 134	Receptor-like Cytoplasmic Kinase 134, Lectin Receptor Kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 134		4	LOC_Os04g12540. KF748957-KF748964. Q7FAZ3.	 Tolerance and resistance - Insect resistance	Os04g0201900	LOC_Os04g12540.1				GO:0002213 - defense response to insect, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0016021 - integral to membrane, GO:0006952 - defense response, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane	TO:0000424 - brown planthopper resistance	
18841	RLCK135	OsRLCK135, OsLecRK3, LecRK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 135	Receptor-like Cytoplasmic Kinase 135, Lectin Receptor Kinase 3	RECEPTOR-LIKE CYTOPLASMIC KINASE 135		4	LOC_Os04g12580. KF748973-KF748980.	 Tolerance and resistance - Insect resistance	Os04g0202500	LOC_Os04g12580.1				GO:0004674 - protein serine/threonine kinase activity, GO:0002213 - defense response to insect, GO:0005524 - ATP binding, GO:0005886 - plasma membrane	TO:0000424 - brown planthopper resistance	
18842	RLCK136	OsRLCK136, OsLecRK4, LecRK4	RECEPTOR-LIKE CYTOPLASMIC KINASE 136	Receptor-like Cytoplasmic Kinase 136, Lectin Receptor Kinase 4	RECEPTOR-LIKE CYTOPLASMIC KINASE 136		4	LOC_Os04g12600. KF748981-KF748987.	 Tolerance and resistance - Insect resistance	Os04g0202800	LOC_Os04g12600.1				GO:0005886 - plasma membrane, GO:0002213 - defense response to insect, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000424 - brown planthopper resistance	
18843	RLCK137	OsRLCK137	RECEPTOR-LIKE CYTOPLASMIC KINASE 137	Receptor-like Cytoplasmic Kinase 137	RECEPTOR-LIKE CYTOPLASMIC KINASE 137		4	LOC_Os04g13640		Os04g0213800	LOC_Os04g13640.1						
18844	RLCK138	OsRLCK138	RECEPTOR-LIKE CYTOPLASMIC KINASE 138	Receptor-like Cytoplasmic Kinase 138	RECEPTOR-LIKE CYTOPLASMIC KINASE 138		4	LOC_Os04g15580		Os04g0226600	LOC_Os04g15580.1				GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18845	RLCK139	OsRLCK139	RECEPTOR-LIKE CYTOPLASMIC KINASE 139	Receptor-like Cytoplasmic Kinase 139	RECEPTOR-LIKE CYTOPLASMIC KINASE 139		4	LOC_Os04g23620			LOC_Os04g23620						
18846	RLCK141	OsRLCK141	RECEPTOR-LIKE CYTOPLASMIC KINASE 141	Receptor-like Cytoplasmic Kinase 141	RECEPTOR-LIKE CYTOPLASMIC KINASE 141		4	LOC_Os04g29740		Os04g0366401	LOC_Os04g29740.1						
18847	RLCK142	OsRLCK142	RECEPTOR-LIKE CYTOPLASMIC KINASE 142	Receptor-like Cytoplasmic Kinase 142	RECEPTOR-LIKE CYTOPLASMIC KINASE 142		4	LOC_Os04g29990		Os04g0368300	LOC_Os04g29990.1				GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		
18848	RLCK144	OsRLCK144	RECEPTOR-LIKE CYTOPLASMIC KINASE 144	Receptor-like Cytoplasmic Kinase 144	RECEPTOR-LIKE CYTOPLASMIC KINASE 144		4	LOC_Os04g30030		Os04g0369000/Os04g0369066					GO:0005198 - structural molecule activity		
18849	RLCK145	OsRLCK145	RECEPTOR-LIKE CYTOPLASMIC KINASE 145	Receptor-like Cytoplasmic Kinase 145	RECEPTOR-LIKE CYTOPLASMIC KINASE 145		4	LOC_Os04g30040		Os04g0369100	LOC_Os04g30040.2				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18850	RLCK146	OsRLCK146	RECEPTOR-LIKE CYTOPLASMIC KINASE 146	Receptor-like Cytoplasmic Kinase 146	RECEPTOR-LIKE CYTOPLASMIC KINASE 146		4	LOC_Os04g30060		Os04g0369300	LOC_Os04g30060.1						
18851	RLCK148	OsRLCK148	RECEPTOR-LIKE CYTOPLASMIC KINASE 148	Receptor-like Cytoplasmic Kinase 148	RECEPTOR-LIKE CYTOPLASMIC KINASE 148		4	LOC_Os04g30270		Os04g0371200	LOC_Os04g30270.1						
18852	RLCK149	OsRLCK149	RECEPTOR-LIKE CYTOPLASMIC KINASE 149	Receptor-like Cytoplasmic Kinase 149	RECEPTOR-LIKE CYTOPLASMIC KINASE 149		4	LOC_Os04g32310	 Tolerance and resistance - Disease resistance	Os04g0393900	LOC_Os04g32310.1				GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease	
18853	RLCK150	OsRLCK150	RECEPTOR-LIKE CYTOPLASMIC KINASE 150	Receptor-like Cytoplasmic Kinase 150	RECEPTOR-LIKE CYTOPLASMIC KINASE 150		4	LOC_Os04g34300		Os04g0420300	LOC_Os04g34300.1						
18854	RLCK151	OsRLCK151	RECEPTOR-LIKE CYTOPLASMIC KINASE 151	Receptor-like Cytoplasmic Kinase 151	RECEPTOR-LIKE CYTOPLASMIC KINASE 151		4	LOC_Os04g35080	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os04g0430000	LOC_Os04g35080.1				GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18855	RLCK152	OsRLCK152	RECEPTOR-LIKE CYTOPLASMIC KINASE 152	Receptor-like Cytoplasmic Kinase 152	RECEPTOR-LIKE CYTOPLASMIC KINASE 152		4	LOC_Os04g41310	 Reproductive organ - panicle,  Seed	Os04g0490500	LOC_Os04g41310.2, LOC_Os04g41310.1				GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18856	RLCK153	OsRLCK153	RECEPTOR-LIKE CYTOPLASMIC KINASE 153	Receptor-like Cytoplasmic Kinase 153	RECEPTOR-LIKE CYTOPLASMIC KINASE 153		4	LOC_Os04g42480	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os04g0503600	LOC_Os04g42480.1				GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18857	RLCK154	OsRLCK154, STRK1, OsSTRK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 154	Receptor-like Cytoplasmic Kinase 154, salt tolerance receptor-like cytoplasmic kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 154		4	LOC_Os04g45730	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os04g0540900	LOC_Os04g45730.1				GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide, GO:0048316 - seed development, GO:0010229 - inflorescence development	TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18858	RLCK155	OsRLCK155	RECEPTOR-LIKE CYTOPLASMIC KINASE 155	Receptor-like Cytoplasmic Kinase 155	RECEPTOR-LIKE CYTOPLASMIC KINASE 155		4	LOC_Os04g45920	 Reproductive organ - panicle,  Seed	Os04g0543000	LOC_Os04g45920.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18859	RLCK156	OsRLCK156	RECEPTOR-LIKE CYTOPLASMIC KINASE 156	Receptor-like Cytoplasmic Kinase 156	RECEPTOR-LIKE CYTOPLASMIC KINASE 156		4	LOC_Os04g46320	 Reproductive organ - panicle	Os04g0548400	LOC_Os04g46320.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18860	RLCK157	OsRLCK157	RECEPTOR-LIKE CYTOPLASMIC KINASE 157	Receptor-like Cytoplasmic Kinase 157	RECEPTOR-LIKE CYTOPLASMIC KINASE 157		4	LOC_Os04g47620	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os04g0563900	LOC_Os04g47620.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18861	RLCK158	OsRLCK158	RECEPTOR-LIKE CYTOPLASMIC KINASE 158	Receptor-like Cytoplasmic Kinase 158	RECEPTOR-LIKE CYTOPLASMIC KINASE 158		4	LOC_Os04g49460	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os04g0584100	LOC_Os04g49460.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development	TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18862	RLCK159	OsRLCK159	RECEPTOR-LIKE CYTOPLASMIC KINASE 159	Receptor-like Cytoplasmic Kinase 159	RECEPTOR-LIKE CYTOPLASMIC KINASE 159		4	LOC_Os04g52590		Os04g0616200/Os04g0616282					GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18863	RLCK160	OsRLCK160	RECEPTOR-LIKE CYTOPLASMIC KINASE 160	Receptor-like Cytoplasmic Kinase 160	RECEPTOR-LIKE CYTOPLASMIC KINASE 160		4	LOC_Os04g52840	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os04g0619400	LOC_Os04g52840.2, LOC_Os04g52840.1				GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold	TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18864	RLCK161	OsRLCK161, OsCrRLK1L9	RECEPTOR-LIKE CYTOPLASMIC KINASE 161	Receptor-like Cytoplasmic Kinase 161, Catharanthus roseus receptor-like kinase1-like kinase 9	RECEPTOR-LIKE CYTOPLASMIC KINASE 161		4	LOC_Os04g52860		Os04g0619600	LOC_Os04g52860.1				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18865	RLCK162	OsRLCK162	RECEPTOR-LIKE CYTOPLASMIC KINASE 162	Receptor-like Cytoplasmic Kinase 162	RECEPTOR-LIKE CYTOPLASMIC KINASE 162		4	LOC_Os04g53994	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os04g0631800	LOC_Os04g53994.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0048544 - recognition of pollen, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18866	RLCK163	OsRLCK163	RECEPTOR-LIKE CYTOPLASMIC KINASE 163	Receptor-like Cytoplasmic Kinase 163	RECEPTOR-LIKE CYTOPLASMIC KINASE 163		4	LOC_Os04g53998	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0632100	LOC_Os04g53998.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0048544 - recognition of pollen	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18867	RLCK164	OsRLCK164	RECEPTOR-LIKE CYTOPLASMIC KINASE 164	Receptor-like Cytoplasmic Kinase 164	RECEPTOR-LIKE CYTOPLASMIC KINASE 164		4	LOC_Os04g54110		Os04g0633600	LOC_Os04g54110.1						
18868	RLCK165	OsRLCK165	RECEPTOR-LIKE CYTOPLASMIC KINASE 165	Receptor-like Cytoplasmic Kinase 165	RECEPTOR-LIKE CYTOPLASMIC KINASE 165		4	LOC_Os04g54120		Os04g0633800	LOC_Os04g54120.1				GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18869	RLCK166	OsRLCK166	RECEPTOR-LIKE CYTOPLASMIC KINASE 166	Receptor-like Cytoplasmic Kinase 166	RECEPTOR-LIKE CYTOPLASMIC KINASE 166		4	LOC_Os04g54190	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os04g0634500	LOC_Os04g54190.3, LOC_Os04g54190.2, LOC_Os04g54190.1				GO:0050832 - defense response to fungus, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18870	RLCK167	OsRLCK167	RECEPTOR-LIKE CYTOPLASMIC KINASE 167	Receptor-like Cytoplasmic Kinase 167	RECEPTOR-LIKE CYTOPLASMIC KINASE 167		4	LOC_Os04g56060	 Tolerance and resistance - Stress tolerance	Os04g0654600	LOC_Os04g56060.1				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18871	RLCK168	OsRLCK168	RECEPTOR-LIKE CYTOPLASMIC KINASE 168	Receptor-like Cytoplasmic Kinase 168	RECEPTOR-LIKE CYTOPLASMIC KINASE 168		4	LOC_Os04g56110	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os04g0655300	LOC_Os04g56110.3, LOC_Os04g56110.2, LOC_Os04g56110.1				GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18872	RLCK169	OsRLCK169	RECEPTOR-LIKE CYTOPLASMIC KINASE 169	Receptor-like Cytoplasmic Kinase 169	RECEPTOR-LIKE CYTOPLASMIC KINASE 169		4	LOC_Os04g56120		Os04g0655400	LOC_Os04g56120.1						
18873	RLCK170	OsRLCK170	RECEPTOR-LIKE CYTOPLASMIC KINASE 170	Receptor-like Cytoplasmic Kinase 170	RECEPTOR-LIKE CYTOPLASMIC KINASE 170		4	LOC_Os04g56130			LOC_Os04g56130						
18874	RLCK171	OsRLCK171	RECEPTOR-LIKE CYTOPLASMIC KINASE 171	Receptor-like Cytoplasmic Kinase 171	RECEPTOR-LIKE CYTOPLASMIC KINASE 171		4	LOC_Os04g56360		Os04g0658700	LOC_Os04g56360.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18875	RLCK172	OsRLCK172	RECEPTOR-LIKE CYTOPLASMIC KINASE 172	Receptor-like Cytoplasmic Kinase 172	RECEPTOR-LIKE CYTOPLASMIC KINASE 172		4	LOC_Os04g58250	 Tolerance and resistance - Disease resistance	Os04g0679150/Os04g0679200					GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18876	RLCK173	OsRLCK173, OsBSK3, BSK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 173	Receptor-like Cytoplasmic Kinase 173, BR-signaling kinase 3, brassinosteroid-signaling kinase 3, brassinosteroid-SIGNALING KINASE 3	RECEPTOR-LIKE CYTOPLASMIC KINASE 173		4	LOC_Os04g58750. a rice ortholog of AtBSK. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance	Os04g0684200	LOC_Os04g58750.4, LOC_Os04g58750.3, LOC_Os04g58750.2, LOC_Os04g58750.1				GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0009742 - brassinosteroid mediated signaling, GO:0050832 - defense response to fungus, GO:0009741 - response to brassinosteroid stimulus, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000175 - bacterial blight disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18877	RLCK174	OsRLCK174	RECEPTOR-LIKE CYTOPLASMIC KINASE 174	Receptor-like Cytoplasmic Kinase 174	RECEPTOR-LIKE CYTOPLASMIC KINASE 174		4	LOC_Os04g58910	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os04g0685900	LOC_Os04g58910.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0016021 - integral to membrane, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18878	RLCK175	OsRLCK175	RECEPTOR-LIKE CYTOPLASMIC KINASE 175	Receptor-like Cytoplasmic Kinase 175	RECEPTOR-LIKE CYTOPLASMIC KINASE 175		5	LOC_Os05g01040. Extensin family protein.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os05g0100700	LOC_Os05g01040.4, LOC_Os05g01040.3, LOC_Os05g01040.2, LOC_Os05g01040.1				GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18879	RLCK177	OsRLCK177	RECEPTOR-LIKE CYTOPLASMIC KINASE 177	Receptor-like Cytoplasmic Kinase 177	RECEPTOR-LIKE CYTOPLASMIC KINASE 177		5	LOC_Os05g03460	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os05g0125300	LOC_Os05g03460.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18880	RLCK179	OsRLCK179	RECEPTOR-LIKE CYTOPLASMIC KINASE 179	Receptor-like Cytoplasmic Kinase 179	RECEPTOR-LIKE CYTOPLASMIC KINASE 179		5	LOC_Os05g07080		Os05g0163500	LOC_Os05g07080.1						
18881	RLCK180	OsRLCK180	RECEPTOR-LIKE CYTOPLASMIC KINASE 180	Receptor-like Cytoplasmic Kinase 180	RECEPTOR-LIKE CYTOPLASMIC KINASE 180		5	LOC_Os05g07470		Os05g0166900	LOC_Os05g07470.1						
18882	RLCK181	OsRLCK181	RECEPTOR-LIKE CYTOPLASMIC KINASE 181	Receptor-like Cytoplasmic Kinase 181	RECEPTOR-LIKE CYTOPLASMIC KINASE 181		5	LOC_Os05g12680	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os05g0218400	LOC_Os05g12680.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0048316 - seed development	TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18883	RLCK182	OsRLCK182	RECEPTOR-LIKE CYTOPLASMIC KINASE 182	Receptor-like Cytoplasmic Kinase 182	RECEPTOR-LIKE CYTOPLASMIC KINASE 182		5	LOC_Os05g14030			LOC_Os05g14030						
18884	RLCK183	OsRLCK183, OsCrRLK1L2	RECEPTOR-LIKE CYTOPLASMIC KINASE 183	Receptor-like Cytoplasmic Kinase 183, Catharanthus roseus receptor-like kinase1-like kinase 2	RECEPTOR-LIKE CYTOPLASMIC KINASE 183		5	LOC_Os05g25370	 Tolerance and resistance	Os05g0317900	LOC_Os05g25370.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0007623 - circadian rhythm, GO:0005618 - cell wall		PO:0025034 - leaf 
18885	RLCK184	OsRLCK184	RECEPTOR-LIKE CYTOPLASMIC KINASE 184	Receptor-like Cytoplasmic Kinase 184	RECEPTOR-LIKE CYTOPLASMIC KINASE 184		5	LOC_Os05g30820	 Tolerance and resistance - Stress tolerance	Os05g0371600	LOC_Os05g30820.2, LOC_Os05g30820.1				GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
18886	RLCK186	OsRLCK186	RECEPTOR-LIKE CYTOPLASMIC KINASE 186	Receptor-like Cytoplasmic Kinase 186	RECEPTOR-LIKE CYTOPLASMIC KINASE 186		5	LOC_Os05g32170	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os05g0387700	LOC_Os05g32170.1				GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005576 - extracellular region	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18887	RLCK187	OsRLCK187	RECEPTOR-LIKE CYTOPLASMIC KINASE 187	Receptor-like Cytoplasmic Kinase 187	RECEPTOR-LIKE CYTOPLASMIC KINASE 187		5	LOC_Os05g38010		Os05g0454300	LOC_Os05g38010.1						
18888	RLCK188	OsRLCK188	RECEPTOR-LIKE CYTOPLASMIC KINASE 188	Receptor-like Cytoplasmic Kinase 188	RECEPTOR-LIKE CYTOPLASMIC KINASE 188		5	LOC_Os05g38770		Os05g0463000	LOC_Os05g38770.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18889	RLCK189	OsRLCK189, OsSTA156	RECEPTOR-LIKE CYTOPLASMIC KINASE 189	Receptor-like Cytoplasmic Kinase 189	RECEPTOR-LIKE CYTOPLASMIC KINASE 189		5	LOC_Os05g41950. a mature anther-preferentially expressed gene.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0498900	LOC_Os05g41950.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009066 - anther 
18890	RLCK190	OsRLCK190	RECEPTOR-LIKE CYTOPLASMIC KINASE 190	Receptor-like Cytoplasmic Kinase 190	RECEPTOR-LIKE CYTOPLASMIC KINASE 190		5	LOC_Os05g45010		Os05g0525800	LOC_Os05g45010.1, LOC_Os05g45000.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18891	RLCK191	OsRLCK191	RECEPTOR-LIKE CYTOPLASMIC KINASE 191	Receptor-like Cytoplasmic Kinase 191	RECEPTOR-LIKE CYTOPLASMIC KINASE 191		5	LOC_Os05g51190	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0589700	LOC_Os05g51190.5, LOC_Os05g51190.4, LOC_Os05g51190.3, LOC_Os05g51190.2				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0004672 - protein kinase activity	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18892	RLCK193	OsRLCK193, OsCrRLK1L13	RECEPTOR-LIKE CYTOPLASMIC KINASE 193	Receptor-like Cytoplasmic Kinase 193, Catharanthus roseus receptor-like kinase1-like kinase 13	RECEPTOR-LIKE CYTOPLASMIC KINASE 193		6	LOC_Os06g03610	 Reproductive organ - panicle	Os06g0126250	LOC_Os06g03610.1				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18893	RLCK195	OsRLCK195	RECEPTOR-LIKE CYTOPLASMIC KINASE 195	Receptor-like Cytoplasmic Kinase 195	RECEPTOR-LIKE CYTOPLASMIC KINASE 195		6	LOC_Os06g05050	 Tolerance and resistance - Stress tolerance	Os06g0142500	LOC_Os06g05050.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0004672 - protein kinase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18894	RLCK196	OsRLCK196	RECEPTOR-LIKE CYTOPLASMIC KINASE 196	Receptor-like Cytoplasmic Kinase 196	RECEPTOR-LIKE CYTOPLASMIC KINASE 196		6	LOC_Os06g05830		Os06g0151700	LOC_Os06g05830.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18895	RLCK198	OsRLCK198	RECEPTOR-LIKE CYTOPLASMIC KINASE 198	Receptor-like Cytoplasmic Kinase 198	RECEPTOR-LIKE CYTOPLASMIC KINASE 198		6	LOC_Os06g06960		Os06g0165500	LOC_Os06g06960.1				GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity		
18896	RLCK199	OsRLCK199	RECEPTOR-LIKE CYTOPLASMIC KINASE 199	Receptor-like Cytoplasmic Kinase 199	RECEPTOR-LIKE CYTOPLASMIC KINASE 199		6	LOC_Os06g07070	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0166900	LOC_Os06g07070.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
18897	RLCK200	OsRLCK200	RECEPTOR-LIKE CYTOPLASMIC KINASE 200	Receptor-like Cytoplasmic Kinase 200	RECEPTOR-LIKE CYTOPLASMIC KINASE 200		6	LOC_Os06g07230	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os06g0168800	LOC_Os06g07230.1				GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18898	RLCK201	OsRLCK201	RECEPTOR-LIKE CYTOPLASMIC KINASE 201	Receptor-like Cytoplasmic Kinase 201	RECEPTOR-LIKE CYTOPLASMIC KINASE 201		6	LOC_Os06g09230		Os06g0191900	LOC_Os06g09230.2				GO:0006950 - response to stress		
18899	RLCK202	OsRLCK202	RECEPTOR-LIKE CYTOPLASMIC KINASE 202	Receptor-like Cytoplasmic Kinase 202	RECEPTOR-LIKE CYTOPLASMIC KINASE 202		6	LOC_Os06g09860		Os06g0198900	LOC_Os06g09860.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18900	RLCK203	OsRLCK203	RECEPTOR-LIKE CYTOPLASMIC KINASE 203	Receptor-like Cytoplasmic Kinase 203	RECEPTOR-LIKE CYTOPLASMIC KINASE 203		6	LOC_Os06g10160	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os06g0202900	LOC_Os06g10160.1				GO:0009409 - response to cold, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development	TO:0000303 - cold tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18901	RLCK204	OsRLCK204, OsER1, ER1	RECEPTOR-LIKE CYTOPLASMIC KINASE 204	Receptor-like Cytoplasmic Kinase 204, ERECTA 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 204	oser1-wu1, oser1-wu2, oser1-ka	6	LOC_Os06g10230.  a rice ortholog of Arabidopsis ERECTA. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os06g0203800	LOC_Os06g10230.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0048316 - seed development, GO:0016021 - integral to membrane, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0042127 - regulation of cell proliferation, GO:0001558 - regulation of cell growth, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000455 - seed set percent, TO:0000072 - awn length, TO:0006032 - panicle size, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000653 - seed development trait, TO:0000207 - plant height	PO:0009047 - stem , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009029 - stamen , PO:0009051 - spikelet , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed 
18902	RLCK205	OsRLCK205	RECEPTOR-LIKE CYTOPLASMIC KINASE 205	Receptor-like Cytoplasmic Kinase 205	RECEPTOR-LIKE CYTOPLASMIC KINASE 205		6	LOC_Os06g18810			LOC_Os06g18810						
18903	RLCK206	OsRLCK206	RECEPTOR-LIKE CYTOPLASMIC KINASE 206	Receptor-like Cytoplasmic Kinase 206	RECEPTOR-LIKE CYTOPLASMIC KINASE 206		6	LOC_Os06g34960	 Tolerance and resistance - Disease resistance	Os06g0541600	LOC_Os06g34970.1, LOC_Os06g34960.1				GO:0004672 - protein kinase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18904	RLCK208	OsRLCK208	RECEPTOR-LIKE CYTOPLASMIC KINASE 208	Receptor-like Cytoplasmic Kinase 208	RECEPTOR-LIKE CYTOPLASMIC KINASE 208		6	LOC_Os06g38100			LOC_Os06g38100						
18905	RLCK209	OsRLCK209	RECEPTOR-LIKE CYTOPLASMIC KINASE 209	Receptor-like Cytoplasmic Kinase 209	RECEPTOR-LIKE CYTOPLASMIC KINASE 209		6	LOC_Os06g41500		Os06g0619200	LOC_Os06g41500.1						
18906	RLCK210	OsRLCK210	RECEPTOR-LIKE CYTOPLASMIC KINASE 210	Receptor-like Cytoplasmic Kinase 210	RECEPTOR-LIKE CYTOPLASMIC KINASE 210		6	LOC_Os06g44430		Os06g0654600	LOC_Os06g44430.1						
18907	RLCK211	OsRLCK211	RECEPTOR-LIKE CYTOPLASMIC KINASE 211	Receptor-like Cytoplasmic Kinase 211	RECEPTOR-LIKE CYTOPLASMIC KINASE 211		6	LOC_Os06g45280	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os06g0663200	LOC_Os06g45280.1				GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
18908	RLCK212	OsRLCK212	RECEPTOR-LIKE CYTOPLASMIC KINASE 212	Receptor-like Cytoplasmic Kinase 212	RECEPTOR-LIKE CYTOPLASMIC KINASE 212		6	LOC_Os06g45350	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0663900	LOC_Os06g45350.5, LOC_Os06g45350.2, LOC_Os06g45350.1				GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18909	RLCK213	OsRLCK213	RECEPTOR-LIKE CYTOPLASMIC KINASE 213	Receptor-like Cytoplasmic Kinase 213	RECEPTOR-LIKE CYTOPLASMIC KINASE 213		6	LOC_Os06g46330	 Reproductive organ - panicle,  Seed	Os06g0676600	LOC_Os06g46330.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18910	RLCK214	OsRLCK214	RECEPTOR-LIKE CYTOPLASMIC KINASE 214	Receptor-like Cytoplasmic Kinase 214	RECEPTOR-LIKE CYTOPLASMIC KINASE 214		6	LOC_Os06g47470	 Tolerance and resistance - Disease resistance	Os06g0689600	LOC_Os06g47470.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18911	RLCK215	OsRLCK215	RECEPTOR-LIKE CYTOPLASMIC KINASE 215	Receptor-like Cytoplasmic Kinase 215	RECEPTOR-LIKE CYTOPLASMIC KINASE 215		6	LOC_Os06g47530	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance	Os06g0690200	LOC_Os06g47530.1				GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18912	RLCK216	OsRLCK216, OsRRK1, RRK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 216	Receptor-like Cytoplasmic Kinase 216, Rop-interacting receptor-like kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 216		6	LOC_Os06g47820. KY347802. an AtRRK1 homolog. TO:0000748: leaf morphology trait. TO:0000872: leaf erect. TO:0006064: rolled leaf.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os06g0693200	LOC_Os06g47820.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0002213 - defense response to insect	TO:0000346 - tiller number, TO:0006001 - salt tolerance, TO:0000180 - spikelet fertility, TO:0000621 - inflorescence development trait, TO:0000424 - brown planthopper resistance, TO:0000207 - plant height	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18913	RLCK217	OsRLCK217	RECEPTOR-LIKE CYTOPLASMIC KINASE 217	Receptor-like Cytoplasmic Kinase 217	RECEPTOR-LIKE CYTOPLASMIC KINASE 217		6	LOC_Os06g48980		Os06g0703000	LOC_Os06g48980.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18914	RLCK218	OsRLCK218	RECEPTOR-LIKE CYTOPLASMIC KINASE 218	Receptor-like Cytoplasmic Kinase 218	RECEPTOR-LIKE CYTOPLASMIC KINASE 218		6	LOC_Os06g50100	 Reproductive organ - panicle,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0714900	LOC_Os06g50100.1				GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium	TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18915	RLCK220	OsRLCK220	RECEPTOR-LIKE CYTOPLASMIC KINASE 220	Receptor-like Cytoplasmic Kinase 220	RECEPTOR-LIKE CYTOPLASMIC KINASE 220		6	LOC_Os06g51170	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0727400	LOC_Os06g51170.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18916	RLCK221	OsRLCK221	RECEPTOR-LIKE CYTOPLASMIC KINASE 221	Receptor-like Cytoplasmic Kinase 221	RECEPTOR-LIKE CYTOPLASMIC KINASE 221		7	LOC_Os07g03860			LOC_Os07g03860						
18917	RLCK222	OsRLCK222	RECEPTOR-LIKE CYTOPLASMIC KINASE 222	Receptor-like Cytoplasmic Kinase 222	RECEPTOR-LIKE CYTOPLASMIC KINASE 222		7	LOC_Os07g04190.  a rice ortholog of Arabidopsis BAM3.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os07g0134200	LOC_Os07g04190.1				GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0016021 - integral to membrane, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18918	RLCK223	OsRLCK223	RECEPTOR-LIKE CYTOPLASMIC KINASE 223	Receptor-like Cytoplasmic Kinase 223	RECEPTOR-LIKE CYTOPLASMIC KINASE 223		7	LOC_Os07g06570	 Tolerance and resistance - Stress tolerance	Os07g0159700	LOC_Os07g06570.1				GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18919	RLCK224	OsRLCK224	RECEPTOR-LIKE CYTOPLASMIC KINASE 224	Receptor-like Cytoplasmic Kinase 224	RECEPTOR-LIKE CYTOPLASMIC KINASE 224		7	LOC_Os07g07390		Os07g0169300	LOC_Os07g07390.1						
18920	RLCK225	OsRLCK225	RECEPTOR-LIKE CYTOPLASMIC KINASE 225	Receptor-like Cytoplasmic Kinase 225	RECEPTOR-LIKE CYTOPLASMIC KINASE 225		7	LOC_Os07g14490		Os07g0248600	LOC_Os07g14490.1						
18921	RLCK226	OsRLCK226	RECEPTOR-LIKE CYTOPLASMIC KINASE 226	Receptor-like Cytoplasmic Kinase 226	RECEPTOR-LIKE CYTOPLASMIC KINASE 226		7	LOC_Os07g15930		Os07g0262600	LOC_Os07g15930.1						
18922	RLCK227	OsRLCK227	RECEPTOR-LIKE CYTOPLASMIC KINASE 227	Receptor-like Cytoplasmic Kinase 227	RECEPTOR-LIKE CYTOPLASMIC KINASE 227		7	LOC_Os07g26180		Os07g0443700	LOC_Os07g26180.1, LOC_Os07g26170.1						
18923	RLCK231	OsRLCK231	RECEPTOR-LIKE CYTOPLASMIC KINASE 231	Receptor-like Cytoplasmic Kinase 231	RECEPTOR-LIKE CYTOPLASMIC KINASE 231		7	LOC_Os07g31250		Os07g0494800	LOC_Os07g31250.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18924	RLCK232	OsRLCK232	RECEPTOR-LIKE CYTOPLASMIC KINASE 232	Receptor-like Cytoplasmic Kinase 232	RECEPTOR-LIKE CYTOPLASMIC KINASE 232		7	LOC_Os07g31290		Os07g0495150	LOC_Os07g31290.1						
18925	RLCK233	OsRLCK233	RECEPTOR-LIKE CYTOPLASMIC KINASE 233	Receptor-like Cytoplasmic Kinase 233	RECEPTOR-LIKE CYTOPLASMIC KINASE 233		7	LOC_Os07g34980		Os07g0534500	LOC_Os07g34980.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18926	RLCK234	OsRLCK234	RECEPTOR-LIKE CYTOPLASMIC KINASE 234	Receptor-like Cytoplasmic Kinase 234	RECEPTOR-LIKE CYTOPLASMIC KINASE 234		7	LOC_Os07g35280	 Tolerance and resistance - Disease resistance	Os07g0537200	LOC_Os07g35280.1				GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
18927	RLCK235	OsRLCK235	RECEPTOR-LIKE CYTOPLASMIC KINASE 235	Receptor-like Cytoplasmic Kinase 235	RECEPTOR-LIKE CYTOPLASMIC KINASE 235		7	LOC_Os07g35390	 Tolerance and resistance - Disease resistance	Os07g0538400	LOC_Os07g35390.1				GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18928	RLCK236	OsRLCK236	RECEPTOR-LIKE CYTOPLASMIC KINASE 236	Receptor-like Cytoplasmic Kinase 236	RECEPTOR-LIKE CYTOPLASMIC KINASE 236		7	LOC_Os07g35630	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os07g0540500	LOC_Os07g35630.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0003676 - nucleic acid binding	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18929	RLCK237	OsRLCK237	RECEPTOR-LIKE CYTOPLASMIC KINASE 237	Receptor-like Cytoplasmic Kinase 237	RECEPTOR-LIKE CYTOPLASMIC KINASE 237		7	LOC_Os07g35730		Os07g0541700	LOC_Os07g35730.2, LOC_Os07g35730.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18930	RLCK238	OsRLCK238	RECEPTOR-LIKE CYTOPLASMIC KINASE 238	Receptor-like Cytoplasmic Kinase 238	RECEPTOR-LIKE CYTOPLASMIC KINASE 238		7	LOC_Os07g35770			LOC_Os07g35770						
18931	RLCK239	OsRLCK239	RECEPTOR-LIKE CYTOPLASMIC KINASE 239	Receptor-like Cytoplasmic Kinase 239	RECEPTOR-LIKE CYTOPLASMIC KINASE 239		7	LOC_Os07g36980		Os07g0555700	LOC_Os07g36980.1						
18932	RLCK240	OsRLCK240	RECEPTOR-LIKE CYTOPLASMIC KINASE 240	Receptor-like Cytoplasmic Kinase 240	RECEPTOR-LIKE CYTOPLASMIC KINASE 240		7	LOC_Os07g47270	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0668900	LOC_Os07g47270.1				GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18933	RLCK241	OsRLCK241	RECEPTOR-LIKE CYTOPLASMIC KINASE 241	Receptor-like Cytoplasmic Kinase 241	RECEPTOR-LIKE CYTOPLASMIC KINASE 241		7	LOC_Os07g48730	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0686800	LOC_Os07g48730.1				GO:0042742 - defense response to bacterium, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0050832 - defense response to fungus	TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18934	RLCK242	OsRLCK242	RECEPTOR-LIKE CYTOPLASMIC KINASE 242	Receptor-like Cytoplasmic Kinase 242	RECEPTOR-LIKE CYTOPLASMIC KINASE 242		7	LOC_Os07g49240	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os07g0693000	LOC_Os07g49240.1				GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18935	RLCK243	OsRLCK243	RECEPTOR-LIKE CYTOPLASMIC KINASE 243	Receptor-like Cytoplasmic Kinase 243	RECEPTOR-LIKE CYTOPLASMIC KINASE 243		7	LOC_Os07g49470	 Seed,  Tolerance and resistance	Os07g0695300	LOC_Os07g49470.1				GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009611 - response to wounding, GO:0045892 - negative regulation of transcription, DNA-dependent	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
18936	RLCK244	OsRLCK244	RECEPTOR-LIKE CYTOPLASMIC KINASE 244	Receptor-like Cytoplasmic Kinase 244	RECEPTOR-LIKE CYTOPLASMIC KINASE 244		8	LOC_Os08g03040			LOC_Os08g03040						
18937	RLCK245	OsRLCK245	RECEPTOR-LIKE CYTOPLASMIC KINASE 245	Receptor-like Cytoplasmic Kinase 245	RECEPTOR-LIKE CYTOPLASMIC KINASE 245		8	LOC_Os08g04420		Os08g0138700	LOC_Os08g04420.2, LOC_Os08g04420.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18938	RLCK247	OsRLCK247	RECEPTOR-LIKE CYTOPLASMIC KINASE 247	Receptor-like Cytoplasmic Kinase 247	RECEPTOR-LIKE CYTOPLASMIC KINASE 247		8	LOC_Os08g10070	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os08g0200500	LOC_Os08g10070.2, LOC_Os08g10070.1				GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18939	RLCK248	OsRLCK248	RECEPTOR-LIKE CYTOPLASMIC KINASE 248	Receptor-like Cytoplasmic Kinase 248	RECEPTOR-LIKE CYTOPLASMIC KINASE 248		8	LOC_Os08g13870		Os08g0236400	LOC_Os08g13870.1						
18940	RLCK249	OsRLCK249	RECEPTOR-LIKE CYTOPLASMIC KINASE 249	Receptor-like Cytoplasmic Kinase 249	RECEPTOR-LIKE CYTOPLASMIC KINASE 249		8	LOC_Os08g15060	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os08g0249100	LOC_Os08g15060.1				GO:0009651 - response to salt stress, GO:0002238 - response to molecule of fungal origin, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18941	RLCK250	OsRLCK250	RECEPTOR-LIKE CYTOPLASMIC KINASE 250	Receptor-like Cytoplasmic Kinase 250	RECEPTOR-LIKE CYTOPLASMIC KINASE 250		8	LOC_Os08g24630	 Tolerance and resistance - Disease resistance		LOC_Os08g24630				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18942	RLCK251	OsRLCK251	RECEPTOR-LIKE CYTOPLASMIC KINASE 251	Receptor-like Cytoplasmic Kinase 251	RECEPTOR-LIKE CYTOPLASMIC KINASE 251		8	LOC_Os08g25430		Os08g0343000	LOC_Os08g25430.2, LOC_Os08g25430.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18943	RLCK253	OsRLCK253	RECEPTOR-LIKE CYTOPLASMIC KINASE 253	Receptor-like Cytoplasmic Kinase 253	RECEPTOR-LIKE CYTOPLASMIC KINASE 253		8	LOC_Os08g28710	 Tolerance and resistance - Stress tolerance	Os08g0374600/Os08g0374701					GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18944	RLCK254	OsRLCK254	RECEPTOR-LIKE CYTOPLASMIC KINASE 254	Receptor-like Cytoplasmic Kinase 254	RECEPTOR-LIKE CYTOPLASMIC KINASE 254		8	LOC_Os08g29040		Os08g0378300	LOC_Os08g29040.1						
18945	RLCK255	OsRLCK255	RECEPTOR-LIKE CYTOPLASMIC KINASE 255	Receptor-like Cytoplasmic Kinase 255	RECEPTOR-LIKE CYTOPLASMIC KINASE 255		8	LOC_Os08g35600	 Tolerance and resistance - Stress tolerance	Os08g0457400	LOC_Os08g35600.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18946	RLCK256	OsRLCK256	RECEPTOR-LIKE CYTOPLASMIC KINASE 256	Receptor-like Cytoplasmic Kinase 256	RECEPTOR-LIKE CYTOPLASMIC KINASE 256		8	LOC_Os08g38560		Os08g0493800	LOC_Os08g38560.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
18947	RLCK257	OsRLCK257	RECEPTOR-LIKE CYTOPLASMIC KINASE 257	Receptor-like Cytoplasmic Kinase 257	RECEPTOR-LIKE CYTOPLASMIC KINASE 257		8	LOC_Os08g39590	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os08g0506400	LOC_Os08g39590.1				GO:0004672 - protein kinase activity, GO:0048316 - seed development, GO:0016021 - integral to membrane, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18948	RLCK258	OsRLCK258	RECEPTOR-LIKE CYTOPLASMIC KINASE 258	Receptor-like Cytoplasmic Kinase 258	RECEPTOR-LIKE CYTOPLASMIC KINASE 258		8	LOC_Os08g40990		Os08g0521200	LOC_Os08g40990.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18949	RLCK259	OsRLCK259	RECEPTOR-LIKE CYTOPLASMIC KINASE 259	Receptor-like Cytoplasmic Kinase 259	RECEPTOR-LIKE CYTOPLASMIC KINASE 259		9	LOC_Os09g03620	 Seed	Os09g0123300	LOC_Os09g03620.1				GO:0048316 - seed development, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005737 - cytoplasm, GO:0031348 - negative regulation of defense response, GO:0004674 - protein serine/threonine kinase activity, GO:0009627 - systemic acquired resistance, GO:0009697 - salicylic acid biosynthetic process, GO:0005524 - ATP binding	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
18950	RLCK260	OsRLCK260	RECEPTOR-LIKE CYTOPLASMIC KINASE 260	Receptor-like Cytoplasmic Kinase 260	RECEPTOR-LIKE CYTOPLASMIC KINASE 260		9	LOC_Os09g12300			LOC_Os09g12300						
18951	RLCK261	OsRLCK261	RECEPTOR-LIKE CYTOPLASMIC KINASE 261	Receptor-like Cytoplasmic Kinase 261	RECEPTOR-LIKE CYTOPLASMIC KINASE 261		9	LOC_Os09g15580		Os09g0325000/Os09g0325140/Os09g0325180							
18952	RLCK262	OsRLCK262	RECEPTOR-LIKE CYTOPLASMIC KINASE 262	Receptor-like Cytoplasmic Kinase 262	RECEPTOR-LIKE CYTOPLASMIC KINASE 262		9	LOC_Os09g16590			LOC_Os09g16590						
18953	RLCK263	OsRLCK263	RECEPTOR-LIKE CYTOPLASMIC KINASE 263	Receptor-like Cytoplasmic Kinase 263	RECEPTOR-LIKE CYTOPLASMIC KINASE 263		9	LOC_Os09g17890		Os09g0348400	LOC_Os09g17890.1, LOC_Os09g17880.1						
18954	RLCK264	OsRLCK264	RECEPTOR-LIKE CYTOPLASMIC KINASE 264	Receptor-like Cytoplasmic Kinase 264	RECEPTOR-LIKE CYTOPLASMIC KINASE 264		9	LOC_Os09g17910		Os09g0348600	LOC_Os09g17910.1						
18955	RLCK265	OsRLCK265	RECEPTOR-LIKE CYTOPLASMIC KINASE 265	Receptor-like Cytoplasmic Kinase 265	RECEPTOR-LIKE CYTOPLASMIC KINASE 265		9	LOC_Os09g18230		Os09g0351700/Os09g0351800					GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18956	RLCK266	OsRLCK266, OsSIRK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 266	Receptor-like Cytoplasmic Kinase 266	RECEPTOR-LIKE CYTOPLASMIC KINASE 266		9	LOC_Os09g19140. a leucine-rich-repeat (LRR) receptor-like protein kinase.	 Tolerance and resistance - Disease resistance	Os09g0356000	LOC_Os09g19140.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18957	RLCK267	OsRLCK267, OsRPK1, RPK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 267	Receptor-like Cytoplasmic Kinase 267, receptor protein kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 267		9	LOC_Os09g19380. Os09g0358400 in RAP3 (RapDB build 5).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os09g19380				GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
18958	RLCK269	OsRLCK269	RECEPTOR-LIKE CYTOPLASMIC KINASE 269	Receptor-like Cytoplasmic Kinase 269	RECEPTOR-LIKE CYTOPLASMIC KINASE 269		9	LOC_Os09g20880		Os09g0375600	LOC_Os09g20880.2, LOC_Os09g20880.1				GO:0004674 - protein serine/threonine kinase activity, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0045492 - xylan biosynthetic process, GO:0016926 - protein desumoylation, GO:0010413 - glucuronoxylan metabolic process, GO:0010228 - vegetative to reproductive phase transition, GO:0005524 - ATP binding		
18959	RLCK270	OsRLCK270	RECEPTOR-LIKE CYTOPLASMIC KINASE 270	Receptor-like Cytoplasmic Kinase 270	RECEPTOR-LIKE CYTOPLASMIC KINASE 270		9	LOC_Os09g24330		Os09g0408900	LOC_Os09g24330.1						
18960	RLCK271	OsRLCK271	RECEPTOR-LIKE CYTOPLASMIC KINASE 271	Receptor-like Cytoplasmic Kinase 271	RECEPTOR-LIKE CYTOPLASMIC KINASE 271		9	LOC_Os09g24340 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18961	RLCK272	OsRLCK272	RECEPTOR-LIKE CYTOPLASMIC KINASE 272	Receptor-like Cytoplasmic Kinase 272	RECEPTOR-LIKE CYTOPLASMIC KINASE 272		9	LOC_Os09g27010	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os09g0442100	LOC_Os09g27010.1				GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18962	RLCK275	OsRLCK275	RECEPTOR-LIKE CYTOPLASMIC KINASE 275	Receptor-like Cytoplasmic Kinase 275	RECEPTOR-LIKE CYTOPLASMIC KINASE 275		9	LOC_Os09g30190		Os09g0479200	LOC_Os09g30190.1						
18963	RLCK277	OsRLCK277	RECEPTOR-LIKE CYTOPLASMIC KINASE 277	Receptor-like Cytoplasmic Kinase 277	RECEPTOR-LIKE CYTOPLASMIC KINASE 277		9	LOC_Os09g33860	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0513600	LOC_Os09g33860.1				GO:0004672 - protein kinase activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
18964	RLCK279	OsRLCK279	RECEPTOR-LIKE CYTOPLASMIC KINASE 279	Receptor-like Cytoplasmic Kinase 279	RECEPTOR-LIKE CYTOPLASMIC KINASE 279		9	LOC_Os09g37800		Os09g0550600	LOC_Os09g37800.1						
18965	RLCK282	OsRLCK282	RECEPTOR-LIKE CYTOPLASMIC KINASE 282	Receptor-like Cytoplasmic Kinase 282	RECEPTOR-LIKE CYTOPLASMIC KINASE 282		9	LOC_Os09g39650	 Reproductive organ - panicle,  Seed,  Tolerance and resistance	Os09g0570100	LOC_Os09g39650.3, LOC_Os09g39650.2, LOC_Os09g39650.1				GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18966	RLCK283	OsRLCK283	RECEPTOR-LIKE CYTOPLASMIC KINASE 283	Receptor-like Cytoplasmic Kinase 283	RECEPTOR-LIKE CYTOPLASMIC KINASE 283		9	LOC_Os09g39860	 Tolerance and resistance	Os09g0572100	LOC_Os09g39860.1				GO:0004672 - protein kinase activity, GO:0009611 - response to wounding, GO:0005524 - ATP binding		
18967	RLCK288	OsRLCK288	RECEPTOR-LIKE CYTOPLASMIC KINASE 288	Receptor-like Cytoplasmic Kinase 288	RECEPTOR-LIKE CYTOPLASMIC KINASE 288		10	LOC_Os10g02990			LOC_Os10g02990				GO:0005524 - ATP binding		
18968	RLCK289	OsRLCK289	RECEPTOR-LIKE CYTOPLASMIC KINASE 289	Receptor-like Cytoplasmic Kinase 289	RECEPTOR-LIKE CYTOPLASMIC KINASE 289		10	LOC_Os10g03990 (not found in MSU Rice Genome Annotation Project Release 7 data).							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18969	RLCK290	OsRLCK290	RECEPTOR-LIKE CYTOPLASMIC KINASE 290	Receptor-like Cytoplasmic Kinase 290	RECEPTOR-LIKE CYTOPLASMIC KINASE 290		10	LOC_Os10g05160	 Tolerance and resistance - Stress tolerance	Os10g0141200	LOC_Os10g05160.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
18970	RLCK294	OsRLCK294	RECEPTOR-LIKE CYTOPLASMIC KINASE 294	Receptor-like Cytoplasmic Kinase 294	RECEPTOR-LIKE CYTOPLASMIC KINASE 294		10	LOC_Os10g10870	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os10g0187500	LOC_Os10g10870.1				GO:0004672 - protein kinase activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18971	RLCK295	OsRLCK295	RECEPTOR-LIKE CYTOPLASMIC KINASE 295	Receptor-like Cytoplasmic Kinase 295	RECEPTOR-LIKE CYTOPLASMIC KINASE 295		10	LOC_Os10g12620		Os10g0200000	LOC_Os10g12620.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005198 - structural molecule activity		
18972	RLCK296	OsRLCK296	RECEPTOR-LIKE CYTOPLASMIC KINASE 296	Receptor-like Cytoplasmic Kinase 296	RECEPTOR-LIKE CYTOPLASMIC KINASE 296		10	LOC_Os10g18260			LOC_Os10g18260				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18973	RLCK297	OsRLCK297	RECEPTOR-LIKE CYTOPLASMIC KINASE 297	Receptor-like Cytoplasmic Kinase 297	RECEPTOR-LIKE CYTOPLASMIC KINASE 297		10	LOC_Os10g24850		Os10g0387400	LOC_Os10g24850.1						
18974	RLCK298	OsRLCK298	RECEPTOR-LIKE CYTOPLASMIC KINASE 298	Receptor-like Cytoplasmic Kinase 298	RECEPTOR-LIKE CYTOPLASMIC KINASE 298		10	LOC_Os10g25550	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os10g0395000	LOC_Os10g25550.1				GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18975	RLCK299	OsRLCK299	RECEPTOR-LIKE CYTOPLASMIC KINASE 299	Receptor-like Cytoplasmic Kinase 299	RECEPTOR-LIKE CYTOPLASMIC KINASE 299		10	LOC_Os10g26520	 Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os10g0405100	LOC_Os10g26520.1				GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009611 - response to wounding	TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18976	RLCK300	OsRLCK300	RECEPTOR-LIKE CYTOPLASMIC KINASE 300	Receptor-like Cytoplasmic Kinase 300	RECEPTOR-LIKE CYTOPLASMIC KINASE 300		10	LOC_Os10g29620	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0431900	LOC_Os10g29620.1				GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18977	RLCK301	OsRLCK301	RECEPTOR-LIKE CYTOPLASMIC KINASE 301	Receptor-like Cytoplasmic Kinase 301	RECEPTOR-LIKE CYTOPLASMIC KINASE 301		10	LOC_Os10g30600	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0442800	LOC_Os10g30600.2, LOC_Os10g30600.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0048316 - seed development	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18978	RLCK302	OsRLCK302	RECEPTOR-LIKE CYTOPLASMIC KINASE 302	Receptor-like Cytoplasmic Kinase 302	RECEPTOR-LIKE CYTOPLASMIC KINASE 302		10	LOC_Os10g34220		Os10g0483400	LOC_Os10g34220.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18979	RLCK303	OsRLCK303	RECEPTOR-LIKE CYTOPLASMIC KINASE 303	Receptor-like Cytoplasmic Kinase 303	RECEPTOR-LIKE CYTOPLASMIC KINASE 303		10	LOC_Os10g37190	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os10g0516200	LOC_Os10g37190.1				GO:0042742 - defense response to bacterium, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009611 - response to wounding	TO:0000175 - bacterial blight disease resistance	
18980	RLCK304	OsRLCK304, OsBSK1-2, BSK1-2	RECEPTOR-LIKE CYTOPLASMIC KINASE 304	Receptor-like Cytoplasmic Kinase 304, brassinosteroid-SIGNALING KINASE 1-2	RECEPTOR-LIKE CYTOPLASMIC KINASE 304		10	LOC_Os10g39670	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0542800	LOC_Os10g39670.1				GO:0009414 - response to water deprivation, GO:0002237 - response to molecule of bacterial origin, GO:0002238 - response to molecule of fungal origin, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18981	RLCK308	OsRLCK308, OsBSK2, BSK2	RECEPTOR-LIKE CYTOPLASMIC KINASE 308	Receptor-like Cytoplasmic Kinase 308, BR-signaling kinase 2, brassinosteroid-signaling kinase 2, brassinosteroid-SIGNALING KINASE 2	RECEPTOR-LIKE CYTOPLASMIC KINASE 308		10	LOC_Os10g42110. a rice ortholog of AtBSK.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0571300	LOC_Os10g42110.1				GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0009742 - brassinosteroid mediated signaling, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
18982	RLCK309	OsRLCK309	RECEPTOR-LIKE CYTOPLASMIC KINASE 309	Receptor-like Cytoplasmic Kinase 309	RECEPTOR-LIKE CYTOPLASMIC KINASE 309		11	LOC_Os11g02830		Os11g0121400	LOC_Os11g02830.2, LOC_Os11g02830.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18983	RLCK310	OsRLCK310	RECEPTOR-LIKE CYTOPLASMIC KINASE 310	Receptor-like Cytoplasmic Kinase 310	RECEPTOR-LIKE CYTOPLASMIC KINASE 310		11	LOC_Os11g03880		Os11g0133500	LOC_Os11g03880.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030246 - carbohydrate binding, GO:0048544 - recognition of pollen, GO:0005524 - ATP binding		
18984	RLCK311	OsRLCK311	RECEPTOR-LIKE CYTOPLASMIC KINASE 311	Receptor-like Cytoplasmic Kinase 311	RECEPTOR-LIKE CYTOPLASMIC KINASE 311		11	LOC_Os11g06780	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0168600	LOC_Os11g06780.1				GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18985	RLCK312	OsRLCK312	RECEPTOR-LIKE CYTOPLASMIC KINASE 312	Receptor-like Cytoplasmic Kinase 312	RECEPTOR-LIKE CYTOPLASMIC KINASE 312		11	LOC_Os11g07130	 Tolerance and resistance - Stress tolerance	Os11g0172350	LOC_Os11g07130.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18986	RLCK313	OsRLCK313	RECEPTOR-LIKE CYTOPLASMIC KINASE 313	Receptor-like Cytoplasmic Kinase 313	RECEPTOR-LIKE CYTOPLASMIC KINASE 313		11	LOC_Os11g07190			LOC_Os11g07190				GO:0016772 - transferase activity, transferring phosphorus-containing groups		
18987	RLCK314	OsRLCK314, 25L2	RECEPTOR-LIKE CYTOPLASMIC KINASE 314	Receptor-like Cytoplasmic Kinase 314, LOC_Os11g07225-like 2	RECEPTOR-LIKE CYTOPLASMIC KINASE 314	25L2-t, 25L2*	11	LOC_Os11g07240. 25L2 is the one of two leucine-rich repeat receptor-like kinase (LRR-RLK) genes in Hwi1 locus which induce hybrid weakness (Chen et al. 2014).	 Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os11g0173550	LOC_Os11g07240.1				GO:0048364 - root development, GO:0009408 - response to heat	TO:0000654 - shoot development trait, TO:0000207 - plant height, TO:0000392 - sterility or fertility trait, TO:0000084 - root number, TO:0000432 - temperature response trait	PO:0007520 - root development stage 
18988	RLCK315	OsRLCK315	RECEPTOR-LIKE CYTOPLASMIC KINASE 315	Receptor-like Cytoplasmic Kinase 315	RECEPTOR-LIKE CYTOPLASMIC KINASE 315		11	LOC_Os11g08950	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0194900	LOC_Os11g08950.1				GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
18989	RLCK317	OsRLCK317	RECEPTOR-LIKE CYTOPLASMIC KINASE 317	Receptor-like Cytoplasmic Kinase 317	RECEPTOR-LIKE CYTOPLASMIC KINASE 317		11	LOC_Os11g10690 (not found in MSU Rice Genome Annotation Project Release 7 data).							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18990	RLCK319	OsRLCK319, OsCRLK21, CRLK21	RECEPTOR-LIKE CYTOPLASMIC KINASE 319	Receptor-like Cytoplasmic Kinase 319	RECEPTOR-LIKE CYTOPLASMIC KINASE 319		11	LOC_Os11g11780. OsCRLK21 in Sengupta et al. 2018.	 Tolerance and resistance - Disease resistance	Os11g0225000	LOC_Os11g11780.1				GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005829 - cytosol	TO:0000074 - blast disease	
18991	RLCK320	OsRLCK320	RECEPTOR-LIKE CYTOPLASMIC KINASE 320	Receptor-like Cytoplasmic Kinase 320	RECEPTOR-LIKE CYTOPLASMIC KINASE 320		11	LOC_Os11g12620	 Reproductive organ - panicle	Os11g0233800	LOC_Os11g12620.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18992	RLCK321	OsRLCK321	RECEPTOR-LIKE CYTOPLASMIC KINASE 321	Receptor-like Cytoplasmic Kinase 321	RECEPTOR-LIKE CYTOPLASMIC KINASE 321		11	LOC_Os11g17380	 Tolerance and resistance - Stress tolerance	Os11g0274100/Os11g0274300					GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18993	RLCK322	OsRLCK322	RECEPTOR-LIKE CYTOPLASMIC KINASE 322	Receptor-like Cytoplasmic Kinase 322	RECEPTOR-LIKE CYTOPLASMIC KINASE 322		11	LOC_Os11g17440		Os11g0274700	LOC_Os11g17440.1				GO:0016772 - transferase activity, transferring phosphorus-containing groups		
18994	RLCK323	OsRLCK323	RECEPTOR-LIKE CYTOPLASMIC KINASE 323	Receptor-like Cytoplasmic Kinase 323	RECEPTOR-LIKE CYTOPLASMIC KINASE 323		11	LOC_Os11g18670			LOC_Os11g18670				GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0005524 - ATP binding		
18995	RLCK324	OsRLCK324	RECEPTOR-LIKE CYTOPLASMIC KINASE 324	Receptor-like Cytoplasmic Kinase 324	RECEPTOR-LIKE CYTOPLASMIC KINASE 324		11	LOC_Os11g18980		Os11g0294800/Os11g0294901					GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18996	RLCK325	OsRLCK325	RECEPTOR-LIKE CYTOPLASMIC KINASE 325	Receptor-like Cytoplasmic Kinase 325	RECEPTOR-LIKE CYTOPLASMIC KINASE 325		11	LOC_Os11g19490	 Tolerance and resistance - Stress tolerance	Os11g0300700	LOC_Os11g19490.1				GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18997	RLCK326	OsRLCK326	RECEPTOR-LIKE CYTOPLASMIC KINASE 326	Receptor-like Cytoplasmic Kinase 326	RECEPTOR-LIKE CYTOPLASMIC KINASE 326		11	LOC_Os11g25510		Os11g0441900	LOC_Os11g25510.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18998	RLCK327	OsRLCK327	RECEPTOR-LIKE CYTOPLASMIC KINASE 327	Receptor-like Cytoplasmic Kinase 327	RECEPTOR-LIKE CYTOPLASMIC KINASE 327		11	LOC_Os11g25860		Os11g0445300	LOC_Os11g25860.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
18999	RLCK328	OsRLCK328	RECEPTOR-LIKE CYTOPLASMIC KINASE 328	Receptor-like Cytoplasmic Kinase 328	RECEPTOR-LIKE CYTOPLASMIC KINASE 328		11	LOC_Os11g29510		Os11g0485700	LOC_Os11g29510.1						
19000	RLCK329	OsRLCK329	RECEPTOR-LIKE CYTOPLASMIC KINASE 329	Receptor-like Cytoplasmic Kinase 329	RECEPTOR-LIKE CYTOPLASMIC KINASE 329		11	LOC_Os11g34610		Os11g0549000	LOC_Os11g34610.1						
19001	RLCK331	OsRLCK331	RECEPTOR-LIKE CYTOPLASMIC KINASE 331	Receptor-like Cytoplasmic Kinase 331	RECEPTOR-LIKE CYTOPLASMIC KINASE 331		11	LOC_Os11g35100			LOC_Os11g35100				GO:0005524 - ATP binding		
19002	RLCK332	OsRLCK332	RECEPTOR-LIKE CYTOPLASMIC KINASE 332	Receptor-like Cytoplasmic Kinase 332	RECEPTOR-LIKE CYTOPLASMIC KINASE 332		11	LOC_Os11g35120		Os11g0553500	LOC_Os11g35120.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19003	RLCK333	OsRLCK333	RECEPTOR-LIKE CYTOPLASMIC KINASE 333	Receptor-like Cytoplasmic Kinase 333	RECEPTOR-LIKE CYTOPLASMIC KINASE 333		11	LOC_Os11g35260			LOC_Os11g35260				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19004	RLCK334	OsRLCK334	RECEPTOR-LIKE CYTOPLASMIC KINASE 334	Receptor-like Cytoplasmic Kinase 334	RECEPTOR-LIKE CYTOPLASMIC KINASE 334		11	LOC_Os11g35274	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os11g0556400	LOC_Os11g35274.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
19005	RLCK335	OsRLCK335	RECEPTOR-LIKE CYTOPLASMIC KINASE 335	Receptor-like Cytoplasmic Kinase 335	RECEPTOR-LIKE CYTOPLASMIC KINASE 335		11	LOC_Os11g35290		Os11g0556600	LOC_Os11g35290.1						
19006	RLCK336	OsRLCK336	RECEPTOR-LIKE CYTOPLASMIC KINASE 336	Receptor-like Cytoplasmic Kinase 336	RECEPTOR-LIKE CYTOPLASMIC KINASE 336		11	LOC_Os11g39420		Os11g0607900	LOC_Os11g39420.1						
19007	RLCK337	OsRLCK337	RECEPTOR-LIKE CYTOPLASMIC KINASE 337	Receptor-like Cytoplasmic Kinase 337	RECEPTOR-LIKE CYTOPLASMIC KINASE 337		11	LOC_Os11g39450		Os11g0608300	LOC_Os11g39450.1						
19008	RLCK338	OsRLCK338	RECEPTOR-LIKE CYTOPLASMIC KINASE 338	Receptor-like Cytoplasmic Kinase 338	RECEPTOR-LIKE CYTOPLASMIC KINASE 338		11	LOC_Os11g39490		Os11g0608700	LOC_Os11g39490.1						
19009	RLCK339	OsRLCK339	RECEPTOR-LIKE CYTOPLASMIC KINASE 339	Receptor-like Cytoplasmic Kinase 339	RECEPTOR-LIKE CYTOPLASMIC KINASE 339		11	LOC_Os11g39530		Os11g0609500	LOC_Os11g39530.1						
19010	RLCK340	OsRLCK340	RECEPTOR-LIKE CYTOPLASMIC KINASE 340	Receptor-like Cytoplasmic Kinase 340	RECEPTOR-LIKE CYTOPLASMIC KINASE 340		11	LOC_Os11g40380		Os11g0618400	LOC_Os11g40380.1						
19011	RLCK341	OsRLCK341	RECEPTOR-LIKE CYTOPLASMIC KINASE 341	Receptor-like Cytoplasmic Kinase 341	RECEPTOR-LIKE CYTOPLASMIC KINASE 341		11	LOC_Os11g40430		Os11g0618900	LOC_Os11g40430.1						
19012	RLCK342	OsRLCK342, OsSTA269	RECEPTOR-LIKE CYTOPLASMIC KINASE 342	Receptor-like Cytoplasmic Kinase 342	RECEPTOR-LIKE CYTOPLASMIC KINASE 342		11	LOC_Os11g42440. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0644000	LOC_Os11g42440.1						PO:0009066 - anther 
19013	RLCK343	OsRLCK343	RECEPTOR-LIKE CYTOPLASMIC KINASE 343	Receptor-like Cytoplasmic Kinase 343	RECEPTOR-LIKE CYTOPLASMIC KINASE 343		11	LOC_Os11g44250		Os11g0664000	LOC_Os11g44250.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19014	RLCK344	OsRLCK344	RECEPTOR-LIKE CYTOPLASMIC KINASE 344	Receptor-like Cytoplasmic Kinase 344	RECEPTOR-LIKE CYTOPLASMIC KINASE 344		11	LOC_Os11g44260		Os11g0664100/Os11g0664133							
19015	RLCK345	OsRLCK345	RECEPTOR-LIKE CYTOPLASMIC KINASE 345	Receptor-like Cytoplasmic Kinase 345	RECEPTOR-LIKE CYTOPLASMIC KINASE 345		11	LOC_Os11g44430		Os11g0666200	LOC_Os11g44430.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19016	RLCK346	OsRLCK346	RECEPTOR-LIKE CYTOPLASMIC KINASE 346	Receptor-like Cytoplasmic Kinase 346	RECEPTOR-LIKE CYTOPLASMIC KINASE 346		11	LOC_Os11g44500		Os11g0667000	LOC_Os11g44500.1						
19017	RLCK347	OsRLCK347	RECEPTOR-LIKE CYTOPLASMIC KINASE 347	Receptor-like Cytoplasmic Kinase 347	RECEPTOR-LIKE CYTOPLASMIC KINASE 347		11	LOC_Os11g44550		Os11g0667500/Os11g0667550							
19018	RLCK348	OsRLCK348	RECEPTOR-LIKE CYTOPLASMIC KINASE 348	Receptor-like Cytoplasmic Kinase 348	RECEPTOR-LIKE CYTOPLASMIC KINASE 348		11	LOC_Os11g44560	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os11g0667600/Os11g0667700					GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0048316 - seed development	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
19019	RLCK349	OsRLCK349	RECEPTOR-LIKE CYTOPLASMIC KINASE 349	Receptor-like Cytoplasmic Kinase 349	RECEPTOR-LIKE CYTOPLASMIC KINASE 349		11	LOC_Os11g44660		Os11g0668800	LOC_Os11g44660.1						
19020	RLCK350	OsRLCK350	RECEPTOR-LIKE CYTOPLASMIC KINASE 350	Receptor-like Cytoplasmic Kinase 350	RECEPTOR-LIKE CYTOPLASMIC KINASE 350		11	LOC_Os11g44690		Os11g0669200	LOC_Os11g44690.1						
19021	RLCK351	OsRLCK351	RECEPTOR-LIKE CYTOPLASMIC KINASE 351	Receptor-like Cytoplasmic Kinase 351	RECEPTOR-LIKE CYTOPLASMIC KINASE 351		11	LOC_Os11g44860		Os11g0671950/Os11g0672200							
19022	RLCK352	OsRLCK352	RECEPTOR-LIKE CYTOPLASMIC KINASE 352	Receptor-like Cytoplasmic Kinase 352	RECEPTOR-LIKE CYTOPLASMIC KINASE 352		11	LOC_Os11g45540	 Tolerance and resistance - Disease resistance	Os11g0681400	LOC_Os11g45540.1				GO:0050832 - defense response to fungus, GO:0008270 - zinc ion binding	TO:0000074 - blast disease	
19023	RLCK353	OsRLCK353	RECEPTOR-LIKE CYTOPLASMIC KINASE 353	Receptor-like Cytoplasmic Kinase 353	RECEPTOR-LIKE CYTOPLASMIC KINASE 353		11	LOC_Os11g46870		Os11g0691280	LOC_Os11g46870.1						
19024	RLCK354	OsRLCK354	RECEPTOR-LIKE CYTOPLASMIC KINASE 354	Receptor-like Cytoplasmic Kinase 354	RECEPTOR-LIKE CYTOPLASMIC KINASE 354		11	LOC_Os11g46960		Os11g0691800	LOC_Os11g46960.1				GO:0004672 - protein kinase activity		
19025	RLCK355	OsRLCK355	RECEPTOR-LIKE CYTOPLASMIC KINASE 355	Receptor-like Cytoplasmic Kinase 355	RECEPTOR-LIKE CYTOPLASMIC KINASE 355		11	LOC_Os11g47000			LOC_Os11g47000				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19026	RLCK356	OsRLCK356	RECEPTOR-LIKE CYTOPLASMIC KINASE 356	Receptor-like Cytoplasmic Kinase 356	RECEPTOR-LIKE CYTOPLASMIC KINASE 356		11	LOC_Os11g47170			LOC_Os11g47170				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19027	RLCK357	OsRLCK357	RECEPTOR-LIKE CYTOPLASMIC KINASE 357	Receptor-like Cytoplasmic Kinase 357	RECEPTOR-LIKE CYTOPLASMIC KINASE 357		11	LOC_Os11g47490			LOC_Os11g47490				GO:0005524 - ATP binding		
19028	RLCK358	OsRLCK358	RECEPTOR-LIKE CYTOPLASMIC KINASE 358	Receptor-like Cytoplasmic Kinase 358	RECEPTOR-LIKE CYTOPLASMIC KINASE 358		12	LOC_Os12g01910		Os12g0109800/Os12g0109850					GO:0004672 - protein kinase activity		
19029	RLCK359	OsRLCK359	RECEPTOR-LIKE CYTOPLASMIC KINASE 359	Receptor-like Cytoplasmic Kinase 359	RECEPTOR-LIKE CYTOPLASMIC KINASE 359		12	LOC_Os12g02810		Os12g0121100	LOC_Os12g02810.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19030	RLCK360	OsRLCK360	RECEPTOR-LIKE CYTOPLASMIC KINASE 360	Receptor-like Cytoplasmic Kinase 360	RECEPTOR-LIKE CYTOPLASMIC KINASE 360		12	LOC_Os12g03690		Os12g0130800	LOC_Os12g03690.1						
19031	RLCK361	OsRLCK361	RECEPTOR-LIKE CYTOPLASMIC KINASE 361	Receptor-like Cytoplasmic Kinase 361	RECEPTOR-LIKE CYTOPLASMIC KINASE 361		12	LOC_Os12g07990		Os12g0180500	LOC_Os12g07990.1						
19032	RLCK362	OsRLCK362	RECEPTOR-LIKE CYTOPLASMIC KINASE 362	Receptor-like Cytoplasmic Kinase 362	RECEPTOR-LIKE CYTOPLASMIC KINASE 362		12	LOC_Os12g08050		Os12g0181200	LOC_Os12g08060.1, LOC_Os12g08050.1						
19033	RLCK363	OsRLCK363	RECEPTOR-LIKE CYTOPLASMIC KINASE 363	Receptor-like Cytoplasmic Kinase 363	RECEPTOR-LIKE CYTOPLASMIC KINASE 363		12	LOC_Os12g13310 (not found in MSU Rice Genome Annotation Project Release 7 data).							GO:0005524 - ATP binding		
19034	RLCK364	OsRLCK364	RECEPTOR-LIKE CYTOPLASMIC KINASE 364	Receptor-like Cytoplasmic Kinase 364	RECEPTOR-LIKE CYTOPLASMIC KINASE 364		12	LOC_Os12g14480			LOC_Os12g14480				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19035	RLCK365	OsRLCK365	RECEPTOR-LIKE CYTOPLASMIC KINASE 365	Receptor-like Cytoplasmic Kinase 365	RECEPTOR-LIKE CYTOPLASMIC KINASE 365		12	LOC_Os12g14610		Os12g0249300	LOC_Os12g14610.1						
19036	RLCK366	OsRLCK366	RECEPTOR-LIKE CYTOPLASMIC KINASE 366	Receptor-like Cytoplasmic Kinase 366	RECEPTOR-LIKE CYTOPLASMIC KINASE 366		12	LOC_Os12g14699		Os12g0249900	LOC_Os12g14699.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19037	RLCK367	OsRLCK367	RECEPTOR-LIKE CYTOPLASMIC KINASE 367	Receptor-like Cytoplasmic Kinase 367	RECEPTOR-LIKE CYTOPLASMIC KINASE 367		12	LOC_Os12g16520			LOC_Os12g16520				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19038	RLCK368	OsRLCK368, OsWAK, OsWAK125, WAK125	RECEPTOR-LIKE CYTOPLASMIC KINASE 368	Receptor-like Cytoplasmic Kinase 368, OsWAK receptor-like protein OsWAK-RLP	RECEPTOR-LIKE CYTOPLASMIC KINASE 368		12	LOC_Os12g29434. LOC_Os12g29430. GO:0080181: lateral root branching.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os12g0478400	LOC_Os12g29434.1, LOC_Os12g29430.1				GO:0030247 - polysaccharide binding, GO:0009414 - response to water deprivation	TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance	
19039	RLCK369	OsRLCK369	RECEPTOR-LIKE CYTOPLASMIC KINASE 369	Receptor-like Cytoplasmic Kinase 369	RECEPTOR-LIKE CYTOPLASMIC KINASE 369		12	LOC_Os12g30180		Os12g0486900	LOC_Os12g30180.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19040	RLCK370	OsRLCK370	RECEPTOR-LIKE CYTOPLASMIC KINASE 370	Receptor-like Cytoplasmic Kinase 370	RECEPTOR-LIKE CYTOPLASMIC KINASE 370		12	LOC_Os12g31560		Os12g0499700	LOC_Os12g31560.1						
19041	RLCK371	OsRLCK371	RECEPTOR-LIKE CYTOPLASMIC KINASE 371	Receptor-like Cytoplasmic Kinase 371	RECEPTOR-LIKE CYTOPLASMIC KINASE 371		12	LOC_Os12g31610		Os12g0500400	LOC_Os12g31610.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
19042	RLCK372	OsRLCK372	RECEPTOR-LIKE CYTOPLASMIC KINASE 372	Receptor-like Cytoplasmic Kinase 372	RECEPTOR-LIKE CYTOPLASMIC KINASE 372		12	LOC_Os12g33600		Os12g0519850	LOC_Os12g33600.1						
19043	RLCK373	OsRLCK373	RECEPTOR-LIKE CYTOPLASMIC KINASE 373	Receptor-like Cytoplasmic Kinase 373	RECEPTOR-LIKE CYTOPLASMIC KINASE 373		12	LOC_Os12g41710	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0611100	LOC_Os12g41710.4, LOC_Os12g41710.3, LOC_Os12g41710.2, LOC_Os12g41710.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
19044	RLCK374	OsRLCK374	RECEPTOR-LIKE CYTOPLASMIC KINASE 374	Receptor-like Cytoplasmic Kinase 374	RECEPTOR-LIKE CYTOPLASMIC KINASE 374		12	LOC_Os12g42040		Os12g0614800/Os12g0614851					GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19045	RLCK376	OsRLCK376	RECEPTOR-LIKE CYTOPLASMIC KINASE 376	Receptor-like Cytoplasmic Kinase 376	RECEPTOR-LIKE CYTOPLASMIC KINASE 376												
19046	RLCK378	OsRLCK378	RECEPTOR-LIKE CYTOPLASMIC KINASE 378	Receptor-like Cytoplasmic Kinase 378	RECEPTOR-LIKE CYTOPLASMIC KINASE 378		12	LOC_Os10g07548		Os10g0162836 	LOC_Os10g07548.1						
19047	RLCK379	OsRLCK379	RECEPTOR-LIKE CYTOPLASMIC KINASE 379	Receptor-like Cytoplasmic Kinase 379	RECEPTOR-LIKE CYTOPLASMIC KINASE 379		12	LOC_Os04g53996		Os04g0632300 	LOC_Os04g53996.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen		
19048	CYP35	OsCYP35	CYCLOPHILIN 35	cyclophilin 35	CYCLOPHILIN 35		3	LOC_Os03g01090.	 Biochemical character	Os03g0100300 	LOC_Os03g01090.1				GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
19049	CYP124	OsCYP124	CYCLOPHILIN 124	cyclophilin 124	CYCLOPHILIN 124		10	LOC_Os10g06640.	 Biochemical character	Os10g0154900 	LOC_Os10g06640.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding		
19050	_	OsGR1, GR1	_	glutathione reductase 1			10	chloroplastic isogene. Os10g0415112 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0016668 - oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor, GO:0050660 - FAD binding, GO:0045454 - cell redox homeostasis		
19051	_	OsMDAR1, OsMDHAR1	_	monodehydroascorbate reductase 1			2	cytosolic isoform.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0707000 	LOC_Os02g47790.1				GO:0045454 - cell redox homeostasis, GO:0050660 - FAD binding		
19052	_	OsMDAR2, OsMDHAR2, MDAR2, MDHAR2, OsMDHAR4, MDHAR4	_	monodehydroascorbate reductase 2, Monodehydroascorbate reductase 4		osmdhar4	2	cytosolic isoform. OsMDHAR4 in Liu et al. 2018. GO:0090333: regulation of stomatal closure. TO:0020097: stomatal opening.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0707100 	LOC_Os02g47800.1				GO:0009507 - chloroplast, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0050660 - FAD binding, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content	PO:0025034 - leaf 
19053	_	OsMDAR5, OsMDHAR5	_	monodehydroascorbate reductase 5			8	chloroplastic isoform.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0151800 	LOC_Os08g05570.4, LOC_Os08g05570.3				GO:0005524 - ATP binding, GO:0050660 - FAD binding, GO:0042744 - hydrogen peroxide catabolic process, GO:0016656 - monodehydroascorbate reductase (NADH) activity, GO:0009570 - chloroplast stroma, GO:0010319 - stromule, GO:0005739 - mitochondrion		
19054	_	ESL	_	early senescence leaf, early-senescence-leaf		esl			 Tolerance and resistance - Stress tolerance						GO:0042743 - hydrogen peroxide metabolic process, GO:0010150 - leaf senescence, GO:0033355 - ascorbate glutathione cycle	TO:0000207 - plant height, TO:0000449 - grain yield per plant, TO:0000592 - 1000-dehulled grain weight, TO:0000040 - panicle length, TO:0000152 - panicle number, TO:0000326 - leaf color, TO:0000180 - spikelet fertility, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence	
19055	_	OsPRX1, POX1	_	Peroxidase 1				U95217.	 Biochemical character						GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
19056	SKIN1	OsSKIN1, OsO3L8, O3L8	SNRK1A-INTERACTING NEGATIVE REGULATOR 1	SnRK1A-interacting negative regulator 1, OXIDATIVE STRESS 3-like 8, OXS3-like 8	SNRK1A-INTERACTING NEGATIVE REGULATOR 1		9	LOC_Os09g32330. rice OXS3 homolog. candidate gene for qSSR9-2.	 Tolerance and resistance - Stress tolerance	Os09g0499000	LOC_Os09g32330.1				GO:0009737 - response to abscisic acid stimulus, GO:0009628 - response to abiotic stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait	
19057	SKIN2	OsSKIN2, OsO3L9, O3L9	SNRK1A-INTERACTING NEGATIVE REGULATOR 2	SnRK1A-interacting negative regulator 2, OXIDATIVE STRESS 3-like 9, OXS3-like 9	SNRK1A-INTERACTING NEGATIVE REGULATOR 2		8	rice OXS3 homolog.	 Tolerance and resistance - Stress tolerance	Os08g0516900	LOC_Os08g40510.1				GO:0009737 - response to abscisic acid stimulus, GO:0009628 - response to abiotic stimulus, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000276 - drought tolerance	
19059	_	Pita3(t)	_	Pyricularia oryzae resistance, Magnaporthe grisea resistance ta3, Blast resistance ta23			12	IRBLta2-Re has an additional resistance gene other than Pita, which was tentatively designated Pita3(t) (supposed to be Pita2). The resistance gene, Pita3(t), was assumed to be in an interval of approximately 178 kb which containing a total of 5 NBS-LRR genes and was about 500 kb away from the Pita gene.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
19060	GRAS17	OsSCL14, SCL14, OsGRAS-17, OsGRAS17, GRAS-17	GRAS PROTEIN 17	GRAS protein 17	GRAS PROTEIN 17		3	DELLA protein subfamily gene.	 Other	Os03g0690600	LOC_Os03g48450.4, LOC_Os03g48450.3, LOC_Os03g48450.2, LOC_Os03g48450.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
19061	GRAS19	OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19	GRAS PROTEIN 19	SCARECROW-LIKE7, SCARECROW-LIKE 7, GRAS protein 19	GRAS PROTEIN 19		3	DELLA protein subfamily gene. LOC_Os03g51330. RCSB Protein Data Bank entry 5HYZ.	 Other	Os03g0723000	LOC_Os03g51330.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
19062	_	OsPEAMT1	_	Phosphoethanolamine N-Methyltransferase 1			1	LOC_Os01g50030.	 Biochemical character	Os01g0695100	LOC_Os01g50032.1, LOC_Os01g50030.1				GO:0042425 - choline biosynthetic process, GO:0006656 - phosphatidylcholine biosynthetic process, GO:0000234 - phosphoethanolamine N-methyltransferase activity		
19063	_	OsPEAMT2	_	Phosphoethanolamine N-Methyltransferase 2			5	LOC_Os05g47540.	 Biochemical character	Os05g0548900	LOC_Os05g47545.1, LOC_Os05g47540.5, LOC_Os05g47540.4, LOC_Os05g47540.3, LOC_Os05g47540.2, LOC_Os05g47540.1				GO:0042425 - choline biosynthetic process		
19064	_		_	NADH dehydrogenase 1 a subcomplex subunit 5			3	LOC_Os03g19890. GO:0090351: seedling development.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits - Endosperm	Os03g0313000	LOC_Os03g19890.1				GO:0009740 - gibberellic acid mediated signaling, GO:0005743 - mitochondrial inner membrane, GO:0005982 - starch metabolic process, GO:0006754 - ATP biosynthetic process, GO:0009960 - endosperm development, GO:0016651 - oxidoreductase activity, acting on NADH or NADPH, GO:0022904 - respiratory electron transport chain	TO:0000207 - plant height, TO:0000486 - seed color	PO:0007131 - seedling development stage , PO:0007633 - endosperm development stage 
19066	PIP2;9	OsPIP2;9, PIP2.9, PIP2-9	PLASMA MEMBRANE INTRINSIC PROTEIN 2;9	Probable aquaporin PIP2.9, Probable aquaporin PIP2-9, Plasma membrane intrinsic protein 2-9	PLASMA MEMBRANE INTRINSIC PROTEIN 2;9		7	LOC_Os07g26640.	 Biochemical character	Os07g0448200	LOC_Os07g26640.1				GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
19067	PIP2;10	OsPIP2;10, PIP2.10, PIP2-10	PLASMA MEMBRANE INTRINSIC PROTEIN 2;10	Probable aquaporin PIP2.10, Probable aquaporin PIP2-10, Plasma membrane intrinsic protein 2-10	PLASMA MEMBRANE INTRINSIC PROTEIN 2;10		10	LOC_Os10g34000.	 Biochemical character	Os10g0481100	LOC_Os10g34000.1				GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
19068	NIP1;5	OsNIP1;5, NIP1-5	NOD26 LIKE INTRINSIC PROTEIN 1;5	Aquaporin NIP1-5, NOD26-like intrinsic protein 1-5	NOD26 LIKE INTRINSIC PROTEIN 1;5		1	LOC_Os01g10530.	 Biochemical character	Os01g0201900	LOC_Os01g10530.3, LOC_Os01g10530.2, LOC_Os01g10530.1						
19069	NIP3;4	OsNIP3;4, NIP3-4	NOD26 LIKE INTRINSIC PROTEIN 3;4	Aquaporin NIP3-4, NOD26-like intrinsic protein 3-4	NOD26 LIKE INTRINSIC PROTEIN 3;4		8	LOC_Os08g05580.	 Biochemical character	Os08g0151900	LOC_Os08g05580.1				GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
19070	NIP3;5	OsNIP3;5, NIP3-5	NOD26 LIKE INTRINSIC PROTEIN 3;5	Aquaporin NIP3-5, NOD26-like intrinsic protein 3-5	NOD26 LIKE INTRINSIC PROTEIN 3;5		12	LOC_Os12g10280.	 Biochemical character	Os12g0204100	LOC_Os12g10280.1				GO:0005215 - transporter activity, GO:0016020 - membrane		
19072	_	HDA704	_	histone deacetylase 704			7	LOC_Os07g06980.	 Biochemical character,  Vegetative organ - Culm	Os07g0164100	LOC_Os07g06980.2, LOC_Os07g06980.1				GO:0048573 - photoperiodism, flowering, GO:0009294 - DNA mediated transformation, GO:0016787 - hydrolase activity	TO:0000207 - plant height	
19073	_	PEZ1, OsPEZ1	_	phenolics efflux zero 1		pez1-1, pez1-2	3	TO:0006059: cadmium concentration. Phenolics efflux transporter.	 Biochemical character	Os03g0571900	LOC_Os03g37490.1				GO:0034755 - iron ion transmembrane transport, GO:0005886 - plasma membrane, GO:0015297 - antiporter activity, GO:0015238 - drug transporter activity, GO:0016020 - membrane, GO:0015691 - cadmium ion transport		
19074	_	PEZ2	_	phenolics efflux zero 2, phenolics efflux transporter 2		pez2	3	TO:0006059: cadmium concentration.	 Biochemical character	Os03g0572900	LOC_Os03g37640.2, LOC_Os03g37640.1				GO:0015238 - drug transporter activity, GO:0034755 - iron ion transmembrane transport, GO:0016021 - integral to membrane, GO:0015691 - cadmium ion transport, GO:0015297 - antiporter activity		
19075	_		_	PR2/Beta-1, 3-glucanase			1	pathogenesis-related (PR) gene. LOC_Os01g71400. Os01g0941400 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance		LOC_Os01g71400				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
19076	_		_	PR2/Beta-1, 3-glucanase			1	pathogenesis-related (PR) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0944500 	LOC_Os01g71650.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
19077	_		_	PR2/Beta-1, 3-glucanase			3	pathogenesis-related (PR) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0600600 	LOC_Os03g40330.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
19078	_		_	PR2/Beta-1, 3-glucanase, Glycosyl hydrolase 17 family protein			7	pathogenesis-related (PR) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0539900 	LOC_Os07g35560.3, LOC_Os07g35560.2, LOC_Os07g35560.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19079	_		_	PR5/thaumatin			12	pathogenesis-related (PR) gene.	 Tolerance and resistance - Disease resistance	Os12g0629700 							
19080	_		_	Leucine-rich repeat receptor-like kinase			1		 Tolerance and resistance - Disease resistance	Os01g0132100 	LOC_Os01g04070.1						
19081	_		_	Leucine-rich repeat receptor-like kinase			2		 Tolerance and resistance - Disease resistance	Os02g0609900 	LOC_Os02g39660.1						
19082	_		_	Leucine-rich repeat receptor-like kinase			11		 Tolerance and resistance - Disease resistance	Os11g0625900 	LOC_Os11g40970.1				GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19083	_		_	Cysteine-rich receptor-like kinase			7		 Tolerance and resistance - Disease resistance	Os07g0538200 	LOC_Os07g35370.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19084	_	RIR1b, Rir1b, OsRALF-30, OsRALF30, RALF-30, RALF30	_	Defense-related gene/RIR1b, Rapid alkalization factor 30			10	LOC_Os10g42020.	 Tolerance and resistance - Disease resistance	Os10g0569800 	LOC_Os10g42020.3, LOC_Os10g42020.2, LOC_Os10g42020.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19085	_	DRR206	_	Disease-resistance response gene/DRR206			1		 Tolerance and resistance - Disease resistance	Os01g0879200 	LOC_Os01g65700.1						
19086	_	H1, OsH1	_	G1/S-phase gene H1			4	LOC_Os04g18090.		Os04g0253000	LOC_Os04g18090.1				GO:0000786 - nucleosome, GO:0006334 - nucleosome assembly, GO:0003677 - DNA binding, GO:0005634 - nucleus		
19087	_	CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1	_	G1/S-phase gene CAK1, CDK-activating kinase assembly factor, MENAGE A TROIS 1, MAT1 assembly factor			6	LOC_Os06g07480. a putative meiosis-related gene. CDK-activating kinase complex.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os06g0171700	LOC_Os06g07480.1				GO:0007126 - meiosis, GO:0006281 - DNA repair, GO:0005634 - nucleus, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005675 - holo TFIIH complex		
19088	_	MAD2, OsMAD2	_	cell expansion-related gene MAD2			4	LOC_Os04g40940.		Os04g0486500	LOC_Os04g40940.2, LOC_Os04g40940.1				GO:0005828 - kinetochore microtubule, GO:0005737 - cytoplasm, GO:0000777 - condensed chromosome kinetochore, GO:0010369 - chromocenter, GO:0051788 - response to misfolded protein, GO:0051510 - regulation of unidimensional cell growth, GO:0007094 - mitotic cell cycle spindle assembly checkpoint, GO:0043248 - proteasome assembly, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0042023 - DNA endoreduplication, GO:0016572 - histone phosphorylation, GO:0007067 - mitosis, GO:0005635 - nuclear envelope, GO:0051301 - cell division, GO:0008283 - cell proliferation		
19089	_	MAPK	_				9	cell expansion-related gene MAPK. LOC_Os09g21510.		Os09g0383300	LOC_Os09g21510.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19090	_		_	glycosyl hydrolases family 38 protein			11	LOC_Os11g32260.	 Biochemical character,  Seed - Physiological traits - Dormancy	Os11g0525600	LOC_Os11g32260.2, LOC_Os11g32260.1				GO:0006013 - mannose metabolic process, GO:0008270 - zinc ion binding, GO:0004559 - alpha-mannosidase activity, GO:0009266 - response to temperature stimulus, GO:0009845 - seed germination, GO:0009737 - response to abscisic acid stimulus	TO:0000432 - temperature response trait, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
19091	CPA1	OsCPA1	CARBAMOYLPUTRESCINE AMIDASE 1	N-carbamoylputrescine amidase, N-carbamoyl-Put amidohydrolase 1	CARBAMOYLPUTRESCINE AMIDASE 1		2	Q93XI4. LOC_Os02g33080.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os02g0533900	LOC_Os02g33080.2, LOC_Os02g33080.1				GO:0009266 - response to temperature stimulus, GO:0050126 - N-carbamoylputrescine amidase activity, GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0033388 - putrescine biosynthetic process from arginine, GO:0009845 - seed germination	TO:0000432 - temperature response trait, TO:0006001 - salt tolerance	PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
19092	_	PFT1, OsMED25_1, MED25_1	_	PHYTOCHROME AND FLOWERING TIME 1, Mediator 25_1			9	LOC_Os09g13610.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0306700	LOC_Os09g13610.3, LOC_Os09g13610.1				GO:0010076 - maintenance of floral meristem identity, GO:0009908 - flower development	TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000396 - grain yield	PO:0007615 - flower development stage 
19093	_	PEP	_	PEPPER			10	LOC_Os10g27470.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0414700	LOC_Os10g27470.1				GO:0003723 - RNA binding, GO:0009908 - flower development		PO:0007615 - flower development stage 
19094	_	PG	_	POLYGALACTURONASE			1	LOC_Os01g07790.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0172900	LOC_Os01g07790.1				GO:0009555 - pollen development, GO:0009908 - flower development		PO:0007615 - flower development stage 
19095	_	MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96	_	"\"MODIFIER OF SNC1, 3/SUPPRESSOR OF AUXIN RESISTANCE 3\", \"MODIFIER OF SNC1, 3\", SUPPRESSOR OF AUXIN RESISTANCE 3, Nucleoporin Autopeptidase 1, nucleoporin 96"			3	LOC_Os03g07580. Nucleoporin Autopeptidase Family (Peptidase_S59; PF04096). http://rice.plantbiology.msu.edu/ca/gene_fams/27_85.shtml	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0172000	LOC_Os03g07580.1				GO:0015288 - porin activity, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0010074 - maintenance of meristem identity, GO:0005643 - nuclear pore, GO:0009909 - regulation of flower development, GO:0006406 - mRNA export from nucleus, GO:0009908 - flower development, GO:0009870 - defense response signaling pathway, resistance gene-dependent, GO:0009733 - response to auxin stimulus, GO:0009086 - methionine biosynthetic process, GO:0006606 - protein import into nucleus, GO:0031965 - nuclear membrane		PO:0007615 - flower development stage 
19096	_	TAF6	_	TATA BOX BINDING PROTEIN-ASSOCIATED FACTOR 6			1	LOC_Os01g32750.	 Reproductive organ - Pollination, fertilization, fertility	Os01g0510800	LOC_Os01g32750.1				GO:0005634 - nucleus, GO:0009856 - pollination, GO:0051090 - regulation of transcription factor activity, GO:0009860 - pollen tube growth, GO:0006352 - transcription initiation		
19097	_	SEC5	_	EXOCYST COMPLEX COMPONENT SEC5			4	LOC_Os04g34450.	 Reproductive organ - Pollination, fertilization, fertility	Os04g0421900	LOC_Os04g34450.1				GO:0000145 - exocyst, GO:0006893 - Golgi to plasma membrane transport, GO:0009856 - pollination, GO:0009860 - pollen tube growth		
19098	_	LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35	_	LATE ELONGATED HYPOCOTYL, MYB-related transcription factor 1			4	LOC_Os04g49450. a rice ortholog of Arabidopsis gene for circadian clock component. OsMYB1R35 in Li et al. 2017.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os04g0583900	LOC_Os04g49450.2, LOC_Os04g49450.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009648 - photoperiodism, GO:0009908 - flower development, GO:0007623 - circadian rhythm	TO:0006002 - proline content, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000340 - total soluble sugar content	PO:0007615 - flower development stage 
19099	_	PR1b	_	pathogenesis-related protein			7		 Tolerance and resistance - Disease resistance	Os07g0127700 	LOC_Os07g03600.1				GO:0005576 - extracellular region, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19100	_		_	basic secretory protein			10		 Tolerance and resistance - Disease resistance	Os10g0491000 	LOC_Os10g34930.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19101	GLP4-1	OsGLP4-1	GERMIN-LIKE PROTEIN 4-1	Germin-like protein 4-1	GERMIN-LIKE PROTEIN 4-1		4	Q7XSN6.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0617900	LOC_Os04g52720.1				GO:0030145 - manganese ion binding, GO:0048046 - apoplast, GO:0002242 - defense response to parasitic plant, GO:0005618 - cell wall, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000444 - parasitic weed	
19102	_		_	Alpha-L-arabinofuranosidase C-terminus family protein			12	LOC_Os12g03470.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0128700	LOC_Os12g03470.5, LOC_Os12g03470.4, LOC_Os12g03470.3, LOC_Os12g03470.2, LOC_Os12g03470.1				GO:0046556 - alpha-N-arabinofuranosidase activity, GO:0046373 - L-arabinose metabolic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19103	_		_	glucan-1, 3-beta-glucosidase			10	LOC_Os10g22520.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0370500 	LOC_Os10g22520.1				GO:0046688 - response to copper ion, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0007015 - actin filament organization, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000021 - copper sensitivity	
19104	_		_	endo-1, 3-beta-glucanase			1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0947000 	LOC_Os01g71860.1				GO:0005975 - carbohydrate metabolic process, GO:0050832 - defense response to fungus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000074 - blast disease	
19105	ALPHACA3	OsalphaCA3, alphaCA3	ALPHA-CARBONIC ANHYDRASE 3	dioscorin, alpha-carbonic anhydrase 3	ALPHA-CARBONIC ANHYDRASE 3		8	LOC_Os08g32750.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0423500 	LOC_Os08g32750.1				GO:0050832 - defense response to fungus, GO:0006730 - one-carbon metabolic process, GO:0004089 - carbonate dehydratase activity	TO:0000074 - blast disease	
19106	_		_	(Hypothetical protein)			5		 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0272800 	LOC_Os05g19030.2, LOC_Os05g19030.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19107	_	OsSub30, SUB30	_	subtilisin-like proteinase, Subtilisin 30, SUBTILISIN 30			3	LOC_Os03g40830. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0605300 	LOC_Os03g40830.1				GO:0005618 - cell wall, GO:0050832 - defense response to fungus, GO:0004252 - serine-type endopeptidase activity	TO:0000074 - blast disease	
19108	_		_	Glycosyl hydrolase 3 family protein			4		 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0640700 	LOC_Os04g54810.1				GO:0050832 - defense response to fungus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process	TO:0000074 - blast disease	
19109	_		_	Subtilisin-like protease			9		 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0482660 	LOC_Os09g30458.1				GO:0004252 - serine-type endopeptidase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19110	_	alphaGa1, alpha-Gal I	_	Alpha-D-galactoside galactohydrolase, alpha-galactosidase 1, alpha-galactosidase I			10	Q9FXT4. GO:0052692: raffinose alpha-galactosidase activity. AB039671.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0493600	LOC_Os10g35110.3, LOC_Os10g35110.2, LOC_Os10g35110.1				GO:0000023 - maltose metabolic process, GO:0019252 - starch biosynthetic process, GO:0043085 - positive regulation of catalytic activity, GO:0009911 - positive regulation of flower development, GO:0050832 - defense response to fungus, GO:0009505 - plant-type cell wall, GO:0007020 - microtubule nucleation, GO:0009965 - leaf morphogenesis	TO:0000074 - blast disease	
19111	_		_	Dehydration stress-induced protein			10		 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0361000 	LOC_Os10g21670.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19112	_		_	Membrane-binding protein			4		 Tolerance and resistance - Disease resistance	Os04g0322100 	LOC_Os04g25650.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19113	_		_	Membrane-binding protein			4		 Tolerance and resistance - Disease resistance	Os04g0316200	LOC_Os04g25060.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19120	_	OsRHP1	_	RING-H2 finger protein 1			8		 Tolerance and resistance - Stress tolerance	Os08g0492500 	LOC_Os08g38460.1				GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding	TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
19121	XA39	Xa39	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 39	Xanthomonas oryzae pv. oryzae resistance 39			11	LOC_Os11g37759(Os11g0588600) is a Xa39 candidate gene. The study in Zhang et al.(2015) provides the comprehensive transcriptome profile of a rice introgression line carrying Xa39 and its parents, and identifies a set of DEGs involved in BSHR mediated by Xa39.	 Tolerance and resistance - Disease resistance	Os11g0588600	LOC_Os11g37759.3, LOC_Os11g37759.2, LOC_Os11g37759.1				GO:0042742 - defense response to bacterium		
19123	_	OsRH17	_	RNA helicase 17			5	Q0DLB9. DEAD-box RNA helicase protein.		Os05g0110500	LOC_Os05g01990.2, LOC_Os05g01990.1				GO:0009737 - response to abscisic acid stimulus, GO:0051604 - protein maturation, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0008026 - ATP-dependent helicase activity, GO:0006626 - protein targeting to mitochondrion, GO:0006406 - mRNA export from nucleus, GO:0010388 - cullin deneddylation, GO:0006312 - mitotic recombination, GO:0009560 - embryo sac egg cell differentiation, GO:0009640 - photomorphogenesis, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0042991 - transcription factor import into nucleus	TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000401 - plant growth hormone sensitivity	PO:0025281 - pollen 
19124	_	OsRH1	_	RNA helicase 1			2	Q0DWT8. LOC_Os02g55260. DEAD-box RNA helicase protein.		Os02g0795900	LOC_Os02g55260.2, LOC_Os02g55260.1				GO:0009560 - embryo sac egg cell differentiation, GO:0009640 - photomorphogenesis, GO:0010388 - cullin deneddylation, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0006406 - mRNA export from nucleus, GO:0006606 - protein import into nucleus, GO:0006626 - protein targeting to mitochondrion, GO:0008026 - ATP-dependent helicase activity		
19125	_	OsRH3	_	RNA helicase 3			3	Q0DM51. LOC_Os03g61220. DEAD-box RNA helicase protein.		Os03g0827700	LOC_Os03g61220.2, LOC_Os03g61220.1				GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0005634 - nucleus		
19126	_	OsRH6	_	RNA helicase 6			4	Q7XMK8. LOC_Os04g45040. DEAD-box RNA helicase protein.		Os04g0533000	LOC_Os04g45040.3, LOC_Os04g45040.2, LOC_Os04g45040.1				GO:0003723 - RNA binding, GO:0006417 - regulation of translation, GO:0005524 - ATP binding, GO:0000932 - cytoplasmic mRNA processing body, GO:0006397 - mRNA processing		
19127	_	OsRH7	_	RNA helicase 7			9	Q650T9. LOC_Os09g34910. DEAD-box RNA helicase protein.		Os09g0520700	LOC_Os09g34910.1				GO:0051604 - protein maturation, GO:0008026 - ATP-dependent helicase activity, GO:0005730 - nucleolus, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19128	_	OsRH8	_	RNA helicase 8			2	Q6H7S2. LOC_Os02g42860. DEAD-box RNA helicase protein.		Os02g0641800	LOC_Os02g42860.1				GO:0000932 - cytoplasmic mRNA processing body, GO:0006417 - regulation of translation, GO:0003723 - RNA binding, GO:0006397 - mRNA processing, GO:0005524 - ATP binding		
19129	_	OsRH9	_	RNA helicase 9			12	Q0ILZ4. LOC_Os12g41715. DEAD-box RNA helicase protein.		Os12g0611200	LOC_Os12g41715.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19130	_	OsRH12	_	RNA helicase 12			10	Q109G2. LOC_Os10g35990. DEAD-box RNA helicase protein.		Os10g0503700	LOC_Os10g35990.2, LOC_Os10g35990.1				GO:0006397 - mRNA processing, GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0006417 - regulation of translation, GO:0000932 - cytoplasmic mRNA processing body		
19131	_	OsRH13	_	RNA helicase 13			4	A3AVH5. LOC_Os04g43140. DEAD-box RNA helicase protein.		Os04g0510400	LOC_Os04g43140.1				GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity		
19132	_	OsRH14, p68	_	RNA helicase 14			1	Q5VQL1. LOC_Os01g07740. DEAD-box RNA helicase protein.		Os01g0172200	LOC_Os01g07740.3, LOC_Os01g07740.2, LOC_Os01g07740.1				GO:0006364 - rRNA processing, GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0005634 - nucleus		
19133	_	OsRH16	_	RNA helicase 16			3	Q6ATJ8. LOC_Os03g51900. DEAD-box RNA helicase protein.		Os03g0728800	LOC_Os03g51900.1				GO:0006606 - protein import into nucleus, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity		
19134	_	OsRH19, eIF4A-2	_	RNA helicase 19			2	Q0E2Q3. LOC_Os02g12840. DEAD-box RNA helicase protein.		Os02g0221300	LOC_Os02g12840.1				GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0003743 - translation initiation factor activity		
19135	_	OsRH20	_	RNA helicase 20			1	Q5QMN3. LOC_Os01g10050. DEAD-box RNA helicase protein.		Os01g0197200	LOC_Os01g10050.2, LOC_Os01g10050.1				GO:0008026 - ATP-dependent helicase activity, GO:0005829 - cytosol, GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, GO:0006364 - rRNA processing, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19136	_	OsRH21	_	RNA helicase 21			3	Q53RK8. LOC_Os03g50090. DEAD-box RNA helicase protein.		Os03g0708600	LOC_Os03g50090.4, LOC_Os03g50090.3, LOC_Os03g50090.2, LOC_Os03g50090.1				GO:0006397 - mRNA processing, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0005737 - cytoplasm		
19137	_	OsRH22	_	RNA helicase 22			9	Q6H601. LOC_Os09g21520. DEAD-box RNA helicase protein.		Os09g0383400	LOC_Os09g21520.2, LOC_Os09g21520.1				GO:0008026 - ATP-dependent helicase activity, GO:0009220 - pyrimidine ribonucleotide biosynthetic process, GO:0009507 - chloroplast, GO:0003723 - RNA binding, GO:0005524 - ATP binding		
19138	_	OsRH24	_	RNA helicase 24			3	Q10MH8. LOC_Os03g19530. DEAD-box RNA helicase protein.		Os03g0308500	LOC_Os03g19530.1				GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding, GO:0005524 - ATP binding		
19139	_	OsRH27	_	RNA helicase 27			3	Q84T03. LOC_Os03g58810. DEAD-box RNA helicase protein.		Os03g0802700	LOC_Os03g58810.1				GO:0003723 - RNA binding, GO:0005524 - ATP binding		
19140	_	OsRH28	_	RNA helicase 28			12	Q0INC5. LOC_Os12g29660. DEAD-box RNA helicase protein.		Os12g0481100	LOC_Os12g29660.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity		
19141	_	OsRH30	_	RNA helicase 30			1	Q5N7W4. LOC_Os01g68320. DEAD-box RNA helicase protein.		Os01g0911100	LOC_Os01g68320.5, LOC_Os01g68320.4, LOC_Os01g68320.3, LOC_Os01g68320.2, LOC_Os01g68320.1				GO:0005524 - ATP binding, GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, GO:0005634 - nucleus, GO:0006364 - rRNA processing, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity		
19142	_	OsRH32	_	RNA helicase 32			7	Q0D622. LOC_Os07g33340. DEAD-box RNA helicase protein.		Os07g0517000	LOC_Os07g33340.1				GO:0005524 - ATP binding, GO:0005730 - nucleolus, GO:0006606 - protein import into nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding		
19143	_	OsRH34, RH34	_	RNA helicase 34			3	Q10I26. LOC_Os03g36930. DEAD-box RNA helicase protein. homologous to eukaryotic initiation factor 4AIII (eIF4AIII). 	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility,  Seed	Os03g0566800	LOC_Os03g36930.1				GO:0005524 - ATP binding, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0009555 - pollen development, GO:0080050 - regulation of seed development, GO:0035145 - exon-exon junction complex, GO:0006364 - rRNA processing, GO:0005730 - nucleolus, GO:0003723 - RNA binding, GO:0048573 - photoperiodism, flowering, GO:0009790 - embryonic development	TO:0000653 - seed development trait, TO:0000180 - spikelet fertility, TO:0000620 - embryo development trait, TO:0000145 - internode length, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity	PO:0007631 - plant embryo stage , PO:0001007 - pollen development stage , PO:0001170 - seed development stage , PO:0025034 - leaf , PO:0020103 - flag leaf 
19144	_	OsRH35A	_	RNA helicase 35A			2	Q0E3X4. LOC_Os02g05660. DEAD-box RNA helicase protein.		Os02g0150100	LOC_Os02g05660.1				GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0008270 - zinc ion binding		
19145	_	OsRH35B	_	RNA helicase 35B			6	Q5Z6G5. LOC_Os06g48210. DEAD-box RNA helicase protein.		Os06g0697200	LOC_Os06g48210.1				GO:0003723 - RNA binding, GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0008270 - zinc ion binding		
19146	_	OsRH36	_	RNA helicase 36		osrh36	7	Q8L4E9. LOC_Os07g43980. DEAD-box RNA helicase protein. GO:0090406: pollen tube. OsRH36 is a functional ortholog of AtRH36. It is suggested that OsRH36 is required for rRNA biogenesis and female gametophyte development in rice (Huang et al. 2010). a predicted lethal-phenotype gene in Lloyd et al. 2015.		Os07g0633500	LOC_Os07g43980.1				GO:0009791 - post-embryonic development, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006364 - rRNA processing, GO:0006606 - protein import into nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0009561 - megagametogenesis, GO:0009553 - embryo sac development		
19147	_	OsRH37	_	RNA helicase 37			3	Q75HJ0. LOC_Os03g59050. DEAD-box RNA helicase protein.		Os03g0805200	LOC_Os03g59050.1				GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0004386 - helicase activity		
19148	_	OsRH38	_	RNA helicase 38			3	Q10RI7. LOC_Os03g06220. DEAD-box RNA helicase protein.		Os03g0158200	LOC_Os03g06220.1				GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0010286 - heat acclimation, GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0003724 - RNA helicase activity, GO:0016973 - poly(A)+ mRNA export from nucleus, GO:0009644 - response to high light intensity, GO:0009409 - response to cold, GO:0008186 - RNA-dependent ATPase activity, GO:0008026 - ATP-dependent helicase activity, GO:0006457 - protein folding, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005635 - nuclear envelope		
19149	_	OsRH39	_	RNA helicase 39			1	Q5VRY0. LOC_Os01g08930. DEAD-box RNA helicase protein. GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis. GO:1901259: chloroplast rRNA processing.		Os01g0184500	LOC_Os01g08930.1				GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0070180 - LSU rRNA binding, GO:0009658 - chloroplast organization, GO:0006399 - tRNA metabolic process, GO:0009507 - chloroplast		
19150	_	OsRH40, DRH1	_	RNA helicase 40			11	LOC_Os11g46240. DEAD-box RNA helicase protein. 		Os11g0689400	LOC_Os11g46240.1				GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0003676 - nucleic acid binding		
19151	_	OsRH41	_	RNA helicase 41			2	Q0E2Z7. LOC_Os02g10770. DEAD-box RNA helicase protein. 		Os02g0201900	LOC_Os02g10770.2				GO:0008026 - ATP-dependent helicase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19152	_	OsRH45	_	RNA helicase 45			8	Q0J7Y8. LOC_Os08g05810. DEAD-box RNA helicase protein. 		Os08g0154200	LOC_Os08g05810.1				GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0003723 - RNA binding		
19153	_	OsRH47A	_	RNA helicase 47A			2	Q6H874. LOC_Os02g42406. DEAD-box RNA helicase protein. 		Os02g0636300	LOC_Os02g42406.1				GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19154	_	OsRH47B	_	RNA helicase 47B			3	Q10PV9. LOC_Os03g12000. DEAD-box RNA helicase protein. 		Os03g0219700	LOC_Os03g12000.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0004386 - helicase activity		
19155	_	OsRH48	_	RNA helicase 48			2	Q6K7R9. LOC_Os02g57980. DEAD-box RNA helicase protein. 		Os02g0826100	LOC_Os02g57980.1				GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19156	_	OsRH50, OsBIRH1	_	RNA helicase 50, BTH-induced RNA helicase 1			3	Q0DVX2. LOC_Os03g01830. BI118654. DEAD-box RNA helicase protein. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0108600	LOC_Os03g01830.1				GO:0003723 - RNA binding, GO:0003724 - RNA helicase activity, GO:0004004 - ATP-dependent RNA helicase activity, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0005524 - ATP binding, GO:0006364 - rRNA processing, GO:0006399 - tRNA metabolic process, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0006968 - cellular defense response, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0009793 - embryonic development ending in seed dormancy, GO:0009817 - defense response to fungus, incompatible interaction, GO:0010103 - stomatal complex morphogenesis, GO:0016226 - iron-sulfur cluster assembly, GO:0009607 - response to biotic stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0071369 - cellular response to ethylene stimulus, GO:0071395 - cellular response to jasmonic acid stimulus, GO:0071446 - cellular response to salicylic acid stimulus, GO:0006979 - response to oxidative stress, GO:0051707 - response to other organism	TO:0000112 - disease resistance, TO:0002657 - oxidative stress	
19157	_	OsRH51	_	RNA helicase 51			6	Q0DBS1. LOC_Os06g34420. DEAD-box RNA helicase protein. 		Os06g0535100	LOC_Os06g34420.1				GO:0004386 - helicase activity, GO:0003723 - RNA binding, GO:0005524 - ATP binding		
19158	_	OsRH52A, RH52A	_	RNA helicase 52A			6	Q0DB53. LOC_Os06g40020. DEAD-box RNA helicase protein. 	 Reproductive organ	Os06g0602400	LOC_Os06g40020.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0004386 - helicase activity		PO:0020094 - plant egg cell 
19159	_	OsRH52B, RH52B, RBP-100	_	RNA helices 52B, DEAD-box ATP-dependent RNA helices 52B, RNA-binding RBP-100			7	Q6Z4K6. LOC_Os07g10250. DEAD-box RNA helicase protein. 		Os07g0202100	LOC_Os07g10250.1				GO:0003723 - RNA binding, GO:0004386 - helicase activity, GO:0005524 - ATP binding		
19160	_	OsRH52C	_	RNA helicase 52C			11	Q2R1M8. LOC_Os11g38670. DEAD-box RNA helicase protein. 		Os11g0599500	LOC_Os11g38670.1				GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0003723 - RNA binding		
19161	_	OsRH53	_	RNA helicase 53			7	Q0D8N0. LOC_Os07g05050. DEAD-box RNA helicase protein. 		Os07g0143700	LOC_Os07g05050.3, LOC_Os07g05050.2, LOC_Os07g05050.1				GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0003723 - RNA binding		
19162	_	OsRH57	_	RNA helicase 57			7	Q5K5B6. LOC_Os07g45360. DEAD-box RNA helicase protein. 		Os07g0647900	LOC_Os07g45360.1				GO:0005524 - ATP binding, GO:0009220 - pyrimidine ribonucleotide biosynthetic process, GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding		
19163	RH58	OsRH58	RNA HELICASE 58	RNA helicase 58	RNA HELICASE 58		1	Q0JFN7. DEAD-box RNA helicase protein. TO:0000905: seed yield trait.	 Tolerance and resistance - Stress tolerance	Os01g0970600	LOC_Os01g73900.1				GO:0009737 - response to abscisic acid stimulus, GO:0009411 - response to UV, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0032544 - plastid translation, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0009507 - chloroplast	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000160 - UV light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height	
19164	_	mog-4	_				3	LOC_Os03g17432. DEAD-box RNA helicase protein. 		Os03g0282700	LOC_Os03g17432.1				GO:0004386 - helicase activity		
19165	_	OsCER7	_	ECERI1FERUM7, ECERI1FERUM 7			2	wax synthesis related gene. LOC_Os02g34570.	 Biochemical character	Os02g0550700	LOC_Os02g34570.2, LOC_Os02g34570.1						
19166	_	OsCER4	_	ECERI1FERUM4, ECERI1FERUM 4			4	wax synthesis related gene. LOC_Os04g28620.	 Biochemical character	Os04g0354600	LOC_Os04g28620.1				GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity		
19167	_	OsPAS2	_	PASTICCINO2, PASTICCINO 2			4	Q7XSZ4. wax synthesis related gene. LOC_Os04g20280.	 Biochemical character	Os04g0271200	LOC_Os04g20280.2, LOC_Os04g20280.1				GO:0007275 - multicellular organismal development, GO:0006633 - fatty acid biosynthetic process, GO:0016829 - lyase activity, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane		
19168	_	OsCCT01, OsCMF1	_	CCT domain-containing gene 1, CCT (CO, CO-LIKE and TOC1) domain protein 1, CCT domain protein 1, CCT MOTIF FAMILY (CMF) gene 1			1	LOC_Os01g61900. OsCCT01 acted as a negative regulator upstream of Ehd1 in the photoperiod flowering pathway under SD and LD.	 Reproductive organ - Heading date	Os01g0835700	LOC_Os01g61900.1				GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading	
19169	_	OsCCT02, OsCMF2, OsSTA46	_	CCT domain-containing gene 2, CCT (CO, CO-LIKE and TOC1) domain protein 2, CCT domain protein 2, CCT MOTIF FAMILY (CMF) gene 2			2	LOC_Os02g01990. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0110100	LOC_Os02g01990.1						PO:0009066 - anther 
19170	_	OsCCT03, OsCMF3	_	CCT domain-containing gene 3, CCT (CO, CO-LIKE and TOC1) domain protein 3, CCT domain protein 3, CCT MOTIF FAMILY (CMF) gene 3			2	LOC_Os02g05470. 		Os02g0148000	LOC_Os02g05470.2, LOC_Os02g05470.1						
19171	_	OsCCT10, OsCMF4	_	CCT domain-containing gene 10, CCT (CO, CO-LIKE and TOC1) domain protein 10, CCT domain protein 10, CCT MOTIF FAMILY (CMF) gene 4			3	LOC_Os03g04620. 		Os03g0139500	LOC_Os03g04620.4, LOC_Os03g04620.3, LOC_Os03g04620.2, LOC_Os03g04620.1						
19172	_	OsCCT17, OsCMF5	_	CCT domain-containing gene 17, CCT (CO, CO-LIKE and TOC1) domain protein 17, CCT domain protein 17, CCT MOTIF FAMILY (CMF) gene 5			5	LOC_Os05g38990. 		Os05g0466100	LOC_Os05g38990.1						
19173	_	OsCCT25, OsCMF7	_	CCT domain-containing gene 25, CCT (CO, CO-LIKE and TOC1) domain protein 25, CCT domain protein 25, CCT MOTIF FAMILY (CMF) gene 7			6	LOC_Os06g48610. 		Os06g0699600	LOC_Os06g48610.1						
19174	_	OsCCT34, OsCMF10, CO9	_	CCT domain-containing gene 34, CCT (CO, CO-LIKE and TOC1) domain protein 34, CCT domain protein 34, CCT MOTIF FAMILY (CMF) gene 10, CONSTANS-like protein CO9			10	LOC_Os10g32900. 		Os10g0466500	LOC_Os10g32900.2, LOC_Os10g32900.1						
19175	_	OsCCT35, OsCMF11, OsH	_	CCT domain-containing gene 35, CCT (CO, CO-LIKE and TOC1) domain protein 35, CCT domain protein 35, CCT MOTIF FAMILY (CMF) gene 11, CONSTANS-like gene H			10	LOC_Os10g41100. 		Os10g0560400	LOC_Os10g41100.1				GO:0009909 - regulation of flower development, GO:0009416 - response to light stimulus, GO:0005634 - nucleus		
19176	_	OsCCT36, OsCMF12	_	CCT domain-containing gene 36, CCT (CO, CO-LIKE and TOC1) domain protein 36, CCT domain protein 36, CCT MOTIF FAMILY (CMF) gene 12			10	LOC_Os11g01074.		Os11g0101200	LOC_Os11g01074.5, LOC_Os11g01074.4, LOC_Os11g01074.3, LOC_Os11g01074.2, LOC_Os11g01074.1						
19177	_	OsCCT37	_	CCT domain-containing gene 37, CCT (CO, CO-LIKE and TOC1) domain protein 37, CCT domain protein 37			11	LOC_Os11g01100.		Os11g0101400	LOC_Os11g01100.1						
19178	_	OsCCT39, OsCMF13	_	CCT domain-containing gene 39, CCT (CO, CO-LIKE and TOC1) domain protein 39, CCT domain protein 39, CCT MOTIF FAMILY (CMF) gene 13			12	LOC_Os12g01080.		Os12g0101000	LOC_Os12g01080.1, LOC_Os12g01060.1				GO:0008033 - tRNA processing, GO:0004540 - ribonuclease activity		
19179	_	OsCCT40	_	CCT domain-containing gene 40, CCT (CO, CO-LIKE and TOC1) domain protein 40, CCT domain protein 40			12	LOC_Os12g01100.		Os12g0101200	LOC_Os12g01100.1						
19180	_	OsCCT41, OsCMF14	_	CCT domain-containing gene 41, CCT (CO, CO-LIKE and TOC1) domain protein 41, CCT domain protein 41, CCT MOTIF FAMILY (CMF) gene 14			12	LOC_Os12g16160.		Os12g0262400	LOC_Os12g16160.1						
19181	_	OsCMF9, CMF9	_	CCT MOTIF FAMILY (CMF) gene 9			8	LOC_Os08g02620 (not found in MSU Rice Genome Annotation Project Release 7 data).									
19182	SE13	Se13, OsHY2, OsGUN3, GUN3, PS13	PHOTOSENSITIVITY 13	Genome uncoupled 3, Photoperiod-sensitivity-13		se13	1	phytochromobilin synthase. Under LD, Se13 is involved in a genetic photoperiodic flowering pathway that includes Hd1 and Ghd7.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os01g0949400	LOC_Os01g72090.2, LOC_Os01g72090.1				GO:0050619 - phytochromobilin:ferredoxin oxidoreductase activity, GO:0048573 - photoperiodism, flowering, GO:0048543 - phytochrome chromophore biosynthetic process, GO:0010024 - phytochromobilin biosynthetic process, GO:0010019 - chloroplast-nucleus signaling pathway, GO:0050897 - cobalt ion binding	TO:0002616 - flowering time, TO:0000152 - panicle number, TO:0000371 - yield trait, TO:0000137 - days to heading	
19183	_	Osmtd1	_	multi-tillering and dwarf mutant 1			8	LOC_Os08g34258. a putative inhibitor I family protein.	 Biochemical character,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os08g0441300	LOC_Os08g34258.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0009611 - response to wounding	TO:0000207 - plant height, TO:0000346 - tiller number	
19185	_	OsBAK1-10	_	bri1-associated receptor kinase 1 (BAK1) homologue 10			3	LOC_Os03g16010.	 Biochemical character	Os03g0266800	LOC_Os03g16010.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
19186	SCP1	OsSCP1	SERINE CARBOXYPEPTIDASE 1	Serine carboxypeptidase 1	SERINE CARBOXYPEPTIDASE 1		1	LOC_Os01g06490. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os01g0158200	LOC_Os01g06490.2, LOC_Os01g06490.1				GO:0004185 - serine-type carboxypeptidase activity		
19187	SCP2	OsSCP2, SCP3, OsSCP3	SERINE CARBOXYPEPTIDASE 2	Serine carboxypeptidase 2, Serine Carboxypeptidase 3	SERINE CARBOXYPEPTIDASE 2		1	LOC_Os01g11670. SCPL (serine carboxypeptidase-like) protein.Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os01g0215100	LOC_Os01g11670.1				GO:0004185 - serine-type carboxypeptidase activity		
19188	SCP3	OsSCP3	SERINE CARBOXYPEPTIDASE 3	Serine carboxypeptidase 3	SERINE CARBOXYPEPTIDASE 3		1	LOC_Os01g22980. SCPL (serine carboxypeptidase-like) protein.	 Biochemical character	Os01g0332800	LOC_Os01g22980.2, LOC_Os01g22980.1				GO:0004185 - serine-type carboxypeptidase activity		
19189	SCP4	OsSCP4	SERINE CARBOXYPEPTIDASE 4	Serine carboxypeptidase 4	SERINE CARBOXYPEPTIDASE 4		1	LOC_Os01g43890. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os01g0629600	LOC_Os01g43890.1				GO:0004185 - serine-type carboxypeptidase activity		
19190	SCP5	OsSCP5	SERINE CARBOXYPEPTIDASE 5	Serine carboxypeptidase 5	SERINE CARBOXYPEPTIDASE 5		1	LOC_Os01g61690. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os01g0833500	LOC_Os01g61690.1				GO:0004185 - serine-type carboxypeptidase activity		
19191	SCP7	OsSCP7	SERINE CARBOXYPEPTIDASE 7	Serine carboxypeptidase 7	SERINE CARBOXYPEPTIDASE 7		2	LOC_Os02g26480. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0463500	LOC_Os02g26480.2, LOC_Os02g26480.1				GO:0004185 - serine-type carboxypeptidase activity		
19192	SCP8	OsSCP8	SERINE CARBOXYPEPTIDASE 8	Serine carboxypeptidase 8	SERINE CARBOXYPEPTIDASE 8		2	LOC_Os02g42310. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0634700	LOC_Os02g42310.4, LOC_Os02g42310.3, LOC_Os02g42310.2, LOC_Os02g42310.1				GO:0004185 - serine-type carboxypeptidase activity		
19193	SCP9	OsSCP9	SERINE CARBOXYPEPTIDASE 9	Serine carboxypeptidase 9	SERINE CARBOXYPEPTIDASE 9		2	LOC_Os02g46260. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0687900	LOC_Os02g46260.6, LOC_Os02g46260.5, LOC_Os02g46260.4, LOC_Os02g46260.3, LOC_Os02g46260.2, LOC_Os02g46260.1				GO:0004185 - serine-type carboxypeptidase activity		
19194	SCP11	OsSCP11	SERINE CARBOXYPEPTIDASE 11	Serine carboxypeptidase 11	SERINE CARBOXYPEPTIDASE 11		3	LOC_Os03g09190. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0192100	LOC_Os03g09190.2, LOC_Os03g09190.1				GO:0004185 - serine-type carboxypeptidase activity		
19195	SCP12	OsSCP12	SERINE CARBOXYPEPTIDASE 12	Serine carboxypeptidase 12	SERINE CARBOXYPEPTIDASE 12		3	LOC_Os03g26920. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0386700	LOC_Os03g26920.1				GO:0004185 - serine-type carboxypeptidase activity		
19196	SCP13	OsSCP13	SERINE CARBOXYPEPTIDASE 13	Serine carboxypeptidase 13	SERINE CARBOXYPEPTIDASE 13		3	LOC_Os03g26930. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0386800	LOC_Os03g26930.1				GO:0004185 - serine-type carboxypeptidase activity		
19197	SCP14	OsSCP14	SERINE CARBOXYPEPTIDASE 14	Serine carboxypeptidase 14	SERINE CARBOXYPEPTIDASE 14		3	LOC_Os03g27480. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0392600	LOC_Os03g27480.2, LOC_Os03g27480.1				GO:0004185 - serine-type carboxypeptidase activity		
19198	SCP15	OsSCP15	SERINE CARBOXYPEPTIDASE 15	Serine carboxypeptidase 15	SERINE CARBOXYPEPTIDASE 15		3	LOC_Os03g27510. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0393066	LOC_Os03g27510.1				GO:0004185 - serine-type carboxypeptidase activity		
19199	SCP16	OsSCP16	SERINE CARBOXYPEPTIDASE 16	Serine carboxypeptidase 16	SERINE CARBOXYPEPTIDASE 16		3	LOC_Os03g27530. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0393100	LOC_Os03g27530.1				GO:0004185 - serine-type carboxypeptidase activity		
19200	SCP17	OsSCP17	SERINE CARBOXYPEPTIDASE 17	Serine carboxypeptidase 17	SERINE CARBOXYPEPTIDASE 17		3	LOC_Os03g27550. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0393375	LOC_Os03g27550.1				GO:0004185 - serine-type carboxypeptidase activity		
19201	SCP18	OsSCP18	SERINE CARBOXYPEPTIDASE 18	Serine carboxypeptidase 18	SERINE CARBOXYPEPTIDASE 18		3	LOC_Os03g27590. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0393700	LOC_Os03g27590.3, LOC_Os03g27590.2, LOC_Os03g27590.1				GO:0004185 - serine-type carboxypeptidase activity		
19202	SCP19	OsSCP19	SERINE CARBOXYPEPTIDASE 19	Serine carboxypeptidase 19	SERINE CARBOXYPEPTIDASE 19		3	LOC_Os03g52040. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0730400	LOC_Os03g52040.3, LOC_Os03g52040.2, LOC_Os03g52040.1				GO:0004185 - serine-type carboxypeptidase activity		
19203	SCP20	OsSCP20	SERINE CARBOXYPEPTIDASE 20	Serine carboxypeptidase 20	SERINE CARBOXYPEPTIDASE 20		3	LOC_Os03g52070. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0730500	LOC_Os03g52070.3, LOC_Os03g52070.2, LOC_Os03g52070.1				GO:0004185 - serine-type carboxypeptidase activity		
19204	SCP21	OsSCP21	SERINE CARBOXYPEPTIDASE 21	Serine carboxypeptidase 21	SERINE CARBOXYPEPTIDASE 21		3	LOC_Os03g52080. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0730700	LOC_Os03g52080.1				GO:0004185 - serine-type carboxypeptidase activity		
19205	SCP22	OsSCP22	SERINE CARBOXYPEPTIDASE 22	Serine carboxypeptidase 22	SERINE CARBOXYPEPTIDASE 22		4	LOC_Os04g09720. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os04g0176400	LOC_Os04g09720.2, LOC_Os04g09720.1				GO:0004185 - serine-type carboxypeptidase activity		
19206	SCP23	OsSCP23	SERINE CARBOXYPEPTIDASE 23	Serine carboxypeptidase 23	SERINE CARBOXYPEPTIDASE 23		4	LOC_Os04g25560. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os04g0321700	LOC_Os04g25560.2, LOC_Os04g25560.1				GO:0004185 - serine-type carboxypeptidase activity		
19207	SCP24	OsSCP24	SERINE CARBOXYPEPTIDASE 24	Serine carboxypeptidase 24	SERINE CARBOXYPEPTIDASE 24		4	LOC_Os04g32540. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os04g0396800	LOC_Os04g32540.2, LOC_Os04g32540.1				GO:0004185 - serine-type carboxypeptidase activity		
19208	SCP25	OsSCP25	SERINE CARBOXYPEPTIDASE 25	Serine carboxypeptidase 25	SERINE CARBOXYPEPTIDASE 25		4	LOC_Os04g44410. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os04g0525700	LOC_Os04g44410.1				GO:0004185 - serine-type carboxypeptidase activity, GO:0005576 - extracellular region		
19209	SCP29	OsSCP29	SERINE CARBOXYPEPTIDASE 29	Serine carboxypeptidase 29	SERINE CARBOXYPEPTIDASE 29		5	LOC_Os05g50570. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os05g0582500	LOC_Os05g50570.1				GO:0004185 - serine-type carboxypeptidase activity		
19210	SCP30	OsSCP30	SERINE CARBOXYPEPTIDASE 30	Serine carboxypeptidase 30	SERINE CARBOXYPEPTIDASE 30		5	LOC_Os05g50580. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os05g0582600	LOC_Os05g50580.1				GO:0004185 - serine-type carboxypeptidase activity		
19211	SCP31	OsSCP31	SERINE CARBOXYPEPTIDASE 31	Serine carboxypeptidase 31	SERINE CARBOXYPEPTIDASE 31		5	LOC_Os05g50600. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os05g0582800	LOC_Os05g50600.1				GO:0004185 - serine-type carboxypeptidase activity		
19212	SCP32	OsSCP32	SERINE CARBOXYPEPTIDASE 32	Serine carboxypeptidase 32	SERINE CARBOXYPEPTIDASE 32		6	LOC_Os06g08720. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0186400	LOC_Os06g08720.3, LOC_Os06g08720.2, LOC_Os06g08720.1				GO:0005576 - extracellular region, GO:0004185 - serine-type carboxypeptidase activity, GO:0019932 - second-messenger-mediated signaling, GO:0005773 - vacuole		
19213	SCP33	OsSCP33	SERINE CARBOXYPEPTIDASE 33	Serine carboxypeptidase 33	SERINE CARBOXYPEPTIDASE 33		6	LOC_Os06g13410. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0242100	LOC_Os06g13410.1				GO:0008168 - methyltransferase activity		
19214	SCP34	OsSCP34	SERINE CARBOXYPEPTIDASE 34	Serine carboxypeptidase 34	SERINE CARBOXYPEPTIDASE 34		6	LOC_Os06g13420. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character		LOC_Os06g13420						
19215	SCP35	OsSCP35	SERINE CARBOXYPEPTIDASE 35	Serine carboxypeptidase 35	SERINE CARBOXYPEPTIDASE 35		6	LOC_Os06g32740. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0519700	LOC_Os06g32740.1						
19216	SCP36	OsSCP36	SERINE CARBOXYPEPTIDASE 36	Serine carboxypeptidase 36	SERINE CARBOXYPEPTIDASE 36		6	LOC_Os06g32770. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character		LOC_Os06g32770						
19217	SCP37	OsSCP37	SERINE CARBOXYPEPTIDASE 37	Serine carboxypeptidase 37	SERINE CARBOXYPEPTIDASE 37		6	LOC_Os06g36570. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0561100	LOC_Os06g36570.1				GO:0004185 - serine-type carboxypeptidase activity		
19218	SCP38	OsSCP38	SERINE CARBOXYPEPTIDASE 38	Serine carboxypeptidase 38	SERINE CARBOXYPEPTIDASE 38		6	LOC_Os06g51370. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0730000	LOC_Os06g51370.1				GO:0004185 - serine-type carboxypeptidase activity		
19219	SCP40	OsSCP40	SERINE CARBOXYPEPTIDASE 40	Serine carboxypeptidase 40	SERINE CARBOXYPEPTIDASE 40		7	LOC_Os07g46350. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os07g0656900	LOC_Os07g46350.1				GO:0004185 - serine-type carboxypeptidase activity		
19220	SCP41	OsSCP41	SERINE CARBOXYPEPTIDASE 41	Serine carboxypeptidase 41	SERINE CARBOXYPEPTIDASE 41		8	LOC_Os08g44640. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os08g0560500	LOC_Os08g44640.3, LOC_Os08g44640.2, LOC_Os08g44640.1				GO:0004185 - serine-type carboxypeptidase activity		
19221	SCP42	OsSCP42	SERINE CARBOXYPEPTIDASE 42	Serine carboxypeptidase 42	SERINE CARBOXYPEPTIDASE 42		9	LOC_Os09g28830. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os09g0462875/Os09g0462901					GO:0004185 - serine-type carboxypeptidase activity		
19222	SCP43	OsSCP43	SERINE CARBOXYPEPTIDASE 43	Serine carboxypeptidase 43	SERINE CARBOXYPEPTIDASE 43		9	LOC_Os09g28840. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os09g0463100	LOC_Os09g28840.1						
19223	SCP44	OsSCP44	SERINE CARBOXYPEPTIDASE 44	Serine carboxypeptidase 44	SERINE CARBOXYPEPTIDASE 44		10	LOC_Os10g01110. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os10g0101100	LOC_Os10g01110.1				GO:0004185 - serine-type carboxypeptidase activity, GO:0019748 - secondary metabolic process		
19224	SCP45	OsSCP45, OsSCP46, SCP46	SERINE CARBOXYPEPTIDASE 45	Serine carboxypeptidase 45, Serine carboxypeptidase 46	SERINE CARBOXYPEPTIDASE 45		10	LOC_Os10g01134. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os10g0101200	LOC_Os10g01134.2, LOC_Os10g01134.1				GO:0004185 - serine-type carboxypeptidase activity		
19225	SCP47	OsSCP47	SERINE CARBOXYPEPTIDASE 47	Serine carboxypeptidase 47	SERINE CARBOXYPEPTIDASE 47		10	LOC_Os10g39560. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os10g0541600	LOC_Os10g39560.1				GO:0004185 - serine-type carboxypeptidase activity		
19226	SCP48	OsSCP48	SERINE CARBOXYPEPTIDASE 48	Serine carboxypeptidase 48	SERINE CARBOXYPEPTIDASE 48		11	LOC_Os11g10750. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0213600	LOC_Os11g10750.1				GO:0004185 - serine-type carboxypeptidase activity		
19227	SCP49	OsSCP49, OsSCP50, SCP50	SERINE CARBOXYPEPTIDASE 49	Serine carboxypeptidase 49, Serine carboxypeptidase 50	SERINE CARBOXYPEPTIDASE 49		11	LOC_Os11g24180. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0430000	LOC_Os11g24180.1				GO:0004185 - serine-type carboxypeptidase activity		
19228	SCP51	OsSCP51	SERINE CARBOXYPEPTIDASE 51	Serine carboxypeptidase 51	SERINE CARBOXYPEPTIDASE 51		11	LOC_Os11g24290. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0431100	LOC_Os11g24290.1				GO:0004185 - serine-type carboxypeptidase activity		
19229	SCP52	OsSCP52	SERINE CARBOXYPEPTIDASE 52	Serine carboxypeptidase 52	SERINE CARBOXYPEPTIDASE 52		11	LOC_Os11g24320. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character		LOC_Os11g24320				GO:0004185 - serine-type carboxypeptidase activity		
19230	SCP53	OsSCP53	SERINE CARBOXYPEPTIDASE 53	Serine carboxypeptidase 53	SERINE CARBOXYPEPTIDASE 53		11	LOC_Os11g24340. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0431400	LOC_Os11g24340.1				GO:0004185 - serine-type carboxypeptidase activity		
19231	SCP54	OsSCP54, OsSCP55, SCP55	SERINE CARBOXYPEPTIDASE 54	Serine carboxypeptidase 54, Serine carboxypeptidase 55	SERINE CARBOXYPEPTIDASE 54		11	LOC_Os11g24374. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0431700	LOC_Os11g24374.1				GO:0004185 - serine-type carboxypeptidase activity		
19232	SCP56	OsSCP56	SERINE CARBOXYPEPTIDASE 56	Serine carboxypeptidase 56	SERINE CARBOXYPEPTIDASE 56		11	LOC_Os11g24510. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0432900	LOC_Os11g24510.3, LOC_Os11g24510.2, LOC_Os11g24510.1				GO:0004185 - serine-type carboxypeptidase activity		
19233	SCP57	OsSCP57, OsSCP58, SCP58	SERINE CARBOXYPEPTIDASE 57	Serine carboxypeptidase 57, Serine carboxypeptidase 58	SERINE CARBOXYPEPTIDASE 57		11	LOC_Os11g27170. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character		LOC_Os11g27170				GO:0004185 - serine-type carboxypeptidase activity		
19234	SCP59	OsSCP59, OsSCP60, SCP60	SERINE CARBOXYPEPTIDASE 59	Serine carboxypeptidase 59, Serine carboxypeptidase 60	SERINE CARBOXYPEPTIDASE 59		11	LOC_Os11g27264. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0460800	LOC_Os11g27264.2, LOC_Os11g27264.1				GO:0004185 - serine-type carboxypeptidase activity		
19235	SCP61	OsSCP61, OsSCP62, SCP62	SERINE CARBOXYPEPTIDASE 61	Serine carboxypeptidase 61, Serine carboxypeptidase 62	SERINE CARBOXYPEPTIDASE 61		11	LOC_Os11g27329. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0461000	LOC_Os11g27329.6, LOC_Os11g27329.5, LOC_Os11g27329.4, LOC_Os11g27329.3, LOC_Os11g27329.2, LOC_Os11g27329.1				GO:0004185 - serine-type carboxypeptidase activity		
19236	SCP63	OsSCP63	SERINE CARBOXYPEPTIDASE 63	Serine carboxypeptidase 63	SERINE CARBOXYPEPTIDASE 63		11	LOC_Os11g31980. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0522900	LOC_Os11g31980.1				GO:0004185 - serine-type carboxypeptidase activity		
19237	SCP64	OsSCP64	SERINE CARBOXYPEPTIDASE 64	Serine carboxypeptidase 64	SERINE CARBOXYPEPTIDASE 64		11	LOC_Os11g42390. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0643400	LOC_Os11g42390.1				GO:0004185 - serine-type carboxypeptidase activity		
19238	SCP66	OsSCP66	SERINE CARBOXYPEPTIDASE 66	Serine carboxypeptidase 66	SERINE CARBOXYPEPTIDASE 66		12	LOC_Os12g39170. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os12g0581400	LOC_Os12g39170.1				GO:0004185 - serine-type carboxypeptidase activity		
19239	_		_	Os3378 Transposase			5	Os3378 Transposase encoded by MULE Os3378-1 (AP008211: 1334664 to 18339057). LOC_Os05g31510.	 Other	Os05g0379100	LOC_Os05g31510.1						
19240	_		_	Os3378 Transposase			4	Os3378 Transposase encoded by MULE Os3378-2 (AP008210: 16795928-16800322) or MULE Os3378-3 (AP008210: 16760748-16756355). LOC_Os04g28290.	 Other	Os04g0350900	LOC_Os04g28290.1						
19241	_		_	Os3378 Transposase			4	Os3378 Transposase encoded by MULE Os3378-2 (AP008210: 16795928-16800322) or MULE Os3378-3 (AP008210: 16760748-16756355). LOC_Os04g28350.	 Other	Os04g0351600	LOC_Os04g28350.1						
19242	_		_	Os3378 Transposase			11	Os3378 Transposase encoded by MULE Os3378-4 (AP008217: 28527877-28531720). LOC_Os11g44180.	 Other		LOC_Os11g44180				GO:0008270 - zinc ion binding		
19243	_		_	Os3378-Z transposase				cDNA from Z418 (an Oryza sativa somaclonal mutant). KJ865693.	 Other								
19244	_	Os3378-Z	_	MULE Os3378-Z				MULE Os3378 from a rice (Oryza sativa) somaclonal mutant, Z418.	 Other								
19245	_	OsrbcL1, rbcL1	_	ribulose bisphosphate carboxylase large chain 1			10	LOC_Os10g21268.	 Biochemical character	Os10g0356000	LOC_Os10g21268.1				GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0000287 - magnesium ion binding		
19246	_	OsPPT1, PPT1	_	prenyltransferase 1			3	LOC_Os03g09060.	 Biochemical character	Os03g0190100	LOC_Os03g09060.1				GO:0010236 - plastoquinone biosynthetic process, GO:0046428 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016556 - mRNA modification, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0010207 - photosystem II assembly, GO:0042372 - phylloquinone biosynthetic process, GO:0010103 - stomatal complex morphogenesis, GO:0031969 - chloroplast membrane, GO:0016021 - integral to membrane		
19247	_	OsMSR1, MSR1, OsMSRB5, MSRB5	_	peptide methionine sulfoxidereductase 1, Methionine sulfoxide reductase B5			3	LOC_Os03g24600. Q10L32.	 Biochemical character	Os03g0360700	LOC_Os03g24600.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0005829 - cytosol, GO:0033743 - peptide-methionine (R)-S-oxide reductase activity, GO:0030091 - protein repair, GO:0005739 - mitochondrion		
19248	_	Os4NPP1, 4NPP1	_	4-nitrophenylphosphatase 1			4	LOC_Os04g41340.	 Biochemical character	Os04g0490800	LOC_Os04g41340.1				GO:0016791 - phosphatase activity		
19249	_	OsDNLZ1, DNLZ1	_	DNL type zinc finger domain-containing protein 1			6	LOC_Os06g50870.		Os06g0724400	LOC_Os06g50870.1				GO:0008270 - zinc ion binding		
19250	_	OsSHM1, SHM1, OsSHMT1, SHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3	_	serine hydroxymethyltransferase 1, chlorophyll-deficient mutant 1, serine hydroxymethyltransferase-3		osshm1, oscdm1	3	OsSHTM3 in Mishra et al. 2019. GO:1901002: positive regulation of response to salt stress. GO:0035999: tetrahydrofolate interconversion. TO:0006060: leaf chlorosis. 	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0738400	LOC_Os03g52840.1, LOC_Os03g52840.3, LOC_Os03g52840.2				GO:0009651 - response to salt stress, GO:0004372 - glycine hydroxymethyltransferase activity, GO:0005739 - mitochondrion, GO:0006544 - glycine metabolic process, GO:0006563 - L-serine metabolic process, GO:0006979 - response to oxidative stress, GO:0008168 - methyltransferase activity, GO:0009853 - photorespiration, GO:0030170 - pyridoxal phosphate binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009760 - C4 photosynthesis, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
19251	_	OsSHM2, SHM2, OsSHMT2, SHMT2, OsSHTM4, SHTM4	_	serine hydroxymethyltransferase 2, serine hydroxymethyltransferase-4			11	GO:0035999: tetrahydrofolate interconversion. OsSHTM4 in Mishra et al. 2019.	 Biochemical character	Os11g0455800	LOC_Os11g26860.1				GO:0004372 - glycine hydroxymethyltransferase activity, GO:0006544 - glycine metabolic process, GO:0030170 - pyridoxal phosphate binding		PO:0009005 - root 
19252	_	OsSHM3, SHM3, OsSHMT3, SHMT3, OsSHTM5, SHTM5	_	serine hydroxymethyltransferase 3, serine hydroxymethyltransferase-5			12	GO:0035999: tetrahydrofolate interconversion. CT853747, CK063929, CI307114. OsSHTM5 in Mishra et al. 2019.	 Biochemical character	Os12g0409000	LOC_Os12g22030.2, LOC_Os12g22030.1				GO:0004372 - glycine hydroxymethyltransferase activity, GO:0006544 - glycine metabolic process, GO:0030170 - pyridoxal phosphate binding		
19253	_	OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1	_	serine hydroxymethyltransferase 4, serine hydroxymethyltransferase-1			1	OsSHTM1 in Mishra et al. 2019.	 Biochemical character	Os01g0874900	LOC_Os01g65410.1				GO:0006563 - L-serine metabolic process, GO:0008168 - methyltransferase activity, GO:0030170 - pyridoxal phosphate binding, GO:0006544 - glycine metabolic process, GO:0004372 - glycine hydroxymethyltransferase activity		PO:0009006 - shoot system 
19254	_	OsSHM5, SHM5, OsSHMT5, SHMT5, OsSHTM2, SHTM2	_	serine hydroxymethyltransferase 5, serine hydroxymethyltransferase-2			5	GO:0035999: tetrahydrofolate interconversion. OsSHTM2 in Mishra et al. 2019.	 Biochemical character	Os05g0429000	LOC_Os05g35440.2, LOC_Os05g35440.1				GO:0004372 - glycine hydroxymethyltransferase activity, GO:0006544 - glycine metabolic process, GO:0006563 - L-serine metabolic process, GO:0008168 - methyltransferase activity, GO:0030170 - pyridoxal phosphate binding		
19255	_	OsSRFP1, SRFP1	_	Stress-related RING Finger Protein 1			3	LOC_Os03g22680. an ortholog of  Arabidopsis MIEL1.	 Tolerance and resistance - Stress tolerance	Os03g0348900	LOC_Os03g22680.2, LOC_Os03g22680.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0006979 - response to oxidative stress, GO:0004842 - ubiquitin-protein ligase activity, GO:0009409 - response to cold, GO:0009628 - response to abiotic stimulus, GO:0008270 - zinc ion binding	TO:0002657 - oxidative stress, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
19256	_	DFO1, EMF1, OsDFO1, OsEMF1, CCP1, OsCCP1	_	DEFORMED FLORAL ORGAN1, DEFORMED FLORAL ORGAN 1, EMBRYONIC FLOWER1, EMBRYONIC FLOWER 1, CURVED CHIMERIC PALEA 1		dfo1, dfo1-1, dfo1-2, ccp1	1	LOC_Os01g12890. an ortholog of Arabidopsis EMF1. a rice epigenetic repressor. AY885887-AY885915 and DQ374801-DQ374828 (O. sativa and other wild rice species, partial cds). TO:1000024: palea morphology trait. TO:0001079: caryopsis fruit morphology trait. GO:1902464: regulation of histone H3-K27 trimethylation.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0229300	LOC_Os01g12890.1				GO:0048497 - maintenance of floral organ identity, GO:0040029 - regulation of gene expression, epigenetic, GO:0009908 - flower development, GO:0009741 - response to brassinosteroid stimulus, GO:0048437 - floral organ development, GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000734 - grain length, TO:0000622 - flower development trait, TO:0000499 - flower anatomy and morphology trait, TO:0002677 - brassinosteroid sensitivity, TO:0000614 - lemma shape	PO:0001048 - palea development stage , PO:0007615 - flower development stage 
19257	_	OsTHI1, THI1, Osthi2, thi2	_	Thionin 1, thionin 2			6	LOC_Os06g31280. PR13 family. OsTHI1 in Ji et al. 2015.	 Tolerance and resistance	Os06g0509900	LOC_Os06g31280.1				GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0002215 - defense response to nematode, GO:0006952 - defense response	TO:0000615 - abscisic acid sensitivity, TO:0000384 - nematode damage resistance, TO:0000172 - jasmonic acid sensitivity	
19258	_	OsTHI2, THI2, Osthi3, thi3	_	Thionin 2, thionin 3			6	LOC_Os06g31800. PR13 family. OsTHI2 in Ji et al. 2015.	 Tolerance and resistance		LOC_Os06g31800				GO:0009751 - response to salicylic acid stimulus, GO:0002215 - defense response to nematode, GO:0006952 - defense response, GO:0009737 - response to abscisic acid stimulus	TO:0000384 - nematode damage resistance, TO:0000615 - abscisic acid sensitivity	
19259	_	OsTHI3, THI3, Osthi1, thi1	_	Thionin 3, thionin 1			6	LOC_Os06g31890. PR13 family. OsTHI3 in Ji et al. 2015.	 Tolerance and resistance	Os06g0513050	LOC_Os06g31890.1				GO:0006952 - defense response		
19260	_	OsTHI5, THI5, Osthi5	_	Thionin 5			6	LOC_Os06g31960. PR13 family.	 Tolerance and resistance	Os06g0513862	LOC_Os06g31960.1				GO:0006952 - defense response		
19261	_	OsTHI6, THI6	_	Thionin 6			6	LOC_Os06g32020. PR13 family.	 Tolerance and resistance	Os06g0513943	LOC_Os06g32020.1				GO:0002215 - defense response to nematode, GO:0009737 - response to abscisic acid stimulus, GO:0006952 - defense response, GO:0009751 - response to salicylic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000384 - nematode damage resistance	
19262	_	OsTHI7, THI7	_	Thionin 7			6	LOC_Os06g32160. PR13 family.	 Tolerance and resistance	Os06g0514100	LOC_Os06g32160.1				GO:0002215 - defense response to nematode, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response, GO:0002229 - defense response to oomycetes	TO:0000384 - nematode damage resistance, TO:0000615 - abscisic acid sensitivity	
19263	_	OsTHI8, THI8	_	Thionin 8			6	LOC_Os06g32200. PR13 family.			LOC_Os06g32200						
19264	_	OsTHI9, THI9, Osthi1, thi1	_	Thionin 9, thionin 1			6	AB072337. LOC_Os06g32240. PR13 family. OsTHI9 in Ji et al. 2015.	 Tolerance and resistance	Os06g0514800	LOC_Os06g32240.1				GO:0006952 - defense response		PO:0020033 - coleoptile 
19265	_	OsTHI20, THI20	_	Thionin 20			2	LOC_Os02g02630. PR13 family.		Os02g0118500	LOC_Os02g02630.1						
19266	_	OsTHI21, THI21	_	Thionin 21			2	LOC_Os02g02650. PR13 family.		Os02g0118700	LOC_Os02g02650.1						
19267	_	OsTHI26, THI26	_	Thionin 26			3	LOC_Os03g08710. PR13 family.		Os03g0185600	LOC_Os03g08710.2, LOC_Os03g08710.1						
19268	_	OsTHI28, THI28	_	Thionin 28			3	LOC_Os03g21880. PR13 family.		Os03g0337000	LOC_Os03g21880.1						
19269	_	OsTHI29, THI29	_	Thionin 29			3	LOC_Os03g14300. PR13 family.		Os03g0247200	LOC_Os03g14300.1						
19270	_	OsTHI30, THI30	_	Thionin 30			3	LOC_Os03g64300. PR13 family.		Os03g0860900	LOC_Os03g64300.1						
19271	_	OsTHI31, THI31	_	Thionin 31			11	LOC_Os11g15250. PR13 family.			LOC_Os11g15250						
19272	_	OsTHI32, THI32	_	Thionin 32			9	LOC_Os09g24350. PR13 family.		Os09g0409000	LOC_Os09g24350.1						
19273	_	OsTHI34, THI34	_	Thionin 34			12	LOC_Os12g26960. PR13 family.		Os12g0455000	LOC_Os12g26960.1						
19274	_	OsTHI36, THI36	_	Thionin 36			3	LOC_Os03g49270. PR13 family.		Os03g0699800	LOC_Os03g49270.1						
19275	_	OsTHI38, THI38	_	Thionin 38			3	LOC_Os03g49300. PR13 family.		Os03g0700100	LOC_Os03g49300.1						
19276	_	OsTHI39, THI39	_	Thionin 39			3	LOC_Os03g49310. PR13 family.		Os03g0700200	LOC_Os03g49310.1						
19277	_	OsTHI41, THI41	_	Thionin 41			12	LOC_Os12g27020. PR13 family.			LOC_Os12g27020						
19278	_	Osthi4, thi4	_	thionin precursor, thionin 4			6	LOC_Os06g31930. PR13 family.	 Tolerance and resistance	Os06g0513781	LOC_Os06g31930.1				GO:0006952 - defense response		
19279	_		_	thionin like peptide			7	LOC_Os07g24820. 		Os07g0429600	LOC_Os07g24820.1						
19280	_		_	thionin like peptide			7	LOC_Os07g24830.		Os07g0429700	LOC_Os07g24830.1						
19281	_		_	thionin like peptide			7	LOC_Os07g25050.		Os07g0432201	LOC_Os07g25050.1						
19282	_		_	thionin like peptide			7	LOC_Os07g25060.		Os07g0432333	LOC_Os07g25060.1						
19283	_	Osthi7, thi7	_	thionin 7			3	LOC_Os03g32160.		Os03g0436300	LOC_Os03g32160.2, LOC_Os03g32160.1						
19284	_	Osthi8, thi8	_	thionin 8			3	LOC_Os03g32240 (not found in MSU Rice Genome Annotation Project Release 7 data).									
19285	_	Osthi9, thi9	_	thionin 9			3	LOC_Os03g32350.			LOC_Os03g32350						
19286	_	Osthi10, thi10	_	thionin 10			3	LOC_Os03g32370.			LOC_Os03g32370				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
19287	_	Osthi11, thi11	_	thionin 11			3	LOC_Os03g32550.			LOC_Os03g32550				GO:0015074 - DNA integration, GO:0003676 - nucleic acid binding		
19288	_	Osthi12, thi12	_	thionin 12			3	LOC_Os03g32600.			LOC_Os03g32600				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
19289	_	OsSTA258	_	Ankyrin, Ankyrin repeat domain containing protein			11	LOC_Os11g24840. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0435800	LOC_Os11g24850.1, LOC_Os11g24840.1						PO:0009066 - anther 
19290	_		_	aminotransferase			2	up-regulated after fertilization (Abiko et al. 2013).	 Tolerance and resistance - Disease resistance	Os02g0467500	LOC_Os02g26800.1				GO:0009790 - embryonic development		
19291	_		_	GMC oxidoreductase			10		 Tolerance and resistance - Disease resistance	Os10g0474900	LOC_Os10g33460.1						
19292	_	OsACO1, ACO1	_	aconitase 1			8	LOC Os08g09200. Q6YZX6.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0191100	LOC_Os08g09200.1				GO:0005737 - cytoplasm, GO:0006097 - glyoxylate cycle, GO:0006099 - tricarboxylic acid cycle, GO:0003994 - aconitate hydratase activity, GO:0046872 - metal ion binding, GO:0009408 - response to heat, GO:0051539 - 4 iron, 4 sulfur cluster binding	TO:0000259 - heat tolerance	
19293	_	FLL1	_	FLO2-LIKE1			2			Os02g0255700	LOC_Os02g15660.1						PO:0025034 - leaf , PO:0020103 - flag leaf 
19294	_	FLL2	_	FLO2-LIKE2			7		 Vegetative organ - Leaf	Os07g0422000	LOC_Os07g23990.2, LOC_Os07g23990.1						PO:0025034 - leaf , PO:0020103 - flag leaf 
19295	_	OsSEC24, OsSEC27, SEC24, SEC27	_				2	a functional SEC24-like protein. DQ434847. LOC_Os02g56500. OsSEC27 is renamed OsSEC24 because the Os02g56500 protein functionally complements SEC24 in yeast (Li et al. 2015).	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0809500	LOC_Os02g56500.5, LOC_Os02g56500.4, LOC_Os02g56500.3, LOC_Os02g56500.2, LOC_Os02g56500.1				GO:0010447 - response to acidity, GO:0010106 - cellular response to iron ion starvation	TO:0000224 - iron sensitivity, TO:0000479 - acid sensitivity	
19296	_	OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3	_	casein kinase II alpha-subunit 3, CK2 alpha-subunit 3, CK2 alpha subunit 3			3		 Biochemical character	Os03g0207300	LOC_Os03g10940.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
19297	_	CK2beta3	_	casein kinase II beta-subunit 3, CK2 beta-subunit 3			7		 Biochemical character	Os07g0495100	LOC_Os07g31280.3, LOC_Os07g31280.2, LOC_Os07g31280.1				GO:0016036 - cellular response to phosphate starvation, GO:0019887 - protein kinase regulator activity, GO:0010966 - regulation of phosphate transport, GO:0005956 - protein kinase CK2 complex		
19298	_	OsDREPP2, DREPP2	_	developmentally regulated plasma membrane polypeptide 2			2	LC005750.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0285300	LOC_Os02g18410.1				GO:0051512 - positive regulation of unidimensional cell growth, GO:0008017 - microtubule binding, GO:0009651 - response to salt stress, GO:0046658 - anchored to plasma membrane, GO:0051716 - cellular response to stimulus, GO:0005516 - calmodulin binding, GO:0005509 - calcium ion binding, GO:0007026 - negative regulation of microtubule depolymerization	TO:0006001 - salt tolerance	PO:0000025 - root tip 
19299	_	OsDREPP1, DREPP1, RS1	_	developmentally regulated plasma membrane polypeptide 1			2	Q0JPA6. KC611097-KC611107 (O. sativa and wild rice species, partial cds).	 Vegetative organ - Root	Os01g0233000	LOC_Os01g13210.2, LOC_Os01g13210.1				GO:0046658 - anchored to plasma membrane, GO:0051716 - cellular response to stimulus		PO:0009005 - root 
19300	_	OsCNIH1, CNIH1	_	cornichon 1			6	LOC_Os06g04500. GO:0035556: intracellular signal transduction. GO:0038024: cargo receptor activity.	 Biochemical character	Os06g0136500	LOC_Os06g04500.2, LOC_Os06g04500.1				GO:0016020 - membrane, GO:0016192 - vesicle-mediated transport, GO:0016021 - integral to membrane		
19301	_	OsCNIH2, CNIH2	_	cornichon 2			12	LOC_Os12g32180. GO:0035556: intracellular signal transduction.		Os12g0506400	LOC_Os12g32180.1				GO:0016020 - membrane, GO:0006891 - intra-Golgi vesicle-mediated transport		
19302	ELF3.2	ELF3_chr.1, OsELF3.2, ELF3.2	EARLY FLOWERING 3.2	EARLY FLOWERING3.2, ELF3 homolog 2		oself3.2	1	LOC_Os01g38530. a rice ortholog of Arabidopsis gene for circadian clock component. ortholog of Arabidopsis circadian gene ELF3.		Os01g0566100 	LOC_Os01g38530.2, LOC_Os01g38530.1				GO:0007623 - circadian rhythm		
19303	_	ELF4_chr.11	_				11	a rice ortholog of Arabidopsis gene for circadian clock component.		Os11g0621500 	LOC_Os11g40610.5, LOC_Os11g40610.4, LOC_Os11g40610.3, LOC_Os11g40610.2, LOC_Os11g40610.1				GO:0007623 - circadian rhythm		
19304	_	ELF4_chr.8	_				8	a rice ortholog of Arabidopsis gene for circadian clock component.		Os08g0366200 	LOC_Os08g27860.1				GO:0007623 - circadian rhythm		
19305	_	ELF4_chr.3	_				3	a rice ortholog of Arabidopsis gene for circadian clock component.		Os03g0410300 	LOC_Os03g29680.1				GO:0007623 - circadian rhythm		
19306	_	OsSTA28	_		_		1	LOC_Os01g50470. a mature anther-preferentially expressed gene. OsSTA28 might be a regulator of pollen fertility by influencing the unknown metabolic materials in rice.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	 Os01g0700200  	LOC_Os01g50470.1				GO:0046872 - metal ion binding	TO:0000053 - pollen sterility	PO:0009066 - anther , PO:0025281 - pollen , PO:0000002 - anther wall 
19307	_	OsSTA99	_		_		3	LOC_Os03g23030. a mature anther-preferentially expressed gene. OsSTA99 may controll pollen germination and pollen tube growth by regulating the expression of Ca2+ and pectinesterase relative genes in rice.	 Reproductive organ - Spikelet, flower, glume, awn	 Os03g0353600  	LOC_Os03g23030.1				GO:0009846 - pollen germination, GO:0009860 - pollen tube growth		PO:0009066 - anther , PO:0025281 - pollen , PO:0000002 - anther wall 
19308	_	OsSTA208	_		_		8	LOC_Os08g15090. a mature anther-preferentially expressed gene. Down-regulating expression of OsSTA208 in anther wall might interrupt cross-talks between pollen and anther wall, which could be critical for pollen fertility. It was possible that OsSTA208 participated in stress response in the anther wall for regulating pollen fertility.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	 Os08g0249600  	LOC_Os08g15090.1				GO:0004143 - diacylglycerol kinase activity, GO:0003951 - NAD+ kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	TO:0000187 - anther color, TO:0000053 - pollen sterility	PO:0009066 - anther , PO:0000002 - anther wall 
19309	CYP96B2	OsCYP96B2	P-450 96B2	Cytochrome P450 96B2	CYTOCHROME P450 96B2		3	LOC_Os03g04630. EAZ25521.	 Biochemical character	Os03g0139600	LOC_Os03g04630.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
19310	CYP96B5	OsCYP96B5	P-450 96B5	Cytochrome P450 96B5	CYTOCHROME P450 96B5		3	LOC_Os03g04660. ABF93894.	 Biochemical character	Os03g0140200	LOC_Os03g04660.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
19311	CYP96B9	OsCYP96B9	P-450 96B9	Cytochrome P450 96B9	CYTOCHROME P450 96B9		3	LOC_Os03g04640. ABF93892.	 Biochemical character		LOC_Os03g04640				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity		
19312	CYP96B6	OsCYP96B6	P-450 96B6	Cytochrome P450 96B6	CYTOCHROME P450 96B6		3	LOC_Os03g04530. NP_001048908.	 Biochemical character	Os03g0138200	LOC_Os03g04530.1				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity		
19313	CYP96B7	OsCYP96B7	P-450 96B7	Cytochrome P450 96B7	CYTOCHROME P450 96B7				 Biochemical character								
19314	CYP96B8	OsCYP96B8	P-450 96B8	Cytochrome P450 96B8	CYTOCHROME P450 96B8		8	LOC_Os08g16260. NP_001061394.	 Biochemical character	Os08g0262500 	LOC_Os08g16260.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
19315	CYP96B10	OsCYP96B10	P-450 96B10	Cytochrome P450 96B10	CYTOCHROME P450 96B10			EAZ42091.	 Biochemical character						GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
19316	CYP96D1	OsCYP96D1	P-450 96D1	Cytochrome P450 96D1	CYTOCHROME P450 96D1			BAA99522.	 Biochemical character						GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
19317	CYP96D2	OsCYP96D2	P-450 96D2	Cytochrome P450 96D2	CYTOCHROME P450 96D2		5	LOC_Os05g08850. EEC78633.	 Biochemical character	Os05g0181200	LOC_Os05g08850.1				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity		
19318	CYP96E1	OsCYP96E1	P-450 96E1	Cytochrome P450 96E1	CYTOCHROME P450 96E1		1	LOC_Os01g08810.	 Biochemical character	Os01g0183600 	LOC_Os01g08810.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
19320	_	OsSTA2, STA2, OsLPR5, LPR5	_	Low Phosphate Root5, Low Phosphate Root 5			1	a mature anther-preferentially expressed gene. LOC_Os01g03640. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0127200	LOC_Os01g03640.1				GO:0016036 - cellular response to phosphate starvation	TO:0000465 - mineral and ion content related trait	PO:0009066 - anther , PO:0009005 - root 
19321	_	OsSTA4, OsRhmbd1, RHMBD1	_	Rhomboid 1, RHOMBOID 1			1	a mature anther-preferentially expressed gene. LOC_Os01g05430. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0147300	LOC_Os01g05430.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		PO:0009066 - anther 
19322	_	OsSTA5	_				1	a mature anther-preferentially expressed gene. LOC_Os01g08340	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0178700	LOC_Os01g08340.1						PO:0009066 - anther 
19323	_	OsSTA6	_				1	a mature anther-preferentially expressed gene. LOC_Os01g09730	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0193400	LOC_Os01g09730.2, LOC_Os01g09730.1						PO:0009066 - anther 
19324	_	OsSTA10	_				1	a mature anther-preferentially expressed gene. LOC_Os01g16320	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0268700	LOC_Os01g16320.1						PO:0009066 - anther 
19325	_	OsSTA11, OsRFP	_	RING Finger Protein			1	a mature anther-preferentially expressed gene. LOC_Os01g16950.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0276600	LOC_Os01g16950.1						PO:0009066 - anther 
19326	_	OsSTA13	_				1	a mature anther-preferentially expressed gene. LOC_Os01g23370	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0335550	LOC_Os01g23370.1						PO:0009066 - anther 
19327	_	OsSTA15	_				1	a mature anther-preferentially expressed gene. LOC_Os01g25440	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0356500	LOC_Os01g25440.1						PO:0009066 - anther 
19328	_	OsSTA16	_				1	a mature anther-preferentially expressed gene. LOC_Os01g36760	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0548000	LOC_Os01g36760.1, LOC_Os01g36740.1						PO:0009066 - anther 
19329	_	OsSTA17	_				1	a mature anther-preferentially expressed gene. LOC_Os01g40150	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0583700	LOC_Os01g40150.1						PO:0009066 - anther 
19330	_	OsSTA18	_				1	a mature anther-preferentially expressed gene. LOC_Os01g40400	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0586400	LOC_Os01g40400.1						PO:0009066 - anther 
19331	_	OsSTA22	_				1	a mature anther-preferentially expressed gene. LOC_Os01g41930	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0603800	LOC_Os01g41930.1						PO:0009066 - anther 
19332	_	OsSTA23	_				1	a mature anther-preferentially expressed gene. LOC_Os01g41970	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os01g41970						PO:0009066 - anther 
19333	_	OsSTA24	_				1	a mature anther-preferentially expressed gene. LOC_Os01g42024	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0604900	LOC_Os01g42024.1						PO:0009066 - anther 
19334	_	OsSTA25	_				1	a mature anther-preferentially expressed gene. LOC_Os01g46250	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0651200	LOC_Os01g46250.1						PO:0009066 - anther 
19335	_	OsSTA26	_				1	a mature anther-preferentially expressed gene. LOC_Os01g47100	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0660500	LOC_Os01g47100.1						PO:0009066 - anther 
19336	_	OsSTA27	_				1	a mature anther-preferentially expressed gene. LOC_Os01g48540	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0677000	LOC_Os01g48540.1						PO:0009066 - anther 
19337	_	OsSTA30	_				1	a mature anther-preferentially expressed gene. LOC_Os01g51754	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0715400	LOC_Os01g51754.4, LOC_Os01g51754.3, LOC_Os01g51754.2, LOC_Os01g51754.1						PO:0009066 - anther 
19338	_	OsSTA31	_				1	a mature anther-preferentially expressed gene. LOC_Os01g52270	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0720800	LOC_Os01g52270.1						PO:0009066 - anther 
19339	_	OsSTA32	_				1	a mature anther-preferentially expressed gene. LOC_Os01g54520	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0749000	LOC_Os01g54520.2, LOC_Os01g54520.1						PO:0009066 - anther 
19340	_	OsSTA33	_				1	a mature anther-preferentially expressed gene. LOC_Os01g55850	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0764200	LOC_Os01g55850.1						PO:0009066 - anther 
19341	_	OsSTA34	_				1	a mature anther-preferentially expressed gene. LOC_Os01g56560	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0772400	LOC_Os01g56560.1						PO:0009066 - anther 
19342	_	OsSTA35	_				1	a mature anther-preferentially expressed gene. LOC_Os01g56764	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0774500	LOC_Os01g56764.1						PO:0009066 - anther 
19343	_	OsSTA36	_				1	a mature anther-preferentially expressed gene. LOC_Os01g62950	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0848700	LOC_Os01g62950.1						PO:0009066 - anther 
19344	_	OsSTA37	_				1	a mature anther-preferentially expressed gene. LOC_Os01g65860	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0881100	LOC_Os01g65860.1						PO:0009066 - anther 
19345	_	OsSTA38	_				1	a mature anther-preferentially expressed gene. LOC_Os01g66330	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0886600	LOC_Os01g66330.1						PO:0009066 - anther 
19346	_	OsSTA39	_				1	a mature anther-preferentially expressed gene. LOC_Os01g66700	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0891000	LOC_Os01g66700.1						PO:0009066 - anther 
19347	_	OsSTA40	_				1	a mature anther-preferentially expressed gene. LOC_Os01g66860	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0892800	LOC_Os01g66860.4, LOC_Os01g66860.3, LOC_Os01g66860.2						PO:0009066 - anther 
19348	_	OsSTA41, STA41	_				1	a mature anther-preferentially expressed gene. LOC_Os01g70120	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0925600	LOC_Os01g70120.2, LOC_Os01g70120.1					TO:0000207 - plant height	PO:0009066 - anther 
19349	_	OsSTA43	_				1	a mature anther-preferentially expressed gene. LOC_Os01g71040	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0936700	LOC_Os01g71040.1						PO:0009066 - anther 
19350	_	OsSTA44	_				1	a mature anther-preferentially expressed gene. LOC_Os01g71800	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0946300	LOC_Os01g71800.1						PO:0009066 - anther 
19351	_	OsSTA45	_				1	a mature anther-preferentially expressed gene. LOC_Os01g74000	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0971600	LOC_Os01g74000.1						PO:0009066 - anther 
19352	_	OsSTA48	_				2	a mature anther-preferentially expressed gene. LOC_Os02g06510	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0160100	LOC_Os02g06510.1						PO:0009066 - anther 
19353	_	OsSTA49	_				2	a mature anther-preferentially expressed gene. LOC_Os02g08240	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0179000	LOC_Os02g08250.1, LOC_Os02g08240.1						PO:0009066 - anther 
19354	_	OsSTA50	_				2	a mature anther-preferentially expressed gene. LOC_Os02g09530	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0188500	LOC_Os02g09530.1						PO:0009066 - anther 
19355	_	OsSTA52	_				2	a mature anther-preferentially expressed gene. LOC_Os02g10000	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0193400	LOC_Os02g10000.1						PO:0009066 - anther 
19356	_	OsSTA53	_				2	a mature anther-preferentially expressed gene. LOC_Os02g10440	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0197900	LOC_Os02g10440.1						PO:0009066 - anther 
19357	_	OsSTA54	_				2	a mature anther-preferentially expressed gene. LOC_Os02g10630	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0199800	LOC_Os02g10630.1						PO:0009066 - anther 
19358	_	OsSTA55	_				2	a mature anther-preferentially expressed gene. LOC_Os02g13580	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0229600	LOC_Os02g13580.1, LOC_Os02g13570.1						PO:0009066 - anther 
19359	_	OsSTA56	_				2	a mature anther-preferentially expressed gene. LOC_Os02g14710	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0244000	LOC_Os02g14710.1						PO:0009066 - anther 
19360	_	OsSTA57	_				2	a mature anther-preferentially expressed gene. LOC_Os02g17630	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g17630						PO:0009066 - anther 
19361	_	OsSTA58	_				2	a mature anther-preferentially expressed gene. LOC_Os02g20530	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0308300	LOC_Os02g20530.1						PO:0009066 - anther 
19362	_	OsSTA59	_				2	a mature anther-preferentially expressed gene. LOC_Os02g31950	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g31950						PO:0009066 - anther 
19363	_	OsSTA60	_				2	a mature anther-preferentially expressed gene. LOC_Os02g32020	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g32020						PO:0009066 - anther 
19364	_	OsSTA61	_				2	a mature anther-preferentially expressed gene. LOC_Os02g32060	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0520100	LOC_Os02g32060.3, LOC_Os02g32060.2, LOC_Os02g32060.1						PO:0009066 - anther 
19365	_	OsSTA62	_				2	a mature anther-preferentially expressed gene. LOC_Os02g33410	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g33410						PO:0009066 - anther 
19366	_	OsSTA63	_				2	a mature anther-preferentially expressed gene. LOC_Os02g33740	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0541900	LOC_Os02g33740.1						PO:0009066 - anther 
19367	WSL4	OsSTA65, STA65	WHITE STRIPE LEAF 4	white stripe leaf4		wsl4	2	a mature anther-preferentially expressed gene. LOC_Os02g35750	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0565400	LOC_Os02g35750.3, LOC_Os02g35750.2, LOC_Os02g35750.1				GO:0009451 - RNA modification, GO:0042644 - chloroplast nucleoid, GO:0048366 - leaf development, GO:0004519 - endonuclease activity, GO:0000373 - Group II intron splicing, GO:0009409 - response to cold, GO:0009658 - chloroplast organization, GO:0003723 - RNA binding	TO:0000303 - cold tolerance, TO:0000655 - leaf development trait, TO:0000069 - variegated leaf, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	PO:0009066 - anther , PO:0025034 - leaf , PO:0001050 - leaf development stage 
19368	_	OsSTA67	_				2	a mature anther-preferentially expressed gene. LOC_Os02g42280	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0634100	LOC_Os02g42280.1						PO:0009066 - anther 
19369	_	OsSTA68	_				2	a mature anther-preferentially expressed gene. LOC_Os02g43840	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0655500	LOC_Os02g43840.1						PO:0009066 - anther 
19370	_	OsSTA69	_				2	a mature anther-preferentially expressed gene. LOC_Os02g44270	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0661500	LOC_Os02g44270.2, LOC_Os02g44270.1						PO:0009066 - anther 
19371	_	OsSTA71, OsARID2, ARID2	_	AT-rich Interaction Domain-containing protein 2			2	a mature anther-preferentially expressed gene. LOC_Os02g48370. ARID protein, Hsp20 subfamily.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0714300	LOC_Os02g48370.2, LOC_Os02g48370.1				GO:0003677 - DNA binding		PO:0009066 - anther 
19372	_	OsSTA72	_				2	a mature anther-preferentially expressed gene. LOC_Os02g49260	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0724500	LOC_Os02g49260.1						PO:0009066 - anther 
19374	_	OsSTA74	_				2	a mature anther-preferentially expressed gene. LOC_Os02g49790	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0730600	LOC_Os02g49790.1						PO:0009066 - anther 
19375	_	OsSTA76	_				2	a mature anther-preferentially expressed gene. LOC_Os02g50220	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0735000	LOC_Os02g50220.1						PO:0009066 - anther 
19376	_	OsSTA78	_				2	a mature anther-preferentially expressed gene. LOC_Os02g51730	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0753500	LOC_Os02g51730.1						PO:0009066 - anther 
19377	_	OsSTA79	_				2	a mature anther-preferentially expressed gene. LOC_Os02g52640	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0764400	LOC_Os02g52640.1						PO:0009066 - anther 
19378	_	OsSTA80	_	SRL2-like gene, semi-rolled leaf 2-like gene			2	a mature anther-preferentially expressed gene. LOC_Os02g53990.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0780500	LOC_Os02g53990.1						PO:0009066 - anther 
19379	_	OsSTA81	_				2	a mature anther-preferentially expressed gene. LOC_Os02g54100	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0781900	LOC_Os02g54100.1						PO:0009066 - anther 
19380	_	OsSTA82, STA82, OsPOP6, POP6	_	Prolyl Oligopeptidase 6, PROLYL OLIGOPEPTIDASE 6			2	a mature anther-preferentially expressed gene. LOC_Os02g55330. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0796600	LOC_Os02g55330.2, LOC_Os02g55330.1						PO:0009066 - anther 
19381	_	OsSTA83	_				2	a mature anther-preferentially expressed gene. LOC_Os02g57790	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0823900	LOC_Os02g57790.1						PO:0009066 - anther 
19382	_	OsSTA84	_				2	a mature anther-preferentially expressed gene. LOC_Os02g58330	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0830000	LOC_Os02g58330.1						PO:0009066 - anther 
19383	CHX1	OsSTA85, STA85, OsCHX01, CHX01, OsCHX1	CATION/H+ EXCHANGER  1	cation/H+ exchanger  1	CATION/H+ EXCHANGER  1		2	LOC_Os02g58660. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0833500	LOC_Os02g58660.2, LOC_Os02g58660.1				GO:0006885 - regulation of pH, GO:0015299 - solute:hydrogen antiporter activity, GO:0015672 - monovalent inorganic cation transport, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system		PO:0009066 - anther , PO:0009046 - flower 
19384	_	OsSTA87	_				3	a mature anther-preferentially expressed gene. LOC_Os03g03270	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0124100	LOC_Os03g03270.2, LOC_Os03g03270.1						PO:0009066 - anther 
19385	_	OsSTA89, STA89, OsDUF810.1, DUF810.1	_	domains of unknown function 810.1, DUF810 family member 1			3	a mature anther-preferentially expressed gene. LOC_Os03g04560	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0138600	LOC_Os03g04560.1				GO:0009570 - chloroplast stroma		PO:0009066 - anther 
19386	_	OsSTA90	_				3	a mature anther-preferentially expressed gene. LOC_Os03g06890	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0164800	LOC_Os03g06890.1						PO:0009066 - anther 
19387	_	OsSTA91	_				3	a mature anther-preferentially expressed gene. LOC_Os03g07110	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0167200	LOC_Os03g07110.3, LOC_Os03g07110.2, LOC_Os03g07110.1						PO:0009066 - anther 
19388	_	OsSTA92	_				3	a mature anther-preferentially expressed gene. LOC_Os03g07970	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0176800	LOC_Os03g07970.1						PO:0009066 - anther 
19389	_	OsSTA93	_				3	a mature anther-preferentially expressed gene. LOC_Os03g09160	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0191800	LOC_Os03g09160.1						PO:0009066 - anther 
19390	_	OsSTA94	_				3	a mature anther-preferentially expressed gene. LOC_Os03g10550	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os03g10550						PO:0009066 - anther 
19391	_	OsSTA95	_				3	a mature anther-preferentially expressed gene. LOC_Os03g16840	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os03g16840						PO:0009066 - anther 
19392	_	OsSTA96	_				3	a mature anther-preferentially expressed gene. LOC_Os03g17250	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0281100	LOC_Os03g17250.1						PO:0009066 - anther 
19393	_	OsSTA100	_				3	a mature anther-preferentially expressed gene. LOC_Os03g23940	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0355500	LOC_Os03g23940.1						PO:0009066 - anther 
19394	_	OsSTA101	_				3	a mature anther-preferentially expressed gene. LOC_Os03g25490	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0371000	LOC_Os03g25490.2, LOC_Os03g25490.1						PO:0009066 - anther 
19395	_	OsSTA103	_				3	a mature anther-preferentially expressed gene. LOC_Os03g27200	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os03g27200						PO:0009066 - anther 
19396	_	OsSTA104	_				3	a mature anther-preferentially expressed gene. LOC_Os03g41600	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0612400	LOC_Os03g41600.1						PO:0009066 - anther 
19397	_	OsSTA105	_				3	a mature anther-preferentially expressed gene. LOC_Os03g42290	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0620500	LOC_Os03g42290.1						PO:0009066 - anther 
19398	_	OsSTA106	_				3	a mature anther-preferentially expressed gene. LOC_Os03g43350	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0632732	LOC_Os03g43350.1						PO:0009066 - anther 
19399	_	OsSTA108	_				3	a mature anther-preferentially expressed gene. LOC_Os03g45930	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0661500	LOC_Os03g45930.1						PO:0009066 - anther 
19400	_	OsSTA109	_				3	a mature anther-preferentially expressed gene. LOC_Os03g47050	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0673600	LOC_Os03g47050.1						PO:0009066 - anther 
19401	_	OsSTA110	_				3	a mature anther-preferentially expressed gene. LOC_Os03g49280	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0699950	LOC_Os03g49280.1						PO:0009066 - anther 
19402	_	OsSTA111	_				3	a mature anther-preferentially expressed gene. LOC_Os03g49590	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0702900	LOC_Os03g49590.1						PO:0009066 - anther 
19403	_	OsSTA112	_				3	a mature anther-preferentially expressed gene. LOC_Os03g51210	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0722000	LOC_Os03g51210.1						PO:0009066 - anther 
19404	_	OsSTA113	_				3	a mature anther-preferentially expressed gene. LOC_Os03g51990	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0729800	LOC_Os03g51990.1						PO:0009066 - anther 
19405	_	OsSTA114	_				3	a mature anther-preferentially expressed gene. LOC_Os03g53410	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0745700	LOC_Os03g53410.1						PO:0009066 - anther 
19406	_	OsSTA115	_				3	a mature anther-preferentially expressed gene. LOC_Os03g58190	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0796400	LOC_Os03g58190.1						PO:0009066 - anther 
19407	_	OsSTA116	_				4	a mature anther-preferentially expressed gene. LOC_Os04g17120	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os04g17120						PO:0009066 - anther 
19408	_	OsSTA118	_				4	a mature anther-preferentially expressed gene. LOC_Os04g21570	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0283600	LOC_Os04g21570.1						PO:0009066 - anther 
19409	_	OsSTA119	_				4	a mature anther-preferentially expressed gene. LOC_Os04g22990	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0296034	LOC_Os04g22990.1						PO:0009066 - anther 
19410	_	OsSTA120	_				4	a mature anther-preferentially expressed gene. LOC_Os04g26834	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0337000	LOC_Os04g26834.1						PO:0009066 - anther 
19411	_	OsSTA121	_				4	a mature anther-preferentially expressed gene. LOC_Os04g28020	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0347800	LOC_Os04g28020.1						PO:0009066 - anther 
19412	_	OsSTA122	_				4	a mature anther-preferentially expressed gene. LOC_Os04g32190	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0392300	LOC_Os04g32190.1						PO:0009066 - anther 
19413	_	OsSTA123	_				4	a mature anther-preferentially expressed gene. LOC_Os04g32210	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0392500	LOC_Os04g32210.1						PO:0009066 - anther 
19414	_	OsSTA124	_				4	a mature anther-preferentially expressed gene. LOC_Os04g40150	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0477500	LOC_Os04g40150.2, LOC_Os04g40150.1						PO:0009066 - anther 
19415	_	OsSTA126	_				4	a mature anther-preferentially expressed gene. LOC_Os04g41200	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0489100	LOC_Os04g41200.1						PO:0009066 - anther 
19416	_	OsSTA127, STA127	_				4	a mature anther-preferentially expressed gene. LOC_Os04g44090	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0521600	LOC_Os04g44090.1						PO:0009066 - anther 
19417	_	OsSTA128	_				4	a mature anther-preferentially expressed gene. LOC_Os04g46079	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0545100	LOC_Os04g46079.1						PO:0009066 - anther 
19418	_	OsSTA129	_				4	a mature anther-preferentially expressed gene. LOC_Os04g46670	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0552400	LOC_Os04g46670.1						PO:0009066 - anther 
19419	_	OsSTA130	_				4	a mature anther-preferentially expressed gene. LOC_Os04g47110	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0558200	LOC_Os04g47110.1						PO:0009066 - anther 
19420	_	OsSTA131	_				4	a mature anther-preferentially expressed gene. LOC_Os04g48700	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0576300	LOC_Os04g48700.1						PO:0009066 - anther 
19421	_	OsSTA132	_				4	a mature anther-preferentially expressed gene. LOC_Os04g52950	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0620600	LOC_Os04g52950.1						PO:0009066 - anther 
19422	_	OsSTA133	_				4	a mature anther-preferentially expressed gene. LOC_Os04g53430	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0625700	LOC_Os04g53430.1						PO:0009066 - anther 
19423	_	OsSTA134	_				4	a mature anther-preferentially expressed gene. LOC_Os04g53830	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0630600	LOC_Os04g53830.1						PO:0009066 - anther 
19424	_	OsSTA135, STA135, OsODD21, ODD21, 2-ODD21, Os2-ODD21, Os2ODD21	_	2-oxoglutarate-dependent dioxygenase 21	_		4	LOC_Os04g57180. a mature anther-preferentially expressed gene. melatonin 2-hydroxylase. GO:0080167: response to karrikin. 	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0667400	LOC_Os04g57180.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		PO:0009066 - anther 
19425	_	OsSTA136	_				4	a mature anther-preferentially expressed gene. LOC_Os04g58100	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0677400	LOC_Os04g58100.1						PO:0009066 - anther 
19426	_	OsSTA137	_				4	a mature anther-preferentially expressed gene. LOC_Os04g58380	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0680300	LOC_Os04g58380.1						PO:0009066 - anther 
19427	_	OsSTA138	_				5	a mature anther-preferentially expressed gene. LOC_Os05g03320	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0124000	LOC_Os05g03320.1						PO:0009066 - anther 
19428	_	OsSTA139	_				5	a mature anther-preferentially expressed gene. LOC_Os05g05640	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0149000	LOC_Os05g05640.1						PO:0009066 - anther 
19429	_	OsSTA140	_				5	a mature anther-preferentially expressed gene. LOC_Os05g05760	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0150100	LOC_Os05g05760.1						PO:0009066 - anther 
19430	_	OsSTA141	_				5	a mature anther-preferentially expressed gene. LOC_Os05g08390	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0176300	LOC_Os05g08390.1						PO:0009066 - anther 
19431	_	OsSTA142	_				5	a mature anther-preferentially expressed gene. LOC_Os05g20620	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os05g20620						PO:0009066 - anther 
19432	_	OsSTA143, STA143	_				5	a mature anther-preferentially expressed gene. LOC_Os05g20914	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0285900							PO:0009066 - anther 
19433	_	OsSTA144, STA144	_				5	a mature anther-preferentially expressed gene. LOC_Os05g23560	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os05g23560.1						PO:0009066 - anther 
19434	_	OsSTA145, STA145	_				5	a mature anther-preferentially expressed gene. LOC_Os05g26070	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0327000							PO:0009066 - anther 
19436	_	OsSTA148	_				5	a mature anther-preferentially expressed gene. LOC_Os05g31720	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0382000	LOC_Os05g31720.1						PO:0009066 - anther 
19437	OSCA1.3	OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.3	Hyperosmolality-gated calcium-permeable channel 1.3, DUF221 Domain containing Protein 5	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.3		5	a mature anther-preferentially expressed gene. LOC_Os05g32720. KJ920373. OSCA1 homologue. Oryza brachyantha ortholog: ObOSCA1.3, Oryza glaberrima ortholog: OgOSCA1.3.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0393800	LOC_Os05g32720.1				GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009066 - anther , PO:0000084 - plant sperm cell 
19438	_	OsSTA150	_				5	a mature anther-preferentially expressed gene. LOC_Os05g37150	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0443700	LOC_Os05g37150.2						PO:0009066 - anther 
19439	_	OsSTA151	_				5	a mature anther-preferentially expressed gene. LOC_Os05g37880	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0451900	LOC_Os05g37880.1						PO:0009066 - anther 
19440	_	OsSTA152	_				5	a mature anther-preferentially expressed gene. LOC_Os05g38790	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0463300	LOC_Os05g38790.1						PO:0009066 - anther 
19441	_	OsSTA153	_				5	a mature anther-preferentially expressed gene. LOC_Os05g40310	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0481700	LOC_Os05g40310.1						PO:0009066 - anther 
19442	_	OsSTA155	_				5	a mature anther-preferentially expressed gene. LOC_Os05g41150	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0490400	LOC_Os05g41150.1						PO:0009066 - anther 
19443	_	OsSTA157	_				5	a mature anther-preferentially expressed gene. LOC_Os05g42200	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0501350	LOC_Os05g42200.1						PO:0009066 - anther 
19444	_	OsSTA158	_				5	a mature anther-preferentially expressed gene. LOC_Os05g46030	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0537200/Os05g0537300	LOC_Os05g46030.1						PO:0009066 - anther 
19445	_	OsSTA160	_				5	a mature anther-preferentially expressed gene. LOC_Os05g49310	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0568200	LOC_Os05g49310.1						PO:0009066 - anther 
19446	_	OsSTA161	_				5	a mature anther-preferentially expressed gene. LOC_Os05g50830	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0585800	LOC_Os05g50830.2, LOC_Os05g50830.1						PO:0009066 - anther 
19447	_	OsSTA163	_				6	a mature anther-preferentially expressed gene. LOC_Os06g01780	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0107000	LOC_Os06g01780.1						PO:0009066 - anther 
19448	_	OsSTA164	_				6	a mature anther-preferentially expressed gene. LOC_Os06g02450	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0114900	LOC_Os06g02450.1						PO:0009066 - anther 
19449	_	OsSTA165	_				6	a mature anther-preferentially expressed gene. LOC_Os06g03170 (The locus or model name was not found in MSU Rice Genome Annotation Project Release 7 data). 	 Reproductive organ - Spikelet, flower, glume, awn								PO:0009066 - anther 
19450	_	OsSTA166	_				6	a mature anther-preferentially expressed gene. LOC_Os06g03210	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0122900	LOC_Os06g03210.1						PO:0009066 - anther 
19451	_	OsSTA167	_				6	a mature anther-preferentially expressed gene. LOC_Os06g03630	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0126400	LOC_Os06g03630.1						PO:0009066 - anther 
19452	_	OsSTA168	_				6	a mature anther-preferentially expressed gene. LOC_Os06g05710	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0150000	LOC_Os06g05710.1						PO:0009066 - anther 
19453	_	OsSTA169	_				6	a mature anther-preferentially expressed gene. LOC_Os06g06430	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0158800	LOC_Os06g06430.2, LOC_Os06g06430.1						PO:0009066 - anther 
19456	_	OsSTA173	_				6	a mature anther-preferentially expressed gene. LOC_Os06g10140.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0202800	LOC_Os06g10140.1						PO:0009066 - anther 
19457	_	OsSTA174, RHS10	_	rice RHS10 ortholog			6	a mature anther-preferentially expressed gene. LOC_Os06g29080.  a rice ortholog of Arabidopsis RHS10 (ROOT HAIR SPECIFIC 10). Extensin family protein.	 Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0486000	LOC_Os06g29080.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048767 - root hair elongation, GO:0016021 - integral to membrane	TO:0002665 - root hair length	PO:0009066 - anther , PO:0007519 - 5 root hair formation stage 
19458	_	OsSTA175	_				6	a mature anther-preferentially expressed gene. LOC_Os06g33460	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0526200	LOC_Os06g33460.1						PO:0009066 - anther 
19459	_	OsSTA176	_				6	a mature anther-preferentially expressed gene. LOC_Os06g45050	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0661400							PO:0009066 - anther 
19460	_	OsSTA177	_				6	a mature anther-preferentially expressed gene. LOC_Os06g45240	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0663000	LOC_Os06g45240.1						PO:0009066 - anther 
19461	_	OsSTA178, STA178	_				6	a mature anther-preferentially expressed gene. LOC_Os06g47520.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0690100							PO:0009066 - anther 
19462	_	OsSTA179	_				6	a mature anther-preferentially expressed gene. LOC_Os06g48790	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os06g48790						PO:0009066 - anther 
19463	_	OsSTA180	_				6	a mature anther-preferentially expressed gene. LOC_Os06g49850	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os06g49850						PO:0009066 - anther 
19464	_	OsSTA181	_				6	a mature anther-preferentially expressed gene. LOC_Os06g49860	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0712800	LOC_Os06g49860.1						PO:0009066 - anther 
19465	_	OsSTA184	_				7	a mature anther-preferentially expressed gene. LOC_Os07g01230	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0102200	LOC_Os07g01230.1						PO:0009066 - anther 
19466	_	OsSTA185	_				7	a mature anther-preferentially expressed gene. LOC_Os07g02430	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0115200	LOC_Os07g02430.1						PO:0009066 - anther 
19467	_	OsSTA186	_				7	a mature anther-preferentially expressed gene. LOC_Os07g04520	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0137800	LOC_Os07g04520.1						PO:0009066 - anther 
19468	_	OsSTA187	_				7	a mature anther-preferentially expressed gene. LOC_Os07g04980	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os07g04980						PO:0009066 - anther 
19469	_	OsSTA189	_				7	a mature anther-preferentially expressed gene. LOC_Os07g07080	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0165200	LOC_Os07g07080.1						PO:0009066 - anther 
19470	_	OsSTA190	_				7	a mature anther-preferentially expressed gene. LOC_Os07g07130	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os07g07130						PO:0009066 - anther 
19471	_	OsSTA191	_				7	a mature anther-preferentially expressed gene. LOC_Os07g07910	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0175400	LOC_Os07g07910.1						PO:0009066 - anther 
19472	_	OsSTA194	_				7	a mature anther-preferentially expressed gene. LOC_Os07g27750	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0461500	LOC_Os07g27750.1						PO:0009066 - anther 
19473	_	OsSTA195	_				7	a mature anther-preferentially expressed gene. LOC_Os07g31070	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0492900	LOC_Os07g31070.1						PO:0009066 - anther 
19474	_	OsSTA196	_				7	a mature anther-preferentially expressed gene. LOC_Os07g31830	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0501700	LOC_Os07g31830.1						PO:0009066 - anther 
19475	_	OsSTA197	_				7	a mature anther-preferentially expressed gene. LOC_Os07g32920	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0513400	LOC_Os07g32920.1						PO:0009066 - anther 
19476	_	OsSTA198, STA198, OsFH11, FH11	_	formin homology 11, forming family protein 11, FH2 protein 11, FH2 domain protein 11			7	LOC_Os07g36150. a mature anther-preferentially expressed gene. Q0D5P3.	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0545500	LOC_Os07g36150.1				GO:0016020 - membrane, GO:0016021 - integral to membrane		PO:0009066 - anther 
19477	_	OsSTA200	_				7	a mature anther-preferentially expressed gene. LOC_Os07g45260	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0646800	LOC_Os07g45260.1						PO:0009066 - anther 
19478	_	OsSTA201	_	beta-amylase			7	a mature anther-preferentially expressed gene. LOC_Os07g47120. GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0667100	LOC_Os07g47120.1				GO:0000272 - polysaccharide catabolic process, GO:0016161 - beta-amylase activity		PO:0009066 - anther 
19479	_	OsSTA203	_				8	a mature anther-preferentially expressed gene. LOC_Os08g03600	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0130000	LOC_Os08g03600.1						PO:0009066 - anther 
19480	_	OsSTA204	_				8	a mature anther-preferentially expressed gene. LOC_Os08g04000	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os08g04000						PO:0009066 - anther 
19481	_	OsSTA205	_				8	a mature anther-preferentially expressed gene. LOC_Os08g05340	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0149000	LOC_Os08g05340.1						PO:0009066 - anther 
19482	_	OsSTA206	_				8	a mature anther-preferentially expressed gene. LOC_Os08g09930	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0199200	LOC_Os08g09930.1						PO:0009066 - anther 
19483	_	OsSTA209	_				8	a mature anther-preferentially expressed gene. LOC_Os08g23460	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0324200	LOC_Os08g23460.1						PO:0009066 - anther 
19484	_	OsSTA210	_				8	a mature anther-preferentially expressed gene. LOC_Os08g26370	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0352250	LOC_Os08g26370.1						PO:0009066 - anther 
19485	_	OsSTA213	_				8	a mature anther-preferentially expressed gene. LOC_Os08g31769	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0411500	LOC_Os08g31769.2, LOC_Os08g31769.1						PO:0009066 - anther 
19486	_	OsSTA214	_				8	a mature anther-preferentially expressed gene. LOC_Os08g35560	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0457000	LOC_Os08g35560.1						PO:0009066 - anther 
19487	_	OsSTA215	_				8	a mature anther-preferentially expressed gene. LOC_Os08g35770	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os08g35770						PO:0009066 - anther 
19488	_	OsSTA216	_				8	a mature anther-preferentially expressed gene. LOC_Os08g38740	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0496200	LOC_Os08g38740.1						PO:0009066 - anther 
19489	_	OsSTA217	_				8	a mature anther-preferentially expressed gene. LOC_Os08g42390	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0535700	LOC_Os08g42390.1						PO:0009066 - anther 
19490	_	OsSTA218	_				8	a mature anther-preferentially expressed gene. LOC_Os08g42480	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0537001	LOC_Os08g42480.1						PO:0009066 - anther 
19491	_	OsSTA219	_				9	a mature anther-preferentially expressed gene. LOC_Os09g04300	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0129400	LOC_Os09g04300.4, LOC_Os09g04300.3, LOC_Os09g04300.2, LOC_Os09g04300.1						PO:0009066 - anther 
19492	_	OsSTA220	_				9	a mature anther-preferentially expressed gene. LOC_Os09g09630	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g09630						PO:0009066 - anther 
19493	_	OsSTA221	_				9	a mature anther-preferentially expressed gene. LOC_Os09g13440	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g13440						PO:0009066 - anther 
19494	_	OsSTA222	_				9	a mature anther-preferentially expressed gene. LOC_Os09g16580	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g16580						PO:0009066 - anther 
19495	_	OsSTA223, STA223	_				9	a mature anther-preferentially expressed gene. LOC_Os09g19550	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0359700	LOC_Os09g19550.1						PO:0009066 - anther 
19496	_	OsSTA224, STA224	_				9	a mature anther-preferentially expressed gene. LOC_Os09g19950.	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0364100	LOC_Os09g19550.1						PO:0009066 - anther 
19497	_	OsSTA225	_				9	a mature anther-preferentially expressed gene. LOC_Os09g22090	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0389000	LOC_Os09g22090.1						PO:0009066 - anther 
19498	_	OsSTA226	_				9	a mature anther-preferentially expressed gene. LOC_Os09g23340	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0397200	LOC_Os09g23340.1						PO:0009066 - anther 
19499	_	OsSTA227	_				9	a mature anther-preferentially expressed gene. LOC_Os09g25650	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0424701	LOC_Os09g25650.1						PO:0009066 - anther 
19500	_	OsSTA228	_				9	a mature anther-preferentially expressed gene. LOC_Os09g27710	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g27710						PO:0009066 - anther 
19501	_	OsSTA229	_				9	a mature anther-preferentially expressed gene. LOC_Os09g29990	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g29990						PO:0009066 - anther 
19502	_	OsSTA230	_				9	a mature anther-preferentially expressed gene. LOC_Os09g30446	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0482620	LOC_Os09g30446.1						PO:0009066 - anther 
19503	_	OsSTA231	_				9	a mature anther-preferentially expressed gene. LOC_Os09g33790	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0512800	LOC_Os09g33790.1						PO:0009066 - anther 
19504	_	OsSTA232	_				9	a mature anther-preferentially expressed gene. LOC_Os09g36340	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0533800	LOC_Os09g36340.1						PO:0009066 - anther 
19505	CHX3	OsSTA234, STA234, OsCHX03, CHX03, OsCHX3	CATION/H+ EXCHANGER  3	cation/H+ exchanger  3	CATION/H+ EXCHANGER  3		9	LOC_Os09g37300. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0545000	LOC_Os09g37300.1				GO:0012505 - endomembrane system, GO:0015299 - solute:hydrogen antiporter activity, GO:0016021 - integral to membrane, GO:0015672 - monovalent inorganic cation transport, GO:0006885 - regulation of pH		PO:0009066 - anther , PO:0009046 - flower 
19506	PT20	OsSTA235, OsPT20	PHOSPHATE TRANSPORTER 20	phosphate transporter 20	PHOSPHATE TRANSPORTER 20		9	a mature anther-preferentially expressed gene. LOC_Os09g38100	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0554000	LOC_Os09g38100.1				GO:0005777 - peroxisome, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	PO:0009066 - anther , PO:0009029 - stamen 
19507	_	OsSTA236	_				10	a mature anther-preferentially expressed gene. LOC_Os10g08640	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0168100	LOC_Os10g08640.1						PO:0009066 - anther 
19508	_	OsSTA238	_				10	a mature anther-preferentially expressed gene. LOC_Os10g11022	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0188250	LOC_Os10g11022.1						PO:0009066 - anther 
19509	_	OsSTA239	_				10	a mature anther-preferentially expressed gene. LOC_Os10g11750	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0193500	LOC_Os10g11750.1						PO:0009066 - anther 
19510	_	OsSTA241	_				10	a mature anther-preferentially expressed gene. LOC_Os10g22080	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0365300	LOC_Os10g22080.1						PO:0009066 - anther 
19511	_	OsSTA242	_				10	a mature anther-preferentially expressed gene. LOC_Os10g27170	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0411500	LOC_Os10g27170.1						PO:0009066 - anther 
19512	_	OsSTA243	_				10	a mature anther-preferentially expressed gene. LOC_Os10g27370	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os10g27370						PO:0009066 - anther 
19513	_	OsSTA244	_				10	a mature anther-preferentially expressed gene. LOC_Os10g28970	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0425400	LOC_Os10g28970.2						PO:0009066 - anther 
19514	_	OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2	_	beta-amylase 1, Beta-amylase 2			10	a mature anther-preferentially expressed gene. LOC_Os10g32810. Q9AV88. GO:0102229: amylopectin maltohydrolase activity. BAM2 in Wada et al. 2017.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0465700	LOC_Os10g32810.1				GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process		PO:0009066 - anther 
19515	_	OsSTA247	_				10	a mature anther-preferentially expressed gene. LOC_Os10g37260	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0516600	LOC_Os10g37260.1						PO:0009066 - anther 
19516	_	OsSTA248	_				10	a mature anther-preferentially expressed gene. LOC_Os10g41860	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0568100	LOC_Os10g41860.1						PO:0009066 - anther 
19517	_	OsSTA249	_				11	a mature anther-preferentially expressed gene. LOC_Os11g05970	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0158200	LOC_Os11g05970.1						PO:0009066 - anther 
19518	_	OsSTA250	_				11	a mature anther-preferentially expressed gene. LOC_Os11g06690	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0167500	LOC_Os11g06690.1						PO:0009066 - anther 
19519	_	OsSTA252	_				11	a mature anther-preferentially expressed gene. LOC_Os11g07510	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0176300	LOC_Os11g07510.1						PO:0009066 - anther 
19520	_	OsSTA254, STA254 OsSEC3B, SEC3B	_	exocyst subunit Sec3, exocyst subunit SEC3B			11	LOC_Os11g17600. a mature anther-preferentially expressed gene. OsSEC3B in Ma et al. 2018.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0276000	LOC_Os11g17600.3, LOC_Os11g17600.2, LOC_Os11g17600.1				GO:0000145 - exocyst, GO:0006893 - Golgi to plasma membrane transport, GO:0017049 - GTP-Rho binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0051601 - exocyst localization, GO:0006887 - exocytosis, GO:0005886 - plasma membrane		PO:0009066 - anther 
19521	_	OsSTA256	_				11	a mature anther-preferentially expressed gene. LOC_Os11g22396	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0417300	LOC_Os11g22396.1						PO:0009066 - anther 
19522	_	OsSTA257	_				11	a mature anther-preferentially expressed gene. LOC_Os11g22760	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0420200	LOC_Os11g22760.1						PO:0009066 - anther 
19523	_	OsSTA259	_				11	a mature anther-preferentially expressed gene. LOC_Os11g30350	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0496400	LOC_Os11g30350.1						PO:0009066 - anther 
19524	_	OsSTA260	_				11	a mature anther-preferentially expressed gene. LOC_Os11g32210	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0524900	LOC_Os11g32210.1						PO:0009066 - anther 
19525	_	OsSTA261	_				11	a mature anther-preferentially expressed gene. LOC_Os11g32960	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0534300	LOC_Os11g32960.1						PO:0009066 - anther 
19526	_	OsSTA262	_				11	a mature anther-preferentially expressed gene. LOC_Os11g33250	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0539000	LOC_Os11g33250.1						PO:0009066 - anther 
19527	_	OsSTA263	_				11	a mature anther-preferentially expressed gene. LOC_Os11g36740	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0575900	LOC_Os11g36740.1						PO:0009066 - anther 
19528	_	OsSTA264, STA264, Duf6, qSCT11	_	QTL for seedling cold tolerance on chromosome 11			11	a mature anther-preferentially expressed gene. LOC_Os11g37720.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0588100	LOC_Os11g37720.1				GO:0009409 - response to cold, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance	PO:0009066 - anther 
19529	_	OsSTA266	_				11	a mature anther-preferentially expressed gene. LOC_Os11g40650	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os11g40650						PO:0009066 - anther 
19530	_	OsSTA267	_				11	a mature anther-preferentially expressed gene. LOC_Os11g40800	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0624400	LOC_Os11g40800.1						PO:0009066 - anther 
19531	_	OsSTA268	_				11	a mature anther-preferentially expressed gene. LOC_Os11g41550	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os11g41550						PO:0009066 - anther 
19532	_	OsSTA272	_				12	a mature anther-preferentially expressed gene. LOC_Os12g04340	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os12g04340						PO:0009066 - anther 
19533	_	OsSTA274	_				12	a mature anther-preferentially expressed gene. LOC_Os12g06780	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0164600	LOC_Os12g06780.1						PO:0009066 - anther 
19534	_	OsSTA275	_				12	a mature anther-preferentially expressed gene. LOC_Os12g07840	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os12g07840.1						PO:0009066 - anther 
19535	_	OsSTA278	_				12	a mature anther-preferentially expressed gene. LOC_Os12g18960	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0288000	LOC_Os12g18960.2, LOC_Os12g18960.1						PO:0009066 - anther 
19536	_	OsSTA280	_				12	a mature anther-preferentially expressed gene. LOC_Os12g23150	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0420000	LOC_Os12g23150.1						PO:0009066 - anther 
19537	_	OsSTA283	_				12	a mature anther-preferentially expressed gene. LOC_Os12g31670	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0500900	LOC_Os12g31670.1						PO:0009066 - anther 
19538	_	OsSTA284	_				12	a mature anther-preferentially expressed gene. LOC_Os12g32310	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os12g32310						PO:0009066 - anther 
19539	_	OsSTA285	_				12	a mature anther-preferentially expressed gene. LOC_Os12g32520	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0509600	LOC_Os12g32520.1						PO:0009066 - anther 
19540	_	OsSTA286	_				12	a mature anther-preferentially expressed gene. LOC_Os12g38260	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0570500	LOC_Os12g38260.1						PO:0009066 - anther 
19541	_	OsSTA288	_				12	a mature anther-preferentially expressed gene. LOC_Os12g41350	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0606600	LOC_Os12g41350.2, LOC_Os12g41350.1						PO:0009066 - anther 
19542	_	OsSTA290	_				12	a mature anther-preferentially expressed gene. LOC_Os12g42660	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0621500	LOC_Os12g42660.1						PO:0009066 - anther 
19543	CHX4	OsSTA291, OsCHX04, CHX04, OsCHX4	CATION/H+ EXCHANGER  4	cation/H+ exchanger  4	CATION/H+ EXCHANGER  4		12	LOC_Os12g44300. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0640500	LOC_Os12g44300.1				GO:0016021 - integral to membrane, GO:0015299 - solute:hydrogen antiporter activity		PO:0009066 - anther 
19544	_	OsSec18, Sec18	_				5	a homologue of Sec18p/N-ethylmaleimide-sensitive factor (NSF).	 Seed - Morphological traits - Endosperm	Os05g0519400	LOC_Os05g44310.1				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0042735 - protein body, GO:0005773 - vacuole, GO:0005794 - Golgi apparatus, GO:0009506 - plasmodesma	TO:0000207 - plant height, TO:0000589 - seed weight (sensu Poaceae)	PO:0009089 - endosperm 
19546	CHX11	NaT, OsCHX11	CATION/H+ EXCHANGER  11	Sodium transporter, cation/H+ exchanger  11	CATION/H+ EXCHANGER  11		5	LOC_Os05g31730.	 Biochemical character	Os05g0382200	LOC_Os05g31730.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0016021 - integral to membrane		
19547	_		_				1	an OsPR1b-interacting factor.		Os01g0184200	LOC_Os01g08880.1				GO:0006625 - protein targeting to peroxisome, GO:0042623 - ATPase activity, coupled, GO:0005778 - peroxisomal membrane, GO:0005524 - ATP binding		
19548	_	OsPsbR3, PsbR3	_	PSII subunit PsbR3, photosystem II subunit PsbR3			8	an OsPR1b-interacting factor. a 10 kDa Photosystem II polypeptide.  eukaryotic photosystem II oxygen-evolving complex subunit. LOC_Os08g10020.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0200300	LOC_Os08g10020.3, LOC_Os08g10020.2, LOC_Os08g10020.1				GO:0009737 - response to abscisic acid stimulus, GO:0009654 - oxygen evolving complex, GO:0015979 - photosynthesis, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	
19549	_	OsLSK1, LSK1	_	Large spike S-domain receptor like Kinase 1			1	an OsPR1b-interacting factor. resistance protein. LOC_Os01g47900.	 Tolerance and resistance,  Character as QTL - Yield and productivity	Os01g0669100	LOC_Os01g47900.1				GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0009628 - response to abiotic stimulus, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen	TO:0002759 - grain number, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0000547 - primary branch number	
19550	_	OsKASI, KASI	_	beta-ketoacyl-[acyl carrier protein] synthase I		OskasI	6	LOC_Os06g09630.	 Biochemical character,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility	Os06g0196600	LOC_Os06g09630.1				GO:0009536 - plastid, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0006633 - fatty acid biosynthetic process, GO:0048364 - root development	TO:0000604 - fat and essential oil content, TO:0000392 - sterility or fertility trait, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage 
19551	UBC3	OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2	UBIQUITIN-CONJUGATING ENZYME 3	Ubiquitin-conjugating enzyme 3, E2 SUMO conjugation enzyme 1c, SUMO conjugation enzyme 1c, E2 protein SCE1c	UBIQUITIN-CONJUGATING ENZYME 3		4	OsSCEc in Rosa et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0580400	LOC_Os04g49130.2, LOC_Os04g49130.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0019789 - SUMO ligase activity, GO:0009733 - response to auxin stimulus	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0020148 - shoot apical meristem 
19552	UBC4	OsUBC4	UBIQUITIN-CONJUGATING ENZYME 4	Ubiquitin-conjugating enzyme 4	UBIQUITIN-CONJUGATING ENZYME 4		10	LOC_Os10g11260.	 Biochemical character	Os10g0190000	LOC_Os10g11260.4, LOC_Os10g11260.3, LOC_Os10g11260.2, LOC_Os10g11260.1				GO:0016874 - ligase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
19553	UBC5	OsUBC5	UBIQUITIN-CONJUGATING ENZYME 5	Ubiquitin-conjugating enzyme 5	UBIQUITIN-CONJUGATING ENZYME 5		8	LOC_Os08g28680.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0374100	LOC_Os08g28680.1				GO:0009414 - response to water deprivation, GO:0016874 - ligase activity, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance	
19554	UBC6	OsUBC6	UBIQUITIN-CONJUGATING ENZYME 6	Ubiquitin-conjugating enzyme 6	UBIQUITIN-CONJUGATING ENZYME 6		9	LOC_Os09g15320.	 Biochemical character	Os09g0321900	LOC_Os09g15320.2, LOC_Os09g15320.1				GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development, GO:0016874 - ligase activity	TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
19555	UBC7	OsUBC7	UBIQUITIN-CONJUGATING ENZYME 7	Ubiquitin-conjugating enzyme 7	UBIQUITIN-CONJUGATING ENZYME 7		7	LOC_Os07g07240.	 Biochemical character,  Reproductive organ - Inflorescence	Os07g0166800	LOC_Os07g07240.2, LOC_Os07g07240.1				GO:0016874 - ligase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence 
19556	UBC8	OsUBC8	UBIQUITIN-CONJUGATING ENZYME 8	Ubiquitin-conjugating enzyme 8	UBIQUITIN-CONJUGATING ENZYME 8		5	LOC_Os05g08960.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0182500	LOC_Os05g08960.2, LOC_Os05g08960.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0016874 - ligase activity	TO:0006001 - salt tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000276 - drought tolerance	PO:0009046 - flower 
19557	UBC10	OsUBC10	UBIQUITIN-CONJUGATING ENZYME 10	Ubiquitin-conjugating enzyme 10	UBIQUITIN-CONJUGATING ENZYME 10		10	LOC_Os10g31000.	 Biochemical character	Os10g0447100	LOC_Os10g31000.2, LOC_Os10g31000.1				GO:0009737 - response to abscisic acid stimulus, GO:0016874 - ligase activity	TO:0000615 - abscisic acid sensitivity	
19558	UBC11	OsUBC11	UBIQUITIN-CONJUGATING ENZYME 11	Ubiquitin-conjugating enzyme 11	UBIQUITIN-CONJUGATING ENZYME 11		1	 LOC_Os01g62244.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0839700	LOC_Os01g62244.3, LOC_Os01g62244.2, LOC_Os01g62244.1				GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0016874 - ligase activity, GO:0009414 - response to water deprivation	TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009047 - stem , PO:0009049 - inflorescence 
19559	UBC12	OsUBC12	UBIQUITIN-CONJUGATING ENZYME 12	Ubiquitin-conjugating enzyme 12	UBIQUITIN-CONJUGATING ENZYME 12		5	LOC_Os05g38550.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0460200	LOC_Os05g38550.2, LOC_Os05g38550.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016874 - ligase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
19560	UBC13	OsUBC13	UBIQUITIN-CONJUGATING ENZYME 13	Ubiquitin-conjugating enzyme 13	UBIQUITIN-CONJUGATING ENZYME 13		2	LOC_Os02g02830.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0120600	LOC_Os02g02830.2, LOC_Os02g02830.1				GO:0016874 - ligase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042023 - DNA endoreduplication, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0043248 - proteasome assembly, GO:0051510 - regulation of unidimensional cell growth, GO:0051788 - response to misfolded protein	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0025034 - leaf 
19561	UBC17	OsUBC17	UBIQUITIN-CONJUGATING ENZYME 17	Ubiquitin-conjugating enzyme 17	UBIQUITIN-CONJUGATING ENZYME 17		6	LOC_Os06g30970.	 Biochemical character	Os06g0506600	LOC_Os06g30970.1				GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0042023 - DNA endoreduplication, GO:0043248 - proteasome assembly, GO:0051510 - regulation of unidimensional cell growth, GO:0051788 - response to misfolded protein	TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
19562	UBC18	OsUBC18	UBIQUITIN-CONJUGATING ENZYME 18	Ubiquitin-conjugating enzyme 18	UBIQUITIN-CONJUGATING ENZYME 18		9	LOC_Os09g12230.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0293400	LOC_Os09g12230.1				GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0016874 - ligase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009005 - root 
19563	UBC22	OsUBC22	UBIQUITIN-CONJUGATING ENZYME 22	Ubiquitin-conjugating enzyme 22	UBIQUITIN-CONJUGATING ENZYME 22		1	LOC_Os01g60410.	 Biochemical character	Os01g0819500	LOC_Os01g60410.3, LOC_Os01g60410.2, LOC_Os01g60410.1				GO:0051788 - response to misfolded protein, GO:0080129 - proteasome core complex assembly, GO:0009407 - toxin catabolic process, GO:0006635 - fatty acid beta-oxidation, GO:0042023 - DNA endoreduplication, GO:0010286 - heat acclimation, GO:0006301 - postreplication repair, GO:0009737 - response to abscisic acid stimulus, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0051510 - regulation of unidimensional cell growth	TO:0000615 - abscisic acid sensitivity	
19564	UBC23	OsUBC23	UBIQUITIN-CONJUGATING ENZYME 23	Ubiquitin-conjugating enzyme 23	UBIQUITIN-CONJUGATING ENZYME 23		1	LOC_Os01g60360.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0819400	LOC_Os01g60360.1				GO:0051510 - regulation of unidimensional cell growth, GO:0006301 - postreplication repair, GO:0080129 - proteasome core complex assembly, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0042023 - DNA endoreduplication, GO:0016874 - ligase activity, GO:0006635 - fatty acid beta-oxidation, GO:0051788 - response to misfolded protein, GO:0010286 - heat acclimation, GO:0009407 - toxin catabolic process		PO:0009046 - flower , PO:0009049 - inflorescence 
19565	UBC25	OsUBC25	UBIQUITIN-CONJUGATING ENZYME 25	Ubiquitin-conjugating enzyme 25	UBIQUITIN-CONJUGATING ENZYME 25		3	LOC_Os03g47770.	 Biochemical character	Os03g0681400	LOC_Os03g47770.1				GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	
19566	UBC26	OsUBC26	UBIQUITIN-CONJUGATING ENZYME 26	Ubiquitin-conjugating enzyme 26	UBIQUITIN-CONJUGATING ENZYME 26		12	LOC_Os12g44000.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0636800	LOC_Os12g44000.3, LOC_Os12g44000.2, LOC_Os12g44000.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000401 - plant growth hormone sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0009049 - inflorescence , PO:0025034 - leaf 
19567	UBC27	OsUBC27	UBIQUITIN-CONJUGATING ENZYME 27	Ubiquitin-conjugating enzyme 27	UBIQUITIN-CONJUGATING ENZYME 27		1	LOC_Os01g16650.	 Biochemical character	Os01g0273100	LOC_Os01g16650.1				GO:0009739 - response to gibberellin stimulus, GO:0016874 - ligase activity	TO:0000166 - gibberellic acid sensitivity	PO:0020148 - shoot apical meristem 
19568	UBC33	OsUBC33	UBIQUITIN-CONJUGATING ENZYME 33	Ubiquitin-conjugating enzyme 33	UBIQUITIN-CONJUGATING ENZYME 33		6	LOC_Os06g45000.	 Biochemical character,  Reproductive organ - Inflorescence	Os06g0660700	LOC_Os06g45000.3, LOC_Os06g45000.2, LOC_Os06g45000.1				GO:0016874 - ligase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0020148 - shoot apical meristem 
19569	UBC34	OsUBC34	UBIQUITIN-CONJUGATING ENZYME 34	Ubiquitin-conjugating enzyme 34	UBIQUITIN-CONJUGATING ENZYME 34		1	LOC_Os01g03520.	 Biochemical character	Os01g0125900	LOC_Os01g03520.1				GO:0006301 - postreplication repair, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development, GO:0009733 - response to auxin stimulus, GO:0005829 - cytosol	TO:0000653 - seed development trait, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0001170 - seed development stage 
19570	UBC36	OsUBC36	UBIQUITIN-CONJUGATING ENZYME 36	Ubiquitin-conjugating enzyme 36	UBIQUITIN-CONJUGATING ENZYME 36		5	LOC_Os05g06120.	 Biochemical character	Os05g0153066/Os05g0153132					GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity	
19571	UBC37	OsUBC37	UBIQUITIN-CONJUGATING ENZYME 37	Ubiquitin-conjugating enzyme 37	UBIQUITIN-CONJUGATING ENZYME 37		1	LOC_Os01g13280.	 Biochemical character	Os01g0233900	LOC_Os01g13280.1				GO:0048316 - seed development, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
19572	UBC39	OsUBC39	UBIQUITIN-CONJUGATING ENZYME 39	Ubiquitin-conjugating enzyme 39	UBIQUITIN-CONJUGATING ENZYME 39		1	LOC_Os01g48580.	 Biochemical character	Os01g0677500	LOC_Os01g48580.1				GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity	
19573	UBC40	OsUBC40	UBIQUITIN-CONJUGATING ENZYME 40	Ubiquitin-conjugating enzyme 40	UBIQUITIN-CONJUGATING ENZYME 40		9	LOC_Os09g12310.	 Biochemical character	Os09g0294300	LOC_Os09g12310.1				GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity	
19574	UBC41	OsUBC41	UBIQUITIN-CONJUGATING ENZYME 41	Ubiquitin-conjugating enzyme 41	UBIQUITIN-CONJUGATING ENZYME 41		5	LOC_Os05g48380.	 Biochemical character	Os05g0557600	LOC_Os05g48380.1				GO:0048316 - seed development, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
19575	UBC42	OsUBC42	UBIQUITIN-CONJUGATING ENZYME 42	Ubiquitin-conjugating enzyme 42	UBIQUITIN-CONJUGATING ENZYME 42		1	LOC_Os01g13170.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0232500	LOC_Os01g13170.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0001170 - seed development stage 
19576	UBC43	OsUBC43	UBIQUITIN-CONJUGATING ENZYME 43	Ubiquitin-conjugating enzyme 43	UBIQUITIN-CONJUGATING ENZYME 43		5	LOC_Os05g14300.	 Biochemical character	Os05g0232500	LOC_Os05g14300.1				GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	
19577	UBC44	OsUBC44	UBIQUITIN-CONJUGATING ENZYME 44	Ubiquitin-conjugating enzyme 44	UBIQUITIN-CONJUGATING ENZYME 44		1	LOC_Os01g70140.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0925800	LOC_Os01g70140.1				GO:0009414 - response to water deprivation, GO:0016874 - ligase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0020148 - shoot apical meristem 
19578	UBC45	OsUBC45	UBIQUITIN-CONJUGATING ENZYME 45	Ubiquitin-conjugating enzyme 45	UBIQUITIN-CONJUGATING ENZYME 45		3	LOC_Os03g19500.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0308000	LOC_Os03g19500.1				GO:0006635 - fatty acid beta-oxidation, GO:0009407 - toxin catabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0016036 - cellular response to phosphate starvation, GO:0048471 - perinuclear region of cytoplasm, GO:0048316 - seed development, GO:0019375 - galactolipid biosynthetic process, GO:0042631 - cellular response to water deprivation, GO:0080129 - proteasome core complex assembly, GO:0051788 - response to misfolded protein, GO:0005783 - endoplasmic reticulum, GO:0006301 - postreplication repair, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0001170 - seed development stage 
19579	UBC46	OsUBC46	UBIQUITIN-CONJUGATING ENZYME 46	Ubiquitin-conjugating enzyme 46	UBIQUITIN-CONJUGATING ENZYME 46		6	LOC_Os06g09330.	 Biochemical character	Os06g0193000	LOC_Os06g09330.2, LOC_Os06g09330.1				GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development	TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait	PO:0005052 - plant callus , PO:0001170 - seed development stage , PO:0025034 - leaf , PO:0009049 - inflorescence 
19580	UBC48	OsUBC48	UBIQUITIN-CONJUGATING ENZYME 48	Ubiquitin-conjugating enzyme 48	UBIQUITIN-CONJUGATING ENZYME 48		1	LOC_Os01g42040.	 Biochemical character	Os01g0605300	LOC_Os01g42040.1				GO:0016874 - ligase activity		PO:0020148 - shoot apical meristem 
19581	GRY79	OsGRY79, OsMSL12, MSL12	GREEN-REVERTIBLE YELLOW 79	green-revertible yellow79, Myb/SANT-LIKE 12		gry79	2	a putative metallo-b-lactamase-trihelix chimera.	 Vegetative organ - Leaf,  Coloration	Os02g0539600	LOC_Os02g33610.1, LOC_Os02g33610.2				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009507 - chloroplast, GO:0015979 - photosynthesis, GO:0045333 - cellular respiration, GO:0009658 - chloroplast organization	TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	PO:0025034 - leaf , PO:0007112 - 1 main shoot growth stage 
19582	_	OsULT1	_	ULTRAPETALA1, ULTRAPETALA 1			1	SAND-domain containing transcriptional regulator. LOC_Os01g57240.		Os01g0780800	LOC_Os01g57240.1				GO:0003677 - DNA binding		
19583	_	OsDGAT	_	diacylglycerolacetyl transferase			2	a triacylglycerol (TAG) biosynthesis gene. LOC_Os02g48350.	 Biochemical character	Os02g0714100	LOC_Os02g48350.1				GO:0019432 - triglyceride biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
19584	_	OsTCP3, TCP3	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 3			1	LOC_Os01g41130 (not found in MSU Rice Genome Annotation Project Release 7 data). The locus corresponding to OsTCP3 (LOC_Os01g41130) has been considered obsolete since release 4 of MSU database. However, EST support for this gene is present in NCBI database (Sharma et al. 2010).							GO:0005634 - nucleus		
19585	_	OsTCP11, TCP11	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 11			2	LOC_Os02g58180.	 Tolerance and resistance - Stress tolerance	Os02g0828600	LOC_Os02g58180.1				GO:0009409 - response to cold, GO:0005634 - nucleus	TO:0000303 - cold tolerance	
19586	_	OsTCP12, TCP12	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 12			3	LOC_Os03g30880.			LOC_Os03g30880				GO:0005634 - nucleus		
19587	_	OsTPR1, TPR1	_	TOPLESS-RELATED PROTEIN 1				a transcriptional repressor.									
19588	_	OsTPR2, TPR2	_	TOPLESS-RELATED PROTEIN 2				a transcriptional repressor.									
19589	_	OsTPR3, TPR3	_	TOPLESS-RELATED PROTEIN 3				a transcriptional repressor.									
19590	_		_				3	one of the three paralogous RING proteins of OsSRFP1 in the rice genome. LOC_Os03g05270.		Os03g0145900	LOC_Os03g05270.3, LOC_Os03g05270.2, LOC_Os03g05270.1				GO:0008270 - zinc ion binding		
19591	_		_				12	one of the three paralogous RING proteins of OsSRFP1 in the rice genome. LOC_Os12g35320.		Os12g0538500	LOC_Os12g35320.1				GO:0008270 - zinc ion binding		
19592	_	CDC2	_	cdc2 (cyclin-dependent kinase 2) -like gene			6	LOC_Os06g47310.		Os06g0687600	LOC_Os06g47310.1				GO:0016301 - kinase activity		
19593	_	CDC3	_	cdc2 (cyclin-dependent kinase 2) -like gene			2	LOC_Os02g06380.		Os02g0158500	LOC_Os02g06380.1						
19594	_	Cen8.t00849	_				8	a Cen8 (centromere of chromosome 8) Active Gene.									
19595	_	OsLACS1	_	long-chain acyl-CoA synthetase 1			5	a rice homologue of A. thaliana wax synthesis-related gene.	 Biochemical character	Os05g0132100	LOC_Os05g04170.4, LOC_Os05g04170.3, LOC_Os05g04170.2, LOC_Os05g04170.1				GO:0010025 - wax biosynthetic process, GO:0031957 - very-long-chain-fatty-acid-CoA ligase activity, GO:0009627 - systemic acquired resistance, GO:0034976 - response to endoplasmic reticulum stress, GO:0010143 - cutin biosynthetic process, GO:0010103 - stomatal complex morphogenesis		
19596	_		_	cyt-RPEase, cytosolic RPEase, cytosolic D-Ribulose-5-phosphate 3-Epimerase			9	LOC_Os09g32810. AF189365. Q9SE42. 	 Biochemical character	Os09g0505700	LOC_Os09g32810.2				GO:0004750 - ribulose-phosphate 3-epimerase activity, GO:0005737 - cytoplasm, GO:0005975 - carbohydrate metabolic process, GO:0006098 - pentose-phosphate shunt, GO:0046872 - metal ion binding		
19597	_	PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp	_	PolI-like DNA polymerase, plastidal DNA polymerase 1			8	AB047689. Q6Z4T5. GO:0071897: DNA biosynthetic process.		Os08g0175300	LOC_Os08g07840.1				GO:0009657 - plastid organization, GO:0006261 - DNA-dependent DNA replication, GO:0006281 - DNA repair, GO:0008408 - 3'-5' exonuclease activity, GO:0009507 - chloroplast, GO:0003677 - DNA binding, GO:0003887 - DNA-directed DNA polymerase activity		PO:0020148 - shoot apical meristem , PO:0020147 - root apical meristem , PO:0000017 - vascular leaf primordium , PO:0025404 - phyllome marginal meristem 
19598	_	OsCBT, CBT	_	CaM-binding transcription factor			7	AF499741. It is suggested that OsCBT is a transcription activator modulated by CaM (Choi et al. 2005).	 Other	Os07g0490200	LOC_Os07g30774.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005516 - calmodulin binding, GO:0003677 - DNA binding		
19599	_	CAMTA, qSCT1	_	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, QTL for seedling cold tolerance on chromosome 1, calmodulin-binding transcription activator			1	one of six rice CBT homologues. LOC_Os01g69910. GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0923600	LOC_Os01g69910.3, LOC_Os01g69910.2, LOC_Os01g69910.1				GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000303 - cold tolerance	
19600	_		_	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog			3	one of six rice CBT homologues. LOC_Os03g09100.	 Other	Os03g0191000	LOC_Os03g09100.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
19601	_		_	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog			3	one of six rice CBT homologues. LOC_Os03g27080.		Os03g0388500	LOC_Os03g27080.2, LOC_Os03g27080.1						
19602	_		_	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, calmodulin-binding transcription activator			4	one of six rice CBT homologues. OsCaM1 target gene.	 Other	Os04g0388500	LOC_Os04g31900.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
19603	_		_	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog			7	one of six rice CBT homologues. LOC_Os07g43030.		Os07g0623100 	LOC_Os07g43030.1						
19604	_		_	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog			10	one of six rice CBT homologues. LOC_Os10g22950.	 Other	Os10g0375600	LOC_Os10g22950.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
19606	_	OsGPCR, GPCR	_	G-protein coupled receptor	_		11	HQ676132. KC609171-KC609183 (O. sativa and wild rice species, partial cds).	 Tolerance and resistance - Stress tolerance	Os06g0199800	LOC_Os06g09930.1				GO:0007166 - cell surface receptor linked signal transduction, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004888 - transmembrane receptor activity, GO:0016020 - membrane	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
19607	_	orf113	_				Mt	a CMS-associated gene of RT98-CMS. AP012527 (Oryza rufipogon mitochondrial DNA, complete genome, strain: RT98C) : BAN67491.1. The orf113 gene shows chimeric structure to the flanking and coding region of the known mitochondrial gene nad9 (Igarashi et al. 2013).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000232 - cytoplasmic male sterility (sensu Oryza)	
19608	_	OsMAX1c	_				1	one of MAX1 orthologues. JX566699. The tested Os01g0701500 allele is incapable of rescuing any of the tested max1 phenotypes, likely due to a premature stop codon, suggesting that this gene may have lost all function and may be degenerating to become a pseudogene (Challis et al. 2013).	 Biochemical character	Os01g0701500	LOC_Os01g50590.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
19609	_	OsMAX1D	_				2	one of MAX1 orthologues. JX566700. Os02g0221900 has similar functional capability to AtMAX1 (Challis et al. 2013).	 Biochemical character,  Vegetative organ - Leaf	Os02g0221900	LOC_Os02g12890.2, LOC_Os02g12890.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000492 - leaf shape, TO:0002637 - leaf size, TO:0002639 - shoot branching	
19610	_	OsMAX1b	_				6	one of MAX1 orthologues. JX566698. Os06g0565100 has similar functional capability to AtMAX1 (Challis et al. 2013).	 Biochemical character,  Vegetative organ - Leaf	Os06g0565100	LOC_Os06g36920.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding	TO:0000492 - leaf shape, TO:0002639 - shoot branching, TO:0002637 - leaf size	
19611	_	OsPFK01, PFK01, PFK1, OsPFK1	_	phosphofructokinase 1			1	group A phosphofructokinase (PKF_A). LOC_Os01g09570.	 Biochemical character	Os01g0191700 	LOC_Os01g09570.1				GO:0003872 - 6-phosphofructokinase activity, GO:0006096 - glycolysis, GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005737 - cytoplasm, GO:0005524 - ATP binding		
19612	_	OsPFK02, PFK02, PFK2, OsPFK2	_	phosphofructokinase 2			1	group A phosphofructokinase (PKF_A). LOC_Os01g53680.	 Biochemical character	Os01g0738800	LOC_Os01g53680.1				GO:0006002 - fructose 6-phosphate metabolic process, GO:0006096 - glycolysis, GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm		
19613	_	OsPFK05, PFK05, PFK5, OsPFK5	_	phosphofructokinase 5			5	group A phosphofructokinase (PKF_A).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0524400 	LOC_Os05g44922.2, LOC_Os05g44922.1				GO:0005829 - cytosol, GO:0034059 - response to anoxia, GO:0046872 - metal ion binding, GO:0006096 - glycolysis, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0006002 - fructose 6-phosphate metabolic process	TO:0000482 - chemical stress sensitivity	
19614	_	OsPFK03, PFK03, PFK3, OsPFK3	_	phosphofructokinase 3			4	group B phosphofructokinase (PKF_B). LOC_Os04g39420.	 Biochemical character	Os04g0469500	LOC_Os04g39420.1				GO:0006096 - glycolysis, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0006002 - fructose 6-phosphate metabolic process, GO:0046872 - metal ion binding		
19615	_	OsPFK07, PFK07, PFK7	_	phosphofructokinase 7			8	group C phosphofructokinase (PKF_C). LOC_Os08g34050. KC620558, KC620557.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0439000 	LOC_Os08g34050.1				GO:0046872 - metal ion binding, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0006002 - fructose 6-phosphate metabolic process, GO:0006096 - glycolysis, GO:0009536 - plastid, GO:0034059 - response to anoxia	TO:0000482 - chemical stress sensitivity	
19616	_	OsPFK08, PFK08, PFK8	_	phosphofructokinase 8			8	group C phosphofructokinase (PKF_C). LOC_Os09g24910.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0415800	LOC_Os09g24910.2, LOC_Os09g24910.1				GO:0005524 - ATP binding, GO:0003872 - 6-phosphofructokinase activity, GO:0034059 - response to anoxia, GO:0046872 - metal ion binding, GO:0009536 - plastid, GO:0006096 - glycolysis, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005737 - cytoplasm	TO:0000482 - chemical stress sensitivity	
19617	_	OsPFK10, PFK10	_	phosphofructokinase 10			10	group C phosphofructokinase (PKF_C). LOC_Os10g26570.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0405600	LOC_Os10g26570.1				GO:0034059 - response to anoxia, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0003872 - 6-phosphofructokinase activity, GO:0006096 - glycolysis, GO:0009536 - plastid, GO:0046872 - metal ion binding	TO:0000482 - chemical stress sensitivity	
19618	_	OsPFPA1, PFPA1	_	"pyrophosphate-fructose-6-phosphatephosphotransferase
 alpha subunit 1, PFP-alpha subunit 1"			2	LOC_Os02g48360.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0714200	LOC_Os02g48360.2, LOC_Os02g48360.1				GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0003872 - 6-phosphofructokinase activity, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity, GO:0006096 - glycolysis, GO:0034059 - response to anoxia	TO:0000248 - primary macronutrient sensitivity	
19619	_	OsPFPA2, PFPA2	_	"pyrophosphate-fructose-6-phosphatephosphotransferase
 alpha subunit 2, PFP-alpha subunit 2"			6	LOC_Os06g22060. pyrophosphate-dependent phosphofructokinase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0326400 	LOC_Os06g22060.5, LOC_Os06g22060.4, LOC_Os06g22060.3, LOC_Os06g22060.2, LOC_Os06g22060.1				GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity, GO:0005524 - ATP binding, GO:0003872 - 6-phosphofructokinase activity, GO:0006002 - fructose 6-phosphate metabolic process, GO:0006096 - glycolysis, GO:0009744 - response to sucrose stimulus, GO:0034059 - response to anoxia, GO:0046872 - metal ion binding, GO:0005737 - cytoplasm, GO:0005829 - cytosol	TO:0000482 - chemical stress sensitivity	
19620	_	OsPFPA4, PFPA4	_	"pyrophosphate-fructose-6-phosphatephosphotransferase
 alpha subunit 4, PFP-alpha subunit 4"			9	LOC_Os09g12650. KC620559.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0298100 	LOC_Os09g12650.1				GO:0046872 - metal ion binding, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0006096 - glycolysis, GO:0034058 - endosomal vesicle fusion, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity	TO:0000482 - chemical stress sensitivity	
19621	LYL2	OsGGRII, GGRII, OsGGR2, GGR2	LIGHT-INDUCED YELLOW LEAF 2	Light-Induced Yellow Leaf 2, Geranylgeranyl Reductase II, geranylgeranyl reductase 2			1	LOC_Os01g16020.	 Biochemical character	Os01g0265000 	LOC_Os01g16020.1				GO:0010189 - vitamin E biosynthetic process, GO:0015979 - photosynthesis, GO:0015995 - chlorophyll biosynthetic process, GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, GO:0045550 - geranylgeranyl reductase activity		PO:0005052 - plant callus , PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0020104 - leaf sheath 
19622	SOR1	MHZ2, OsMHZ2, OsSOR1	SOIL-SURFACE ROOTING 1	soil-surface rooting 1, maohuzi 2		sor1, mhz2, sor1-1, sor1-2	4	LOC_Os04g01160. AB818510. GO:0061630: ubiquitin protein ligase activity.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os04g0101800	LOC_Os04g01160.1				GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0008270 - zinc ion binding, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0009630 - gravitropism, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus	TO:0000163 - auxin sensitivity, TO:0000227 - root length, TO:0002693 - gravity response trait, TO:0000173 - ethylene sensitivity	PO:0020127 - primary root 
19623	SSG4		SUBSTANDARD STARCH GRAIN4	substandard starch grain4, substandard starch grain 4		ssg4	1	a DUF490-Containing Protein. AB856288.	 Seed - Morphological traits - Endosperm	Os01g0179400	LOC_Os01g08420.1				GO:0009570 - chloroplast stroma, GO:0009501 - amyloplast	TO:0002655 - starch grain size, TO:0000266 - chalky endosperm, TO:0002715 - chloroplast development trait, TO:0000149 - seed width	
19626	_	OsLFY, LFY	_	LEAFY				KF051023. a rice ortholog of  AtLFY.	 Other						GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
19627	HWI1	25L1	HYBRID WEAKNESS I 1	LOC_Os11g07225-like 1			11	LOC_Os11g07230. 25L1 is the one of two leucine-rich repeat receptor-like kinase (LRR-RLK) genes in Hwi1 locus which induce hybrid weakness (Chen et al. 2014).	 Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os11g0173500	LOC_Os11g07230.3, LOC_Os11g07230.2, LOC_Os11g07230.1				GO:0009755 - hormone-mediated signaling, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0048364 - root development, GO:0046777 - protein amino acid autophosphorylation, GO:0031625 - ubiquitin protein ligase binding, GO:0016021 - integral to membrane, GO:0001653 - peptide receptor activity, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0009506 - plasmodesma	TO:0000392 - sterility or fertility trait, TO:0000432 - temperature response trait, TO:0000084 - root number, TO:0000207 - plant height, TO:0000654 - shoot development trait	PO:0007520 - root development stage 
19628	_	Hwi2, OsSub9, SUB9	_	Subtilisin 9, SUBTILISIN 9		hwi2	1	LOC_Os01g58290. a secreted putative subtilisin-like protease. Subtilisin Family (Peptidase_S8; PF00082). (http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml) GO:0090551: response to manganese starvation.	 Biochemical character,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness,  Tolerance and resistance - Stress tolerance	Os01g0795400	LOC_Os01g58290.4, LOC_Os01g58290.3, LOC_Os01g58290.2, LOC_Os01g58290.1				GO:0010042 - response to manganese ion, GO:0048364 - root development, GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall, GO:0009408 - response to heat	TO:0000073 - manganese sensitivity, TO:0000207 - plant height, TO:0000084 - root number, TO:0000392 - sterility or fertility trait, TO:0000654 - shoot development trait, TO:0000432 - temperature response trait	PO:0007520 - root development stage 
19629	_	Pikh-1	_	Pyricularia oryzae resistance kh-1			11	HQ662330. Pik-h, an allele of Pik, comprises a pair of NBS-LRR genes, Pikh-1 and Pikh-2. Pikh-1 appears to be constitutively transcribed (Zhai et al. 2014).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19630	_	Pikh-2	_	Pyricularia oryzae resistance kh-2			11	HQ662330. Pik-h, an allele of Pik, comprises a pair of NBS-LRR genes, Pikh-1 and Pikh-2. The transcript abundance of Pikh-2 responds to pathogen challenge (Zhai et al. 2014).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19631	_	OsDJC31	_	type III J protein 31, rice DJC31 homolog			5	a Homolog of Arabidopsis chloroplast J protein. BK008486. OsDJC31 (GenBank accession: BK008486) was re-annotated from the continuous genomic region covered by loci LOC_Os05g31056 and LOC_Os05g31062 (Chiu et al. 2013).		Os05g0374500/Os05g0374600					GO:0009507 - chloroplast		
19632	_	OsDJC82, DJC82	_	type III J protein 82, rice DJC82 homolog			5	a Homolog of Arabidopsis chloroplast J protein. BK008487.  The rice DJC82 homologue, OsDJC82 (GenBank accession: BK008487), was re-annotated from original annotation for locus LOC_Os05g33010 (Chiu et al. 2013).		Os05g0397800					GO:0009507 - chloroplast		
19634	_	PPR454, PPR10, PPR2	_	pentatricopeptide repeat (PPR)-encoding gene 454, pentatricopeptide repeat-containing protein 454, pentatricopeptide repeat protein 10, pentatricopeptide repeat motif containing gene 2, PPR motif-containing gene 2		PPR10-454-M, PPR10-454-I, PPR10-454-Z, PPR10-461-N, PPR10-569-93	10	LOC_Os10g35230. AB900791. KJ680251-KJ680253. PPR2 in Ngangkham et al. 2010. PPR10 in Tang et al. 2014. PPR454 in Kazama and Toriyama 2014. 		Os10g0495100	LOC_Os10g35230.1						
19635	_	PPR458, PPR7, PPR4	_	pentatricopeptide repeat (PPR)-encoding gene 458, pentatricopeptide repeat-containing protein 458, pentatricopeptide repeat protein 7, pentatricopeptide repeat motif containing gene 4, PPR motif-containing gene 4		PPR7-454-M, PPR7-458-N, PPR7-458-ZH, PPR7-458-I, PPR7-458-Z, PPR7-458-J	10	LOC_Os10g35260. AB900794. KJ680242-KJ680245. PPR4 in Ngangkham et al. 2010. PPR7 in Tang et al. 2014. PPR458 in Kazama and Toriyama 2014.		Os10g0495400	LOC_Os10g35260.1						
19636	_	PPR782b	_	pentatricopeptide repeat (PPR)-encoding gene 782b, pentatricopeptide repeat-containing protein 782b			10	AB900793.									
19637	WSL		WHITE STRIPE LEAF	white stripe leaf		wsl	1	A Chloroplast-Localized Pentatricopeptide Repeat Protein. KC543701. LOC_Os01g37870. TO:0006060: leaf chlorosis.	 Tolerance and resistance - Stress tolerance	Os01g0559500	LOC_Os01g37870.4, LOC_Os01g37870.3, LOC_Os01g37870.2, LOC_Os01g37870.1				GO:0009658 - chloroplast organization, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008380 - RNA splicing, GO:0042254 - ribosome biogenesis, GO:0042743 - hydrogen peroxide metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009628 - response to abiotic stimulus, GO:0009651 - response to salt stress	TO:0000168 - abiotic stress trait, TO:0002715 - chloroplast development trait, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
19638	_	MIT	_	mitochondrial Fe transporter		mit-1, mit-2	3	LOC_Os03g18550. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character	Os03g0296800	LOC_Os03g18550.2, LOC_Os03g18550.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
19639	SUI2	OsSUI2	SHORTENED UPPERMOST INTERNODE 2	Shortened Uppermost Internode 2		sui2	5	LOC_Os05g48060. JQ173372. Q6I628. TO:0000755: shoot internode anatomy and morphology trait. OsPSS-1 homolog.	 Biochemical character,  Vegetative organ - Culm	Os05g0554400	LOC_Os05g48060.1				GO:0006659 - phosphatidylserine biosynthetic process, GO:0080006 - internode patterning, GO:0019827 - stem cell maintenance, GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity, GO:0048831 - regulation of shoot development, GO:0016021 - integral to membrane, GO:0006646 - phosphatidylethanolamine biosynthetic process, GO:0005789 - endoplasmic reticulum membrane	TO:0000145 - internode length, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000040 - panicle length	PO:0005005 - shoot internode , PO:0007089 - stem elongation stage 
19640	SUI3	OsSUI3	SHORTENED UPPERMOST INTERNODE 3	Shortened Uppermost Internode 3		sui3	1	LOC_Os01g49024. JQ173373. Q5N8Q3. TO:0000755: shoot internode anatomy and morphology trait. OsPSS-1 homolog.	 Biochemical character,  Vegetative organ - Culm	Os01g0683500	LOC_Os01g49024.1, LOC_Os01g49020.1				GO:0048831 - regulation of shoot development, GO:0006646 - phosphatidylethanolamine biosynthetic process, GO:0080006 - internode patterning, GO:0016021 - integral to membrane, GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity, GO:0006659 - phosphatidylserine biosynthetic process, GO:0005789 - endoplasmic reticulum membrane	TO:0000207 - plant height, TO:0000145 - internode length	PO:0005005 - shoot internode , PO:0007089 - stem elongation stage 
19641	_		_	ubiquitin 2				HQ340170 (Oryza coarctata).									
19642	_	TGO, tgo	_	transglutaminase, Tgase			4	FR717829, FR717830. LOC Os04g40300.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0479100	LOC_Os04g40300.1				GO:0009542 - granum, GO:0009416 - response to light stimulus, GO:0003810 - protein-glutamine gamma-glutamyltransferase activity	TO:0000075 - light sensitivity	PO:0004001 - bulliform cell 
19643	_	CRR-F	_	"CRR-F element, centromere-specific retrotransposon
of FF genome"				centromere-specific retrotransposon in the O. brachyantha centromeres.							GO:0032196 - transposition		
19644	_	PPR8	_	pentatricopeptide repeat protein 8		PPR8-780-M	10	KJ680246. PPR8, which is located between PPR7 and PPR9, is absent in japonica cultivars.									
19645	_	PPR794, PPR6, PPR6-794, PPR5	_	a 794-aa protein with 17 PPR motifs, pentatricopeptide repeat protein 6, pentatricopeptide repeat protein 794, pentatricopeptide repeat motif containing gene 5, PPR motif-containing gene 5			10	LOC_Os10g35436. AB110443 (indica). AB110444 (japonica).  PPR794 in Komori at al., 2004 and Hu et al. 2013. PPR5 in Ngangkham et al. 2010. PPR6 in Tang et al. 2014.		Os10g0497300	LOC_Os10g35436.1						
19646	_	PPR683, PPR5, PPR5-683	_	a 683-aa protein with 16 PPR motifs, pentatricopeptide repeat protein 5, pentatricopeptide repeat protein 683			10	AB110443 (indica). AB110444 (japonica).									
19647	_	PPR762, PPR4, PPR4-762	_	a 762-aa protein with 17 PPR motifs, pentatricopeptide repeat protein 4			10	AB110443 (indica). PPR4 is absent in japonica cultivars (Tang et al. 2014).									
19648	_	PPR1, PPR1-454	_	a 454-aa protein with PPR motifs, pentatricopeptide repeat protein 1			10										
19649	SMK1	Os_SMK1	SMALL KERNEL 1	Small kernel 1			11	LOC_Os11g10740. KF577931. the rice ortholog of maize SMK1. a pentatricopeptide repeat protein.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits	Os11g0213500	LOC_Os11g10740.1				GO:0016556 - mRNA modification, GO:0009790 - embryonic development, GO:0009845 - seed germination, GO:0048316 - seed development	TO:0000100 - shrunken endosperm, TO:0000266 - chalky endosperm, TO:0000620 - embryo development trait, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0007057 - 0 seed germination stage , PO:0020144 - apical meristem 
19650	_	STPS, OsSTPS, OsSTPS2, STPS2	_	sesquiterpene synthase, sesquiterpene synthase 2			4	LOC_Os04g27430. KC527594, KC511051, KC511050, KC511049, KC511035, KC511031, KC511029, KC511028, KC511027. OsSTPS2 in Kamolsukyeunyong et al. 2019.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os04g0342100	LOC_Os04g27430				GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
19651	OSCA1.1	OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1	Hyperosmolality-gated calcium-permeable channel 1.1, DUF221 Domain containing Protein 1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1		1	OSCA1 homologue. KJ920371. LOC_Os01g35050. Oryza brachyantha ortholog: ObOSCA1.1, Oryza glaberrima ortholog: OgOSCA1.1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0534900	LOC_Os01g35050.4, LOC_Os01g35050.3, LOC_Os01g35050.2, LOC_Os01g35050.1				GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	PO:0007022 - seed imbibition stage 
19652	OSCA1.2	OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2	Hyperosmolality-gated calcium-permeable channel 1.2, DUF221 Domain containing Protein 6	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2		5	OSCA1 homologue. KJ920372. LOC_Os05g51630. Oryza brachyantha ortholog: ObOSCA1.2, Oryza glaberrima ortholog: OgOSCA1.2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0594700	LOC_Os05g51630.2, LOC_Os05g51630.1				GO:0006970 - response to osmotic stress, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006560 - proline metabolic process, GO:0007623 - circadian rhythm, GO:0009414 - response to water deprivation, GO:0016020 - membrane	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	PO:0007022 - seed imbibition stage 
19653	OSCA1.4	OsOSCA1.4, OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.4	Hyperosmolality-gated calcium-permeable channel 1.4, DUF221 Domain containing Protein 8	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.4		10	OSCA1 homologue. KJ920374. LOC_Os10g42820. Oryza brachyantha ortholog: ObOSCA1.4, Oryza glaberrima ortholog: OgOSCA1.4.	 Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance	Os10g0579100	LOC_Os10g42820.2, LOC_Os10g42820.1				GO:0009506 - plasmodesma, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005794 - Golgi apparatus, GO:0009651 - response to salt stress, GO:0048316 - seed development	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
19654	OSCA2.1	OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1	Hyperosmolality-gated calcium-permeable channel 2.1, DUF221 Domain containing Protein 10	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1		12	OSCA1 homologue. KJ920375. LOC_Os12g43720. Oryza brachyantha ortholog: ObOSCA2.1, Oryza glaberrima ortholog: OgOSCA2.1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0633600	LOC_Os12g43720.1				GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0016020 - membrane, GO:0007623 - circadian rhythm, GO:0005886 - plasma membrane	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0007022 - seed imbibition stage 
19655	OSCA2.2	OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.2	Hyperosmolality-gated calcium-permeable channel 2.2, DUF221 Domain containing Protein 3	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.2		3	OSCA1 homologue. KJ920376. LOC_Os03g47070. Oryza brachyantha ortholog: ObOSCA2.2, Oryza glaberrima ortholog: OgOSCA2.2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0673800	LOC_Os03g47070.2, LOC_Os03g47070.1				GO:0016020 - membrane, GO:0007623 - circadian rhythm, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
19656	OSCA2.3	OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.3	Hyperosmolality-gated calcium-permeable channel 2.3, DUF221 Domain containing Protein 4	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.3		3	OSCA1 homologue. KJ920377. LOC_Os03g51620. Oryza brachyantha ortholog: ObOSCA2.3, Oryza glaberrima ortholog: OgOSCA2.3	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0726300	LOC_Os03g51620.1				GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0016020 - membrane	TO:0006001 - salt tolerance	
19657	OSCA2.4	OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.4	Hyperosmolality-gated calcium-permeable channel 2.4, DUF221 Domain containing Protein 9	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.4		12	OSCA1 homologue. KJ920378. LOC_Os12g39320. Oryza brachyantha ortholog: ObOSCA2.4, Oryza glaberrima ortholog: OgOSCA2.4	 Biochemical character,  Seed	Os12g0582800	LOC_Os12g39320.1				GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0048316 - seed development, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
19658	ERD4	OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2	EARLY RESPONSIVE TO DEHYDRATION 4	Hyperosmolality-gated calcium-permeable channel 3.1, OSCA channels 3.1, Early Responsive to Dehydration 4, DUF221 Domain containing Protein 7	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 3.1		7	OSCA1 homologue. KJ920380. Oryza brachyantha ortholog: ObOSCA3.1, Oryza glaberrima ortholog: OgOSCA3.1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0150100	LOC_Os07g05570.2, LOC_Os07g05570.1				GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0009941 - chloroplast envelope, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
19659	OSCA4.1	OsOSCA4.1, OsIOSCA4.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1	Hyperosmolality-gated calcium-permeable channel 4.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1		3	OSCA1 homologue. KJ920381. LOC_Os03g04450. Oryza brachyantha ortholog: ObOSCA4.1, two orthologues of OSCA4.1 in Oryza glaberrima: OgOSCA4.1_1 and OgOSCA4.1_2.	 Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance	Os03g0137400	LOC_Os03g04450.1				GO:0006623 - protein targeting to vacuole, GO:0048316 - seed development, GO:0005622 - intracellular, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0016020 - membrane, GO:0006001 - fructose catabolic process	TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait, TO:0000095 - osmotic response sensitivity	PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
19660	_	OsGAP1, GAP1	_	GTPase-activating protein 1			2	Q6YWF1. EF584506. a plant-specific C2-domain protein. GO:1902479: positive regulation of defense response to bacterium, incompatible interaction. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0327000	LOC_Os02g22130.1				GO:0009738 - abscisic acid mediated signaling, GO:0046872 - metal ion binding, GO:0043547 - positive regulation of GTPase activity, GO:0042742 - defense response to bacterium, GO:0010039 - response to iron ion, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0008289 - lipid binding, GO:0006952 - defense response, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0005096 - GTPase activator activity	TO:0006001 - salt tolerance, TO:0000315 - bacterial disease resistance, TO:0000224 - iron sensitivity, TO:0000112 - disease resistance	
19661	_	PPR1	_	pentatricopeptide repeat motif containing gene 1, PPR motif-containing gene 1			10	LOC_Os10g35090.		Os10g0493100 	LOC_Os10g35090.1						
19662	_	PPR8	_	pentatricopeptide repeat motif containing gene 8, PPR motif-containing gene 8			10	LOC_Os10g35730.		Os10g0501000 	LOC_Os10g35730.1				GO:0005739 - mitochondrion		
19663	_	PPR9	_	pentatricopeptide repeat motif containing gene 9, PPR motif-containing gene 9			10	LOC_Os10g35750.		Os10g0501200 	LOC_Os10g35750.1						
19664	_	PPR10	_	pentatricopeptide repeat motif containing gene 10, PPR motif-containing gene 10			10	LOC_Os10g35760.		Os10g0501300	LOC_Os10g35760.2, LOC_Os10g35760.1						
19665	_	PPR11	_	pentatricopeptide repeat motif containing gene 11, PPR motif-containing gene 11			10	LOC_Os10g35790.		Os10g0501700 	LOC_Os10g35790.1						
19666	_	PPR12	_	pentatricopeptide repeat motif containing gene 12, PPR motif-containing gene 12			10	LOC_Os10g36190.		Os10g0506000 	LOC_Os10g36190.1						
19667	_	PPR13	_	pentatricopeptide repeat motif containing gene 13, PPR motif-containing gene 13			10	LOC_Os10g40920.		Os10g0558600 	LOC_Os10g40920.1						
19668	_		_	rice DJA5 homolog			3	a Homolog of Arabidopsis chloroplast J protein. LOC_Os03g12236.		Os03g0222700	LOC_Os03g12236.2, LOC_Os03g12236.1						
19669	_		_	rice DJA7 homolog			5	a Homolog of Arabidopsis chloroplast J protein. LOC_Os05g26914 (not found in MSU Rice Genome Annotation Project Release 7 data) .									
19670	_		_	rice DJC75 homolog			11	a Homolog of Arabidopsis chloroplast J protein. LOC_Os11g10990.		Os11g0216100 	LOC_Os11g10990.1				GO:0009507 - chloroplast		
19671	_		_				10	a rice ortholog of Arabidopsis EFR.	 Biochemical character	Os10g0337400	LOC_Os10g19160.1				GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0046777 - protein amino acid autophosphorylation, GO:0009755 - hormone-mediated signaling, GO:0005886 - plasma membrane, GO:0031625 - ubiquitin protein ligase binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0001653 - peptide receptor activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0009506 - plasmodesma		
19672	_	Xa21, OsXA21, OsXA21-C11, XA21-C11	_	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 21			11	U37133. AY885769-AY885800 and DQ374726-DQ374747  (O. sativa and other wild rice species, partial cds).  a putative leucine-rich repeat receptor-like serine/threonine-protein kinase.							GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19673	_		_				7	a rice ortholog of Arabidopsis GSO1/GSO2.		Os07g0498400	LOC_Os07g31500.1				GO:0046777 - protein amino acid autophosphorylation, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0009755 - hormone-mediated signaling, GO:0031625 - ubiquitin protein ligase binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0001653 - peptide receptor activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
19674	PEPR1	OsPEPR1	PEP RECEPTOR 1	Pep receptor 1	PEP RECEPTOR 1		8	a rice ortholog of Arabidopsis PEPR1.	 Tolerance and resistance - Insect resistance	Os08g0446200	LOC_Os08g34640.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0009625 - response to insect, GO:0004674 - protein serine/threonine kinase activity	TO:0000261 - insect damage resistance	
19675	_		_				1	a rice ortholog of Arabidopsis HAESA.		Os01g0239700	LOC_Os01g13800.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0046777 - protein amino acid autophosphorylation, GO:0031625 - ubiquitin protein ligase binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0001653 - peptide receptor activity, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0009755 - hormone-mediated signaling		
19676	_		_				2	a rice ortholog of Petunia inflata PRK1. a rice ortholog of D. carota PRK.		Os02g0629400 	LOC_Os02g41890.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19677	_		_				7	a rice ortholog of Arabidopsis RPK1.		Os07g0602700	LOC_Os07g41140.1				GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19678	_		_				5	a rice ortholog of Arabidopsis SIRK.		Os05g0525600 	LOC_Os05g44990.1				GO:0001653 - peptide receptor activity, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0046777 - protein amino acid autophosphorylation, GO:0009755 - hormone-mediated signaling, GO:0031625 - ubiquitin protein ligase binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0009506 - plasmodesma, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
19679	_		_				2	a rice ortholog of Arabidopsis SCM.		Os02g0136900	LOC_Os02g04430.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
19680	_	Gsp-1, GSP-1	_	grain softness protein 1				HE663227.									
19681	_	Ord	_	oxidoreductase			10	KC611153-KC611163 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os10g0403700	LOC_Os10g26400.2, LOC_Os10g26400.1, LOC_Os10g26390.1				GO:0016491 - oxidoreductase activity		
19682	_	RbH	_				11	KC610964-KC610976 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os11g0153900	LOC_Os11g05570.1				GO:0004523 - ribonuclease H activity, GO:0003723 - RNA binding		
19683	_	CCR1, OsCCR1, OsCCR12, CCR12	_	cinnamoyl-CoA reductase 1, cinnamoyl-CoA reductase 12			2	LOC_Os02g56680. KC610831-KC610843 (O. sativa and wild rice species, partial ads). OsCCR12 in Park et al. 2017.	 Biochemical character	Os02g0811400	LOC_Os02g56680.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
19684	_	AGM1	_				7	KC609217-KC609229 (O. sativa and wild rice species, partial cds). Q6ZDQ1. 	 Biochemical character	Os07g0195400	LOC_Os07g09720.1				GO:0000287 - magnesium ion binding, GO:0004610 - phosphoacetylglucosamine mutase activity, GO:0005975 - carbohydrate metabolic process, GO:0000719 - photoreactive repair, GO:0009411 - response to UV, GO:0006048 - UDP-N-acetylglucosamine biosynthetic process, GO:0005829 - cytosol, GO:0005739 - mitochondrion, GO:0009506 - plasmodesma		
19685	_	ATL3I, OsHIGD1, HIGD1	_	Hypoxia-Induced Gene Domain 1, Hypoxia-Induced Gene Domain Protein 1			9	KC609197-KC609206 (O. sativa and wild rice species, partial cds). LOC_Os09g20900.		Os09g0375900	LOC_Os09g20900.1				GO:0016021 - integral to membrane		PO:0009010 - seed , PO:0025034 - leaf 
19686	_	Arf75	_	auxin response factor 75			3	KC609120-KC609132 (O. sativa and wild rice species, intron 7). GO:0071479: cellular response to ionizing radiation. GO:0090305: nucleic acid phosphodiester bond hydrolysis.		Os03g0345100	LOC_Os03g22450.1				GO:0006281 - DNA repair, GO:0000076 - DNA replication checkpoint, GO:0031573 - intra-S DNA damage checkpoint, GO:0030896 - checkpoint clamp complex, GO:0008408 - 3'-5' exonuclease activity		
19687	_	Dad	_	dihydroxy-acid dehydratase			8	KC609061-KC609073 (O. sativa and wild rice species, partial cds). 	 Biochemical character	Os08g0559600	LOC_Os08g44530.1				GO:0004160 - dihydroxy-acid dehydratase activity, GO:0009082 - branched chain family amino acid biosynthetic process, GO:0009555 - pollen development, GO:0009220 - pyrimidine ribonucleotide biosynthetic process, GO:0009570 - chloroplast stroma, GO:0005507 - copper ion binding		
19688	_	Amt	_	aminomethyltransferase			4	KC609048-KC609060 (O. sativa and wild rice species, intron 1). 	 Biochemical character	Os04g0623800	LOC_Os04g53230.1				GO:0008483 - transaminase activity, GO:0016020 - membrane, GO:0022626 - cytosolic ribosome, GO:0009534 - chloroplast thylakoid, GO:0009941 - chloroplast envelope, GO:0048046 - apoplast, GO:0010015 - root morphogenesis, GO:0010075 - regulation of meristem growth, GO:0008361 - regulation of cell size, GO:0007389 - pattern specification process, GO:0048481 - ovule development, GO:0042744 - hydrogen peroxide catabolic process, GO:0040007 - growth, GO:0006546 - glycine catabolic process, GO:0019344 - cysteine biosynthetic process, GO:0009658 - chloroplast organization, GO:0016117 - carotenoid biosynthetic process, GO:0009926 - auxin polar transport, GO:0004047 - aminomethyltransferase activity, GO:0009570 - chloroplast stroma		
19689	_	BEL1, OsBEL, BEL	_	bell-like homeodomain protein, BELL1 homolog			6	KC609035-KC609047 (O. sativa and wild rice species, partial cds). AB218895.	 Other	Os06g0108900	LOC_Os06g01934.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
19690	_	OsLecRK2, LecRK2	_	Lectin Receptor Kinase 2			4	KF748965-KF748972 (indica). LOC_Os04g12560. Os04g0202350 (in Ncbi and UniProt).	 Tolerance and resistance - Insect resistance	Os04g0202300	LOC_Os04g12560.1				GO:0009755 - hormone-mediated signaling, GO:0009506 - plasmodesma, GO:0001653 - peptide receptor activity, GO:0002213 - defense response to insect, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0031625 - ubiquitin protein ligase binding, GO:0046777 - protein amino acid autophosphorylation	TO:0000424 - brown planthopper resistance	
19691	_	OsLecRK paralog	_	Lectin Receptor Kinase paralog			6	LOC_Os06g41560. one of two paralogous genes sharing the highest sequence similarities to OsLecRK1-OsLecRK4.		Os06g0620200	LOC_Os06g41560.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0046777 - protein amino acid autophosphorylation, GO:0031625 - ubiquitin protein ligase binding, GO:0009755 - hormone-mediated signaling, GO:0009506 - plasmodesma, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0001653 - peptide receptor activity		
19692	_	OsLecRK paralog	_	Lectin Receptor Kinase paralog			8	LOC_Os08g13420. one of two paralogous genes sharing the highest sequence similarities to OsLecRK1-OsLecRK4.		Os08g0230800 	LOC_Os08g13420.1				GO:0001653 - peptide receptor activity, GO:0048544 - recognition of pollen, GO:0046777 - protein amino acid autophosphorylation, GO:0031625 - ubiquitin protein ligase binding, GO:0009755 - hormone-mediated signaling, GO:0009506 - plasmodesma, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity		
19693	MIR169R	miR169r, osa-miR169r, osa-MIR169r, osa-miR169r-3p osa-miR169r-5p	MICRORNA169R	MICRORNA169r, osa-miRNA169r	_		3	miRBASE accession: MI0006973. LM380732, LM383206.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19694	MIR1861O	miR1861o, osa-miR1861o, osa-MIR1861o	MICRORNA1861O	osa-miRNA1861o	_			miRBASE accession: MI0026006. LM383294.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19695	MIR1862F	miR1862f, osa-miR1862f, osa-MIR1862f	MICRORNA1862F	MICRORNA1862f, osa-miRNA1862f	_			miRBASE accession: MI0017248. LM382517.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19696	MIR3980A	miR3980a, osa-miR3980a, osa-MIR3980a, osa-miR3980a-3p, osa-miR3980a-5p	MICRORNA3980A	MICRORNA3980a, osa-miRNA3980a	_			miRBASE accession: MI0017252. LM382522, LM382521.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19697	MIR3980B	miR3980b, osa-miR3980b, osa-MIR3980b, osa-miR3980a-3p, osa-miR3980a-5p	MICRORNA3980B	MICRORNA3980b, osa-miRNA3980b	_			miRBASE accession: MI0017253. LM382524, LM382523.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19698	MIR5490	miR5490, Osa-miR5490, OsmiR5490	MICRORNA5490	MICRORNA5490, osa-miRNA5490, os-miRNA5490	_		11	miRBASE accession: MI0019008. LM382918.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19699	MIR5493	miR5493, Osa-miR5493, OsmiR5493	MICRORNA5493	MICRORNA5493, osa-miRNA5493, os-miRNA5493	_		2	miRBASE accession: MI0019011. LM382919.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19700	MIR5498	miR5498, Osa-miR5498, OsmiR5498	MICRORNA5498	MICRORNA5498, osa-miRNA5498, os-miRNA5498	_		4	miRBASE accession: MI0019016. LM382920.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19701	MIR5502	miR5502, Osa-miR5502, OsmiR5502	MICRORNA5502	MICRORNA5502, osa-miRNA5502, os-miRNA5502	_		5	miRBASE accession: MI0019020. LM382921.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19702	MIR5503	miR5503, Osa-miR5503, OsmiR5503	MICRORNA5503	MICRORNA5503, osa-miRNA5503, os-miRNA5503	_		8	miRBASE accession: MI0019021. LM382922.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19703	MIR5504	miR5504, Osa-miR5504, OsmiR5504	MICRORNA5504	MICRORNA5504, osa-miRNA5504, os-miRNA5504	_		10	miRBASE accession: MI0019022. LM382923.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19704	MIR5505	miR5505, Osa-miR5505, OsmiR5505	MICRORNA5505	MICRORNA5505, osa-miRNA5505, os-miRNA5505	_		12	miRBASE accession: MI0019023. LM382924.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19705	MIR5512A	miR5512a, Osa-miR5512a, OsmiR5512a	MICRORNA5512A	MICRORNA5512a, osa-miRNA5512a, os-miRNA5512a	_		4	miRBASE accession: MI0019030. LM382926.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19706	MIR5522	miR5522, Osa-miR5522, OsmiR5522	MICRORNA5522	MICRORNA5522, osa-miRNA5522, os-miRNA5522	_		4	miRBASE accession: MI0019041. LM382928.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19707	MIR5525	miR5525, Osa-miR5525, OsmiR5525	MICRORNA5525	MICRORNA5525, osa-miRNA5525, os-miRNA5525	_		9	miRBASE accession: MI0019045. LM382929.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19708	MIR5526	miR5526, Osa-miR5526, OsmiR5526	MICRORNA5526	MICRORNA5526, osa-miRNA5526, os-miRNA5526	_		10	miRBASE accession: MI0019046. LM382930.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19709	MIR5532	miR5532, Osa-miR5532, OsmiR5532	MICRORNA5532	MICRORNA5532, osa-miRNA5532, os-miRNA5532	_		4	miRBASE accession: MI0019052. LM382931.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19710	MIR5534A	miR5534a, Osa-miR5534a, OsmiR5534a	MICRORNA5534A	MICRORNA5534a, osa-miRNA5534a, os-miRNA5534a	_		11	miRBASE accession: MI0019054. LM382932.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19711	MIR5535	miR5535, Osa-miR5535, OsmiR5535	MICRORNA5535	MICRORNA5535, osa-miRNA5535, os-miRNA5535	_		12	miRBASE accession: MI0019056. LM382933.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19712	MIR5536	miR5536, Osa-miR5536, OsmiR5536	MICRORNA5536	MICRORNA5536, osa-miRNA5536, os-miRNA5536	_		9	miRBASE accession: MI0019057. LM382934.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19713	MIR5537	miR5537, Osa-miR5537, OsmiR5537	MICRORNA5537	MICRORNA5537, osa-miRNA5537, os-miRNA5537	_		10	miRBASE accession: MI0019058. LM382935.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19714	MIR5538	miR5538, Osa-miR5538, OsmiR5538	MICRORNA5538	MICRORNA5538, osa-miRNA5538, os-miRNA5538	_		10	miRBASE accession: MI0019059. LM382936.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19715	MIR5539A	miR5539a, Osa-miR5539a, OsmiR5539a	MICRORNA5539A	MICRORNA5539a, osa-miRNA5539a, os-miRNA5539a	_		12	miRBASE accession: MI0019060. LM382937.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19716	MIR5539B	miR5539b, Osa-miR5539b, OsmiR5539b	MICRORNA5539B	MICRORNA5539b, osa-miRNA5539b, os-miRNA5539b	_		12	miRBASE accession: MI0026008. LM383295.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19717	MIR5540	miR5540, Osa-miR5540, OsmiR5540	MICRORNA5540	MICRORNA5540, osa-miRNA5540, os-miRNA5540	_		1	miRBASE accession: MI0019061. LM382938.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19718	MIR5542	miR5542, Osa-miR5542, OsmiR5542	MICRORNA5542	MICRORNA5542, osa-miRNA5542, os-miRNA5542	_		4	miRBASE accession: MI0019063. LM382939.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19719	MIR6249B	miR6249b, Osa-miR6249b, OsmiR6249b	MICRORNA6249B	MICRORNA6249b, osa-miRNA6249b, os-miRNA6249b	_		4	miRBASE accession: MI0026009. LM383296.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19720	MIR812K	miR812k, Osa-miR812k, OsmiR812k	MICRORNA812K	MICRORNA812k, osa-miRNA812k, os-miRNA812k	_			miRBASE accession: MI0017245. LM382514.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19721	MIR812L	miR812l, Osa-miR812l, OsmiR812l	MICRORNA812L	MICRORNA812l, osa-miRNA812l, os-miRNA812l	_			miRBASE accession: MI0017246. LM382515.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19722	MIR812O	miR812o, Osa-miR812o, OsmiR812o, osa-miR812o-3p osa-miR812o-5p	MICRORNA812O	MICRORNA812o, osa-miRNA812o, os-miRNA812o	_			miRBASE accession: MI0017255. LM382528, LM382527.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19723	MIR1437B	miR1437b, osa-miR1437b, osa-MIR1437b	MICRORNA1437B	MICRORNA1437b, osa-miRNA1437b	_		8	miRBASE accession: MI0025198.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19724	MIR7692	miR7692, osa-miR7692, osa-MIR7692	MICRORNA7692	MICRORNA7692, osa-miRNA7692	_		1	miRBASE accession: MI0025199.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19725	MIR7693	miR7693, osa-miR7693, osa-MIR7693	MICRORNA7693	MICRORNA7693, osa-miRNA7693	_		12	miRBASE accession: MI0025200.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19726	MIR7694	miR7694, osa-miR7694, osa-MIR7694	MICRORNA7694	MICRORNA7694, osa-miRNA7694	_		10	miRBASE accession: MI0025201.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19727	MIR7695	miR7695, osa-miR7695, osa-MIR7695	MICRORNA7695	MICRORNA7695, osa-miRNA7695	_		1	miRBASE accession: MI0025202. miR7695 negatively regulates the expression of the shortest transcript variant of Nramp6 (Campo et al. 2013). GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Other						GO:0035195 - gene silencing by miRNA, GO:0051707 - response to other organism, GO:0006379 - mRNA cleavage, GO:0009814 - defense response, incompatible interaction, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex	TO:0000112 - disease resistance, TO:0000074 - blast disease	
19728	MIR169Q	miR169q, osa-miR169q, osa-MIR169q	MICRORNA169Q	MICRORNA169q, osa-miRNA169q	_		8	miRBASE accession: MI0025202.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0051707 - response to other organism, GO:0006379 - mRNA cleavage, GO:0009814 - defense response, incompatible interaction, GO:0016442 - RNA-induced silencing complex	TO:0000112 - disease resistance	
19729	MIR2907A	miR2907a, osa-miR2907a, osa-MIR2907a	MICRORNA2907A	MICRORNA2907a, osa-miRNA2907a	_		3	miRBASE accession: MI0013247.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19730	MIR2275C	miR2275c, osa-miR2275c, osa-MIR2275c	MICRORNA2275C	MICRORNA2275c, osa-miRNA2275c	_		7	miRBASE accession: MI0019032.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19731	MIR5484	miR5484, osa-miR5484, osa-MIR5484	MICRORNA5484	MICRORNA5484, osa-miRNA5484	_		2	miRBASE accession: MI0019002.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19732	MIR5486	miR5486, osa-miR5486, osa-MIR5486	MICRORNA5486	MICRORNA5486, osa-miRNA5486	_		3	miRBASE accession: MI0019004.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19733	MIR5487	miR5487, osa-miR5487, osa-MIR5487	MICRORNA5487	MICRORNA5487, osa-miRNA5487	_		4	miRBASE accession: MI0019005.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19734	MIR5489	miR5489, osa-miR5489, osa-MIR5489	MICRORNA5489	MICRORNA5489, osa-miRNA5489	_		11	miRBASE accession: MI0019007.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19735	MIR5492	miR5492, osa-miR5492, osa-MIR5492	MICRORNA5492	MICRORNA5492, osa-miRNA5492	_		6	miRBASE accession: MI0019010.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19736	MIR5494	miR54924, osa-miR5494, osa-MIR5494	MICRORNA5494	MICRORNA5494, osa-miRNA5494	_		1	miRBASE accession: MI0019012.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19737	MIR5495	miR54925, osa-miR5495, osa-MIR5495	MICRORNA5495	MICRORNA5495, osa-miRNA5495	_		2	miRBASE accession: MI0019013.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19738	MIR5496	miR54926, osa-miR5496, osa-MIR5496	MICRORNA5496	MICRORNA5496, osa-miRNA5496	_		2	miRBASE accession: MI0019014.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19739	MIR5497	miR54927, osa-miR5497, osa-MIR5497	MICRORNA5497	MICRORNA5497, osa-miRNA5497	_		3	miRBASE accession: MI0019015.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19740	MIR5499	miR54929, osa-miR5499, osa-MIR5499	MICRORNA5499	MICRORNA5499, osa-miRNA5499	_		4	miRBASE accession: MI0019017.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19741	MIR5500	miR5500, osa-miR5500, osa-MIR5500	MICRORNA5500	MICRORNA5500, osa-miRNA5500	_		4	miRBASE accession: MI0019018.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19742	MIR5501	miR5501, osa-miR5501, osa-MIR5501	MICRORNA5501	MICRORNA5501, osa-miRNA5501	_		4	miRBASE accession: MI0019019.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19743	MIR5506	miR5506, osa-miR5506, osa-MIR5506	MICRORNA5506	MICRORNA5506, osa-miRNA5506	_		12	miRBASE accession: MI0019024.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19744	MIR5507	miR5507, osa-miR5507, osa-MIR5507	MICRORNA5507	MICRORNA5507, osa-miRNA5507	_		12	miRBASE accession: MI0019025.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19745	MIR5509	miR5509, osa-miR5509, osa-MIR5509	MICRORNA5509	MICRORNA5509, osa-miRNA5509	_		11	miRBASE accession: MI0019027.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19746	MIR5510	miR5510, osa-miR5510, osa-MIR5510	MICRORNA5510	MICRORNA5510, osa-miRNA5510	_		12	miRBASE accession: MI0019028.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19747	MIR5511	miR5511, osa-miR5511, osa-MIR5511	MICRORNA5511	MICRORNA5511, osa-miRNA5511	_		4	miRBASE accession: MI0019029.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19748	MIR5514	miR5514, osa-miR5514, osa-MIR5514	MICRORNA5514	MICRORNA5514, osa-miRNA5514	_		2	miRBASE accession: MI0019033.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19749	MIR5515	miR5515, osa-miR5515, osa-MIR5515	MICRORNA5515	MICRORNA5515, osa-miRNA5515	_		4	miRBASE accession: MI0019034.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19750	MIR5517	miR5517, osa-miR5517, osa-MIR5517	MICRORNA5517	MICRORNA5517, osa-miRNA5517	_		6	miRBASE accession: MI0019036.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19751	MIR5518	miR5518, osa-miR5518, osa-MIR5518	MICRORNA5518	MICRORNA5518, osa-miRNA5518	_		7	miRBASE accession: MI0019037.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19752	MIR5521	miR5521, osa-miR5521, osa-MIR5521	MICRORNA5521	MICRORNA5521, osa-miRNA5521	_		1	miRBASE accession: MI0019040.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19753	MIR5523	miR5523, osa-miR5523, osa-MIR5523	MICRORNA5523	MICRORNA5523, osa-miRNA5523	_		4	miRBASE accession: MI0019042.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19754	MIR5524	miR5524, osa-miR5524, osa-MIR5524	MICRORNA5524	MICRORNA5524, osa-miRNA5524	_		9	miRBASE accession: MI0019044.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19755	MIR5527	miR5527, osa-miR5527, osa-MIR5527	MICRORNA5527	MICRORNA5527, osa-miRNA5527	_		11	miRBASE accession: MI0019047.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19756	MIR5528	miR5528, osa-miR5528, osa-MIR5528	MICRORNA5528	MICRORNA5528, osa-miRNA5528	_		11	miRBASE accession: MI0019048.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19757	MIR5529	miR5529, osa-miR5529, osa-MIR5529	MICRORNA5529	MICRORNA5529, osa-miRNA5529	_		11	miRBASE accession: MI0019049.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19758	MIR5530	miR5530, osa-miR5530, osa-MIR5530	MICRORNA5530	MICRORNA5530, osa-miRNA5530	_		12	miRBASE accession: MI0019050.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19759	MIR5531	miR5531, osa-miR5531, osa-MIR5531	MICRORNA5531	MICRORNA5531, osa-miRNA5531	_		3	miRBASE accession: MI0019051.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19760	MIR5534B	miR5534b, osa-miR5534b, osa-MIR5534b	MICRORNA5534B	MICRORNA5534b, osa-miRNA5534b	_		11	miRBASE accession: MI0019055.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19761	MIR5541	miR5541, osa-miR5541, osa-MIR5541	MICRORNA5541	MICRORNA5541, osa-miRNA5541	_		2	miRBASE accession: MI0019062.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19762	MIR5543	miR5543, osa-miR5543, osa-MIR5543	MICRORNA5543	MICRORNA5543, osa-miRNA5543	_		4	miRBASE accession: MI0019064.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19763	MIR5544	miR5544, osa-miR5544, osa-MIR5544	MICRORNA5544	MICRORNA5544, osa-miRNA5544	_		2	miRBASE accession: MI0019065.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19764	MIR5790	miR5790, osa-miR5790, osa-MIR5790	MICRORNA5790	MICRORNA5790, osa-miRNA5790	_		11	miRBASE accession: MI0019802.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19765	MIR531C	miR531c, osa-miR531c, osa-MIR531c	MICRORNA531C	MICRORNA531c, osa-miRNA531c	_		11	miRBASE accession: MI0026010.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19766	MIR2907B	miR2907b, osa-miR2907b, osa-MIR2907b	MICRORNA2907B	MICRORNA2907b, osa-miRNA2907b	_		11	miRBASE accession: MI0013248.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19767	MIR2907C	miR2907c, osa-miR2907c, osa-MIR2907c	MICRORNA2907C	MICRORNA2907c, osa-miRNA2907c	_		11	miRBASE accession: MI0013249.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19768	MIR2907D	miR2907d, osa-miR2907d, osa-MIR2907d	MICRORNA2907D	MICRORNA2907d, osa-miRNA2907d	_		12	miRBASE accession: MI0013250.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19769	MIR5079B	miR5079b, osa-miR5079b, osa-MIR5079b	MICRORNA5079B	MICRORNA5079b, osa-miRNA5079b	_		10	miRBASE accession: MI0026007.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19770	MIR1440B	miR1440b, osa-miR1440b, osa-MIR1440b	MICRORNA1440B	MICRORNA1440b, osa-miRNA1440b	_		9	miRBASE accession: MI0021593.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19771	MIR2918	miR2918, osa-miR2918, osa-MIR2918	MICRORNA2918	MICRORNA2918, osa-miRNA2918	_		6	miRBASE accession: MI0013260.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19772	MIR2919	miR2919, osa-miR2919, osa-MIR2919	MICRORNA2919	MICRORNA2919, osa-miRNA2919	_		5	miRBASE accession: MI0013261.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19773	MIR2920	miR2920, osa-miR2920, osa-MIR2920	MICRORNA2920	MICRORNA2920, osa-miRNA2920	_		7	miRBASE accession: MI0013262.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19774	MIR2921	miR2921, osa-miR2921, osa-MIR2921	MICRORNA2921	MICRORNA2921, osa-miRNA2921	_		11	miRBASE accession: MI0013263.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19775	MIR2922	miR2922, osa-miR2922, osa-MIR2922	MICRORNA2922	MICRORNA2922, osa-miRNA2922	_		10	miRBASE accession: MI0013264.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19776	MIR2923	miR2923, osa-miR2923, osa-MIR2923	MICRORNA2923	MICRORNA2923, osa-miRNA2923	_		11	miRBASE accession: MI0013265.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19777	MIR2924	miR2924, osa-miR2924, osa-MIR2924	MICRORNA2924	MICRORNA2924, osa-miRNA2924	_		1	miRBASE accession: MI0013266.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19778	MIR2925	miR2925, osa-miR2925, osa-MIR2925	MICRORNA2925	MICRORNA2925, osa-miRNA2925	_		1	miRBASE accession: MI0013267.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19779	MIR2926	miR2926, osa-miR2926, osa-MIR2926	MICRORNA2926	MICRORNA2926, osa-miRNA2926	_		6	miRBASE accession: MI0013268.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19780	MIR2927	miR2927, osa-miR2927, osa-MIR2927	MICRORNA2927	MICRORNA2927, osa-miRNA2927	_		1	miRBASE accession: MI0013269.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19781	MIR2928	miR2928, osa-miR2928, osa-MIR2928	MICRORNA2928	MICRORNA2928, osa-miRNA2928	_		2	miRBASE accession: MI0013270.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19782	MIR2929	miR2929, osa-miR2929, osa-MIR2929	MICRORNA2929	MICRORNA2929, osa-miRNA2929	_		10	miRBASE accession: MI0013271.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19783	MIR2930	miR2930, osa-miR2930, osa-MIR2930	MICRORNA2930	MICRORNA2930, osa-miRNA2930	_		6	miRBASE accession: MI0013272.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19784	MIR2931	miR2931, osa-miR2931, osa-MIR2931	MICRORNA2931	MICRORNA2931, osa-miRNA2931	_		6	miRBASE accession: MI0013273.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19785	MIR2932	miR2932, osa-miR2932, osa-MIR2932	MICRORNA2932	MICRORNA2932, osa-miRNA2932	_		10	miRBASE accession: MI0013274.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19786	MIR5337B	miR5337b, osa-miR5337b, osa-MIR5337b	MICRORNA5337B	MICRORNA5337b, osa-miRNA5337b	_		3	miRBASE accession: MI0021597.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19787	MIR5512B	miR5512b, osa-miR5512b, osa-MIR5512b	MICRORNA5512B	MICRORNA5512b, osa-miRNA5512b	_		4	miRBASE accession: MI0021599.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19788	MIR6245	miR6245, osa-miR6245, osa-MIR6245	MICRORNA6245	MICRORNA6245, osa-miRNA6245	_		2	miRBASE accession: MI0021592.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19789	MIR6246	miR6246, osa-miR6246, osa-MIR6246	MICRORNA6246	MICRORNA6246, osa-miRNA6246	_		3	miRBASE accession: MI0021594.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19790	MIR6247	miR6247, osa-miR6247, osa-MIR6247	MICRORNA6247	MICRORNA6247, osa-miRNA6247	_		7	miRBASE accession: MI0021595.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19791	MIR6248	miR6248, osa-miR6248, osa-MIR6248	MICRORNA6248	MICRORNA6248, osa-miRNA6248	_		3	miRBASE accession: MI0021596. predicted target: OsDDP10 (Os12g0633600).	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19792	MIR6249A	miR6249a, osa-miR6249a, osa-MIR6249a	MICRORNA6249A	MICRORNA6249a, osa-miRNA6249a	_		3	miRBASE accession: MI0021598.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19793	MIR6250	miR6250, osa-miR6250, osa-MIR6250	MICRORNA6250	MICRORNA6250, osa-miRNA6250	_		6	miRBASE accession: MI0021600. 	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19794	MIR6251	miR6251, osa-miR6251, osa-MIR6251	MICRORNA6251	MICRORNA6251, osa-miRNA6251	_		9	miRBASE accession: MI0021601. 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19795	MIR6252	miR6252, osa-miR6252, osa-MIR6252	MICRORNA6252	MICRORNA6252, osa-miRNA6252	_		12	miRBASE accession: MI0021602. 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19796	MIR6253	miR6253, osa-miR6253, osa-MIR6253	MICRORNA6253	MICRORNA6253, osa-miRNA6253	_		7	miRBASE accession: MI0021603. 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19797	MIR6254	miR6254, osa-miR6254, osa-MIR6254	MICRORNA6254	MICRORNA6254, osa-miRNA6254	_		12	miRBASE accession: MI0021604. 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19798	MIR6255	miR6255, osa-miR6255, osa-MIR6255	MICRORNA6255	MICRORNA6255, osa-miRNA6255	_		7	miRBASE accession: MI0021605. 	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19799	MIR6256	miR6256, osa-miR6256, osa-MIR6256	MICRORNA6256	MICRORNA6256, osa-miRNA6256	_		3	miRBASE accession: MI0021606. 	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19800	SCM1		STRONG CULM1	STRONG CULM 1			1		 Vegetative organ - Culm							TO:0000051 - stem strength, TO:0000339 - stem thickness	
19801	HRD3	OsHrd3, Hrd3	_	a homologue of yeast Hrd3/mammalian SEL1L			3	LOC_Os03g15350. an ER-resident type I membrane protein. Q10NT7. GO:0036503: ERAD pathway.	 Seed - Morphological traits - Endosperm,  Tolerance and resistance - Stress tolerance	Os03g0259300	LOC_Os03g15350.1				GO:0016021 - integral to membrane, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0042735 - protein body, GO:0000209 - protein polyubiquitination, GO:0005783 - endoplasmic reticulum, GO:0005789 - endoplasmic reticulum membrane		PO:0009089 - endosperm 
19802	HRD1	OsHrd1, Hrd1	_	a homologue of yeast Hrd1			6	Q5Z880. GO:0036503: ERAD pathway.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0301000	LOC_Os06g19680.2, LOC_Os06g19680.1				GO:0016874 - ligase activity, GO:0016567 - protein ubiquitination, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding		
19803	_	OsOS-9, OS-9, OS9	_	a homologue of yeast Yos-9p			6	Q67WM9.		Os06g0644800	LOC_Os06g43710.1				GO:0048193 - Golgi vesicle transport, GO:0005783 - endoplasmic reticulum, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0009644 - response to high light intensity, GO:0009408 - response to heat, GO:0030246 - carbohydrate binding, GO:0030244 - cellulose biosynthetic process, GO:0030433 - ER-associated protein catabolic process, GO:0006457 - protein folding, GO:0034976 - response to endoplasmic reticulum stress		
19805	_	pro13a.5	_				12	13 kDa prolamin. LOC_Os12g17010.	 Seed - Physiological traits - Storage substances	Os12g0269600	LOC_Os12g17010.1				GO:0005783 - endoplasmic reticulum, GO:0045735 - nutrient reservoir activity, GO:0042735 - protein body		PO:0009089 - endosperm 
19807	_	pro13b.4	_				7	13 kDa prolamin.	 Seed - Physiological traits - Storage substances	Os07g0220000 					GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
19808	_	pro13b.6	_				5	13 kDa prolamin. LOC_Os05g26250, Os05g0328466 (Saito et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0328466 	LOC_Os05g26400.1, LOC_Os05g26359.1, LOC_Os05g26250.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
19809	_	pro13b.7	_				5	13 kDa prolamin. LOC_Os05g26250, Os05g0328632 (Saito et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0328632 	LOC_Os05g26400.1, LOC_Os05g26359.1, LOC_Os05g26250.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
19811	_	pro13b.13	_				5	13 kDa prolamin. LOC_Os05g26400. Q0DJ45.	 Seed - Physiological traits - Storage substances	Os05g0329350 					GO:0005783 - endoplasmic reticulum, GO:0045735 - nutrient reservoir activity, GO:0042735 - protein body, GO:0033095 - aleurone grain, GO:0005773 - vacuole		PO:0009089 - endosperm 
19812	_	pro13b.15, PROLM11	_	Prolamin 11			5	13 kDa prolamin. LOC_Os05g26460. PROLM11 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os05g0329700 	LOC_Os05g26460.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
19813	_	pro13b.20	_				5	13 kDa prolamin. LOC_Os05g26720.	 Seed - Physiological traits - Storage substances	Os05g0331532	LOC_Os05g26720.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
19814	_	Os_CLE48, OsCLE48, CLE48	_	CLAVATA3/ENDOSPERM SURROUNDING REGION 48, CLV3/ESR-related 48, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 48			5	LOC_Os05g48730. GO:1902183: regulation of shoot apical meristem development.	 Vegetative organ - Shoot apical meristem(SAM)	Os05g0561300	LOC_Os05g48730.1				GO:0009733 - response to auxin stimulus	TO:0006020 - shoot apical meristem development, TO:0000163 - auxin sensitivity	PO:0020148 - shoot apical meristem 
19815	_	Os_CLE15, OsCLE15, CLE15	_	CLV3/ESR-related 15, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 15													
19816	_	Os_CLE24, OsCLE24, CLE24	_	CLV3/ESR-related 24, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 24													
19817	_	Os_CLE51, OsCLE51, CLE51	_	CLV3/ESR-related 51, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 51													
19818	_	Os_CLE46, OsCLE46, CLE46	_	CLV3/ESR-related 46, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 46													
19819	_	Os_CLE44, OsCLE44, CLE44	_	CLV3/ESR-related 44, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 44													
19820	_	Os_CLE49, OsCLE49, CLE49	_	CLV3/ESR-related 49, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 49													
19821	_	Os_CLE45, OsCLE45, CLE45	_	CLV3/ESR-related 45, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 45													
19822	_	Os_CLE43, OsCLE43, CLE43	_	CLV3/ESR-related 43, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 43													
19823	_	Os_CLE42, OsCLE42, CLE42	_	CLV3/ESR-related 42, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 42													
19824	_	Os_CLE47, OsCLE47, CLE47	_	CLV3/ESR-related 47, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 47													
19825	_	Os_CLE50, OsCLE50, CLE50	_	CLV3/ESR-related 50, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 50													
19826	_	Os_CLE71, OsCLE71, CLE71	_	CLV3/ESR-related 71, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 71													
19827	_	OsMYBc, MYBc	_	MYB coiled-coil type transcription factor		osmybc	9	LOC_Os09g12770.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0299200	LOC_Os09g12770.2, LOC_Os09g12770.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
19828	HAM2	OsHAM2, OsGRAS-8, OsGRAS8, GRAS-8, GRAS8	HAIRY MERISTEM 2	hairy meristem 2, GRAS protein 8	GRAS PROTEIN 8		2	GRAS (GAI-RGA-SCR) plant-specific transcription factor. 	 Reproductive organ - Heading date,  Other	Os02g0663100	LOC_Os02g44370.1				GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent	TO:0002616 - flowering time, TO:0006020 - shoot apical meristem development, TO:0006021 - vegetative to reproductive phase transition trait, TO:0000137 - days to heading	PO:0020148 - shoot apical meristem 
19829	HAM3	OsHAM3, OsGRAS-21, OsGRAS21, GRAS-21, GRAS21	HAIRY MERISTEM 3	hairy meristem 3, GRAS protein 21	GRAS PROTEIN 21		4	GRAS (GAI-RGA-SCR) plant-specific transcription factor. 	 Reproductive organ - Heading date,  Other	Os04g0555000	LOC_Os04g46860.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0006351 - transcription, DNA-dependent	TO:0000137 - days to heading, TO:0006020 - shoot apical meristem development, TO:0006021 - vegetative to reproductive phase transition trait, TO:0002616 - flowering time	PO:0020148 - shoot apical meristem 
19830	HAM4	OsHAM4	HAIRY MERISTEM 4	hairy meristem 4			6	GRAS (GAI-RGA-SCR) plant-specific transcription factor. Os06g0105200 (in Rap1 (build3), Rap3 (build5)).	 Reproductive organ - Heading date,  Other						GO:0048510 - regulation of timing of transition from vegetative to reproductive phase	TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0006021 - vegetative to reproductive phase transition trait, TO:0006020 - shoot apical meristem development	PO:0020148 - shoot apical meristem 
19832	PSD128	OsCDC48, CDC48, OsCDC48-1, CDC48-1	PREMATURE SENESCENCE AND DEATH 128	cell division cycle 48, premature senescence and death 128	CELL DIVISION CONTROL 48	psd128, HM128	3	KP718614, KP718613. LOC_Os03g05730. GO:0090398: cellular senescence. OsCDC48-1 in Qian et al. 2018. GO:0036503: ERAD pathway.	 Tolerance and resistance - Stress tolerance	Os03g0151800 	LOC_Os03g05730.1				GO:0051301 - cell division, GO:0016787 - hydrolase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0000325 - soluble protein content, TO:0002715 - chloroplast development trait, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content	
19833	CDC48E	OsCDC48E, OsCDC48-2, CDC48-2	CELL DIVISION CONTROL 48E	cell division cycle 48E	CELL DIVISION CONTROL 48E		10	one of the two isoforms of CDC48. OsCDC48-2 in Qian et al. 2018. GO:0036503: ERAD pathway.	 Tolerance and resistance - Stress tolerance	Os10g0442600	LOC_Os10g30580.2, LOC_Os10g30580.1				GO:0005524 - ATP binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
19834	GRAS23	OsGRAS23, OsGRAS-23, GRAS-23	GRAS PROTEIN 23	GRAS transcription factor 23, GRAS protein 23	GRAS PROTEIN 23		4		 Tolerance and resistance - Stress tolerance	Os04g0590400 	LOC_Os04g50060.2, LOC_Os04g50060.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0009753 - response to jasmonic acid stimulus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity	
19835	_	OsHIGD2, HIGD2	_	hypoxia induced protein, Hypoxia-Induced Gene Domain 2, Hypoxia-Induced Gene Domain Protein 2			7	LOC_Os07g47670. GO:0097249: mitochondrial respiratory chain super complex.	 Tolerance and resistance - Stress tolerance	Os07g0673900 	LOC_Os07g47670.2, LOC_Os07g47670.1				GO:0033617 - mitochondrial respiratory chain complex IV assembly, GO:0016021 - integral to membrane, GO:0031305 - integral to mitochondrial inner membrane, GO:0009723 - response to ethylene stimulus, GO:0005739 - mitochondrion, GO:0001666 - response to hypoxia, GO:0030912 - response to deep water	TO:0000015 - oxygen sensitivity, TO:0000173 - ethylene sensitivity, TO:0000524 - submergence tolerance	PO:0009005 - root , PO:0009010 - seed , PO:0020037 - mesocotyl , PO:0025034 - leaf 
19836	_	2-ODD8, Os2-ODD8, 2ODD8, Os2ODD8	_	leucoanthocyanidin dioxygenase, 2-oxoglutarate-dependent dioxygenase 8			3		 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0289800	LOC_Os03g18030.2, LOC_Os03g18030.1				GO:0006952 - defense response, GO:0005506 - iron ion binding, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0006979 - response to oxidative stress	TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait	
19837	1CYSPRXB	Os1-Cys Prx B, 1-Cys Prx B, Os1-CysPrxB, 1-CysPrxB	1-CYS PEROXIREDOXIN B	peroxiredoxin, 1 Cys-peroxiredoxin B	1-CYS PEROXIREDOXIN B		7	LOC_Os07g44440. ROS scavenging enzyme. P0C5D1. P0C5D0.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0638400 	LOC_Os07g44440.1				GO:0048364 - root development, GO:0051920 - peroxiredoxin activity, GO:0004601 - peroxidase activity, GO:0005634 - nucleus, GO:0006952 - defense response, GO:0006979 - response to oxidative stress	TO:0000168 - abiotic stress trait, TO:0000179 - biotic stress trait, TO:0000656 - root development trait	PO:0009005 - root , PO:0007520 - root development stage 
19838	_		_				12	proteinase inhibitor. LOC_Os12g36220. Os12g0548650 (in Ncbi and UniProt). 	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os12g0548501	LOC_Os12g36220.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0006979 - response to oxidative stress, GO:0006952 - defense response, GO:0009611 - response to wounding	TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait	
19839	_	OsRD29A, RD29A	_						 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
19840	_	OsHUB1, HUB1, SIP20	_	HISTONE MONOUBIQUITINATION1, HISTONE MONOUBIQUITINATION 1, SKIP interacting protein 20, SKIPa-interacting protein 20, SKIPa-interacting protein 20		oshub1, oshub1-1, oshub1-2	4	the homolog of Arabidopsis (Arabidopsis thaliana) HUB1 protein. LOC_Os04g46450. Q7XU27. EU368710.  Ubiquitin-ligase complex protein. 	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0550400 	LOC_Os04g46450.1				GO:0045492 - xylan biosynthetic process, GO:0010228 - vegetative to reproductive phase transition, GO:0010090 - trichome morphogenesis, GO:0010182 - sugar mediated signaling, GO:0007062 - sister chromatid cohesion, GO:0009845 - seed germination, GO:0016874 - ligase activity, GO:0010162 - seed dormancy, GO:0050826 - response to freezing, GO:0006396 - RNA processing, GO:0010389 - regulation of G2/M transition of mitotic cell cycle, GO:0010074 - maintenance of meristem identity, GO:0000278 - mitotic cell cycle, GO:0006406 - mRNA export from nucleus, GO:0000956 - nuclear-transcribed mRNA catabolic process, GO:0009640 - photomorphogenesis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010072 - primary shoot apical meristem specification, GO:0016926 - protein desumoylation, GO:0016579 - protein deubiquitination, GO:0003002 - regionalization, GO:0009909 - regulation of flower development, GO:0019915 - lipid storage, GO:0010413 - glucuronoxylan metabolic process, GO:0033523 - histone H2B ubiquitination, GO:0016571 - histone methylation, GO:0010390 - histone monoubiquitination, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009965 - leaf morphogenesis, GO:0048449 - floral organ formation, GO:0009880 - embryonic pattern specification, GO:0048589 - developmental growth, GO:0009817 - defense response to fungus, incompatible interaction, GO:0010388 - cullin deneddylation, GO:0048825 - cotyledon development, GO:0016049 - cell growth, GO:0051301 - cell division, GO:0007155 - cell adhesion, GO:0045010 - actin nucleation, GO:0008270 - zinc ion binding, GO:0004842 - ubiquitin-protein ligase activity, GO:0048573 - photoperiodism, flowering, GO:0009556 - microsporogenesis, GO:0048653 - anther development, GO:0009555 - pollen development, GO:0005634 - nucleus, GO:0005739 - mitochondrion	TO:0000137 - days to heading, TO:0000180 - spikelet fertility, TO:0000207 - plant height	PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
19841	_	OsHUB2, HUB2, FRRP1	_	HISTONE MONOUBIQUITINATION2, HISTONE MONOUBIQUITINATION 2, Flowering-Related RING Protein 1		oshub2	10	the homolog of Arabidopsis (Arabidopsis thaliana) HUB2 protein. LOC_Os10g41590. Q336R3.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0565600 	LOC_Os10g41590.2, LOC_Os10g41590.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0005634 - nucleus, GO:0007346 - regulation of mitotic cell cycle, GO:0008270 - zinc ion binding, GO:0009555 - pollen development, GO:0009556 - microsporogenesis, GO:0009965 - leaf morphogenesis, GO:0010162 - seed dormancy, GO:0010228 - vegetative to reproductive phase transition, GO:0010390 - histone monoubiquitination, GO:0016874 - ligase activity, GO:0033523 - histone H2B ubiquitination, GO:0043687 - post-translational protein modification, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0048573 - photoperiodism, flowering, GO:0048653 - anther development, GO:2000028 - regulation of photoperiodism, flowering	TO:0000734 - grain length, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000371 - yield trait	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
19842	_	OsLSD2	_				3	LOC_Os03g43840. Q6ASS2. one of the five AtLSD1 homologs in rice genome.		Os03g0639600	LOC_Os03g43840.1				GO:0005634 - nucleus		
19843	_	OsLSD3	_				8	LOC_Os08g03610. Q84UR0. one of the five AtLSD1 homologs in rice genome.		Os08g0130100 	LOC_Os08g03610.1				GO:0005634 - nucleus		
19844	_	OsLOL2	_				7	LOC_Os07g28910. Q69UP7. one of the five AtLSD1 homologs in rice genome.		Os07g0472200 	LOC_Os07g28910.1				GO:0005634 - nucleus		
19845	_	OsPILS1, PILS1	_	PIN likes 1			9	LOC_Os09g31478.	 Biochemical character	Os09g0491740 	LOC_Os09g31478.2, LOC_Os09g31478.1				GO:0055085 - transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
19846	_	OsPILS2, PILS2	_	PIN likes 2			8	LOC_Os08g09190.	 Biochemical character	Os08g0191000	LOC_Os08g09190.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
19847	_	OsPILS5, PILS5	_	PIN likes 5			7	LOC_Os07g20510.		Os07g0300200  	LOC_Os07g20510.1				GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
19848	_	OsPILS6a, PILS6a	_	PIN likes 6a			1	LOC_Os01g60230.	 Biochemical character	Os01g0818000	LOC_Os01g60230.4, LOC_Os01g60230.3, LOC_Os01g60230.1				GO:0055085 - transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
19849	_	OsPILS6b, PILS6b	_	PIN likes 6b			5	LOC_Os05g40330.	 Biochemical character	Os05g0481900 	LOC_Os05g40330.1				GO:0055085 - transmembrane transport, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
19850	_	OsPILS7a, PILS7a	_	PIN likes 7a			9		 Biochemical character	Os09g0554300 	LOC_Os09g38130.2, LOC_Os09g38130.1				GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
19851	_	OsPILS7b, PILS7b	_	PIN likes 7b			9	LOC_Os09g38210.	 Biochemical character	Os09g0555100 	LOC_Os09g38210.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
19852	ES1	TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1	EARLY SENESCENCE 1	early senescence 1, SCAR-like protein 2, suppressor of cAMP receptor 1	SCAR-LIKE PROTEIN 2	es1, es1-1, es1-2, tut1	1	LOC_Os01g11040. Q5QNA6. a component of the SCAR/WAVE complex. a Suppressor of cAMP Receptor-Like Protein. a suppressor of cAMP receptor/Wiskott-Aldrich syndrome protein family verprolin-homologous (SCAR/WAVE)-like protein. OsSCAR1 in Zhang et al. 2008, Bai et al. 2015. OsSCAR2 in Rao et al. 2015.	 Vegetative organ - Leaf,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0208600	LOC_Os01g11040.1				GO:0009555 - pollen development, GO:0005737 - cytoplasm, GO:0005856 - cytoskeleton, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0048653 - anther development, GO:0030036 - actin cytoskeleton organization, GO:0010229 - inflorescence development, GO:0010150 - leaf senescence, GO:0010148 - transpiration, GO:0010118 - stomatal movement	TO:0000276 - drought tolerance, TO:0000566 - stomatal frequency, TO:0000615 - abscisic acid sensitivity, TO:0000391 - seed size, TO:0000421 - pollen fertility, TO:0000621 - inflorescence development trait, TO:0001018 - transpiration rate, TO:0000522 - stomatal conductance, TO:0000249 - leaf senescence, TO:0000218 - pollen abortion type	PO:0001004 - anther development stage , PO:0001083 - inflorescence development stage , PO:0001007 - pollen development stage 
19853	_	OsTMM, TMM	_	TOO MANY MOUTHS			1	LOC_Os01g43440. a Leu-rich repeat receptor-like protein.		Os01g0623000 	LOC_Os01g43440.1				GO:0007165 - signal transduction, GO:0048443 - stamen development, GO:0002237 - response to molecule of bacterial origin, GO:0009737 - response to abscisic acid stimulus, GO:0008356 - asymmetric cell division, GO:0010103 - stomatal complex morphogenesis, GO:0031225 - anchored to membrane, GO:0042127 - regulation of cell proliferation	TO:0000566 - stomatal frequency	
19854	_	OsSDD1, SDD1, OsSub26, SUB26	_	"Subtilisin 26, SUBTILISIN 26, STOMATA DENSITY AND
DISTRIBUTION1, STOMATA DENSITY AND
DISTRIBUTION 1"			3	LOC_Os03g04950. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0143100 	LOC_Os03g04950.1				GO:0004252 - serine-type endopeptidase activity	TO:0000566 - stomatal frequency	
19855	PRXIIE2	Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2	PEROXIREDOXIN IIE2	peroxiredoxin IIE2, Type-II Prx E2, Type-II peroxiredoxin E2	PEROXIREDOXIN IIE2		2	LOC_Os02g09940. Q7F8S5.	 Biochemical character	Os02g0192700	LOC_Os02g09940.1				GO:0009570 - chloroplast stroma, GO:0004601 - peroxidase activity, GO:0051920 - peroxiredoxin activity		PO:0009006 - shoot system 
19856	_	GUN4, OsGUN4	_	Genome uncoupled 4, magnesium chelatase (Mg-chelatase) activating factor, magnesium chelatase accessory protein GUN4, magnesium-chelatase accessory protein GUN4		xantha, gun4	11		 Biochemical character,  Coloration - Chlorophyll	Os11g0267000	LOC_Os11g16550.1				GO:0046906 - tetrapyrrole binding, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009965 - leaf morphogenesis, GO:0006098 - pentose-phosphate shunt, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0043085 - positive regulation of catalytic activity, GO:0033014 - tetrapyrrole biosynthetic process, GO:0030154 - cell differentiation, GO:0015979 - photosynthesis, GO:0019344 - cysteine biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process, GO:0010207 - photosystem II assembly, GO:0010019 - chloroplast-nucleus signaling pathway, GO:0006364 - rRNA processing	TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0001015 - photosynthetic rate	
19857	YGL18 	ChlM, CHLM, MgMT	YELLOW-GREEN LEAF 18	Mg-Proto IX methyltransferase, Mg-protoporphyrin IX methyltransferase, yellow-green leaf 18		ygl18	6	LOC_Os06g04150.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os06g0132400	LOC_Os06g04150.1				GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009534 - chloroplast thylakoid, GO:0046777 - protein amino acid autophosphorylation, GO:0046406 - magnesium protoporphyrin IX methyltransferase activity, GO:0009648 - photoperiodism, GO:0009642 - response to light intensity, GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0009941 - chloroplast envelope, GO:0015995 - chlorophyll biosynthetic process, GO:0006364 - rRNA processing, GO:0010155 - regulation of proton transport	TO:0000495 - chlorophyll content, TO:0000075 - light sensitivity, TO:0000326 - leaf color	PO:0025034 - leaf 
19858	BG1	OsaBG1, OsBG1	BIG GRAIN1	big grain1, big grain 1		Bg1-D	3	LOC_Os03g07920. GO:0060918: auxin transport. PO:0000905: seed yield.	 Biochemical character,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0175800	LOC_Os03g07920.1				GO:0009630 - gravitropism, GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus	TO:0000396 - grain yield, TO:0002693 - gravity response trait, TO:0000397 - grain size, TO:0000181 - seed weight, TO:0000163 - auxin sensitivity	PO:0025205 - shoot system vascular system , PO:0005028 - inflorescence vascular system 
19859	_	LHP1, OsLHP1	_	LIKE HETEROCHROMATIN PROTEIN 1, LHP1 homolog			10	LOC_Os10g17770. Q339W7. chromatin regulator.		Os10g0324900	LOC_Os10g17770.1				GO:0051567 - histone H3-K9 methylation, GO:0006351 - transcription, DNA-dependent, GO:0006346 - methylation-dependent chromatin silencing, GO:0010016 - shoot morphogenesis, GO:0045857 - negative regulation of molecular function, epigenetic, GO:0016246 - RNA interference, GO:0007346 - regulation of mitotic cell cycle, GO:0048573 - photoperiodism, flowering, GO:0000956 - nuclear-transcribed mRNA catabolic process, GO:0003677 - DNA binding, GO:0009910 - negative regulation of flower development, GO:0003935 - GTP cyclohydrolase II activity, GO:0031048 - chromatin silencing by small RNA, GO:0005720 - nuclear heterochromatin, GO:0000791 - euchromatin, GO:0009825 - multidimensional cell growth, GO:0009507 - chloroplast, GO:0010048 - vernalization response		
19860	_	OsYchF1, YchF1, OsPM8ATP	_	YchF domain-containing protein 1			8	G-protein. Q6Z1J6. GO:1901001: negative regulation of response to salt stress. a homolog of Hemophilus influenzae YchF protein. a PM-type Ca2+-ATPase. P-loop NTPase. an unconventional G protein. TO:0006060: leaf chlorosis. GO:0072593: reactive oxygen species metabolic process. GO:1900425: negative regulation of defense response to bacterium. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0199300	LOC_Os08g09940.1				GO:0009651 - response to salt stress, GO:0009506 - plasmodesma, GO:0006623 - protein targeting to vacuole, GO:0003924 - GTPase activity, GO:0005524 - ATP binding, GO:0005525 - GTP binding, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0046872 - metal ion binding, GO:0043023 - ribosomal large subunit binding, GO:0006094 - gluconeogenesis, GO:0006096 - glycolysis, GO:0050832 - defense response to fungus, GO:0001906 - cell killing, GO:0042742 - defense response to bacterium, GO:0043022 - ribosome binding, GO:0016887 - ATPase activity	TO:0000315 - bacterial disease resistance, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000652 - leaf necrosis, TO:0000495 - chlorophyll content	
19861	_	OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MATL	_	Patatin-related phospholipase A II beta, MATRILINEAL, PHOSPHOLIPASE A1, NOT LIKE DAD		Osmatl	3	Q84QY3. a rice orthologue of ZmMATL.	 Biochemical character	Os03g0393900 	LOC_Os03g27610.1				GO:0004620 - phospholipase activity, GO:0047372 - acylglycerol lipase activity, GO:0016787 - hydrolase activity, GO:0006952 - defense response, GO:0016042 - lipid catabolic process	TO:0000180 - spikelet fertility	PO:0025281 - pollen 
19862	_	OspPLAIIgamma, pPLAIIgamma	_	Patatin-related phospholipase A II gamma			8	LOC_Os08g28880.	 Biochemical character	Os08g0376500	LOC_Os08g28880.1				GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process		
19863	_	OspPLAIIdelta, pPLAIIdelta	_	Patatin-related phospholipase A II delta			8	LOC_Os08g37180.	 Biochemical character	Os08g0476900 	LOC_Os08g37180.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19864	_	OspPLAIIepsilon, pPLAIIepsilon	_	Patatin-related phospholipase A II epsilon			8	LOC_Os08g37210.	 Biochemical character	Os08g0477100 	LOC_Os08g37210.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19865	_	OspPLAIIzeta, pPLAIIzeta	_	Patatin-related phospholipase A II zeta			8	LOC_Os08g37250. Q6ZJD3.	 Biochemical character	Os08g0477500 	LOC_Os08g37250.1				GO:0016787 - hydrolase activity, GO:0006952 - defense response, GO:0016042 - lipid catabolic process		
19866	_	OspPLAIIeta, pPLAIIeta	_	Patatin-related phospholipase A II eta			9	LOC_Os09g28770.	 Biochemical character	Os09g0462400 	LOC_Os09g28770.1				GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process		
19867	_	OspPLAIItheta, pPLAIItheta	_	Patatin-related phospholipase A II theta			11	LOC_Os11g39990.	 Biochemical character	Os11g0614400 	LOC_Os11g39990.1				GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process		
19868	_	OspPLAIIiota, pPLAIIiota	_	Patatin-related phospholipase A II iota			11	LOC_Os11g40009.	 Biochemical character	Os11g0614500	LOC_Os11g40009.2, LOC_Os11g40009.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19869	_	OspPLAIIkappa, pPLAIIkappa	_	Patatin-related phospholipase A II kappa			12	LOC_Os12g36530.	 Biochemical character	Os12g0551600 	LOC_Os12g36530.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19870	_	OspPLAIIlambda, pPLAIIlambda	_	Patatin-related phospholipase A II lambda			12	LOC_Os12g36610.	 Biochemical character	Os12g0552200 	LOC_Os12g36610.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19871	_	OspPLAI, pPLAI	_	Patatin-related phospholipase A I			7	LOC_Os07g33670.	 Biochemical character	Os07g0520900 	LOC_Os07g33670.1				GO:0010228 - vegetative to reproductive phase transition, GO:0016042 - lipid catabolic process, GO:0047714 - galactolipase activity, GO:0004620 - phospholipase activity, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009695 - jasmonic acid biosynthetic process, GO:0016926 - protein desumoylation, GO:0009620 - response to fungus		
19872	_	OspPLAIIIalpha, pPLAIIIalpha	_	Patatin-related phospholipase A III alpha		OspplaIIIalpha-1	3	LOC_Os03g14950. GO:2000024: regulation of leaf development.  the essential genes responsible for creating the gamma-rl mutant (rolled-leaf mutant on chromosome 3) phenotypes.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits	Os03g0254400 	LOC_Os03g14950.1				GO:0080113 - regulation of seed growth, GO:0080112 - seed growth, GO:0048366 - leaf development, GO:0008112 - nicotinamide N-methyltransferase activity, GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity, GO:0009739 - response to gibberellin stimulus, GO:0030244 - cellulose biosynthetic process	TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000135 - leaf length, TO:0000166 - gibberellic acid sensitivity, TO:0000146 - seed length, TO:0000655 - leaf development trait, TO:0000653 - seed development trait, TO:0000227 - root length, TO:0000576 - stem length	PO:0007030 - seedling shoot emergence stage 
19873	_	OspPLAIIIbeta, pPLAIIIbeta	_	Patatin-related phospholipase A III beta			3	LOC_Os03g43880.	 Biochemical character	Os03g0640000 	LOC_Os03g43880.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19874	_	OspPLAIIIgamma, pPLAIIIgamma	_	Patatin-related phospholipase A III gamma			3	LOC_Os03g57080.	 Biochemical character	Os03g0784100 	LOC_Os03g57080.1				GO:0016787 - hydrolase activity		
19875	_	OspPLAIIIepsilon, pPLAIIIepsilon	_	Patatin-related phospholipase A III epsilon			7	LOC_Os07g05110. Q8H5D4.	 Biochemical character	Os07g0144500 	LOC_Os07g05110.1				GO:0016787 - hydrolase activity, GO:0006952 - defense response, GO:0016042 - lipid catabolic process		
19876	_	OspPLAIIIzeta, pPLAIIIzeta	_	Patatin-related phospholipase A III zeta			12	LOC_Os12g41720.	 Biochemical character	Os12g0611300	LOC_Os12g41720.1				GO:0008152 - metabolic process		
19877	_	OspPLAIValpha, pPLAIValpha	_	Patatin-related phospholipase A IV alpha			1	LOC_Os01g55650.	 Biochemical character	Os01g0762000 	LOC_Os01g55650.1				GO:0006629 - lipid metabolic process, GO:0004806 - triacylglycerol lipase activity		
19878	_	OspPLAIVbeta, pPLAIVbeta	_	Patatin-related phospholipase A IV beta			3	LOC_Os03g59620.	 Biochemical character	Os03g0810900 	LOC_Os03g59620.1				GO:0006629 - lipid metabolic process, GO:0004806 - triacylglycerol lipase activity		
19879	_	OspPLAV, pPLAV	_	Patatin-related phospholipase A V			11	LOC_Os11g34370.	 Biochemical character	Os11g0546300 	LOC_Os11g34370.1				GO:0006629 - lipid metabolic process, GO:0016787 - hydrolase activity		
19881	_	OsTOR, TOR	_	target of rapamycin			5	AB982929. Q0DJS1. GO:0000975: regulatory region DNA binding. GO:0071555: cytokinesis by cell plate formation. GO:2000234: positive regulation of rRNA processing. GO:1901367:  response to L-cysteine. GO:1901355: response to rapamycin.	 Tolerance and resistance - Stress tolerance	Os05g0235300					GO:0045010 - actin nucleation, GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0016301 - kinase activity, GO:0008144 - drug binding, GO:0005524 - ATP binding, GO:0031931 - TORC1 complex, GO:0080052 - response to histidine, GO:0010238 - response to proline, GO:0007131 - reciprocal meiotic recombination, GO:0007062 - sister chromatid cohesion, GO:0004674 - protein serine/threonine kinase activity, GO:0043201 - response to leucine, GO:0009737 - response to abscisic acid stimulus, GO:0043200 - response to amino acid stimulus, GO:0048765 - root hair cell differentiation, GO:0007155 - cell adhesion, GO:0009303 - rRNA transcription, GO:0009407 - toxin catabolic process, GO:0009880 - embryonic pattern specification, GO:0009887 - organ morphogenesis, GO:0010072 - primary shoot apical meristem specification, GO:0010090 - trichome morphogenesis, GO:0010228 - vegetative to reproductive phase transition, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0045595 - regulation of cell differentiation, GO:0045132 - meiotic chromosome segregation, GO:0010431 - seed maturation, GO:0010507 - negative regulation of autophagy, GO:0016303 - 1-phosphatidylinositol-3-kinase activity, GO:0030307 - positive regulation of cell growth, GO:0033044 - regulation of chromosome organization, GO:0040019 - positive regulation of embryonic development, GO:0042138 - meiotic DNA double-strand break formation	TO:0000615 - abscisic acid sensitivity	
19882	_		_	OsRaptor 1, Raptor 1, Regulatory associated protein of TOR 1			11	LOC_Os11g01872. C7J8E5. GO:0071230: cellular response to amino acid stimulus.		Os11g0109933 	LOC_Os11g01872.1				GO:0071902 - positive regulation of protein serine/threonine kinase activity, GO:0030674 - protein binding, bridging, GO:0031931 - TORC1 complex, GO:0005737 - cytoplasm, GO:0008361 - regulation of cell size, GO:0009267 - cellular response to starvation, GO:0010506 - regulation of autophagy, GO:0030307 - positive regulation of cell growth, GO:0031929 - TOR signaling pathway		
19883	_		_	OsRaptor 2, Raptor 2, Regulatory associated protein of TOR 2			12	LOC_Os12g01922. Q0IQN5. GO:0071230: cellular response to amino acid stimulus.		Os12g0110000/Os12g0110050					GO:0031931 - TORC1 complex, GO:0030674 - protein binding, bridging, GO:0031929 - TOR signaling pathway, GO:0009267 - cellular response to starvation, GO:0030307 - positive regulation of cell growth, GO:0008361 - regulation of cell size, GO:0005737 - cytoplasm, GO:0071902 - positive regulation of protein serine/threonine kinase activity, GO:0010506 - regulation of autophagy		
19884	_	CaMBP	_	Calmodulin-Binding Protein			12	LOC_Os12g36110.		Os12g0547600	LOC_Os12g36110.1				GO:0006950 - response to stress		
19885	_	OsCYL1, CYL1	_	cyclase-like 1			2	LOC_Os02g09420. AK287460.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0187100 	LOC_Os02g09420.1				GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0019441 - tryptophan catabolic process to kynurenine, GO:0004061 - arylformamidase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009735 - response to cytokinin stimulus	TO:0000276 - drought tolerance, TO:0000173 - ethylene sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity	
19886	_	OsCYL2, CYL2	_	cyclase-like 2			6	LOC_Os06g43180.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0638700 	LOC_Os06g43180.1				GO:0009737 - response to abscisic acid stimulus, GO:0019441 - tryptophan catabolic process to kynurenine, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004061 - arylformamidase activity, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity	
19887	_	OsCYL3, CYL3	_	cyclase-like 3			8	LOC_Os08g23100.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0319900 	LOC_Os08g23100.2, LOC_Os08g23100.1				GO:0019441 - tryptophan catabolic process to kynurenine, GO:0009737 - response to abscisic acid stimulus, GO:0004061 - arylformamidase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
19888	_	OsCYL4, CYL4, OsCYL4a, OsCYL4b	_	cyclase-like 4			9	LOC_Os09g02270.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0110300 	LOC_Os09g02270.2, LOC_Os09g02270.1				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004061 - arylformamidase activity, GO:0009409 - response to cold, GO:0009733 - response to auxin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0019441 - tryptophan catabolic process to kynurenine	TO:0002677 - brassinosteroid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity	
19889	_		_	AQUARIUS, intron-binding protein AQUARIUS			3			Os03g0387000	LOC_Os03g26960.1				GO:0005681 - spliceosomal complex, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005886 - plasma membrane, GO:0009507 - chloroplast		
19890	_	PAB2, OsPAB2	_	OsTT1-like, TT1 paralog PAB2, 20S proteasome alpha2 subunit			2		 Biochemical character	Os02g0634900	LOC_Os02g42320.4, LOC_Os02g42320.3, LOC_Os02g42320.2, LOC_Os02g42320.1				GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0006511 - ubiquitin-dependent protein catabolic process		
19891	_	OsWS1, WS1	_	wax synthase isoform 1			4	LOC_Os04g40590. a member of the membrane-bound O-acyl transferase gene family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0481900 	LOC_Os04g40590.1				GO:0009414 - response to water deprivation, GO:0005783 - endoplasmic reticulum, GO:0010025 - wax biosynthetic process, GO:0047196 - long-chain-alcohol O-fatty-acyltransferase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
19892	_	OsMYB91, MYB91, OsRS2, RS2	_	ROUGH SHEATH2, ROUGH SHEATH 2			12	an R2R3-type MYB gene. LOC_Os12g38400. Q94IB1. a  rice ortholog of maize RS2. AB064519, AB071600.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0572000	LOC_Os12g38400.2	GR:0061110			GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0010338 - leaf formation, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0000302 - response to reactive oxygen species	TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity	PO:0004725 - abaxial side of leaf primordium 
19893	_	OsI-BAK1, I-BAK1	_				3	a rice OsBAK1 homologue. KJ669690. CT830112. LOC_Os03g32580.	 Vegetative organ - Leaf,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os03g0440900	LOC_Os03g32580.1				GO:0048366 - leaf development, GO:0010431 - seed maturation, GO:0016301 - kinase activity, GO:0009742 - brassinosteroid mediated signaling, GO:0009960 - endosperm development, GO:0009790 - embryonic development	TO:0002677 - brassinosteroid sensitivity, TO:0002661 - seed maturation, TO:0000655 - leaf development trait, TO:0000028 - unfilled grain number, TO:0000189 - embryoless, TO:0000064 - embryo related trait	PO:0007633 - endosperm development stage , PO:0007631 - plant embryo stage , PO:0007632 - seed maturation stage , PO:0001050 - leaf development stage 
19894	_	FUWA, OsFUWA	_			fuwa	2	an NHL domain-containing protein. LOC_Os02g13950. KF736096, KF736095. TO:0000847: panicle anatomy and morphology trait.	 Seed - Morphological traits,  Seed - Morphological traits - Grain shape	Os02g0234200 	LOC_Os02g13950.1				GO:0009616 - virus induced gene silencing, GO:0009086 - methionine biosynthetic process, GO:0010050 - vegetative phase change, GO:0048367 - shoot development, GO:0051726 - regulation of cell cycle, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation	TO:0000621 - inflorescence development trait, TO:0000654 - shoot development trait, TO:0002730 - grain shape, TO:0000590 - grain weight	PO:0007089 - stem elongation stage , PO:0006085 - root meristem , PO:0006342 - infructescence , PO:0001083 - inflorescence development stage , PO:0020148 - shoot apical meristem 
19895	_	NRT1.1B, OsNRT1.1B, OsNPF6.5, NPF6.5	_	nitrate transporter 1.1B		NRT1.1B-indica, NRT1.1B-Nipponbare, osnrt1.1b	10	LOC_Os10g40600. GO:1902025: nitrate import. GO:0090408: phloem nitrate loading. TO:0020100: nitrate uptake. a homolog of AtNRT1.1.	 Biochemical character,  Character as QTL - Yield and productivity	Os10g0554200 	LOC_Os10g40600.1				GO:0016020 - membrane, GO:0005215 - transporter activity	TO:0000396 - grain yield	
19896	_	OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3, NPF6.3	_	nitrate transporter 1.1A		osnrt1.1a	8	LOC_Os08g05910.	 Biochemical character,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os08g0155400	LOC_Os08g05910.2, LOC_Os08g05910.1				GO:0006857 - oligopeptide transport, GO:2000028 - regulation of photoperiodism, flowering, GO:0006808 - regulation of nitrogen utilization, GO:0005215 - transporter activity, GO:0016021 - integral to membrane, GO:0060359 - response to ammonium ion	TO:0000396 - grain yield	
19897	_	OsNRT1.1C	_	nitrate transporter 1.1C			3	LOC_Os03g01290.	 Biochemical character	Os03g0103000	LOC_Os03g01290.1				GO:0016020 - membrane, GO:0005215 - transporter activity		
19898	_	OsNRT1.2	_	nitrate transporter 1.2			6	LOC_Os06g38294.	 Biochemical character	Os06g0581000 	LOC_Os06g38294.1				GO:0005215 - transporter activity, GO:0016020 - membrane		
19899	_	OsNRT1.3A	_	nitrate transporter 1.3A			2	LOC_Os02g37040 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character	Os02g0580900					GO:0005215 - transporter activity, GO:0016020 - membrane		
19900	_	OsNRT1.3B	_	nitrate transporter 1.3B			4	LOC_Os04g39030.	 Biochemical character	Os04g0464400 	LOC_Os04g39030.1				GO:0006857 - oligopeptide transport, GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
19901	_	OsNRT1.4	_	nitrate transporter 1.4			1	LOC_Os01g37590.	 Biochemical character	Os01g0556700	LOC_Os01g37590.2, LOC_Os01g37590.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0006857 - oligopeptide transport		
19902	_	OsNRT1.5A	_	nitrate transporter 1.5A			2	LOC_Os02g46460.	 Biochemical character	Os02g0689900 	LOC_Os02g46460.2, LOC_Os02g46460.1				GO:0010106 - cellular response to iron ion starvation, GO:0015112 - nitrate transmembrane transporter activity, GO:0009734 - auxin mediated signaling pathway, GO:0042398 - cellular amino acid derivative biosynthetic process, GO:0006826 - iron ion transport, GO:0009698 - phenylpropanoid metabolic process, GO:0006598 - polyamine catabolic process, GO:0016020 - membrane		
19903	_	OsNRT1.5B	_	nitrate transporter 1.5B			2	LOC_Os02g48570.	 Biochemical character	Os02g0716800	LOC_Os02g48570.2, LOC_Os02g48570.1				GO:0005215 - transporter activity, GO:0016020 - membrane		
19904	_	OsNRT1.7	_	nitrate transporter 1.7			1	LOC_Os01g68510.	 Biochemical character	Os01g0913300 	LOC_Os01g68510.1				GO:0005215 - transporter activity, GO:0016020 - membrane		
19905	_	OsNRT3.2	_	nitrate transporter 3.2			7	LOC_Os07g48840. Q8H5F8.	 Biochemical character	Os07g0688000 	LOC_Os07g48840.3, LOC_Os07g48840.2, LOC_Os07g48840.1				GO:0047734 - CDP-glycerol diphosphatase activity, GO:0046872 - metal ion binding, GO:0047631 - ADP-ribose diphosphatase activity		
19906	_	OsMYB52, OsMYB52/54	_	myb transcription factor 52, transcription factor MYB52			3	LOC_Os03g51110. OsMYB52/54 in Ye et al. 2015.	 Other	Os03g0720800	LOC_Os03g51110.1				GO:0009834 - secondary cell wall biogenesis, GO:0003677 - DNA binding		
19907	_	OsMYB86	_	myb transcription factor 86, transcription factor MYB86			7	LOC_Os07g44090.	 Other	Os07g0634900 	LOC_Os07g44090.3, LOC_Os07g44090.2, LOC_Os07g44090.1				GO:0003677 - DNA binding		
19908	_	OsMYB86-L1	_				1	LOC_Os01g36460.	 Other	Os01g0545100  	LOC_Os01g36460.1				GO:0003677 - DNA binding		
19909	_	OsMYB86-L2	_				5	LOC_Os05g46610.	 Other	Os05g0543600 	LOC_Os05g46610.1				GO:0003677 - DNA binding		
19910	_	OSIPP3	_	pectin methylesterase inhibitor protein			6	LOC_Os05g46530.	 Biochemical character	Os05g0543000 	LOC_Os05g46530.1				GO:0030599 - pectinesterase activity, GO:0004857 - enzyme inhibitor activity		PO:0009066 - anther , PO:0025281 - pollen 
19911	PHR3	OsPHR3, Os-PHR3, OsPHL1, PHL1	PHOSPHATE STARVATION RESPONSE 3	Phosphate Starvation Response3, PHOSPHATE RESPONSE3		phr3, Osphr3, osphr3-1, osphr3-2, osphr3-3	7	TO:0020102: phosphate content. LOC_Os02g04640. a MYB coiled-coil (MYB-CC) domain-containing TF. GO:0080186: developmental vegetative growth.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0139000 	LOC_Os02g04640.1				GO:0009635 - response to herbicide, GO:0042594 - response to starvation, GO:0055081 - anion homeostasis, GO:0048527 - lateral root development, GO:0003677 - DNA binding, GO:0048830 - adventitious root development, GO:0048767 - root hair elongation, GO:0016036 - cellular response to phosphate starvation	TO:0000168 - abiotic stress trait, TO:0000058 - herbicide sensitivity, TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
19912	_	OsGME2, GME2	_	GDP-D-mannose epimerase 2		osgme2	11	Q2R1V8.	 Biochemical character,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os11g0591100	LOC_Os11g37890.3, LOC_Os11g37890.2, LOC_Os11g37890.1				GO:0047918 - GDP-mannose 3,5-epimerase activity, GO:0005829 - cytosol, GO:0051287 - NAD or NADH binding, GO:0019853 - L-ascorbic acid biosynthetic process	TO:0000436 - spikelet sterility, TO:0000371 - yield trait, TO:0000382 - 1000-seed weight, TO:0000448 - filled grain percentage	
19913	_	OsGGP, GGP	_	GDP-L-galactose phosphorylase		osggp	12	Q2R1V8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0190000	LOC_Os12g08810.1				GO:0006979 - response to oxidative stress, GO:0080048 - GDP-D-glucose phosphorylase activity, GO:0019853 - L-ascorbic acid biosynthetic process	TO:0000457 - total biomass yield, TO:0002657 - oxidative stress, TO:0000152 - panicle number, TO:0000014 - panicle weight, TO:0000430 - germination rate	
19914	_		_	a homologue of OsGGP			1		 Biochemical character	Os01g0901300	LOC_Os01g67520.3, LOC_Os01g67520.2, LOC_Os01g67520.1				GO:0080048 - GDP-D-glucose phosphorylase activity		
19915	_	GL7, GW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7	_	Grain Length on Chromosome 7, grain width QTL on chromosome 7, Slender grain on chromosome 7		GW7TFA, gw7HJX74, slg7, GL7-A, GL7-B	7	LOC_Os07g41200. a protein homologous to Arabidopsis thaliana LONGIFOLIA proteins (LONGIFOLIA 1 and LONGIFOLIA 2). a TON1 RECRUIT MOTIF (TRM)-containing protein. a TONNEAU1-recruiting motif protein. KP899557. TO:0000832: flag leaf morphology trait.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0603300	LOC_Os07g41200.1				GO:0048316 - seed development, GO:0005886 - plasma membrane, GO:0010229 - inflorescence development, GO:0009826 - unidimensional cell growth	TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000371 - yield trait, TO:0002757 - flag leaf length, TO:0000162 - seed quality, TO:0000397 - grain size, TO:0002730 - grain shape, TO:0002731 - grain length to width ratio, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
19916	_		_	a negative regulator of GL7			7	a protein homologous to Arabidopsis thaliana LONGIFOLIA proteins. a TON1 RECRUIT MOTIF (TRM)-containing protein. KP899557. LOC_Os07g41200.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0603400	LOC_Os07g41210.1				GO:0009826 - unidimensional cell growth	TO:0000397 - grain size, TO:0000734 - grain length	
19917	_	GL7-S1	_				7	We found two full-length cDNAs transcribed from Os07g0603300 in P13 (landrace Ping13), which we named GL7-S1 and GL7-S2. GL7-S1 and GL7-S2 encode exactly the same polypeptide and exhibited similar transcript levels. This tandem duplication of a 17.1-kb segment at the GL7 locus leads to upregulation of GL7 (Os07g0603300) and downregulation of its nearby negative regulator (Os07g0603400) (Wang et al. 2015).	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity						GO:0009826 - unidimensional cell growth	TO:0000397 - grain size, TO:0000734 - grain length	
19918	_	GL7-S2	_				7	We found two full-length cDNAs transcribed from Os07g0603300 in P13 (landrace Ping13), which we named GL7-S1 and GL7-S2. GL7-S1 and GL7-S2 encode exactly the same polypeptide and exhibited similar transcript levels. This tandem duplication of a 17.1-kb segment at the GL7 locus leads to upregulation of GL7 (Os07g0603300) and downregulation of its nearby negative regulator (Os07g0603400) (Wang et al. 2015).	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity						GO:0009826 - unidimensional cell growth	TO:0000397 - grain size, TO:0000734 - grain length	
19919	_	OsTON1b, TON1b	_	TONNEAU1b, TONNEAU 1b			11	LOC_Os11g01170. a rice homolog of Arabidopsis thaliana TON1.		Os11g0102600 	LOC_Os11g01170.1						
19920	_	OsTON2, TON2	_	TONNEAU2, TONNEAU 2			5	LOC_Os05g05710. a homolog of Arabidopsis PP2A (also known as FASS or TON2). GO:0071555: cell wall organization.		Os05g0149800	LOC_Os05g05710.1				GO:0000913 - preprophase band formation, GO:0005509 - calcium ion binding, GO:0005634 - nucleus, GO:0005819 - spindle, GO:0007155 - cell adhesion, GO:0009524 - phragmoplast, GO:0009826 - unidimensional cell growth, GO:0010090 - trichome morphogenesis, GO:0000226 - microtubule cytoskeleton organization, GO:0048765 - root hair cell differentiation, GO:0045010 - actin nucleation, GO:0030865 - cortical cytoskeleton organization, GO:0030359 - protein phosphatase type 2B regulator activity		
19921	EDA16	BRHIS1, OsEDA16	EMBRYO SAC DEVELOPMENT ARREST 16	BIT-responsive Histone-interacting SNF2 ATPase 1, embryo sac development arrest 16			8	LOC_Os08g08220. a rice SWI/SNF2 ATPase gene. a putative RING finger SNF2 ATPase.		Os08g0180300	LOC_Os08g08220.3, LOC_Os08g08220.2, LOC_Os08g08220.1				GO:0008270 - zinc ion binding, GO:0031348 - negative regulation of defense response, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding	TO:0000074 - blast disease	
19922	_	OsTINP1	_	TGF-b-inducible nuclear protein 1			7	a rice homolog of human TGF-b-inducible nuclear protein 1 and yeast NSA2.		Os07g0673100	LOC_Os07g47580.3, LOC_Os07g47580.2, LOC_Os07g47580.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0051604 - protein maturation		
19923	_	H2B.7	_	histone H2B.7			1	Q7GBK0.		Os01g0152900	LOC_Os01g05970.1				GO:0006334 - nucleosome assembly, GO:0000788 - nuclear nucleosome, GO:0003677 - DNA binding		
19924	_	H2A.Xa	_	histone H2A.Xa													
19925	_	H2A.Xb	_	histone H2A.Xb													
19926	_	H2A.3	_	histone H2A.3													
19927	_	OsILR1, ILR1	_	IAA-LEUCINE RESISTANT1, IAA-LEUCINE RESISTANT 1			7	Q8H3C9.	 Biochemical character	Os07g0249700	LOC_Os07g14590.1				GO:0016787 - hydrolase activity		
19929	_	OsORAP1, ORAP1, OzT9, AO, OsAAO4, AAO4	_	OZONE-RESPONSIVE APOPLASTIC PROTEIN1, OZONE-RESPONSIVE APOPLASTIC PROTEIN 1, ASCORBATE OXIDASE, ascorbate oxidase 4			9	OzT9 is a quantitative trait locus for ozone stress tolerance. GO:0072593  reactive oxygen species metabolic process. LOC_Os09g20090.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0365900	LOC_Os09g20090.1				GO:0009414 - response to water deprivation, GO:0048046 - apoplast, GO:0010193 - response to ozone, GO:0050832 - defense response to fungus, GO:0005507 - copper ion binding, GO:0009751 - response to salicylic acid stimulus, GO:0043068 - positive regulation of programmed cell death, GO:0016491 - oxidoreductase activity, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000276 - drought tolerance, TO:0000074 - blast disease	PO:0009005 - root , PO:0009006 - shoot system 
19930	AAO1	OsAAO1	ASCORBATE OXIDASE 1	AO-like, AO homolog, ASCORBATE OXIDASE homolog, ascorbate oxidase 1	ASCORBATE OXIDASE 1		6	LOC_Os06g37080.	 Tolerance and resistance - Stress tolerance	Os06g0567200	LOC_Os06g37080.1				GO:0009651 - response to salt stress, GO:0005507 - copper ion binding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0009005 - root 
19931	AAO2	OsAAO2, L-APX	ASCORBATE OXIDASE 2	AO-like, AO homolog, ASCORBATE OXIDASE homolog, ascorbate oxidase 2	ASCORBATE OXIDASE 2		6	LOC_Os06g37150. targeted by osa-miR528-5p (Qin et al. 2017).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0567900	LOC_Os06g37150.1				GO:0009414 - response to water deprivation, GO:0005507 - copper ion binding, GO:0016491 - oxidoreductase activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system 
19932	AAO5	OsAAO5	ASCORBATE OXIDASE 5	AO-like, AO homolog, ASCORBATE OXIDASE homolog, ascorbate oxidase 5, Os-l-ascorbate oxidase, l-ascorbate oxidase	ASCORBATE OXIDASE 5		9	LOC_Os09g32952.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0507300	LOC_Os09g32952.1				GO:0005576 - extracellular region, GO:0005507 - copper ion binding, GO:0016491 - oxidoreductase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
19933	_	OsCMT2	_	chromomethylase 2		oscmt2-2	5	LOC_Os05g13780. AB360585.	 Biochemical character	Os05g0224800/Os05g0224900					GO:0008168 - methyltransferase activity, GO:0003677 - DNA binding, GO:0006306 - DNA methylation		
19934	TOS19	Tos19, Lullaby	RETROTRANSPOSON 19	Retrotransposon19, Retrotransposon 19, Retrotransposon-19, retrotransposon Tos19, retrotransposon Lullaby				a tissue culture-activated copia retrotransposons. D85878. The Nipponbare genome harbours two native copies of Lullaby on chromosomes 6 and 9. 	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19935	_	LINE1-6_OS	_	RETROTRANSPOSON LINE1-6_OS, non-LTR retrotransposable element LINE1-6_OS				a LINE element.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19936	DASHENG	Dasheng	RETROTRANSPOSON DASHENG	Dasheng retrotransposon, retrotransposon Dasheng, Dasheng element				a pericentromeric clustered high-copy-number non-autonomous gypsy retrotransposon. a Nonautonomous Long Terminal Repeat Element.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19937	TOS6	Tos6	RETROTRANSPOSON 6	Retrotransposon6, Retrotransposon 6, Retrotransposon-6, retrotransposon Tos6				D85865.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19938	TOS7	Tos7	RETROTRANSPOSON 7	Retrotransposon7, Retrotransposon 7, Retrotransposon-7, retrotransposon Tos7				D85871.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19939	TOS8	Tos8	RETROTRANSPOSON 8	Retrotransposon8, Retrotransposon 8, Retrotransposon-8, retrotransposon Tos8				D85866.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19940	TOS9	Tos9	RETROTRANSPOSON 9	Retrotransposon9, Retrotransposon 9, Retrotransposon-9, retrotransposon Tos9				D85867.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19941	TOS10	Tos10	RETROTRANSPOSON 10	Retrotransposon10, Retrotransposon 10, Retrotransposon-10, retrotransposon Tos10				D85868.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19942	TOS11	Tos11	RETROTRANSPOSON 11	Retrotransposon11, Retrotransposon 11, Retrotransposon-11, retrotransposon Tos11				D85869.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19943	TOS12	Tos12	RETROTRANSPOSON 12	Retrotransposon12, Retrotransposon 12, Retrotransposon-12, retrotransposon Tos12				D85870.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19944	TOS13	Tos13	RETROTRANSPOSON 13	Retrotransposon13, Retrotransposon 13, Retrotransposon-13, retrotransposon Tos13				D85872.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19945	TOS14	Tos14	RETROTRANSPOSON 14	Retrotransposon14, Retrotransposon 14, Retrotransposon-14, retrotransposon Tos14				D85873.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19946	TOS15	Tos15	RETROTRANSPOSON 15	Retrotransposon15, Retrotransposon 15, Retrotransposon-15, retrotransposon Tos15				D85874.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19947	TOS16	Tos16	RETROTRANSPOSON 16	Retrotransposon16, Retrotransposon 16, Retrotransposon-16, retrotransposon Tos16				D85875.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19948	TOS18	Tos18	RETROTRANSPOSON 18	Retrotransposon18, Retrotransposon 18, Retrotransposon-18, retrotransposon Tos18				D85877.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19949	TOS20	Tos20	RETROTRANSPOSON 20	Retrotransposon20, Retrotransposon 20, Retrotransposon-20, retrotransposon Tos20				D85879.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19950	TOS4	Tos4	_	transposon of O. sativa 4, retrotransposon Tos4				a copia-like element.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19951	TOS5	Tos5	_	transposon of O. sativa 5, retrotransposon Tos5				a copia-like element.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19952	_	OsSCAR2, SCAR2, OsSCAR3, SCAR3	_	Suppressor of cAMP Receptor-Like Protein 2, SCAR-like Protein 2, suppressor of cAMP receptor 3			3	LOC_Os03g18710. SCAR3 in Zhang et al. 2008. OsSCAR2 in Bai et al. 2015.		Os03g0298700 	LOC_Os03g18710.1				GO:0005856 - cytoskeleton, GO:0030036 - actin cytoskeleton organization		
19953	_	OsSCAR3, SCAR3, OsSCAR2, SCAR2	_	Suppressor of cAMP Receptor-Like Protein 3, SCAR-like Protein 3, suppressor of cAMP receptor 2			3	Q84TX2. LOC_Os03g60240. SCAR2 in Zhang et al. 2008. OsSCAR3 in Bai et al. 2015.		Os03g0816900/Os03g0817000 					GO:0005856 - cytoskeleton, GO:0005737 - cytoplasm, GO:0030036 - actin cytoskeleton organization		
19954	_	OsSCAR4, SCAR4	_	Suppressor of cAMP Receptor-Like Protein 4, SCAR-like Protein 4, suppressor of cAMP receptor 4			7	LOC_Os07g49140.		Os07g0691700	LOC_Os07g49140.1				GO:0030036 - actin cytoskeleton organization, GO:0005856 - cytoskeleton		
19955	_	OsFd3, Fd3	_	ferredoxin 3			3	LOC_Os03g61960.	 Biochemical character	Os03g0835900 	LOC_Os03g61960.2, LOC_Os03g61960.1				GO:0009055 - electron carrier activity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0022900 - electron transport chain		
19956	_	OsFdC1, FdC1	_	ferredoxin-like protein with C-terminal extension 1			3	LOC_Os03g45710. OsFdC1 is the ortholog of AtFdC1.	 Biochemical character	Os03g0659200	LOC_Os03g45710.1				GO:0009507 - chloroplast, GO:0006364 - rRNA processing, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0015995 - chlorophyll biosynthetic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0006098 - pentose-phosphate shunt, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0022900 - electron transport chain, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding		
19957	HDY1	OsFdC2, FdC2, OsHDY1	HEADING DATE DELAY AND YELLOWISH LEAF 1	ferredoxin-like protein with C-terminal extension 2, Ferredoxin C2	FERREDOXIN C2	hdy1	3	LOC_Os03g48040. OsFdC2 is the ortholog of AtFdC2. 	 Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - Heading date,  Coloration - Chlorophyll	Os03g0685000 	LOC_Os03g48040.2, LOC_Os03g48040.1				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0022900 - electron transport chain, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0006098 - pentose-phosphate shunt, GO:0009055 - electron carrier activity, GO:0009507 - chloroplast, GO:0009688 - abscisic acid biosynthetic process, GO:0010103 - stomatal complex morphogenesis, GO:0048573 - photoperiodism, flowering, GO:0046872 - metal ion binding	TO:0000326 - leaf color, TO:0000137 - days to heading, TO:0001015 - photosynthetic rate, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content	PO:0025034 - leaf 
19958	_	OsPR5, PR5	_	pathogenesis-related gene 5, Pathogenesis-related protein class 5 gene, PATHOGENESIS-RELATED PROTEIN 5			3	U77657.	 Tolerance and resistance - Disease resistance	Os03g0661600	LOC_Os03g45960.1						
19959	LSI3	Lsi3, OsLsi3, Lsi3/SIET2, SIET2	LOW SILICON RICE 3	low silicon 3, silicon efflux transporter 2, Si efflux transporter 2	SILICON EFFLUX TRANSPORTER 2		10	a Si efflux transporter (SIET/Lsi2-like) homolog.	 Vegetative organ - Root	Os10g0547500	LOC_Os10g39980.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0032523 - silicon efflux transmembrane transporter activity		
19960	_	SIET3	_	silicon efflux transporter 3, Si efflux transporter 3			2	a Si efflux transporter (SIET/Lsi2-like) homolog.	 Biochemical character	Os02g0822100	LOC_Os02g57620.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
19961	_	SIET4	_	silicon efflux transporter 4, Si efflux transporter 4			3	a Si efflux transporter (SIET/Lsi2-like) homolog.	 Biochemical character	Os03g0147400	LOC_Os03g05390.9, LOC_Os03g05390.8, LOC_Os03g05390.7, LOC_Os03g05390.6, LOC_Os03g05390.5, LOC_Os03g05390.4, LOC_Os03g05390.3, LOC_Os03g05390.2, LOC_Os03g05390.13, LOC_Os03g05390.12, LOC_Os03g05390.11, LOC_Os03g05390.10, LOC_Os03g05390.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
19962	_	SIET5	_	silicon efflux transporter 5, Si efflux transporter 5			10	a Si efflux transporter (SIET/Lsi2-like) homolog.	 Biochemical character	Os10g0447900	LOC_Os10g31040.6, LOC_Os10g31040.5, LOC_Os10g31040.4, LOC_Os10g31040.3, LOC_Os10g31040.2, LOC_Os10g31040.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
19963	_	HMGB	_	High mobility group protein B, High mobility group subgroup B protein			8	an HMGbox DNA-binding protein. LOC_Os08g01100.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0101100	LOC_Os08g01100.1				GO:0003700 - transcription factor activity, GO:0006261 - DNA-dependent DNA replication, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19964	_	OsNAC2	_						 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19965	_	OsMYB46	_						 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19966	_	OsF-BOX28	_						 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19967	_	GSA, GSAT, HEML	_	"\"Glutamate-1-semialdehyde 2, 1-aminomutase\", Glutamate-1-semialdehyde aminotransferase"			8	LOC_Os08g41990. Q6YZE2. Os08g41990 might play vital roles in salt stress tolerance (Nounjan et al. 2018).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0532200 	LOC_Os08g41990.1				GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity, GO:0009507 - chloroplast, GO:0030170 - pyridoxal phosphate binding, GO:0015995 - chlorophyll biosynthetic process, GO:0008483 - transaminase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
19968	_	ALAD, HEMB	_	5-aminolevulinate dehydrogenase, ALA dehydratase, porphobilinogen synthase			6	Q5Z8V9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0704600 	LOC_Os06g49110.3, LOC_Os06g49110.2, LOC_Os06g49110.1				GO:0046872 - metal ion binding, GO:0004655 - porphobilinogen synthase activity, GO:0046686 - response to cadmium ion, GO:0015995 - chlorophyll biosynthetic process, GO:0009507 - chloroplast, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0009637 - response to blue light, GO:0010114 - response to red light	TO:0000158 - red light sensitivity, TO:0000159 - blue light sensitivity	
19969	_	PBD, PBGD, HEMC	_	Porphobilinogen deaminase			2	Q6H6D2.	 Biochemical character	Os02g0168800 	LOC_Os02g07230.3, LOC_Os02g07230.2, LOC_Os02g07230.1				GO:0019344 - cysteine biosynthetic process, GO:0018160 - peptidyl-pyrromethane cofactor linkage, GO:0006098 - pentose-phosphate shunt, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process, GO:0004418 - hydroxymethylbilane synthase activity, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0030154 - cell differentiation, GO:0009814 - defense response, incompatible interaction, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009965 - leaf morphogenesis, GO:0006364 - rRNA processing, GO:0009409 - response to cold, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0019684 - photosynthesis, light reaction, GO:0006744 - ubiquinone biosynthetic process, GO:0009697 - salicylic acid biosynthetic process		
19970	_	UroS	_	Uroporphyrinogen-III synthase			3	Q10QR9.	 Biochemical character	Os03g0186100 	LOC_Os03g08730.1				GO:0009507 - chloroplast, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0006780 - uroporphyrinogen III biosynthetic process, GO:0015995 - chlorophyll biosynthetic process, GO:0004852 - uroporphyrinogen-III synthase activity		
19971	LM3	UroD, URO-D	LESION MIMIC 3	Uroporphyrinogen-III decarboxylase, lesion mimic 3		lm3	3	LOC Os03g21900. Q10LR9.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Tolerance and resistance - Lesion mimic	Os03g0337600  	LOC_Os03g21900.1				GO:0015995 - chlorophyll biosynthetic process, GO:0004853 - uroporphyrinogen decarboxylase activity, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0048573 - photoperiodism, flowering, GO:0009507 - chloroplast	TO:0000063 - mimic response, TO:0000207 - plant height, TO:0000137 - days to heading	
19972	RLIN1	CPO, CPOX, LLM1, HEMF	RICE LESION INITIATION 1	Coproporphyrinogen oxidase, coproporphyrinogen III oxidase, leaf lesion mimic mutant 1		llm1, rlin1	4	Q7XPL2. LOC_Os04g52130. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Stress tolerance	Os04g0610800 	LOC_Os04g52130.1				GO:0015995 - chlorophyll biosynthetic process, GO:0042803 - protein homodimerization activity, GO:0004109 - coproporphyrinogen oxidase activity, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0009416 - response to light stimulus, GO:0012501 - programmed cell death, GO:0033014 - tetrapyrrole biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009507 - chloroplast	TO:0000075 - light sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000063 - mimic response	
19973	_	PPX, PPO1	_	Proporphyrinogen oxidase, protoporphyrinogen oxidase 1			1	Q9AR38.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0286600 	LOC_Os01g18320.1				GO:0015995 - chlorophyll biosynthetic process, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity, GO:0010114 - response to red light, GO:0009507 - chloroplast	TO:0000158 - red light sensitivity	
19974	_	FC1, OsGUN6-1, GUN6-1	_	Ferrochelatase 1, Genome uncoupled 6-1			9	Q69TB1.	 Biochemical character	Os09g0297000 	LOC_Os09g12560.2, LOC_Os09g12560.1				GO:0043069 - negative regulation of programmed cell death, GO:0009611 - response to wounding, GO:0010363 - regulation of plant-type hypersensitive response, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0052542 - callose deposition during defense response, GO:0009507 - chloroplast, GO:0006783 - heme biosynthetic process, GO:0004325 - ferrochelatase activity, GO:0006612 - protein targeting to membrane		
19975	_	FC2, OsGUN6-2, GUN6-2	_	Ferrochelatase 2, Genome uncoupled 6-2			5	Q0DIV0.	 Biochemical character	Os05g0361200 	LOC_Os05g29760.5, LOC_Os05g29760.4, LOC_Os05g29760.3, LOC_Os05g29760.2, LOC_Os05g29760.1				GO:0004325 - ferrochelatase activity, GO:0009507 - chloroplast, GO:0006783 - heme biosynthetic process		
19977	_		_				1	LOC_Os01g48690. a predicted lethal-phenotype gene in Lloyd et al. 2015.		Os01g0678600	LOC_Os01g48690.2, LOC_Os01g48690.1				GO:0016020 - membrane, GO:0015995 - chlorophyll biosynthetic process, GO:0003735 - structural constituent of ribosome, GO:0006364 - rRNA processing, GO:0009941 - chloroplast envelope, GO:0006412 - translation, GO:0009570 - chloroplast stroma, GO:0003723 - RNA binding, GO:0005840 - ribosome		
19978	_		_				2	LOC_Os02g46450. a predicted lethal-phenotype gene in Lloyd et al. 2015. GO:0071555: cell wall organization.		Os02g0689800 	LOC_Os02g46450.2, LOC_Os02g46450.1				GO:0006338 - chromatin remodeling, GO:0003677 - DNA binding, GO:0045010 - actin nucleation, GO:0007155 - cell adhesion, GO:0042742 - defense response to bacterium, GO:0009793 - embryonic development ending in seed dormancy, GO:0000278 - mitotic cell cycle, GO:0009910 - negative regulation of flower development, GO:0048451 - petal formation, GO:0003002 - regionalization, GO:0048765 - root hair cell differentiation, GO:0048453 - sepal formation, GO:0010090 - trichome morphogenesis, GO:0010228 - vegetative to reproductive phase transition, GO:0005618 - cell wall, GO:0016514 - SWI/SNF complex		
19979	_		_				3	LOC_Os03g46640. a predicted lethal-phenotype gene in Lloyd et al. 2015. Q10FF9.	 Biochemical character	Os03g0669100 	LOC_Os03g46640.1				GO:0000287 - magnesium ion binding, GO:0006226 - dUMP biosynthetic process, GO:0046081 - dUTP catabolic process, GO:0005737 - cytoplasm, GO:0004170 - dUTP diphosphatase activity		
19981	_	OsSIDP366, SIDP366	_	Stress induced DUF1644 protein 366			6	LOC_Os06g47860. GO:1901002: positive regulation of response to salt stress. GO:2000070: regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance	Os06g0693700 	LOC_Os06g47860.2, LOC_Os06g47860.1				GO:0044464 - cell part, GO:0046872 - metal ion binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010494 - stress granule, GO:0000932 - cytoplasmic mRNA processing body, GO:0005737 - cytoplasm	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
19982	_	OsDCP2, DCP2	_				2	a homolog of AtDCP2. LOC_Os02g56210.  PBs  (processing bodies) marker.	 Biochemical character	Os02g0805900 	LOC_Os02g56210.1				GO:0030145 - manganese ion binding, GO:0016787 - hydrolase activity, GO:0003723 - RNA binding		
19983	_	OsPABPC3, PABPC3	_				4	a homolog of AtPABP8. LOC_Os04g42600. SGs  (stress granules) marker.		Os04g0504800 	LOC_Os04g42600.2, LOC_Os04g42600.1				GO:0005737 - cytoplasm, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding		
19984	_		_	DUF1644 family protein			2	LOC_Os02g53110.		Os02g0770600 	LOC_Os02g53110.2, LOC_Os02g53110.1						
19985	_		_	DUF1644 family protein			2	LOC_Os02g35840.		Os02g0566500 	LOC_Os02g35840.1						
19986	_		_	DUF1644 family protein			4	LOC_Os04g37530.		Os04g0448100 	LOC_Os04g37530.1						
19987	_		_	DUF1644 family protein			9	LOC_Os09g27860.		Os09g0451800 	LOC_Os09g27860.1						
19988	_		_	DUF1644 family protein			2	LOC_Os02g05710.		Os02g0150900	LOC_Os02g05710.1				GO:0046872 - metal ion binding		
19989	_		_	DUF1644 family protein			7	LOC_Os07g23790.		Os07g0419800 	LOC_Os07g23790.8, LOC_Os07g23790.7, LOC_Os07g23790.6, LOC_Os07g23790.5, LOC_Os07g23790.4, LOC_Os07g23790.3, LOC_Os07g23790.2, LOC_Os07g23790.1				GO:0000956 - nuclear-transcribed mRNA catabolic process		
19990	_		_	DUF1644 family protein			4	LOC_Os04g04010.		Os04g0129400  	LOC_Os04g04010.1						
19991	_		_	DUF1644 family protein			1	LOC_Os01g42700.		Os01g0612600  	LOC_Os01g42700.5, LOC_Os01g42700.4, LOC_Os01g42700.3, LOC_Os01g42700.2, LOC_Os01g42700.1						
19992	_	OsARID6, ARID6	_	AT-rich Interaction Domain-containing protein 6			9	LOC_Os09g37250. ARID protein, HMG subfamily.		Os09g0544500	LOC_Os09g37250.1				GO:0016740 - transferase activity, GO:0003677 - DNA binding		
19993	_	OsARID3, ARID3, SIP5	_	AT-rich Interaction Domain-containing protein 3, SKIP interacting protein 5, SKIPa-interacting protein 5, SKIPa-interacting protein 5		Osarid3	6	LOC_Os06g41730. ARID protein, Hsp20 subfamily. GO:1902182: shoot apical meristem development. EU368695.	 Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Stress tolerance	Os06g0622300 	LOC_Os06g41730.2, LOC_Os06g41730.1				GO:0009691 - cytokinin biosynthetic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0010600 - regulation of auxin biosynthetic process, GO:0010252 - auxin homeostasis, GO:0010073 - meristem maintenance	TO:0000276 - drought tolerance, TO:0002638 - shoot meristem development, TO:0006020 - shoot apical meristem development, TO:0002672 - auxin content, TO:0002660 - cytokinin content	PO:0020148 - shoot apical meristem 
19994	_	OsARID4, ARID4	_	AT-rich Interaction Domain-containing protein 4			8	LOC_Os08g35000. ARID protein, PHD subfamily.		Os08g0451400	LOC_Os08g35000.5, LOC_Os08g35000.4, LOC_Os08g35000.3, LOC_Os08g35000.2, LOC_Os08g35000.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
19995	_	OsARID5, ARID5	_	AT-rich Interaction Domain-containing protein 5			9	LOC_Os09g26390. ARID protein, PHD subfamily.		Os09g0434000/Os09g0434100 					GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
19996	REM4.1	OsREM4.1	REMORIN 4.1	remorin, Remorin 4.1, remorin group 4 member 1	REMORIN 4.1		7	LOC_Os07g38170. OsREM4.1 in Raffaele et al. 2007 and Gui et al. 2014. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance	Os07g0569100	LOC_Os07g38170.1				GO:0009409 - response to cold, GO:0009742 - brassinosteroid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
19997	_		_				3	LOC_Os03g63870.	 Tolerance and resistance - Stress tolerance	Os03g0855700	LOC_Os03g63870.3, LOC_Os03g63870.2, LOC_Os03g63870.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19998	_		_				11	LOC_Os11g34790.	 Tolerance and resistance - Stress tolerance	Os11g0549665 	LOC_Os11g34790.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19999	_		_				10	LOC_Os10g22630.	 Tolerance and resistance - Stress tolerance		LOC_Os10g22630				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20000	_		_				2	LOC_Os02g57924.	 Tolerance and resistance - Stress tolerance	Os02g0825650 	LOC_Os02g57924.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20001	_		_				3	LOC_Os03g18779.	 Tolerance and resistance - Stress tolerance	Os03g0299700 	LOC_Os03g18779.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20002	_		_				4	LOC_Os04g01330. WASH complex subunit CCDC53 homolog.	 Tolerance and resistance - Stress tolerance	Os04g0103800 	LOC_Os04g01330.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20003	_		_				7	LOC_Os07g05840.	 Tolerance and resistance - Stress tolerance	Os07g0153150 	LOC_Os07g05840.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20004	_		_				10	LOC_Os10g24004.	 Tolerance and resistance - Stress tolerance	Os10g0381601 	LOC_Os10g24004.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20005	ROPGEF5	OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 5	small GTPase Rac/ROP guanine nucleotide exchange factor 1, GEF for ROP 5, guanine nucleotide exchange factor for Rop 5, Rop-specific GEF5, Rop-specific guanine nucleotide exchange factor 5, Guanine Nucleotide Exchange Factor 7B	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 5	osropgef7b-1	1	OsRopGEF7B in Huang et al. 2018. TO:1000024: palea morphology trait. TO:1000023: lemma morphology trait. TO:1000021: plant ovary morphology.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0849100	LOC_Os01g62990.1				GO:0006952 - defense response, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0048437 - floral organ development	TO:0000112 - disease resistance, TO:0000225 - stamen number, TO:0000650 - lemma length, TO:0006009 - lodicule anatomy and morphology trait, TO:0006038 - floral organ number, TO:0000180 - spikelet fertility	PO:0009067 - filament , PO:0025281 - pollen , PO:0009073 - stigma , PO:0009066 - anther , PO:0020138 - leaf lamina vein , PO:0020121 - lateral root , PO:0005029 - root primordium , PO:0000025 - root tip , PO:0009005 - root , PO:0025477 - floral organ primordium , PO:0000229 - flower meristem 
20006	_	SPIN6, Spin6, SIP11	_	SPL11-interacting Protein 6, SPL11-interacting protein6, SKIP interacting protein 11, SKIPa-interacting protein 11, SKIPa-interacting protein 11			7	LOC_Os07g46450. a Rho GTPase-activating protein (Rho-GAP). the target of the E3 ligase SPL11. Component involved in SPL11-mediated PCD and defense. GO:1900425: negative regulation of defense response to bacterium. GO:2000377: regulation of reactive oxygen species metabolic process. EU368701.	 Tolerance and resistance - Disease resistance	Os07g0658300	LOC_Os07g46450.3, LOC_Os07g46450.2, LOC_Os07g46450.1				GO:0050832 - defense response to fungus, GO:0045824 - negative regulation of innate immune response, GO:0043069 - negative regulation of programmed cell death, GO:0031348 - negative regulation of defense response, GO:0005096 - GTPase activator activity, GO:0007165 - signal transduction	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
20007	_	Spin6.3	_				3	LOC_Os03g11140. a PH/GAP-type SPIN6 homolog.		Os03g0209800	LOC_Os03g11140.4, LOC_Os03g11140.3, LOC_Os03g11140.2, LOC_Os03g11140.1				GO:0007165 - signal transduction, GO:0005096 - GTPase activator activity		
20008	_	Spin6.2	_				3	LOC_Os03g24180. a PH/GAP-type SPIN6 homolog.		Os03g0356638 	LOC_Os03g24180.1				GO:0005737 - cytoplasm, GO:0005096 - GTPase activator activity, GO:0043087 - regulation of GTPase activity, GO:0007165 - signal transduction		
20009	_	OsHUB1, HUB1	_	HISTONE MONOUBIQUITINATION1				the homologous protein of Arabidopsis RING finger E3 ligase HUB1.	 Tolerance and resistance - Disease resistance						GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response	TO:0000615 - abscisic acid sensitivity, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity	
20010	_	OsHUB2, HUB2	_	HISTONE MONOUBIQUITINATION2				the homologous protein of Arabidopsis RING finger E3 ligase HUB2.	 Tolerance and resistance - Disease resistance						GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response	TO:0000615 - abscisic acid sensitivity, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity	
20011	_		_	Dirigent, Dirigent domain-containing protein			1	LOC_Os01g25030. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association.		Os01g0352400 	LOC_Os01g25030.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus		PO:0025025 - root system 
20012	_	OsPOP2, POP2	_	Prolyl Oligopeptidase 2, PROLYL OLIGOPEPTIDASE 2			1	LOC_Os01g42690. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os01g0612500	LOC_Os01g42690.2, LOC_Os01g42690.1				GO:0016787 - hydrolase activity		
20013	_	OsPOP3, POP3	_	Prolyl Oligopeptidase 3, PROLYL OLIGOPEPTIDASE 3			1	LOC_Os01g49510. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os01g0689800/Os01g0689975					GO:0008233 - peptidase activity		
20014	_	OsPOP4, POP4	_	Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4			1	LOC_Os01g57770. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os01g0787600	LOC_Os01g57770.1						
20015	_	OsPOP7, POP7	_	Prolyl Oligopeptidase 7, PROLYL OLIGOPEPTIDASE 7			3	LOC_Os03g19410. Q10MJ1. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os03g0307100	LOC_Os03g19410.1				GO:0008236 - serine-type peptidase activity, GO:0009570 - chloroplast stroma		
20016	_	OsPOP8, POP8	_	Prolyl Oligopeptidase 8, PROLYL OLIGOPEPTIDASE 8			3	LOC_Os03g24450. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os03g0359000	LOC_Os03g24450.1						
20017	_	OsPOP9, POP9	_	Prolyl Oligopeptidase 9, PROLYL OLIGOPEPTIDASE 9			4	LOC_Os04g47360. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os04g0561500	LOC_Os04g47360.1				GO:0004252 - serine-type endopeptidase activity, GO:0070008 - serine-type exopeptidase activity		
20018	_	OsPOP10, POP10	_	Prolyl Oligopeptidase 10, PROLYL OLIGOPEPTIDASE 10			5	LOC_Os05g46210. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os05g0539500	LOC_Os05g46210.1						
20019	_	OsPOP11, POP11	_	Prolyl Oligopeptidase 11, PROLYL OLIGOPEPTIDASE 11			6	LOC_Os06g06770. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0163200	LOC_Os06g06770.2, LOC_Os06g06770.1				GO:0046482 - para-aminobenzoic acid metabolic process, GO:0010260 - organ senescence		
20020	_	OsPOP12, POP12	_	Prolyl Oligopeptidase 12, PROLYL OLIGOPEPTIDASE 12			6	LOC_Os06g11180. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0215300	LOC_Os06g11180.1				GO:0008236 - serine-type peptidase activity, GO:0004177 - aminopeptidase activity		
20021	_	OsPOP13, POP13	_	Prolyl Oligopeptidase 13, PROLYL OLIGOPEPTIDASE 13			6	LOC_Os06g11190. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0215400	LOC_Os06g11190.1				GO:0008236 - serine-type peptidase activity, GO:0004177 - aminopeptidase activity		
20022	_	OsPOP14, POP14	_	Prolyl Oligopeptidase 14, PROLYL OLIGOPEPTIDASE 14			6	LOC_Os06g42730. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0633900	LOC_Os06g42730.1				GO:0008233 - peptidase activity		
20023	_	OsPOP15, POP15	_	Prolyl Oligopeptidase 15, PROLYL OLIGOPEPTIDASE 15			6	LOC_Os06g51410. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0730600	LOC_Os06g51410.2, LOC_Os06g51410.1				GO:0070008 - serine-type exopeptidase activity, GO:0005829 - cytosol, GO:0004252 - serine-type endopeptidase activity, GO:0010048 - vernalization response		
20024	_	OsPOP16, POP16	_	Prolyl Oligopeptidase 16, PROLYL OLIGOPEPTIDASE 16			7	LOC_Os07g41730. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os07g0608300	LOC_Os07g41730.2, LOC_Os07g41730.1				GO:0005783 - endoplasmic reticulum, GO:0019866 - organelle inner membrane, GO:0005886 - plasma membrane, GO:0048573 - photoperiodism, flowering, GO:0048364 - root development		
20025	_	OsPOP17, POP17	_	Prolyl Oligopeptidase 17, PROLYL OLIGOPEPTIDASE 17			7	LOC_Os07g48970. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os07g0689400	LOC_Os07g48970.2, LOC_Os07g48970.1						
20026	_	OsPOP18, POP18	_	Prolyl Oligopeptidase 18, PROLYL OLIGOPEPTIDASE 18			9	LOC_Os09g28040. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os09g0453700	LOC_Os09g28040.1				GO:0004252 - serine-type endopeptidase activity, GO:0016020 - membrane		
20027	_	OsPOP19, POP19	_	Prolyl Oligopeptidase 19, PROLYL OLIGOPEPTIDASE 19			9	LOC_Os09g29950. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os09g0475700	LOC_Os09g29950.3, LOC_Os09g29950.2, LOC_Os09g29950.1				GO:0004252 - serine-type endopeptidase activity, GO:0070008 - serine-type exopeptidase activity, GO:0009507 - chloroplast		
20028	_	OsPOP20, POP20	_	Prolyl Oligopeptidase 20, PROLYL OLIGOPEPTIDASE 20			10	LOC_Os10g04620. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os10g0135600	LOC_Os10g04620.2, LOC_Os10g04620.1				GO:0016787 - hydrolase activity, GO:0009506 - plasmodesma		
20029	_	OsPOP21, POP21	_	Prolyl Oligopeptidase 21, PROLYL OLIGOPEPTIDASE 21			10	LOC_Os10g28020. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os10g0415600	LOC_Os10g28020.4, LOC_Os10g28020.3, LOC_Os10g28020.2, LOC_Os10g28020.1				GO:0004252 - serine-type endopeptidase activity		
20030	_	OsPOP22, POP22	_	Prolyl Oligopeptidase 22, PROLYL OLIGOPEPTIDASE 22			10	LOC_Os10g28030. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os10g0415800	LOC_Os10g28030.2, LOC_Os10g28030.1				GO:0004252 - serine-type endopeptidase activity		
20031	_	OsPOP23, POP23	_	Prolyl Oligopeptidase 23, PROLYL OLIGOPEPTIDASE 23			12	LOC_Os12g18860. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os12g0286600	LOC_Os12g18860.1						
20032	_	OsSBeL1, SBeL1, SBEL1	_	Serine Beta-Lactamase 1, SERINE BETA-LACTAMASE 1			6	LOC_Os06g48770. Serine Beta-Lactamase Family (Peptidase_S12; PF00144). http://rice.plantbiology.msu.edu/ca/gene_fams/27_77.shtml	 Biochemical character	Os06g0701300 	LOC_Os06g48770.2, LOC_Os06g48770.1						
20033	_	OsClp5, CLP5	_	Clp protease 5, CLP PROTEASE 5			3	LOC_Os03g22430. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os03g0344900	LOC_Os03g22430.2, LOC_Os03g22430.1				GO:0004252 - serine-type endopeptidase activity		
20034	_	OsClp7, CLP7	_	Clp protease 7, CLP PROTEASE 7			4	LOC_Os04g44400. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os04g0525600	LOC_Os04g44400.1				GO:0004252 - serine-type endopeptidase activity		
20035	_	OsClp8, CLP8	_	Clp protease 8, CLP PROTEASE 8			5	LOC_Os05g51450. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os05g0592100	LOC_Os05g51450.1				GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0009941 - chloroplast envelope, GO:0004252 - serine-type endopeptidase activity, GO:0009534 - chloroplast thylakoid		
20036	_	OsClp9, CLP9	_	Clp protease 9, CLP PROTEASE 9			6	LOC_Os06g04530. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os06g0136800	LOC_Os06g04530.1				GO:0004252 - serine-type endopeptidase activity, GO:0009534 - chloroplast thylakoid, GO:0009941 - chloroplast envelope, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010207 - photosystem II assembly, GO:0009902 - chloroplast relocation, GO:0010287 - plastoglobule, GO:0042793 - transcription from plastid promoter, GO:0010027 - thylakoid membrane organization, GO:0006364 - rRNA processing, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0035304 - regulation of protein amino acid dephosphorylation		
20037	_	OsClp10, CLP10	_	Clp protease 10, CLP PROTEASE 10			6	LOC_Os06g39712. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character		LOC_Os06g39712				GO:0004252 - serine-type endopeptidase activity		
20038	_	OsClp12, CLP12	_	Clp protease 12, CLP PROTEASE 12			11	LOC_Os11g11210. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os11g0219000	LOC_Os11g11210.1				GO:0009507 - chloroplast		
20039	_	OsClp13, CLP13	_	Clp protease 13, CLP PROTEASE 13			12	LOC_Os12g10590. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character		LOC_Os12g10590				GO:0004252 - serine-type endopeptidase activity		
20040	_	OsLonP1, LONP1	_	Lon protease 1, LON PROTEASE 1			3	LOC_Os03g19350. Lon Protease Pamily (Peptidase_S16; PF05362). http://rice.plantbiology.msu.edu/ca/gene_fams/27_79.shtml GO:0090296: regulation of mitochondrial DNA replication.	 Biochemical character	Os03g0306400	LOC_Os03g19350.1				GO:0043565 - sequence-specific DNA binding, GO:0034599 - cellular response to oxidative stress, GO:0051131 - chaperone-mediated protein complex assembly, GO:0006515 - misfolded or incompletely synthesized protein catabolic process, GO:0070407 - oxidation-dependent protein catabolic process, GO:0005759 - mitochondrial matrix, GO:0004252 - serine-type endopeptidase activity, GO:0005524 - ATP binding, GO:0004176 - ATP-dependent peptidase activity		
20041	_	OsLonP3, LONP3	_	Lon protease 3, LON PROTEASE 3			7	LOC_Os07g48960. Q69UZ3. Lon Protease Pamily (Peptidase_S16; PF05362). http://rice.plantbiology.msu.edu/ca/gene_fams/27_79.shtml GO:0090296: regulation of mitochondrial DNA replication	 Biochemical character	Os07g0689300	LOC_Os07g48960.1				GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004252 - serine-type endopeptidase activity, GO:0004176 - ATP-dependent peptidase activity, GO:0005759 - mitochondrial matrix, GO:0006515 - misfolded or incompletely synthesized protein catabolic process, GO:0034599 - cellular response to oxidative stress, GO:0043565 - sequence-specific DNA binding, GO:0051131 - chaperone-mediated protein complex assembly, GO:0070407 - oxidation-dependent protein catabolic process, GO:0070361 - mitochondrial light strand promoter anti-sense binding, GO:0003697 - single-stranded DNA binding, GO:0007005 - mitochondrion organization		
20042	_	OsSigP1, SIGP1	_	Type I Signal Peptidase 1, TYPE I SIGNAL PEPTIDASE 1			2	LOC_Os02g58139. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os02g0827900	LOC_Os02g58139.3, LOC_Os02g58139.2, LOC_Os02g58139.1				GO:0008233 - peptidase activity, GO:0016021 - integral to membrane, GO:0006465 - signal peptide processing		
20043	_	OsSigP2, SIGP2	_	Type I Signal Peptidase 2, TYPE I SIGNAL PEPTIDASE 2			3	LOC_Os03g55640. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os03g0765200	LOC_Os03g55640.5, LOC_Os03g55640.4, LOC_Os03g55640.3, LOC_Os03g55640.2, LOC_Os03g55640.1				GO:0016021 - integral to membrane, GO:0008236 - serine-type peptidase activity		
20044	_	OsSigP3, SIGP3	_	Type I Signal Peptidase 3, TYPE I SIGNAL PEPTIDASE 3			4	LOC_Os04g08340. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os04g0165600	LOC_Os04g08340.1				GO:0016021 - integral to membrane, GO:0008236 - serine-type peptidase activity		
20045	_	OsSigP4, SIGP4	_	Type I Signal Peptidase 4, TYPE I SIGNAL PEPTIDASE 4			5	LOC_Os05g23260. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os05g0297900	LOC_Os05g23260.1				GO:0008233 - peptidase activity, GO:0006465 - signal peptide processing, GO:0016021 - integral to membrane		
20046	_	OsSigP5, SIGP5	_	Type I Signal Peptidase 5, TYPE I SIGNAL PEPTIDASE 5			6	LOC_Os06g16260. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os06g0273800	LOC_Os06g16260.2, LOC_Os06g16260.1				GO:0006465 - signal peptide processing, GO:0008233 - peptidase activity, GO:0016021 - integral to membrane		
20047	_	OsSigP6, SIGP6	_	Type I Signal Peptidase 6, TYPE I SIGNAL PEPTIDASE 6			9	LOC_Os09g28000. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os09g0453400	LOC_Os09g28000.2, LOC_Os09g28000.1				GO:0016021 - integral to membrane, GO:0008236 - serine-type peptidase activity		
20048	_	OsSigP7, SIGP7	_	Type I Signal Peptidase 7, TYPE I SIGNAL PEPTIDASE 7			11	LOC_Os11g40500. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os11g0620000	LOC_Os11g40500.3, LOC_Os11g40500.2, LOC_Os11g40500.1				GO:0005739 - mitochondrion, GO:0008236 - serine-type peptidase activity, GO:0016020 - membrane		
20049	_	OsProCP1, PROCP1	_	Lysosomal Pro-x Carboxypeptidase 1, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 1			1	LOC_Os01g56150. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os01g0767100	LOC_Os01g56150.1				GO:0008236 - serine-type peptidase activity, GO:0005773 - vacuole, GO:0009507 - chloroplast, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0009086 - methionine biosynthetic process, GO:0004180 - carboxypeptidase activity		
20050	_	OsProCP2, PROCP2	_	Lysosomal Pro-x Carboxypeptidase 2, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 2			6	LOC_Os06g43930. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os06g0647400	LOC_Os06g43930.2, LOC_Os06g43930.1				GO:0008236 - serine-type peptidase activity, GO:0019761 - glucosinolate biosynthetic process, GO:0004180 - carboxypeptidase activity		
20051	_	OsProCP3, PROCP3	_	Lysosomal Pro-x Carboxypeptidase 3, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 3			10	LOC_Os10g36760. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os10g0511400	LOC_Os10g36760.1				GO:0004180 - carboxypeptidase activity, GO:0008236 - serine-type peptidase activity		
20052	_	OsProCP4, PROCP4	_	Lysosomal Pro-x Carboxypeptidase 4, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 4			10	LOC_Os10g36780. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os10g0511600	LOC_Os10g36780.4, LOC_Os10g36780.3, LOC_Os10g36780.2, LOC_Os10g36780.1				GO:0008236 - serine-type peptidase activity		
20053	_	OsProCP5, PROCP5	_	Lysosomal Pro-x Carboxypeptidase 5, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 5			11	LOC_Os11g05760. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os11g0156200	LOC_Os11g05760.1				GO:0008236 - serine-type peptidase activity, GO:0004180 - carboxypeptidase activity		
20054	_	OsCttP1, CTTP1	_	C-terminal processing peptidase 1, C-TERMINAL PROCESSING PEPTIDASE 1			1	LOC_Os01g47450. C-terminal Processing Peptidase Family (Peptidase_S41; PF03572). http://rice.plantbiology.msu.edu/ca/gene_fams/27_82.shtml	 Biochemical character	Os01g0664000	LOC_Os01g47450.1				GO:0031977 - thylakoid lumen, GO:0008236 - serine-type peptidase activity, GO:0016556 - mRNA modification		
20055	_	OsCttP2, CTTP2	_	C-terminal processing peptidase 2, C-TERMINAL PROCESSING PEPTIDASE 2			2	LOC_Os02g57060. C-terminal Processing Peptidase Family (Peptidase_S41; PF03572). http://rice.plantbiology.msu.edu/ca/gene_fams/27_82.shtml	 Biochemical character	Os02g0815700	LOC_Os02g57060.1						
20056	_	OsCttP3, CTTP3	_	C-terminal processing peptidase 3, C-TERMINAL PROCESSING PEPTIDASE 3			6	LOC_Os06g21380. C-terminal Processing Peptidase Family (Peptidase_S41; PF03572). http://rice.plantbiology.msu.edu/ca/gene_fams/27_82.shtml	 Biochemical character	Os06g0318600	LOC_Os06g21380.1				GO:0008236 - serine-type peptidase activity		
20057	_	OsProtIV1, PROTIV1	_	Protease IV 1, PROTEASE IV 1			2	LOC_Os02g49570. Protease IV Family (Peptidase_S49; PF01343). http://rice.plantbiology.msu.edu/ca/gene_fams/27_83.shtml	 Biochemical character	Os02g0728100 	LOC_Os02g49570.1				GO:0004252 - serine-type endopeptidase activity, GO:0006465 - signal peptide processing, GO:0016021 - integral to membrane, GO:0009941 - chloroplast envelope, GO:0009534 - chloroplast thylakoid		
20058	_	OsRhmbd2, RHMBD2	_	Rhomboid 2, RHOMBOID 2			1	LOC_Os01g16330. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os01g0268800	LOC_Os01g16330.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20059	_	OsRhmbd3, RHMBD3	_	Rhomboid 3, RHOMBOID 3			1	LOC_Os01g18100. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os01g0283500	LOC_Os01g18100.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane		
20060	_	OsRhmbd4, RHMBD4	_	Rhomboid 4, RHOMBOID 4			1	LOC_Os01g55740. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os01g0763100	LOC_Os01g55740.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20061	_	OsRhmbd5, RHMBD5	_	Rhomboid 5, RHOMBOID 5			1	LOC_Os01g67040. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os01g0895500	LOC_Os01g67040.2, LOC_Os01g67040.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20062	_	OsRhmbd6, RHMBD6	_	Rhomboid 6, RHOMBOID 6			2	LOC_Os02g22100. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os02g0326700	LOC_Os02g22100.7, LOC_Os02g22100.6, LOC_Os02g22100.5, LOC_Os02g22100.4, LOC_Os02g22100.3, LOC_Os02g22100.2, LOC_Os02g22100.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20063	_	OsRhmbd7, RHMBD7	_	Rhomboid 7, RHOMBOID 7			3	LOC_Os03g02530. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml. up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character	Os03g0116400	LOC_Os03g02530.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity, GO:0009790 - embryonic development		
20064	_	OsRhmbd8, RHMBD8	_	Rhomboid 8, RHOMBOID 8			3	LOC_Os03g24390. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os03g0358200	LOC_Os03g24390.1						
20065	_	OsRhmbd9, RHMBD9	_	Rhomboid 9, RHOMBOID 9			3	LOC_Os03g44830. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os03g0651100	LOC_Os03g44830.3, LOC_Os03g44830.2, LOC_Os03g44830.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20066	_	OsRhmbd10, RHMBD10	_	Rhomboid 10, RHOMBOID 10			4	LOC_Os04g01300. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os04g0103300	LOC_Os04g01300.4, LOC_Os04g01300.3, LOC_Os04g01300.2, LOC_Os04g01300.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20067	_	OsRhmbd11, RHMBD11	_	Rhomboid 11, RHOMBOID 11			4	LOC_Os04g48130. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os04g0569300	LOC_Os04g48130.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20068	_	OsRhmbd12, RHMBD12	_	Rhomboid 12, RHOMBOID 12			5	LOC_Os05g13370. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os05g0220600	LOC_Os05g13370.1				GO:0080140 - regulation of jasmonic acid metabolic process, GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity, GO:0009706 - chloroplast inner membrane		
20069	_	OsRhmbd13, RHMBD13	_	Rhomboid 13, RHOMBOID 13			7	LOC_Os07g46170. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os07g0655400	LOC_Os07g46170.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20070	_	OsRhmbd14, RHMBD14	_	Rhomboid 14, RHOMBOID 14			8	LOC_Os08g43320. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os08g0546700	LOC_Os08g43320.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20071	_	OsRhmbd15, RHMBD15	_	Rhomboid 15, RHOMBOID 15			9	LOC_Os09g28100. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os09g0454100	LOC_Os09g28100.1				GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane, GO:0004252 - serine-type endopeptidase activity		
20072	_	OsRhmbd16, RHMBD16	_	Rhomboid 16, RHOMBOID 16			9	LOC_Os09g35730. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os09g0525900	LOC_Os09g35730.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20073	_	OsRhmbd17, RHMBD17	_	Rhomboid 17, RHOMBOID 17			10	LOC_Os10g37760. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os10g0521900	LOC_Os10g37760.2, LOC_Os10g37760.1				GO:0016485 - protein processing, GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20074	_	OsRhmbd18, RHMBD18	_	Rhomboid 18, RHOMBOID 18			11	LOC_Os11g47840. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os11g0704800	LOC_Os11g47840.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20075	_	OsNucAP2, NUCAP2	_	Nucleoporin Autopeptidase 2, NUCLEOPORIN AUTOPEPTIDASE 2			12	LOC_Os12g06870. Nucleoporin Autopeptidase Family (Peptidase_S59; PF04096). http://rice.plantbiology.msu.edu/ca/gene_fams/27_85.shtmlthe homologue of APIP12. the true orthologue of Nup98 in rice.	 Biochemical character	Os12g0165900	LOC_Os12g06870.1				GO:0005643 - nuclear pore, GO:0006810 - transport		
20076	_	OsNucAP3, NUCAP3	_	Nucleoporin Autopeptidase 3, NUCLEOPORIN AUTOPEPTIDASE 3			12	LOC_Os12g06890. Nucleoporin Autopeptidase Family (Peptidase_S59; PF04096). http://rice.plantbiology.msu.edu/ca/gene_fams/27_85.shtmlthe homologues of APIP12. the true orthologue of Nup98 in rice.	 Biochemical character	Os12g0166000	LOC_Os12g06890.1				GO:0005643 - nuclear pore, GO:0006810 - transport		
20077	_	OsDegp1, DEGP1, OsDeg-like 1	_	Deg protease 1, DEG PROTEASE 1			1	LOC_Os01g17070. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os01g0278600	LOC_Os01g17070.2, LOC_Os01g17070.1						
20078	_	OsDegp2, DEGP2, OsDeg7	_	Deg protease 2, DEG PROTEASE 2			2	LOC_Os02g48180. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os02g0712000					GO:0008233 - peptidase activity		
20079	_	OsDegp3, DEGP3, OsDeg9.1	_	Deg protease 3, DEG PROTEASE 3, Protease Do-like 9			2	LOC_Os02g50880. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml  This is one of the three genes within the candidate gene region on chromosome 2 for root growth QTLs which are upregulated in Azucena compared to Bala. OsDeg9.1 in Schuhmann et al. 2012.	 Biochemical character	Os02g0742500	LOC_Os02g50880.1				GO:0004252 - serine-type endopeptidase activity		
20080	_	OsDegp4, DEGP4, OsDeg-like 6	_	Deg protease 4, DEG PROTEASE 4			3	LOC_Os03g62900. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character		LOC_Os03g62900						
20081	_	OsDegp5, DEGP5, OsDeg8	_	Deg protease 5, DEG PROTEASE 5			4	LOC_Os04g38640. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg8 in Schuhmann et al. 2012.	 Biochemical character	Os04g0459900	LOC_Os04g38640.3, LOC_Os04g38640.2, LOC_Os04g38640.1				GO:0019761 - glucosinolate biosynthetic process, GO:0010206 - photosystem II repair, GO:0010027 - thylakoid membrane organization, GO:0031977 - thylakoid lumen, GO:0019252 - starch biosynthetic process, GO:0004252 - serine-type endopeptidase activity, GO:0009534 - chloroplast thylakoid, GO:0000023 - maltose metabolic process		
20082	_	OsDegp6, DEGP6, OsDeg2	_	Deg protease 6, DEG PROTEASE 6			5	LOC_Os05g05480. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg2 in Schuhmann et al. 2012.	 Biochemical character	Os05g0147500	LOC_Os05g05480.2, LOC_Os05g05480.1				GO:0004252 - serine-type endopeptidase activity		
20083	TCM5	OsDegp7, DEGP7, OsDeg10	THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 5	Deg protease 7, DEG PROTEASE 7, thermo-sensitive chlorophyll-deficient mutant 5		tcm5	5	LOC_Os05g34460. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg10 in Schuhmann et al. 2012.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os05g0417100	LOC_Os05g34460.1				GO:0004252 - serine-type endopeptidase activity, GO:0042548 - regulation of photosynthesis, light reaction, GO:0009408 - response to heat, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization	TO:0000326 - leaf color, TO:0000259 - heat tolerance, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait	
20084	_	OsDegp8, DEGP8, OsDeg15	_	Deg protease 8, DEG PROTEASE 8			5	LOC_Os05g41810. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg15 in Schuhmann et al. 2012.	 Biochemical character	Os05g0497700	LOC_Os05g41810.2, LOC_Os05g41810.1						
20085	_	OsDegp9, DEGP9, OsDeg1	_	Deg protease 9, DEG PROTEASE 9			5	LOC_Os05g49380. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg1 in Schuhmann et al. 2012.	 Biochemical character	Os05g0568900	LOC_Os05g49380.2, LOC_Os05g49380.1				GO:0010206 - photosystem II repair, GO:0015996 - chlorophyll catabolic process, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0009534 - chloroplast thylakoid, GO:0006098 - pentose-phosphate shunt, GO:0004252 - serine-type endopeptidase activity, GO:0005634 - nucleus, GO:0031977 - thylakoid lumen, GO:0019761 - glucosinolate biosynthetic process		
20086	_	OsDegp10, DEGP10, OsDeg9.2	_	Deg protease 10, DEG PROTEASE 10			6	LOC_Os06g12780. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg9.2 in Schuhmann et al. 2012.	 Biochemical character	Os06g0234100	LOC_Os06g12780.1				GO:0004252 - serine-type endopeptidase activity		
20087	_	OsDegp11, DEGP11, OsDeg-like 2	_	Deg protease 11, DEG PROTEASE 11			8	LOC_Os08g04920. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os08g0144400	LOC_Os08g04920.8, LOC_Os08g04920.7, LOC_Os08g04920.6, LOC_Os08g04920.5, LOC_Os08g04920.4, LOC_Os08g04920.3, LOC_Os08g04920.2, LOC_Os08g04920.1						
20088	_	OsDegp12, DEGP12, OsDeg14	_	Deg protease 12, DEG PROTEASE 12			11	LOC_Os11g14170. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg14 in Schuhmann et al. 2012.	 Biochemical character	Os11g0246600	LOC_Os11g14170.1				GO:0004252 - serine-type endopeptidase activity		
20089	_	OsDegp13, DEGP13, OsDeg-like 3	_	Deg protease 13, DEG PROTEASE 13			12	LOC_Os12g04740. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os12g0141500	LOC_Os12g04740.3, LOC_Os12g04740.2, LOC_Os12g04740.1						
20090	_	OsDegp14, DEGP14, OsDeg-like 4	_	Deg protease 14, DEG PROTEASE 14			12	LOC_Os12g04750. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os12g0141600	LOC_Os12g04750.1						
20091	_	OsDegp15, DEGP15, OsDeg5	_	Deg protease 15, DEG PROTEASE 15			12	LOC_Os12g42210. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg5 in Schuhmann et al. 2012.	 Biochemical character	Os12g0616600	LOC_Os12g42210.1				GO:0004252 - serine-type endopeptidase activity		
20092	_	OsSub48, SUB48	_	Subtilisin 48, SUBTILISIN 48			6	Chr6:3203764..3211338. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character								
20093	_	OsSub1, SUB1	_	Subtilisin 1, SUBTILISIN 1			1	LOC_Os01g17160. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0278950/Os01g0279000					GO:0016021 - integral to membrane, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0008270 - zinc ion binding		
20094	_	OsSub2, SUB2, SLP1, OsSLP1	_	Subtilisin 2, SUBTILISIN 2, SUBTILISIN-LIKE PROTEASE 1			1	LOC_Os01g50680. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0702300	LOC_Os01g50680.1				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20095	_	OsSub3, SUB3	_	Subtilisin 3, SUBTILISIN 3			1	LOC_Os01g52750. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0727800/Os01g0727840					GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20096	_	OsSub4, SUB4	_	Subtilisin 4, SUBTILISIN 4			1	LOC_Os01g56320. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0769200	LOC_Os01g56320.1				GO:0004252 - serine-type endopeptidase activity		
20097	_	OsSub7, SUB7	_	Subtilisin 7, SUBTILISIN 7			1	LOC_Os01g58270. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0795100	LOC_Os01g58270.1				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20098	_	OsSub8, SUB8	_	Subtilisin 8, SUBTILISIN 8			1	LOC_Os01g58280. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0795200	LOC_Os01g58280.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20099	_	OsSub10, SUB10	_	Subtilisin 10, SUBTILISIN 10			1	LOC_Os01g64850. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0868800	LOC_Os01g64850.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20100	_	OsSub11, SUB11	_	Subtilisin 11, SUBTILISIN 11			1	LOC_Os01g64860. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0868900	LOC_Os01g64860.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20101	_	OsSub12, SUB12	_	Subtilisin 12, SUBTILISIN 12			2	LOC_Os02g10520. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0198700	LOC_Os02g10520.1				GO:0004252 - serine-type endopeptidase activity		
20102	_	OsSub13, SUB13	_	Subtilisin 13, SUBTILISIN 13			2	LOC_Os02g16940. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0269600	LOC_Os02g16940.1				GO:0004252 - serine-type endopeptidase activity		
20103	_	OsSub14, SUB14	_	Subtilisin 14, SUBTILISIN 14			2	LOC_Os02g17000. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0270200	LOC_Os02g17000.1				GO:0004252 - serine-type endopeptidase activity		
20104	_	OsSub15, SUB15	_	Subtilisin 15, SUBTILISIN 15			2	LOC_Os02g17060. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0270800	LOC_Os02g17060.1				GO:0004252 - serine-type endopeptidase activity		
20105	_	OsSub16, SUB16	_	Subtilisin 16, SUBTILISIN 16			2	LOC_Os02g17080. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0270900	LOC_Os02g17080.1						
20106	_	OsSub17, SUB17	_	Subtilisin 17, SUBTILISIN 17			2	LOC_Os02g17090. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0271000	LOC_Os02g17090.1				GO:0004252 - serine-type endopeptidase activity		
20107	_	OsSub18, SUB18	_	Subtilisin 18, SUBTILISIN 18			2	LOC_Os02g17150. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0271600	LOC_Os02g17150.1				GO:0004252 - serine-type endopeptidase activity		
20108	_	OsSub19, SUB19	_	Subtilisin 19, SUBTILISIN 19			2	LOC_Os02g44520. Q6ESI7. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0664300	LOC_Os02g44520.1				GO:0004177 - aminopeptidase activity, GO:0009630 - gravitropism, GO:0004252 - serine-type endopeptidase activity, GO:0022626 - cytosolic ribosome, GO:0008240 - tripeptidyl-peptidase activity, GO:0009507 - chloroplast, GO:0005774 - vacuolar membrane		
20109	_	OsSub21, SUB21	_	Subtilisin 21, SUBTILISIN 21			2	LOC_Os02g53850. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0779000	LOC_Os02g53850.1				GO:0004252 - serine-type endopeptidase activity		
20110	_	OsSub22, SUB22, OsSASP, SASP	_	Subtilisin 22, SUBTILISIN 22, Senescence-Associated Subtilisin Protease			2	LOC_Os02g53860. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml. the rice orthologue of AtSASP. 	 Biochemical character,  Reproductive organ - Inflorescence	Os02g0779200	LOC_Os02g53860.1				GO:0015996 - chlorophyll catabolic process, GO:0048046 - apoplast, GO:0004252 - serine-type endopeptidase activity, GO:0005774 - vacuolar membrane, GO:0009505 - plant-type cell wall	TO:0000050 - inflorescence branching	
20111	_	OsSub23, SUB23	_	Subtilisin 23, SUBTILISIN 23			2	LOC_Os02g53910. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0779900	LOC_Os02g53910.1				GO:0004252 - serine-type endopeptidase activity		
20112	_	OsSub24, SUB24	_	Subtilisin 24, SUBTILISIN 24			2	LOC_Os02g53970. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0780200	LOC_Os02g53970.1				GO:0004252 - serine-type endopeptidase activity		
20113	_	OsSub25, SUB25	_	Subtilisin 25, SUBTILISIN 25			3	LOC_Os03g02750. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0119300	LOC_Os03g02750.1				GO:0004252 - serine-type endopeptidase activity		
20114	_	OsSub27, SUB27	_	Subtilisin 27, SUBTILISIN 27			3	LOC_Os03g06290. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0158700	LOC_Os03g06290.1				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20115	_	OsSub28, SUB28	_	Subtilisin 28, SUBTILISIN 28			3	LOC_Os03g13930. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0242900	LOC_Os03g13930.1				GO:0005982 - starch metabolic process, GO:0008652 - cellular amino acid biosynthetic process, GO:0016020 - membrane, GO:0004252 - serine-type endopeptidase activity, GO:0007020 - microtubule nucleation, GO:0009832 - plant-type cell wall biogenesis, GO:0009827 - plant-type cell wall modification, GO:0000272 - polysaccharide catabolic process, GO:0010075 - regulation of meristem growth, GO:0009069 - serine family amino acid metabolic process, GO:0019761 - glucosinolate biosynthetic process, GO:0000096 - sulfur amino acid metabolic process		
20116	_	OsSub29, SUB29	_	Subtilisin 29, SUBTILISIN 29			3	LOC_Os03g31630. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0430500	LOC_Os03g31630.1				GO:0004252 - serine-type endopeptidase activity		
20117	_	OsSub31, SUB31	_	Subtilisin 31, SUBTILISIN 31			3	LOC_Os03g55350. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0761500	LOC_Os03g55350.1				GO:0004252 - serine-type endopeptidase activity		
20118	_	OsSub32, SUB32	_	Subtilisin 32, SUBTILISIN 32			4	LOC_Os04g02960. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character		LOC_Os04g02960				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20119	_	OsSub33, SUB33	_	Subtilisin 33, SUBTILISIN 33			4	LOC_Os04g02980. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0120300	LOC_Os04g02990.1, LOC_Os04g02980.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20120	_	OsSub34, SUB34	_	Subtilisin 34, SUBTILISIN 34			4	LOC_Os04g03050. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0121100	LOC_Os04g03050.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20121	_	OsSub35, SUB35	_	Subtilisin 35, SUBTILISIN 35			4	LOC_Os04g03100. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0121300	LOC_Os04g03100.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20122	_	OsSub36, SUB36	_	Subtilisin 36, SUBTILISIN 36			4	LOC_Os04g03710. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0125975/Os04g0126150							
20123	_	OsSub37, SUB37	_	Subtilisin 37, SUBTILISIN 37			4	LOC_Os04g03796. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0127100/Os04g0127200					GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20124	_	OsSub38, SUB38	_	Subtilisin 38, SUBTILISIN 38			4	LOC_Os04g03810. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0127300	LOC_Os04g03810.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20125	_	OsSub39, SUB39	_	Subtilisin 39, SUBTILISIN 39			4	LOC_Os04g03850. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0127600	LOC_Os04g03850.1				GO:0004252 - serine-type endopeptidase activity		
20126	_	OsSub40, SUB40	_	Subtilisin 40, SUBTILISIN 40			4	LOC_Os04g10360. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0182300	LOC_Os04g10360.1				GO:0004252 - serine-type endopeptidase activity		
20127	_	OsSub41, SUB41	_	Subtilisin 41, SUBTILISIN 41			4	LOC_Os04g35140. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0430700	LOC_Os04g35140.1				GO:0004252 - serine-type endopeptidase activity		
20128	_	OsSub43, SUB43	_	Subtilisin 43, SUBTILISIN 43			4	LOC_Os04g47150. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0558900	LOC_Os04g47150.1				GO:0004252 - serine-type endopeptidase activity		
20129	_	OsSub44, SUB44	_	Subtilisin 44, SUBTILISIN 44			4	LOC_Os04g47160. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0559000	LOC_Os04g47160.1				GO:0004252 - serine-type endopeptidase activity		
20130	_	OsSub45, SUB45	_	Subtilisin 45, SUBTILISIN 45			4	LOC_Os04g48416. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0573300	LOC_Os04g48416.1				GO:0004252 - serine-type endopeptidase activity		
20131	_	OsSub46, SUB46	_	Subtilisin 46, SUBTILISIN 46			5	LOC_Os05g30580. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os05g0368700	LOC_Os05g30580.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20132	_	OsSub47, SUB47	_	Subtilisin 47, SUBTILISIN 47			5	LOC_Os05g36010. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os05g0435800	LOC_Os05g36010.1				GO:0004252 - serine-type endopeptidase activity		
20133	_	OsSub49, SUB49	_	Subtilisin 49, SUBTILISIN 49			6	LOC_Os06g06810. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os06g0163500	LOC_Os06g06810.1				GO:0005794 - Golgi apparatus, GO:0004252 - serine-type endopeptidase activity, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0042538 - hyperosmotic salinity response, GO:0006486 - protein amino acid glycosylation		
20134	_	OsSub50, SUB50	_	Subtilisin 50, SUBTILISIN 50			6	LOC_Os06g40700. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os06g0609301/Os06g0609400					GO:0004252 - serine-type endopeptidase activity		
20135	_	OsSub51, SUB51	_	Subtilisin 51, SUBTILISIN 51			6	LOC_Os06g41880. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os06g0624100	LOC_Os06g41880.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20136	_	OsSub52, SUB52	_	Subtilisin 52, SUBTILISIN 52			6	LOC_Os06g48650. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os06g0700000	LOC_Os06g48650.3, LOC_Os06g48650.2, LOC_Os06g48650.1				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity, GO:0016020 - membrane		
20137	_	OsSub53, SUB53	_	Subtilisin 53, SUBTILISIN 53			7	LOC_Os07g39020. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os07g0578300	LOC_Os07g39020.1				GO:0004252 - serine-type endopeptidase activity		
20138	_	OsSub54, SUB54	_	Subtilisin 54, SUBTILISIN 54			7	LOC_Os07g48650. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os07g0685900	LOC_Os07g48650.1				GO:0004252 - serine-type endopeptidase activity		
20139	_	OsSub55, SUB55	_	Subtilisin 55, SUBTILISIN 55			8	LOC_Os08g23740. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os08g0326700	LOC_Os08g23740.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20140	_	OsSub56, SUB56	_	Subtilisin 56, SUBTILISIN 56			8	LOC_Os08g35090. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os08g0452100	LOC_Os08g35090.1, LOC_Os08g35070.1				GO:0004252 - serine-type endopeptidase activity		
20141	_	OsSub57, SUB57	_	Subtilisin 57, SUBTILISIN 57			9	LOC_Os09g26920. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os09g0441000	LOC_Os09g26920.1				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20142	_	OsSub58, SUB58	_	Subtilisin 58, SUBTILISIN 58			9	LOC_Os09g30250. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os09g0479900	LOC_Os09g30250.1				GO:0004252 - serine-type endopeptidase activity		
20143	_	OsSub59, SUB59	_	Subtilisin 59, SUBTILISIN 59			9	LOC_Os09g36110. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os09g0530800	LOC_Os09g36110.1				GO:0004252 - serine-type endopeptidase activity		
20144	_	OsSub60, SUB60	_	Subtilisin 60, SUBTILISIN 60			10	LOC_Os10g25450. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os10g0394200	LOC_Os10g25450.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20145	_	OsSub61, SUB61	_	Subtilisin 61, SUBTILISIN 61			10	LOC_Os10g38080. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os10g0524600	LOC_Os10g38080.1				GO:0004252 - serine-type endopeptidase activity		
20146	_	OsSub62, SUB62	_	Subtilisin 62, SUBTILISIN 62			11	LOC_Os11g15520. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os11g0261600	LOC_Os11g15520.1				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20147	_	OsSub63, SUB63	_	Subtilisin 63, SUBTILISIN 63			12	LOC_Os12g23980. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os12g0427600	LOC_Os12g23980.1				GO:0004252 - serine-type endopeptidase activity		
20148	_	OsGUT1, GUT1	_	glucuronyltransferase 1			10	AB080694. Q33AH8. GO:0071555: cell wall organization.	 Biochemical character	Os10g0180000	LOC_Os10g10080.3, LOC_Os10g10080.2, LOC_Os10g10080.1				GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
20149	_	cp rpl13, cp RPL13, WLP1, RPL13	_	chloroplast ribosomal protein L13, chloroplast RPL13, white leaf and panicle one, white leaf and panicle 1, white leaf and panicles 1		wlp1	1		 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0749200	LOC_Os01g54540.2, LOC_Os01g54540.1				GO:0009658 - chloroplast organization, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation, GO:0009570 - chloroplast stroma, GO:0009579 - thylakoid, GO:0009941 - chloroplast envelope, GO:0009409 - response to cold, GO:0045036 - protein targeting to chloroplast	TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait	PO:0025034 - leaf 
20150	_	orf160, ORF160	_				5			Os05g0243200	LOC_Os05g15360.7, LOC_Os05g15360.6, LOC_Os05g15360.5, LOC_Os05g15360.4, LOC_Os05g15360.3, LOC_Os05g15360.2, LOC_Os05g15360.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
20151	_	ppr564, PPR564	_	pentatricopeptide repeat 564			1	AB244817.		Os01g0897500	LOC_Os01g67210.1						
20152	_		_	Trans-2-enoyl-CoA reductase			11	LOC_Os11g01154.	 Biochemical character	Os11g0102500 	LOC_Os11g01154.4, LOC_Os11g01154.1				GO:0016491 - oxidoreductase activity, GO:0008270 - zinc ion binding		
20153	_		_	Trans-2-enoyl-CoA reductase			12	LOC_Os12g01160.	 Biochemical character	Os12g0102100 	LOC_Os12g01160.1				GO:0008270 - zinc ion binding, GO:0005507 - copper ion binding, GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0016491 - oxidoreductase activity, GO:0005524 - ATP binding		
20154	_		_	Clathrin heavy chain binding			11	LOC_Os11g01380. Q2RBN7.		Os11g0104900/Os11g0104866/Os11g0104933 					GO:0006886 - intracellular protein transport, GO:0030132 - clathrin coat of coated pit, GO:0030130 - clathrin coat of trans-Golgi network vesicle, GO:0005198 - structural molecule activity, GO:0016192 - vesicle-mediated transport		
20155	_		_	Clathrin heavy chain binding			12	LOC_Os12g01390. Q2QYW2.	 Vegetative organ - Leaf	Os12g0104800/Os12g0104766/Os12g0104800 					GO:0016192 - vesicle-mediated transport, GO:0005198 - structural molecule activity, GO:0030132 - clathrin coat of coated pit, GO:0030130 - clathrin coat of trans-Golgi network vesicle, GO:0006886 - intracellular protein transport	TO:0002681 - leaf curling	
20156	_	RPL9, OsRPL9	_	mRNA turnover protein 4, ribosomal protein L9			11	LOC_Os11g01420.	 Tolerance and resistance - Disease resistance,  Other	Os11g0105400	LOC_Os11g01420.1				GO:0006364 - rRNA processing, GO:0000027 - ribosomal large subunit assembly, GO:0042254 - ribosome biogenesis, GO:0005840 - ribosome, GO:0042742 - defense response to bacterium, GO:0000956 - nuclear-transcribed mRNA catabolic process, GO:0005730 - nucleolus	TO:0000175 - bacterial blight disease resistance	
20157	_		_	mRNA turnover protein 4			12	LOC_Os12g01430.		Os12g0105200 	LOC_Os12g01430.2, LOC_Os12g01430.1				GO:0005840 - ribosome, GO:0042254 - ribosome biogenesis		
20158	_		_	Ethanolamine-phosphate cytidylyltransferase			11	LOC_Os11g03050.	 Biochemical character	Os11g0123400	LOC_Os11g03050.1				GO:0003824 - catalytic activity, GO:0009058 - biosynthetic process		
20159	_		_	Ethanolamine-phosphate cytidylyltransferase			12	LOC_Os12g02820.	 Biochemical character	Os12g0121300 	LOC_Os12g02820.1				GO:0016779 - nucleotidyltransferase activity, GO:0009058 - biosynthetic process		
20160	_		_	M-phase phosphoprotein 10			11	LOC_Os11g04200.		Os11g0137100 	LOC_Os11g04200.1				GO:0032040 - small-subunit processome, GO:0034457 - Mpp10 complex		
20161	_		_	M-phase phosphoprotein 10			12	LOC_Os12g04010.		Os12g0133900 	LOC_Os12g04010.1				GO:0005732 - small nucleolar ribonucleoprotein complex, GO:0034457 - Mpp10 complex, GO:0006364 - rRNA processing		
20162	_		_	"\"L-Galactono, 4-lactone dehydrogenase\""			11	LOC_Os11g04740. Q2RAP0.	 Biochemical character	Os11g0143500 	LOC_Os11g04740.1				GO:0016633 - galactonolactone dehydrogenase activity, GO:0003885 - D-arabinono-1,4-lactone oxidase activity, GO:0031966 - mitochondrial membrane, GO:0016021 - integral to membrane, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0050660 - FAD binding		
20163	_		_	"\"L-Galactono, 4-lactone dehydrogenase\""			12	LOC_Os12g04520. Q2QXY1.	 Biochemical character	Os12g0139600	LOC_Os12g04520.1				GO:0019853 - L-ascorbic acid biosynthetic process, GO:0003885 - D-arabinono-1,4-lactone oxidase activity, GO:0016633 - galactonolactone dehydrogenase activity, GO:0031966 - mitochondrial membrane, GO:0050660 - FAD binding, GO:0016021 - integral to membrane		
20164	_		_	AMP-binding enzyme family			11	LOC_Os11g04980. 	 Biochemical character	Os11g0147000 	LOC_Os11g04980.2, LOC_Os11g04980.1				GO:0003824 - catalytic activity		
20165	ALDH5F1	OsALDH5F1, SSADH	ALDEHYDE DEHYDROGENASE 5F1	succinic semialdehyde dehydrogenase, aldehyde dehydrogenase 5F1	ALDEHYDE DEHYDROGENASE 5F1		2	LOC_Os02g07760. CU606989. B9F3B6. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character	Os02g0173900	LOC_Os02g07760.2, LOC_Os02g07760.1				GO:0006540 - glutamate decarboxylation to succinate, GO:0009408 - response to heat, GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity, GO:0051287 - NAD or NADH binding, GO:0006333 - chromatin assembly or disassembly, GO:0005759 - mitochondrial matrix, GO:0005507 - copper ion binding, GO:0004777 - succinate-semialdehyde dehydrogenase activity, GO:0009450 - gamma-aminobutyric acid catabolic process, GO:0009570 - chloroplast stroma, GO:0009416 - response to light stimulus		
20166	ALDH2B2	OsALDH2B2	ALDEHYDE DEHYDROGENASE 2B2	aldehyde dehydrogenase, Aldehyde dehydrogenase 2B2	ALDEHYDE DEHYDROGENASE 2B2		6	LOC_Os06g39230. CU607043. 	 Biochemical character	Os06g0592400	LOC_Os06g39230.1				GO:0004029 - aldehyde dehydrogenase (NAD) activity, GO:0005829 - cytosol		
20167	_	LRK2	_	leucine-rich receptor-like kinase 2			2	DQ195081 (ABA41559.1). AY756174  (AAV33324.1, Oryza rufipogon). LRK2 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1. GO:2000070: regulation of response to water deprivation.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0154000	LOC_Os02g05970.1				GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity, GO:0048527 - lateral root development, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005524 - ATP binding	TO:0001013 - lateral root number, TO:0000447 - filled grain number, TO:0000440 - grain number per plant, TO:0000276 - drought tolerance, TO:0000346 - tiller number	PO:0009066 - anther , PO:0000055 - bud , PO:0009005 - root , PO:0005004 - shoot node 
20168	_	LRK3	_	leucine-rich receptor-like kinase 3			2	DQ195081 (ABA41560.1). AY756174  (AAV33325.1, Oryza rufipogon). LRK3 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.		Os02g0153900	LOC_Os02g05960.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
20169	_	LRK4, OsLRK4	_	leucine-rich receptor-like kinase 4			2	DQ195081 (ABA41561.1). AY756174  (AAV33326.1, Oryza rufipogon). LRK4 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.		Os02g0153700	LOC_Os02g05950.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
20170	_	LRK5, OsLRK5	_	leucine-rich receptor-like kinase 5			2	DQ195081 (ABA41562.1). AY756174  (AAV33327.1, Oryza rufipogon). LRK5 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.		Os02g0153500	LOC_Os02g05940.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
20171	_	LRK7	_	leucine-rich receptor-like kinase 7			2	DQ195081 (ABA41564.1). AY756174  (AAV33329.1, Oryza rufipogon). LRK7 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.		Os02g0153200	LOC_Os02g05920.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
20172	_	LRK8	_	leucine-rich receptor-like kinase 8			2	DQ195081 (ABA41565.1). AY756174  (AAV33330.1, Oryza rufipogon). LRK8 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.		Os02g0153100	LOC_Os02g05910.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
20173	_	LRK1, OsLRK1	_	leucine-rich receptor-like kinase 1			2	AY756174  (AAV33323.1, Oryza rufipogon). LRK1 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.		Os02g0154200	LOC_Os02g05980.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
20174	_	OsATX, ATX	_	antioxidant			1	AJ308374.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0826000	LOC_Os01g61070.1				GO:0030001 - metal ion transport, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009611 - response to wounding, GO:0009416 - response to light stimulus, GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus	TO:0000021 - copper sensitivity, TO:0000074 - blast disease, TO:0000075 - light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
20175	_	OsGABA-T, GABA-T	_	gamma-aminobutyrate transaminase			2	AF324485. Q6ZH29. transaminase-like protein induced by blast fungus. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0112900	LOC_Os02g02210.1				GO:0009411 - response to UV, GO:0010941 - regulation of cell death, GO:0050832 - defense response to fungus, GO:0030170 - pyridoxal phosphate binding, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009611 - response to wounding, GO:0008483 - transaminase activity, GO:0005737 - cytoplasm	TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000160 - UV light sensitivity	
20176	_	IPI, ipi	_	isopentenyl diphosphate isomerase, IPP isomerase			7	AF188065.	 Biochemical character	Os07g0546000	LOC_Os07g36190.1				GO:0004452 - isopentenyl-diphosphate delta-isomerase activity, GO:0008299 - isoprenoid biosynthetic process, GO:0016787 - hydrolase activity		
20177	_	OsAUR1, AUR1	_	Aurora kinase 1				AB193736.									
20178	_	OsAUR2, AUR2	_	Aurora kinase 2				AB193737.									
20179	ALDH1A	ALDH1a, Aldh1a, OsALDH1a, OsALDH2C4, ALDH2C4	ALDEHYDE DEHYDROGENASE 1A	aldehyde dehydrogenase 1a, aldehyde dehydrogenase 2C4	ALDEHYDE DEHYDROGENASE 1A		1	LOC_Os01g40860. AB037421. cytosolic ALDH1. OsALDH2C4 in Simeon et al. 2010.	 Biochemical character	Os01g0591000	LOC_Os01g40860.1				GO:0005829 - cytosol, GO:0004029 - aldehyde dehydrogenase (NAD) activity		PO:0009005 - root 
20180	_	OsmMDH, mMDH	_	mitochondrial malate dehydrogenase, mitochondrial MDH			1	AF444195.	 Biochemical character	Os01g0649100	LOC_Os01g46070.1				GO:0006108 - malate metabolic process, GO:0030060 - L-malate dehydrogenase activity, GO:0005739 - mitochondrion, GO:0005975 - carbohydrate metabolic process, GO:0006099 - tricarboxylic acid cycle		
20181	_	OsPAA2, PAA2	_	20S proteasome alpha2 subunit			7	AB032062.	 Biochemical character	Os07g0614100	LOC_Os07g42260.2, LOC_Os07g42260.1				GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus		
20182	_	OsCOX6b1, COX6b1, OsCOX6b-1, COX6b-1	_	cytochrome c oxidase subunit VIb-1			3	AB025187.	 Biochemical character	Os03g0390400	LOC_Os03g27290.1				GO:0005507 - copper ion binding, GO:0004129 - cytochrome-c oxidase activity, GO:0005739 - mitochondrion, GO:0009853 - photorespiration, GO:0009535 - chloroplast thylakoid membrane		
20183	_	OsCOX6b2, COX6b2, OsCOX6b-2, COX6b-2	_	cytochrome c oxidase subunit VIb-2			4	AB047923. AU030446.	 Biochemical character	Os04g0498200					GO:0004129 - cytochrome-c oxidase activity, GO:0005739 - mitochondrion		
20184	_	OsPI-PLC1, PI-PLC1, OsPLC1, PLC1	_	phosphoinositide-specific phospholipase C1, phospholipase C1		osplc1	7	LOC_Os07g49330. AF332874. GO:0035556: intracellular signal transduction.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0694000	LOC_Os07g49330.3, LOC_Os07g49330.1				GO:0005634 - nucleus, GO:0004435 - phosphoinositide phospholipase C activity, GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0016042 - lipid catabolic process, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0050850 - positive regulation of calcium-mediated signaling, GO:0010229 - inflorescence development	TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000315 - bacterial disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000608 - sodium content	PO:0001083 - inflorescence development stage , PO:0000284 - subsidiary cell , PO:0000293 - guard cell 
20185	_	PcSrp, Srp	_	serine-rich-protein				AF110148 (Oryza coarctata (Porteresia coarctata)).	 Tolerance and resistance - Stress tolerance						GO:0050801 - ion homeostasis, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
20186	_	OsRFC3, RFC3	_	Replication Factor C3			2	A plant homologue of 36 kDa subunit (a small subunit) of replication factor C. AB038319. Q6YZ54.	 Other	Os02g0775200	LOC_Os02g53500.2, LOC_Os02g53500.1				GO:0031048 - chromatin silencing by small RNA, GO:0016246 - RNA interference, GO:0009909 - regulation of flower development, GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005737 - cytoplasm, GO:0009560 - embryo sac egg cell differentiation, GO:0043617 - cellular response to sucrose starvation, GO:0051567 - histone H3-K9 methylation, GO:0048449 - floral organ formation, GO:0031348 - negative regulation of defense response, GO:0006312 - mitotic recombination, GO:0005634 - nucleus, GO:0006260 - DNA replication, GO:0006346 - methylation-dependent chromatin silencing		PO:0000025 - root tip , PO:0025034 - leaf 
20187	PCS1	OsPCS1, OsPCS2, PCS2	PHYTOCHELATIN SYNTHASE 1	Phytochelatin Synthase 1	PHYTOCHELATIN SYNTHASE 1	has2	5	LOC_Os05g34290. LC314600. AF439787. TO:0006059: cadmium concentration. TO:0006054: arsenic concentration. OsPCS2 in Uraguchi et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0415200	LOC_Os05g34290.1				GO:0046938 - phytochelatin biosynthetic process, GO:0043181 - vacuolar sequestering, GO:0015691 - cadmium ion transport, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0046872 - metal ion binding, GO:0046911 - metal chelating activity, GO:0046685 - response to arsenic, GO:0016756 - glutathione gamma-glutamylcysteinyltransferase activity, GO:0055073 - cadmium ion homeostasis	TO:0000080 - micronutrient sensitivity	PO:0009005 - root 
20188	_		_				3	R gene homolog. disease-resistance-like gene. AF392809, AF392810, AF392813, AF392815, AF392816, AF392831, AF392833, AF392834, AF392836, AF392837, AF392838, AF392840, AF392842, AF392852, AF392854, AF392855, AF392856, AF392857, AF392858, AF392865.	 Tolerance and resistance - Disease resistance	Os03g0579800							
20189	_		_				11	R gene homolog. disease-resistance-like gene. AF392811, AF392819, AF392844, AF392845.	 Tolerance and resistance - Disease resistance	Os11g0227100	LOC_Os11g11990.1				GO:0043531 - ADP binding		
20190	_	OsNADPH1, NADPH1	_	NADPH oxidoreductase 1			4	AB246888.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0497000	LOC_Os04g41960.1				GO:0016491 - oxidoreductase activity, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20191	COLD1		CHILLING TOLERANCE DIVERGENCE 1			cold1-1	4	LOC_Os04g51180. Q7X7S8.	 Tolerance and resistance - Stress tolerance	Os04g0600800	LOC_Os04g51180.2, LOC_Os04g51180.1				GO:0005886 - plasma membrane, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0051020 - GTPase binding, GO:0070417 - cellular response to cold, GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane	TO:0000303 - cold tolerance	
20192	COLD2		CHILLING TOLERANCE DIVERGENCE 2				8	Marker Interval: RM23268-RM3155.	 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20193	COLD3		CHILLING TOLERANCE DIVERGENCE 3				1	Marker Interval: RM8078-RM8133.	 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20194	COLD4		CHILLING TOLERANCE DIVERGENCE 4				6	Marker Interval: RM4608-RM6836_2.	 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20195	COLD5		CHILLING TOLERANCE DIVERGENCE 5				2	Marker Interval: RM13550-RM4499.	 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20196	_	YDA2, OsYDA2	_	YODA 2, OsYODA2, YODA2	_		2	LOC_Os02g44642. a mitogen-activated protein kinase kinase kinase (MAPKKK). a homolog of A. thaliana  YODA.		Os02g0666300 	LOC_Os02g44642.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
20197	_		_				1	BF889444. The closest homolog: Victorin binding protein [Avena sativa] (U11693).	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0711400	LOC_Os01g51410.2, LOC_Os01g51410.1				GO:0050832 - defense response to fungus, GO:0006546 - glycine catabolic process, GO:0004375 - glycine dehydrogenase (decarboxylating) activity	TO:0000074 - blast disease	
20198	_		_				7	BF889448. The closest homolog: RNA binding protein [Arabidopsis thaliana] (AB008022).	 Tolerance and resistance - Disease resistance	Os07g0124600	LOC_Os07g03240.1				GO:0008283 - cell proliferation, GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0003727 - single-stranded RNA binding, GO:0000166 - nucleotide binding	TO:0000074 - blast disease	
20199	_		_				1	BF889449. The closest homolog: Putative receptor-like protein kinase [Arabidopsis thaliana] (AL163527).	 Tolerance and resistance - Disease resistance	Os01g0631700	LOC_Os01g44110.1				GO:0031625 - ubiquitin protein ligase binding, GO:0046777 - protein amino acid autophosphorylation, GO:0050832 - defense response to fungus, GO:0001653 - peptide receptor activity, GO:0005886 - plasma membrane, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0009506 - plasmodesma, GO:0009755 - hormone-mediated signaling, GO:0005524 - ATP binding	TO:0000074 - blast disease	
20200	_		_				2	BF889455. The closest homolog: Putative beta-ketoacyl-CoA synthase [Arabidopsis thaliana] (AC003105).	 Biochemical character	Os02g0205500	LOC_Os02g11070.2, LOC_Os02g11070.1				GO:0016020 - membrane, GO:0006633 - fatty acid biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000172 - jasmonic acid sensitivity	
20201	_		_				1	BF889456. The closest homolog: An unknown protein [Arabidopsis thaliana] (AC022354).		Os01g0760000	LOC_Os01g55510.1				GO:0007017 - microtubule-based process, GO:0005875 - microtubule associated complex, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
20202	_		_				1	BF889457.	 Tolerance and resistance - Disease resistance	Os01g0714600	LOC_Os01g51670.1				GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease	
20203	_	CHI2, OsCHI2	_	chalcone isomerase 2			6	BF889469. The closest homolog: Hypothetical protein from [Arabidopsis thaliana] (AC004484).	 Biochemical character	Os06g0203600	LOC_Os06g10210.3, LOC_Os06g10210.2, LOC_Os06g10210.1				GO:0005504 - fatty acid binding, GO:0006631 - fatty acid metabolic process, GO:0009813 - flavonoid biosynthetic process, GO:0009570 - chloroplast stroma, GO:0009753 - response to jasmonic acid stimulus, GO:0045430 - chalcone isomerase activity, GO:0016872 - intramolecular lyase activity	TO:0000172 - jasmonic acid sensitivity	
20204	_		_				4	BF889472. The closest homolog: Hypothetical protein from [Arabidopsis thaliana] (AC002335).		Os04g0492400	LOC_Os04g41500.2, LOC_Os04g41500.1				GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
20205	_		_				6	BF889477. The closest homolog: An unknown protein [Arabidopsis thaliana] (AC011663).		Os06g0254700	LOC_Os06g14370.4, LOC_Os06g14370.3, LOC_Os06g14370.2, LOC_Os06g14370.1				GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
20206	_		_				4	BF889478. 	 Tolerance and resistance - Disease resistance	Os04g0584700	LOC_Os04g49520.1				GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease	
20207	_		_				9	BF889479. Q67UU0. The closest homolog: RSH2: Rel-SpoT homology [Arabidopsis thaliana] (AF225703).	 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0442600	LOC_Os09g27050.1				GO:0015969 - guanosine tetraphosphate metabolic process, GO:0005524 - ATP binding, GO:0005525 - GTP binding, GO:0008728 - GTP diphosphokinase activity, GO:0009507 - chloroplast, GO:0009753 - response to jasmonic acid stimulus, GO:0016301 - kinase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
20208	RPN7	OsRpn7, Rpn7	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 7	19S regulatory particle non-ATPase subunit 7, RP non-ATPase 7	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 7		4	BF889481. Q8W425. The closest homolog: Putative proteasome regulatory subunit [Arabidopsis thaliana] (AL049657). a 19S regulatory particle subunit from the rice 26S proteasome. AU162497, AU032134. AB037149.	 Biochemical character	Os04g0485000	LOC_Os04g40850.2, LOC_Os04g40850.1	GR:0061396			GO:0000502 - proteasome complex		
20209	RPL13B	RPL13b, OsRPL13b	RIBOSOMAL PROTEIN L13B	ribosomal protein L13b	RIBOSOMAL PROTEIN L13B		3	LOC_Os03g37970.1 BF889482. The closest homolog: Unknown protein (BnC24B) [Brassica napus] (S37133).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0576700	LOC_Os03g37970.1				GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0003735 - structural constituent of ribosome, GO:0042742 - defense response to bacterium, GO:0005840 - ribosome, GO:0006412 - translation, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0003723 - RNA binding, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0022625 - cytosolic large ribosomal subunit	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0020032 - plumule 
20210	_		_				2	BF889483. The closest homolog: Putative diacylglycerol kinase [Arabidopsis thaliana] (AC005724).	 Tolerance and resistance - Disease resistance	Os02g0787800	LOC_Os02g54650.1				GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0004143 - diacylglycerol kinase activity, GO:0005524 - ATP binding, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
20211	_		_					BF889439. The closest homolog: Glycine-rich protein mRNA [Oryza sativa] (AF001894).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
20212	_		_					BF889442. The closest homolog: Neutral invertase, putative [Arabidopsis thaliana] (AC020580).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
20213	_		_					BF889445. The closest homolog: Lipid transfer protein [Oryza sativa] (AF051369).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
20214	_	RVDE1	_				4	AF411133. AY886183-AY886212 and DQ374941-DQ374967  (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).	 Biochemical character	Os04g0379700	LOC_Os04g31040.3, LOC_Os04g31040.1				GO:0008652 - cellular amino acid biosynthetic process, GO:0000096 - sulfur amino acid metabolic process, GO:0006098 - pentose-phosphate shunt, GO:0006364 - rRNA processing, GO:0006546 - glycine catabolic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0006766 - vitamin metabolic process, GO:0009072 - aromatic amino acid family metabolic process, GO:0009106 - lipoate metabolic process, GO:0009108 - coenzyme biosynthetic process, GO:0009408 - response to heat, GO:0009416 - response to light stimulus, GO:0009534 - chloroplast thylakoid, GO:0009695 - jasmonic acid biosynthetic process, GO:0009965 - leaf morphogenesis, GO:0010028 - xanthophyll cycle, GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0019216 - regulation of lipid metabolic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019748 - secondary metabolic process, GO:0030154 - cell differentiation, GO:0031408 - oxylipin biosynthetic process, GO:0031977 - thylakoid lumen, GO:0044272 - sulfur compound biosynthetic process, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0046422 - violaxanthin de-epoxidase activity		
20215	_		_				10	AY886213-AY886237 and DQ374968-DQ374993 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os10g0159600 	LOC_Os10g07200.1						
20216	_		_				8	AY886270-AY886299 and DQ375022-DQ375045 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).	 Biochemical character	Os08g0158200 	LOC_Os08g06170.1				GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0050660 - FAD binding		
20217	_		_				12	AY886300-AY886331 and DQ375046-DQ375073 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os12g0552800 	LOC_Os12g36680.1						
20218	_		_				1	AY886332-AY886362 and DQ375074-DQ375100 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).	 Other	Os01g0893400	LOC_Os01g66890.3, LOC_Os01g66890.2, LOC_Os01g66890.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009954 - proximal/distal pattern formation, GO:0009555 - pollen development, GO:0048573 - photoperiodism, flowering, GO:0048439 - flower morphogenesis, GO:0010227 - floral organ abscission, GO:0009553 - embryo sac development, GO:0008270 - zinc ion binding, GO:0003712 - transcription cofactor activity, GO:0004402 - histone acetyltransferase activity		
20219	_		_				7	AY886391-AY886421 and DQ375101-DQ375124 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os07g0537000	LOC_Os07g35260.2, LOC_Os07g35260.1				GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0031625 - ubiquitin protein ligase binding, GO:0006952 - defense response, GO:0009755 - hormone-mediated signaling, GO:0005524 - ATP binding, GO:0001653 - peptide receptor activity, GO:0046777 - protein amino acid autophosphorylation, GO:0006468 - protein amino acid phosphorylation		
20220	_		_				9	AY886422-AY886447 and DQ375125-DQ375151 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os09g0428900	LOC_Os09g25950.1						
20221	_		_				10	Q337C0. AY886448-AY886477 and DQ375152-DQ375179 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os10g0513300 	LOC_Os10g36950.1				GO:0016021 - integral to membrane		
20222	_		_				11	AY886478-AY886508 and DQ375180-DQ375207 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).	 Biochemical character	Os11g0215400 	LOC_Os11g10910.1				GO:0004190 - aspartic-type endopeptidase activity		
20223	_		_	isocitrate dehydrogenase			5	LOC_Os05g49760.	 Biochemical character	Os05g0573200 	LOC_Os05g49760.1				GO:0006099 - tricarboxylic acid cycle, GO:0004450 - isocitrate dehydrogenase (NADP+) activity, GO:0000287 - magnesium ion binding, GO:0051287 - NAD or NADH binding, GO:0006102 - isocitrate metabolic process		
20224	_	OsIFCC009208	_					CL963313. R Gene present in 9311 only. (not in Nipponbare). EF533794-EF533802 (O.sativa and O.rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20225	_	OsIFCC035754	_					CL981165. R Gene present in 9311 only. (not in Nipponbare). EF533836-EF533841 (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20226	_	OsIFSC047991	_					CL981776. R Gene present in 9311 only. (not in Nipponbare).  EF533863-EF533871  (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20227	_	OsIFCC019895	_					R Gene present in 9311 only. (not in Nipponbare).	 Tolerance and resistance - Disease resistance								
20228	_	OsIFCC035751	_					CL981162. R Gene present in 9311 only. (not in Nipponbare). EF533831-EF533835 (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20229	_	OsIFCC035229	_					CL980895. R Gene present in 9311 only. (not in Nipponbare).	 Tolerance and resistance - Disease resistance								
20230	_	OsIFCC043050	_				8	CL975065. R Gene present in 9311 only. (not in Nipponbare). EF533848-EF533853 (partial cds).	 Tolerance and resistance - Disease resistance								
20231	_	OsIFCC045542	_					CL980874. R Gene present in 9311 only. (not in Nipponbare). EF533854-EF533857 (partial cds).	 Tolerance and resistance - Disease resistance								
20232	_	OsIFCC023444	_					CL972735. R Gene present in 9311 only. (not in Nipponbare). EF533814-EF5338211 (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20233	_	OsIFCC026523	_					CL974753. R Gene present in 9311 only. (not in Nipponbare). EF533822 (partial cds).	 Tolerance and resistance - Disease resistance								
20234	_	OsIFSC046156	_					R Gene present in 9311 only. (not in Nipponbare).	 Tolerance and resistance - Disease resistance								
20235	_		_				11	LOC_Os11g15670. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os11g0263000 	LOC_Os11g15700.1, LOC_Os11g15670.1				GO:0043531 - ADP binding		
20236	_		_				1	LOC_Os01g20720. R Gene present in both Nipponbare and 9311. EF533726-EF533728 (partial cds).	 Tolerance and resistance - Disease resistance	Os01g0308300 	LOC_Os01g20720.1				GO:0043531 - ADP binding		
20237	_		_				4	LOC_Os04g41370. R Gene present in both Nipponbare and 9311. EF533735-EF533746 (partial cds).	 Tolerance and resistance - Disease resistance	Os04g0491000 	LOC_Os04g41370.1				GO:0043531 - ADP binding		
20238	_		_	Pib homologue			12	LOC_Os12g37270. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os12g0559300 	LOC_Os12g37270.1				GO:0043531 - ADP binding		
20239	_		_				12	LOC_Os12g03750 (OsIFCC032042 and OsIFCC032029 in 93-11). R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os12g0131500/Os12g0131701 					GO:0043531 - ADP binding		
20240	_		_				1	LOC_Os01g57270. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os01g0781100  	LOC_Os01g57270.2, LOC_Os01g57270.1				GO:0043531 - ADP binding		
20241	PI64	Pi64	PYRICULARIA ORYZAE RESISTANCE 64	Magnaporthe grisea resistance-64, Blast resistance 64			1	LOC_Os01g57280. R Gene present in both Nipponbare and 9311. a CC-NBS-LRR Protein.	 Tolerance and resistance - Disease resistance	Os01g0781200 	LOC_Os01g57280.3, LOC_Os01g57280.2, LOC_Os01g57280.1				GO:0050832 - defense response to fungus, GO:0043531 - ADP binding, GO:0005634 - nucleus	TO:0000074 - blast disease, TO:0000468 - leaf blast disease resistance	
20242	_		_				5	LOC_Os05g16180. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os05g0250600 	LOC_Os05g16180.1				GO:0043531 - ADP binding		
20243	_		_				5	LOC_Os05g16200. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os05g0250700  	LOC_Os05g16200.1				GO:0043531 - ADP binding		
20244	_		_				11	LOC_Os11g47780. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os11g0704100 	LOC_Os11g47780.1				GO:0043531 - ADP binding		
20245	_		_				8	LOC_Os08g10430. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os08g0205100 	LOC_Os08g10430.1				GO:0043531 - ADP binding		
20246	_		_				8	LOC_Os08g10440. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os08g0205150 	LOC_Os08g10440.1				GO:0043531 - ADP binding		
20247	_	OsIFCC040819	_					CL969427. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance								
20248	_		_				2	LOC_Os02g50372. This is one of the three genes within the candidate gene region on chromosome 2 for root growth QTLs which are upregulated in Azucena compared to Bala.		Os02g0736800 	LOC_Os02g50372.1						
20249	_		_				5	LOC_Os05g40910. This is one of the four genes within the candidate gene region on chromosome 5 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Biochemical character	Os05g0488000 	LOC_Os05g40910.1				GO:0008234 - cysteine-type peptidase activity		
20250	_	UGT705A3, OsUGT705A3	_	Cytokinin-O-glucosyltransferase 1, UDP-dependent glycosyltransferase 705A3			5	LOC_Os05g42040. This is one of the four genes within the candidate gene region on chromosome 5 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Biochemical character	Os05g0499800 	LOC_Os05g42040.1				GO:0016758 - transferase activity, transferring hexosyl groups		
20251	_	OsCCR15, CCR15	_	Dihydroflavonol-4-reductase, Cinnamoyl-CoA reductase 15			9	LOC_Os09g31490. EU605830. This is one of the two genes within the candidate gene region on chromosome 9 for root growth QTLs which are significantly higher in expression in Azucena.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0491788 	LOC_Os09g31490.1				GO:0050662 - coenzyme binding, GO:0009414 - response to water deprivation, GO:0003824 - catalytic activity	TO:0000276 - drought tolerance	
20252	_		_				9	LOC_Os09g32169. This is one of the two genes within the candidate gene region on chromosome 9 for root growth QTLs which are significantly higher in expression in Azucena.									
20253	SRP RNA	SRP RNA	SIGNAL RECOGNITION PARTICLE RNA	signal recognition particle RNA			10	HG323740.							GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, GO:0048501 - signal recognition particle, plasma membrane targeting		
20254	SRP RNA	SRP RNA	SIGNAL RECOGNITION PARTICLE RNA	signal recognition particle RNA			1	HG323741, HG323742.							GO:0048501 - signal recognition particle, plasma membrane targeting, GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition		
20255	AAH	OsAAH	ALLANTOATE AMIDOHYDROLASE	allantoate amidohydrolase	ALLANTOATE AMIDOHYDROLASE		6	LOC_Os06g45480. Q655X8. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0665500	LOC_Os06g45480.2, LOC_Os06g45480.1				GO:0010136 - ureide catabolic process, GO:0006144 - purine base metabolic process, GO:0015996 - chlorophyll catabolic process, GO:0000256 - allantoin catabolic process, GO:0008237 - metallopeptidase activity, GO:0046872 - metal ion binding, GO:0047652 - allantoate deiminase activity, GO:0005783 - endoplasmic reticulum	TO:0000011 - nitrogen sensitivity	
20256	UAH	OsUAH	UREIDOGLYCOLATE AMIDOHYDROLASE	ureidoglycolate amidohydrolase	UREIDOGLYCOLATE AMIDOHYDROLASE		12	LOC_Os12g40550. Q2QMN7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0597500	LOC_Os12g40550.1				GO:0000256 - allantoin catabolic process, GO:0009409 - response to cold, GO:0010136 - ureide catabolic process, GO:0046872 - metal ion binding, GO:0009086 - methionine biosynthetic process, GO:0006144 - purine base metabolic process, GO:0005783 - endoplasmic reticulum, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0004848 - ureidoglycolate hydrolase activity	TO:0000303 - cold tolerance	
20257	UGlyAH	OsUGlyAH	UREIDOGLYCINE AMINOHYDROLASE	Ureidoglycine aminohydrolase	UREIDOGLYCINE AMINOHYDROLASE		7	LOC_Os07g31270. Q7F1K9.	 Biochemical character	Os07g0495000 	LOC_Os07g31270.1				GO:0019252 - starch biosynthetic process, GO:0043085 - positive regulation of catalytic activity, GO:0000023 - maltose metabolic process, GO:0071522 - ureidoglycine aminohydrolase activity, GO:0003700 - transcription factor activity, GO:0046872 - metal ion binding, GO:0006144 - purine base metabolic process, GO:0005783 - endoplasmic reticulum, GO:0000256 - allantoin catabolic process		
20258	ALN	OsALN	ALLANTOINASE	allantoin amidohydrolase, allantoinase	ALLANTOINASE		4	LOC_Os04g58390. B9FDB8. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0680400 	LOC_Os04g58390.1				GO:0008270 - zinc ion binding, GO:0050897 - cobalt ion binding, GO:0010136 - ureide catabolic process, GO:0000256 - allantoin catabolic process, GO:0005783 - endoplasmic reticulum, GO:0006144 - purine base metabolic process, GO:0004038 - allantoinase activity	TO:0000011 - nitrogen sensitivity	
20259	FLO7	Flo7, flo7(t), flo-7	FLOURY ENDOSPERM 7	floury endosperm7, floury-7, floury 7		flo7	5	A recessive floury gene in Suweon 542 named flo7(t) is located in the 19.33-19.86 Mbp region of chromosome 5, with RM18639. flo7(t) is physically linked to flo4, or might be another mutated allele of the OsPPDKB gene.	 Seed - Physiological traits - Storage substances							TO:0000104 - floury endosperm	
20260	_	OsDof1, Dof1, OsDof-1	_	Dof zinc factor 1, Dof transcription factor 1			1	LOC_Os01g64590.	 Other	Os01g0865800	LOC_Os01g64590.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
20261	_	OsDof3, Dof3, OsDof-3	_	Dof zinc factor 3, Dof transcription factor 3			1	LOC_Os01g09720.	 Other		LOC_Os01g09720				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
20262	_	OsDof4, Dof4, OsDof-4, Dof-4	_	Dof zinc factor 4, Dof transcription factor 4			1	LOC_Os01g17000.	 Reproductive organ - Heading date,  Other	Os01g0277500 	LOC_Os01g17000.1				GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0007623 - circadian rhythm	TO:0000137 - days to heading	
20263	_	OsDof5, Dof5, OsDof-5	_	Dof zinc factor 5, Dof transcription factor 5			1	LOC_Os01g48290.	 Other	Os01g0673700	LOC_Os01g48290.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
20264	_		_	CYP450-Like Gene, CYP-like protein			8	LOC_Os08g01480. GO:0044550: secondary metabolite biosynthetic process. GO:0090354: regulation of auxin metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0105700 	LOC_Os08g01480.1				GO:0009790 - embryonic development, GO:0048366 - leaf development, GO:0009416 - response to light stimulus, GO:0006915 - apoptosis, GO:0009908 - flower development, GO:0020037 - heme binding, GO:0000910 - cytokinesis, GO:0009826 - unidimensional cell growth, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane, GO:0010038 - response to metal ion, GO:0009850 - auxin metabolic process, GO:0009628 - response to abiotic stimulus, GO:0005506 - iron ion binding, GO:0006952 - defense response, GO:0010118 - stomatal movement	TO:0000620 - embryo development trait, TO:0000622 - flower development trait, TO:0000075 - light sensitivity, TO:0000248 - primary macronutrient sensitivity, TO:0000168 - abiotic stress trait, TO:0000655 - leaf development trait	PO:0007631 - plant embryo stage , PO:0001031 - 4 root elongation stage , PO:0001050 - leaf development stage , PO:0007615 - flower development stage 
20265	_	PR5	_	pathogenesis-related gene 5, PATHOGENESIS-RELATED PROTEINS5			8	LOC_Os08g04580.	 Tolerance and resistance - Disease resistance	Os08g0140700/Os08g0140850					GO:0006950 - response to stress, GO:0006952 - defense response, GO:0016021 - integral to membrane		
20266	GSD1	OsREM6.6, REM6.6, OsGSD1	GRAIN SETTING DEFECT1	Grain setting defect1, Grain setting defect 1, Remorin 6.6, remorin group 6 member 6	REMORIN 6.6	gsd1, gsd1-D	4	LOC_Os04g52920.	 Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os04g0620200	LOC_Os04g52920.2, LOC_Os04g52920.1				GO:0010431 - seed maturation, GO:0005886 - plasma membrane, GO:0008643 - carbohydrate transport, GO:0009506 - plasmodesma, GO:0010497 - plasmodesmata-mediated intercellular transport	TO:0000399 - grain thickness, TO:0002661 - seed maturation, TO:0000291 - carbohydrate content, TO:0000333 - sugar content, TO:0006005 - fructose content, TO:0000300 - glucose content, TO:0000328 - sucrose content, TO:0000696 - starch content, TO:0000382 - 1000-seed weight	PO:0000071 - companion cell , PO:0007632 - seed maturation stage 
20267	REM0.1	OsREM0.1	REMORIN 0.1	Remorin 0.1, remorin group 0 member 1	REMORIN 0.1		2			Os02g0658400 	LOC_Os02g44102.1						
20268	REM0.2	OsREM0.2	REMORIN 0.2	Remorin 0.2, remorin group 0 member 2	REMORIN 0.2		10			Os10g0325400 	LOC_Os10g17790.1						
20269	REM1.1	OsREM1.1	REMORIN 1.1	Remorin 1.1, remorin group 1 member 1	REMORIN 1.1		2			Os02g0824500 	LOC_Os02g57840.2, LOC_Os02g57840.1				GO:0003677 - DNA binding		
20270	REM1.2	OsREM1.2	REMORIN 1.2	Remorin 1.2, remorin group 1 member 2	REMORIN 1.2		10	LOC_Os10g36000.		Os10g0503800 	LOC_Os10g36000.3, LOC_Os10g36000.2, LOC_Os10g36000.1						
20271	REM1.3	OsREM1.3	REMORIN 1.3	Remorin 1.3, remorin group 1 member 3	REMORIN 1.3		3	LOC_Os03g02040.		Os03g0111200 	LOC_Os03g02040.1						
20272	REM1.4	OsREM1.4	REMORIN 1.4	Remorin 1.4, remorin group 1 member 4	REMORIN 1.4	Osrem1.4	2	The homologous remorin of NbREM1.	 Tolerance and resistance - Disease resistance	Os02g0642200 	LOC_Os02g42880.1				GO:0051607 - defense response to virus, GO:0050687 - negative regulation of defense response to virus	TO:0000148 - viral disease resistance	
20273	REM4.2	OsREM4.2	REMORIN 4.2	Remorin 4.2, remorin group 4 member 2	REMORIN 4.2		3			Os03g0808300	LOC_Os03g59360.1						
20274	REM4.3	OsREM4.3	REMORIN 4.3	Remorin 4.3, remorin group 4 member 3	REMORIN 4.3		7			Os07g0208600 	LOC_Os07g10780.1						
20275	REM5.1	OsREM5.1	REMORIN 5.1	Remorin 5.1, remorin group 5 member 1	REMORIN 5.1		2	LOC_Os02g52810.		Os02g0767000	LOC_Os02g52810.2, LOC_Os02g52810.1						
20276	REM5.2	OsREM5.2	REMORIN 5.2	Remorin 5.2, remorin group 5 member 2	REMORIN 5.2		8			Os08g0471800	LOC_Os08g36760.1						
20277	REM5.3	OsREM5.3	REMORIN 5.3	Remorin 5.3, remorin group 5 member 3	REMORIN 5.3		9			Os09g0456100	LOC_Os09g28300.2, LOC_Os09g28300.1						
20278	REM6.1	OsREM6.1	REMORIN 6.1	Remorin 6.1, remorin group 6 member 1	REMORIN 6.1		2			Os02g0116800	LOC_Os02g02500.1						
20279	REM6.2	OsREM6.2	REMORIN 6.2	Remorin 6.2, remorin group 6 member 2	REMORIN 6.2		3			Os03g0120200	LOC_Os03g02840.4, LOC_Os03g02840.3, LOC_Os03g02840.2, LOC_Os03g02840.1						
20280	REM6.3	OsREM6.3	REMORIN 6.3	Remorin 6.3, remorin group 6 member 3	REMORIN 6.3		12			Os12g0613600	LOC_Os12g41940.2, LOC_Os12g41940.1						
20281	REM6.4	OsREM6.4	REMORIN 6.4	Remorin 6.4, remorin group 6 member 4	REMORIN 6.4		11			Os11g0616300	LOC_Os11g40210.1						
20282	REM6.5	OsREM6.5	REMORIN 6.5	Remorin 6.5, remorin group 6 member 5	REMORIN 6.5		2			Os02g0602000	LOC_Os02g39000.1				GO:0005634 - nucleus		
20283	_	OsPTP2, PTP2	_	protein tyrosine phosphatase 2			11	LOC_Os11g07850. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0180200	LOC_Os11g07850.1				GO:0051707 - response to other organism, GO:0004725 - protein tyrosine phosphatase activity, GO:0009628 - response to abiotic stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000112 - disease resistance, TO:0000168 - abiotic stress trait, TO:0000615 - abscisic acid sensitivity	
20284	_	VLN1, OsVLN1, Os VLN1	_	VILLIN1, VILLIN 1			5	LOC_Os05g06110.		Os05g0153000	LOC_Os05g06110.1				GO:0051017 - actin filament bundle formation		
20285	_	VLN3, OsVLN3, Os VLN3	_	VILLIN3, VILLIN 3			6	LOC_Os06g44890.		Os06g0659300	LOC_Os06g44890.1				GO:0007010 - cytoskeleton organization		
20286	_	VLN4, OsVLN4, Os VLN4	_	VILLIN4, VILLIN 4			4	LOC_Os04g51440.		Os04g0604000	LOC_Os04g51440.2, LOC_Os04g51440.1				GO:0007010 - cytoskeleton organization		
20287	_	VLN5, OsVLN5, Os VLN5	_	VILLIN5, VILLIN 5			8	LOC_Os08g14230.		Os08g0240800	LOC_Os08g14230.1				GO:0007010 - cytoskeleton organization		
20288	_	OsPM19L2	_	AWPM-19-like protein 2			7			Os07g0422100 	LOC_Os07g24000.1				GO:0016021 - integral to membrane		
20289	_	OsPM19L3	_	AWPM-19-like protein 3			5	XP_006654338.1 (LOC102710696 [Oryza brachyantha]).							GO:0016021 - integral to membrane		
20290	_	OsPM19L4	_	AWPM-19-like protein 4			7	XP_006658505.1 (LOC102721097 [Oryza brachyantha]).									
20291	_		_	Pyruvate dehydrogenase E1 alpha subunit			6	Q654V6.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0246500 	LOC_Os06g13720.1				GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006096 - glycolysis, GO:0006086 - acetyl-CoA biosynthetic process from pyruvate, GO:0005759 - mitochondrial matrix	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
20292	_	OsAH, AH	_	amidohydrolase			12	LOC_Os12g28270. GO:0080181: lateral root branching.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os12g0468600	LOC_Os12g28270.2, LOC_Os12g28270.1				GO:0044030 - regulation of DNA methylation, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, GO:0009414 - response to water deprivation	TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance	
20293	_	OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S	_	serine/threonin-protein kinase AFC2			12	LOC_Os12g27520. KR107935. BF108323. GO:0080181: lateral root branching. LAMMER Kinase. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1900425: negative regulation of defense response to bacterium.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0460800	LOC_Os12g27520.4, LOC_Os12g27520.3, LOC_Os12g27520.1				GO:0046777 - protein amino acid autophosphorylation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0006397 - mRNA processing, GO:0009414 - response to water deprivation, GO:0043484 - regulation of RNA splicing, GO:0045727 - positive regulation of translation	TO:0002668 - jasmonic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance	
20294	_	OsPOEI19, POEI19	_	Pollen Ole e I allergen and extensin 19			12	LOC_Os12g27520. GO:0080181: lateral root branching.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os12g0472800 	LOC_Os12g28770.1				GO:0009414 - response to water deprivation	TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance	
20295	GDPD	OsGdpD, GdpD	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	Glycerophosphoryl diester phosphodiesterase	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE		12	LOC_Os12g27102. 	 Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0456700	LOC_Os12g27102.3, LOC_Os12g27102.2, LOC_Os12g27102.1				GO:0006629 - lipid metabolic process, GO:0048767 - root hair elongation, GO:0008889 - glycerophosphodiester phosphodiesterase activity, GO:0048653 - anther development	TO:0002665 - root hair length, TO:0000531 - anther length	
20296	_	Rf6	_	fertility restoration-6, RESTORATION OF FERTILITY 6			8	Pentatricopeptide-repeat family protein. HL-CMS restorer.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os08g0110200	LOC_Os08g01870.1				GO:0009555 - pollen development, GO:0005739 - mitochondrion, GO:0006397 - mRNA processing	TO:0000308 - male fertility restoration trait	
20297	_		_	NAD dependent epimerase/dehydratase			7	LOC_Os07g41050. photosynthetic electron transport related gene. 	 Biochemical character	Os07g0601600 	LOC_Os07g41050.1						
20298	_		_	flavonol sulfotransferase			7	LOC_Os07g05460. photosynthetic electron transport related gene. 	 Biochemical character	Os07g0148600 	LOC_Os07g05460.1				GO:0008146 - sulfotransferase activity		
20299	YGL9	OscpSRP43, cpSRP43, PGL3	YELLOW-GREEN LEAF 9	Chloroplast Signal Recognition Particle 43, chloroplast signal recognition particle 43 KD protein, chloroplast signal recognition particle 43 kDa protein, yellow green leaf 9, pale- green leaf 3		ygl9, pgl3	3	LOC_Os03g03990. Q8LSQ2.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Coloration - Others,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os03g0131900	LOC_Os03g03990.1				GO:0009535 - chloroplast thylakoid membrane, GO:0010155 - regulation of proton transport, GO:0010218 - response to far red light, GO:0009658 - chloroplast organization, GO:0009744 - response to sucrose stimulus, GO:0009637 - response to blue light, GO:0019344 - cysteine biosynthetic process, GO:0015979 - photosynthesis, GO:0048573 - photoperiodism, flowering, GO:0005786 - signal recognition particle, endoplasmic reticulum targeting, GO:0016116 - carotenoid metabolic process, GO:0010150 - leaf senescence, GO:0015995 - chlorophyll biosynthetic process, GO:0009507 - chloroplast, GO:0015994 - chlorophyll metabolic process, GO:0009760 - C4 photosynthesis, GO:0009941 - chloroplast envelope, GO:0010114 - response to red light, GO:0046777 - protein amino acid autophosphorylation, GO:0080085 - signal recognition particle, chloroplast targeting, GO:0045038 - protein import into chloroplast thylakoid membrane, GO:0042440 - pigment metabolic process	TO:0000137 - days to heading, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000605 - hydrogen peroxide content, TO:0000432 - temperature response trait, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0020104 - leaf sheath 
20300	_		_	mesocotyl length candidate gene			1			Os01g0392100	LOC_Os01g29740.1				GO:0016021 - integral to membrane		
20301	_		_	mesocotyl length candidate gene, SDA1 domain-containing protein			4			Os04g0630000	LOC_Os04g53770.1				GO:0000055 - ribosomal large subunit export from nucleus, GO:0042273 - ribosomal large subunit biogenesis, GO:0030036 - actin cytoskeleton organization		
20302	_		_	mesocotyl length candidate gene, pentatricopeptide repeat-containing protein			7			Os07g0615000	LOC_Os07g42354.1						
20303	_	OSVDAC6, osvdac6, OsVDAC6, VDAC6	_	voltage-dependent anion channel 6, voltage-dependent anion-selective channel 6			3	LOC_Os03g04460. Q10S27.	 Biochemical character	Os03g0137500 	LOC_Os03g04460.1				GO:0008308 - voltage-gated anion channel activity, GO:0005741 - mitochondrial outer membrane, GO:0005886 - plasma membrane, GO:0015288 - porin activity, GO:0046930 - pore complex		
20304	_	OSVDAC7, osvdac7, OsVDAC7, VDAC7	_	voltage-dependent anion channel 7, voltage-dependent anion-selective channel 7			1	LOC_Os01g16910. 	 Biochemical character	Os01g0276200	LOC_Os01g16910.1				GO:0005741 - mitochondrial outer membrane, GO:0055085 - transmembrane transport		
20305	RLS2	OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70	RAPID LEAF SENESCENCE 2	rapid leaf senescence2, rapid leaf senescence 2, exocyst subunit EXO70 family protein A1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1	rls2, rls2-1, rls2-2	4	LOC_Os04g58880. a key subunit of exocysts. TO:0020109: vascular bundle development trait.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os04g0685600 	LOC_Os04g58880.1				GO:0009531 - secondary cell wall, GO:0016049 - cell growth, GO:0006887 - exocytosis, GO:0005634 - nucleus, GO:0001944 - vasculature development, GO:0016020 - membrane, GO:0000145 - exocyst	TO:0000207 - plant height, TO:0000470 - vascular tissue related trait, TO:0000652 - leaf necrosis, TO:0000145 - internode length	PO:0000034 - vascular system 
20306	TET1	OsTET1	TETRASPANIN 1	tetraspanin 1	TETRASPANIN 1		1	LOC_Os01g74570.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0977100	LOC_Os01g74570.1				GO:0016021 - integral to membrane, GO:0009408 - response to heat, GO:0005886 - plasma membrane, GO:0010438 - cellular response to sulfur starvation, GO:0010150 - leaf senescence, GO:0006995 - cellular response to nitrogen starvation	TO:0000249 - leaf senescence, TO:0000259 - heat tolerance	PO:0025034 - leaf , PO:0009051 - spikelet , PO:0001054 - 4 leaf senescence stage 
20307	TET2	OsTET2	TETRASPANIN 2	tetraspanin 2	TETRASPANIN 2		2	LOC_Os02g12750.	 Tolerance and resistance - Stress tolerance	Os02g0219800	LOC_Os02g12750.1				GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0016036 - cellular response to phosphate starvation, GO:0051365 - cellular response to potassium ion starvation, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0006995 - cellular response to nitrogen starvation, GO:0010438 - cellular response to sulfur starvation	TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress	PO:0025034 - leaf 
20308	TET3	OsTET3	TETRASPANIN 3	tetraspanin 3	TETRASPANIN 3		2	LOC_Os02g49630.	 Tolerance and resistance - Stress tolerance	Os02g0728800	LOC_Os02g49630.1				GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0006970 - response to osmotic stress, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
20309	TET4	OsTET4	TETRASPANIN 4	tetraspanin 4	TETRASPANIN 4		3	LOC_Os03g01012.	 Tolerance and resistance - Stress tolerance	Os03g0100020	LOC_Os03g01012.1				GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0005886 - plasma membrane, GO:0008361 - regulation of cell size, GO:0009506 - plasmodesma, GO:0009554 - megasporogenesis, GO:0009855 - determination of bilateral symmetry, GO:0009926 - auxin polar transport, GO:0009934 - regulation of meristem structural organization, GO:0009944 - polarity specification of adaxial/abaxial axis, GO:0009956 - radial pattern formation, GO:0010014 - meristem initiation, GO:0010015 - root morphogenesis, GO:0010075 - regulation of meristem growth, GO:0010305 - leaf vascular tissue pattern formation, GO:0016021 - integral to membrane, GO:0019344 - cysteine biosynthetic process, GO:0040007 - growth, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
20310	TET5	OsTET5	TETRASPANIN 5	tetraspanin 5	TETRASPANIN 5		3	LOC_Os03g63600.	 Tolerance and resistance - Stress tolerance	Os03g0853000	LOC_Os03g63600.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0009408 - response to heat, GO:0006995 - cellular response to nitrogen starvation, GO:0010438 - cellular response to sulfur starvation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage , PO:0009005 - root 
20311	TET6	OsTET6	TETRASPANIN 6	tetraspanin 6	TETRASPANIN 6		3	LOC_Os03g63620.	 Tolerance and resistance - Stress tolerance	Os03g0853200	LOC_Os03g63620.1				GO:0042542 - response to hydrogen peroxide, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0010438 - cellular response to sulfur starvation, GO:0016021 - integral to membrane, GO:0009507 - chloroplast	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance	PO:0025034 - leaf 
20312	TET7	OsTET7	TETRASPANIN 7	tetraspanin 7	TETRASPANIN 7		5	LOC_Os05g03140.	 Tolerance and resistance - Stress tolerance	Os05g0122800	LOC_Os05g03140.1				GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0006970 - response to osmotic stress, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0002657 - oxidative stress, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
20313	TET8	OsTET8	TETRASPANIN 8	tetraspanin 8	TETRASPANIN 8		5	LOC_Os05g03530.		Os05g0126100	LOC_Os05g03530.3, LOC_Os05g03530.2, LOC_Os05g03530.1				GO:0016021 - integral to membrane		PO:0009005 - root , PO:0025034 - leaf 
20314	TET9	OsTET9	TETRASPANIN 9	tetraspanin 9	TETRASPANIN 9		6	LOC_Os06g37510.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os06g0572400	LOC_Os06g37510.1				GO:0010150 - leaf senescence, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence	PO:0009046 - flower , PO:0009051 - spikelet , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
20315	TET10	OsTET10	TETRASPANIN 10	tetraspanin 10	TETRASPANIN 10		6	LOC_Os06g44310.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os06g0653100	LOC_Os06g44310.1				GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0042542 - response to hydrogen peroxide, GO:0005886 - plasma membrane	TO:0002657 - oxidative stress, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage , PO:0009046 - flower , PO:0009051 - spikelet 
20316	TET11	OsTET11	TETRASPANIN 11	tetraspanin 11	TETRASPANIN 11		8	LOC_Os08g16050.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os08g0260600	LOC_Os08g16050.1				GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0010150 - leaf senescence	TO:0000615 - abscisic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000249 - leaf senescence, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
20317	TET12	OsTET12	TETRASPANIN 12	tetraspanin 12	TETRASPANIN 12		8	LOC_Os08g34460.	 Tolerance and resistance - Stress tolerance	Os08g0443800	LOC_Os08g34460.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0042542 - response to hydrogen peroxide, GO:0009741 - response to brassinosteroid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009408 - response to heat	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity	PO:0025034 - leaf , PO:0009005 - root 
20318	TET14	OsTET14	TETRASPANIN 14	tetraspanin 14	TETRASPANIN 14		10	LOC_Os10g35980.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os10g0503600	LOC_Os10g35980.1				GO:0009408 - response to heat, GO:0005886 - plasma membrane, GO:0042542 - response to hydrogen peroxide, GO:0006970 - response to osmotic stress, GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress	TO:0000095 - osmotic response sensitivity, TO:0000249 - leaf senescence, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
20319	TET15	OsTET15	TETRASPANIN 15	tetraspanin 15	TETRASPANIN 15		12	LOC_Os12g14580.		Os12g0249100	LOC_Os12g14580.1				GO:0016021 - integral to membrane		PO:0025034 - leaf 
20320	RPA2B	RPA2b, OsRPA2b	REPLICATION PROTEIN A 2B	Replication Protein A2b	REPLICATION PROTEIN A 2B		2	Q6H7J5.		Os02g0633400	LOC_Os02g42230.1				GO:0006260 - DNA replication, GO:0006281 - DNA repair, GO:0003677 - DNA binding, GO:0006310 - DNA recombination, GO:0005634 - nucleus		
20321	EXO70A2	OsEXO70A2, OsExo70A2, OrysaA2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A2	exocyst subunit EXO70 family protein A2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A2		4	LOC_Os04g58870. 		Os04g0685500 	LOC_Os04g58870.3, LOC_Os04g58870.2, LOC_Os04g58870.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20322	EXO70A3	OsEXO70A3, OsExo70A3, OrysaA3_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3	exocyst subunit EXO70 family protein A3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3		11	LOC_Os11g05880. 		Os11g0157400	LOC_Os11g05880.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20323	EXO70A4	OsEXO70A4, OsExo70A4, OrysaA4_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A4	exocyst subunit EXO70 family protein A4	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A4		12	LOC_Os12g06270. 		Os12g0159700	LOC_Os12g06270.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20324	EXO70B1	OsEXO70B1, OsExo70B1, OrysaB1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1	exocyst subunit EXO70 family protein B1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1		1	LOC_Os01g61180. 		Os01g0827500 	LOC_Os01g61180.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20325	EXO70B2	OsEXO70B2, OsExo70B2, OrysaB2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B2	exocyst subunit EXO70 family protein B2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B2		1	LOC_Os01g61190. 		Os01g0827600 	LOC_Os01g61190.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20326	EXO70B3	OsEXO70B3, OsExo70B3, OrysaB3_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B3	exocyst subunit EXO70 family protein B3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B3		5	LOC_Os05g39610. 		Os05g0473500 	LOC_Os05g39610.2, LOC_Os05g39610.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20327	EXO70C1	OsEXO70C1, OsExo70C1, OrysaC1_Exo70, OrysaE1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1	exocyst subunit EXO70 family protein C1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1		12	LOC_Os12g06840. OrysaE1_Exo70 (Os12g0165500 = obsolete data in IRGSP Ver1.0, C7JA30_ORYSJ = Os12g0165600) in Cvrckova et al. 2012.		Os12g0165600 	LOC_Os12g06840.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20328	EXO70D1	OsEXO70D1, OsExo70D1, OrysaD1_Exo70	_	exocyst subunit EXO70 family protein D1			9	LOC_Os09g26820. 		Os09g0439600 	LOC_Os09g26820.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20329	EXO70D2	OsEXO70D2, OsExo70D2, OrysaD2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2	exocyst subunit EXO70 family protein D2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2		8	LOC_Os08g35470. 		Os08g0455700 	LOC_Os08g35470.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20330	EXO70E1	OsEXO70E1, OsExo70E1	_	exocyst subunit EXO70 family protein E1			1	LOC_Os01g55810 (not found in MSU Rice Genome Annotation Project Release 7 data) in Synek et al. 2006.							GO:0006887 - exocytosis, GO:0000145 - exocyst		
20331	EXO70F1	OsEXO70F1, OsExo70F1, OrysaF1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F1	exocyst subunit EXO70 family protein F1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F1		1	LOC_Os01g69230.		Os01g0921400	LOC_Os01g69230.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20332	EXO70F2	OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F2	exocyst subunit EXO70 family protein F2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F2		2	LOC_Os02g30230.	 Tolerance and resistance - Disease resistance	Os02g0505400	LOC_Os02g30230.3, LOC_Os02g30230.2, LOC_Os02g30230.1				GO:0009620 - response to fungus, GO:0000145 - exocyst, GO:0006887 - exocytosis	TO:0000074 - blast disease	
20333	EXO70F3	OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F3	exocyst subunit EXO70 family protein F3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F3		4	LOC_Os04g31330.	 Tolerance and resistance - Disease resistance	Os04g0382200	LOC_Os04g31330.1				GO:0006887 - exocytosis, GO:0000145 - exocyst, GO:0009620 - response to fungus	TO:0000074 - blast disease	
20334	EXO70F4	OsEXO70F4, OsExo70F4, OrysaF4_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F4	exocyst subunit EXO70 family protein F4	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F4		8	LOC_Os08g41820.		Os08g0530300	LOC_Os08g41820.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20335	EXO70F5	OsEXO70F5, OsExo70F5, OrysaF5_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F5	exocyst subunit EXO70 family protein F5	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F5		6	LOC_Os06g14450.		Os06g0255900	LOC_Os06g14450.3, LOC_Os06g14450.2, LOC_Os06g14450.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20336	EXO70G1	OsEXO70G1, OsExo70G1, OrysaG1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G1	exocyst subunit EXO70 family protein G1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G1		2	LOC_Os02g05620.		Os02g0149700 	LOC_Os02g05620.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20337	EXO70G2	OsEXO70G2, OsExo70G2, OrysaG2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G2	exocyst subunit EXO70 family protein G2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G2		6	LOC_Os06g48330.		Os06g0698600	LOC_Os06g48330.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20338	EXO70H1	OsEXO70H1a, EXO70H1a, OsExo70H1a, OsEXO70H1b, EXO70H1b, OrysaH1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H1	exocyst subunit EXO70 family protein H1a, exocyst subunit EXO70 family protein H1b	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H1		11	LOC_Os11g42989. LOC_Os11g43049.		Os11g0649900 	LOC_Os11g43049.1, LOC_Os11g42989.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20339	EXO70H2	OsEXO70H2, OsExo70H2, OrysaH2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2	exocyst subunit EXO70 family protein H2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2		3	LOC_Os03g33520.		Os03g0448200 	LOC_Os03g33520.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20340	EXO70H3A	OsEXO70H3a, EXO70H3a, OrysaH3a_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3A	exocyst subunit EXO70 family protein H3a	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3A		12	LOC_Os12g01040.		Os12g0100700 	LOC_Os12g01040.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20341	EXO70H3B	OsEXO70H3b, EXO70H3b, OsExo70H3b, OrysaH3b_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3B	exocyst subunit EXO70 family protein H3b	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3B		11	LOC_Os11g01050.		Os11g0100800 	LOC_Os11g01050.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20342	EXO70I1	OsEXO70I1, OsExo70I1, OrysaI1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN I1	exocyst subunit EXO70 family protein I1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN I1		8	LOC_Os08g40840.		Os08g0519900	LOC_Os08g40840.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20343	EXO70FX1	OsEXO70FX1, OsExo70FX1, OrysaFX1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX1	exocyst subunit EXO70 family protein FX1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX1		5	LOC_Os05g30700.		Os05g0369900 	LOC_Os05g30700.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20344	EXO70FX2	OsEXO70FX2, OsExo70FX2, OrysaFX2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX2	exocyst subunit EXO70 family protein FX2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX2		5	LOC_Os05g30640.		Os05g0369300 	LOC_Os05g30640.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20345	EXO70FX3	OsEXO70FX3, OsExo70FX3, OrysaFX3_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX3	exocyst subunit EXO70 family protein FX3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX3		5	LOC_Os05g30660.		Os05g0369500	LOC_Os05g30660.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20346	EXO70FX4	OsEXO70FX4, OsExo70FX4, OrysaFX4_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX4	exocyst subunit EXO70 family protein FX4	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX4		8	LOC_Os08g13570.		Os08g0232700	LOC_Os08g13570.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20347	EXO70FX5	OsEXO70FX5, OsExo70FX5, OrysaFX5_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX5	exocyst subunit EXO70 family protein FX5	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX5		9	LOC_Os09g17810.		Os09g0347300	LOC_Os09g17810.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20348	EXO70FX6	OsEXO70FX6, OsExo70FX6, OrysaFX6_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX6	exocyst subunit EXO70 family protein FX6	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX6		2	LOC_Os02g36619.		Os02g0575900	LOC_Os02g36619.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20349	EXO70FX7	OsEXO70FX7, OsExo70FX7, OrysaFX7_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX7	exocyst subunit EXO70 family protein FX7	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX7		1	LOC_Os01g28600.		Os01g0383100	LOC_Os01g28600.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20350	EXO70FX8	OsEXO70FX8, OsExo70FX8, OrysaFX8_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX8	exocyst subunit EXO70 family protein FX8	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX8		11	LOC_Os11g36400.		Os11g0572200 	LOC_Os11g36400.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20351	EXO70FX9	OsEXO70FX9, OsExo70FX9, OrysaFX9_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX9	exocyst subunit EXO70 family protein FX9	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX9		6	LOC_Os06g08460.		Os06g0183600 	LOC_Os06g08460.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20352	EXO70FX10	OsEXO70FX10, OsExo70FX10, OrysaFX10_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX10	exocyst subunit EXO70 family protein FX10	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX10		7	LOC_Os07g10910.		Os07g0210000 	LOC_Os07g10910.2, LOC_Os07g10910.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20353	EXO70FX11	OsEXO70FX11, OsExo70FX11, OrysaFX11_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX11	exocyst subunit EXO70 family protein FX11	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX11		7	LOC_Os07g10940. Os07g0210300 in Cvrckova et al. 2012.		Os07g0210300/Os07g0210675  					GO:0006887 - exocytosis, GO:0000145 - exocyst		
20354	EXO70FX12	OsEXO70FX12, OsExo70FX12, OrysaFX12_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX12	exocyst subunit EXO70 family protein FX12	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX12		7	LOC_Os07g10960.		Os07g0210900	LOC_Os07g10960.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20355	EXO70FX13	OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX13	exocyst subunit EXO70 family protein FX13	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX13		4	LOC_Os04g02070.		Os04g0111500 	LOC_Os04g02070.4, LOC_Os04g02070.3, LOC_Os04g02070.2, LOC_Os04g02070.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20356	EXO70FX14	OsEXO70FX14, OsExo70FX14, OrysaFX14_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX14	exocyst subunit EXO70 family protein FX14	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX14		1	LOC_Os01g67820.		Os01g0905300 	LOC_Os01g67820.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20357	EXO70FX15	OsEXO70FX15, OsExo70FX15, OrysaFX15_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX15	exocyst subunit EXO70 family protein FX15	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX15		1	LOC_Os01g67810.		Os01g0905200 	LOC_Os01g67810.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20358	EXO70FX16	OsEXO70FX16, OsExo70FX16, OrysaFX16_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX16	exocyst subunit EXO70 family protein FX16	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX16		11	LOC_Os01g69280 (not found in MSU Rice Genome Annotation Project Release 7 data) in Synek et al. 2006. Os11g0650100 in Cvrckova et al. 2012.		Os11g0650100					GO:0000145 - exocyst, GO:0006887 - exocytosis		
20359	_	orfH79, ORFH79	_	cytotoxic protein ORFH79, mitochondrial chimeric gene orfH79	_		Mt	orfH79 is a a chimeric mitochondrial gene located downstream of atp6 gene.	 Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance						GO:0051881 - regulation of mitochondrial membrane potential, GO:0005739 - mitochondrion, GO:0006979 - response to oxidative stress, GO:0000302 - response to reactive oxygen species, GO:0006091 - generation of precursor metabolites and energy, GO:0009555 - pollen development, GO:0022900 - electron transport chain, GO:0048364 - root development	TO:0000227 - root length, TO:0000218 - pollen abortion type, TO:0000053 - pollen sterility, TO:0000350 - cms-hl type, TO:0002657 - oxidative stress	PO:0001031 - 4 root elongation stage , PO:0001007 - pollen development stage 
20360	TS2		TASSELSEED-2	TASSELSEED2-like protein, sex determination protein TASSELSEED-2, TS2 homolog, a homolog of maize TASSELSEED-2	TASSELSEED-2		7	LOC_Os07g46920. 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Os07g46920				GO:0009695 - jasmonic acid biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0007530 - sex determination, GO:0009556 - microsporogenesis	TO:0000580 - cytoplasmic male sterility, TO:0000350 - cms-hl type, TO:0002668 - jasmonic acid content	PO:0001007 - pollen development stage 
20361	_		_	a protein of unknown function			5	LOC_Os05g51540. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0593200 	LOC_Os05g51540.1				GO:0016021 - integral to membrane	TO:0000350 - cms-hl type	
20362	_		_	Electron transfer flavoprotein subunit			4	LOC_Os04g10400. Q7F9U3.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0182800 	LOC_Os04g10400.1				GO:0055114 - oxidation reduction, GO:0006552 - leucine catabolic process, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0005759 - mitochondrial matrix, GO:0009055 - electron carrier activity, GO:0015996 - chlorophyll catabolic process	TO:0000350 - cms-hl type	
20363	_	P61	_	a subunit of the mitochondrial electron transport chain (ETC) complex III			7	LOC_Os07g48244.		Os07g0680300 	LOC_Os07g48244.1				GO:0016021 - integral to membrane		
20364	_		_	CDKA;1 homolog			3	LOC_Os03g01850.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0108800 	LOC_Os03g01850.2, LOC_Os03g01850.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000350 - cms-hl type	
20365	_	Pii	_	Pyricularia oryzae resistance-i, Magnaporthe grisea resistance-I Blast resistance I			9	AB820896 (Oryza sativa Japonica cv. Hitomebore). Nipponbare is known to lack Pii. Scrutiny of Os09g0327600 from Nipponbare showed that this gene encodes a truncated R-protein that is likely to be nonfunctional. The Nipponbare Os09g0327600 gene seems to have lost R-gene function by truncation of the region corresponding to the C-terminus of the protein.	 Tolerance and resistance - Disease resistance	Os09g0327600 	LOC_Os09g15840.1				GO:0009620 - response to fungus	TO:0000074 - blast disease	
20366	EXO70C2	OsEXO70C2, OsExo70C2, OrysaC2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C2	exocyst subunit EXO70 family protein C2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C2		11	LOC_Os11g06700.		Os11g0167600 	LOC_Os11g06700.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20367	EXO70X1	OsEXO70X1, OsExo70X1, OrysaX1_Exo70, OsEXO70E1, OsExo70E1, EXO70E1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X1	exocyst subunit EXO70 family protein X1, exocyst subunit EXO70 family protein E1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X1		1	LOC_Os01g55799. a rice homolog of AtEXO70E2. OsEXO70E1 in Guo et al. 2018.	 Tolerance and resistance - Insect resistance	Os01g0763750	LOC_Os01g55799.3, LOC_Os01g55799.2, LOC_Os01g55799.1				GO:0000145 - exocyst, GO:0002213 - defense response to insect, GO:0006887 - exocytosis	TO:0000424 - brown planthopper resistance	
20368	EXO70X2	OsEXO70X2, OsExo70X2, OrysaX2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X2	exocyst subunit EXO70 family protein X2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X2		10	LOC_Os10g33850. pseudogene in Synek et al. 2006.			LOC_Os10g33850				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20369	EXO70X3	OsEXO70X3, OsExo70X3, OrysaX3_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X3	exocyst subunit EXO70 family protein X3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X3		7	LOC_Os07g10970. pseudogene in Synek et al. 2006.		Os07g0211000 	LOC_Os07g10970.2, LOC_Os07g10970.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20370	EXO70X4	OsEXO70X4, OsExo70X4, OrysaX4_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X4	exocyst subunit EXO70 family protein X4	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X4		7	LOC_Os07g10920. pseudogene in Synek et al. 2006.		Os07g0210100	LOC_Os07g10920.4, LOC_Os07g10920.3, LOC_Os07g10920.2, LOC_Os07g10920.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20371	EXO70X5	OsEXO70X5, OsExo70X5, OrysaX5_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X5	exocyst subunit EXO70 family protein X5	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X5		1	LOC_Os01g56210. pseudogene in Synek et al. 2006.		Os01g0768032	LOC_Os01g56210.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20372	EXO70X6	OsEXO70X6, OsExo70X6, OrysaX6_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X6	exocyst subunit EXO70 family protein X6	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X6		5	LOC_Os05g30620. pseudogene in Synek et al. 2006.		Os05g0369100 	LOC_Os05g30620.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20373	EXO70X7	OsEXO70X7, OsExo70X7, OrysaX7_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X7	exocyst subunit EXO70 family protein X7	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X7		5	LOC_Os05g30680. pseudogene in Synek et al. 2006.		Os05g0369700 	LOC_Os05g30680.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20374	_	OsRMT1, RMT1	_	RING finger protein with microtubule-targeting domain 1			4	LOC_Os04g51400.	 Tolerance and resistance - Stress tolerance	Os04g0603200 	LOC_Os04g51400.5, LOC_Os04g51400.3, LOC_Os04g51400.2, LOC_Os04g51400.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005874 - microtubule, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
20375	_	OsDH1, DH1	_	dehydrogenase 1			8	LOC_Os08g43190.	 Biochemical character	Os08g0545200 	LOC_Os08g43190.2, LOC_Os08g43190.1				GO:0008270 - zinc ion binding, GO:0005737 - cytoplasm, GO:0009506 - plasmodesma, GO:0003939 - L-iditol 2-dehydrogenase activity		
20376	_	OsPB1, PB1	_	PB1 domain-containing protein			11	LOC_Os11g25780.		Os11g0444700	LOC_Os11g25780.1						
20377	_	UGT	_	UDP-glycosyltransferase, UDP-glycosyl transferase			6		 Biochemical character,  Coloration - Anthocyanin,  Seed	Os06g0192100	LOC_Os06g09240.1				GO:0009718 - anthocyanin biosynthetic process, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0000707 - pericarp color	
20378	F3H1	OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H	FLAVANONE 3-HYDROXYLASE 1	Flavanone 3-hydroxylase 1	FLAVANONE 3-HYDROXYLASE 1		4	CI252891. LOC_Os04g56700. AL606999 (OSJNBa0084K01.10). 	 Biochemical character,  Coloration - Anthocyanin,  Seed	Os04g0662600	LOC_Os04g56700.1				GO:0010224 - response to UV-B, GO:0016491 - oxidoreductase activity, GO:0009718 - anthocyanin biosynthetic process, GO:0045486 - naringenin 3-dioxygenase activity, GO:0051555 - flavonol biosynthetic process	TO:0000707 - pericarp color	
20379	F3H2	OsF3H-2, F3H-2, OsF3H2	FLAVANONE 3-HYDROXYLASE 2	Flavanone 3-hydroxylase 2	FLAVANONE 3-HYDROXYLASE 2		10		 Biochemical character,  Coloration - Anthocyanin	Os10g0536400	LOC_Os10g39140.4, LOC_Os10g39140.3, LOC_Os10g39140.2, LOC_Os10g39140.1				GO:0051555 - flavonol biosynthetic process, GO:0009718 - anthocyanin biosynthetic process		
20380	F3H3	OsF3H-3, F3H-3, OsF3H3	FLAVANONE 3-HYDROXYLASE 3	Flavanone 3-hydroxylase 3	FLAVANONE 3-HYDROXYLASE 3		4		 Biochemical character,  Coloration - Anthocyanin	Os04g0667200	LOC_Os04g57160.2, LOC_Os04g57160.1				GO:0016491 - oxidoreductase activity, GO:0009718 - anthocyanin biosynthetic process, GO:0051555 - flavonol biosynthetic process, GO:0046872 - metal ion binding		
20382	_	OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, PKS8	_	chalcone synthase 2, polyketide synthase 8			7	Q8H4L3. LOC_Os07g11440.	 Biochemical character,  Coloration - Anthocyanin	Os07g0214900	LOC_Os07g11440.1				GO:0016210 - naringenin-chalcone synthase activity, GO:0009813 - flavonoid biosynthetic process		
20383	_	Kala3	_	Key gene for black coloration by anthocyanin accumulation on chromosome 3			3	Kala3 was mapped between RM15008 and RM3400 on chromosome 3 and it may be OsMYB3 (Os03g0410000) (Maeda et al. 2014).	 Coloration - Anthocyanin,  Seed						GO:0031542 - positive regulation of anthocyanin biosynthetic process	TO:0000071 - anthocyanin content, TO:0000707 - pericarp color	
20384	_	Kala1	_	Key gene for black coloration by anthocyanin accumulation on chromosome 1			1	Kala3 was mapped between RM7405 and RM7419 on chromosome 1, and it appears likely that Kala1 is Rd/DFR (Os01g0633500) (Maeda et al. 2014).	 Coloration - Anthocyanin,  Seed						GO:0031542 - positive regulation of anthocyanin biosynthetic process	TO:0000071 - anthocyanin content, TO:0000707 - pericarp color	
20385	_	OsLTPL36, LTPL36	_				3	non-specific lipid transfer protein. LOC_Os03g25350.	 Biochemical character,  Seed,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Seed - Physiological traits - Taste,  Character as QTL - Yield and productivity	Os03g0369100 	LOC_Os03g25350.1				GO:0009845 - seed germination, GO:0009790 - embryonic development, GO:0048316 - seed development	TO:0000180 - spikelet fertility, TO:0000162 - seed quality, TO:0000653 - seed development trait, TO:0000280 - seedling vigor, TO:0000620 - embryo development trait, TO:0000382 - 1000-seed weight, TO:0000266 - chalky endosperm, TO:0000604 - fat and essential oil content	PO:0007631 - plant embryo stage , PO:0007057 - 0 seed germination stage , PO:0009088 - seed coat , PO:0005360 - aleurone layer , PO:0001170 - seed development stage 
20386	_	OsRPK2, RPK2	_	receptor protein kinase 2			9	LOC_Os09g19390. Os09g0358600 in RAP3 (RapDB build 5).	 Tolerance and resistance - Stress tolerance		LOC_Os09g19390				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20387	_	OsRPK3, RPK3	_	receptor protein kinase 3			9	LOC_Os09g19400.	 Tolerance and resistance - Stress tolerance	Os09g0358700 	LOC_Os09g19400.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20388	_	OsmtATPS1, mtATPS1	_	mitochondrial proton-transporting ATP synthase 1			4	LOC_Os04g02670.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0117100 	LOC_Os04g02670.1				GO:0009414 - response to water deprivation, GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0016021 - integral to membrane, GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity	TO:0000276 - drought tolerance	
20389	_	OsTPP1, TPP1	_	transposon gene 1			8	LOC_Os08g20486. Os08g0299800 in  RAP2 (RapDB build4).	 Tolerance and resistance - Stress tolerance		LOC_Os08g20486				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20390	_	OsTPP2, TPP2	_	transposon gene 2			10	LOC_Os10g20280. Os10g0343600 in  RAP2 (RapDB build4).	 Tolerance and resistance - Stress tolerance		LOC_Os10g20280				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20391	_	OsRTPP1, RTPP1	_	retrotransposon gene 1			11	LOC_Os11g02220.	 Tolerance and resistance - Stress tolerance	Os11g0113500 	LOC_Os11g02220.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20392	_	OsRPP14.1, RPP14.1	_	RPP14-family protein 1			5	LOC_Os05g18780.	 Tolerance and resistance - Stress tolerance	Os05g0270500 	LOC_Os05g18780.1				GO:0004526 - ribonuclease P activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20393	_	OsSLPP1, SLPP1	_	subtilisin-like protease precursor 1			4	LOC_Os04g02970.	 Tolerance and resistance - Stress tolerance	Os04g0120100 	LOC_Os04g02970.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20394	PGK1	OsPGK1	PHOSPHOGLYCERATE KINASE 1	Phosphoglycerate kinase 1, Phosphoglycerate kinase-1	PHOSPHOGLYCERATE KINASE 1		1	LOC_Os01g58610.	 Biochemical character	Os01g0800266 	LOC_Os01g58610.1				GO:0004618 - phosphoglycerate kinase activity, GO:0006096 - glycolysis, GO:0009507 - chloroplast		
20395	PGK3	OsPGK3, OsPGK3a, OsPGK3b, OsPGK3c	PHOSPHOGLYCERATE KINASE 3	Phosphoglycerate kinase 3, Phosphoglycerate kinase-3	PHOSPHOGLYCERATE KINASE 3		5	LOC_Os05g41640.	 Biochemical character	Os05g0496200 	LOC_Os05g41640.3, LOC_Os05g41640.2, LOC_Os05g41640.1				GO:0009507 - chloroplast, GO:0004618 - phosphoglycerate kinase activity, GO:0006096 - glycolysis		
20396	PIMT1	OsPIMT1, OsPIMT1'	PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 1	Protein repair L-isoaspartyl methyltransferase 1, PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE  1	PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 1		8	KM527502. LOC_Os08g44280. GO:2000377 regulation of reactive oxygen species metabolic process.	 Biochemical character,  Seed - Physiological traits - Longevity	Os08g0557000	LOC_Os08g44280.2, LOC_Os08g44280.1				GO:0009845 - seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, GO:0048316 - seed development, GO:0030091 - protein repair, GO:0005829 - cytosol	TO:0000653 - seed development trait, TO:0000615 - abscisic acid sensitivity, TO:0000435 - seed longevity, TO:0000430 - germination rate, TO:0000345 - seed viability	PO:0007057 - 0 seed germination stage , PO:0009009 - plant embryo , PO:0001170 - seed development stage , PO:0009089 - endosperm 
20397	PIMT2	OsPIMT2, OsPIMT2'-1, OsPIMT2'-2, deltaOsPIMT2	PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 2	Protein repair L-isoaspartyl methyltransferase 2, PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE 2	PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 2		8	KM675736. LOC_Os04g40540. GO:2000377 regulation of reactive oxygen species metabolic process.	 Biochemical character,  Seed - Physiological traits - Longevity	Os04g0481400	LOC_Os04g40540.3, LOC_Os04g40540.2, LOC_Os04g40540.1				GO:0030091 - protein repair, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development	TO:0000615 - abscisic acid sensitivity, TO:0000435 - seed longevity, TO:0000653 - seed development trait, TO:0000345 - seed viability	PO:0009009 - plant embryo , PO:0007057 - 0 seed germination stage , PO:0025034 - leaf , PO:0001170 - seed development stage 
20398	JMT1	OsJMT1	JASMONIC ACID CARBOXYL METHYLTRANSFERASE 1	Jasmonic acid carboxyl methyltransferase 1	JASMONIC ACID CARBOXYL METHYLTRANSFERASE 1		5	LOC_Os05g01140. AK240953.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance,  Character as QTL - Yield and productivity	Os05g0102000	LOC_Os05g01140.1				GO:0009723 - response to ethylene stimulus, GO:0009695 - jasmonic acid biosynthetic process, GO:0042538 - hyperosmotic salinity response, GO:0010363 - regulation of plant-type hypersensitive response, GO:0009620 - response to fungus, GO:0006612 - protein targeting to membrane, GO:0008168 - methyltransferase activity, GO:0009414 - response to water deprivation, GO:0002213 - defense response to insect, GO:0009738 - abscisic acid mediated signaling, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000357 - growth and development trait, TO:0000396 - grain yield, TO:0000371 - yield trait, TO:0000207 - plant height, TO:0002668 - jasmonic acid content, TO:0000424 - brown planthopper resistance	
20399	ALAAT2	OsAlaAT2, AlaAT2	ALANINE AMINOTRANSFERASE 2	Alanine transaminase 2, alanine-aminotransferase2	ALANINE AMINOTRANSFERASE 2		3	LOC_Os03g08530. 	 Biochemical character	Os03g0183600 	LOC_Os03g08530.1						
20400	ALAAT3	OsAlaAT3, AlaAT3	ALANINE AMINOTRANSFERASE 3	Alanine transaminase 3, alanine-aminotransferase3	ALANINE AMINOTRANSFERASE 3		7	LOC_Os07g42600. 	 Biochemical character	Os07g0617800 	LOC_Os07g42600.1				GO:0030170 - pyridoxal phosphate binding, GO:0009058 - biosynthetic process, GO:0003824 - catalytic activity		
20401	ALAAT4	OsAlaAT4, AlaAT4	ALANINE AMINOTRANSFERASE 4	Alanine transaminase 4, alanine-aminotransferase4	ALANINE AMINOTRANSFERASE 4		10	LOC_Os10g25140. 	 Biochemical character	Os10g0390600	LOC_Os10g25140.1				GO:0030170 - pyridoxal phosphate binding, GO:0009058 - biosynthetic process, GO:0003824 - catalytic activity		
20402	SLAC1	OsSLAC1	SLOW ANION CHANNEL 1	S-type anion channel 1, slow anion channel 1	SLOW ANION CHANNEL 1	slac1	4	rice ortholog of AtOST1. a nitrate-selective anion channel. a guard cell anion channel protein. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0574700	LOC_Os04g48530.1				GO:0016021 - integral to membrane, GO:0010374 - stomatal complex development, GO:0010193 - response to ozone, GO:0010118 - stomatal movement, GO:0010109 - regulation of photosynthesis, GO:0010037 - response to carbon dioxide, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009270 - response to humidity, GO:0006821 - chloride transport, GO:0006863 - purine transport, GO:0006873 - cellular ion homeostasis, GO:0008308 - voltage-gated anion channel activity, GO:0050891 - multicellular organismal water homeostasis, GO:0015711 - organic anion transport	TO:0000522 - stomatal conductance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
20403	_	HT1	_				6	rice orthologue gene of HT1. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait. 	 Tolerance and resistance - Stress tolerance	Os06g0636600 	LOC_Os06g43030.1				GO:0010037 - response to carbon dioxide, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010374 - stomatal complex development, GO:0010118 - stomatal movement	TO:0000522 - stomatal conductance	
20404	_	STOMAGEN, OsEPFL9, EPFL9	_	Epidermal Patterning Factor like-9			1	rice orthologue gene of STOMAGEN. A. thaliana EPFL9  orthologue in rice. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait. GO:2000123: positive regulation of stomatal complex development.		Os01g0914400 	LOC_Os01g68598.2, LOC_Os01g68598.1				GO:0007267 - cell-cell signaling, GO:0010052 - guard cell differentiation, GO:0010374 - stomatal complex development, GO:0016556 - mRNA modification, GO:0008544 - epidermis development, GO:0010375 - stomatal complex patterning	TO:0000566 - stomatal frequency	
20405	_	OscZOG1, cZOG1	_	zeatin O-glucosyltransferase 1, cis-zeatin O-glucosyltransferase 1	_		4	LOC_Os04g20330.	 Biochemical character,  Vegetative organ - Root,  Character as QTL - Yield and productivity	Os04g0271700 	LOC_Os04g20330.1				GO:0048527 - lateral root development, GO:0048367 - shoot development, GO:0048364 - root development, GO:0033399 - cis-zeatin metabolic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0000050 - inflorescence branching, TO:0000656 - root development trait, TO:0000654 - shoot development trait, TO:0001012 - lateral root length, TO:0001013 - lateral root number, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000447 - filled grain number, TO:0000391 - seed size, TO:0000590 - grain weight, TO:0000396 - grain yield	PO:0006085 - root meristem , PO:0007520 - root development stage , PO:0007089 - stem elongation stage , PO:0006079 - shoot meristem 
20406	CZOGT1	OscZOGT1, cZOGT1	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 1	cis-zeatin O-glucosyltransferase 1, cZ-O-glucosyltransferase 1	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 1		4		 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Root	Os04g0556500	LOC_Os04g46980.1				GO:0010150 - leaf senescence, GO:0048364 - root development, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0033399 - cis-zeatin metabolic process, GO:0048527 - lateral root development, GO:0048367 - shoot development	TO:0000249 - leaf senescence, TO:0000654 - shoot development trait, TO:0000077 - shoot anatomy and morphology trait, TO:0000656 - root development trait, TO:0000495 - chlorophyll content, TO:0002685 - crown root number	PO:0007520 - root development stage , PO:0007112 - 1 main shoot growth stage 
20407	CZOGT2	OscZOGT2, cZOGT2	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 2	cis-zeatin O-glucosyltransferase 2, cZ-O-glucosyltransferase 2	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 2		4		 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Root	Os04g0556600	LOC_Os04g46990.1				GO:0033399 - cis-zeatin metabolic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0010150 - leaf senescence, GO:0048527 - lateral root development, GO:0048367 - shoot development, GO:0048364 - root development	TO:0002685 - crown root number, TO:0000656 - root development trait, TO:0000077 - shoot anatomy and morphology trait, TO:0000654 - shoot development trait, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content	PO:0007520 - root development stage , PO:0007112 - 1 main shoot growth stage 
20408	CZOGT3	OscZOGT3, cZOGT3	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 3	cis-zeatin O-glucosyltransferase 3, cZ-O-glucosyltransferase 3	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 3		4		 Biochemical character	Os04g0565400	LOC_Os04g47770.1				GO:0008194 - UDP-glycosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0043231 - intracellular membrane-bounded organelle		
20409	_	OsMTL1, MTL1	_	METALLOTHIONEIN-LIKE PROTEIN 1			12		 Vegetative organ - Root	Os12g0568350							PO:0009005 - root 
20410	_	OsGRP7, GRP7	_	GLYCINE-RICH PROTEIN 7			10		 Vegetative organ - Root	Os10g0453900	LOC_Os10g31640.1						PO:0009005 - root 
20411	_	OsRSP3, RSP3	_	root-specific unknown protein 3			2		 Vegetative organ - Root	Os02g0584200	LOC_Os02g37260.1						PO:0009005 - root 
20412	_	40SRPS	_	40S ribosomal protein			7	LOC_Os07g42450.		Os07g0616600	LOC_Os07g42450.1				GO:0006412 - translation, GO:0000028 - ribosomal small subunit assembly, GO:0022627 - cytosolic small ribosomal subunit, GO:0003735 - structural constituent of ribosome		
20413	_	OsXA21-C9, XA21-C9	_	OsXA21-like gene			9			Os09g0423000					GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
20414	_	ZRP4	_	O-methyltransferase ZRP4			5	one of the two candidate genes for qCTR5 (QTL for spikelet fertility at low temperature on chromosomes 5).	 Biochemical character	Os05g0515600	LOC_Os05g43940.1				GO:0008171 - O-methyltransferase activity		
20415	_		_	Beta-1, 3-glucanase-like protein			5	one of the two candidate genes for qCTR5 (QTL for spikelet fertility at low temperature on chromosomes 5).	 Biochemical character	Os05g0535100	LOC_Os05g45860.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
20416	_	qCTR12	_	conserved hypothetical protein			12	the candidate gene for qCTR12 (QTL for spikelet fertility at low temperature on chromosomes 12).		Os12g0550600					GO:0016021 - integral to membrane		
20417	_	OsTMEM18, TMEM18	_	Transmembrane Protein 18, AtTMEM18-homologous protein			5			Os05g0432500	LOC_Os05g35720.1				GO:0016021 - integral to membrane		
20418	GA20OX7	OsGA20ox7, ga20ox7, 2-ODD4, Os2-ODD4, 2ODD4, Os2ODD4	GIBBERELLIN 20-OXIDASE 7	rice GA 20-oxidase7, GA 20-oxidase 7, gibberellin C-20 oxidase 7, Gibberellin-20 oxidase 7, 2-oxoglutarate-dependent dioxygenase 4	GIBBERELLIN 20-OXIDASE 7		8	LOC_Os08g44590.	 Biochemical character	Os08g0560000 	LOC_Os08g44590.1				GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding, GO:0009686 - gibberellin biosynthetic process	TO:0002675 - gibberellic acid content	
20419	_		_	ATR homolog			6	LOC_Os06g50910. Q5Z987. Phosphatidylinositol kinase and FAT containing domain protein. an OsAM1-responsive rice meiotic gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os06g0724700 	LOC_Os06g50910.3, LOC_Os06g50910.2, LOC_Os06g50910.1				GO:0005524 - ATP binding, GO:0007049 - cell cycle, GO:0007126 - meiosis, GO:0016301 - kinase activity, GO:0000724 - double-strand break repair via homologous recombination, GO:0004674 - protein serine/threonine kinase activity, GO:0005634 - nucleus		
20420	_		_	ATM homolog			1	LOC_Os01g01689. phosphatidylinositol 3- and 4-kinase family protein. an OsAM1-responsive rice meiotic gene. GO:0090399: replicative senescence.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0106700/Os01g0106750 					GO:0004674 - protein serine/threonine kinase activity, GO:0007126 - meiosis, GO:0005524 - ATP binding, GO:0016301 - kinase activity, GO:0010212 - response to ionizing radiation, GO:0000077 - DNA damage checkpoint, GO:0000723 - telomere maintenance, GO:0000724 - double-strand break repair via homologous recombination, GO:0016572 - histone phosphorylation		
20421	_		_	RMI1 homolog			4	LOC_Os04g32090. Q7XRV0. an OsAM1-responsive rice meiotic gene. 	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0391000 	LOC_Os04g32090.1				GO:0048453 - sepal formation, GO:0048451 - petal formation, GO:0000166 - nucleotide binding, GO:0007126 - meiosis, GO:0000724 - double-strand break repair via homologous recombination		
20422	_		_	MPA1 homolog			8	LOC_Os08g44860. B7EA73. aminopeptidase. an OsAM1-responsive rice meiotic gene. 	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os08g0562700	LOC_Os08g44860.8, LOC_Os08g44860.7, LOC_Os08g44860.6, LOC_Os08g44860.5, LOC_Os08g44860.4, LOC_Os08g44860.3, LOC_Os08g44860.2, LOC_Os08g44860.1				GO:0008270 - zinc ion binding, GO:0004177 - aminopeptidase activity, GO:0007126 - meiosis, GO:0008237 - metallopeptidase activity		
20423	_	sudA	_	SMC3 homolog, chromosome segregation protein sudA			2	LOC_Os02g04080. an OsAM1-responsive rice meiotic gene. 	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0133400 	LOC_Os02g04080.1, LOC_Os02g04060.1				GO:0007064 - mitotic sister chromatid cohesion, GO:0008280 - cohesin core heterodimer, GO:0005524 - ATP binding, GO:0006281 - DNA repair, GO:0007126 - meiosis, GO:0003682 - chromatin binding		
20424	SYP121	OsSYP121	SYNTAXIN OF PLANTS 121	PSY1 homolog, syntaxin, Syntaxin of Plants121	SYNTAXIN OF PLANTS 121		3	an OsAM1-responsive rice meiotic gene. GO:0061025: membrane fusion.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Disease resistance	Os03g0787000	LOC_Os03g57310.1				GO:0031201 - SNARE complex, GO:0012505 - endomembrane system, GO:0006906 - vesicle fusion, GO:0048278 - vesicle docking, GO:0006887 - exocytosis, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0005622 - intracellular, GO:0007126 - meiosis, GO:0006886 - intracellular protein transport, GO:0016192 - vesicle-mediated transport, GO:0016021 - integral to membrane	TO:0000074 - blast disease	PO:0025034 - leaf , PO:0020104 - leaf sheath 
20425	_	OsSNDP5, SNDP5	_	SPO20 homolog, Sec14-nodulin domain protein 5, Sec14-nodulin domain-containing protein 5			1	LOC_Os01g50616. phosphatidylinositol transfer protein. an OsAM1-responsive rice meiotic gene. 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0701900 	LOC_Os01g50616.2, LOC_Os01g50616.1				GO:0007126 - meiosis, GO:0016021 - integral to membrane		
20426	_	APC7, OsAPC7	_	tetratricopeptide repeat domain containing protein, ANAPHASE-PROMOTING COMPLEX 7			5	LOC_Os05g05720. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0149900	LOC_Os05g05720.2, LOC_Os05g05720.1				GO:0007126 - meiosis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0008284 - positive regulation of cell proliferation, GO:0009640 - photomorphogenesis, GO:0000278 - mitotic cell cycle, GO:0042138 - meiotic DNA double-strand break formation, GO:0045132 - meiotic chromosome segregation, GO:0016571 - histone methylation, GO:0010413 - glucuronoxylan metabolic process, GO:0007276 - gamete generation, GO:0042023 - DNA endoreduplication, GO:0010388 - cullin deneddylation, GO:0031048 - chromatin silencing by small RNA, GO:0045492 - xylan biosynthetic process, GO:0043247 - telomere maintenance in response to DNA damage, GO:0007062 - sister chromatid cohesion, GO:0006396 - RNA processing, GO:0009410 - response to xenobiotic stimulus, GO:0051788 - response to misfolded protein, GO:0010332 - response to gamma radiation, GO:0051510 - regulation of unidimensional cell growth, GO:0032204 - regulation of telomere maintenance, GO:0032875 - regulation of DNA endoreduplication, GO:0051302 - regulation of cell division, GO:0007131 - reciprocal meiotic recombination, GO:0016579 - protein deubiquitination, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0043248 - proteasome assembly, GO:0043687 - post-translational protein modification		
20427	_		_	Peptidase family C50			2	LOC_Os02g53120. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0770700 	LOC_Os02g53120.1				GO:0005634 - nucleus, GO:0045876 - positive regulation of sister chromatid cohesion, GO:0009887 - organ morphogenesis, GO:0006312 - mitotic recombination, GO:0051307 - meiotic chromosome separation, GO:0019915 - lipid storage, GO:0016572 - histone phosphorylation, GO:0007062 - sister chromatid cohesion, GO:0007126 - meiosis, GO:0007131 - reciprocal meiotic recombination, GO:0008284 - positive regulation of cell proliferation, GO:0009640 - photomorphogenesis, GO:0010332 - response to gamma radiation, GO:0031048 - chromatin silencing by small RNA, GO:0016567 - protein ubiquitination, GO:0045595 - regulation of cell differentiation, GO:0006275 - regulation of DNA replication, GO:0009909 - regulation of flower development, GO:0051567 - histone H3-K9 methylation, GO:0032204 - regulation of telomere maintenance, GO:0006396 - RNA processing, GO:0042023 - DNA endoreduplication, GO:0042138 - meiotic DNA double-strand break formation, GO:0043247 - telomere maintenance in response to DNA damage, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0008233 - peptidase activity, GO:0048825 - cotyledon development, GO:0009960 - endosperm development, GO:0009880 - embryonic pattern specification, GO:0006302 - double-strand break repair, GO:0010072 - primary shoot apical meristem specification, GO:0000911 - cytokinesis by cell plate formation, GO:0010389 - regulation of G2/M transition of mitotic cell cycle, GO:0050826 - response to freezing, GO:0010162 - seed dormancy, GO:0009845 - seed germination, GO:0051225 - spindle assembly, GO:0010182 - sugar mediated signaling, GO:0007129 - synapsis, GO:0010090 - trichome morphogenesis, GO:0009826 - unidimensional cell growth, GO:0010228 - vegetative to reproductive phase transition		
20428	_	APC5, OsAPC5	_	ANAPHASE PROMOTING COMPLEX 5			12	LOC_Os12g43120. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0626300 	LOC_Os12g43120.2, LOC_Os12g43120.1				GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0007126 - meiosis, GO:0007276 - gamete generation, GO:0032875 - regulation of DNA endoreduplication, GO:0042023 - DNA endoreduplication, GO:0043248 - proteasome assembly, GO:0051302 - regulation of cell division, GO:0051510 - regulation of unidimensional cell growth, GO:0051788 - response to misfolded protein		
20429	_	APC10	_	anaphase-promoting complex subunit 10, ANAPHASE PROMOTING COMPLEX 10			5	LOC_Os05g50360. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0579800 	LOC_Os05g50360.1				GO:0010087 - phloem or xylem histogenesis, GO:0016604 - nuclear body, GO:0005680 - anaphase-promoting complex, GO:0030071 - regulation of mitotic metaphase/anaphase transition, GO:0008283 - cell proliferation, GO:0051301 - cell division, GO:0007276 - gamete generation, GO:0042023 - DNA endoreduplication, GO:0043248 - proteasome assembly, GO:0051510 - regulation of unidimensional cell growth, GO:0007126 - meiosis, GO:0051788 - response to misfolded protein, GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0032876 - negative regulation of DNA endoreduplication, GO:0007067 - mitosis		
20430	_		_	expressed protein			2	LOC_Os02g07240. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0168900	LOC_Os02g07240.1				GO:0007126 - meiosis		
20431	_	DRD1	_				3	LOC_Os03g06920. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0165200/Os03g0165266 					GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0007126 - meiosis		
20432	_	RAD23	_	RAD23 DNA repair protein			8	LOC_Os08g33340. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os08g0430200 	LOC_Os08g33340.2, LOC_Os08g33340.1				GO:0005634 - nucleus, GO:0003684 - damaged DNA binding, GO:0006289 - nucleotide-excision repair, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0007126 - meiosis		
20433	_	MSH3	_	DNA mismatch repair protein MSH3			4	LOC_Os04g58630. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0682900 	LOC_Os04g58630.3, LOC_Os04g58630.2				GO:0009410 - response to xenobiotic stimulus, GO:0048522 - positive regulation of cellular process, GO:0006298 - mismatch repair, GO:0030983 - mismatched DNA binding, GO:0005524 - ATP binding, GO:0007126 - meiosis, GO:0003684 - damaged DNA binding, GO:0007129 - synapsis		
20434	_		_	SLG7-like1			3	LOC_Os03g30530.		Os03g0418700 	LOC_Os03g30530.3, LOC_Os03g30530.2, LOC_Os03g30530.1						
20435	_		_	SLG7-like2			7	LOC_Os07g01860.		Os07g0109400	LOC_Os07g01860.1						
20436	WNK1	OsWNK1	WITH NO LYSINE KINASE 1	With No Lysine kinase 1, WNK protein kinase 1, WNK kinase 1	WITH NO LYSINE KINASE 1		7	Q0D598. A2YMV6. DQ837532.	 Tolerance and resistance - Stress tolerance	Os07g0572800	LOC_Os07g38530.2, LOC_Os07g38530.1				GO:0005524 - ATP binding, GO:0007623 - circadian rhythm, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity	TO:0000075 - light sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
20437	WNK2	OsWNK2	WITH NO LYSINE KINASE 2	With No Lysine kinase 2, WNK protein kinase 2, WNK kinase 2	WITH NO LYSINE KINASE 2		5	Q65X23.	 Tolerance and resistance - Stress tolerance	Os05g0108300	LOC_Os05g01780.2, LOC_Os05g01780.1				GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
20438	WNK3	OsWNK3	WITH NO LYSINE KINASE 3	With No Lysine kinase 3, WNK protein kinase 3, WNK kinase 3	WITH NO LYSINE KINASE 3		7	Q0D847.	 Tolerance and resistance - Stress tolerance	Os07g0185000	LOC_Os07g08750.1				GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance	
20439	WNK4	OsWNK4	WITH NO LYSINE KINASE 4	With No Lysine kinase 4, WNK protein kinase 4, WNK kinase 4	WITH NO LYSINE KINASE 4		2	Q6EU49.		Os02g0672800	LOC_Os02g45130.2, LOC_Os02g45130.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
20440	WNK5	OsWNK5	WITH NO LYSINE KINASE 5	With No Lysine kinase 5, WNK protein kinase 5, WNK kinase 5	WITH NO LYSINE KINASE 5		7	Q0D541.	 Tolerance and resistance - Stress tolerance	Os07g0584100	LOC_Os07g39520.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010260 - organ senescence, GO:0005524 - ATP binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
20441	WNK6	OsWNK6	WITH NO LYSINE KINASE 6	With No Lysine kinase 6, WNK protein kinase 6, WNK kinase 6	WITH NO LYSINE KINASE 6		11	Q2RA93.	 Tolerance and resistance - Stress tolerance	Os11g0160300	LOC_Os11g06140.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
20442	WNK7	OsWNK7	WITH NO LYSINE KINASE 7	With No Lysine kinase 7, WNK protein kinase 7, WNK kinase 7	WITH NO LYSINE KINASE 7		11	Q2RBE3.	 Tolerance and resistance - Stress tolerance	Os11g0114600	LOC_Os11g02305.1, LOC_Os11g02300.2, LOC_Os11g02300.1				GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
20443	WNK8	OsWNK8	WITH NO LYSINE KINASE 8	With No Lysine kinase 8, WNK protein kinase 8, WNK kinase 8	WITH NO LYSINE KINASE 8		12	Q2QYL8.	 Tolerance and resistance - Stress tolerance	Os12g0114100	LOC_Os12g02250.1				GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf 
20444	WNK9	OsWNK9	WITH NO LYSINE KINASE 9	With No Lysine kinase 9, WNK protein kinase 9, WNK kinase 9	WITH NO LYSINE KINASE 9		12	Q2QXC6.	 Tolerance and resistance - Stress tolerance	Os12g0162100	LOC_Os12g06490.2, LOC_Os12g06490.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
20445	GOLS1	OsGolS1, GolS1	GALACTINOL SYNTHASE 1	galactinol synthase 1	GALACTINOL SYNTHASE 1		3	GolS2 homologue in Wang et al. 2016. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0316200	LOC_Os03g20120.1				GO:0048511 - rhythmic process, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006012 - galactose metabolic process, GO:0009628 - response to abiotic stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0009609 - response to symbiotic bacterium, GO:0047216 - inositol 3-alpha-galactosyltransferase activity	TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
20446	_	CCR1, OsCCR1, OsCCR14, CCR14	_	Cinnamoyl-CoA Reductase 1, CCR-like 1, Cinnamoyl-CoA reductase 14			9	LOC_Os09g31514.	 Biochemical character	Os09g0491852 	LOC_Os09g31514.4, LOC_Os09g31514.3, LOC_Os09g31514.2, LOC_Os09g31514.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0009809 - lignin biosynthetic process		
20447	_		_	BLH6-like 2, BEL1-LIKE HOMEODOMAIN6-like 2			12	a protein similar to AtBLH6 (BEL1-LIKE HOMEODOMAIN6). LOC_Os12g43950.	 Other	Os12g0636200 	LOC_Os12g43950.4, LOC_Os12g43950.3, LOC_Os12g43950.2, LOC_Os12g43950.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
20448	_		_				1	Similar to immediate-early protein RSP40.	 Tolerance and resistance - Stress tolerance	Os01g0332900	LOC_Os01g22990.2, LOC_Os01g22990.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20449	_		_				1	Similar to serine/threonine-protein kinase AFC1 like.	 Tolerance and resistance - Stress tolerance	Os01g0837900	LOC_Os01g62080.2, LOC_Os01g62080.1				GO:0009414 - response to water deprivation, GO:0045727 - positive regulation of translation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000276 - drought tolerance	
20450	_		_				1		 Tolerance and resistance - Stress tolerance	Os01g0944100	LOC_Os01g71624.5, LOC_Os01g71624.4, LOC_Os01g71624.3, LOC_Os01g71624.2, LOC_Os01g71624.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20451	_		_				3	Similar to lectin-like receptor kinase 7;2 (receptor lectin like kinase).	 Tolerance and resistance - Stress tolerance	Os03g0257900	LOC_Os03g15240.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20452	_		_				3		 Tolerance and resistance - Stress tolerance	Os03g0857500	LOC_Os03g64030.2, LOC_Os03g64030.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20453	_		_	Tyrosyl-DNA phosphodiesterase family protein			4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0403400	LOC_Os04g33050.1				GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0008270 - zinc ion binding, GO:0008081 - phosphoric diester hydrolase activity, GO:0003676 - nucleic acid binding, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20454	_		_	Peptidase A1 domain containing protein			5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0590000	LOC_Os05g51220.1				GO:0009414 - response to water deprivation, GO:0004190 - aspartic-type endopeptidase activity, GO:0003677 - DNA binding	TO:0000276 - drought tolerance	
20455	FTSH6	OsFtsH6, FtsH6	_				6	Similar to FtsH protease (VAR2) (zinc dependent protease).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0229000	LOC_Os06g12370.1				GO:0010027 - thylakoid membrane organization, GO:0006508 - proteolysis, GO:0010206 - photosystem II repair, GO:0010205 - photoinhibition, GO:0008237 - metallopeptidase activity, GO:0004176 - ATP-dependent peptidase activity, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004222 - metalloendopeptidase activity, GO:0009535 - chloroplast thylakoid membrane, GO:0009941 - chloroplast envelope, GO:0010304 - PSII associated light-harvesting complex II catabolic process	TO:0000276 - drought tolerance	
20456	_		_				6		 Tolerance and resistance - Stress tolerance	Os06g0343000	LOC_Os06g23504.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20457	_		_				6		 Tolerance and resistance - Stress tolerance	Os06g0477600					GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20458	_		_	Pyridine nucleotide-disulphide oxidoreductase (NADH dehydrogenase-like)			7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0564500	LOC_Os07g37730.1				GO:0016491 - oxidoreductase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20459	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0110600	LOC_Os08g01910.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20460	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0192200	LOC_Os08g09300.2, LOC_Os08g09300.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20461	_	SHR5	_	Protein kinase (Leucine-rich repeat receptor like kinase)			8	LOC_Os08g10310.	 Tolerance and resistance - Stress tolerance	Os08g0203400	LOC_Os08g10310.3, LOC_Os08g10310.2, LOC_Os08g10310.1				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0009723 - response to ethylene stimulus, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000276 - drought tolerance, TO:0000173 - ethylene sensitivity	
20462	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0425800	LOC_Os08g32980.2, LOC_Os08g32980.1				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
20463	_		_				11		 Tolerance and resistance - Stress tolerance	Os11g0428500	LOC_Os11g24120.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20464	_		_				12		 Tolerance and resistance - Stress tolerance	Os12g0111700	LOC_Os12g02050.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20465	_		_	Sulfotransferase family protein			12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0270900	LOC_Os12g17160.1				GO:0009414 - response to water deprivation, GO:0008146 - sulfotransferase activity	TO:0000276 - drought tolerance	
20466	_		_	Protein kinase, catalytic domain containing protein			1		 Tolerance and resistance - Stress tolerance	Os01g0117600	LOC_Os01g02830.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
20467	_		_				1	Similar to wound-induced protease inhibitor (WIP1).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0131900	LOC_Os01g04040.1				GO:0005576 - extracellular region, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0008233 - peptidase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20468	_		_				3		 Tolerance and resistance - Stress tolerance	Os03g0826800	LOC_Os03g61150.3, LOC_Os03g61150.2, LOC_Os03g61150.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20469	_	GPAT	_	glycerol-3-phosphate acyltransferase			3	LOC_Os03g61720. Similar to glycerol-3-phosphate acyltransferase 1. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0832800	LOC_Os03g61720.1				GO:0016020 - membrane, GO:0010143 - cutin biosynthetic process, GO:0016746 - transferase activity, transferring acyl groups, GO:0016021 - integral to membrane, GO:0016791 - phosphatase activity, GO:0009414 - response to water deprivation, GO:0016311 - dephosphorylation	TO:0000276 - drought tolerance	
20470	_		_				4		 Tolerance and resistance - Stress tolerance	Os04g0673700	LOC_Os04g57739.2, LOC_Os04g57739.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20471	_		_	Serine/threonine protein kinase domain containing protein			5		 Tolerance and resistance - Stress tolerance	Os05g0545300	LOC_Os05g46750.1				GO:0042981 - regulation of apoptosis, GO:0007346 - regulation of mitotic cell cycle, GO:0051403 - stress-activated MAPK cascade, GO:0005737 - cytoplasm, GO:0032147 - activation of protein kinase activity, GO:0000186 - activation of MAPKK activity, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004709 - MAP kinase kinase kinase activity	TO:0000276 - drought tolerance	
20472	_		_				6		 Tolerance and resistance - Stress tolerance	Os06g0133100					GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20473	_		_				7		 Tolerance and resistance - Stress tolerance	Os07g0190600					GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20474	_		_				7		 Tolerance and resistance - Stress tolerance	Os07g0296000	LOC_Os07g19540.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20475	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0412800	LOC_Os08g31860.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20476	_		_	NAD(P)-binding domain containing protein			8		 Tolerance and resistance - Stress tolerance	Os08g0553800	LOC_Os08g44000.1				GO:0003743 - translation initiation factor activity, GO:0009414 - response to water deprivation, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016117 - carotenoid biosynthetic process, GO:0009637 - response to blue light, GO:0010207 - photosystem II assembly, GO:0009534 - chloroplast thylakoid, GO:0006364 - rRNA processing, GO:0010114 - response to red light, GO:0010218 - response to far red light	TO:0000276 - drought tolerance	
20477	_		_				9	Similar to plant viral-response family protein.	 Tolerance and resistance - Stress tolerance	Os09g0444900	LOC_Os09g27260.1				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
20478	_		_				12	Similar to H0321H01.8 protein.	 Tolerance and resistance - Stress tolerance	Os12g0142900	LOC_Os12g04880.2, LOC_Os12g04880.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20479	_		_				12	Non-protein coding transcript.	 Tolerance and resistance - Stress tolerance	Os12g0266000	LOC_Os12g16524.3, LOC_Os12g16524.2, LOC_Os12g16524.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20480	_	ZRP4, OsASMT2, ASMT2	_	O-methyltransferase ZRP4, N-acetylserotonin methyltransferase 2			10	LOC_Os10g02880.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0118200 	LOC_Os10g02880.1				GO:0008171 - O-methyltransferase activity, GO:0046688 - response to copper ion, GO:0006952 - defense response	TO:0000112 - disease resistance, TO:0000021 - copper sensitivity	
20481	_	ZRP4, OMT, ASMT, OsASMT1, ASMT1	_	O-methyltransferase ZRP4, O-methyltransferase, N-acetylserotonin methyltransferase			9	LOC_Os09g17560.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0344500 	LOC_Os09g17560.1				GO:0009411 - response to UV, GO:0046688 - response to copper ion, GO:0008171 - O-methyltransferase activity, GO:0006952 - defense response	TO:0000160 - UV light sensitivity, TO:0000021 - copper sensitivity, TO:0000112 - disease resistance	
20482	_		_	Non-specific lipid-transfer protein 2			11	LOC_Os11g02369. Q7XJ39.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0115350 	LOC_Os11g02369.1				GO:0046688 - response to copper ion, GO:0006869 - lipid transport, GO:0009611 - response to wounding, GO:0008289 - lipid binding	TO:0000021 - copper sensitivity	PO:0000022 - plant cuticle 
20483	HSA1B	hsa1(t), s(t), hst49	F2 STERILITY-1	F2 sterility-1(t)		hsa1-IR	12	This gene causes F2 sterility complementarily with hsa2(t) in the cross between japonica and indica cross. hsa1 locus contains two interacting genes, HSA1a and HSA1b, within a 30-kb region (Kubo et al. 2016). LOC_Os12g39920. LC026149(cDNA accession, IR24, indica) and LC026150(cDNA accession, Asomidori, japonica).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness		LOC_Os12g39920	GR:0061092			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
20484	BOR3	OsBOR3	EFFLUX BORON TRANSPORTER 3	Boron transporter 3	EFFLUX BORON TRANSPORTER 3		1	LOC_Os01g08020.	 Biochemical character	Os01g0175600	LOC_Os01g08020.1	GR:0101273			GO:0005452 - inorganic anion exchanger activity, GO:0016021 - integral to membrane		
20485	CGA1	Cga1, OsCga1, OsCGA1, OsGATA11, GATA11	CYTOKININ GATA TRANSCRIPTION FACTOR 1	Cytokinin GATA Transcription Factor1, Cytokinin GATA Transcription Factor 1, GATA Transcription Factor 11, GATA factor 11, CYTOKININ-INDUCED GATA1	CYTOKININ GATA TRANSCRIPTION FACTOR 1		2	LOC_Os02g12790. GO:0001085 RNA polymerase II transcription factor binding. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other	Os02g0220400	LOC_Os02g12790.1				GO:0009658 - chloroplast organization, GO:0009735 - response to cytokinin stimulus, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0009414 - response to water deprivation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0019252 - starch biosynthetic process, GO:0009739 - response to gibberellin stimulus, GO:0010260 - organ senescence, GO:0009416 - response to light stimulus, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0009507 - chloroplast, GO:0009646 - response to absence of light	TO:0000201 - panicle color, TO:0000128 - harvest index, TO:0002661 - seed maturation, TO:0000495 - chlorophyll content, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000075 - light sensitivity, TO:0000276 - drought tolerance, TO:0002715 - chloroplast development trait	PO:0007632 - seed maturation stage 
20486	GATA1 	OsGATA1, OsGATA6, GATA6	GATA TRANSCRIPTION FACTOR 1	GATA transcription factor 1, GATA factor 1	GATA TRANSCRIPTION FACTOR 1		5	LOC_Os05g44400.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. OsGATA6 in Gupta et al. 2017.	 Other	Os05g0520300	LOC_Os05g44400.1				GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0003682 - chromatin binding		
20487	GATA2	OsGATA2, OsGATA2a, OsGATA2b	GATA TRANSCRIPTION FACTOR 2	GATA transcription factor 2, GATA factor 2	GATA TRANSCRIPTION FACTOR 2		2	LOC_Os02g43150.1 (OsGATA2a), LOC_Os02g43150.2 (OsGATA2a). GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os02g0645600 	LOC_Os02g43150.2, LOC_Os02g43150.1				GO:0003682 - chromatin binding, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0005634 - nucleus		
20488	GATA3	OsGATA3	GATA TRANSCRIPTION FACTOR 3	GATA transcription factor 3, GATA factor 3	GATA TRANSCRIPTION FACTOR 3		2	OSJNBa0049O12.10. 	 Other						GO:0008270 - zinc ion binding, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
20489	GATA4	OsGATA4	GATA TRANSCRIPTION FACTOR 4	GATA transcription factor 4, GATA factor 4	GATA TRANSCRIPTION FACTOR 4		3	LOC_Os03g05160.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Tolerance and resistance - Stress tolerance,  Other	Os03g0145200	LOC_Os03g05160.1				GO:0005634 - nucleus, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0005667 - transcription factor complex, GO:0003682 - chromatin binding, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
20490	GATA5	OsGATA5	GATA TRANSCRIPTION FACTOR 5	GATA transcription factor 5, GATA factor 5	GATA TRANSCRIPTION FACTOR 5		4	LOC_Os04g45650.2 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os04g0539500	LOC_Os04g45650.2				GO:0006366 - transcription from RNA polymerase II promoter, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0016021 - integral to membrane, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0008270 - zinc ion binding		
20491	GATA6	OsGATA6, OsGATA1, GATA1	GATA TRANSCRIPTION FACTOR 6	GATA transcription factor 6, GATA factor 6	GATA TRANSCRIPTION FACTOR 6		1	LOC_Os01g54210.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. OsGATA1 in Gupta et al. 2017.	 Other	Os01g0745700	LOC_Os01g54210.1				GO:0003682 - chromatin binding, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		
20492	GATA7	OsGATA7	GATA TRANSCRIPTION FACTOR 7	GATA transcription factor 7, GATA factor 7	GATA TRANSCRIPTION FACTOR 7		10	LOC_Os10g40810. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Character as QTL - Yield and productivity,  Other	Os10g0557600 	LOC_Os10g40810.1				GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0003682 - chromatin binding, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus	TO:0002730 - grain shape, TO:0002759 - grain number, TO:0000227 - root length, TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height, TO:0000547 - primary branch number, TO:0000590 - grain weight	PO:0025034 - leaf , PO:0009037 - lemma , PO:0009029 - stamen , PO:0009005 - root , PO:0020142 - stem internode 
20493	GATA8	OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b	GATA TRANSCRIPTION FACTOR 8	GATA transcription factor 8, GATA factor 8	GATA TRANSCRIPTION FACTOR 8		1	LOC_Os01g24070.1 (OsGATA8a), LOC_Os01g24070.2 (OsGATA8b). GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. OsGATA14 in Behringer and Schwechheimer 2015.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0343300	LOC_Os01g24070.2, LOC_Os01g24070.1				GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0003682 - chromatin binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0005667 - transcription factor complex	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
20494	GATA9	OsGATA9	GATA TRANSCRIPTION FACTOR 9	GATA transcription factor 9, GATA factor 9	GATA TRANSCRIPTION FACTOR 9		1	LOC_Os01g47360.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os01g0662800	LOC_Os01g47360.1				GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation		
20495	GATA10	OsGATA10	GATA TRANSCRIPTION FACTOR 10	GATA transcription factor 10, GATA factor 10	GATA TRANSCRIPTION FACTOR 10		1	LOC_Os01g74540.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os01g0976800	LOC_Os01g74540.1				GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex		
20496	GATA12	OsGATA12	GATA TRANSCRIPTION FACTOR 12	GATA transcription factor 12, GATA factor 12	GATA TRANSCRIPTION FACTOR 12		3	LOC_Os03g61570. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. TO:0000905: seed yield.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Other	Os03g0831200	LOC_Os03g61570.2, LOC_Os03g61570.1				GO:0003682 - chromatin binding, GO:0015996 - chlorophyll catabolic process, GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0009658 - chloroplast organization, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0010150 - leaf senescence, GO:0015995 - chlorophyll biosynthetic process, GO:0051301 - cell division, GO:0048573 - photoperiodism, flowering, GO:0048364 - root development, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter	TO:0000449 - grain yield per plant, TO:0002715 - chloroplast development trait, TO:0000249 - leaf senescence, TO:0000371 - yield trait, TO:0000084 - root number, TO:0000207 - plant height, TO:0000445 - seed number, TO:0000326 - leaf color, TO:0000241 - leaf number, TO:0000346 - tiller number, TO:0000128 - harvest index, TO:0000495 - chlorophyll content, TO:0000457 - total biomass yield, TO:0000344 - days to flower, TO:0002616 - flowering time, TO:0002673 - amino acid content, TO:0000702 - starch concentration, TO:0000340 - total soluble sugar content, TO:0000656 - root development trait, TO:0000227 - root length	PO:0001031 - 4 root elongation stage , PO:0001054 - 4 leaf senescence stage 
20497	GATA13	OsGATA13	GATA TRANSCRIPTION FACTOR 13	GATA transcription factor 13, GATA factor 13	GATA TRANSCRIPTION FACTOR 13		5	LOC_Os05g06340.1 AA752076. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os05g0155400	LOC_Os05g06340.1				GO:0030154 - cell differentiation, GO:0005667 - transcription factor complex, GO:0003682 - chromatin binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter		
20498	GATA14	OsGATA14	GATA TRANSCRIPTION FACTOR 14	GATA transcription factor 14, GATA factor 14	GATA TRANSCRIPTION FACTOR 14		5		 Other								
20499	GATA16	OsGATA16, OsGNC, GNC	GATA TRANSCRIPTION FACTOR 16	"GATA transcription factor 16, GATA factor 16, \"GATA, NITRATE-INDUCIBLE, CARBON-METABOLISM INVOLVED\""	GATA TRANSCRIPTION FACTOR 16		6	LOC_Os06g37450.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os06g0571800	LOC_Os06g37450.1				GO:0005667 - transcription factor complex, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005634 - nucleus, GO:0003682 - chromatin binding		
20500	GATA21	OsGATA21	GATA TRANSCRIPTION FACTOR 21	GATA transcription factor 21, GATA factor 21	GATA TRANSCRIPTION FACTOR 21		11		 Other	Os11g0572901					GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0043565 - sequence-specific DNA binding		
20501	GATA22	OsGATA22	GATA TRANSCRIPTION FACTOR 22	GATA transcription factor 22, GATA factor 22	GATA TRANSCRIPTION FACTOR 22		3	LOC_Os03g08370.1	 Tolerance and resistance - Stress tolerance,  Other	Os03g0181600	LOC_Os03g08370.1				GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0008270 - zinc ion binding	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
20502	GATA23	OsGATA23, OsGATA23a, OsGATA23b	GATA TRANSCRIPTION FACTOR 23	GATA transcription factor 23, GATA factor 23	GATA TRANSCRIPTION FACTOR 23		7	LOC_Os07g42400.1	 Other,  Tolerance and resistance - Stress tolerance	Os07g0615900					GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0008270 - zinc ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
20503	GATA24	OsGATA24	GATA TRANSCRIPTION FACTOR 24	GATA transcription factor 24, GATA factor 24	GATA TRANSCRIPTION FACTOR 24		10	LOC_Os10g32070. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os10g0458800 	LOC_Os10g32070.1				GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0003682 - chromatin binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0005667 - transcription factor complex		
20504	GATA25	OsGATA25	GATA TRANSCRIPTION FACTOR 25	GATA transcription factor 25, GATA factor 25	GATA TRANSCRIPTION FACTOR 25		12	LOC_Os12g42970. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os12g0624900  	LOC_Os12g42970.1				GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation		
20505	GATA26	OsGATA26	GATA TRANSCRIPTION FACTOR 26	GATA transcription factor 26, GATA factor 26	GATA TRANSCRIPTION FACTOR 26		12	LOC_Os12g07120.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Tolerance and resistance - Stress tolerance,  Other	Os12g0168800 	LOC_Os12g07120.1				GO:0006366 - transcription from RNA polymerase II promoter, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
20506	GATA28	OsGATA28	GATA TRANSCRIPTION FACTOR 28	GATA transcription factor 28, GATA factor 28	GATA TRANSCRIPTION FACTOR 28		11	LOC_Os11g08410. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Other	Os11g0187200 	LOC_Os11g08410.1				GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:2000028 - regulation of photoperiodism, flowering, GO:0005634 - nucleus, GO:0003682 - chromatin binding	TO:0000040 - panicle length, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000207 - plant height	
20507	GATA27	OsGATA27	GATA TRANSCRIPTION FACTOR 27	GATA transcription factor 27, GATA factor 27	GATA TRANSCRIPTION FACTOR 27		3	LOC_Os03g03850.1 GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085: RNA polymerase II transcription factor binding. GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding. 	 Other		LOC_Os03g03850				GO:0008270 - zinc ion binding, GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0003682 - chromatin binding		
20508	_	OsGATA8, GATA8, OsGATA14, GATA14	_	GATA transcription factor 8, GATA factor 8			5	LOC_Os05g49280.1 OsGATA14 in Gupta et al. 2017.	 Other	Os05g0567900	LOC_Os05g49280.1						
20509	NIGT1		NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1	"\"Nitrate-Inducible, GARP-type Transcriptional Repressor 1\""	NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1		2	TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0325600	LOC_Os02g22020.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0019740 - nitrogen utilization, GO:0003677 - DNA binding, GO:0010167 - response to nitrate, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000495 - chlorophyll content	
20510	_	SGL1	_	SG1-LIKE PROTEIN1, SG1-LIKE PROTEIN 1			2	GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Reproductive organ - Panicle, Mode of branching	Os02g0762600	LOC_Os02g52490.2, LOC_Os02g52490.1				GO:0009741 - response to brassinosteroid stimulus, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009742 - brassinosteroid mediated signaling	TO:0000625 - spikelet density, TO:0000206 - leaf angle, TO:0000207 - plant height, TO:0000146 - seed length, TO:0000040 - panicle length, TO:0002677 - brassinosteroid sensitivity, TO:0000089 - panicle type, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000734 - grain length, TO:0000145 - internode length	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0007089 - stem elongation stage 
20511	_		_	SG1-related protein			8	The spatial and temporal profiles of Os08g0474100 expression retrieved from the Rice Expression Profile Database (Sato et al., 2011) were similar to those of SG1 and SGL1, although the signal intensity was weak (Nakagawa et al. 2011).		Os08g0474100							
20512	CYP93G1	OsCYP93G1, OsFNSII, FNSII	P-450 93G1	Cytochrome P450 93G1, Flavone Synthase II	CYTOCHROME P450 93G1	fnsII	4	LOC_Os04g01140. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os04g0101400 	LOC_Os04g01140.2, LOC_Os04g01140.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0009827 - plant-type cell wall modification, GO:0009809 - lignin biosynthetic process, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding	TO:0000733 - lignin biosynthesis trait, TO:0000597 - quality trait, TO:0000731 - lignin content	PO:0009037 - lemma , PO:0000290 - tracheary element , PO:0025034 - leaf , PO:0009038 - palea 
20513	CYP93F1	OsCYP93F1	P-450 93F1	Cytochrome P450 93F1	CYTOCHROME P450 93F1		6	LOC_Os06g41070. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os06g0613600 	LOC_Os06g41070.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0020037 - heme binding		
20514	_	ENL1L	_	ENL1-LIKE			4	an ENL1 paralog. LOC_Os04g59620. 		Os04g0692700 	LOC_Os04g59620.1						
20515	_	OsRePRP1.2, RePRP1.2	_	REPETITIVE PROLINE-RICH PROTEIN 1.2			5	GO:2001085: arabinogalactan binding.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os05g0227600	LOC_Os05g13940.1				GO:0030247 - polysaccharide binding, GO:0009651 - response to salt stress, GO:0048364 - root development, GO:0051511 - negative regulation of unidimensional cell growth, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane	TO:0000306 - root thickness, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000615 - abscisic acid sensitivity, TO:0000227 - root length	PO:0009047 - stem , PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
20516	_	OsRePRP2.1, RePRP2.1	_	REPETITIVE PROLINE-RICH PROTEIN 2.1			7	GO:2001085: arabinogalactan binding.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os07g0418700 	LOC_Os07g23660.1				GO:0048364 - root development, GO:0051511 - negative regulation of unidimensional cell growth, GO:0030247 - polysaccharide binding, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane	TO:0000227 - root length, TO:0000656 - root development trait, TO:0000306 - root thickness, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage , PO:0009049 - inflorescence , PO:0009005 - root 
20517	_	OsRePRP2.2, RePRP2.2	_	REPETITIVE PROLINE-RICH PROTEIN 2.2			7	GO:2001085: arabinogalactan binding.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os07g0418600	LOC_Os07g23640.1				GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0048364 - root development, GO:0030247 - polysaccharide binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0051511 - negative regulation of unidimensional cell growth	TO:0000615 - abscisic acid sensitivity, TO:0000656 - root development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000227 - root length, TO:0000306 - root thickness	PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage , PO:0009049 - inflorescence , PO:0009005 - root 
20518	SRL1	OsSRL1, CLD1/SRL1, CLD1, OsCLD1	SEMI-ROLLED LEAF 1	SEMI-ROLLED LEAF1, curled leaf and dwarf 1		srl1-1, srl1-2, cld1	7	a Putative Glycosylphosphatidylinositol-Anchored Protein. LOC_Os07g01240. TO:0000872: leaf erect. TO:0000993: cellulose content. TO:0000847: panicle inflorescence morphology trait. TO:0020097: stomatal opening. GO:1990069: stomatal opening.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os07g0102300 	LOC_Os07g01240.2, LOC_Os07g01240.1				GO:0030104 - water homeostasis, GO:0009506 - plasmodesma, GO:0046658 - anchored to plasma membrane, GO:0009832 - plant-type cell wall biogenesis, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009733 - response to auxin stimulus, GO:0009635 - response to herbicide, GO:0009751 - response to salicylic acid stimulus, GO:0042335 - cuticle development, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000206 - leaf angle, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000145 - internode length, TO:0000180 - spikelet fertility, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000058 - herbicide sensitivity, TO:0000163 - auxin sensitivity, TO:0000396 - grain yield, TO:0000316 - photosynthetic ability, TO:0000085 - leaf rolling, TO:0000259 - heat tolerance, TO:0000731 - lignin content, TO:0000131 - leaf water potential, TO:0000136 - relative water content, TO:0000276 - drought tolerance, TO:0002681 - leaf curling	PO:0004001 - bulliform cell 
20519	_	VHA-A2, VHAA2	_	vacuolar H+-ATPase subunit A, Vacuolar proton-ATPase subunit A, vacuolar-type H+-ATPase subunit A2	_		2	LOC_Os02g07870.	 Biochemical character	Os02g0175400 	LOC_Os02g07870.1				GO:0005524 - ATP binding, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0046034 - ATP metabolic process, GO:0033180 - proton-transporting V-type ATPase, V1 domain		
20520	_		_	vacuolar H+-ATPase subunit C, Vacuolar ATP synthase 21-kD proteolipid subunit C	_		1	LOC_Os01g42430.	 Biochemical character	Os01g0610100	LOC_Os01g42430.1				GO:0016021 - integral to membrane, GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0007035 - vacuolar acidification		
20521	_		_	vacuolar H+-ATPase subunit D, Vacuolar ATP synthase subunit D	_		4	LOC_Os04g55040.	 Biochemical character	Os04g0643100	LOC_Os04g55040.2, LOC_Os04g55040.1				GO:0006007 - glucose catabolic process, GO:0005886 - plasma membrane, GO:0005794 - Golgi apparatus, GO:0000325 - plant-type vacuole, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009651 - response to salt stress, GO:0007033 - vacuole organization, GO:0007030 - Golgi organization, GO:0006816 - calcium ion transport, GO:0006623 - protein targeting to vacuole		
20522	_	SKD1	_	SKD1 protein, Vacuolar sorting protein4b, Vacuolar sorting protein 4b			1	LOC_Os01g55260.	 Biochemical character	Os01g0757400	LOC_Os01g55260.2, LOC_Os01g55260.1				GO:0008568 - microtubule-severing ATPase activity, GO:0005524 - ATP binding		
20523	_		_	Vacuolar protein sorting36 family protein, Vacuolar protein sorting 36 family protein			1	LOC_Os01g59800.	 Biochemical character	Os01g0813500 	LOC_Os01g59800.3, LOC_Os01g59800.2, LOC_Os01g59800.1				GO:0031902 - late endosome membrane, GO:0000814 - ESCRT II complex, GO:0032266 - phosphatidylinositol 3-phosphate binding, GO:0043130 - ubiquitin binding, GO:0043328 - protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway		
20524	_		_	Vacuolar protein-sorting protein45 homolog, Vacuolar protein-sorting protein 45 homolog, AtVPS45 homolog			2	LOC_Os02g24134.	 Biochemical character	Os02g0437800	LOC_Os02g24134.4, LOC_Os02g24134.3, LOC_Os02g24134.2, LOC_Os02g24134.1				GO:0006612 - protein targeting to membrane, GO:0043269 - regulation of ion transport, GO:0010363 - regulation of plant-type hypersensitive response, GO:0043069 - negative regulation of programmed cell death, GO:0009624 - response to nematode, GO:0006904 - vesicle docking during exocytosis, GO:0009705 - plant-type vacuole membrane, GO:0005802 - trans-Golgi network, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0015696 - ammonium transport, GO:0043090 - amino acid import, GO:0015802 - basic amino acid transport, GO:0006882 - cellular zinc ion homeostasis, GO:0006816 - calcium ion transport, GO:0006862 - nucleotide transport, GO:0006623 - protein targeting to vacuole		
20525	_		_	Vacuolar protein sorting-associated protein35 family protein, Vacuolar protein sorting-associated protein 35 family protein			3	LOC_Os03g58700.	 Biochemical character	Os03g0801600	LOC_Os03g58700.1				GO:0005770 - late endosome, GO:0042147 - retrograde transport, endosome to Golgi, GO:0006886 - intracellular protein transport, GO:0008565 - protein transporter activity, GO:0030904 - retromer complex		
20526	_		_	Vacuolar sorting receptor homolog			4	LOC_Os04g52190.	 Biochemical character	Os04g0611400	LOC_Os04g52190.1				GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane		
20527	_		_	Vacuolar ATP synthase subunit C			5	LOC_Os05g51530.	 Biochemical character	Os05g0593100 	LOC_Os05g51530.2, LOC_Os05g51530.1				GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain, GO:0000325 - plant-type vacuole, GO:0005794 - Golgi apparatus, GO:0005886 - plasma membrane, GO:0006007 - glucose catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0006816 - calcium ion transport, GO:0007030 - Golgi organization, GO:0007033 - vacuole organization, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009809 - lignin biosynthetic process, GO:0009853 - photorespiration, GO:0009932 - cell tip growth, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0016051 - carbohydrate biosynthetic process, GO:0030243 - cellulose metabolic process, GO:0043255 - regulation of carbohydrate biosynthetic process, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0048193 - Golgi vesicle transport, GO:0048765 - root hair cell differentiation, GO:0051788 - response to misfolded protein, GO:0080129 - proteasome core complex assembly		
20528	GD1	OsVAL1, VAL1	GERMINATION DEFECTIVE 1	germination-defective1		gd1	7	a B3 domain transcriptional repressor. a homolog of Arabidopsis VAL genes. LOC_Os07g37610. Q0D5G4. GO:1900140: regulation of seedling development.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os07g0563300	LOC_Os07g37610.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009685 - gibberellin metabolic process, GO:0009743 - response to carbohydrate stimulus, GO:0009908 - flower development, GO:0010029 - regulation of seed germination, GO:0016564 - transcription repressor activity, GO:0033500 - carbohydrate homeostasis, GO:0048366 - leaf development, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000333 - sugar content, TO:0000622 - flower development trait, TO:0002675 - gibberellic acid content, TO:0000696 - starch content, TO:0000207 - plant height	PO:0007615 - flower development stage , PO:0007131 - seedling development stage , PO:0007057 - 0 seed germination stage 
20529	_	OsVAL2, VAL2	_	VP1/ABI3-LIKE 2		osval2, osval2-T1-1, osval2-T1-2, osval2-T2-1, osval2-T2-2	7	a homolog of Arabidopsis VAL genes. LOC_Os07g48200. Q6Z3U3. 	 Other	Os07g0679700 	LOC_Os07g48200.2, LOC_Os07g48200.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent		
20530	_		_	HTH1-related protein			8	a close homolog of ONI3.	 Biochemical character	Os08g0401500	LOC_Os08g31030.1				GO:0050660 - FAD binding, GO:0016829 - lyase activity, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors		
20531	_	alpha-Gal II	_	alpha-galactosidase II			7	LOC_Os07g26900.	 Biochemical character	Os07g0452100	LOC_Os07g26900.1	GR:0101256					
20532	_	alpha-Gal III	_	alpha-galactosidase III			7	LOC_Os07g48160. GO:0052692: raffinose alpha-galactosidase activity.	 Biochemical character	Os07g0679300	LOC_Os07g48160.1	GR:0101257			GO:0006891 - intra-Golgi vesicle-mediated transport, GO:0006635 - fatty acid beta-oxidation, GO:0005773 - vacuole, GO:0005975 - carbohydrate metabolic process, GO:0006869 - lipid transport, GO:0048767 - root hair elongation, GO:0016558 - protein import into peroxisome matrix, GO:0010351 - lithium ion transport, GO:0009755 - hormone-mediated signaling, GO:0009505 - plant-type cell wall		
20533	_		_	3-Oxoacyl-[acyl-carrier-protein] reductase			4	LOC_Os04g30760.	 Biochemical character	Os04g0376300	LOC_Os04g30760.1	GR:0101294			GO:0016491 - oxidoreductase activity		
20534	CYP75B4	OsCYP75B4, OsC5'H, C5'H	P-450 75B4	Cytochrome P450 75B4	CYTOCHROME P450 75B4		10	LOC_Os10g16974. GO:0044550: secondary metabolite biosynthetic process. a flavonoid 39-hydroxylase.	 Biochemical character	Os10g0317900 	LOC_Os10g16974.1				GO:0005506 - iron ion binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0016020 - membrane		PO:0009038 - palea , PO:0025034 - leaf , PO:0009037 - lemma 
20535	CYP75A11	OsCYP75A11	P-450 75A11	Cytochrome P450 75A11	CYTOCHROME P450 75A11		3	LOC_Os03g25150.	 Biochemical character	Os03g0367101/Os03g0367200 							
20536	_		_	EPF zinc-finger, plant-specific EPF subclass Cys2-His2 zinc-finger protein			4	LOC_Os04g08600.	 Other	Os04g0168100	LOC_Os04g08600.1	GR:0101259			GO:0003700 - transcription factor activity, GO:0046872 - metal ion binding		
20537	_		_	EPF zinc-finger, plant-specific EPF subclass Cys2-His2 zinc-finger protein			2		 Other	Os02g0100900	LOC_Os02g01090.1				GO:0046872 - metal ion binding		
20538	_		_	EPF zinc-finger, plant-specific EPF subclass Cys2-His2 zinc-finger protein			11		 Other	Os11g0707300	LOC_Os11g48000.1				GO:0046872 - metal ion binding		
20539	_		_	EPF zinc-finger, plant-specific EPF subclass Cys2-His2 zinc-finger protein			4	LOC_Os04g50070.	 Other		LOC_Os04g50070				GO:0046872 - metal ion binding		
20540	DXS2	OsDXS2, dxs2	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2	1-Deoxy-D-xylulose 5-phosphate synthase 2	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2		6	LOC_Os06g05100. Transketolase.	 Biochemical character	Os06g0142900	LOC_Os06g05100.5, LOC_Os06g05100.4, LOC_Os06g05100.3, LOC_Os06g05100.2, LOC_Os06g05100.1	GR:0101296			GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity, GO:0016114 - terpenoid biosynthetic process		
20541	_	OsDAHPS1, DAHPS1	_	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1			3	Q75LR2. AB122057. LOC_Os03g27230.	 Biochemical character	Os03g0389700	LOC_Os03g27230.1	GR:0101286			GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity, GO:0009507 - chloroplast, GO:0009423 - chorismate biosynthetic process, GO:0009073 - aromatic amino acid family biosynthetic process		
20542	NCA1A	OsCOIN, COIN, OsNCA1a, NCA1a	NO CATALASE ACTIVITY 1A	cold-inducible, cold-inducible zinc finger protein	_	nca1a	1	LOC_Os01g01420. nca1a/nca1b double mutant displayed obvious lesion and even albino symptoms on leaves throughout the growth stages (Liu et al. 2019.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0104100 	LOC_Os01g01420.1, LOC_Os01g01420.2, LOC_Os01g01420.3	GR:0101269			GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006002 - proline content, TO:0000326 - leaf color	PO:0025034 - leaf 
20543	_	Du1L	_	Du1-like			1	LOC_Os01g15860. GO:2000630: positive regulation of miRNA metabolic process. GO:2000636: positive regulation of primary miRNA processing. GO:0080188: RNA-directed DNA methylation.		Os01g0263600	LOC_Os01g15860.1	GR:0101268			GO:0071013 - catalytic step 2 spliceosome, GO:0000244 - assembly of spliceosomal tri-snRNP, GO:0046540 - U4/U6 x U5 tri-snRNP complex		
20544	SDH2-2	sdh2-2	SUCCINATE DEHYDROGENASE SUBUNIT 2-2	mitochondrial Complex II subunit SDH2-2	SUCCINATE DEHYDROGENASE SUBUNIT 2-2		9	LOC_Os09g20440. Q6H4G3.	 Biochemical character	Os09g0370300	LOC_Os09g20440.1	GR:0100184			GO:0006121 - mitochondrial electron transport, succinate to ubiquinone, GO:0006099 - tricarboxylic acid cycle, GO:0005743 - mitochondrial inner membrane, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0045281 - succinate dehydrogenase complex, GO:0045273 - respiratory chain complex II, GO:0009055 - electron carrier activity, GO:0008177 - succinate dehydrogenase (ubiquinone) activity		
20545	_	sdh3, SDH3	_	mitochondrial Complex II subunit SDH3, SUCCINATE DEHYDROGENASE SUBUNIT 3			7	LOC_Os07g33680. Q84VK7.	 Biochemical character	Os07g0521000	LOC_Os07g33680.1				GO:0045273 - respiratory chain complex II, GO:0005749 - mitochondrial respiratory chain complex II, GO:0006121 - mitochondrial electron transport, succinate to ubiquinone, GO:0006099 - tricarboxylic acid cycle, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane		
20546	XA40		XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 40	Xanthomonas oryzae pv. oryzae resistance 40			11	Resistant to bacterial blight disease. Xa40(t) gene was defined by RM27320 and ID55.WA18-5 located on the BAC clone OSJNBa0036K13. Xa40(t) contains a (gene LOC_11g46900) encoding a wall-associated receptor kinase (WAK) 3 precursor. 	 Tolerance and resistance - Disease resistance			GR:0061188			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
20547	ST2	ALR, OsDCD, DCD	STRIPE 2 	STRIPE2, albinic leaf and growth retardation, dCMP deaminase		st2, alr	1		 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Seed - Morphological traits	Os01g0765000	LOC_Os01g55974.3, LOC_Os01g55974.2, LOC_Os01g55974.1				GO:0005739 - mitochondrion, GO:0004132 - dCMP deaminase activity, GO:0008270 - zinc ion binding, GO:0009658 - chloroplast organization, GO:0010027 - thylakoid membrane organization, GO:0015995 - chlorophyll biosynthetic process, GO:0010020 - chloroplast fission, GO:0008284 - positive regulation of cell proliferation, GO:0045787 - positive regulation of cell cycle, GO:0006281 - DNA repair, GO:0016787 - hydrolase activity	TO:0002715 - chloroplast development trait, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content, TO:0000040 - panicle length, TO:0000346 - tiller number, TO:0000137 - days to heading, TO:0000145 - internode length, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000391 - seed size	
20548	XA42	xa42	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 42			Xa42, xa42	3	Mutated recessive allele xa42 is resistant to Japanese race II in homozygous form. XA42 is located around the centromeric region of rice chromosome 3. XA42 gene was located in the 57 kb-chromosomal region between DNA markers KGC3_16.341 and KGC3_16.399. XA42 candidate genes: Os03g0401951, Os03g0402000, Os03g0402200, Os03g0402400, Os03g0402600, LOC_Os03g28430. (Busing et al. 2018)	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
20549	ROC6	Roc6(t), Roc6, GL2-6	RICE OUTMOST CELL-SPECIFIC GENE 6	Rice outmost cell -specific gene 6(t), Rice outermost cell-specific gene-6, Homeobox-leucine zipper protein ROC6, Homeodomain transcription factor ROC6, HD-ZIP protein ROC6, Protein RICE OUTERMOST CELL-SPECIFIC 6, GLABRA 2-like homeobox protein 6, Rice ooutmost cell-specific gene6	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC6		9	A GL2-type of homeobox gene. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. AB101649. Q7Y0V7.	 Other	Os09g0526200/Os09g0526300		GR:0061421			GO:0006351 - transcription, DNA-dependent, GO:0008289 - lipid binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
20550	ROC7	Roc7(t), Roc7, GL2-7	RICE OUTMOST CELL-SPECIFIC GENE 7	Rice outmost cell -specific gene 7(t), Rice outermost cell-specific gene-7, Homeobox-leucine zipper protein ROC7, Homeodomain transcription factor ROC7, HD-ZIP protein ROC7, Protein RICE OUTERMOST CELL-SPECIFIC 7, GLABRA 2-like homeobox protein 7, Rice ooutmost cell-specific gene7	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC7		8	A GL2-type of homeobox gene. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. AB101650. A3BPF2.	 Other	Os08g0136100	LOC_Os08g04190.1	GR:0061422			GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0008289 - lipid binding, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
20551	ROC8	Roc8(t), Roc8, GL2-8	RICE OUTMOST CELL-SPECIFIC GENE 8	Rice outmost cell -specific gene 8(t), Rice outermost cell-specific gene-8, Homeobox-leucine zipper protein ROC8, Homeodomain transcription factor ROC8, HD-ZIP protein ROC8, Protein RICE OUTERMOST CELL-SPECIFIC 8, GLABRA 2-like homeobox protein 8, Rice ooutmost cell-specific gene8	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8		6	A GL2-type of homeobox gene. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. AB101651. Q69T58.	 Other	Os06g0207966/Os06g0208100		GR:0061423			GO:0043565 - sequence-specific DNA binding, GO:0008289 - lipid binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
20552	ROC9	Roc9(t), Roc9, GL2-9, OsGL2, GL2	RICE OUTMOST CELL-SPECIFIC GENE 9	Rice outmost cell -specific gene 9(t), Rice outermost cell-specific gene-9, Homeobox-leucine zipper protein ROC9, Homeodomain transcription factor ROC9, HD-ZIP protein ROC9, Protein RICE OUTERMOST CELL-SPECIFIC 9, GLABRA 2-like homeobox protein 9, Rice ooutmost cell-specific gene9, GLABRA2, GLABRA 2	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC9		1	A GL2-type of homeobox gene. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. AB101652. Q5JMF3. LOC_Os01g55549. a homologue of Arabidopsis transcription factor GL2.	 Other	Os01g0760800	LOC_Os01g55549.1	GR:0061424			GO:0008289 - lipid binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent		
20553	RPT1A	OsRpt1a, Rpt1a	19S REGULATORY PARTICLE ATPASE SUBUNIT 1A	19S regulatory particle ATPase subunit 1a, RP triple A-ATPase 1a	19S REGULATORY PARTICLE ATPASE SUBUNIT 1A		6	a 19S regulatory particle subunit from the rice 26S proteasome. C99643, C99642. AB033535. Q9FXT9. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os06g0192600	LOC_Os06g09290.2, LOC_Os06g09290.1	GR:0061403			GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0005524 - ATP binding, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0017025 - TATA-binding protein binding, GO:0030433 - ER-associated protein catabolic process, GO:0031595 - nuclear proteasome complex, GO:0031597 - cytosolic proteasome complex		
20554	RPT1B	OsRpt1b, Rpt1b	19S REGULATORY PARTICLE ATPASE SUBUNIT 1B	19S regulatory particle ATPase subunit 1b, RP triple A-ATPase 1b	19S REGULATORY PARTICLE ATPASE SUBUNIT 1B		2	a 19S regulatory particle subunit from the rice 26S proteasome. AU095286, AU031190. AB070252. Q9FXT9. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os02g0784700	LOC_Os02g54340.2, LOC_Os02g54340.1	GR:0061404			GO:0030433 - ER-associated protein catabolic process, GO:0005524 - ATP binding, GO:0017025 - TATA-binding protein binding, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0031595 - nuclear proteasome complex, GO:0031597 - cytosolic proteasome complex, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly		
20555	RPT2B	OsRpt2b, Rpt2b	19S REGULATORY PARTICLE ATPASE SUBUNIT 2B	19S regulatory particle ATPase subunit 2b, RP triple A-ATPase 2b	19S REGULATORY PARTICLE ATPASE SUBUNIT 2B		3	a 19S regulatory particle subunit from the rice 26S proteasome. AU029637, AU029636. AB037154. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os03g0298400	LOC_Os03g18690.1	GR:0061406			GO:0031595 - nuclear proteasome complex, GO:0017025 - TATA-binding protein binding, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0031597 - cytosolic proteasome complex, GO:0008233 - peptidase activity, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0005524 - ATP binding, GO:0030433 - ER-associated protein catabolic process		
20556	RPT3	OsRpt3, Rpt3	19S REGULATORY PARTICLE ATPASE SUBUNIT 3	19S regulatory particle ATPase subunit 3, RP triple A-ATPase 3	19S REGULATORY PARTICLE ATPASE SUBUNIT 3		2	a 19S regulatory particle subunit from the rice 26S proteasome. AU165351, C98650. AB070253. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os02g0325100	LOC_Os02g21970.1				GO:0048767 - root hair elongation, GO:0080129 - proteasome core complex assembly, GO:0051788 - response to misfolded protein, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0043090 - amino acid import, GO:0031597 - cytosolic proteasome complex, GO:0031595 - nuclear proteasome complex, GO:0030433 - ER-associated protein catabolic process, GO:0017025 - TATA-binding protein binding, GO:0016020 - membrane, GO:0009853 - photorespiration, GO:0009735 - response to cytokinin stimulus, GO:0009506 - plasmodesma, GO:0009407 - toxin catabolic process, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0007010 - cytoskeleton organization, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0006635 - fatty acid beta-oxidation, GO:0006094 - gluconeogenesis, GO:0005618 - cell wall, GO:0005524 - ATP binding		
20557	RPT4A	OsRpt4a, Rpt4a	19S REGULATORY PARTICLE ATPASE SUBUNIT 4A	19S regulatory particle ATPase subunit 4a, RP triple A-ATPase 4a	19S REGULATORY PARTICLE ATPASE SUBUNIT 4A		2	a 19S regulatory particle subunit from the rice 26S proteasome. AU165351, C98650. AB070253. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os02g0199900	LOC_Os02g10640.1	GR:0061407			GO:0031597 - cytosolic proteasome complex, GO:0031595 - nuclear proteasome complex, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0005524 - ATP binding, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0017025 - TATA-binding protein binding, GO:0030433 - ER-associated protein catabolic process		
20558	RPT4B	OsRpt4b, Rpt4b	19S REGULATORY PARTICLE ATPASE SUBUNIT 4B	19S regulatory particle ATPase subunit 4b, RP triple A-ATPase 4b	19S REGULATORY PARTICLE ATPASE SUBUNIT 4B		6	a 19S regulatory particle subunit from the rice 26S proteasome. D24881. AB070254. 	 Biochemical character	Os06g0607800	LOC_Os06g40560.1	GR:0061408			GO:0005524 - ATP binding, GO:0030163 - protein catabolic process, GO:0005737 - cytoplasm, GO:0016787 - hydrolase activity, GO:0000502 - proteasome complex		
20559	RPT6	OsRpt6, Rpt6	19S REGULATORY PARTICLE ATPASE SUBUNIT 6	19S regulatory particle ATPase subunit 6, RP triple A-ATPase 6	19S REGULATORY PARTICLE ATPASE SUBUNIT 6		2	a 19S regulatory particle subunit from the rice 26S proteasome. D24184. AB033537. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os02g0205300	LOC_Os02g11050.1				GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0031597 - cytosolic proteasome complex, GO:0005524 - ATP binding, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0017025 - TATA-binding protein binding, GO:0030433 - ER-associated protein catabolic process, GO:0031595 - nuclear proteasome complex		
20560	RPN1A	OsRpn1a, Rpn1a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1A	19S regulatory particle non-ATPase subunit 1a, RP non-ATPase 1a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1A		9	a 19S regulatory particle subunit from the rice 26S proteasome. AU183790, C74601. AB070255. 	 Biochemical character	Os09g0326800	LOC_Os09g15750.1	GR:0061389			GO:0000502 - proteasome complex, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0034515 - proteasome storage granule		
20561	RPN1B	OsRpn1b, Rpn1b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1B	19S regulatory particle non-ATPase subunit 1b, RP non-ATPase 1b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1B		6	a 19S regulatory particle subunit from the rice 26S proteasome. AB070256. 	 Biochemical character	Os06g0699900	LOC_Os06g48640.3, LOC_Os06g48640.2, LOC_Os06g48640.1	GR:0061390			GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0034515 - proteasome storage granule		
20562	RPN2A	OsRpn2a, Rpn2a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2A	19S regulatory particle non-ATPase subunit 2a, RP non-ATPase 2a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2A		8	a 19S regulatory particle subunit from the rice 26S proteasome. C72615. AB070257. 	 Biochemical character	Os08g0224700	LOC_Os08g12820.2, LOC_Os08g12820.1	GR:0061391			GO:0034515 - proteasome storage granule, GO:0016021 - integral to membrane, GO:0005634 - nucleus, GO:0042176 - regulation of protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0030234 - enzyme regulator activity, GO:0000502 - proteasome complex, GO:0008540 - proteasome regulatory particle, base subcomplex		
20563	RPN2B	OsRpn2b, Rpn2b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2B	19S regulatory particle non-ATPase subunit 2b, RP non-ATPase 2b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2B		4	a 19S regulatory particle subunit from the rice 26S proteasome. D22019. 	 Biochemical character	Os04g0608500	LOC_Os04g51910.1	GR:0061392			GO:0016021 - integral to membrane, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0034515 - proteasome storage granule, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0005634 - nucleus		
20564	RPN3	OsRpn3, Rpn3	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 3	19S regulatory particle non-ATPase subunit 3, RP non-ATPase 3	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 3		8	a 19S regulatory particle subunit from the rice 26S proteasome. AU092071, D22137. AB070258. 	 Biochemical character	Os08g0550100	LOC_Os08g43640.3, LOC_Os08g43640.2, LOC_Os08g43640.1	GR:0061393			GO:0000502 - proteasome complex, GO:0030234 - enzyme regulator activity, GO:0042176 - regulation of protein catabolic process		
20565	RPN5	OsRpn5, Rpn5	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 5	19S regulatory particle non-ATPase subunit 5, RP non-ATPase 5	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 5		3	a 19S regulatory particle subunit from the rice 26S proteasome. AU056140, AU056139. AB070259. 	 Biochemical character	Os03g0851300	LOC_Os03g63430.2, LOC_Os03g63430.1	GR:0061394			GO:0031595 - nuclear proteasome complex, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0008541 - proteasome regulatory particle, lid subcomplex, GO:0005737 - cytoplasm		
20566	RPN6	OsRpn6, Rpn6	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 6	19S regulatory particle non-ATPase subunit 6, RP non-ATPase 6	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 6		4	a 19S regulatory particle subunit from the rice 26S proteasome. C98202. AB070260. 	 Biochemical character	Os04g0444600	LOC_Os04g36700.1	GR:0061395			GO:0000502 - proteasome complex		
20567	RPN8	OsRpn8, Rpn8	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 8	19S regulatory particle non-ATPase subunit 8, RP non-ATPase 8	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 8		4	a 19S regulatory particle subunit from the rice 26S proteasome. AB037150. 	 Biochemical character	Os04g0661900	LOC_Os04g56646.1	GR:0061397			GO:0000502 - proteasome complex, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
20568	RPN9A	OsRpn9a, Rpn9a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9A	19S regulatory particle non-ATPase subunit 9a, RP non-ATPase 9a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9A		1	a 19S regulatory particle subunit from the rice 26S proteasome. C96925, C26812. AB070261. 	 Biochemical character	Os01g0511300	LOC_Os01g32800.2, LOC_Os01g32800.1	GR:0061398			GO:0005829 - cytosol, GO:0043248 - proteasome assembly, GO:0008541 - proteasome regulatory particle, lid subcomplex, GO:0000502 - proteasome complex, GO:0005198 - structural molecule activity, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process		
20569	RPN9B	OsRpn9b, Rpn9b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9B	19S regulatory particle non-ATPase subunit 9b, RP non-ATPase 9b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9B		3	a 19S regulatory particle subunit from the rice 26S proteasome. AU031759, D24224. AB070262. 	 Biochemical character	Os03g0214600	LOC_Os03g11570.1	GR:0061399			GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008541 - proteasome regulatory particle, lid subcomplex, GO:0043248 - proteasome assembly, GO:0000502 - proteasome complex, GO:0005198 - structural molecule activity, GO:0005634 - nucleus, GO:0005829 - cytosol		
20570	RPN11	OsRpn11, Rpn11	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 11	19S regulatory particle non-ATPase subunit 11, RP non-ATPase 11	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 11		1	a 19S regulatory particle subunit from the rice 26S proteasome. AU082102. AB037152. 	 Biochemical character	Os01g0267200	LOC_Os01g16190.1	GR:0061401			GO:0000502 - proteasome complex		
20571	RPN12	OsRpn12, Rpn12	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 12	19S regulatory particle non-ATPase subunit 12, RP non-ATPase 12	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 12		7	a 19S regulatory particle subunit from the rice 26S proteasome. AU165469, C72243. AB037153. 	 Biochemical character	Os07g0435100	LOC_Os07g25420.2, LOC_Os07g25420.1	GR:0061402			GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0043248 - proteasome assembly, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0008541 - proteasome regulatory particle, lid subcomplex		
20572	P107-E1		SMALL INTERFERING RNA P107-E1	siRNA P107-E1				P107-E1 has 17 loci on chromosome 1, 2, 3, 4, 7, 8, 9, 11, 12.	 Other			GR:0100929			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence , PO:0009003 - sporophyte , PO:0009025 - vascular leaf 
20573	P88-A6		SMALL INTERFERING RNA P88-A6	siRNA P88-A6			1		 Other			GR:0101083			GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference		PO:0009025 - vascular leaf , PO:0009005 - root , PO:0009003 - sporophyte , PO:0009049 - inflorescence 
20574	P107-G2		SMALL INTERFERING RNA P107-G2	siRNA P107-G2			1		 Other			GR:0100933			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20575	P100-B10		SMALL INTERFERING RNA P100-B10	siRNA P100-B10				P100-B10 has 21 loci on chromosome 1, 10, 11, 12.	 Other			GR:0100887			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20576	P72-A8		SMALL INTERFERING RNA P72-A8	siRNA P72-A8				P72-A8 has 2 loci on chromosome 3, 11.	 Other			GR:0101006			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20577	P83-C9		SMALL INTERFERING RNA P83-C9	siRNA P83-C9				P83-C9 has 17 loci on chromosome 2, 4, 5, 6, 11, 12.	 Other			GR:0101048			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20578	P81-B6		SMALL INTERFERING RNA P81-B6	siRNA P81-B6				P81-B6 has 2 loci on chromosome 1, 6.	 Other			GR:0101038			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0007115 - LP.04 four leaves visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence , PO:0007106 - LP.03 three leaves visible stage , PO:0007094 - LP.01 one leaf visible stage 
20579	P108-F10		SMALL INTERFERING RNA P108-F10	siRNA P108-F10				P108-F10 has 2 loci on chromosome 8, 11.	 Other			GR:0100943			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20580	P7-A4		SMALL INTERFERING RNA P7-A4	siRNA P7-A4			11		 Other			GR:0101034			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009006 - shoot system 
20581	P71-G7		SMALL INTERFERING RNA P71-G7	siRNA P71-G7				P71-G7 has 6 loci on chromosome 1, 3, 4, 7, 11.	 Other			GR:0101004			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20582	P100-D3		SMALL INTERFERING RNA P100-D3	siRNA P100-D3				P100-D3 has 3 loci on chromosome 7, 9.	 Other			GR:0100888			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20583	P100-E1		SMALL INTERFERING RNA P100-E1	siRNA P100-E1			8		 Other			GR:0100889			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20584	P100-F11		SMALL INTERFERING RNA P100-F11	siRNA P100-F11			8		 Other			GR:0100890			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20585	P100-H11		SMALL INTERFERING RNA P100-H11	siRNA P100-H11			11		 Other			GR:0100891			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20586	P101-A9		SMALL INTERFERING RNA P101-A9	siRNA P101-A9			2		 Other			GR:0100892			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20587	P101-B12		SMALL INTERFERING RNA P101-B12	siRNA P101-B12			1		 Other			GR:0100893			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20588	P101-B7		SMALL INTERFERING RNA P101-B7	siRNA P101-B7			5		 Other			GR:0100894			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20589	P101-C11		SMALL INTERFERING RNA P101-C11	siRNA P101-C11			4		 Other			GR:0100895			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20590	P101-G7		SMALL INTERFERING RNA P101-G7	siRNA P101-G7			2		 Other			GR:0100896			GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20591	P101-H2		SMALL INTERFERING RNA P101-H2	siRNA P101-H2			6		 Other			GR:0100897			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20592	P1-02		SMALL INTERFERING RNA P1-02	siRNA P1-02			1		 Other			GR:0100898			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20593	P102-A5		SMALL INTERFERING RNA P102-A5	siRNA P102-A5			1		 Other			GR:0100899			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20594	P102-C12		SMALL INTERFERING RNA P102-C12	siRNA P102-C12				P102-C12 has 2 loci on chromosome 2, 4.	 Other			GR:0100900			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20595	P102-D7		SMALL INTERFERING RNA P102-D7	siRNA P102-D7			1		 Other			GR:0100901			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20596	P102-E6		SMALL INTERFERING RNA P102-E6	siRNA P102-E6			2		 Other			GR:0100902			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20597	P102-F10		SMALL INTERFERING RNA P102-F10	siRNA P102-F10				P102-F10 has 4 loci on chromosome 1, 2, 4, 7.	 Other			GR:0100903			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20598	P102-F11		SMALL INTERFERING RNA P102-F11	siRNA P102-F11			6		 Other			GR:0100904			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20599	P102-F3		SMALL INTERFERING RNA P102-F3	siRNA P102-F3			2		 Other			GR:0100905			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20600	P102-G9		SMALL INTERFERING RNA P102-G9	siRNA P102-G9			7		 Other			GR:0100906			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20601	P103-B2		SMALL INTERFERING RNA P103-B2	siRNA P103-B2				P103-B2 has 10 loci on chromosome 2, 3, 7, 8, 9, 11, 12.	 Other			GR:0100907			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009003 - sporophyte , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
20602	P103-F8		SMALL INTERFERING RNA P103-F8	siRNA P103-F8			6		 Other			GR:0100908			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20603	P103-G3		SMALL INTERFERING RNA P103-G3	siRNA P103-G3				P103-G3 has 5 loci on chromosome 1, 3, 4, 7, 8.	 Other			GR:0100909			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20604	P103-H2		SMALL INTERFERING RNA P103-H2	siRNA P103-H2			12		 Other			GR:0100910			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20605	P104-A10		SMALL INTERFERING RNA P104-A10	siRNA P104-A10				P104-A10 has 11 loci on chromosome 3, 4, 5, 6, 7, 8, 9, 10, 11, 12.	 Other			GR:0100911			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20606	P104-A3		SMALL INTERFERING RNA P104-A3	siRNA P104-A3			1		 Other			GR:0100912			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20607	P104-C7		SMALL INTERFERING RNA P104-C7	siRNA P104-C7			8		 Other			GR:0100913			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20608	P104-C8		SMALL INTERFERING RNA P104-C8	siRNA P104-C8				P104-C8 has 13 loci on chromosome 2, 7, 9, 10, 11, 12.	 Other			GR:0100914			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20609	P104-E2		SMALL INTERFERING RNA P104-E2	siRNA P104-E2			8		 Other			GR:0100915			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20610	P104-F1		SMALL INTERFERING RNA P104-F1	siRNA P104-F1			9		 Other			GR:0100916			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20611	P104-F8		SMALL INTERFERING RNA P104-F8	siRNA P104-F8			7		 Other			GR:0100917			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20612	P104-G7		SMALL INTERFERING RNA P104-G7	siRNA P104-G7				P104-G7 has 20 loci on chromosome 10, 11, 12.	 Other			GR:0100918			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
20613	P105-D8		SMALL INTERFERING RNA P105-D8	siRNA P105-D8			3		 Other			GR:0100919			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20614	P105-E10		SMALL INTERFERING RNA P105-E10	siRNA P105-E10			7		 Other			GR:0100920			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0007106 - LP.03 three leaves visible stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007115 - LP.04 four leaves visible stage 
20615	P105-G11		SMALL INTERFERING RNA P105-G11	siRNA P105-G11			6		 Other			GR:0100921			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20616	P105-H8		SMALL INTERFERING RNA P105-H8	siRNA P105-H8			2		 Other			GR:0100922			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20617	P106-B5		SMALL INTERFERING RNA P106-B5	siRNA P106-B5			8		 Other			GR:0100923			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20618	P106-E12		SMALL INTERFERING RNA P106-E12	siRNA P106-E12			7		 Other			GR:0100924			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20619	P106-F8		SMALL INTERFERING RNA P106-F8	siRNA P106-F8				P106-F8 has 9 loci on chromosome 1, 2, 3, 6, 7.	 Other			GR:0100925			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0007094 - LP.01 one leaf visible stage , PO:0009049 - inflorescence , PO:0007115 - LP.04 four leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007041 - inflorescence emergence stage 
20620	P106-G11		SMALL INTERFERING RNA P106-G11	siRNA P106-G11				P106-G11 has 4 loci on chromosome 1, 5, 10, 11.	 Other			GR:0100926			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20621	P107-A9		SMALL INTERFERING RNA P107-A9	siRNA P107-A9			6		 Other			GR:0100927			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20622	P107-B10		SMALL INTERFERING RNA P107-B10	siRNA P107-B10			12		 Other			GR:0100928			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20623	P107-E2		SMALL INTERFERING RNA P107-E2	siRNA P107-E2				P107-E2 has 13 loci on chromosome 8, 9, 10, 11, 12.	 Other			GR:0100930			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20624	P107-F1		SMALL INTERFERING RNA P107-F1	siRNA P107-F1			6		 Other			GR:0100931			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20625	P107-F10		SMALL INTERFERING RNA P107-F10	siRNA P107-F10			5		 Other			GR:0100932			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0009049 - inflorescence , PO:0007115 - LP.04 four leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007098 - LP.02 two leaves visible stage 
20626	P107-H11		SMALL INTERFERING RNA P107-H11	siRNA P107-H11			8		 Other			GR:0100934			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20627	P107-H12		SMALL INTERFERING RNA P107-H12	siRNA P107-H12			11		 Other			GR:0100935			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20628	P107-H3		SMALL INTERFERING RNA P107-H3	siRNA P107-H3				P107-H3 has 2 loci on chromosome 1, 5.	 Other			GR:0100936			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0007115 - LP.04 four leaves visible stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage 
20629	P108-A5		SMALL INTERFERING RNA P108-A5	siRNA P108-A5				P108-A5 has 4 loci on chromosome 1, 3, 8.	 Other			GR:0100937			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20630	P108-A7		SMALL INTERFERING RNA P108-A7	siRNA P108-A7			1		 Other			GR:0100938			GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence 
20631	P108-B2		SMALL INTERFERING RNA P108-B2	siRNA P108-B2			7		 Other			GR:0100939			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20632	P108-B7		SMALL INTERFERING RNA P108-B7	siRNA P108-B7			4		 Other			GR:0100940			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20633	P108-D1		SMALL INTERFERING RNA P108-D1	siRNA P108-D1			1		 Other			GR:0100941			GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20634	P108-D3		SMALL INTERFERING RNA P108-D3	siRNA P108-D3				P108-D3 has 20 loci on chromosome 3, 5, 6, 8, 9, 10, 11, 12.	 Other			GR:0100942			GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009005 - root 
20635	P108-F5		SMALL INTERFERING RNA P108-F5	siRNA P108-F5			11		 Other			GR:0100944			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20636	P108-G3		SMALL INTERFERING RNA P108-G3	siRNA P108-G3			11		 Other			GR:0100945			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20637	P108-H10		SMALL INTERFERING RNA P108-H10	siRNA P108-H10				P108-H10 has 4 loci on chromosome 3, 6, 12.	 Other			GR:0100946			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20638	P108-H5		SMALL INTERFERING RNA P108-H5	siRNA P108-H5				P108-H5 has 2 loci on chromosome 7, 11.	 Other			GR:0100947			GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence , PO:0007098 - LP.02 two leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007041 - inflorescence emergence stage , PO:0007106 - LP.03 three leaves visible stage 
20639	P109-A11		SMALL INTERFERING RNA P109-A11	siRNA P109-A11			4		 Other			GR:0100948			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20640	P109-C6		SMALL INTERFERING RNA P109-C6	siRNA P109-C6			12		 Other			GR:0100949			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20641	P109-D12		SMALL INTERFERING RNA P109-D12	siRNA P109-D12			11	P109-D12 has 2 loci on chromosome 11.	 Other			GR:0100950			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20642	P109-E3		SMALL INTERFERING RNA P109-E3	siRNA P109-E3			2		 Other			GR:0100951			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20643	P109-F3		SMALL INTERFERING RNA P109-F3	siRNA P109-F3			11		 Other			GR:0100952			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20644	P15-A5		SMALL INTERFERING RNA P15-A5	siRNA P15-A5			12	P15-A5 has 20 loci on chromosome 12.	 Other			GR:0100953			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20645	P15-D7		SMALL INTERFERING RNA P15-D7	siRNA P15-D7			6		 Other			GR:0100954			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20646	P15-E7		SMALL INTERFERING RNA P15-E7	siRNA P15-E7			10		 Other			GR:0100955			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system , PO:0007041 - inflorescence emergence stage 
20647	P15-F8		SMALL INTERFERING RNA P15-F8	siRNA P15-F8				P15-F8 has 2 loci on chromosome 1, 6.	 Other			GR:0100956			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20648	P16-C3		SMALL INTERFERING RNA P16-C3	siRNA P16-C3				P16-C3 has 21 loci on chromosome 7, 8, 9, 10, 11, 12.	 Other			GR:0100957			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009003 - sporophyte , PO:0009006 - shoot system , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
20649	P16-G8		SMALL INTERFERING RNA P16-G8	siRNA P16-G8			11	P16-G8 has  loci on chromosome 11.	 Other			GR:0100958			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20650	P17-F4		SMALL INTERFERING RNA P17-F4	siRNA P17-F4			6		 Other			GR:0100959			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20651	P18-F10		SMALL INTERFERING RNA P18-F10	siRNA P18-F10			10		 Other			GR:0100960			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20652	P1-B06		SMALL INTERFERING RNA P1-B06	siRNA P1-B06				P1-B06 has 7 loci on chromosome 3, 4, 7, 8, 11, 12.	 Other			GR:0100961			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20653	P1-C04		SMALL INTERFERING RNA P1-C04	siRNA P1-C04				P1-C04 has 20 loci on chromosome 10, 11, 12.	 Other			GR:0100962			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20654	P20-G5		SMALL INTERFERING RNA P20-G5	siRNA P20-G5			2		 Other			GR:0100963			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20655	P26-B8		SMALL INTERFERING RNA P26-B8	siRNA P26-B8			1		 Other			GR:0100964			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20656	P28-E3		SMALL INTERFERING RNA P28-E3	siRNA P28-E3				P28-E3 has 9 loci on chromosome 1, 6, 7, 8, 9, 10.	 Other			GR:0100965			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009006 - shoot system 
20657	P29-A12		SMALL INTERFERING RNA P29-A12	siRNA P29-A12			3		 Other			GR:0100966			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20658	P30-A8		SMALL INTERFERING RNA P30-A8	siRNA P30-A8			3		 Other			GR:0100967			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20659	P30-G4		SMALL INTERFERING RNA P30-G4	siRNA P30-G4			2		 Other			GR:0100968			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20660	P30-G6		SMALL INTERFERING RNA P30-G6	siRNA P30-G6			11		 Other			GR:0100969			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0007098 - LP.02 two leaves visible stage , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0009006 - shoot system 
20661	P31-G9		SMALL INTERFERING RNA P31-G9	siRNA P31-G9				P31-G9 has 7 loci on chromosome 2, 6, 7, 8, 12.	 Other			GR:0100970			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20662	P33-A2		SMALL INTERFERING RNA P33-A2	siRNA P33-A2			7		 Other			GR:0100971			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20663	P33-D12		SMALL INTERFERING RNA P33-D12	siRNA P33-D12			5		 Other			GR:0100972			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20664	P33-G4		SMALL INTERFERING RNA P33-G4	siRNA P33-G4			3		 Other			GR:0100973			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20665	P33-H10		SMALL INTERFERING RNA P33-H10	siRNA P33-H10			2		 Other			GR:0100974			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20666	P34-A10		SMALL INTERFERING RNA P34-A10	siRNA P34-A10			2		 Other			GR:0100975			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009005 - root 
20667	P35-D10		SMALL INTERFERING RNA P35-D10	siRNA P35-D10			9		 Other			GR:0100976			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009005 - root , PO:0009049 - inflorescence , PO:0009003 - sporophyte 
20668	P38-B7		SMALL INTERFERING RNA P38-B7	siRNA P38-B7			2		 Other			GR:0100977			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009005 - root 
20669	P40-D12		SMALL INTERFERING RNA P40-D12	siRNA P40-D12			8		 Other			GR:0100978			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009005 - root 
20670	P40-H12		SMALL INTERFERING RNA P40-H12	siRNA P40-H12				P40-H12 has 17 loci on chromosome 3, 5, 6, 7, 9, 10, 11, 12.	 Other			GR:0100979			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009005 - root , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0009003 - sporophyte 
20671	P46-C11		SMALL INTERFERING RNA P46-C11	siRNA P46-C11			6		 Other			GR:0100980			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009005 - root 
20672	P49-E4		SMALL INTERFERING RNA P49-E4	siRNA P49-E4				P49-E4 has 2 loci on chromosome 1, 5.	 Other			GR:0100981			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009005 - root 
20673	P4-D6		SMALL INTERFERING RNA P4-D6	siRNA P4-D6			3		 Other			GR:0100982			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009003 - sporophyte , PO:0009005 - root 
20674	P4-G9		SMALL INTERFERING RNA P4-G9	siRNA P4-G9			11		 Other			GR:0100983			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20675	P50-B5		SMALL INTERFERING RNA P50-B5	siRNA P50-B5			5		 Other			GR:0100984			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009005 - root 
20676	P52-C8		SMALL INTERFERING RNA P52-C8	siRNA P52-C8			5		 Other			GR:0100985			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009005 - root 
20677	P56-B2		SMALL INTERFERING RNA P56-B2	siRNA P56-B2			6		 Other			GR:0100986			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20678	P56-D5		SMALL INTERFERING RNA P56-D5	siRNA P56-D5			1		 Other			GR:0100987			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20679	P56-E5		SMALL INTERFERING RNA P56-E5	siRNA P56-E5			6	P56-E5 has 2 loci on chromosome 6.	 Other			GR:0100988			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20680	P56-H4		SMALL INTERFERING RNA P56-H4	siRNA P56-H4				P56-H4 has 4 loci on chromosome 1, 2, 6.	 Other			GR:0100989			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009003 - sporophyte , PO:0009049 - inflorescence , PO:0009005 - root 
20681	P5-B6		SMALL INTERFERING RNA P5-B6	siRNA P5-B6			12		 Other			GR:0100990			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20682	P5-C5		SMALL INTERFERING RNA P5-C5	siRNA P5-C5			2		 Other			GR:0100991			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20683	P5-D6		SMALL INTERFERING RNA P5-D6	siRNA P5-D6			3		 Other			GR:0100992			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20684	P60-F7		SMALL INTERFERING RNA P60-F7	siRNA P60-F7				P60-F7 has 20 loci on chromosome 9, 11, 12.	 Other			GR:0100993			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence 
20685	P61-A1		SMALL INTERFERING RNA P61-A1	siRNA P61-A1			7		 Other			GR:0100994			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20686	P63-A8		SMALL INTERFERING RNA P63-A8	siRNA P63-A8				P63-A8 has 2 loci on chromosome 5, 8.	 Other			GR:0100995			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20687	P63-E1		SMALL INTERFERING RNA P63-E1	siRNA P63-E1				P63-E1 has 11 loci on chromosome 3, 5, 8, 9, 10, 11, 12.	 Other			GR:0100996			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20688	P63-G7		SMALL INTERFERING RNA P63-G7	siRNA P63-G7			4		 Other			GR:0100997			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage 
20689	P65-B8		SMALL INTERFERING RNA P65-B8	siRNA P65-B8			2		 Other			GR:0100998			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20690	P66-B12		SMALL INTERFERING RNA P66-B12	siRNA P66-B12			4		 Other			GR:0100999			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20691	P67-B5		SMALL INTERFERING RNA P67-B5	siRNA P67-B5			4		 Other			GR:0101000			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20692	P68-H2		SMALL INTERFERING RNA P68-H2	siRNA P68-H2			8		 Other			GR:0101001			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20693	P6-A9		SMALL INTERFERING RNA P6-A9	siRNA P6-A9			6		 Other			GR:0101002			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009025 - vascular leaf , PO:0009006 - shoot system 
20694	P70-D1		SMALL INTERFERING RNA P70-D1	siRNA P70-D1			7		 Other			GR:0101003			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20695	P71-H12		SMALL INTERFERING RNA P71-H12	siRNA P71-H12			5		 Other			GR:0101005			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20696	P72-E1		SMALL INTERFERING RNA P72-E1	siRNA P72-E1			1		 Other			GR:0101007			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20697	P72-E12		SMALL INTERFERING RNA P72-E12	siRNA P72-E12				P72-E12 has 21 loci on chromosome 8, 9, 11, 12.	 Other			GR:0101008			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20698	P72-F7		SMALL INTERFERING RNA P72-F7	siRNA P72-F7			6		 Other			GR:0101009			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20699	P72-G12		SMALL INTERFERING RNA P72-G12	siRNA P72-G12			4		 Other			GR:0101010			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20700	P72-H3		SMALL INTERFERING RNA P72-H3	siRNA P72-H3			6		 Other			GR:0101011			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20701	P72-H5		SMALL INTERFERING RNA P72-H5	siRNA P72-H5			2		 Other			GR:0101012			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20702	P75-C1		SMALL INTERFERING RNA P75-C1	siRNA P75-C1				P75-C1 has 2 loci on chromosome 2, 12.	 Other			GR:0101013			GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20703	P75-D3		SMALL INTERFERING RNA P75-D3	siRNA P75-D3				P75-D3 has 4 loci on chromosome 1, 6, 8.	 Other			GR:0101014			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20704	P76-B12		SMALL INTERFERING RNA P76-B12	siRNA P76-B12			10		 Other			GR:0101015			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20705	P76-D11		SMALL INTERFERING RNA P76-D11	siRNA P76-D11			3		 Other			GR:0101016			GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20706	P76-G8		SMALL INTERFERING RNA P76-G8	siRNA P76-G8			4		 Other			GR:0101017			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20707	P76-H3		SMALL INTERFERING RNA P76-H3	siRNA P76-H3			5		 Other			GR:0101018			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20708	P77-B10		SMALL INTERFERING RNA P77-B10	siRNA P77-B10			12		 Other			GR:0101019			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20709	P77-C11		SMALL INTERFERING RNA P77-C11	siRNA P77-C11			10		 Other			GR:0101020			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20710	P77-C12		SMALL INTERFERING RNA P77-C12	siRNA P77-C12			6		 Other			GR:0101021			GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20711	P77-D6		SMALL INTERFERING RNA P77-D6	siRNA P77-D6			1		 Other			GR:0101022			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20712	P77-F8		SMALL INTERFERING RNA P77-F8	siRNA P77-F8				P77-F8 has 21 loci on chromosome 3, 4, 5, 6, 7, 8, 9, 10, 11, 12.	 Other			GR:0101023			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20713	P77-G8		SMALL INTERFERING RNA P77-G8	siRNA P77-G8			2		 Other			GR:0101024			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20714	P77-H6		SMALL INTERFERING RNA P77-H6	siRNA P77-H6			12		 Other			GR:0101025			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20715	P78-C6		SMALL INTERFERING RNA P78-C6	siRNA P78-C6			4		 Other			GR:0101026			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20716	P78-E8		SMALL INTERFERING RNA P78-E8	siRNA P78-E8				P78-E8 has 2 loci on chromosome 11, 12.	 Other			GR:0101027			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20717	P79-B1		SMALL INTERFERING RNA P79-B1	siRNA P79-B1			1		 Other			GR:0101028			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20718	P79-D15		SMALL INTERFERING RNA P79-D15	siRNA P79-D15			1	P79-D15 has 3 loci on chromosome 1.	 Other			GR:0101029			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20719	P79-E1		SMALL INTERFERING RNA P79-E1	siRNA P79-E1				P79-E1  has 17 loci on chromosome 3, 4, 6, 7, 8, 9, 10, 11, 12.	 Other			GR:0101030			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence 
20720	P79-E11		SMALL INTERFERING RNA P79-E11	siRNA P79-E11			7		 Other			GR:0101031			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20721	P79-E7		SMALL INTERFERING RNA P79-E7	siRNA P79-E7			9		 Other			GR:0101032			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20722	P79-H4		SMALL INTERFERING RNA P79-H4	siRNA P79-H4				P79-H4 has 17 loci on chromosome 1, 2, 8, 9, 10, 11, 12.	 Other			GR:0101033			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20723	P7-E5		SMALL INTERFERING RNA P7-E5	siRNA P7-E5			12		 Other			GR:0101035			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20724	P80-B3		SMALL INTERFERING RNA P80-B3	siRNA P80-B3			4		 Other			GR:0101036			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20725	P81-B3		SMALL INTERFERING RNA P81-B3	siRNA P81-B3			3		 Other			GR:0101037			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20726	P81-C7		SMALL INTERFERING RNA P81-C7	siRNA P81-C7			10	P81-C7 has 2 loci on chromosome 10.	 Other			GR:0101039			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20727	P81-F4		SMALL INTERFERING RNA P81-F4	siRNA P81-F4				P81-F4 has 9 loci on chromosome 1, 2, 3, 6, 7, 9.	 Other			GR:0101040			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20728	P81-G1		SMALL INTERFERING RNA P81-G1	siRNA P81-G1			1		 Other			GR:0101041			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20729	P81-G4		SMALL INTERFERING RNA P81-G4	siRNA P81-G4			10		 Other			GR:0101042			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20730	P81-H7		SMALL INTERFERING RNA P81-H7	siRNA P81-H7			12		 Other			GR:0101043			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20731	P82-E5		SMALL INTERFERING RNA P82-E5	siRNA P82-E5				P82-E5 has 14 loci on chromosome 3, 8, 9, 10, 11, 12.	 Other			GR:0101044			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20732	P82-F7		SMALL INTERFERING RNA P82-F7	siRNA P82-F7			5		 Other			GR:0101045			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20733	P83-A5		SMALL INTERFERING RNA P83-A5	siRNA P83-A5			12		 Other			GR:0101046			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20734	P83-B2		SMALL INTERFERING RNA P83-B2	siRNA P83-B2			2		 Other			GR:0101047			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20735	P83-D4		SMALL INTERFERING RNA P83-D4	siRNA P83-D4			12		 Other			GR:0101049			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0007106 - LP.03 three leaves visible stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007115 - LP.04 four leaves visible stage 
20736	P83-D5		SMALL INTERFERING RNA P83-D5	siRNA P83-D5			12		 Other			GR:0101050			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20737	P83-G5		SMALL INTERFERING RNA P83-G5	siRNA P83-G5				P83-G5 has 9 loci on chromosome 1, 3, 6, 10, 11, 12.	 Other			GR:0101051			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20738	P83-H10		SMALL INTERFERING RNA P83-H10	siRNA P83-H10			10		 Other			GR:0101052			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20739	P83-H4		SMALL INTERFERING RNA P83-H4	siRNA P83-H4				P83-H4 has 3 loci on chromosome 2, 6, 12.	 Other			GR:0101053			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20740	P84-C2		SMALL INTERFERING RNA P84-C2	siRNA P84-C2				P84-C2 has 2 loci on chromosome 1, 11.	 Other			GR:0101054			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20741	P84-D12		SMALL INTERFERING RNA P84-D12	siRNA P84-D12			11		 Other			GR:0101055			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20742	P84-F11		SMALL INTERFERING RNA P84-F11	siRNA P84-F11				P84-F11 has 4 loci on chromosome 3, 5, 9.	 Other			GR:0101056			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20743	P84-H3		SMALL INTERFERING RNA P84-H3	siRNA P84-H3			6		 Other			GR:0101057			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20744	P84-H4		SMALL INTERFERING RNA P84-H4	siRNA P84-H4			2		 Other			GR:0101058			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20745	P84-H5		SMALL INTERFERING RNA P84-H5	siRNA P84-H5			6		 Other			GR:0101059			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20746	P84-H6		SMALL INTERFERING RNA P84-H6	siRNA P84-H6			5		 Other			GR:0101060			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20747	P85-B1		SMALL INTERFERING RNA P85-B1	siRNA P85-B1				P85-B1 has 6 loci on chromosome 1, 2, 8, 12.	 Other			GR:0101061			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20748	P85-B12		SMALL INTERFERING RNA P85-B12	siRNA P85-B12			7		 Other			GR:0101062			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20749	P85-B2		SMALL INTERFERING RNA P85-B2	siRNA P85-B2			6	P85-B2 has 2 loci on chromosome 6.	 Other			GR:0101063			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20750	P85-B9		SMALL INTERFERING RNA P85-B9	siRNA P85-B9			11		 Other			GR:0101064			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20751	P85-C7		SMALL INTERFERING RNA P85-C7	siRNA P85-C7			12		 Other			GR:0101065			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20752	P85-D8		SMALL INTERFERING RNA P85-D8	siRNA P85-D8			10		 Other			GR:0101066			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20753	P85-F2		SMALL INTERFERING RNA P85-F2	siRNA P85-F2			4	P85-F2 has 2 loci on chromosome 4.	 Other			GR:0101067			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20754	P85-F8		SMALL INTERFERING RNA P85-F8	siRNA P85-F8			3		 Other			GR:0101068			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20755	P86-A3		SMALL INTERFERING RNA P86-A3	siRNA P86-A3				P86-A3 has 4 loci on chromosome 4, 6, 10.	 Other			GR:0101069			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20756	P86-D6		SMALL INTERFERING RNA P86-D6	siRNA P86-D6			5		 Other			GR:0101070			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20757	P86-E3		SMALL INTERFERING RNA P86-E3	siRNA P86-E3			2		 Other			GR:0101071			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20758	P86-E8		SMALL INTERFERING RNA P86-E8	siRNA P86-E8			5		 Other			GR:0101072			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20759	P86-F9		SMALL INTERFERING RNA P86-F9	siRNA P86-F9				P86-F9 has 2 loci on chromosome 11, 12.	 Other			GR:0101073			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20760	P86-G10		SMALL INTERFERING RNA P86-G10	siRNA P86-G10				P86-G10 has 4 loci on chromosome , 2, 3, 4, 11.	 Other			GR:0101074			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20761	P86-H10		SMALL INTERFERING RNA P86-H10	siRNA P86-H10			8		 Other			GR:0101075			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009005 - root , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009003 - sporophyte 
20762	P87-A3		SMALL INTERFERING RNA P87-A3	siRNA P87-A3			12		 Other			GR:0101076			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage 
20763	P87-B1		SMALL INTERFERING RNA P87-B1	siRNA P87-B1			2		 Other			GR:0101077			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20764	P87-C2		SMALL INTERFERING RNA P87-C2	siRNA P87-C2			7		 Other			GR:0101078			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20765	P87-C5		SMALL INTERFERING RNA P87-C5	siRNA P87-C5			1		 Other			GR:0101079			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage 
20766	P87-G9		SMALL INTERFERING RNA P87-G9	siRNA P87-G9			6		 Other			GR:0101080			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20767	P87-H6		SMALL INTERFERING RNA P87-H6	siRNA P87-H6			3		 Other			GR:0101081			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20768	P88-A11		SMALL INTERFERING RNA P88-A11	siRNA P88-A11				P88-A11 has 13 loci on chromosome 3, 4, 10, 11, 12.	 Other			GR:0101082			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence , PO:0009003 - sporophyte 
20769	P88-B4		SMALL INTERFERING RNA P88-B4	siRNA P88-B4			12		 Other			GR:0101084			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20770	P88-C3		SMALL INTERFERING RNA P88-C3	siRNA P88-C3			1		 Other			GR:0101085			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20771	P88-F10		SMALL INTERFERING RNA P88-F10	siRNA P88-F10			12		 Other			GR:0101086			GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20772	P88-F11		SMALL INTERFERING RNA P88-F11	siRNA P88-F11			11		 Other			GR:0101087			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20773	P88-H6		SMALL INTERFERING RNA P88-H6	siRNA P88-H6			4		 Other			GR:0101088			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20774	P89-B12		SMALL INTERFERING RNA P89-B12	siRNA P89-B12			2		 Other			GR:0101089			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20775	P89-B2		SMALL INTERFERING RNA P89-B2	siRNA P89-B2				P89-B2 has 10 loci on chromosome 1, 2, 3, 5, 6.	 Other			GR:0101090			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference		PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007041 - inflorescence emergence stage , PO:0007115 - LP.04 four leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0009049 - inflorescence 
20776	P89-C3		SMALL INTERFERING RNA P89-C3	siRNA P89-C3			10		 Other			GR:0101091			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20777	P89-D4		SMALL INTERFERING RNA P89-D4	siRNA P89-D4			5		 Other			GR:0101092			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20778	P89-E12		SMALL INTERFERING RNA P89-E12	siRNA P89-E12				P89-E12 has 2 loci on chromosome 10.	 Other			GR:0101093			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20779	P89-E2		SMALL INTERFERING RNA P89-E2	siRNA P89-E2			7		 Other			GR:0101094			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20780	P89-E6		SMALL INTERFERING RNA P89-E6	siRNA P89-E6				P89-E6 has 2 loci on chromosome 1, 2.	 Other			GR:0101095			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20781	P89-F12		SMALL INTERFERING RNA P89-F12	siRNA P89-F12			9		 Other			GR:0101096			GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20782	P89-F6		SMALL INTERFERING RNA P89-F6	siRNA P89-F6			10		 Other			GR:0101097			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20783	P89-G12		SMALL INTERFERING RNA P89-G12	siRNA P89-G12			1		 Other			GR:0101098			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009005 - root , PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
20784	P89-G8		SMALL INTERFERING RNA P89-G8	siRNA P89-G8			2		 Other			GR:0101099			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation		PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence 
20785	P89-H1		SMALL INTERFERING RNA P89-H1	siRNA P89-H1			5		 Other			GR:0101100			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20786	P89-H4		SMALL INTERFERING RNA P89-H4	siRNA P89-H4			6		 Other			GR:0101101			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20787	P89-H6		SMALL INTERFERING RNA P89-H6	siRNA P89-H6			12		 Other			GR:0101102			GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20788	P8-C12		SMALL INTERFERING RNA P8-C12	siRNA P8-C12			1		 Other			GR:0101103			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20789	P8-E2		SMALL INTERFERING RNA P8-E2	siRNA P8-E2			11		 Other			GR:0101104			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009006 - shoot system , PO:0009049 - inflorescence , PO:0009003 - sporophyte , PO:0009025 - vascular leaf , PO:0009005 - root 
20790	P8-F8		SMALL INTERFERING RNA P8-F8	siRNA P8-F8				P8-F8 has 10 loci on chromosome 4, 5, 6, 7, 8, 10.	 Other			GR:0101105			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20791	P8-G3		SMALL INTERFERING RNA P8-G3	siRNA P8-G3				P8-G3 has 5 loci on chromosome 1, 4, 6, 10, 12.	 Other			GR:0101106			GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20792	P90-A12		SMALL INTERFERING RNA P90-A12	siRNA P90-A12			11		 Other			GR:0101107			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20793	P90-A5		SMALL INTERFERING RNA P90-A5	siRNA P90-A5			6		 Other			GR:0101108			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20794	P90-B6		SMALL INTERFERING RNA P90-B6	siRNA P90-B6				P90-B6 has 13 loci on chromosome 2, 4, 5, 7, 8, 9, 12.	 Other			GR:0101109			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20795	P90-B8		SMALL INTERFERING RNA P90-B8	siRNA P90-B8				P90-B8 has 12 loci on chromosome 10, 11, 12.	 Other			GR:0101110			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20796	P90-B9		SMALL INTERFERING RNA P90-B9	siRNA P90-B9			4		 Other			GR:0101111			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20797	P91-A1		SMALL INTERFERING RNA P91-A1	siRNA P91-A1				P91-A1 has 2 loci on chromosome 3, 7.	 Other			GR:0101112			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20798	P91-A11		SMALL INTERFERING RNA P91-A11	siRNA P91-A11			11		 Other			GR:0101113			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0006306 - DNA methylation		PO:0009005 - root , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009003 - sporophyte 
20799	P91-A5		SMALL INTERFERING RNA P91-A5	siRNA P91-A5				P91-A5 has 14 loci on chromosome 2, 3, 4, 5, 7, 8, 9, 10, 11.	 Other			GR:0101114			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20800	P91-C7		SMALL INTERFERING RNA P91-C7	siRNA P91-C7			1		 Other			GR:0101115			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20801	P91-D8		SMALL INTERFERING RNA P91-D8	siRNA P91-D8			5		 Other			GR:0101116			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20802	P91-D9		SMALL INTERFERING RNA P91-D9	siRNA P91-D9			6		 Other			GR:0101117			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20803	P91-E11		SMALL INTERFERING RNA P91-E11	siRNA P91-E11			2		 Other			GR:0101118			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20804	P91-E4		SMALL INTERFERING RNA P91-E4	siRNA P91-E4			10		 Other			GR:0101119			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20805	P91-F12		SMALL INTERFERING RNA P91-F12	siRNA P91-F12			9	P91-F12 has 2 loci on chromosome 9.	 Other			GR:0101120			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20806	P91-H7		SMALL INTERFERING RNA P91-H7	siRNA P91-H7			2		 Other			GR:0101121			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20807	P92-A3		SMALL INTERFERING RNA P92-A3	siRNA P92-A3			6		 Other			GR:0101122			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20808	P92-A9		SMALL INTERFERING RNA P92-A9	siRNA P92-A9			11		 Other			GR:0101123			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20809	P92-C3		SMALL INTERFERING RNA P92-C3	siRNA P92-C3			11		 Other			GR:0101124			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20810	P93-A5		SMALL INTERFERING RNA P93-A5	siRNA P93-A5				P93-A5 has 3 loci on chromosome 2, 3, 12.	 Other			GR:0101125			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20811	P93-C6		SMALL INTERFERING RNA P93-C6	siRNA P93-C6			6		 Other			GR:0101126			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20812	P93-D6		SMALL INTERFERING RNA P93-D6	siRNA P93-D6			1		 Other			GR:0101127			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20813	P93-G6		SMALL INTERFERING RNA P93-G6	siRNA P93-G6			7		 Other			GR:0101128			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20814	P93-H6		SMALL INTERFERING RNA P93-H6	siRNA P93-H6			2		 Other			GR:0101129			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20815	P94-A5		SMALL INTERFERING RNA P94-A5	siRNA P94-A5			3	P94-A5 has 2 loci on chromosome 3.	 Other			GR:0101130			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20816	P94-D12		SMALL INTERFERING RNA P94-D12	siRNA P94-D12			1	P94-D12 has 2 loci on chromosome 1.	 Other			GR:0101131			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20817	P94-E8		SMALL INTERFERING RNA P94-E8	siRNA P94-E8			9		 Other			GR:0101132			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20818	P94-G1		SMALL INTERFERING RNA P94-G1	siRNA P94-G1			5		 Other			GR:0101133			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20819	P95-D12		SMALL INTERFERING RNA P95-D12	siRNA P95-D12				P95-D12 has 3 loci on chromosome 1, 5, 12.	 Other			GR:0101134			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20820	P95-D5		SMALL INTERFERING RNA P95-D5	siRNA P95-D5			7		 Other			GR:0101135			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20821	P95-E5		SMALL INTERFERING RNA P95-E5	siRNA P95-E5				P95-E5 has 6 loci on chromosome 5, 6, 7, 8.	 Other			GR:0101136			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20822	P96-A3		SMALL INTERFERING RNA P96-A3	siRNA P96-A3			4		 Other			GR:0101137			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20823	P96-B3		SMALL INTERFERING RNA P96-B3	siRNA P96-B3			6		 Other			GR:0101138			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20824	P96-B9		SMALL INTERFERING RNA P96-B9	siRNA P96-B9			7		 Other			GR:0101139			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20825	P96-C4		SMALL INTERFERING RNA P96-C4	siRNA P96-C4			10		 Other			GR:0101140			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20826	P96-C9		SMALL INTERFERING RNA P96-C9	siRNA P96-C9			4		 Other			GR:0101141			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20827	P96-E12		SMALL INTERFERING RNA P96-E12	siRNA P96-E12				P96-E12 has 20 loci on chromosome 7, 8, 9, 10, 11, 12.	 Other			GR:0101142			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0009025 - vascular leaf 
20828	P96-F7		SMALL INTERFERING RNA P96-F7	siRNA P96-F7			5		 Other			GR:0101143			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20829	P96-H6		SMALL INTERFERING RNA P96-H6	siRNA P96-H6			5		 Other			GR:0101144			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20830	P97-A1		SMALL INTERFERING RNA P97-A1	siRNA P97-A1				P97-A1 has 10 loci on chromosome 1, 4, 5, 6, 8, 9, 11.	 Other			GR:0101145			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20831	P97-B2		SMALL INTERFERING RNA P97-B2	siRNA P97-B2			3		 Other			GR:0101146			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20832	P97-B5		SMALL INTERFERING RNA P97-B5	siRNA P97-B5			2		 Other			GR:0101147			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20833	P97-D1		SMALL INTERFERING RNA P97-D1	siRNA P97-D1			6		 Other			GR:0101148			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20834	P97-E3		SMALL INTERFERING RNA P97-E3	siRNA P97-E3			6	P97-E3 has 4 loci on chromosome 6.	 Other			GR:0101149			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20835	P97-E9		SMALL INTERFERING RNA P97-E9	siRNA P97-E9			8		 Other			GR:0101150			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20836	P97-F12		SMALL INTERFERING RNA P97-F12	siRNA P97-F12			1		 Other			GR:0101151			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20837	P97-F4		SMALL INTERFERING RNA P97-F4	siRNA P97-F4				P97-F4 has 6 loci on chromosome 3, 4, 5, 7, 11.	 Other			GR:0101152			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20838	P98-A8		SMALL INTERFERING RNA P98-A8	siRNA P98-A8			4		 Other			GR:0101153			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20839	P98-A9		SMALL INTERFERING RNA P98-A9	siRNA P98-A9				P98-A9 has 6 loci on chromosome 2, 4, 6, 8, 9, 12.	 Other			GR:0101154			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009003 - sporophyte , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
20840	P98-B9		SMALL INTERFERING RNA P98-B9	siRNA P98-B9			1		 Other			GR:0101155			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20841	P98-D2		SMALL INTERFERING RNA P98-D2	siRNA P98-D2				P98-D2 has 16 loci on chromosome 1, 2, 3, 4, 5, 6, 8, 10.	 Other			GR:0101156			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20842	P98-G12		SMALL INTERFERING RNA P98-G12	siRNA P98-G12				P98-G12 has 15 loci on chromosome 1, 6, 7, 8, 9, 10, 11, 12.	 Other			GR:0101157			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20843	P98-G5		SMALL INTERFERING RNA P98-G5	siRNA P98-G5				P98-G5 has 8 loci on chromosome 6, 7, 9, 11, 12.	 Other			GR:0101158			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20844	P98-G6		SMALL INTERFERING RNA P98-G6	siRNA P98-G6			11		 Other			GR:0101159			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20845	P99-A2		SMALL INTERFERING RNA P99-A2	siRNA P99-A2			1		 Other			GR:0101160			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20846	P99-B3		SMALL INTERFERING RNA P99-B3	siRNA P99-B3				P99-B3 has 3 loci on chromosome 1, 4, 6.	 Other			GR:0101161			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20847	P99-B4		SMALL INTERFERING RNA P99-B4	siRNA P99-B4			1		 Other			GR:0101162			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20848	P99-C8		SMALL INTERFERING RNA P99-C8	siRNA P99-C8			3		 Other			GR:0101163			GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20849	P99-D11		SMALL INTERFERING RNA P99-D11	siRNA P99-D11			11		 Other			GR:0101164			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20850	P99-F3		SMALL INTERFERING RNA P99-F3	siRNA P99-F3			10		 Other			GR:0101165			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0007041 - inflorescence emergence stage , PO:0007115 - LP.04 four leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007094 - LP.01 one leaf visible stage , PO:0009049 - inflorescence 
20851	P99-G11		SMALL INTERFERING RNA P99-G11	siRNA P99-G11			3		 Other			GR:0101166			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20852	P99-H3		SMALL INTERFERING RNA P99-H3	siRNA P99-H3			11		 Other			GR:0101167			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20853	P99-H8		SMALL INTERFERING RNA P99-H8	siRNA P99-H8			8		 Other			GR:0101168			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20854	P9-F11		SMALL INTERFERING RNA P9-F11	siRNA P9-F11			7		 Other			GR:0101169			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0005634 - nucleus		PO:0009006 - shoot system 
20855	P9-G1		SMALL INTERFERING RNA P9-G1	siRNA P9-G1			5		 Other			GR:0101170			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20856	GC	Gc	_				1	a single dominant gene. The genetic distances on the short arm of rice chromosome 1 between Gc and rm6464, rm6340 and rm462 were 0, 0.588 and 1.18 cM, respectively (Zheng 2008).	 Coloration - Chlorophyll,  Character as QTL - Yield and productivity			GR:0101190				TO:0000495 - chlorophyll content, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000396 - grain yield, TO:0001015 - photosynthetic rate	
20857	NADH-NR		NADH-NITRATE REDUCTASE	NADH-nitrate reductase	NADH-NITRATE REDUCTASE			a single recessive nuclear gene. a nia-type mutant. Chlorate resistance in M819 was transmitted by a single recessive nuclear gene. The mutant line M819 lacks the functional heme domain of the NADH-NR polypeptide due to a point mutation or a small deletion within the coding region of the structural gene (Hasegawa et al. 1992). 	 Biochemical character,  Tolerance and resistance - Stress tolerance			GR:0060572			GO:0009703 - nitrate reductase (NADH) activity, GO:0010157 - response to chlorate	TO:0000480 - nutrient sensitivity, TO:0000502 - potassium chlorate resistance	
20858	COI		COOL-TEMPERATURE INSENSITIVE	cool-temperature insensitive		coi		This insensitivity to cool temperatures was caused by a single recessive mutation.	 Tolerance and resistance - Stress tolerance			GR:0061079			GO:0005982 - starch metabolic process, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000196 - amylose content	
20859	_	tms4(t), tms4	_	thermosensitive male sterility4(t), thermosensitive male sterility-4			9	The microsatellite RM257, located earlier on chromosome 9, was linked with the TGMS trait in SA2 at a distance of 6.2 cM. The markers RM257 and TS200 are on either side of this TGMS locus. (Reddy et al. 2000)	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061103			GO:0009266 - response to temperature stimulus	TO:0000067 - genic male sterility-thermo sensitive	
20860	STE1	ste1	_				1	one of the three major loci for low-temperature-sensitive sterility (LTSS) in the 6.1-cM interval between RZ154 and R2635 on chromosome 1.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Tolerance and resistance - Stress tolerance			GR:0061434			GO:0009409 - response to cold	TO:0000436 - spikelet sterility, TO:0000303 - cold tolerance, TO:0000180 - spikelet fertility	
20861	STE3	ste3	_				1	one of the three major loci for low-temperature-sensitive sterility (LTSS) in the 6.1-cM interval between RZ566 andRG236 of chromosome 1.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Tolerance and resistance - Stress tolerance			GR:0061436			GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000180 - spikelet fertility, TO:0000436 - spikelet sterility	
20862	STE2	ste2	_				12	one of the three major loci for low-temperature-sensitive sterility (LTSS) in the 3.4-cM interval between C732 and RG98 on chromosome 12.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Tolerance and resistance - Stress tolerance			GR:0061435			GO:0009409 - response to cold	TO:0000436 - spikelet sterility, TO:0000303 - cold tolerance, TO:0000180 - spikelet fertility	
20863	_	TGMS	_	thermosensitive genic male sterility				The TGMS trait in TS6 was controlled by single recessive gene. An RAPD marker, OPC052962, was identified to be associated with TGMS in TS6 (Latha et al. 2004).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance			GR:0061455			GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000053 - pollen sterility, TO:0000067 - genic male sterility-thermo sensitive	
20864	_		_	stem rot resistance gene			2	one of the two loci on chromosome 2 and chromosome 3 that control stem rot resistance in rice. The AFLP marker TAA/GTA167, mapped on rice chromosome 2 between the RFLP markers RZ166 and RG139, was associated with stem rot resistance.	 Tolerance and resistance - Disease resistance			GR:0061490			GO:0050832 - defense response to fungus	TO:0000323 - stem rot disease resistance	
20865	_		_	stem rot resistance gene			3	one of the two loci on chromosome 2 and chromosome 3 that control stem rot resistance in rice. Two microsatellite markers, RM232 and RM251 on chromosome 3 were associated with stem rot resistance.	 Tolerance and resistance - Disease resistance			GR:0061491			GO:0050832 - defense response to fungus	TO:0000323 - stem rot disease resistance	
20866	_	ms	_	male sterile				a single recessive gene controlling male sterility in Cypress 1819. non-PGMS sterile.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061097				TO:0000218 - pollen abortion type, TO:0000199 - genic male sterility	
20867	_	Ms	_	male sterile				a single dominant gene controlling male sterility in Kaybonnet 1789. non-PGMS sterile.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061096 				TO:0000218 - pollen abortion type, TO:0000199 - genic male sterility	
20868	_	Ms	_	male sterile				a single dominant gene controlling male sterility in Orion 1783. non-PGMS sterile.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060682 				TO:0000199 - genic male sterility, TO:0000218 - pollen abortion type	
20869	_		_	recessive lesion mimic mutant gene of M1009				Recessive gene	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0006952 - defense response	TO:0000356 - brown spot disease resistance, TO:0000074 - blast disease, TO:0000063 - mimic response, TO:0000439 - fungal disease resistance	
20870	GLUP7	Glup7	GLUTELIN PRECURSOR 7	glutelin precursor7, glutelin precursor 7, Glutelin precursor-7	GLUTELIN PRECURSOR 7				 Seed - Physiological traits - Storage substances			GR:0061452			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
20871	LMM1	Lmm1, OsACT1	LESION MIMIC 1	Lesion mimic 1, acyltransferase 1				a dominant gene.	 Biochemical character,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance			GR:0061454			GO:0050832 - defense response to fungus, GO:0052314 - phytoalexin metabolic process, GO:0006952 - defense response	TO:0002670 - momilactone A content, TO:0000074 - blast disease, TO:0000063 - mimic response	
20872	_		_	nallow and rolled leaf gene in KT95				a single recessive gene. TO:0006064: rolled leaf.	 Vegetative organ - Leaf			GR:0061439			GO:0007275 - multicellular organismal development	TO:0000492 - leaf shape, TO:0000655 - leaf development trait, TO:0000370 - leaf width	PO:0009025 - vascular leaf 
20873	_		_	a single recessive gene for chlorate resistance in M1004				NR activity in chlorate resistant mutant M1004 was almost the same as that in Norin 8. The chlorate resitance in M1004 is controlled by a different mechanism from that in M819 and M821. (Hasegawa et al. 1991)	 Tolerance and resistance - Stress tolerance						GO:0010157 - response to chlorate	TO:0000502 - potassium chlorate resistance	
20874	[CMS-MIZ4]	[cms-Miz4]*, [cms-Miz4]	CYTOPLASMIC MALE STERILITY MIZ4	'MIZ4' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage. Miz.4 is the source of male sterile cytoplasm with fertility restoring genes, as the variety Miz.4 is fertile (Pradhan and Jachuck 2000).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060168			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
20878	_	qWL6	_	a major QTL for watery lesion on chromosome 6			6	Four genes (LOC_Os06g09960, LOC_Os06g09970, LOC_Os06g10000 and  LOC_Os06g10109 =  -, Os06g0200500, Os06g0201000, Os06g0202300) in the 122-kb region of the qWL6 locus were differentially regulated between CJ06 and TN1 in response to the WBPH (whitebacked planthopper) infestation, suggesting they may be candidate resistance genes (Yang et al. 2014).	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect	TO:0000570 - watery lesion percentage, TO:0000205 - white-backed planthopper resistance	
20879	_	lf-3(t), lf-3, lf3	_	late flowering 3			7	A single recessive gene for late heading: lf-3 was mapped between the two RFLP marker C213 and RG404 on chromosome 7 (Li et al. 2001).	 Reproductive organ - Heading date						GO:0009648 - photoperiodism	TO:0000137 - days to heading	PO:0009049 - inflorescence 
20880	_	tms5	_	thermosensitive male sterility5, THERMOSENSITIVE MALE STERILITY 5				The expression of TGMS trait in UPRI 95-140TGMS was controlled by three pairs of independent recessive genes. These three tms genes were non-allelic to tms2 and tms3. The two stronger genes (tms5 and tms6) were locacted on chromosome 7 and 3 (Li and Pandey 2001). 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	GR:0061100					GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus		
20881	_	tms6	_	thermosensitive male sterility6, THERMOSENSITIVE MALE STERILITY 6				The expression of TGMS trait in UPRI 95-140TGMS was controlled by three pairs of independent recessive genes. These three tms genes were non-allelic to tms2 and tms3. The two stronger genes (tms5 and tms6) were locacted on chromosome 7 and 3 (Li and Pandey 2001). 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	GR:0060960					GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus		
20882	_	tms7	_	thermosensitive male sterility7, THERMOSENSITIVE MALE STERILITY 7				The expression of TGMS trait in UPRI 95-140TGMS was controlled by three pairs of independent recessive genes. These three tms genes were non-allelic to tms2 and tms3. The effect of tms7 was minimum (Li and Pandey 2001). 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	GR:0061101					GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development		
20883	GLH12	Glh12t, Glh12(t), Glh12	GREEN LEAFHOPPER RESISTANCE 12	Green leafhopper resistance12, Green leafhopper resistance 12, Green leafhopper resistance-12, Green leafhopper resistance-12t				the dominant gene of cultivars Hashikalmi, Ghaiya, ARC10313 and Garia.	 Tolerance and resistance - Insect resistance			GR:0060387			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
20884	GLH13	Glh13t, Glh13(t), Glh13	GREEN LEAFHOPPER RESISTANCE 13	Green leafhopper resistance13, Green leafhopper resistance 13, Green leafhopper resistance-13, Green leafhopper resistance-13t				the dominant gene of Asmaita.	 Tolerance and resistance - Insect resistance			GR:0060388			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
20885	_		_	a second gene with homology to PTOX			3	Os03g0847500 is predicted to encode a protein of only 154 amino acids and is therefore unlikely to be a functional PTOX.		Os03g0847500	LOC_Os03g63010.2, LOC_Os03g63010.1						
20886	_	AO, OsAO2, AO2	_	aldehyde oxidase, aldehyde oxidase 2			10	one of the four putative rice aldehyde oxidase (AO) proteins (Abu-Zaitoon 2014). Q7XH05. OsAO2 in Liu et al. 2019.	 Biochemical character	Os10g0138100 	LOC_Os10g04860.1				GO:0004031 - aldehyde oxidase activity, GO:0005506 - iron ion binding, GO:0005829 - cytosol, GO:0009055 - electron carrier activity, GO:0009688 - abscisic acid biosynthetic process, GO:0009851 - auxin biosynthetic process, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0050660 - FAD binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0004854 - xanthine dehydrogenase activity, GO:0009115 - xanthine catabolic process		
20887	_	AO	_	aldehyde oxidase			3	one of the four putative rice aldehyde oxidase (AO) proteins (Abu-Zaitoon 2014). LOC_Os03g57680. Q852M2.	 Biochemical character	Os03g0790700	LOC_Os03g57680.1				GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0009851 - auxin biosynthetic process, GO:0004854 - xanthine dehydrogenase activity, GO:0005506 - iron ion binding, GO:0005829 - cytosol, GO:0009055 - electron carrier activity, GO:0009115 - xanthine catabolic process, GO:0004031 - aldehyde oxidase activity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0050660 - FAD binding, GO:0009688 - abscisic acid biosynthetic process		
20888	_	AO	_	aldehyde oxidase			7	one of the four putative rice aldehyde oxidase (AO) proteins (Abu-Zaitoon 2014). LOC_Os07g18120. Q6Z351.	 Biochemical character	Os07g0281700/Os07g0281800					GO:0005829 - cytosol, GO:0004854 - xanthine dehydrogenase activity, GO:0004031 - aldehyde oxidase activity, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0005506 - iron ion binding, GO:0009115 - xanthine catabolic process, GO:0009055 - electron carrier activity, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0050660 - FAD binding, GO:0009851 - auxin biosynthetic process		
20889	_	OsNIT1, NIT1	_	nitrilase 1, NITRILASE1			2	LOC_Os02g42350.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0635000 	LOC_Os02g42330.2, LOC_Os02g42330.1				GO:0009851 - auxin biosynthetic process, GO:0006807 - nitrogen compound metabolic process, GO:0009629 - response to gravity, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	TO:0002693 - gravity response trait	
20890	_		_				11	A mutated gene in EMT1 (early-maturing TILLING 1) line. LOC_Os11g40890.			LOC_Os11g40890				GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
20891	SWEET3B	OsSWEET3b, SWEET3b	SWEET3B		SUGAR TRANSPORTER SWEET3B		1	LOC_Os01g12130. Q5NAZ9.	 Biochemical character	Os01g0220700	LOC_Os01g12130.1				GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0008643 - carbohydrate transport, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0034219 - carbohydrate transmembrane transport, GO:0051119 - sugar transmembrane transporter activity	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000249 - leaf senescence, TO:0000167 - cytokinin sensitivity	PO:0001054 - 4 leaf senescence stage 
20892	_	MtN3/saliva/SWEET gene family paralog	_				1	LOC_Os01g40960.	 Biochemical character		LOC_Os01g40960				GO:0034219 - carbohydrate transmembrane transport, GO:0010150 - leaf senescence, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0016021 - integral to membrane	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
20894	S35		F1 POLLEN STERILITY 35	Hybride male sterility 35		S35-ir, S35-as	1	F1 pollen sterility found in the japonica and indica hybrid. S35 was located between RM6324 and RM8105 on chromosome 1. S35 gene might function as a modifier of S24. S35 causes pollen sterility independently of both EFS and S24 genes, but is dependent on INK.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060833			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
20895	EFS		EPISTATIC FACTOR FOR S24			efs-j, EFS-i	2										
20896	INK		INCENTIVE FOR KILLING POLLEN			Ink-i, ink-j	5	S35 causes pollen sterility independently of both the EFS and S24, but is dependent on INK.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility								
20897	_	RBPA, RBP-A	_	RNA binding protein A			11			Os11g0637700	LOC_Os11g41890.1				GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
20898	_	RBPI, RBP-I	_	RNA binding protein I			2			Os02g0221500	LOC_Os02g12850.1				GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0030529 - ribonucleoprotein complex, GO:0019013 - viral nucleocapsid		
20899	_	RBPJ, RBP-J	_	RNA binding protein J			10			Os10g0470900	LOC_Os10g33230.1				GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
20900	_	RBPK, RBP-K	_	RNA binding protein K											GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
20901	_	RBPQ, RBP-Q	_	RNA binding protein Q											GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
20903	SUEFCD	Su-Ef-cd(t), Su-Ef-cd	_					an incompletely dominant allelic suppressor for the dominant earliness of an early maturing indica TGMS rice line 6442S-7. This incompletely dominant gene exists in the late maturing varieties, IR68, Xianguo, 9311, and BG1639.	 Reproductive organ - Heading date			GR:0060286			GO:2000028 - regulation of photoperiodism, flowering	TO:0000137 - days to heading	
20904	BB*	Bb*, B(b)	_	Beaded grain arrangement b				complementary genes. PO:0006322; third order inflorescence branch ; PO:0009049; inflorescence. 	 Reproductive organ - Inflorescence			GR:0060067			GO:0007275 - multicellular organismal development	TO:0000142 - secondary branching of inflorescence, TO:0000089 - panicle type	PO:0009049 - inflorescence , PO:0006322 - second order inflorescence branch 
20905	_	OsMSRB3, MSRB3	_	Methionine sulfoxide reductase B3			5	Q6AUK5.	 Biochemical character	Os05g0404200	LOC_Os05g33510.1				GO:0019375 - galactolipid biosynthetic process, GO:0042631 - cellular response to water deprivation, GO:0009631 - cold acclimation, GO:0016036 - cellular response to phosphate starvation, GO:0046872 - metal ion binding, GO:0070191 - methionine-R-sulfoxide reductase activity, GO:0034599 - cellular response to oxidative stress, GO:0033743 - peptide-methionine (R)-S-oxide reductase activity, GO:0005634 - nucleus, GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0030091 - protein repair		
20906	_	OsMSRB1, MSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1	_	Methionine sulfoxide reductase B1, Methionine sulfoxide reductase B1.1, peptide methionine sulfoxide reductase			6	Q0DC89. LOC_Os06g27760.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0472000 	LOC_Os06g27760.2, LOC_Os06g27760.1				GO:0033743 - peptide-methionine (R)-S-oxide reductase activity, GO:0005739 - mitochondrion, GO:0006979 - response to oxidative stress, GO:0009507 - chloroplast, GO:0009570 - chloroplast stroma, GO:0030091 - protein repair, GO:0000302 - response to reactive oxygen species, GO:0045454 - cell redox homeostasis, GO:0046872 - metal ion binding	TO:0002657 - oxidative stress	
20907	_	OsMSRA4, MSRA4, OsMSRA4.1, MSRA4.1	_	Methionine sulfoxide reductase A4, Methionine sulfoxide reductase A4.1			10	Q336R9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0563600	LOC_Os10g41400.2, LOC_Os10g41400.1				GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0030091 - protein repair, GO:0006979 - response to oxidative stress, GO:0008113 - peptide-methionine-(S)-S-oxide reductase activity	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
20908	_	OsMSRA5, MSRA5	_	Methionine sulfoxide reductase A5			6	Q5VPG8.	 Biochemical character	Os06g0138100	LOC_Os06g04650.1				GO:0008113 - peptide-methionine-(S)-S-oxide reductase activity, GO:0006979 - response to oxidative stress, GO:0030091 - protein repair		
20909	_	OsMSRA2.1, MSRA2.1	_	Methionine sulfoxide reductase A2.1			4	Q7XUP7.	 Biochemical character	Os04g0482000	LOC_Os04g40600.1				GO:0030091 - protein repair, GO:0008113 - peptide-methionine-(S)-S-oxide reductase activity, GO:0006979 - response to oxidative stress, GO:0005829 - cytosol		
20910	_	OsMSRA2.2, MSRA2.2	_	Methionine sulfoxide reductase A2.2			4	Q7XUP6.	 Biochemical character	Os04g0482100	LOC_Os04g40620.1				GO:0030091 - protein repair, GO:0006979 - response to oxidative stress, GO:0005829 - cytosol, GO:0008113 - peptide-methionine-(S)-S-oxide reductase activity		
20911	RBP-P	OsRBP-P	RNA-BINDING PROTEIN P	RNA binding protein P	RNA-BINDING PROTEIN P		1	a glutelin zipcode RNA binding protein.  a homologue of A. thaliana UBA2a and UBA2b.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Other	Os01g0265800	LOC_Os01g16090.1				GO:0048316 - seed development, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009845 - seed germination, GO:0048573 - photoperiodism, flowering, GO:0006403 - RNA localization, GO:0008380 - RNA splicing, GO:0010431 - seed maturation, GO:0016071 - mRNA metabolic process	TO:0000137 - days to heading, TO:0002653 - endosperm storage protein content, TO:0002661 - seed maturation, TO:0000346 - tiller number, TO:0000495 - chlorophyll content, TO:0002616 - flowering time, TO:0000180 - spikelet fertility, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000485 - sterility related trait	PO:0007632 - seed maturation stage 
20912	_	OsDJ-1A, DJ-1A	_	DJ-1/PfpI domain containing protein A, DJ-1 protein A			1	LOC_Os01g11860.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0217500 	LOC_Os01g11860.1				GO:0019249 - lactate biosynthetic process, GO:0005829 - cytosol, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0019172 - glyoxalase III activity, GO:0070301 - cellular response to hydrogen peroxide, GO:0046685 - response to arsenic, GO:0009409 - response to cold, GO:0003713 - transcription coactivator activity, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0002238 - response to molecule of fungal origin, GO:0051595 - response to methylglyoxal, GO:0046688 - response to copper ion	TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000080 - micronutrient sensitivity, TO:0000021 - copper sensitivity, TO:0000439 - fungal disease resistance	
20913	_	OsDJ-1B, DJ-1B	_	DJ-1/PfpI domain containing protein B, DJ-1 protein B			1	LOC_Os01g11880.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0217800 	LOC_Os01g11880.1				GO:0009408 - response to heat, GO:0070301 - cellular response to hydrogen peroxide, GO:0051595 - response to methylglyoxal, GO:0046688 - response to copper ion, GO:0046685 - response to arsenic, GO:0019249 - lactate biosynthetic process, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019172 - glyoxalase III activity, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0005829 - cytosol, GO:0003713 - transcription coactivator activity, GO:0002238 - response to molecule of fungal origin	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000021 - copper sensitivity, TO:0000080 - micronutrient sensitivity, TO:0000439 - fungal disease resistance, TO:0002657 - oxidative stress	
20914	_	OsDJ-1C, DJ-1C, OsDJ-1C.1, OsDJ-1C.2, OsDJ-1C.3	_	DJ-1/PfpI domain containing protein C, DJ-1 protein C			4	LOC_Os04g57590.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0671700 	LOC_Os04g57590.3, LOC_Os04g57590.2, LOC_Os04g57590.1				GO:0016798 - hydrolase activity, acting on glycosyl bonds, GO:0051595 - response to methylglyoxal, GO:0002238 - response to molecule of fungal origin, GO:0046688 - response to copper ion, GO:0046685 - response to arsenic, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019172 - glyoxalase III activity	TO:0000021 - copper sensitivity, TO:0000439 - fungal disease resistance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000080 - micronutrient sensitivity	
20915	_	OsDJ-1D, DJ-1D, OsDJ-1D.1, OsDJ-1D.2, OsDJ-1D.3, OsDJ-1D.4, OsDJ-1D.5	_	DJ-1/PfpI domain containing protein D, DJ-1 protein D			5	LOC_Os05g44330.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0519600 	LOC_Os05g44330.5, LOC_Os05g44330.4, LOC_Os05g44330.3, LOC_Os05g44330.2, LOC_Os05g44330.1				GO:0051595 - response to methylglyoxal, GO:0002238 - response to molecule of fungal origin, GO:0003713 - transcription coactivator activity, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009658 - chloroplast organization, GO:0016798 - hydrolase activity, acting on glycosyl bonds, GO:0019172 - glyoxalase III activity, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019249 - lactate biosynthetic process, GO:0046685 - response to arsenic, GO:0046688 - response to copper ion, GO:0070301 - cellular response to hydrogen peroxide, GO:0005829 - cytosol	TO:0000259 - heat tolerance, TO:0000080 - micronutrient sensitivity, TO:0000021 - copper sensitivity, TO:0000439 - fungal disease resistance, TO:0002657 - oxidative stress	
20916	_	OsDJ-1E, DJ-1E	_	DJ-1/PfpI domain containing protein E, DJ-1 protein E			6	LOC_Os06g34040.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0531200 	LOC_Os06g34040.1				GO:0051595 - response to methylglyoxal, GO:0002238 - response to molecule of fungal origin, GO:0003713 - transcription coactivator activity, GO:0005829 - cytosol, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009658 - chloroplast organization, GO:0019172 - glyoxalase III activity, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019249 - lactate biosynthetic process, GO:0046685 - response to arsenic, GO:0046688 - response to copper ion	TO:0000080 - micronutrient sensitivity, TO:0000021 - copper sensitivity, TO:0000439 - fungal disease resistance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	
20917	_	OsDJ-1F, DJ-1F	_	DJ-1/PfpI domain containing protein F, DJ-1 protein F			11	LOC_Os11g37920.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0591550 	LOC_Os11g37920.1				GO:0046685 - response to arsenic, GO:0046688 - response to copper ion, GO:0051595 - response to methylglyoxal, GO:0005829 - cytosol, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0019172 - glyoxalase III activity, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019249 - lactate biosynthetic process, GO:0002238 - response to molecule of fungal origin	TO:0000021 - copper sensitivity, TO:0000439 - fungal disease resistance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000080 - micronutrient sensitivity, TO:0000303 - cold tolerance	
20918	TCL1	OsTCL1	TRICHOMELESS 1	TRICHOMELESS1			1	LOC_Os01g43180. R3 MYB transcription factor. OsTCL1 inhibited trichome formation and promoted root hair formation when expressed in Arabidopsis, however, trichome and root hair formation were largely unaffected in transgenic rice plant overexpressing OsTCL1, indicating that rice may use different mechanisms to regulate trichome and root hair formation (Zheng et al. 2016).	 Other	Os01g0619100	LOC_Os01g43180.1				GO:0003677 - DNA binding		
20919	TCL2	OsTCL2	TRICHOMELESS 2	TRICHOMELESS2			1	LOC_Os01g43230. R3 MYB transcription factor.	 Other	Os01g0619900 	LOC_Os01g43230.3, LOC_Os01g43230.2, LOC_Os01g43230.1						
20920	_	OsTTG1B, TTG1B	_	TRANSPARENT TESTA GLABRA1B, TRANSPARENT TESTA GLABRA 1B			2	LOC_Os02g32430. a homologue of Arabidopsis transcription factor TTG1.		Os02g0524600 	LOC_Os02g32430.2, LOC_Os02g32430.1						
20921	_	OsGL1B, GL1B	_	GLABRA1B, GLABRA 1B			9	LOC_Os09g36370. a homologue of Arabidopsis transcription factor GL1.		Os09g0534200	LOC_Os09g36370.1				GO:0005783 - endoplasmic reticulum, GO:0006621 - protein retention in ER lumen, GO:0016021 - integral to membrane, GO:0046923 - ER retention sequence binding		
20922	HAP2K	OsHAP2K, NF-YA11, OsNF-YA11, NFYA11	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A11, NUCLEAR FACTOR-Y subunit NF-YA11, NF-YA transcription factor 11, NF-YA subunit 11, NF-YA family 11	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		2	LOC_Os02g53620.	 Other	Os02g0776400 	LOC_Os02g53620.1				GO:0003700 - transcription factor activity		
20923	HAP3L	OsHAP3L	HAP3L SUBUNIT OF CCAAT-BOX BINDING COMPLEX		HAP3L SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap3l	9	LOC_Os09g39490.	 Other	Os09g0568200 	LOC_Os09g39490.1				GO:0005634 - nucleus		
20924	HAP5H	OsHAP5H, OsNF-YC9, NF-YC9, NFYC9	HAP5H SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit C9, NUCLEAR FACTOR-Y subunit NF-YC9, NF-YC transcription factor 9, NF-YC subunit 9, NF-YC family 9	HAP5H SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap5h	1	LOC_Os01g01290.	 Other	Os01g0102400	LOC_Os01g01290.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm		PO:0009089 - endosperm 
20925	HAP5J	OsHAP5J, OsNF-YC8, NF-YC8, NFYC8	HAP5J SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit C8, NUCLEAR FACTOR-Y subunit NF-YC8, NF-YC transcription factor 8, NF-YC subunit 8, NF-YC family 8	HAP5J SUBUNIT OF CCAAT-BOX BINDING COMPLEX	osnf-yc8	1	LOC_Os01g39850.	 Other	Os01g0580400 	LOC_Os01g39850.1				GO:0005737 - cytoplasm, GO:0046982 - protein heterodimerization activity, GO:0005634 - nucleus		PO:0009089 - endosperm 
20926	HAP5K	OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12	HAP5K SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear Factor Y subunit C11, NUCLEAR FACTOR-Y subunit C12, NUCLEAR FACTOR-Y subunit NF-YC12, NF-YC transcription factor 12, NF-YC subunit 12, NF-YC family 12	HAP5K SUBUNIT OF CCAAT-BOX BINDING COMPLEX		5	LOC_Os05g23910. OsNF-YC12 in Yang et al. 2017, Li et al. 2018.	 Other	Os05g0304800 	LOC_Os05g23910.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0009089 - endosperm , PO:0005360 - aleurone layer 
20927	PGR5	OsPGR5	PROTON GRADIENT REGULATION 5		PROTON GRADIENT REGULATION 5	pgr5	8	GO:0071484: cellular response to light intensity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0566600	LOC_Os08g45190.1				GO:0010218 - response to far red light, GO:0010109 - regulation of photosynthesis, GO:0009642 - response to light intensity, GO:0009055 - electron carrier activity, GO:0009414 - response to water deprivation, GO:0009534 - chloroplast thylakoid, GO:0009637 - response to blue light, GO:0009644 - response to high light intensity, GO:0009744 - response to sucrose stimulus, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0010114 - response to red light, GO:0010117 - photoprotection, GO:0010155 - regulation of proton transport, GO:0045454 - cell redox homeostasis		
20928	_	PGRL1	_	PGR5-LIKE PHOTOSYNTHETIC PHENOTYPE 1					 Biochemical character						GO:0009773 - photosynthetic electron transport in photosystem I		
20929	CRR6	OsCRR6	CHLORORESPIRATORY REDUCTION 6		CHLORORESPIRATORY REDUCTION 6	crr6	8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0167500	LOC_Os08g07060.1				GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0016226 - iron-sulfur cluster assembly, GO:0009409 - response to cold, GO:0010109 - regulation of photosynthesis, GO:0010275 - NAD(P)H dehydrogenase complex assembly, GO:0009073 - aromatic amino acid family biosynthetic process	TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance, TO:0000543 - leaf nitrogen content	
20930	VALRS3	OsValRS3, ValRS3	VAL-TRNA SYNTHETASE 3	Val-tRNA Synthetase 3	VAL-TRNA SYNTHETASE 3		10	GO:0002161: aminoacyl-tRNA editing activity. LOC_Os10g36210.	 Biochemical character	Os10g0506200 	LOC_Os10g36210.1				GO:0006438 - valyl-tRNA aminoacylation, GO:0004832 - valine-tRNA ligase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm		PO:0009066 - anther 
20931	WP1	OsValRS2, ValRS2	WHITE PANICLE 1	Val-tRNA Synthetase 2, WHITE PANICLE1, white panicle 1	VAL-TRNA SYNTHETASE 2	wp1, wp1s, wp1w	7	LOC_Os07g06940.	 Biochemical character,  Coloration - Chlorophyll	Os07g0163500 	LOC_Os07g06940.1				GO:0009658 - chloroplast organization, GO:0006438 - valyl-tRNA aminoacylation, GO:0009507 - chloroplast, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0090069 - regulation of ribosome biogenesis, GO:0005739 - mitochondrion, GO:0010229 - inflorescence development, GO:0004832 - valine-tRNA ligase activity	TO:0000201 - panicle color, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
20932	OTS1	OsOTS1	OVERLY TOLERANT TO SALT1	Overly Tolerant to Salt 1			6	LOC_Os06g29310. the closest homolog of AtOTS1. SUMO protease protein. GO:2000280: regulation of root development.	 Biochemical character,  Vegetative organ - Root,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os06g0487900 	LOC_Os06g29310.2, LOC_Os06g29310.1				GO:0005634 - nucleus, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0004175 - endopeptidase activity, GO:0048364 - root development, GO:0016929 - SUMO-specific protease activity, GO:0016926 - protein desumoylation, GO:0016049 - cell growth, GO:0010030 - positive regulation of seed germination, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress	TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance, TO:0000430 - germination rate, TO:0000656 - root development trait, TO:0000259 - heat tolerance, TO:0000227 - root length, TO:0002686 - cell growth and development trait, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000495 - chlorophyll content, TO:0006001 - salt tolerance	PO:0006057 - cotyledon abaxial epidermis , PO:0007520 - root development stage 
20933	OTS2	OsOTS2	OVERLY TOLERANT TO SALT2				12	LOC_Os12g41380. the closest homolog of AtOTS2. a SUMO protease protein.		Os12g0606900	LOC_Os12g41380.1						
20934	_	SOD, OsSOD-Cu/Zn, SOD-Cu/Zn	_	superoxide dismutase			4	LOC_Os04g48410. Q7XTY9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0573200 	LOC_Os04g48410.2, LOC_Os04g48410.1				GO:0009409 - response to cold, GO:0008270 - zinc ion binding, GO:0006878 - cellular copper ion homeostasis, GO:0030001 - metal ion transport, GO:0016532 - superoxide dismutase copper chaperone activity, GO:0006801 - superoxide metabolic process, GO:0009570 - chloroplast stroma, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0055114 - oxidation reduction, GO:0043085 - positive regulation of catalytic activity	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
20935	_		_	SUMO protease protein			1	LOC_Os01g63040.	 Biochemical character	Os01g0849900 	LOC_Os01g63040.1				GO:0008234 - cysteine-type peptidase activity		
20936	_		_	SUMO protease protein			11	LOC_Os11g01180.	 Biochemical character	Os11g0102700 	LOC_Os11g01180.1				GO:0004175 - endopeptidase activity, GO:0016929 - SUMO-specific protease activity, GO:0016926 - protein desumoylation, GO:0005634 - nucleus		
20937	_		_	SUMO protease protein			12	LOC_Os12g01290.	 Biochemical character	Os12g0103450 	LOC_Os12g01290.1				GO:0006952 - defense response, GO:0017148 - negative regulation of translation, GO:0008234 - cysteine-type peptidase activity, GO:0030598 - rRNA N-glycosylase activity		
20938	_		_	SUMO protease protein			9	LOC_Os09g11850. The ULP1 from S. cerevisiae has strongest homology to Os09g11850, which could imply that this protein may be one of the ancestral forms of SUMO protease (Srivastava et al. 2016).		Os09g0290500 	LOC_Os09g11850.1						
20939	SPF1	OsSPF1, OsSPF1.1, OsSPF1.2	SUMO PROTEASE RELATED TO FERTILITY 1	SUMO protease protein, SUMO PROTEASE RELATED TO FERTILITY1	SUMO PROTEASE RELATED TO FERTILITY 1		5		 Biochemical character	Os05g0207900	LOC_Os05g11770.1				GO:0008234 - cysteine-type peptidase activity		
20940	_		_	SUMO protease protein			11	LOC_Os11g10780.	 Biochemical character	Os11g0213900/Os11g0214001 					GO:0008234 - cysteine-type peptidase activity		
20941	ELS1	OsELS1	ESD4-LIKE SUMO PROTEASE 1	SUMO protease protein	ESD4-LIKE SUMO PROTEASE 1	els1	1	an ortholog of AtEsd4.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date	Os01g0355900	LOC_Os01g25370.3, LOC_Os01g25370.2, LOC_Os01g25370.1				GO:0048573 - photoperiodism, flowering, GO:0009739 - response to gibberellin stimulus, GO:0004175 - endopeptidase activity, GO:0016929 - SUMO-specific protease activity, GO:0016926 - protein desumoylation, GO:0005634 - nucleus	TO:0000166 - gibberellic acid sensitivity, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000207 - plant height	
20942	FUG1	OsFUG1	_	SUMO protease protein		fug1	3	TO:0000847: panicle inflorescence morphology trait.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits	Os03g0344300 	LOC_Os03g22400.1, LOC_Os03g22400.2, LOC_Os03g22400.3				GO:0009739 - response to gibberellin stimulus, GO:0004175 - endopeptidase activity, GO:0005634 - nucleus, GO:0016926 - protein desumoylation, GO:0016929 - SUMO-specific protease activity	TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000420 - fertility related trait, TO:0000181 - seed weight	
20943	ELS2	OsELS2	ESD4-LIKE SUMO PROTEASE 2	SUMO protease protein	ESD4-LIKE SUMO PROTEASE 2		3		 Biochemical character	Os03g0410100 	LOC_Os03g29630.1				GO:0008234 - cysteine-type peptidase activity		
20944	OTS3	OsOTS3	OVERLY TOLERANT TO SALT 3	SUMO protease protein, Overly Tolerant to Salt3			1		 Biochemical character	Os01g0738100	LOC_Os01g53630.1				GO:0008234 - cysteine-type peptidase activity, GO:0016021 - integral to membrane		
20945	_	OsRBD1, RBD1	_	RNA Binding Domain-Containing Protein 1, RNA binding domain 1-containing protein			12	LOC_Os12g01010.	 Tolerance and resistance - Stress tolerance	Os12g0100100	LOC_Os12g01010.1				GO:0009409 - response to cold, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0006979 - response to oxidative stress, GO:0009269 - response to desiccation, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0051595 - response to methylglyoxal	TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
20946	SRL2	NRL2, OsSRL2, OsNRL2	SEMI-ROLLED LEAF 2	semi-rolled leaf2, semi-rolled leaf 2, narrow and rolled leaf 2		srl2, nrl2-1, nrl2- 2	3	LOC_Os03g19520. GO:2000024: regulation of leaf development. GO:2000652: regulation of secondary cell wall biogenesis. TO:0000820: leaf vein anatomy and morphology trait.	 Vegetative organ - Leaf,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Morphological traits - Grain shape	Os03g0308200	LOC_Os03g19520.3, LOC_Os03g19520.2, LOC_Os03g19520.1				GO:0009555 - pollen development, GO:0009556 - microsporogenesis, GO:0006558 - L-phenylalanine metabolic process, GO:0009834 - secondary cell wall biogenesis, GO:0048366 - leaf development	TO:0000655 - leaf development trait, TO:0000391 - seed size, TO:0000207 - plant height, TO:0000370 - leaf width, TO:0002641 - acid detergent fiber, TO:0000455 - seed set percent, TO:0000430 - germination rate, TO:0000492 - leaf shape, TO:0000085 - leaf rolling, TO:0000149 - seed width	PO:0001007 - pollen development stage , PO:0020104 - leaf sheath , PO:0005020 - vascular bundle , PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0025034 - leaf , PO:0001050 - leaf development stage , PO:0006019 - leaf abaxial epidermis , PO:0009066 - anther , PO:0009071 - anther wall tapetum , PO:0009005 - root 
20947	_		_	SRL2-like gene, semi-rolled leaf 2-like gene			2	LOC_Os02g05040.		Os02g0143200 	LOC_Os02g05040.1						
20948	_		_	SRL2-like gene, semi-rolled leaf 2-like gene			1	LOC_Os01g67290.		Os01g0898300 	LOC_Os01g67290.2, LOC_Os01g67290.1						
20949	_		_	SRL2-like gene, semi-rolled leaf 2-like gene			7	LOC_Os07g10550.		Os07g0205900	LOC_Os07g10550.1						
20950	_	RHS10	_	rice RHS10 ortholog			3	LOC_Os03g37120. a rice ortholog of Arabidopsis RHS10 (ROOT HAIR SPECIFIC 10) . Extensin family protein.	 Vegetative organ - Root	Os03g0568800 	LOC_Os03g37120.1				GO:0048767 - root hair elongation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
20952	HDR1		HEADING DATE REPRESSOR 1	Heading Date Repressor1, Heading Date Repressor 1	HEADING DATE REPRESSOR 1	hdr1	2	LOC_Os02g55080.	 Reproductive organ - Heading date	Os02g0793900	LOC_Os02g55080.1				GO:0007623 - circadian rhythm, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus		PO:0025395 - floral organ , PO:0025034 - leaf 
20954	_	PH12, PH-12, phasiPH12-1	_	PH12 precursor, PH12 precursor lncRNA, PH12 lncRNA, PH12 long non-coding RNA, phasiPH12-1 phasiRNA, phasiPH12-1 phased small interfering RNA					 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0009908 - flower development, GO:0010229 - inflorescence development	TO:0000622 - flower development trait, TO:0000621 - inflorescence development trait	PO:0000230 - inflorescence meristem , PO:0006327 - spikelet meristem , PO:0007615 - flower development stage , PO:0009029 - stamen , PO:0025277 - pollen sac , PO:0001083 - inflorescence development stage 
20955	_	OsCEP6, CEP6	_	C-TERMINALLY ENCODED PEPTIDE 6			1	LOC_Os01g53010.		Os01g0730400	LOC_Os01g53010.1						
20956	_	OsCEP7, CEP7, OsCEP8, CEP8	_	C-TERMINALLY ENCODED PEPTIDE 7			1	LOC_Os01g10640. OsCEP7 and OsCEP8 in Sui et al. 2016. OsCEP7 (Os01g0203400.1) identified from Nipponbare was assumed to be OsCEP8 (EAY72936.1) from 93 to 11 based on sequence similarity and consistent mapping position (Sui et al. 2016).		Os01g0203400	LOC_Os01g10640.1				GO:0016021 - integral to membrane		
20957	_	OsCEP9, CEP9	_	C-TERMINALLY ENCODED PEPTIDE 9			5	LOC_Os05g45380.		Os05g0530033	LOC_Os05g45380.1						
20958	_	OsCEP10, CEP10	_	C-TERMINALLY ENCODED PEPTIDE 10			6	LOC_Os06g05960.		Os06g0153000 	LOC_Os06g05960.1						
20959	_	OsCEP11, CEP11	_	C-TERMINALLY ENCODED PEPTIDE 11			5	LOC_Os05g11620.		Os05g0206100 	LOC_Os05g11620.1						
20960	_	OsCEP12, CEP12	_	C-TERMINALLY ENCODED PEPTIDE 12			5	LOC_Os05g11580.		Os05g0205400  	LOC_Os05g11580.1						PO:0009005 - root 
20961	_	OsCEP13, CEP13	_	C-TERMINALLY ENCODED PEPTIDE 13			5	LOC_Os05g11600.		Os05g0205800	LOC_Os05g11600.1						PO:0009005 - root 
20962	_	OsCEP14, CEP14	_	C-TERMINALLY ENCODED PEPTIDE 14			5	LOC_Os05g11610.		Os05g0206000	LOC_Os05g11610.1						
20963	_	OsCEP15, CEP15	_	C-TERMINALLY ENCODED PEPTIDE 15			6	LOC_Os06g43080.		Os06g0637400	LOC_Os06g43080.1						
20964	_	OsSRK, SRK	_	stress-responsive leucine-rich repeat receptor-like kinase, stress-responsive LRR-like kinase			2	LOC_Os02g10100. Q7F8Q9.	 Tolerance and resistance - Stress tolerance	Os02g0194400	LOC_Os02g10100.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane		
20965	_	OsDeg-like 5	_	Deg protease-like 5			3	LOC_Os03g41170.	 Biochemical character	Os03g0608600	LOC_Os03g41170.1				GO:0008233 - peptidase activity		
20966	_	OsMED11_1, MED11_1	_	Mediator 11_1			2	LOC_Os02g09600. GO:0001104: RNA polymerase II transcription cofactor activity.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os02g0189100 	LOC_Os02g09600.3, LOC_Os02g09600.2, LOC_Os02g09600.1				GO:0016592 - mediator complex	TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000734 - grain length	
20967	_	OsMED5_3, MED5_3	_	Mediator 5_3			7	LOC_Os07g48350.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0681500	LOC_Os07g48350.1					TO:0000382 - 1000-seed weight, TO:0000402 - grain width, TO:0000396 - grain yield	
20968	_	OsMED14_1, MED14_1	_	Mediator 14_1			8	LOC_Os08g24400. GO:0001104: RNA polymerase II transcription cofactor activity.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os08g0332800 	LOC_Os08g24400.1				GO:0070847 - core mediator complex, GO:0016592 - mediator complex	TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000396 - grain yield	
20969	_	OsMED20_1, MED20_1	_	Mediator 20_1			9	LOC_Os09g27140. GO:0001104: RNA polymerase II transcription cofactor activity.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os09g0443500 	LOC_Os09g27140.2, LOC_Os09g27140.1				GO:0003713 - transcription coactivator activity, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0016592 - mediator complex	TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000402 - grain width	
20970	_	OsMED12_2, MED12_2	_	Mediator 12_2			9	LOC_Os10g40260. GO:0001104: RNA polymerase II transcription cofactor activity.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os10g0550100/Os10g0550066					GO:0003713 - transcription coactivator activity, GO:0048316 - seed development, GO:0016592 - mediator complex	TO:0000734 - grain length, TO:0000653 - seed development trait, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield	PO:0001170 - seed development stage 
20971	_	OsMED4_2, MED4_2	_	Mediator 4_2			11	LOC_Os11g05150.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity		LOC_Os11g05150				GO:0048316 - seed development	TO:0000402 - grain width, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
20972	_	OsMed11_2, Med11_2	_	Mediator 11_2			2	LOC_Os02g49640. 			LOC_Os02g49640						
20973	_	OsMed12_1, Med12_1	_	Mediator 12_1			7	LOC_Os07g45400. GO:0001104: RNA polymerase II transcription cofactor activity.		Os07g0648266/Os07g0648300					GO:0016592 - mediator complex		
20974	_	OsMed13_1, Med13_1	_	Mediator 13_1			5	LOC_Os05g37500. GO:0001104: RNA polymerase II transcription cofactor activity.		Os05g0447500/Os05g0447580/Os05g0447620 					GO:0016592 - mediator complex		
20975	_	OsMed14_2, Med14_2	_	Mediator 14_2			9	LOC_Os09g10960. GO:0001104: RNA polymerase II transcription cofactor activity.		Os09g0281900 	LOC_Os09g10960.1				GO:0070847 - core mediator complex, GO:0016592 - mediator complex		
20976	_	OsMed16_1, Med16_1, OsSFR6, SFR6	_	Mediator 16_1, SENSITIVE TO FREEZING-6			10	a functional rice orthologue of SENSITIVE TO FREEZING-6.	 Tolerance and resistance - Stress tolerance	Os10g0498700	LOC_Os10g35560.2, LOC_Os10g35560.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20977	_	OsMed17_1, Med17_1	_	Mediator 17_1			12	LOC_Os12g44140. GO:0001104: RNA polymerase II transcription cofactor activity		Os12g0638600 	LOC_Os12g44140.1				GO:0016592 - mediator complex		
20978	_	OsMed18_1, Med18_1	_	Mediator 18_1			2	LOC_Os02g57590. 		Os02g0821800 	LOC_Os02g57590.2, LOC_Os02g57590.1				GO:0008168 - methyltransferase activity, GO:0003723 - RNA binding, GO:0006364 - rRNA processing, GO:0008033 - tRNA processing		
20979	_	OsMed22_1, Med22_1	_	Mediator 22_1			1	LOC_Os01g04110. GO:0001104: RNA polymerase II transcription cofactor activity. unnamed protein product in Jang et al. 2018.	 Tolerance and resistance - Stress tolerance	Os01g0132700 	LOC_Os01g04110.1				GO:0016592 - mediator complex	TO:0000031 - silicon sensitivity	
20980	_	OsMed22_2, Med22_2	_	Mediator 22_2			8	LOC_Os08g37480. GO:0001104: RNA polymerase II transcription cofactor activity.		Os08g0480500  	LOC_Os08g37480.2, LOC_Os08g37480.1				GO:0016592 - mediator complex		
20981	_	OsMed23_1, Med23_1	_	Mediator 23_1			2	LOC_Os02g49992.		Os02g0732700 	LOC_Os02g49992.3, LOC_Os02g49992.2, LOC_Os02g49992.1						
20982	_	OsMed26_1, Med26_1	_	Mediator 26_1			10	LOC_Os10g10270.		Os10g0182200 	LOC_Os10g10270.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
20983	_	OsMed26_2, Med26_2	_	Mediator 26_2			11	LOC_Os11g06650.	 Other	Os11g0166800 	LOC_Os11g06650.1				GO:0006368 - RNA elongation from RNA polymerase II promoter, GO:0003677 - DNA binding, GO:0070449 - elongin complex		
20984	_	OsMed26_4, Med26_4	_	Mediator 26_4			10	LOC_Os10g10260.	 Other	Os10g0182100	LOC_Os10g10260.1				GO:0003746 - translation elongation factor activity, GO:0003677 - DNA binding, GO:0006368 - RNA elongation from RNA polymerase II promoter, GO:0070449 - elongin complex		
20985	_	OsMed28_1, Med28_1	_	Mediator 28_1			5	LOC_Os05g06290.		Os05g0154900 	LOC_Os05g06290.1				GO:0016592 - mediator complex		
20986	_	OsMed3_1, Med3_1	_	Mediator 3_1			1	LOC_Os01g15850.		Os01g0263500 	LOC_Os01g15850.1						
20987	_	OsMed30_1, Med30_1	_	Mediator 30_1			4	LOC_Os04g31910.		Os04g0388601	LOC_Os04g31910.1						
20988	_	OsMed34_2, Med34_2	_	Mediator 34_2			11	LOC_Os11g48090. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os11g0708600 	LOC_Os11g48090.5, LOC_Os11g48090.4, LOC_Os11g48090.3, LOC_Os11g48090.2				GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0032508 - DNA duplex unwinding, GO:0043140 - ATP-dependent 3'-5' DNA helicase activity, GO:0009378 - four-way junction helicase activity, GO:0016021 - integral to membrane, GO:0006310 - DNA recombination, GO:0005737 - cytoplasm, GO:0005694 - chromosome, GO:0005634 - nucleus		
20989	_	OsMed35_1, Med35_1	_	Mediator 35_1			10	LOC_Os10g34380.		Os10g0485000 	LOC_Os10g34380.1						
20990	_	OsMed36_1, Med36_1	_	Mediator 36_1			2	LOC_Os02g57590.		Os02g0821800	LOC_Os02g57590.2, LOC_Os02g57590.1				GO:0008033 - tRNA processing, GO:0008168 - methyltransferase activity, GO:0003723 - RNA binding, GO:0006364 - rRNA processing		
20992	_	OsMed5_1, Med5_1	_	Mediator 5_1			5	LOC_Os05g24684.		Os05g0312000	LOC_Os05g24684.1						
20993	_	OsMed5_2, Med5_2	_	Mediator 5_2			7	LOC_Os07g11000.		Os07g0211101/Os07g0211200 							
20994	_	OsMed8_1, Med8_1	_	Mediator 8_1			3	LOC_Os03g31010.		Os03g0423800	LOC_Os03g31010.1						
20995	_	OsMed9_2, Med9_2	_	Mediator 9_2			3	LOC_Os03g15560.		Os03g0262100 	LOC_Os03g15560.1						
20996	APIP10	OsAPIP10	AVRPIZ-T INTERACTING PROTEIN 10	AvrPiz-t Interacting Protein 10	AVRPIZ-T INTERACTING PROTEIN 10		2	E3 Ligase. a positive regulator of PAMP-triggered immunity (PTI). RING Finger Protein (OsRFP).	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0182900 	LOC_Os02g09060.2, LOC_Os02g09060.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0008270 - zinc ion binding, GO:0016567 - protein ubiquitination, GO:0043130 - ubiquitin binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
20997	_	OsLSR, LSR	_	Low seed setting related			10	NB-LRR-like gene. 	 Tolerance and resistance - Disease resistance	Os10g0183000	LOC_Os10g10360.4, LOC_Os10g10360.3, LOC_Os10g10360.2, LOC_Os10g10360.1				GO:0070623 - regulation of thiamin biosynthetic process, GO:0009507 - chloroplast, GO:0050776 - regulation of immune response, GO:0009626 - plant-type hypersensitive response, GO:0043531 - ADP binding, GO:0008219 - cell death	TO:0000112 - disease resistance	
20998	_	OsTHIC, THIC	_	HMP-P synthase			3	homologous to the Arabidopsis AtTHIC.	 Biochemical character	Os03g0679700	LOC_Os03g47610.8, LOC_Os03g47610.6, LOC_Os03g47610.5, LOC_Os03g47610.4, LOC_Os03g47610.3, LOC_Os03g47610.2, LOC_Os03g47610.1				GO:0009228 - thiamin biosynthetic process, GO:0051536 - iron-sulfur cluster binding		
20999	_		CUPINCIN	Cupincin			6	LOC_Os06g43830. B8AL97. cupin domain containing protease.			LOC_Os06g43830				GO:0045735 - nutrient reservoir activity		
21000	_		_	Rice binding protein, C-terminal binding protein			3	Rice binding protein with 2-Hacid_dh_C conservative domain structure. a transcriptional repressor.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0126000	LOC_Os03g03450.2, LOC_Os03g03450.1				GO:0003824 - catalytic activity, GO:0005829 - cytosol, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0006952 - defense response, GO:0000162 - tryptophan biosynthetic process, GO:0004048 - anthranilate phosphoribosyltransferase activity	TO:0000031 - silicon sensitivity, TO:0000112 - disease resistance	
21001	CYP704A3	OsCYP704A3	P-450 704A3	Cytochrome P450 704A3	CYTOCHROME P450 51H2		4	LOC_Os04g48460.	 Biochemical character,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape	Os04g0573900	LOC_Os04g48460.2, LOC_Os04g48460.1				GO:0010229 - inflorescence development, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding	TO:0000621 - inflorescence development trait, TO:0000734 - grain length, TO:0000146 - seed length, TO:0000391 - seed size	PO:0001083 - inflorescence development stage 
21002	MIRF10422-AKR	osa-miRf10422-akr, miRf10422-akr	MICRORNA F10422-AKR	MICRORNA f10422-akr	_		3	target gene: CYP704A3 (Os04g0573900). miRBASE accession: -.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
21003	MIR2923A	osa-MIR2923a, MIR2923a	MICRORNA 2923A	MICRORNA 2923a	_		4	miRBase ID: -. Target genes: carbonic anhydrase (Os11g0153200), transposon Rim2 M53 (BK000333), Polyphenol oxidase (Os04g0624500).	 Seed - Morphological traits - Grain shape,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0002731 - grain length to width ratio, TO:0000734 - grain length	
21004	ALPHACA10	OsalphaCA10, alphaCA10	ALPHA-CARBONIC ANHYDRASE 10	carbonic anhydrase, alpha-carbonic anhydrase 10	ALPHA-CARBONIC ANHYDRASE 10		11	LOC_Os11g05520.	 Biochemical character	Os11g0153200	LOC_Os11g05520.1, LOC_Os11g05510.1						
21005	ARFA1C	OsARFA1c, ARFA1c	ADP-RIBOSYLATION FACTOR A1C	ADP-ribosylation factor A1c	ADP-RIBOSYLATION FACTOR A1C		7	LOC_Os07g12170.	 Tolerance and resistance - Stress tolerance	Os07g0223100 	LOC_Os07g12170.1				GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0005525 - GTP binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
21006	ARFA1E	OsARFA1e, ARFA1e	ADP-RIBOSYLATION FACTOR A1E	ADP-ribosylation factor A1e	ADP-RIBOSYLATION FACTOR A1E		1	LOC_Os01g16030.		Os01g0265100	LOC_Os01g16030.4, LOC_Os01g16030.3, LOC_Os01g16030.2, LOC_Os01g16030.1				GO:0015031 - protein transport, GO:0005622 - intracellular, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction		
21007	ARFB1A	OsARFB1a, ARFB1a	ADP-RIBOSYLATION FACTOR B1A	ADP-ribosylation factor B1a	ADP-RIBOSYLATION FACTOR B1A		6	LOC_Os06g02390.	 Tolerance and resistance - Stress tolerance	Os06g0114200	LOC_Os06g02390.1				GO:0015031 - protein transport, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21008	ARFB1B	OsARFB1b, ARFB1b	ADP-RIBOSYLATION FACTOR B1B	ADP-ribosylation factor B1b	ADP-RIBOSYLATION FACTOR B1B		2	LOC_Os02g03610.	 Tolerance and resistance - Stress tolerance	Os02g0128600 	LOC_Os02g03610.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21009	ARFB1C	OsARFB1c, ARFB1c	ADP-RIBOSYLATION FACTOR B1C	ADP-ribosylation factor B1c	ADP-RIBOSYLATION FACTOR B1C		10	LOC_Os10g42940.		Os10g0580200	LOC_Os10g42940.4, LOC_Os10g42940.3, LOC_Os10g42940.1				GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction		
21010	ARFB1D	OsARFB1d, ARFB1d	ADP-RIBOSYLATION FACTOR B1D	ADP-ribosylation factor B1d	ADP-RIBOSYLATION FACTOR B1D		2	LOC_Os02g47110.2		Os02g0699300	LOC_Os02g47110.3, LOC_Os02g47110.2, LOC_Os02g47110.1				GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction		
21011	ARF3	OsARF3, ARF3	ADP-RIBOSYLATION FACTOR 3	ADP-ribosylation factor 3	ADP-RIBOSYLATION FACTOR 3		8	LOC_Os08g15040.		Os08g0248900	LOC_Os08g15040.2, LOC_Os08g15040.1				GO:0005622 - intracellular, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction		
21012	ARFC1	OsARFC1, ARFC1	ADP-RIBOSYLATION FACTOR C1	ADP-ribosylation factor C1	ADP-RIBOSYLATION FACTOR C1		11	LOC_Os11g37640.		Os11g0586900 	LOC_Os11g37640.1				GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction		PO:0009066 - anther 
21013	GB1A	OsGB1a, GB1a	GTP-BINDING PROTEIN 1A	GTP-binding protein 1a	GTP-BINDING PROTEIN 1A		3	LOC_Os03g27450.		Os03g0392300	LOC_Os03g27450.2, LOC_Os03g27450.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005622 - intracellular, GO:0005525 - GTP binding, GO:0015031 - protein transport		PO:0009006 - shoot system 
21014	GB1B	OsGB1b, GB1b	GTP-BINDING PROTEIN 1B	GTP-binding protein 1b	GTP-BINDING PROTEIN 1B		7	LOC_Os07g42820.	 Tolerance and resistance - Stress tolerance	Os07g0620400 	LOC_Os07g42820.1				GO:0009737 - response to abscisic acid stimulus, GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0015031 - protein transport	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21015	TTN5	OsTTN5, TTN5	TITIN 5	Titin 5	TITIN 5		2	LOC_Os02g22140.		Os02g0327100 	LOC_Os02g22140.1				GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding		
21016	_	OsARL1a, ARL1a	_	ARF-like protein 1a	_		3	LOC_Os03g10370.	 Tolerance and resistance - Stress tolerance	Os03g0200800 	LOC_Os03g10370.1				GO:0009737 - response to abscisic acid stimulus, GO:0016020 - membrane, GO:0009269 - response to desiccation, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009066 - anther 
21017	_	OsARL1b, ARL1b	_	ARF-like protein 1b	_		2	LOC_Os02g49980.		Os02g0732500 	LOC_Os02g49980.2, LOC_Os02g49980.1				GO:0005525 - GTP binding, GO:0016020 - membrane, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005622 - intracellular		
21018	SAR1C	OsARL1d, ARL1d, OsSar1c, Sar1c	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1C	"ARF-like protein 1d, \"secretion-associated, Ras-related protein1c\""	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1C		1	LOC_Os01g15010.	 Seed - Morphological traits,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances	Os01g0254000	LOC_Os01g15010.1				GO:0006886 - intracellular protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0048623 - seed germination on parent plant, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0016192 - vesicle-mediated transport, GO:0005525 - GTP binding	TO:0000202 - germination ratio, TO:0000390 - grain core percent white, TO:0000100 - shrunken endosperm, TO:0000104 - floury endosperm, TO:0000490 - protein composition related trait, TO:0002653 - endosperm storage protein content	
21019	SAR1A	OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1A	"ARF-like protein 1e, \"secretion-associated, Ras-related protein1a\""	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1A		1	LOC_Os01g23620. a basic COPII coat machinery component.	 Seed - Morphological traits,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances	Os01g0338000 	LOC_Os01g23620.1				GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0005525 - GTP binding, GO:0048623 - seed germination on parent plant, GO:0016192 - vesicle-mediated transport, GO:0007264 - small GTPase mediated signal transduction, GO:0006886 - intracellular protein transport	TO:0000202 - germination ratio, TO:0000490 - protein composition related trait, TO:0002653 - endosperm storage protein content, TO:0000104 - floury endosperm, TO:0000100 - shrunken endosperm, TO:0000390 - grain core percent white	
21020	SAR1B	OsARL1f, ARL1f, OsSar1b, Sar1b	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1B	"ARF-like protein 1f, \"secretion-associated, Ras-related protein1b\""	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1B		12	LOC_Os12g37360.	 Seed - Morphological traits,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os12g0560300 	LOC_Os12g37360.1				GO:0009414 - response to water deprivation, GO:0005525 - GTP binding, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0006886 - intracellular protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0009651 - response to salt stress, GO:0016192 - vesicle-mediated transport, GO:0009269 - response to desiccation, GO:0009737 - response to abscisic acid stimulus, GO:0048623 - seed germination on parent plant	TO:0006001 - salt tolerance, TO:0000202 - germination ratio, TO:0000276 - drought tolerance, TO:0000390 - grain core percent white, TO:0000100 - shrunken endosperm, TO:0000104 - floury endosperm, TO:0002653 - endosperm storage protein content, TO:0000490 - protein composition related trait, TO:0000615 - abscisic acid sensitivity	
21021	EIF3F	eIF-3f, OseIF3f	EUKARYOTIC INITIATION FACTOR 3F	"\"eukaryotic translation initiation factor 3, subunit f\", Eukaryotic translation initiation factor 3 subunit f"	EUKARYOTIC INITIATION FACTOR 3F		5	LOC_Os05g01450. GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0104800 	LOC_Os05g01450.2, LOC_Os05g01450.1				GO:0001731 - formation of translation preinitiation complex, GO:0031369 - translation initiation factor binding, GO:0055046 - microgametogenesis, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0009555 - pollen development, GO:0000502 - proteasome complex, GO:0003743 - translation initiation factor activity, GO:0005783 - endoplasmic reticulum, GO:0005829 - cytosol, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006413 - translational initiation, GO:0006446 - regulation of translational initiation	TO:0000218 - pollen abortion type, TO:0000180 - spikelet fertility, TO:0000421 - pollen fertility, TO:0000396 - grain yield	PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0009049 - inflorescence 
21022	EIF3A	eIF-3a, OseIF3a	EUKARYOTIC INITIATION FACTOR 3A	"\"eukaryotic translation initiation factor 3, subunit a\""	EUKARYOTIC INITIATION FACTOR 3A		1	LOC_Os01g03070.	 Other	Os01g0120800 	LOC_Os01g03070.2, LOC_Os01g03070.1				GO:0016021 - integral to membrane, GO:0003743 - translation initiation factor activity		
21023	EIF3B	eIF-3b, OseIF3b	EUKARYOTIC INITIATION FACTOR 3B	"\"eukaryotic translation initiation factor 3, subunit b\", Eukaryotic translation initiation factor 3 subunit b"	EUKARYOTIC INITIATION FACTOR 3B		10	LOC_Os10g41960.	 Other	Os10g0569200	LOC_Os10g41960.1				GO:0000166 - nucleotide binding, GO:0016021 - integral to membrane, GO:0006446 - regulation of translational initiation, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0003743 - translation initiation factor activity, GO:0001731 - formation of translation preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex		
21024	_	eIF-3c, OseIF3c, EIF3C	_	"\"eukaryotic translation initiation factor 3, subunit c\", EUKARYOTIC INITIATION FACTOR 3C"			7	LOC_Os07g03230.	 Other	Os07g0124500 	LOC_Os07g03230.2, LOC_Os07g03230.1				GO:0003743 - translation initiation factor activity, GO:0006413 - translational initiation, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0031369 - translation initiation factor binding, GO:0006446 - regulation of translational initiation, GO:0016021 - integral to membrane, GO:0001731 - formation of translation preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex		
21025	_	eIF-3c, OseIF3c, EIF3C	_	"\"eukaryotic translation initiation factor 3, subunit c\", EUKARYOTIC INITIATION FACTOR 3C"			2	LOC_Os02g03080 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Other						GO:0016282 - eukaryotic 43S preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0003743 - translation initiation factor activity, GO:0006446 - regulation of translational initiation, GO:0001731 - formation of translation preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex		
21026	EIF3D	eIF-3d, OseIF3d	EUKARYOTIC INITIATION FACTOR 3D	"\"eukaryotic translation initiation factor 3, subunit d\", Eukaryotic translation initiation factor 3 subunit d"	EUKARYOTIC INITIATION FACTOR 3D		5	LOC_Os05g49150.	 Other	Os05g0566500	LOC_Os05g49150.1				GO:0003743 - translation initiation factor activity, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0006446 - regulation of translational initiation, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0001731 - formation of translation preinitiation complex		
21027	EIF3E	eIF-3e, OseIF3e	EUKARYOTIC INITIATION FACTOR 3E	"\"eukaryotic translation initiation factor 3, subunit e\""	EUKARYOTIC INITIATION FACTOR 3E		7	LOC_Os07g07250.	 Other	Os07g0167000 	LOC_Os07g07250.1				GO:0016282 - eukaryotic 43S preinitiation complex, GO:0005634 - nucleus, GO:0001731 - formation of translation preinitiation complex, GO:0003743 - translation initiation factor activity, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0033290 - eukaryotic 48S preinitiation complex		
21028	EIF3G	eIF-3g, OseIF3g, RBP-43	EUKARYOTIC INITIATION FACTOR 3G	"\"eukaryotic translation initiation factor 3, subunit g\", RNA-binding RBP-43"	EUKARYOTIC INITIATION FACTOR 3G		2	LOC_Os02g54700.	 Other	Os02g0788400 	LOC_Os02g54700.2				GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0001731 - formation of translation preinitiation complex, GO:0000166 - nucleotide binding, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0003743 - translation initiation factor activity		
21029	EIF3K	eIF-3k, OseIF3k	EUKARYOTIC INITIATION FACTOR 3K	"\"eukaryotic translation initiation factor 3, subunit k\", Eukaryotic translation initiation factor 3 subunit k"	EUKARYOTIC INITIATION FACTOR 3K		3	LOC_Os03g08450. Q94HF1	 Other	Os03g0182700	LOC_Os03g08450.1				GO:0003743 - translation initiation factor activity, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0043022 - ribosome binding, GO:0001731 - formation of translation preinitiation complex		
21030	EIF3L	eIF-3l, OseIF3l	EUKARYOTIC INITIATION FACTOR 3L	"\"eukaryotic translation initiation factor 3, subunit l\""	EUKARYOTIC INITIATION FACTOR 3L		5	LOC_Os05g13950.	 Other	Os05g0227700 	LOC_Os05g13950.2, LOC_Os05g13950.1				GO:0006446 - regulation of translational initiation, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0003743 - translation initiation factor activity, GO:0001731 - formation of translation preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex		
21031	EIF3M	eIF-3m, OseIF3m	EUKARYOTIC INITIATION FACTOR 3M	"\"eukaryotic translation initiation factor 3, subunit m\""	EUKARYOTIC INITIATION FACTOR 3M		4	LOC_Os04g01290. GO:0002183: cytoplasmic translational initiation.	 Other	Os04g0103200 	LOC_Os04g01290.3, LOC_Os04g01290.2, LOC_Os04g01290.1				GO:0001731 - formation of translation preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0006446 - regulation of translational initiation, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0003743 - translation initiation factor activity		
21032	GATB	OsGatB, GatB	GLUTAMYL-TRNA(GLN)  AMIDOTRANSFERASE B SUBUNIT	glutamyl-tRNA(Gln) amidotransferase B subunit family protein, glutamyl-tRNA(Gln) amidotransferase B subunit	GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE B SUBUNIT	Osgatb	11	LOC_Os11g34210. Q2R2Z0. an ortholog of Arabidopsis GatB and yeast PET112.	 Vegetative organ - Root	Os11g0544800	LOC_Os11g34210.2, LOC_Os11g34210.1				GO:0051301 - cell division, GO:0080022 - primary root development, GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0006412 - translation, GO:0006754 - ATP biosynthetic process, GO:0009507 - chloroplast, GO:0009826 - unidimensional cell growth, GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	TO:0000656 - root development trait, TO:0002687 - cell elongation trait, TO:0000227 - root length, TO:0002692 - root meristem development	PO:0007520 - root development stage , PO:0000025 - root tip , PO:0007527 - 2 root meristem formation stage 
21033	_	HDA705	_	histone deacetylase 705			8		 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os08g0344100	LOC_Os08g25570.1				GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009845 - seed germination, GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific), GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
21034	_	RFC3	_	RFC subunit 3, restoration of fertility complex subunit 3			5	a DUF1620-containing and WD40-like repeat protein. GO: 0072546: ER membrane protein complex.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os05g0230600	LOC_Os05g14170.1				GO:0016020 - membrane, GO:0034975 - protein folding in endoplasmic reticulum, GO:0005739 - mitochondrion	TO:0000308 - male fertility restoration trait	
21035	_	OsAIR1, AIR1	_	arsenic-induced RING E3 ligase 1, ARSENIC-INDUCED RING E3 LIGASE 1, As-Induced RING E3 ligase 1			5	LOC_Os05g41795. TO:0006054: arsenic concentration.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0497600	LOC_Os05g41795.1				GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0006412 - translation, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005773 - vacuole, GO:0046685 - response to arsenic, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity	
21036	_	OsRFP	_	RING finger protein			8	LOC_Os08g31930. 	 Tolerance and resistance - Stress tolerance,  Other	Os08g0414200	LOC_Os08g31930.1				GO:0046685 - response to arsenic, GO:0008270 - zinc ion binding		
21037	HIRP1	OsRFP, OsHIRP1	HEAT-INDUCED RING FINGER PROTEIN 1	RING finger protein, heat-induced RING finger protein 1	HEAT-INDUCED RING FINGER PROTEIN 1		3		 Tolerance and resistance - Stress tolerance,  Other	Os03g0302200	LOC_Os03g19020.3, LOC_Os03g19020.2, LOC_Os03g19020.1				GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0008270 - zinc ion binding, GO:0046685 - response to arsenic	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
21038	_	OsRFP	_	RING finger protein			3	LOC_Os03g59540. 	 Tolerance and resistance - Stress tolerance,  Other	Os03g0809800	LOC_Os03g59540.1				GO:0046685 - response to arsenic		
21039	_	OsRFP	_	RING finger protein			7	LOC_Os07g41800. 	 Tolerance and resistance - Stress tolerance,  Other	Os07g0608800	LOC_Os07g41800.3, LOC_Os07g41800.2, LOC_Os07g41800.1				GO:0005778 - peroxisomal membrane, GO:0016558 - protein import into peroxisome matrix, GO:0008270 - zinc ion binding, GO:0005779 - integral to peroxisomal membrane, GO:0046685 - response to arsenic		
21040	LLB	OsLLB, LCMT, OsMTS1, MTS1, PLS3	LESION AND LAMINA BENDING 	leucine carboxyl methyltransferase, Premature leaf senescence 3, O-methyltransferase 1	LEUCINE CARBOXYL METHYLTRANSFERASE	llb, pls3	7	LOC_Os07g14350.	 Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os07g0247100 	LOC_Os07g14350.2, LOC_Os07g14350.1				GO:0009507 - chloroplast, GO:0005829 - cytosol, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0032259 - methylation, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009742 - brassinosteroid mediated signaling, GO:0042542 - response to hydrogen peroxide, GO:0048573 - photoperiodism, flowering, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0030187 - melatonin biosynthetic process, GO:0010150 - leaf senescence, GO:0008219 - cell death	TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content, TO:0000137 - days to heading, TO:0001015 - photosynthetic rate, TO:0000605 - hydrogen peroxide content, TO:0002670 - momilactone A content, TO:0000293 - chlorophyll-a content, TO:0002671 - momilactone B content, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0002668 - jasmonic acid content, TO:0002688 - leaf lamina joint bending, TO:0000063 - mimic response, TO:0000396 - grain yield, TO:0002616 - flowering time	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
21041	VAMP714	OsVAMP714	VESICLE-ASSOCIATED MEMBRANE PROTEIN 714	vesicle-associated membrane protein 714	VESICLE-ASSOCIATED MEMBRANE PROTEIN 714		10	membrane-trafficking protein.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os10g0154000 	LOC_Os10g06540.2, LOC_Os10g06540.1				GO:0009751 - response to salicylic acid stimulus, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0006887 - exocytosis, GO:0006906 - vesicle fusion, GO:0016021 - integral to membrane, GO:0031201 - SNARE complex, GO:0009507 - chloroplast, GO:0005774 - vacuolar membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000207 - plant height, TO:0002689 - leaf sheath length, TO:0000401 - plant growth hormone sensitivity	
21042	VAMP7111	OsVAMP7111	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111	vesicle-associated membrane protein 7111	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111		6			Os06g0174400 	LOC_Os06g07780.2, LOC_Os06g07780.1				GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0006887 - exocytosis, GO:0006906 - vesicle fusion, GO:0016021 - integral to membrane, GO:0031201 - SNARE complex		
21043	VAMP71112	OsVAMP7112	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7112	vesicle-associated membrane protein 7112	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7112		2			Os02g0803600 	LOC_Os02g55990.1				GO:0006887 - exocytosis, GO:0031201 - SNARE complex, GO:0006906 - vesicle fusion, GO:0016021 - integral to membrane, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity		PO:0009066 - anther 
21044	PI65	Pi65(t), Pi65	PYRICULARIA ORYZAE RESISTANCE 65	Magnaporthe grisea resistance-65, Blast resistance 65			11	A single dominant gene Pi65(t) was located on chromosome 11 from 30.42 Mb to 30.85 Mb. Based on the Nipponbare reference database in build 5, 20 predicted genes (Os11g0691700-Os11g0700100) were located within the interval of 0.43 Mb. 	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000074 - blast disease	
21045	_	OsCLT1, CLT1	_	CRT-like transporter 1		Osclt1	1	LOC_Os01g72570. GO:0071722: detoxification of arsenic-containing substance. GO:0071585: detoxification of cadmium ion. TO:0006054: arsenic concentration.	 Tolerance and resistance - Stress tolerance	Os01g0955700 	LOC_Os01g72570.3, LOC_Os01g72570.2, LOC_Os01g72570.1				GO:0034635 - glutathione transport, GO:0046938 - phytochelatin biosynthetic process, GO:0009636 - response to toxin, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0042170 - plastid membrane, GO:0016021 - integral to membrane	TO:0000207 - plant height, TO:0000227 - root length	
21046	_	OsCLT2, CLT2	_	CRT-like transporter 2			12			Os12g0511300 	LOC_Os12g32650.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
21047	_	TIC62, Os-TIC26, OsTIC26	_			Os-tic62	10	LOC_Os10g01044.		Os10g0100300	LOC_Os10g01044.3, LOC_Os10g01044.2, LOC_Os10g01044.1				GO:0009535 - chloroplast thylakoid membrane		
21048	NPC1	OsNPC1	NON-SPECIFIC PHOSPHOLIPASE C1 	Non-specific phospholipase C1	NON-SPECIFIC PHOSPHOLIPASE C1 		3	LOC_Os03g61130. GO:0071668: plant-type cell wall assembly. XB21 interacting protein (XB21IP).	 Biochemical character,  Vegetative organ - Culm,  Seed - Physiological traits - Shattering,  Tolerance and resistance - Stress tolerance	Os03g0826600	LOC_Os03g61130.1				GO:0009409 - response to cold, GO:0006651 - diacylglycerol biosynthetic process, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0016788 - hydrolase activity, acting on ester bonds	TO:0000303 - cold tolerance, TO:0000061 - node shattering, TO:0000473 - grain shattering, TO:0002641 - acid detergent fiber, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21049	NPC2	OsNPC2	NON-SPECIFIC PHOSPHOLIPASE C2	Non-specific phospholipase C2	NON-SPECIFIC PHOSPHOLIPASE C2		1	LOC_Os01g72520.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0955000	LOC_Os01g72520.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0001170 - seed development stage 
21050	NPC4	OsNPC3, OsNPC4, NPC3	NON-SPECIFIC PHOSPHOLIPASE C4	Non-specific phospholipase C4	NON-SPECIFIC PHOSPHOLIPASE C4		3	LOC_Os03g63580. OsNPC3 in Cao et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0852800	LOC_Os03g63580.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0016788 - hydrolase activity, acting on ester bonds	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009049 - inflorescence 
21051	NPC3	OsNPC4, OsNPC3, NPC4	NON-SPECIFIC PHOSPHOLIPASE C3	Non-specific phospholipase C3	NON-SPECIFIC PHOSPHOLIPASE C3		11	LOC_Os11g38050. OsNPC4 in Cao et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0593000	LOC_Os11g38050.1				GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0009536 - plastid	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root 
21052	NPC5	OsNPC6, OsNPC5, NPC6	NON-SPECIFIC PHOSPHOLIPASE C5	Non-specific phospholipase C5	NON-SPECIFIC PHOSPHOLIPASE C5		1	LOC_Os01g01190. OsNPC6 in Cao et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0102000	LOC_Os01g01190.1				GO:0009414 - response to water deprivation, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009049 - inflorescence 
21053	_	APC3, OsAPC3	_	ANAPHASE PROMOTING COMPLEX 3			6	LOC_Os06g41750. 		Os06g0622500	LOC_Os06g41750.1						
21054	_	APC8, OsAPC8	_	ANAPHASE PROMOTING COMPLEX 8			2	LOC_Os02g43920.		Os02g0656300	LOC_Os02g43920.1				GO:0051301 - cell division, GO:0005680 - anaphase-promoting complex, GO:0030071 - regulation of mitotic metaphase/anaphase transition		
21055	_	APC1, OsAPC1	_	ANAPHASE PROMOTING COMPLEX 1			5			Os05g0354300 					GO:0005680 - anaphase-promoting complex		
21056	_	APC4, OsAPC4	_	ANAPHASE PROMOTING COMPLEX 4			2	LOC_Os02g54490.		Os02g0785900	LOC_Os02g54490.1				GO:0030071 - regulation of mitotic metaphase/anaphase transition, GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0005680 - anaphase-promoting complex, GO:0016021 - integral to membrane		
21057	_	APC2, OsAPC2	_	ANAPHASE PROMOTING COMPLEX 2			4	LOC_Os04g40830.		Os04g0484800	LOC_Os04g40830.1				GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0005680 - anaphase-promoting complex, GO:0031625 - ubiquitin protein ligase binding		
21058	_	APC11, OsAPC11	_	ANAPHASE PROMOTING COMPLEX 11			3	LOC_Os03g19059. GO:0097602: cullin family protein binding. GO:0061630: ubiquitin protein ligase activity.		Os03g0302700	LOC_Os03g19059.1				GO:0008270 - zinc ion binding, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0045842 - positive regulation of mitotic metaphase/anaphase transition, GO:0005680 - anaphase-promoting complex		
21059	_		_	SAMBA			10	APC regulator. APC regulatory subunit.		Os10g0575950 							
21060	_		_	AP-1 complex subunit gamma-1			6	APC regulator. APC regulatory subunit. LOC_Os06g07090.		Os06g0167100	LOC_Os06g07090.2, LOC_Os06g07090.1				GO:0016192 - vesicle-mediated transport, GO:0008565 - protein transporter activity, GO:0005794 - Golgi apparatus, GO:0006886 - intracellular protein transport, GO:0030131 - clathrin adaptor complex		
21061	_		_	YT521-B domain protein			7	APC regulator. APC regulatory subunit. LOC_Os07g07490.		Os07g0170300	LOC_Os07g07490.2, LOC_Os07g07490.1				GO:0003723 - RNA binding		
21062	_		_	YT521-B domain protein			3	APC regulator. APC regulatory subunit. LOC_Os03g06240.		Os03g0158500	LOC_Os03g06240.2, LOC_Os03g06240.1				GO:0003723 - RNA binding		
21063	SEU	OsSEU, OsSEU1, SEU1	SEUSS	OsSEUSS, OsSEUSS 1, SEUSS 1			11	LOC_Os11g10060. APC regulator. APC regulatory subunit. a rice homolog of Arabidopsis thaliana SEU (SEUSS).	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0207000	LOC_Os11g10060.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
21064	_	MAT1	_	MENAGE A TROIS 1, MAT1 assembly factor			11	LOC_Os11g28350. CDK-activating kinase complex.		Os11g0473100	LOC_Os11g28350.1				GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0006281 - DNA repair, GO:0005675 - holo TFIIH complex, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0016301 - kinase activity		
21065	_		_	TFIIH p34 subunit			2	LOC_Os02g03340. TFIIH sub-complex.		Os02g0125800	LOC_Os02g03340.5, LOC_Os02g03340.4, LOC_Os02g03340.3, LOC_Os02g03340.2, LOC_Os02g03340.1				GO:0008135 - translation factor activity, nucleic acid binding, GO:0006412 - translation, GO:0003684 - damaged DNA binding, GO:0000439 - core TFIIH complex, GO:0005675 - holo TFIIH complex, GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain, GO:0006289 - nucleotide-excision repair		
21066	_		_	TFIIH p44 subunit			4	LOC_Os04g42990. TFIIH sub-complex.		Os04g0508900	LOC_Os04g42990.1				GO:0006289 - nucleotide-excision repair, GO:0006351 - transcription, DNA-dependent, GO:0000439 - core TFIIH complex		
21067	_		_	TFIIH p52 subunit			4	LOC_Os04g58350. TFIIH sub-complex.		Os04g0680000	LOC_Os04g58350.1				GO:0003690 - double-stranded DNA binding, GO:0004003 - ATP-dependent DNA helicase activity, GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain, GO:0000439 - core TFIIH complex, GO:0005675 - holo TFIIH complex, GO:0006289 - nucleotide-excision repair, GO:0003700 - transcription factor activity		
21068	_		_	TFIIH p62 subunit			8	LOC_Os08g25060. TFIIH sub-complex.		Os08g0338200	LOC_Os08g25060.1				GO:0006351 - transcription, DNA-dependent, GO:0006289 - nucleotide-excision repair, GO:0000439 - core TFIIH complex		
21069	PHT3	Os-PHT3, OsPHT3	PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 3	putrescine N-hydroxycinnamoyltransferase, putrescine hydroxycinnamoyl transferase 3	PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 3		9	combination of the best substrates: feruloyl-CoA/putrescine. KX430018, LOC_Os09g37180.	 Biochemical character	Os09g0543900	LOC_Os09g37180.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0009046 - flower , PO:0009005 - root 
21070	AHT1	Os-AHT1, OsAHT1	AGMATINE HYDROXYCINNAMOYL TRANSFERASE 1	agmatine hydroxycinnamoyl transferase 1	AGMATINE HYDROXYCINNAMOYL TRANSFERASE 1		4	one of the most structurally similar genes to NaAT1. LOC_Os04g56900. KX430015.	 Biochemical character	Os04g0664500	LOC_Os04g56900.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0009005 - root , PO:0009046 - flower 
21071	_	DEFL1, OsDEFL1, OsDf-01, Df-01	_	defensin-like 1			1		 Tolerance and resistance	Os01g0932700	LOC_Os01g70680.1				GO:0006952 - defense response		
21072	_	DEFL3, OsDEFL3, OsDf-03, Df-03	_	defensin-like 3			2		 Tolerance and resistance	Os02g0172500					GO:0006952 - defense response		
21073	_	DEFL4, OsDEFL4, OsDf-04, Df-04	_	defensin-like 4			2		 Tolerance and resistance	Os02g0172300	LOC_Os02g07624.1				GO:0050832 - defense response to fungus, GO:0031640 - killing of cells of another organism		
21074	_	DEFL5, OsDEFL5, OsDf-05, Df-05	_	defensin-like 5			2		 Tolerance and resistance	Os02g0172500					GO:0006952 - defense response		
21075	_	DEFL8, OsDEFL8, OsDf-08, Df-08	_	defensin-like 8			3		 Tolerance and resistance	Os03g0130300	LOC_Os03g03810.1				GO:0050832 - defense response to fungus, GO:0031640 - killing of cells of another organism		
21076	_	DEFL9, OsDEFL9, OsDf-09, Df-09	_	defensin-like 9			4		 Tolerance and resistance	Os04g0189400	LOC_Os04g11130.1				GO:0031640 - killing of cells of another organism, GO:0050832 - defense response to fungus		
21077	_	DEFL10, OsDEFL10, OsDf-10, Df-10	_	defensin-like 10			4	gamma thionin protein.	 Tolerance and resistance,  Tolerance and resistance - Insect resistance	Os04g0189800	LOC_Os04g11165.1				GO:0002213 - defense response to insect, GO:0006952 - defense response	TO:0000424 - brown planthopper resistance	
21078	_	DEFL11, OsDEFL11, OsDf-11, Df-11	_	defensin-like 11			4		 Tolerance and resistance	Os04g0189950					GO:0006952 - defense response		
21079	_	DEFL12, OsDEFL12, OsDf-12, Df-12	_	defensin-like 12			4		 Tolerance and resistance	Os04g0522100	LOC_Os04g44130.1				GO:0031640 - killing of cells of another organism, GO:0050832 - defense response to fungus		
21080	_	OsCCD1, CCD1	_	C-terminal centrin-like domain 1			6	LOC_Os06g46950. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os06g0683400	LOC_Os06g46950.1				GO:0005509 - calcium ion binding, GO:0009738 - abscisic acid mediated signaling, GO:0047484 - regulation of response to osmotic stress, GO:0051592 - response to calcium ion, GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000006 - calcium sensitivity	
21081	_	OsCKA2-4, CKA2-4	_	casein kinase II alpha-subunit 4, CK2 alpha-subunit 4, CK2 alpha subunit 4			3			Os03g0763000	LOC_Os03g55490.2, LOC_Os03g55490.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
21082	_	OsSIRP1, SIRP1	_	salt-induced RING Finger Protein 1			5	LOC_Os05g40980. GO:0061630 ubiquitin protein ligase activity. GO:1901001 negative regulation of response to salt stress.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0488800	LOC_Os05g40980.2, LOC_Os05g40980.1				GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0000209 - protein polyubiquitination	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
21083	_	OsRFP	_	RING Finger Protein			2	LOC_Os02g05692. 	 Tolerance and resistance - Stress tolerance	Os02g0150700	LOC_Os02g05692.2, LOC_Os02g05692.1				GO:0008270 - zinc ion binding, GO:0009651 - response to salt stress, GO:0046685 - response to arsenic	TO:0006001 - salt tolerance	
21084	_	OsRFP	_	RING Finger Protein			4	LOC_Os04g42980. 	 Tolerance and resistance - Stress tolerance	Os04g0508800	LOC_Os04g42980.2, LOC_Os04g42980.1				GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance	
21085	_	OsRFP	_	RING Finger Protein			2	LOC_Os02g57750. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0823300	LOC_Os02g57750.2, LOC_Os02g57750.1				GO:0009651 - response to salt stress, GO:0004842 - ubiquitin-protein ligase activity, GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity, GO:0009966 - regulation of signal transduction	TO:0006001 - salt tolerance	
21086	_	OsRFP	_	RING Finger Protein			5	LOC_Os05g39380. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0470700	LOC_Os05g39380.1				GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance	
21087	_	OsRFP	_	RING Finger Protein			5	LOC_Os05g41785 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21088	_	OsRFP	_	RING Finger Protein			6	LOC_Os06g21389 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21089	SNAT2	OsSNAT2	SEROTONIN N-ACETYLTRANSFERASE-2 	serotonin N-acetyltransferase-2, serotonin N-acetyltransferase 2	SEROTONIN N-ACETYLTRANSFERASE-2 		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0102000	LOC_Os08g01170.1				GO:0031248 - protein acetyltransferase complex, GO:0004596 - peptide alpha-N-acetyltransferase activity, GO:0006474 - N-terminal protein amino acid acetylation, GO:0009507 - chloroplast, GO:0009725 - response to hormone stimulus, GO:0046686 - response to cadmium ion, GO:0030187 - melatonin biosynthetic process, GO:0005737 - cytoplasm		
21090	SNAT1	OsSNAT1, OsSNAT, SNAT	SEROTONIN N-ACETYLTRANSFERASE-1	serotonin N-acetyltransferase-1, serotonin N-acetyltransferase 1	SEROTONIN N-ACETYLTRANSFERASE-1		5	LOC_Os05g40260. Q5KQI6. GO:1900056: negative regulation of leaf senescence. TO:0012012: leaf senescence duration.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os05g0481000	LOC_Os05g40260.1				GO:0031248 - protein acetyltransferase complex, GO:0004596 - peptide alpha-N-acetyltransferase activity, GO:0005634 - nucleus, GO:0030187 - melatonin biosynthetic process, GO:0046686 - response to cadmium ion, GO:0010150 - leaf senescence, GO:0006474 - N-terminal protein amino acid acetylation	TO:0000396 - grain yield, TO:0000152 - panicle number, TO:0000249 - leaf senescence	
21091	_	Sdt97	_				6	LOC_Os06g44050. semidwarf mutant gene. a single dominant gene locus non-allelic to sd-1.	 Biochemical character,  Vegetative organ - Culm	Os06g0649800	LOC_Os06g44050.1				GO:0006284 - base-excision repair, GO:0008725 - DNA-3-methyladenine glycosylase I activity, GO:0009686 - gibberellin biosynthetic process	TO:0000207 - plant height	
21092	HDAC6	OsHDAC6	HISTONE DEACETYLASE 6	histone deacetylase 6	HISTONE DEACETYLASE 6		6		 Biochemical character	Os06g0571100	LOC_Os06g37420.2, LOC_Os06g37420.1				GO:0016787 - hydrolase activity, GO:0009507 - chloroplast		
21093	HDAC10	OsHDAC10	HISTONE DEACETYLASE 10	histone deacetylase 10	HISTONE DEACETYLASE 10		12	ABA95964. rice ortholog of AtHDAC14.	 Biochemical character	Os12g0182700	LOC_Os12g08220.1				GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0016787 - hydrolase activity		
21094	LTS1 	OsNaPRT1, OsNaPRT1/LTS1, NaPRT1	LEAF TIP SENESCENCE 1  	Leaf Tip Senescence 1, Nicotinate Phosphoribosyltransferase 1, NaPRTase 1	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1	lts1	3	LOC_Os03g62110. TO:0000748 leaf anatomy and morphology trait.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os03g0837300	LOC_Os03g62110.3, LOC_Os03g62110.2				GO:0019358 - nicotinate nucleotide salvage, GO:0010150 - leaf senescence, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0043970 - histone H3-K9 acetylation, GO:0034355 - NAD salvage, GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity, GO:0004516 - nicotinate phosphoribosyltransferase activity, GO:0009435 - NAD biosynthetic process	TO:0000249 - leaf senescence, TO:0000207 - plant height, TO:0000605 - hydrogen peroxide content	
21095	NaPRT2	OsNaPRT2	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	Nicotinate Phosphoribosyltransferase 2, NaPRTase 2	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2		4	LOC_Os04g35060.	 Biochemical character	Os04g0429800	LOC_Os04g35060.1				GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity, GO:0009435 - NAD biosynthetic process, GO:0019358 - nicotinate nucleotide salvage, GO:0004516 - nicotinate phosphoribosyltransferase activity		
21096	NIC	OsNIC	NICOTINAMIDASE	nicotinamidase	NICOTINAMIDASE		2		 Biochemical character	Os02g0606800 	LOC_Os02g39400.1				GO:0016787 - hydrolase activity, GO:0008152 - metabolic process, GO:0034355 - NAD salvage		
21097	AL1 	AL1a, AL1b, AL1c	ALBINO LEAF 1			al1	3	sole octotricopeptide repeat protein (RAP).	 Vegetative organ - Leaf,  Vegetative organ - Root,  Coloration - Chlorophyll	Os03g0425000 	LOC_Os03g31150.3, LOC_Os03g31150.2, LOC_Os03g31150.1				GO:0009658 - chloroplast organization, GO:0010027 - thylakoid membrane organization, GO:0006364 - rRNA processing	TO:0000227 - root length, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000495 - chlorophyll content	
21098	_	OsBT, BT	_	BT1/BT2 ortholog		Osbt	1	Bric-a-Brac/Tramtrack/Broad (BTB) gene family. LOC_Os01g68020. GO:1902025 nitrate import. TO:0020093: nitrogen content.	 Other	Os01g0908200	LOC_Os01g68020.1				GO:0008270 - zinc ion binding, GO:0003712 - transcription cofactor activity, GO:0004402 - histone acetyltransferase activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0015706 - nitrate transport	TO:0000329 - tillering ability	
21099	DPB3-2	OsDPB3-2	DNA POLYMERASE II SUBUNIT B3-2	DNA polymerase II subunit B3-2	DNA POLYMERASE II SUBUNIT B3-2		3	LOC_Os03g63530. a rice DPB3-1 homologue.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0852300	LOC_Os03g63530.2, LOC_Os03g63530.1				GO:0009408 - response to heat, GO:0005634 - nucleus	TO:0000259 - heat tolerance	
21100	_	OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full	_	Phytochelatin Synthase, phytochelatin synthase 2			6	LOC_Os06g01260. KU670827, KU670828. OsPCS2 in Das et al. 2017. TO:0006059: cadmium concentration. TO:0006054: arsenic concentration. OsPCS1 (OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full) in Uraguchi et al. 2017. LC314598, LC314599. GO:0071585: detoxification of cadmium ion. GO:0071722: detoxification of arsenic-containing substance.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0102300	LOC_Os06g01260.2, LOC_Os06g01260.1				GO:0016756 - glutathione gamma-glutamylcysteinyltransferase activity, GO:0043181 - vacuolar sequestering, GO:0046685 - response to arsenic, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0046872 - metal ion binding, GO:0046938 - phytochelatin biosynthetic process	TO:0000080 - micronutrient sensitivity	PO:0009005 - root 
21102	_	OsSAT, SAT	_	serine acetyl transferase			1	LOC_Os01g52260. Q8W0E4.	 Biochemical character	Os01g0720700	LOC_Os01g52260.1				GO:0009001 - serine O-acetyltransferase activity, GO:0005737 - cytoplasm, GO:0006535 - cysteine biosynthetic process from serine, GO:0006790 - sulfur metabolic process		
21103	_	OsSAT, SAT	_	serine acetyl transferase			3	LOC_Os01g52260. Q10S58.	 Biochemical character	Os03g0133900	LOC_Os03g04140.2, LOC_Os03g04140.1				GO:0005737 - cytoplasm, GO:0006535 - cysteine biosynthetic process from serine, GO:0009001 - serine O-acetyltransferase activity, GO:0006790 - sulfur metabolic process		
21104	_	OsATPS, ATPS, OsaATPS, PAPSS	_	ATP sulfurylase, bi-functional 3'-phosphoadenosine 5'-phosphosulfate synthethase			3	LOC_Os03g53230. a predicted target gene of OsamiR395.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0743900	LOC_Os03g53230.1				GO:0000103 - sulfate assimilation, GO:0009409 - response to cold, GO:0006790 - sulfur metabolic process, GO:0004781 - sulfate adenylyltransferase (ATP) activity	TO:0000303 - cold tolerance	
21105	RALF1	OsRALF-1, OsRALF1, RALF-1	RAPID ALKALIZATION FACTOR 1	Rapid alkalization factor 1	RAPID ALKALIZATION FACTOR 1		11	LOC_Os11g26030.1		Os11g0447300	LOC_Os11g26030.1				GO:0005739 - mitochondrion, GO:0003924 - GTPase activity, GO:0042254 - ribosome biogenesis, GO:0005525 - GTP binding		PO:0009010 - seed 
21106	RALF2	OsRALF-2, OsRALF2, RALF-2	RAPID ALKALIZATION FACTOR 2	Rapid alkalization factor 2	RAPID ALKALIZATION FACTOR 2		4	LOC_Os04g28520. GO:0035336 long-chain fatty-acyl-CoA metabolic process.		Os04g0353600	LOC_Os04g28520.2, LOC_Os04g28520.1				GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity, GO:0010345 - suberin biosynthetic process, GO:0043231 - intracellular membrane-bounded organelle		PO:0009049 - inflorescence 
21107	RALF3	OsRALF-3, OsRALF3, RALF-3	RAPID ALKALIZATION FACTOR 3	Rapid alkalization factor 3	RAPID ALKALIZATION FACTOR 3		1	LOC_Os01g10470.		Os01g0201400	LOC_Os01g10470.1				GO:0005622 - intracellular, GO:0004871 - signal transducer activity, GO:0009506 - plasmodesma, GO:0019722 - calcium-mediated signaling		PO:0009049 - inflorescence 
21108	RALF4	OsRALF-4, OsRALF4, RALF-4	RAPID ALKALIZATION FACTOR 4	Rapid alkalization factor 4	RAPID ALKALIZATION FACTOR 4		1	LOC_Os01g25540.1		Os01g0357900	LOC_Os01g25540.1				GO:0009506 - plasmodesma, GO:0005622 - intracellular, GO:0004871 - signal transducer activity, GO:0019722 - calcium-mediated signaling		PO:0009049 - inflorescence , PO:0009005 - root 
21109	RALF5	OsRALF-5, OsRALF5, RALF-5	RAPID ALKALIZATION FACTOR 5	Rapid alkalization factor 5	RAPID ALKALIZATION FACTOR 5		1	LOC_Os01g15320		Os01g0257100	LOC_Os01g15320.1				GO:0019722 - calcium-mediated signaling, GO:0009506 - plasmodesma, GO:0005622 - intracellular, GO:0004871 - signal transducer activity		PO:0009005 - root , PO:0009049 - inflorescence 
21110	RALF6	OsRALF-6, OsRALF6, RALF-6	RAPID ALKALIZATION FACTOR 6	Rapid alkalization factor 6	RAPID ALKALIZATION FACTOR 6		1	LOC_Os01g25560.		Os01g0358100	LOC_Os01g25560.1				GO:0009506 - plasmodesma, GO:0019722 - calcium-mediated signaling, GO:0005622 - intracellular, GO:0004871 - signal transducer activity		PO:0009049 - inflorescence 
21111	RALF7	OsRALF-7, OsRALF7, RALF-7	RAPID ALKALIZATION FACTOR 7	Rapid alkalization factor 7	RAPID ALKALIZATION FACTOR 7		1	LOC_Os01g70690.		Os01g0932950	LOC_Os01g70690.1				GO:0005622 - intracellular, GO:0004871 - signal transducer activity, GO:0019722 - calcium-mediated signaling, GO:0009506 - plasmodesma		
21112	RALF8	OsRALF-8, OsRALF8, RALF-8	RAPID ALKALIZATION FACTOR 8	Rapid alkalization factor 8	RAPID ALKALIZATION FACTOR 8		2	LOC_Os02g44940.		Os02g0670500	LOC_Os02g44940.1				GO:0004871 - signal transducer activity, GO:0019722 - calcium-mediated signaling, GO:0009506 - plasmodesma, GO:0005622 - intracellular		PO:0009010 - seed 
21113	RALF9	OsRALF-9, OsRALF9, RALF-9	RAPID ALKALIZATION FACTOR 9	Rapid alkalization factor 9	RAPID ALKALIZATION FACTOR 9		3	LOC_Os03g22440.		Os03g0345000	LOC_Os03g22440.1						
21114	RALF10	OsRALF-10, OsRALF10, RALF-10	RAPID ALKALIZATION FACTOR 10	Rapid alkalization factor 10	RAPID ALKALIZATION FACTOR 10		4	LOC_Os04g28720.		Os04g0356000	LOC_Os04g28720.1						
21115	RALF11	OsRALF-11, OsRALF11, RALF-11	RAPID ALKALIZATION FACTOR 11	Rapid alkalization factor 11	RAPID ALKALIZATION FACTOR 11		4	LOC_Os04g28830.		Os04g0357400	LOC_Os04g28830.1						
21116	RALF12	OsRALF-12, OsRALF12, RALF-12	RAPID ALKALIZATION FACTOR 12	Rapid alkalization factor 12	RAPID ALKALIZATION FACTOR 12		4	LOC_Os04g28840.		Os04g0357500	LOC_Os04g28840.1						PO:0009010 - seed 
21117	RALF13	OsRALF-13, OsRALF13, RALF-13	RAPID ALKALIZATION FACTOR 13	Rapid alkalization factor 13	RAPID ALKALIZATION FACTOR 13		4	LOC_Os04g28850.		Os04g0357700	LOC_Os04g28850.1						PO:0009049 - inflorescence 
21118	RALF14	OsRALF-14, OsRALF14, RALF-14	RAPID ALKALIZATION FACTOR 14	Rapid alkalization factor 14	RAPID ALKALIZATION FACTOR 14		4	LOC_Os04g31410.		Os04g0382900	LOC_Os04g31410.1						PO:0009010 - seed , PO:0009049 - inflorescence 
21119	RALF15	OsRALF-15, OsRALF15, RALF-15	RAPID ALKALIZATION FACTOR 15	Rapid alkalization factor 15	RAPID ALKALIZATION FACTOR 15		4	LOC_Os04g31430.		Os04g0383100	LOC_Os04g31430.1						PO:0009010 - seed , PO:0020148 - shoot apical meristem , PO:0025034 - leaf 
21120	RALF16	OsRALF-16, OsRALF16, RALF-16	RAPID ALKALIZATION FACTOR 16	Rapid alkalization factor 16	RAPID ALKALIZATION FACTOR 16		4	LOC_Os04g31460.		Os04g0383700	LOC_Os04g31460.1						PO:0009049 - inflorescence 
21121	RALF17	OsRALF-17, OsRALF17, RALF-17	RAPID ALKALIZATION FACTOR 17	Rapid alkalization factor 17	RAPID ALKALIZATION FACTOR 17		4	LOC_Os04g31484.		Os04g0384000	LOC_Os04g31484.1						
21122	RALF18	OsRALF-18, OsRALF18, RALF-18	RAPID ALKALIZATION FACTOR 18	Rapid alkalization factor 18	RAPID ALKALIZATION FACTOR 18		4	LOC_Os04g31520.			LOC_Os04g31520						PO:0009049 - inflorescence , PO:0009005 - root 
21123	RALF19	OsRALF-19, OsRALF19, RALF-19	RAPID ALKALIZATION FACTOR 19	Rapid alkalization factor 19	RAPID ALKALIZATION FACTOR 19		4	LOC_Os04g31550.		Os04g0384800	LOC_Os04g31550.1						PO:0009049 - inflorescence 
21124	RALF20	OsRALF-20, OsRALF20, RALF-20	RAPID ALKALIZATION FACTOR 20	Rapid alkalization factor 20	RAPID ALKALIZATION FACTOR 20		4	LOC_Os04g54090.		Os04g0633400	LOC_Os04g54090.1						PO:0009010 - seed 
21125	RALF21	OsRALF-21, OsRALF21, RALF-21	RAPID ALKALIZATION FACTOR 21	Rapid alkalization factor 21	RAPID ALKALIZATION FACTOR 21		5	LOC_Os05g11330.		Os05g0203000	LOC_Os05g11330.1						PO:0009049 - inflorescence 
21126	RALF23	OsRALF-23, OsRALF23, RALF-23	RAPID ALKALIZATION FACTOR 23	Rapid alkalization factor 23	RAPID ALKALIZATION FACTOR 23		7	LOC_Os07g13310.		Os07g0237200	LOC_Os07g13310.1						PO:0009049 - inflorescence 
21127	RALF24	OsRALF-24, OsRALF24, RALF-24	RAPID ALKALIZATION FACTOR 24	Rapid alkalization factor 24	RAPID ALKALIZATION FACTOR 24		7	LOC_Os07g13380.		Os07g0238000	LOC_Os07g13380.1						PO:0009010 - seed 
21128	RALF25	OsRALF-25, OsRALF25, RALF-25	RAPID ALKALIZATION FACTOR 25	Rapid alkalization factor 25	RAPID ALKALIZATION FACTOR 25		7	LOC_Os07g13440.		Os07g0238500	LOC_Os07g13440.1						
21129	RALF26	OsRALF-26, OsRALF26, RALF-26	RAPID ALKALIZATION FACTOR 26	Rapid alkalization factor 26	RAPID ALKALIZATION FACTOR 26		7	LOC_Os07g13450.		Os07g0238600	LOC_Os07g13450.1						PO:0009049 - inflorescence 
21130	RALF27	OsRALF-27, OsRALF27, RALF-27	RAPID ALKALIZATION FACTOR 27	Rapid alkalization factor 27	RAPID ALKALIZATION FACTOR 27		10	LOC_Os10g18170		Os10g0328900	LOC_Os10g18170.1				GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0009506 - plasmodesma, GO:0019722 - calcium-mediated signaling		PO:0009005 - root 
21131	RALF29	OsRALF-29, OsRALF29, RALF-29	RAPID ALKALIZATION FACTOR 29	Rapid alkalization factor 29	RAPID ALKALIZATION FACTOR 29		10	LOC_Os10g41999.		Os10g0569500	LOC_Os10g41999.1						PO:0009010 - seed 
21132	RALF31	OsRALF-31, OsRALF31, RALF-31	RAPID ALKALIZATION FACTOR 31	Rapid alkalization factor 31	RAPID ALKALIZATION FACTOR 31		11	LOC_Os11g26190.		Os11g0448700	LOC_Os11g26190.1						PO:0009049 - inflorescence 
21133	RALF32	OsRALF-32, OsRALF32, RALF-32	RAPID ALKALIZATION FACTOR 32	Rapid alkalization factor 32	RAPID ALKALIZATION FACTOR 32		11	LOC_Os11g26340.		Os11g0449600	LOC_Os11g26340.1						PO:0009049 - inflorescence 
21134	RALF33	OsRALF-33, OsRALF33, RALF-33	RAPID ALKALIZATION FACTOR 33	Rapid alkalization factor 33	RAPID ALKALIZATION FACTOR 33		11	LOC_Os11g26880.		Os11g0456000	LOC_Os11g26880.1				GO:0004871 - signal transducer activity, GO:0019722 - calcium-mediated signaling, GO:0005622 - intracellular, GO:0009506 - plasmodesma		PO:0009049 - inflorescence 
21135	RALF34	OsRALF-34, OsRALF34, RALF-34	RAPID ALKALIZATION FACTOR 34	Rapid alkalization factor 34	RAPID ALKALIZATION FACTOR 34		12	LOC_Os12g11660.		Os12g0218300	LOC_Os12g11660.1						PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009010 - seed , PO:0020148 - shoot apical meristem 
21136	RALF35	OsRALF-35, OsRALF35, RALF-35	RAPID ALKALIZATION FACTOR 35	Rapid alkalization factor 35	RAPID ALKALIZATION FACTOR 35		12	LOC_Os12g12000.		Os12g0221600	LOC_Os12g12000.1						PO:0025034 - leaf 
21137	RALF36	OsRALF-36, OsRALF36, RALF-36	RAPID ALKALIZATION FACTOR 36	Rapid alkalization factor 36	RAPID ALKALIZATION FACTOR 36		12	LOC_Os12g21760.			LOC_Os12g21760						
21138	RALF37	OsRALF-37, OsRALF37, RALF-37	RAPID ALKALIZATION FACTOR 37	Rapid alkalization factor 37	RAPID ALKALIZATION FACTOR 37		12	LOC_Os12g35670.		Os12g0541700	LOC_Os12g35670.1				GO:0005622 - intracellular, GO:0019722 - calcium-mediated signaling, GO:0004871 - signal transducer activity, GO:0009506 - plasmodesma		PO:0009049 - inflorescence , PO:0009010 - seed , PO:0020148 - shoot apical meristem , PO:0009005 - root 
21139	RALF38	OsRALF-38, OsRALF38, RALF-38	RAPID ALKALIZATION FACTOR 38	Rapid alkalization factor 38	RAPID ALKALIZATION FACTOR 38		12	LOC_Os12g35690.		Os12g0542000	LOC_Os12g35690.1				GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0009506 - plasmodesma, GO:0019722 - calcium-mediated signaling		PO:0009049 - inflorescence 
21140	RALF39	OsRALF-39, OsRALF39, RALF-39	RAPID ALKALIZATION FACTOR 39	Rapid alkalization factor 39	RAPID ALKALIZATION FACTOR 39		12	LOC_Os12g38330.		Os12g0571400	LOC_Os12g38330.1						
21141	RALF40	OsRALF-40, OsRALF40, RALF-40	RAPID ALKALIZATION FACTOR 40	Rapid alkalization factor 40	RAPID ALKALIZATION FACTOR 40		12	LOC_Os12g38340.		Os12g0571500	LOC_Os12g38340.1						PO:0009010 - seed 
21142	RALF41	OsRALF-41, OsRALF41, RALF-41	RAPID ALKALIZATION FACTOR 41	Rapid alkalization factor 41	RAPID ALKALIZATION FACTOR 41		12	LOC_Os12g38350.		Os12g0571600	LOC_Os12g38350.1						
21143	RALF42	OsRALF-42, OsRALF42, RALF-42	RAPID ALKALIZATION FACTOR 42	Rapid alkalization factor 42	RAPID ALKALIZATION FACTOR 42		12	LOC_Os12g38360.		Os12g0571700	LOC_Os12g38360.1						PO:0009049 - inflorescence 
21144	RALF43	OsRALF-43, OsRALF43, RALF-43	RAPID ALKALIZATION FACTOR 43	Rapid alkalization factor 43	RAPID ALKALIZATION FACTOR 43		12	LOC_Os12g38370.			LOC_Os12g38370						PO:0009049 - inflorescence , PO:0009005 - root 
21145	_	OsBDG1, BDG1	_	OsBUL1 DOWNSTREAM GENE1, OsBUL1 DOWNSTREAM GENE 1, BUL1 DOWNSTREAM GENE1, BUL1 DOWNSTREAM GENE 1			11	LOC_Os11g31530. similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1. a small protein with short leucine-rich- repeats.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os11g0514400 	LOC_Os11g31530.1				GO:0016301 - kinase activity	TO:0000206 - leaf angle, TO:0000397 - grain size	PO:0009049 - inflorescence , PO:0020039 - leaf lamina 
21146	PRF2	OsPRF2	PROFILIN 2	Profilin-2, Profilin 2	PROFILIN 2		6	LOC_Os06g05880. Q5VMJ3.		Os06g0152100	LOC_Os06g05880.1				GO:0003785 - actin monomer binding, GO:0005938 - cell cortex, GO:0015629 - actin cytoskeleton, GO:0042989 - sequestering of actin monomers		
21147	_	OsRFP	_	RING finger protein			1	LOC_Os01g15630. 		Os01g0261100	LOC_Os01g15630.2, LOC_Os01g15630.1				GO:0008270 - zinc ion binding		
21148	_	OsRFP, OsZFP1	_	RING finger protein, E3 ligase OsZFP1			1	LOC_Os01g47740. a zinc finger C3H2C3-type domain-containing protein. E3 ligase. GO:0061630 ubiquitin protein ligase activity.	 Biochemical character	Os01g0667700	LOC_Os01g47740.4, LOC_Os01g47740.3, LOC_Os01g47740.2, LOC_Os01g47740.1				GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0000209 - protein polyubiquitination, GO:0008270 - zinc ion binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
21149	_	OsRFP	_	RING finger protein			1	LOC_Os01g70160. GO:0061630 ubiquitin protein ligase activity.		Os01g0926200	LOC_Os01g70160.1				GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0000209 - protein polyubiquitination		
21150	_	OsRFP	_	RING finger protein			3	LOC_Os03g20980. 		Os03g0326300	LOC_Os03g20980.1				GO:0008270 - zinc ion binding		
21151	_	OsRFP	_	RING finger protein			3	LOC_Os03g22830. GO:0061630 ubiquitin protein ligase activity.		Os03g0351800	LOC_Os03g22830.2, LOC_Os03g22830.1				GO:0000209 - protein polyubiquitination, GO:0008270 - zinc ion binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process		
21152	_	OsRFP	_	RING finger protein			3	LOC_Os03g59760. GO:0061630 ubiquitin protein ligase activity.		Os03g0812200	LOC_Os03g59760.2, LOC_Os03g59760.1				GO:0000209 - protein polyubiquitination, GO:0008270 - zinc ion binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process		
21153	_	OsRFP	_	RING finger protein			4	LOC_Os04g10680. 		Os04g0185500	LOC_Os04g10680.5, LOC_Os04g10680.4, LOC_Os04g10680.3, LOC_Os04g10680.2, LOC_Os04g10680.1				GO:0008270 - zinc ion binding		
21154	_	OsRFP	_	RING finger protein			4	LOC_Os04g43220. GO:0061630 ubiquitin protein ligase activity.		Os04g0511600	LOC_Os04g43220.4, LOC_Os04g43220.3, LOC_Os04g43220.2, LOC_Os04g43220.1				GO:0000209 - protein polyubiquitination, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005886 - plasma membrane, GO:0048364 - root development, GO:0008270 - zinc ion binding, GO:0051301 - cell division, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process		
21155	_	OsRFP	_	RING finger protein			5	LOC_Os05g01940. GO:0061630 ubiquitin protein ligase activity.		Os05g0110000	LOC_Os05g01940.1				GO:0000209 - protein polyubiquitination, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
21156	_	OsRFP	_	RING finger protein			5	LOC_Os05g32350. GO:0061630 ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance	Os05g0389600	LOC_Os05g32350.1				GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0046685 - response to arsenic		
21157	_	OsRFP, OsMAR1, MAR1	_	RING finger protein, microtubule-associated RING  nger protein 1			6	LOC_Os06g48040. GO:1901001: negative regulation of response to salt stress.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os06g0695600	LOC_Os06g48040.1				GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0009651 - response to salt stress, GO:0046685 - response to arsenic	TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
21158	_	OsRFP	_	RING finger protein			8	LOC_Os08g14320. 	 Tolerance and resistance - Stress tolerance	Os08g0241400	LOC_Os08g14320.1				GO:0008270 - zinc ion binding, GO:0046685 - response to arsenic		
21159	_	OsRFP, RFP, OsAIR2, AIR2	_	RING finger protein, arsenic-induced RING finger E3 ligase 2, As-Induced RING E3 ligase 2			11	LOC_Os11g36430. GO:0061630 ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance	Os11g0572500	LOC_Os11g36430.5, LOC_Os11g36430.3, LOC_Os11g36430.2, LOC_Os11g36430.1				GO:0009408 - response to heat, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009651 - response to salt stress, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0009845 - seed germination, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0000209 - protein polyubiquitination, GO:0046685 - response to arsenic	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000227 - root length	
21160	_	OsRFP	_	RING finger protein			1	LOC_Os01g61420. 		Os01g0830200	LOC_Os01g61420.1				GO:0008270 - zinc ion binding		
21161	_	OsRFP	_	RING finger protein			1	LOC_Os01g68060. 		Os01g0908700	LOC_Os01g68060.1				GO:0008270 - zinc ion binding		
21162	_	OsRFP	_	RING finger protein			1	LOC_Os01g72480. 		Os01g0954400	LOC_Os01g72480.1				GO:0008270 - zinc ion binding		
21163	_	OsRFP	_	RING finger protein			3	LOC_Os03g01720. 		Os03g0107500	LOC_Os03g01720.1				GO:0005737 - cytoplasm, GO:0009966 - regulation of signal transduction, GO:0004842 - ubiquitin-protein ligase activity		
21164	_	OsRFP	_	RING finger protein			3	LOC_Os03g43360. 		Os03g0632800	LOC_Os03g43360.2				GO:0008270 - zinc ion binding		
21165	_	OsRFP, OsSIRP2, SIRP2	_	RING finger protein, salt-induced RING E3 ligase 2, salt induced Really Interesting New Gene finger protein 2			3	LOC_Os03g58390. 	 Tolerance and resistance - Stress tolerance	Os03g0798200	LOC_Os03g58390.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0008270 - zinc ion binding	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
21166	_	OsRFP	_	RING finger protein			6	LOC_Os06g17280. 		Os06g0283200	LOC_Os06g17280.1				GO:0008270 - zinc ion binding		
21167	_	OsRFP	_	RING finger protein			7	LOC_Os07g31650. 		Os07g0499800	LOC_Os07g31650.1				GO:0008270 - zinc ion binding		
21168	_	OsRFP	_	RING finger protein			7	LOC_Os07g49030. 		Os07g0690300	LOC_Os07g49030.2, LOC_Os07g49030.1				GO:0008270 - zinc ion binding		
21169	_	OsRFP	_	RING finger protein			10	LOC_Os10g35190. GO:0061630 ubiquitin protein ligase activity.		Os10g0494500	LOC_Os10g35190.1				GO:0046872 - metal ion binding, GO:0030155 - regulation of cell adhesion		
21170	SADR1	OsRFP, OsSADR1	SALT, ABA AND DROUGHT STRESS-INDUCED RING FINGER PROTEIN 1	"RING finger protein, \"Salt-, ABA- and Drought-Induced RING Finger Protein 1\", \"salt, ABA and drought stress-induced RING finger protein 1\""	SALT, ABA AND DROUGHT STRESS-INDUCED RING FINGER PROTEIN 1		11	LOC_Os11g07450. GO:1901001: negative regulation of response to salt stress. GO:0090333: regulation of stomatal closure. orthologous genes: Arabidopsis (At1G47570), Zea mays (GRMZ2G000014) and Brachypodium distachyon (Bradi4G24480).	 Tolerance and resistance - Stress tolerance	Os11g0175500	LOC_Os11g07450.2, LOC_Os11g07450.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0010118 - stomatal movement, GO:0004842 - ubiquitin-protein ligase activity, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0007093 - mitotic cell cycle checkpoint, GO:0008270 - zinc ion binding	TO:0000227 - root length, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
21171	_	OsRFP	_	RING finger protein			12	LOC_Os12g10700. 		Os12g0209700	LOC_Os12g10700.1				GO:0008270 - zinc ion binding		
21172	_	OsRFP	_	RING finger protein			12	LOC_Os12g16690. 		Os12g0267900	LOC_Os12g16690.1				GO:0008270 - zinc ion binding		
21173	EBR1	OsRFP	ENHANCED BLIGHT AND BLAST RESISTANCE 1	RING finger protein, enhanced blight and blast resistance 1		ebr1	5	LOC_Os05g19970. KX196161. a RING-type E3 ligase.	 Tolerance and resistance - Disease resistance	Os05g0279400	LOC_Os05g19970.1				GO:0031348 - negative regulation of defense response, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0060548 - negative regulation of cell death	TO:0000207 - plant height, TO:0000112 - disease resistance, TO:0000396 - grain yield, TO:0000346 - tiller number	
21176	_	IBP1.2	_				1	Bowman-Birk trypsin inhibitor. Q0JR25.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0124400					GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region, GO:0010106 - cellular response to iron ion starvation	TO:0000224 - iron sensitivity	
21177	_	OsDAD1;2, DAD1;2	_				8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0143600 	LOC_Os08g04800.1				GO:0016787 - hydrolase activity, GO:0010106 - cellular response to iron ion starvation, GO:0009695 - jasmonic acid biosynthetic process, GO:0006629 - lipid metabolic process	TO:0000224 - iron sensitivity	
21178	_	OsDAD1;3, DAD1;3	_				8		 Biochemical character	Os02g0653900  	LOC_Os02g43700.1				GO:0009695 - jasmonic acid biosynthetic process, GO:0006629 - lipid metabolic process, GO:0016787 - hydrolase activity		
21179	_	OsDAD1;4, DAD1;4	_				10		 Biochemical character	Os10g0562200  	LOC_Os10g41270.1				GO:0009695 - jasmonic acid biosynthetic process, GO:0006629 - lipid metabolic process, GO:0016787 - hydrolase activity		
21180	_	OsTDL1A, TDL1A, MIL2, OsTDL1A/MIL2, OsTDL1a	_	TPD1-like 1A, MICROSPORELESS2, MICROSPORELESS 2		ostdl1a, mil2	12	LOC_Os12g28750. Q2QR54. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os12g0472500	LOC_Os12g28750.1				GO:0048658 - tapetal layer development, GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat, GO:0009556 - microsporogenesis, GO:0010480 - microsporocyte differentiation, GO:0048653 - anther development, GO:0010234 - tapetal cell fate specification	TO:0000259 - heat tolerance	PO:0009005 - root , PO:0009051 - spikelet , PO:0009066 - anther , PO:0001004 - anther development stage , PO:0020003 - plant ovule 
21181	_	OsNAPL6, NAPL6	_				2	a histone chaperone of the NAP superfamily. EEC73468. B8AEC1, Q69JW2.	 Tolerance and resistance - Stress tolerance	Os02g0576700	LOC_Os02g36710.1				GO:0006334 - nucleosome assembly, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006974 - response to DNA damage stimulus	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	
21182	_	OsM1, M1, OsM1a, OsM1b OsM1c	_	single domain MDC protein 1, single MATH domain containing protein 1			1	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os01g56800.1, LOC_Os01g56800.2, LOC_Os01g56800.3.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os01g0775300	LOC_Os01g56800.3, LOC_Os01g56800.2, LOC_Os01g56800.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0009607 - response to biotic stimulus	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance	
21183	_	OsM2, M2, OsM2a, OsUBP5-1, UBP5-1, OsUBP7, UBP7	_	single domain MDC protein 2, single MATH domain containing protein 2, ubiquitin-specific processing protease 5-1, Ubiquitin-specific protease 7			1	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP7 in Ma et al. 2019.	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os01g0771400	LOC_Os01g56490.1				GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0016579 - protein deubiquitination	TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	PO:0009029 - stamen 
21184	_	OsM3, M3, OsM3a	_	single domain MDC protein 3, single MATH domain containing protein 3			4	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os04g18830.1.		Os04g0259300	LOC_Os04g18830.1				GO:0005634 - nucleus		
21185	_	OsM4, M4, OsM4a	_	single domain MDC protein 4, single MATH domain containing protein 4			5	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os05g43280.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os05g0508700	LOC_Os05g43280.1				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus	TO:0000179 - biotic stress trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21186	_	OsM5, M5, OsM5a, OsUBP5-2, UBP5-2, OsUBP13, UBP13	_	single domain MDC protein 5, single MATH domain containing protein 5, ubiquitin-specific processing protease 5-2, Ubiquitin-specific protease 13			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. OsUBP13 in Ma et al. 2019.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0163800	LOC_Os07g06950.1				GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	
21187	_	OsM6, M6, OsM6a	_	single domain MDC protein 6, single MATH domain containing protein 6			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os07g20130.1.		Os07g0297100	LOC_Os07g20130.1				GO:0009507 - chloroplast		
21188	_	OsM7, M7, OsM7a	_	single domain MDC protein 7, single MATH domain containing protein 7			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os10g28130.1.		Os10g0416900	LOC_Os10g28130.1				GO:0005737 - cytoplasm		
21189	_	OsM8, M8, OsM8a	_	single domain MDC protein 8, single MATH domain containing protein 8			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g41360.1.		Os11g0631600	LOC_Os11g41360.1				GO:0009507 - chloroplast		
21190	_	OsM9, M9, OsM9a	_	single domain MDC protein 9, single MATH domain containing protein 9			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g27030.1.		Os11g0458600	LOC_Os11g27030.1				GO:0005737 - cytoplasm		
21191	_	OsM10, M10, OsM10a	_	single domain MDC protein 10, single MATH domain containing protein 10			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g41230.1.			LOC_Os11g41230				GO:0005739 - mitochondrion		
21192	_	OsM11, M11, OsM11a	_	single domain MDC protein 11, single MATH domain containing protein 11			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g41240.1.			LOC_Os11g41240				GO:0009507 - chloroplast		
21193	_	OsM12, M12, OsM12a	_	single domain MDC protein 12, single MATH domain containing protein 12			12	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os12g40520.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os12g0597200	LOC_Os12g40520.1				GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	
21194	_	OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12	_	single domain MDC protein 13, single MATH domain containing protein 13, ubiquitin-specific processing protease 5-4, Ubiquitin-specific protease 12			12	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP12 in Ma et al. 2019.	 Biochemical character,  Tolerance and resistance	Os12g0489100/Os12g0489200	LOC_Os12g30540.1				GO:0005829 - cytosol, GO:0031647 - regulation of protein stability, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009607 - response to biotic stimulus, GO:0016579 - protein deubiquitination	TO:0000179 - biotic stress trait	
21195	_	OsMB1, MB1	_	MATH-BTB protein 1, MDC protein with a BTB domain 1, MDC protein having BTB domain 1			2	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os02g20690.1.		Os02g0310500	LOC_Os02g20690.1				GO:0005634 - nucleus		
21196	_	OsMB2, MB2	_	MATH-BTB protein 2, MDC protein with a BTB domain 2, MDC protein having BTB domain 2			2	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os02g20620.1.		Os02g0309500	LOC_Os02g20620.1				GO:0005634 - nucleus		
21197	_	OsMB3, MB3	_	MATH-BTB protein 3, MDC protein with a BTB domain 3, MDC protein having BTB domain 3			2	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os02g20720.1.		Os02g0311150	LOC_Os02g20720.1				GO:0005737 - cytoplasm		
21198	_	OsMB4, MB4	_	MATH-BTB protein 4, MDC protein with a BTB domain 4, MDC protein having BTB domain 4			2	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os02g20590.1.		Os02g0309200	LOC_Os02g20590.1				GO:0009507 - chloroplast		
21199	_	OsMB5, MB5, OsMB5a, OsMB5b	_	MATH-BTB protein 5, MDC protein with a BTB domain 5, MDC protein having BTB domain 5			3	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os03g57854.1, LOC_Os03g57854.2.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0792500	LOC_Os03g57854.2, LOC_Os03g57854.1				GO:0009607 - response to biotic stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	
21200	_	OsMB6, MB6	_	MATH-BTB protein 6, MDC protein with a BTB domain 6, MDC protein having BTB domain 6			4	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os04g53410.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os04g0625600	LOC_Os04g53410.1				GO:0009607 - response to biotic stimulus, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
21201	_	OsMB7, MB7	_	MATH-BTB protein 7, MDC protein with a BTB domain 7, MDC protein having BTB domain 7			4	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os04g35310.1.			LOC_Os04g35310				GO:0009507 - chloroplast		
21202	_	OsMB8, MB8	_	MATH-BTB protein 8, MDC protein with a BTB domain 8, MDC protein having BTB domain 8			6	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os06g45730.1.		Os06g0668400	LOC_Os06g45730.1				GO:0009507 - chloroplast		
21203	_	OsMB9, MB9	_	MATH-BTB protein 9, MDC protein with a BTB domain 9, MDC protein having BTB domain 9			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os07g01140.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0101400	LOC_Os07g01140.1				GO:0009607 - response to biotic stimulus, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0009651 - response to salt stress	TO:0000179 - biotic stress trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21204	_	OsMB10, MB10, OsMB10a, OsMB10b	_	MATH-BTB protein 10, MDC protein with a BTB domain 10, MDC protein having BTB domain 10			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os07g07270.1, LOC_Os07g07270.2.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0167200	LOC_Os07g07270.2, LOC_Os07g07270.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0009607 - response to biotic stimulus	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
21205	_	OsMB11, MB11	_	MATH-BTB protein 11, MDC protein with a BTB domain 11, MDC protein having BTB domain 11			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os07g46160.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0655300	LOC_Os07g46160.1				GO:0009507 - chloroplast, GO:0009607 - response to biotic stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
21206	_	OsMB12, MB12	_	MATH-BTB protein 12, MDC protein with a BTB domain 12, MDC protein having BTB domain 12			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g31430.1.	 Tolerance and resistance - Stress tolerance	Os08g0406600	LOC_Os08g31430.1				GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21207	_	OsMB13, MB13	_	MATH-BTB protein 13, MDC protein with a BTB domain 13, MDC protein having BTB domain 13			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g12960.1.		Os08g0226000	LOC_Os08g12960.1				GO:0005737 - cytoplasm		
21208	_	OsMB14, MB14	_	MATH-BTB protein 14, MDC protein with a BTB domain 14, MDC protein having BTB domain 14			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g31450.1.			LOC_Os08g31450				GO:0005737 - cytoplasm		
21209	_	OsMB15, MB15	_	MATH-BTB protein 15, MDC protein with a BTB domain 15, MDC protein having BTB domain 15			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g13180.1.		Os08g0228200	LOC_Os08g13180.1				GO:0009507 - chloroplast		
21210	_	OsMB16, MB16	_	MATH-BTB protein 16, MDC protein with a BTB domain 16, MDC protein having BTB domain 16			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g13030.1.		Os08g0226800	LOC_Os08g13030.1				GO:0009507 - chloroplast		
21211	_	OsMB17, MB17	_	MATH-BTB protein 17, MDC protein with a BTB domain 17, MDC protein having BTB domain 17			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g03490.1.		Os08g0128900	LOC_Os08g03490.1				GO:0009507 - chloroplast		
21212	_	OsMB18, MB18	_	MATH-BTB protein 18, MDC protein with a BTB domain 18, MDC protein having BTB domain 18			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g03470.1.		Os08g0128700	LOC_Os08g03470.1				GO:0009507 - chloroplast		
21213	_	OsMB19, MB19	_	MATH-BTB protein 19, MDC protein with a BTB domain 19, MDC protein having BTB domain 19			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g13000.1.	 Tolerance and resistance - Stress tolerance	Os08g0226400	LOC_Os08g13000.1				GO:0009408 - response to heat, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
21214	_	OsMB20, MB20, OsMB20a, OsMB20b	_	MATH-BTB protein 20, MDC protein with a BTB domain 20, MDC protein having BTB domain 20			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29180.1, LOC_Os10g29180.2. OsMB20a (cytoplasm), OsMB20b (chloroplast).	 Tolerance and resistance - Stress tolerance	Os10g0427300	LOC_Os10g29180.2, LOC_Os10g29180.1				GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0009507 - chloroplast	TO:0000259 - heat tolerance	
21215	_	OsMB21, MB21	_	MATH-BTB protein 21, MDC protein with a BTB domain 21, MDC protein having BTB domain 21			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29230.1.			LOC_Os10g29230				GO:0009507 - chloroplast		
21216	_	OsMB22, MB22	_	MATH-BTB protein 22, MDC protein with a BTB domain 22, MDC protein having BTB domain 22			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29310.1.	 Tolerance and resistance - Stress tolerance	Os10g0428500	LOC_Os10g29310.1				GO:0009408 - response to heat, GO:0005739 - mitochondrion	TO:0000259 - heat tolerance	
21217	_	OsMB23, MB23	_	MATH-BTB protein 23, MDC protein with a BTB domain 23, MDC protein having BTB domain 23			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29220.1.		Os10g0427600	LOC_Os10g29220.1				GO:0009507 - chloroplast		
21218	_	OsMB24, MB24	_	MATH-BTB protein 24, MDC protein with a BTB domain 24, MDC protein having BTB domain 24			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29050.1.		Os10g0425900	LOC_Os10g29050.2, LOC_Os10g29050.1				GO:0009507 - chloroplast		
21219	_	OsMB25, MB25	_	MATH-BTB protein 25, MDC protein with a BTB domain 25, MDC protein having BTB domain 25			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29100.1.			LOC_Os10g29100				GO:0009507 - chloroplast		
21220	_	OsMB26, MB26	_	MATH-BTB protein 26, MDC protein with a BTB domain 26, MDC protein having BTB domain 26			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29020.1.		Os10g0425700	LOC_Os10g29020.1				GO:0009507 - chloroplast		
21221	_	OsMB27, MB27	_	MATH-BTB protein 27, MDC protein with a BTB domain 27, MDC protein having BTB domain 27			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29330.1.		Os10g0428900	LOC_Os10g29330.1				GO:0009507 - chloroplast		
21222	_	OsMB28, MB28	_	MATH-BTB protein 28, MDC protein with a BTB domain 28, MDC protein having BTB domain 28			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28860.1.		Os10g0424400	LOC_Os10g28860.1				GO:0005737 - cytoplasm		
21223	_	OsMB29, MB29	_	MATH-BTB protein 29, MDC protein with a BTB domain 29, MDC protein having BTB domain 29			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29110.1.		Os10g0426600	LOC_Os10g29110.1				GO:0009507 - chloroplast		
21224	_	OsMB30, MB30	_	MATH-BTB protein 30, MDC protein with a BTB domain 30, MDC protein having BTB domain 30			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29380.1.		Os10g0429300	LOC_Os10g29380.1				GO:0005737 - cytoplasm		
21225	_	OsMB31, MB31	_	MATH-BTB protein 31, MDC protein with a BTB domain 31, MDC protein having BTB domain 31			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29150.1.			LOC_Os10g29150				GO:0009507 - chloroplast		
21226	_	OsMB32, MB32	_	MATH-BTB protein 32, MDC protein with a BTB domain 32, MDC protein having BTB domain 32			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28990.1.			LOC_Os10g28990				GO:0009507 - chloroplast		
21227	_	OsMB33, MB33	_	MATH-BTB protein 33, MDC protein with a BTB domain 33, MDC protein having BTB domain 33			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28790.1.		Os10g0423700	LOC_Os10g28790.1				GO:0016021 - integral to membrane, GO:0005737 - cytoplasm		
21228	_	OsMB34, MB34	_	MATH-BTB protein 34, MDC protein with a BTB domain 34, MDC protein having BTB domain 34			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29750.1.		Os10g0434200	LOC_Os10g29750.1				GO:0009507 - chloroplast		
21229	_	OsMB35, MB35	_	MATH-BTB protein 35, MDC protein with a BTB domain 35, MDC protein having BTB domain 35			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29290.1.			LOC_Os10g29290				GO:0009507 - chloroplast		
21230	_	OsMB36, MB36	_	MATH-BTB protein 36, MDC protein with a BTB domain 36, MDC protein having BTB domain 36			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g30360.1.			LOC_Os10g30360				GO:0005634 - nucleus		
21231	_	OsMB37, MB37	_	MATH-BTB protein 37, MDC protein with a BTB domain 37, MDC protein having BTB domain 37			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29840.1.		Os10g0435300	LOC_Os10g29840.1				GO:0009507 - chloroplast		
21232	_	OsMB38, MB38	_	MATH-BTB protein 38, MDC protein with a BTB domain 38, MDC protein having BTB domain 38			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29740.1.		Os10g0434000	LOC_Os10g29740.1				GO:0009507 - chloroplast		
21233	_	OsMB39, MB39	_	MATH-BTB protein 39, MDC protein with a BTB domain 39, MDC protein having BTB domain 39			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29790.1.		Os10g0434650	LOC_Os10g29790.1				GO:0005737 - cytoplasm		
21234	_	OsMB40, MB40	_	MATH-BTB protein 40, MDC protein with a BTB domain 40, MDC protein having BTB domain 40			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28760.1.		Os10g0423300	LOC_Os10g28760.1				GO:0005737 - cytoplasm		
21235	_	OsMB41, MB41	_	MATH-BTB protein 41, MDC protein with a BTB domain 41, MDC protein having BTB domain 41			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28780.1.		Os10g0423400	LOC_Os10g28780.1, LOC_Os10g28770.1				GO:0005737 - cytoplasm		
21236	_	OsMB42, MB42	_	MATH-BTB protein 42, MDC protein with a BTB domain 42, MDC protein having BTB domain 42			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29410.1.		Os10g0429600	LOC_Os10g29410.1				GO:0005737 - cytoplasm		
21237	_	OsMB43, MB43	_	MATH-BTB protein 43, MDC protein with a BTB domain 43, MDC protein having BTB domain 43			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29950.1.		Os10g0436100	LOC_Os10g29950.1				GO:0005737 - cytoplasm		
21238	_	OsMB44, MB44	_	MATH-BTB protein 44, MDC protein with a BTB domain 44, MDC protein having BTB domain 44			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29850.1.		Os10g0435400	LOC_Os10g29850.1				GO:0009507 - chloroplast		
21239	_	OsMB45, MB45	_	MATH-BTB protein 45, MDC protein with a BTB domain 45, MDC protein having BTB domain 45			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29810.1.		Os10g0434999	LOC_Os10g29810.1				GO:0009507 - chloroplast		
21240	_	OsMB46, MB46	_	MATH-BTB protein 46, MDC protein with a BTB domain 46, MDC protein having BTB domain 46			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29495.1.	 Tolerance and resistance - Stress tolerance	Os10g0430600/Os10g0430700					GO:0009408 - response to heat, GO:0009507 - chloroplast	TO:0000259 - heat tolerance	
21241	_	OsMB47, MB47	_	MATH-BTB protein 47, MDC protein with a BTB domain 47, MDC protein having BTB domain 47			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29340.1.			LOC_Os10g29340				GO:0009507 - chloroplast		
21242	_	OsMB48, MB48	_	MATH-BTB protein 48, MDC protein with a BTB domain 48, MDC protein having BTB domain 48			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28770.1.		Os10g0423400	LOC_Os10g28780.1, LOC_Os10g28770.1				GO:0005737 - cytoplasm		
21243	_	OsMB49, MB49	_	MATH-BTB protein 49, MDC protein with a BTB domain 49, MDC protein having BTB domain 49			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29120.1.			LOC_Os10g29120				GO:0009507 - chloroplast		
21244	_	OsMB50, MB50	_	MATH-BTB protein 50, MDC protein with a BTB domain 50, MDC protein having BTB domain 50			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g41310.1.			LOC_Os11g41310				GO:0009507 - chloroplast		
21245	_	OsMB51, MB51	_	MATH-BTB protein 51, MDC protein with a BTB domain 51, MDC protein having BTB domain 51			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g41350.1.			LOC_Os11g41350				GO:0005737 - cytoplasm		
21246	_	OsMB52, MB52	_	MATH-BTB protein 52, MDC protein with a BTB domain 52, MDC protein having BTB domain 52			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g40680.1.		Os11g0622600	LOC_Os11g40680.1				GO:0005737 - cytoplasm		
21247	_	OsMB53, MB53	_	MATH-BTB protein 53, MDC protein with a BTB domain 53, MDC protein having BTB domain 53			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g40220.1.			LOC_Os11g40220				GO:0009507 - chloroplast		
21248	_	OsMB54, MB54	_	MATH-BTB protein 54, MDC protein with a BTB domain 54, MDC protein having BTB domain 54			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g45560.1.			LOC_Os11g45560				GO:0009507 - chloroplast		
21249	_	Os2M1, 2M1	_	two MATH domain containing MDC protein 1, MDC protein having two MATH domains 1			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os10g33830.1.		Os10g0478450/Os10g0478500					GO:0005773 - vacuole		
21250	_	Os2M2B1, 2M2B1	_	two MATH along with two BTB domains containing MDC protein 1, MDC protein having two MATH domains along with two BTB domains 1			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g41260.1.		Os11g0630700	LOC_Os11g41260.1				GO:0005737 - cytoplasm		
21251	RAE2 	OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2	REGULATOR OF AWN ELONGATION 2 	"EPIDERMAL PATTERNING FACTOR-LIKE 1, Regulator of Awn Elongation 2, \"GRAIN NUMBER, GRAIN LENGTH AND AWN DEVELOPMENT1\", Grain Length and Awn Development"		rae2, gad1, GLA-VGL, GLA-VA	8	a member of epidermal patterning factor-like protein (EPFL). KX827806 (Oryza rufipogon), KX827807 (Oryza sativa).	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0485500 	LOC_Os08g37890.1				GO:0010052 - guard cell differentiation	TO:0000072 - awn length, TO:0002734 - awn presence, TO:0002759 - grain number, TO:0000734 - grain length, TO:0000162 - seed quality, TO:0000266 - chalky endosperm, TO:0002656 - starch grain shape	
21252	RAE3		REGULATOR OF AWN ELONGATION  3	Regulator of Awn Elongation 3				RAE3 is a novel locus controlling long awn formation that is responsible for the loss of long awns in O. glaberrima, and this locus is independent of the RAE1/An-1 and RAE2 loci controlling awn formation in O. sativa. (Furuta et al. 2015)	 Reproductive organ - Spikelet, flower, glume, awn							TO:0002734 - awn presence, TO:0000072 - awn length	
21253	FTSH2	OsFtsH2, FtsH2	_				6	Q655S1.	 Biochemical character,  Vegetative organ - Leaf	Os06g0669400	LOC_Os06g45820.4, LOC_Os06g45820.3, LOC_Os06g45820.2, LOC_Os06g45820.1				GO:0010150 - leaf senescence, GO:0010027 - thylakoid membrane organization, GO:0009941 - chloroplast envelope, GO:0009737 - response to abscisic acid stimulus, GO:0009535 - chloroplast thylakoid membrane, GO:0008237 - metallopeptidase activity, GO:0006508 - proteolysis, GO:0005524 - ATP binding, GO:0010205 - photoinhibition, GO:0004176 - ATP-dependent peptidase activity, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0004222 - metalloendopeptidase activity, GO:0010206 - photosystem II repair, GO:0010304 - PSII associated light-harvesting complex II catabolic process	TO:0000249 - leaf senescence, TO:0000615 - abscisic acid sensitivity	PO:0001054 - 4 leaf senescence stage 
21254	_	PSF	_	premature senescence of flag leaves		pff			 Vegetative organ - Leaf						GO:0009738 - abscisic acid mediated signaling, GO:0009416 - response to light stimulus, GO:0010150 - leaf senescence, GO:0010206 - photosystem II repair	TO:0000496 - carotenoid content, TO:0000075 - light sensitivity, TO:0000298 - chlorophyll ratio, TO:0000249 - leaf senescence, TO:0000293 - chlorophyll-a content, TO:0002667 - abscisic acid content, TO:0000295 - chlorophyll-b content	PO:0001054 - 4 leaf senescence stage 
21255	FTSH1	OsFtsH1, FtsH1	_				6	Q5Z974.	 Biochemical character	Os06g0725900	LOC_Os06g51029.2, LOC_Os06g51029.1				GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0010206 - photosystem II repair, GO:0010205 - photoinhibition, GO:0009579 - thylakoid, GO:0009507 - chloroplast, GO:0008237 - metallopeptidase activity, GO:0006508 - proteolysis, GO:0005524 - ATP binding, GO:0004222 - metalloendopeptidase activity, GO:0004176 - ATP-dependent peptidase activity		
21256	FTSH3	OsFtsH3, FtsH3	_				1	Q8S2A7.	 Biochemical character	Os01g0842600	LOC_Os01g62500.1				GO:0008237 - metallopeptidase activity, GO:0008053 - mitochondrial fusion, GO:0006461 - protein complex assembly, GO:0005743 - mitochondrial inner membrane, GO:0005524 - ATP binding, GO:0004222 - metalloendopeptidase activity, GO:0004176 - ATP-dependent peptidase activity, GO:0008270 - zinc ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0034982 - mitochondrial protein processing, GO:0042407 - cristae formation, GO:0045041 - protein import into mitochondrial intermembrane space		
21257	FTSH4	OsFtsH4, FtsH4	_				1	Q8LQJ9.	 Biochemical character	Os01g0574400	LOC_Os01g39250.1				GO:0004176 - ATP-dependent peptidase activity, GO:0004222 - metalloendopeptidase activity, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0046872 - metal ion binding, GO:0016020 - membrane, GO:0008237 - metallopeptidase activity, GO:0006508 - proteolysis		
21258	FTSH5	OsFtsH5, FtsH5	_				1	Q8LQJ8.	 Biochemical character	Os01g0574500	LOC_Os01g39260.1				GO:0016020 - membrane, GO:0008237 - metallopeptidase activity, GO:0046872 - metal ion binding, GO:0004176 - ATP-dependent peptidase activity, GO:0006508 - proteolysis, GO:0004222 - metalloendopeptidase activity, GO:0005739 - mitochondrion, GO:0005524 - ATP binding		
21259	FTSH7	OsFtsH7, FtsH7	_				2	Q6H6R9.	 Biochemical character	Os02g0649700	LOC_Os02g43350.1				GO:0008270 - zinc ion binding, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0004222 - metalloendopeptidase activity, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0006508 - proteolysis, GO:0016021 - integral to membrane, GO:0004176 - ATP-dependent peptidase activity, GO:0008237 - metallopeptidase activity		
21260	FTSH8	OsFtsH8, FtsH8	_				5	Q0DHL4.	 Biochemical character	Os05g0458400	LOC_Os05g38400.3, LOC_Os05g38400.2, LOC_Os05g38400.1				GO:0009535 - chloroplast thylakoid membrane, GO:0034982 - mitochondrial protein processing, GO:0004222 - metalloendopeptidase activity, GO:0004176 - ATP-dependent peptidase activity, GO:0042407 - cristae formation, GO:0045041 - protein import into mitochondrial intermembrane space, GO:0005524 - ATP binding, GO:0005743 - mitochondrial inner membrane, GO:0006461 - protein complex assembly, GO:0008053 - mitochondrial fusion, GO:0008237 - metallopeptidase activity, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane		
21261	FTSH9	OsFtsH9, FtsH9	_				1	A2ZVG7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0618800	LOC_Os01g43150.3, LOC_Os01g43150.2, LOC_Os01g43150.1				GO:0005739 - mitochondrion, GO:0009941 - chloroplast envelope, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0006508 - proteolysis, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0004176 - ATP-dependent peptidase activity, GO:0009535 - chloroplast thylakoid membrane, GO:0008237 - metallopeptidase activity, GO:0005524 - ATP binding, GO:0004222 - metalloendopeptidase activity, GO:0009409 - response to cold, GO:0031966 - mitochondrial membrane	TO:0000303 - cold tolerance	
21262	_	Ung	_	Uracil-N-Glycosylase			4		 Biochemical character	Os04g0673400	LOC_Os04g57730.1				GO:0004844 - uracil DNA N-glycosylase activity, GO:0006284 - base-excision repair, GO:0005739 - mitochondrion, GO:0005634 - nucleus		
21263	_	Ogg	_	8-oxoguanine DNA glycosylase			2		 Biochemical character	Os02g0552600	LOC_Os02g34750.2, LOC_Os02g34750.1				GO:0005634 - nucleus, GO:0006284 - base-excision repair, GO:0019104 - DNA N-glycosylase activity, GO:0003684 - damaged DNA binding, GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity, GO:0006289 - nucleotide-excision repair		
21264	_	XPC	_				8	GO:0071942: XPC complex.	 Biochemical character	Os08g0427500	LOC_Os08g33082.1				GO:0003684 - damaged DNA binding, GO:0005737 - cytoplasm, GO:0006289 - nucleotide-excision repair, GO:0006298 - mismatch repair, GO:0000111 - nucleotide-excision repair factor 2 complex, GO:0003697 - single-stranded DNA binding		
21265	_	XPF (Rad1), XPF, Rad1	_				3	GO:1901255: nucleotide-excision repair involved in interstrand cross-link repair.	 Biochemical character	Os03g0100400	LOC_Os03g01100.1				GO:0003684 - damaged DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0000110 - nucleotide-excision repair factor 1 complex, GO:0000014 - single-stranded DNA specific endodeoxyribonuclease activity, GO:0006296 - nucleotide-excision repair, DNA incision, 5'-to lesion, GO:0003697 - single-stranded DNA binding		
21266	_	ERCC1 (Rad10), ERCC1, Rad10	_				10		 Biochemical character	Os10g0518900	LOC_Os10g37490.1				GO:0006289 - nucleotide-excision repair, GO:0003684 - damaged DNA binding, GO:0004519 - endonuclease activity, GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0006296 - nucleotide-excision repair, DNA incision, 5'-to lesion		
21267	_	Rad23	_				2		 Biochemical character	Os02g0179300	LOC_Os02g08300.2, LOC_Os02g08300.1				GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0003684 - damaged DNA binding, GO:0006289 - nucleotide-excision repair		
21268	_	Rad23	_				6		 Biochemical character	Os06g0264300	LOC_Os06g15360.4, LOC_Os06g15360.3, LOC_Os06g15360.2, LOC_Os06g15360.1				GO:0006289 - nucleotide-excision repair, GO:0003684 - damaged DNA binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus		
21269	_	CSB	_				5		 Biochemical character	Os05g0247900	LOC_Os05g15890.3, LOC_Os05g15890.2, LOC_Os05g15890.1				GO:0005524 - ATP binding, GO:0006283 - transcription-coupled nucleotide-excision repair, GO:0005634 - nucleus, GO:0006289 - nucleotide-excision repair		
21270	_	CSB	_				1	LOC_Os01g44990. an ERCC6 protein targeted by osa-miR444 (Qin et al. 2017).	 Biochemical character	Os01g0636700	LOC_Os01g44990.1				GO:0003676 - nucleic acid binding, GO:0006283 - transcription-coupled nucleotide-excision repair, GO:0006289 - nucleotide-excision repair, GO:0005524 - ATP binding, GO:0004386 - helicase activity		
21271	_	XAB2	_				7	GO:0000974: Prp19 complex.	 Biochemical character	Os07g0644300	LOC_Os07g44970.1				GO:0071014 - post-mRNA release spliceosomal complex, GO:0071010 - prespliceosome, GO:0006289 - nucleotide-excision repair, GO:0000349 - generation of catalytic spliceosome for first transesterification step, GO:0071012 - catalytic step 1 spliceosome, GO:0006283 - transcription-coupled nucleotide-excision repair, GO:0071013 - catalytic step 2 spliceosome		
21272	_	MMS19	_				7		 Biochemical character	Os07g0177100	LOC_Os07g08050.1				GO:0006283 - transcription-coupled nucleotide-excision repair, GO:0006289 - nucleotide-excision repair		
21273	_	TagI	_				3		 Biochemical character	Os03g0198900	LOC_Os03g10224.1, LOC_Os03g10220.1				GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, GO:0003676 - nucleic acid binding, GO:0008168 - methyltransferase activity, GO:0006284 - base-excision repair, GO:0016798 - hydrolase activity, acting on glycosyl bonds		
21274	_	TagI	_				2		 Biochemical character	Os02g0774500	LOC_Os02g53430.1				GO:0006284 - base-excision repair, GO:0003677 - DNA binding, GO:0003905 - alkylbase DNA N-glycosylase activity		
21275	_	TagI	_				8		 Biochemical character	Os08g0489300	LOC_Os08g38170.5, LOC_Os08g38170.4, LOC_Os08g38170.3, LOC_Os08g38170.1				GO:0008725 - DNA-3-methyladenine glycosylase I activity, GO:0016021 - integral to membrane, GO:0006284 - base-excision repair		
21276	_	TagI	_				4		 Biochemical character	Os04g0501200	LOC_Os04g42290.1				GO:0006284 - base-excision repair, GO:0008725 - DNA-3-methyladenine glycosylase I activity		
21277	_	TagI	_				1		 Biochemical character	Os01g0799500	LOC_Os01g58550.2, LOC_Os01g58550.1				GO:0008725 - DNA-3-methyladenine glycosylase I activity, GO:0006284 - base-excision repair		
21278	_	MutM	_				6		 Biochemical character	Os06g0643600	LOC_Os06g43610.1				GO:0008270 - zinc ion binding, GO:0006284 - base-excision repair, GO:0003684 - damaged DNA binding, GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity, GO:0006289 - nucleotide-excision repair		
21279	_	AlkA	_				5		 Biochemical character	Os05g0567500	LOC_Os05g49250.2, LOC_Os05g49250.1				GO:0006284 - base-excision repair, GO:0019104 - DNA N-glycosylase activity, GO:0005634 - nucleus		
21280	_		_	AP endonuclease			1		 Biochemical character	Os01g0801000	LOC_Os01g58680.1				GO:0006284 - base-excision repair, GO:0005634 - nucleus, GO:0008311 - double-stranded DNA specific 3'-5' exodeoxyribonuclease activity, GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity		
21281	_		_	AP endonuclease			1		 Biochemical character	Os01g0801100	LOC_Os01g58690.3, LOC_Os01g58690.2, LOC_Os01g58690.1				GO:0003677 - DNA binding, GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity, GO:0005634 - nucleus, GO:0006284 - base-excision repair, GO:0008311 - double-stranded DNA specific 3'-5' exodeoxyribonuclease activity, GO:0046872 - metal ion binding		
21282	_		_	AP endonuclease 2			9		 Biochemical character	Os09g0536000	LOC_Os09g36530.2, LOC_Os09g36530.1				GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0008311 - double-stranded DNA specific 3'-5' exodeoxyribonuclease activity, GO:0006284 - base-excision repair, GO:0005634 - nucleus		
21283	_		_	MutS homologue			4		 Biochemical character	Os04g0507000	LOC_Os04g42784.1				GO:0003684 - damaged DNA binding, GO:0005524 - ATP binding, GO:0030983 - mismatched DNA binding, GO:0000710 - meiotic mismatch repair, GO:0007131 - reciprocal meiotic recombination, GO:0032300 - mismatch repair complex, GO:0000228 - nuclear chromosome		
21284	_		_	MutS homologue			10		 Biochemical character	Os10g0509000	LOC_Os10g36530.2, LOC_Os10g36530.1				GO:0006298 - mismatch repair, GO:0030983 - mismatched DNA binding, GO:0005524 - ATP binding		
21285	_	RecA	_				1	similar to E. coli RecA.	 Biochemical character	Os01g0901200	LOC_Os01g67510.1				GO:0010212 - response to ionizing radiation, GO:0008094 - DNA-dependent ATPase activity, GO:0003690 - double-stranded DNA binding, GO:0000730 - DNA recombinase assembly, GO:0003697 - single-stranded DNA binding, GO:0000150 - recombinase activity, GO:0000400 - four-way junction DNA binding, GO:0005524 - ATP binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0042148 - strand invasion, GO:0006312 - mitotic recombination		
21286	_	RecA	_				3	similar to E. coli RecA.	 Biochemical character	Os03g0639700	LOC_Os03g43850.1				GO:0000150 - recombinase activity, GO:0003697 - single-stranded DNA binding, GO:0003690 - double-stranded DNA binding, GO:0005524 - ATP binding, GO:0042148 - strand invasion, GO:0000730 - DNA recombinase assembly, GO:0000724 - double-strand break repair via homologous recombination, GO:0000400 - four-way junction DNA binding, GO:0006312 - mitotic recombination, GO:0008094 - DNA-dependent ATPase activity, GO:0010212 - response to ionizing radiation		
21287	_	NBS1	_	Nijmegen breakage syndrome 1			10	Q7XD82. GO:0071479: cellular response to ionizing radiation.	 Biochemical character	Os10g0487300	LOC_Os10g34580.2, LOC_Os10g34580.1				GO:0030870 - Mre11 complex, GO:0007131 - reciprocal meiotic recombination, GO:0042770 - DNA damage response, signal transduction, GO:0016233 - telomere capping, GO:0000784 - nuclear chromosome, telomeric region, GO:0032508 - DNA duplex unwinding, GO:0007095 - mitotic cell cycle G2/M transition DNA damage checkpoint, GO:0003684 - damaged DNA binding, GO:0006312 - mitotic recombination, GO:0006974 - response to DNA damage stimulus, GO:0000724 - double-strand break repair via homologous recombination, GO:0016605 - PML body		
21288	_	XPV	_	DNA polymerase eta			1		 Biochemical character	Os01g0757800	LOC_Os01g55300.5, LOC_Os01g55300.4, LOC_Os01g55300.3, LOC_Os01g55300.2, LOC_Os01g55300.1				GO:0019985 - bypass DNA synthesis, GO:0006281 - DNA repair, GO:0034061 - DNA polymerase activity, GO:0003684 - damaged DNA binding		
21289	_		_	DNA polymerase kappa			3		 Biochemical character	Os03g0616300	LOC_Os03g42010.2, LOC_Os03g42010.1				GO:0003887 - DNA-directed DNA polymerase activity, GO:0006281 - DNA repair, GO:0003684 - damaged DNA binding, GO:0019985 - bypass DNA synthesis		
21290	NTP10	OsNTP10	NUCLEOTIDYL TRANSFERASE PROTEIN 10	DNA polymerase sigma, nucleotidyl transferase protein 10	NUCLEOTIDYL TRANSFERASE PROTEIN 10		10	LOC_Os10g11034.1	 Biochemical character	Os10g0188300	LOC_Os10g11034.1				GO:0034061 - DNA polymerase activity, GO:0007062 - sister chromatid cohesion, GO:0016779 - nucleotidyltransferase activity		
21291	_		_	Pol I-like			4	family A DNA polymerase.	 Biochemical character	Os04g0637400	LOC_Os04g54500.1				GO:0006261 - DNA-dependent DNA replication, GO:0005737 - cytoplasm, GO:0003887 - DNA-directed DNA polymerase activity, GO:0008409 - 5'-3' exonuclease activity, GO:0003677 - DNA binding		
21292	_	Rev1	_				6	deoxyribonucleotidyl transferase.	 Biochemical character	Os06g0691000	LOC_Os06g47580.3, LOC_Os06g47580.2, LOC_Os06g47580.1				GO:0042276 - error-prone postreplication DNA repair, GO:0005634 - nucleus, GO:0034061 - DNA polymerase activity, GO:0003684 - damaged DNA binding, GO:0016779 - nucleotidyltransferase activity		
21293	_	RFC1, OsRFC1	_	replication factor C subunit 1, replication factor C1			11	accessory protein of DNA polymerases. Q2R2B4.	 Biochemical character	Os11g0572100	LOC_Os11g36390.1				GO:0003677 - DNA binding, GO:0005663 - DNA replication factor C complex, GO:0006260 - DNA replication, GO:0006281 - DNA repair, GO:0003689 - DNA clamp loader activity, GO:0005524 - ATP binding, GO:0005634 - nucleus		
21294	_	RFC2, OsRFC2	_	replication factor C subunit 2, replication factor C2			12	accessory protein of DNA polymerases. Q9FXM3.	 Biochemical character	Os12g0176500	LOC_Os12g07720.1				GO:0003677 - DNA binding, GO:0006261 - DNA-dependent DNA replication, GO:0005737 - cytoplasm, GO:0005663 - DNA replication factor C complex, GO:0005634 - nucleus, GO:0005524 - ATP binding		
21295	_	RFC4, OsRFC4	_	replication factor C subunit 4, replication factor C4			4	accessory protein of DNA polymerases. Q7XRX1.	 Biochemical character	Os04g0569000	LOC_Os04g48060.1				GO:0005524 - ATP binding, GO:0006261 - DNA-dependent DNA replication, GO:0005663 - DNA replication factor C complex, GO:0005634 - nucleus, GO:0003677 - DNA binding		
21296	_	RFC5, OsRFC5	_	replication factor C subunit 5, replication factor C5			3	accessory protein of DNA polymerases. Q852K3.	 Biochemical character	Os03g0792600	LOC_Os03g57870.1				GO:0003677 - DNA binding, GO:0006261 - DNA-dependent DNA replication, GO:0005663 - DNA replication factor C complex, GO:0005634 - nucleus, GO:0005524 - ATP binding		
21297	_	MMS2, OsUEV1C, UEV1C	_	Ubc-E2 variant 1C			9	Rad8 pathway. GO:0061630: ubiquitin protein ligase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0297100	LOC_Os09g12570.1				GO:0005634 - nucleus, GO:0070534 - protein K63-linked ubiquitination, GO:0006974 - response to DNA damage stimulus, GO:0031625 - ubiquitin protein ligase binding, GO:0006301 - postreplication repair, GO:0005737 - cytoplasm, GO:0004842 - ubiquitin-protein ligase activity		
21298	_		_	RecQ homologue, RecQ-like helices, RecQ helicase			7	GO:0071480: cellular response to gamma radiation.	 Biochemical character	Os07g0681600	LOC_Os07g48360.1				GO:0007569 - cell aging, GO:0009378 - four-way junction helicase activity, GO:0000784 - nuclear chromosome, telomeric region, GO:0031297 - replication fork processing, GO:0000731 - DNA synthesis during DNA repair, GO:0000722 - telomere maintenance via recombination, GO:0032508 - DNA duplex unwinding, GO:0043140 - ATP-dependent 3'-5' DNA helicase activity, GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0005654 - nucleoplasm, GO:0005737 - cytoplasm, GO:0006284 - base-excision repair, GO:0006302 - double-strand break repair		
21299	_		_	RecQ homologue, RecQ-like helices, RecQ helicase			5		 Biochemical character	Os05g0150600	LOC_Os05g05810.2, LOC_Os05g05810.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0000724 - double-strand break repair via homologous recombination, GO:0043140 - ATP-dependent 3'-5' DNA helicase activity, GO:0009378 - four-way junction helicase activity, GO:0005737 - cytoplasm, GO:0005524 - ATP binding		
21300	_		_	WRN-like exonuclease, RecQ helices, 3'-5' exonuclease domain-containing protein			1	up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character	Os01g0300000	LOC_Os01g19430.1				GO:0005634 - nucleus, GO:0009790 - embryonic development, GO:0005737 - cytoplasm, GO:0008408 - 3'-5' exonuclease activity, GO:0003676 - nucleic acid binding		
21301	TOP1	OsTOP1	TOPOISOMERASE 1	topoisomerase I, type I topoisomerase, topoisomerase 1	TOPOISOMERASE 1		8		 Biochemical character,  Vegetative organ - Root	Os08g0154600	LOC_Os08g05840.1				GO:0006338 - chromatin remodeling, GO:0031298 - replication fork protection complex, GO:0048364 - root development, GO:0009630 - gravitropism, GO:0080022 - primary root development, GO:0048527 - lateral root development, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003917 - DNA topoisomerase type I activity, GO:0003918 - DNA topoisomerase (ATP-hydrolyzing) activity, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0007059 - chromosome segregation, GO:0006260 - DNA replication, GO:0006265 - DNA topological change	TO:0001012 - lateral root length, TO:0000656 - root development trait, TO:0001013 - lateral root number	PO:0007520 - root development stage , PO:0009005 - root 
21302	TOP2	OsTOP2	TOPOISOMERASE 2	topoisomerase II, type II topoisomerase, topoisomerase 2	TOPOISOMERASE 2		2	GO:0044774: mitotic DNA integrity checkpoint.	 Biochemical character	Os02g0699700	LOC_Os02g47150.1				GO:0005524 - ATP binding, GO:0000819 - sister chromatid segregation, GO:0003677 - DNA binding, GO:0006268 - DNA unwinding during replication, GO:0006312 - mitotic recombination, GO:0009330 - DNA topoisomerase complex (ATP-hydrolyzing), GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0003918 - DNA topoisomerase (ATP-hydrolyzing) activity, GO:0005634 - nucleus, GO:0006265 - DNA topological change		
21303	_	XRCC4	_				3		 Biochemical character	Os03g0740800	LOC_Os03g53000.1				GO:0006310 - DNA recombination, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0032807 - DNA ligase IV complex, GO:0006302 - double-strand break repair		
21304	_		_	DNA ligase			1		 Biochemical character	Os01g0685500	LOC_Os01g49180.1				GO:0003910 - DNA ligase (ATP) activity, GO:0006273 - lagging strand elongation, GO:0051103 - DNA ligation during DNA repair, GO:0005524 - ATP binding, GO:0006310 - DNA recombination		
21305	_	OsRAD1, RAD1	_	Rad1 (S. pombe) homologue, Radiation sensitive 1		Osrad1, Osrad1-1, Osrad1-2	6	PCNA-like damage sensor. LOC_Os06g04190. endonuclease homolog. 9-1-1 complex member. GO:2000781: positive regulation of double-strand break repair. GO:2001033: negative regulation of double-strand break repair via nonhomologous end joining. GO:2000003: positive regulation of DNA damage checkpoint. GO:1990918: double-strand break repair involved in meiotic recombination.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os06g0132600	LOC_Os06g04190.2, LOC_Os06g04190.1				GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0003684 - damaged DNA binding, GO:0006302 - double-strand break repair, GO:0000077 - DNA damage checkpoint, GO:0030896 - checkpoint clamp complex, GO:0006281 - DNA repair		
21306	_	PARP1	_	poly(ADP-ribose) polymerase 1			7	Q7EYV7.	 Biochemical character	Os07g0413700	LOC_Os07g23110.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006284 - base-excision repair, GO:0051287 - NAD or NADH binding, GO:0003910 - DNA ligase (ATP) activity, GO:0003950 - NAD+ ADP-ribosyltransferase activity, GO:0008270 - zinc ion binding, GO:0051103 - DNA ligation during DNA repair, GO:0006273 - lagging strand elongation, GO:0006471 - protein amino acid ADP-ribosylation, GO:0005737 - cytoplasm		
21307	_	RecA	_				11	similar to E. coli RecA.	 Biochemical character	Os11g0302700	LOC_Os11g19720.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0005524 - ATP binding, GO:0008094 - DNA-dependent ATPase activity, GO:0003690 - double-stranded DNA binding, GO:0000400 - four-way junction DNA binding, GO:0000150 - recombinase activity, GO:0003697 - single-stranded DNA binding, GO:0000730 - DNA recombinase assembly, GO:0006312 - mitotic recombination, GO:0010212 - response to ionizing radiation, GO:0042148 - strand invasion		
21308	_	RecG	_				2	similar to E. coli RecG.	 Biochemical character	Os02g0710800	LOC_Os02g48100.1				GO:0003676 - nucleic acid binding, GO:0004004 - ATP-dependent RNA helicase activity, GO:0000724 - double-strand break repair via homologous recombination, GO:0010501 - RNA secondary structure unwinding, GO:0005524 - ATP binding		
21309	_		_	Rad54-like			5		 Biochemical character	Os05g0392400	LOC_Os05g32610.1				GO:0005524 - ATP binding, GO:0000724 - double-strand break repair via homologous recombination		
21310	_	TOP3, TOP3alpha	_	topoisomerase 3, Topoisomerase 3alpha			3	C7J0A2	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0165000	LOC_Os03g06900.1				GO:0008270 - zinc ion binding, GO:0005694 - chromosome, GO:0003917 - DNA topoisomerase type I activity, GO:0003677 - DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0006265 - DNA topological change, GO:0010520 - regulation of reciprocal meiotic recombination		
21311	_	TOP3	_	topoisomerase 3			9	Q0J0S6.	 Biochemical character	Os09g0500600	LOC_Os09g32450.1				GO:0006265 - DNA topological change, GO:0003677 - DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0003917 - DNA topoisomerase type I activity, GO:0046872 - metal ion binding		
21312	_	SSB	_				5		 Biochemical character	Os05g0509700	LOC_Os05g43440.2, LOC_Os05g43440.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0003697 - single-stranded DNA binding, GO:0006260 - DNA replication		
21313	_	SSB	_				1		 Biochemical character	Os01g0642900	LOC_Os01g45530.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0003697 - single-stranded DNA binding, GO:0006260 - DNA replication		
21314	_	EME1	_				4	Q0J9J6.	 Biochemical character	Os04g0648700	LOC_Os04g55500.1				GO:0005634 - nucleus, GO:0000724 - double-strand break repair via homologous recombination, GO:0003677 - DNA binding, GO:0004519 - endonuclease activity, GO:0046872 - metal ion binding, GO:0051301 - cell division, GO:0006310 - DNA recombination, GO:0006281 - DNA repair, GO:0051321 - meiotic cell cycle, GO:0007067 - mitosis, GO:0010332 - response to gamma radiation, GO:0009644 - response to high light intensity, GO:0009411 - response to UV		
21315	_	MND1	_				9		 Biochemical character	Os09g0280600	LOC_Os09g10850.1				GO:0000724 - double-strand break repair via homologous recombination		
21316	_	BARD1	_				5		 Biochemical character	Os05g0486600	LOC_Os05g40810.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0006281 - DNA repair		
21317	_	PARP2A	_	poly(ADP-ribose) polymerase 2A			1	Q5Z8Q9.	 Biochemical character	Os01g0351200	LOC_Os01g24940.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0003677 - DNA binding, GO:0006471 - protein amino acid ADP-ribosylation, GO:0006273 - lagging strand elongation, GO:0051103 - DNA ligation during DNA repair, GO:0003910 - DNA ligase (ATP) activity, GO:0003950 - NAD+ ADP-ribosyltransferase activity		
21318	_	PARP2B	_	poly(ADP-ribose) polymerase 2B			1	Q0JMY1.	 Biochemical character	Os01g0351100	LOC_Os01g24920.1				GO:0003950 - NAD+ ADP-ribosyltransferase activity, GO:0005737 - cytoplasm, GO:0006273 - lagging strand elongation, GO:0006471 - protein amino acid ADP-ribosylation, GO:0051103 - DNA ligation during DNA repair, GO:0003910 - DNA ligase (ATP) activity, GO:0005634 - nucleus		
21319	WSL3	OspTAC3, pTAC3, OsPAP1, PAP1	WHITE STRIPE LEAF 3	white stripe leaf 3, plastid transcriptionally active chromosome protein 3, plastid TAC protein 3, PEP-associated protein 1, plastid-encoded plastid polymerase-associated protein 1		wsl3	10	LOC_Os10g32540. a componant of the plastid-encoded plastid RNA polymerase. an essential peripheral subunit of PEP complex, OsPAP1/OspTAC3. a SAP (SAF-A/B, Acinus and PIAS) domain protein. TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll	Os10g0462800	LOC_Os10g32540.1				GO:0009507 - chloroplast	TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content	
21321	WSL2		WHITE STRIPE LEAF 2	white stripe leaf 2		wsl2		(Jia Lyu unpublished)	 Coloration - Chlorophyll							TO:0000326 - leaf color	
21322	MYB1R1 	OsMYB1R1, 1R-MYB1	MYB-RELATED TRANSCRIPTION FACTOR 1	MYB-related transcription factor 1, MYB-related 1, single MYB-like domain protein 1	MYB-RELATED TRANSCRIPTION FACTOR 1		1	GO:0080186: developmental vegetative growth.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Other	Os01g0192300	LOC_Os01g09640.1				GO:0003700 - transcription factor activity, GO:0007623 - circadian rhythm, GO:2000028 - regulation of photoperiodism, flowering, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0035066 - positive regulation of histone acetylation, GO:0016573 - histone acetylation, GO:0003682 - chromatin binding, GO:0003713 - transcription coactivator activity, GO:0008270 - zinc ion binding, GO:0006338 - chromatin remodeling	TO:0002616 - flowering time, TO:0000461 - basic vegetative phase, TO:0000396 - grain yield, TO:0006021 - vegetative to reproductive phase transition trait	
21323	TCD5	OsTCD5, TSV, OsTSV, CSV1, OsCSV1	THERMO-SENSITIVE CHLOROPLAST DEVELOPMENT 5	thermo-sensitive chloroplast development 5, temperature-sensitive virescent, cold sensitive virescent1		tcd5, tsv, csv1	5	LOC_Os05g34040. GO:0071949: FAD binding. a plastid-targeted monooxygenase family protein. Arabidopsis TCD5 orthologue: At4G30720. TO:0006060: leaf chlorosis.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os05g0411200	LOC_Os05g34040.1, LOC_Os05g34040.2				GO:0009536 - plastid, GO:0007623 - circadian rhythm, GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process, GO:0048366 - leaf development, GO:0016491 - oxidoreductase activity, GO:0010027 - thylakoid membrane organization, GO:0009658 - chloroplast organization, GO:0009409 - response to cold	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000069 - variegated leaf, TO:0000207 - plant height, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000655 - leaf development trait, TO:0000303 - cold tolerance	PO:0001050 - leaf development stage , PO:0005426 - chlorenchyma , PO:0025034 - leaf 
21324	_	OsFLU1, FLU1	_	fluorescent 1			1	LOC_Os01g32730. a negative regulator fluorescent (FLU).	 Coloration - Chlorophyll	Os01g0510600	LOC_Os01g32730.2, LOC_Os01g32730.1				GO:0015995 - chlorophyll biosynthetic process		
21325	LCAA	OsLCAA	LOW CHLOROPHYLL ACCUMULATION A	low chlorophyll accumulation A			3	a rice chloroplast protein.	 Coloration - Chlorophyll	Os03g0331600	LOC_Os03g21370.1				GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process		
21326	_	OsRAD9, RAD9	_	Radiation sensitive 9				LOC_Os04g44620. a member of the RAD9-RAD1-HUS1 (9-1-1) complex. GO:2000781: positive regulation of double-strand break repair. GO:2000003: positive regulation of DNA damage checkpoint.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis						GO:0006302 - double-strand break repair, GO:0000077 - DNA damage checkpoint		
21327	DPE1	OsDPE1, OsDpe1, Dpe1	DISPROPORTIONATING ENZYME 1	disproportionating enzyme 1	DISPROPORTIONATING ENZYME 1		7	Q8LI30. 	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os07g0627000	LOC_Os07g43390.1				GO:0009507 - chloroplast, GO:0019252 - starch biosynthetic process, GO:0004134 - 4-alpha-glucanotransferase activity, GO:0009501 - amyloplast, GO:0009312 - oligosaccharide biosynthetic process	TO:0002658 - starch grain synthesis	PO:0009089 - endosperm 
21328	DPE2	OsDPE2, OsDpe2, Dpe2	DISPROPORTIONATING ENZYME 2	disproportionating enzyme 2	DISPROPORTIONATING ENZYME 2		7	Q69Q02. GO:2001070: starch binding.	 Biochemical character	Os07g0662900	LOC_Os07g46790.1				GO:0005829 - cytosol, GO:0004134 - 4-alpha-glucanotransferase activity		
21329	TSD2 	OsTSD2, OsQUA2, QUA2	TUMOROUS SHOOT DEVELOPMENT 2	TUMOROUS SHOOT DEVELOPMENT2, QUASIMODO2, QUASIMODO 2		tsd2, Ostsd2, Ostsd2a, Ostsd2b, Ostsd2c, Osqua2, Osqua2-1, Osqua2-2, Osqua2-3, tsd2-1, tsd2-2, sstm1	2	LOC_Os02g51860. the rice ortholog of AtQUA2. a pectin methyltransferase. GO:1903648: positive regulation of chlorophyll catabolic process.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0755000	LOC_Os02g51860.1				GO:0008168 - methyltransferase activity, GO:0050801 - ion homeostasis, GO:0009827 - plant-type cell wall modification, GO:0009635 - response to herbicide, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0015996 - chlorophyll catabolic process, GO:0005768 - endosome, GO:0005774 - vacuolar membrane, GO:0005802 - trans-Golgi network, GO:0007155 - cell adhesion, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0010618 - aerenchyma formation, GO:0016021 - integral to membrane, GO:0010394 - homogalacturonan metabolic process, GO:0005794 - Golgi apparatus, GO:0032259 - methylation, GO:0045488 - pectin metabolic process, GO:0045489 - pectin biosynthetic process, GO:0048364 - root development, GO:0010150 - leaf senescence	TO:0020003 - shoot potassium content, TO:0020004 - shoot sodium content, TO:0000058 - herbicide sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000207 - plant height, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0001013 - lateral root number, TO:0000396 - grain yield, TO:0000328 - sucrose content, TO:0002668 - jasmonic acid content, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content	PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage , PO:0005020 - vascular bundle , PO:0009047 - stem 
21330	_	MODD	_	Mediator of OsbZIP46 deactivation and degradation		modd-1, modd-2	3	homologous to the Arabidopsis thaliana ABSCISIC ACID-INSENSITIVE5 (ABI5)-binding protein AFP. an OsbZIP46-interacting protein. LOC_Os03g11550. Q10Q07. GO:0080148: negative regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance	Os03g0214200	LOC_Os03g11550.2, LOC_Os03g11550.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0007165 - signal transduction, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
21331	FAH1	Os-FAH1, OsFAH1	FATTY ACID 2-HYDROXYLASE 1	fatty acid 2-hydroxylase 1	FATTY ACID 2-HYDROXYLASE 1		12		 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0628400 	LOC_Os12g43363.3, LOC_Os12g43363.2, LOC_Os12g43363.1				GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0005783 - endoplasmic reticulum, GO:0006633 - fatty acid biosynthetic process, GO:0006665 - sphingolipid metabolic process, GO:0080132 - fatty acid alpha-hydroxylase activity, GO:0006631 - fatty acid metabolic process	TO:0000074 - blast disease	
21332	FAH2	Os-FAH2, OsFAH2	FATTY ACID 2-HYDROXYLASE 2	fatty acid 2-hydroxylase 2	FATTY ACID 2-HYDROXYLASE 2		3		 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0780800  	LOC_Os03g56820.3, LOC_Os03g56820.2, LOC_Os03g56820.1				GO:0005783 - endoplasmic reticulum, GO:0080132 - fatty acid alpha-hydroxylase activity, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0006665 - sphingolipid metabolic process, GO:0006633 - fatty acid biosynthetic process, GO:0006631 - fatty acid metabolic process, GO:0005506 - iron ion binding	TO:0000074 - blast disease	
21333	_	Os2OG-Fe (II) oxy, 2OG-Fe (II) oxy	_	2OG-Fe (II) oxygenase domain containing protein, 2OG-Fe (II) oxygenase family protein			1	LOC_Os01g61440.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0830500	LOC_Os01g61440.1				GO:0006950 - response to stress, GO:0051213 - dioxygenase activity	TO:0000164 - stress trait	
21334	_	OsSDR110C-MI3, SDR110C-MI3	_	short-chain alcohol dehydrogenase/reductase 110C-MI3, OsSDR110C family member MI3			7		 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0663700	LOC_Os07g46846.1				GO:0052315 - phytoalexin biosynthetic process, GO:0002238 - response to molecule of fungal origin	TO:0002670 - momilactone A content, TO:0000439 - fungal disease resistance	
21335	_	OsSDR110C-MS3, SDR110C-MS3	_	short-chain alcohol dehydrogenase/reductase 110C-MS3, OsSDR110C family member MS3			4		 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0405300	LOC_Os04g33240.1				GO:0002238 - response to molecule of fungal origin, GO:0052315 - phytoalexin biosynthetic process, GO:0016491 - oxidoreductase activity	TO:0000439 - fungal disease resistance, TO:0002670 - momilactone A content	
21336	_	OsSDR110C-MI2, SDR110C-MI2	_	short-chain alcohol dehydrogenase/reductase 110C-MI2, OsSDR110C family member MI2			7		 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0663600	LOC_Os07g46840.1				GO:0002238 - response to molecule of fungal origin, GO:0016491 - oxidoreductase activity	TO:0000439 - fungal disease resistance	
21337	_	OsSDR110C-MI4, SDR110C-MI4	_	short-chain alcohol dehydrogenase/reductase 110C-MI4, OsSDR110C family member MI4			7		 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0663800	LOC_Os07g46852.4, LOC_Os07g46852.3, LOC_Os07g46852.2, LOC_Os07g46852.1				GO:0002238 - response to molecule of fungal origin	TO:0000439 - fungal disease resistance	
21338	_	OsSDR110C-MS2, SDR110C-MS2	_	short-chain alcohol dehydrogenase/reductase 110C-MS2, OsSDR110C family member MS2			4		 Biochemical character	Os04g0179100	LOC_Os04g10000.1				GO:0019290 - siderophore biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0052315 - phytoalexin biosynthetic process, GO:0008667 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity	TO:0002670 - momilactone A content	
21339	_		_	a homolog of Arabidopsis thaliana HEN1 suppressor 1, HESO1 homolog			1	LOC_Os01g62780.	 Reproductive organ - Heading date	Os01g0846450	LOC_Os01g62780.1				GO:0016021 - integral to membrane, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	
21340	_	OsHIGD3, HIGD3	_	Hypoxia-Induced Gene Domain 3, Hypoxia-Induced Gene Domain Protein 3			11	LOC_Os11g02080.	 Tolerance and resistance - Stress tolerance	Os11g0112000 	LOC_Os11g02080.1				GO:0030912 - response to deep water, GO:0001666 - response to hypoxia	TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity	PO:0025034 - leaf , PO:0009010 - seed , PO:0020037 - mesocotyl , PO:0009005 - root 
21341	_	OsHIGD5, HIGD5	_	Hypoxia-Induced Gene Domain 5, Hypoxia-Induced Gene Domain Protein 5			12	LOC_Os12g02040. GO:0097249: mitochondrial respiratory chain super complex.	 Tolerance and resistance - Stress tolerance	Os12g0111600 	LOC_Os12g02040.1				GO:0001666 - response to hypoxia, GO:0030912 - response to deep water, GO:0033617 - mitochondrial respiratory chain complex IV assembly, GO:0031305 - integral to mitochondrial inner membrane	TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity	PO:0020037 - mesocotyl , PO:0009010 - seed , PO:0025034 - leaf , PO:0009005 - root 
21342	_	OsHIGD4, HIGD4	_	Hypoxia-Induced Gene Domain 4, Hypoxia-Induced Gene Domain Protein 4			2	LOC_Os02g37930. GO:0097249: mitochondrial respiratory chain super complex.		Os02g0592400 	LOC_Os02g37930.1				GO:0033617 - mitochondrial respiratory chain complex IV assembly, GO:0031305 - integral to mitochondrial inner membrane		PO:0025034 - leaf , PO:0009010 - seed 
21343	_		_	malate dehydrogenase			3	LOC_Os03g56280.	 Biochemical character	Os03g0773800	LOC_Os03g56280.1				GO:0005975 - carbohydrate metabolic process, GO:0045454 - cell redox homeostasis, GO:0006099 - tricarboxylic acid cycle, GO:0006108 - malate metabolic process, GO:0030060 - L-malate dehydrogenase activity, GO:0000302 - response to reactive oxygen species, GO:0005739 - mitochondrion		
21344	_	PBI1, OsPBI1	_	OsPUB44-interacting protein 1, PUB44-interacting protein 1			1	domain of unknown function (DUF) family DUF1110. DUF1110 family member. PBI1 is an interactor for a rice U-box-type ubiquitin E3 ligase, OsPUB44 which positively regulates PAMP-triggered immunity downstream of PRRs (Kawasaki et al., in preparation).		Os01g0156300 	LOC_Os01g06340.1						
21345	_		_				1	domain of unknown function (DUF) family DUF1110. DUF1110 family member. DUF1110 protein.		Os01g0156400  	LOC_Os01g06350.1						
21346	_		_				1	domain of unknown function (DUF) family DUF1110. DUF1110 family member. DUF1110 protein.		Os01g0157100   	LOC_Os01g06390.1						
21348	_	OsCOLE1, COLE1	_	OsCONTINUOUS VASCULAR RING-LIKE 1, CONTINUOUS VASCULAR RING-LIKE 1, OsCOV-LIKE 1, COV-LIKE 1			5	a homolog of AtCOV1. LOC_Os05g45280. KT935168. GO:0080162: intracellular auxin transport.	 Vegetative organ - Culm	Os05g0529000	LOC_Os05g45280.1				GO:0009914 - hormone transport, GO:0016021 - integral to membrane, GO:0005773 - vacuole, GO:0009705 - plant-type vacuole membrane	TO:0002672 - auxin content, TO:0000145 - internode length	
21349	_	OsCLIP, CLIP	_	OsCOLE1-INTERACTING PROTEIN, COLE1-INTERACTING PROTEIN			7	LOC_Os07g34110. KT935169. GO:0080162: intracellular auxin transport.	 Vegetative organ - Culm	Os07g0525100	LOC_Os07g34110.1				GO:0022857 - transmembrane transporter activity, GO:0006810 - transport, GO:0005886 - plasma membrane, GO:0009914 - hormone transport, GO:0009705 - plant-type vacuole membrane, GO:0005773 - vacuole, GO:0016021 - integral to membrane		
21350	_	OsPAP2, PAP2, OsPAP2/OspTAC2, OspTAC2, pTAC2	_	PEP-associated protein 1, plastid-encoded plastid polymerase-associated protein 1, plastid transcriptionally active chromosome 2													
21351	_	OsPAP3, PAP3, OsPAP3/OspTAC10, OspTAC10, pTAC10	_	PEP-associated protein 3, plastid-encoded plastid polymerase-associated protein 3, plastid transcriptionally active chromosome 10													
21352	_	OsPAP4, PAP4, OsPAP4/OsFSD3, OsFSD3, FSD3	_	PEP-associated protein 4, plastid-encoded plastid polymerase-associated protein 4													
21353	_	OsPAP5, PAP5, OsPAP5/OspTAC12, OspTAC12, pTAC12	_	PEP-associated protein 5, plastid-encoded plastid polymerase-associated protein 5, plastid transcriptionally active chromosome 12													
21354	_	OsPAP6, PAP6, OsPAP6/OsFLN1, OsFLN1, FLN1	_	PEP-associated protein 6, plastid-encoded plastid polymerase-associated protein 6													
21355	_	OsPAP7, PAP7, OsPAP7/OspTAC14, OspTAC14, pTAC14	_	PEP-associated protein 7, plastid-encoded plastid polymerase-associated protein 7, plastid transcriptionally active chromosome 14													
21356	_	OsPAP8, PAP8	_	PEP-associated protein 8, plastid-encoded plastid polymerase-associated protein 8													
21357	_	OsPAP9, PAP9, OsPAP9/OsFSD2, OsFSD2, FSD2	_	PEP-associated protein 9, plastid-encoded plastid polymerase-associated protein 9													
21358	TRXZ	OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz	THIOREDOXIN Z-TYPE	PEP-associated protein 10, plastid-encoded plastid polymerase-associated protein 10, plastidic thioredoxin Z, THIOREDOXINZ, thioredoxin Z	THIOREDOXIN Z-TYPE	trxz-1, trxz-2, trxz-3, trxz-8, trxz-9, trxz-10, trxz-11	8	LOC_Os08g29110. Q8H2V6. a subunit of PEP in chloroplasts.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os08g0378900	LOC_Os08g29110.2, LOC_Os08g29110.1				GO:0031347 - regulation of defense response, GO:0034051 - negative regulation of plant-type hypersensitive response, GO:0034599 - cellular response to oxidative stress, GO:0045454 - cell redox homeostasis, GO:0047134 - protein-disulfide reductase activity, GO:0009657 - plastid organization, GO:0009295 - nucleoid, GO:0009408 - response to heat, GO:0006952 - defense response, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0008219 - cell death, GO:0005737 - cytoplasm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006662 - glycerol ether metabolic process, GO:0009658 - chloroplast organization, GO:0015035 - protein disulfide oxidoreductase activity, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0009579 - thylakoid, GO:0009507 - chloroplast	TO:0000259 - heat tolerance, TO:0000326 - leaf color	
21359	_	OsPAP11, PAP11	_	PEP-associated protein 11, plastid-encoded plastid polymerase-associated protein 11													
21360	_	OsPAP12, PAP12, OsPAP12/OspTAC7, OspTAC7, pTAC7	_	PEP-associated protein 12, plastid-encoded plastid polymerase-associated protein 12, plastid transcriptionally active chromosome 7													
21361	PHT2	Os-PHT2, OsPHT2	PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 2	putrescine hydroxycinnamoyl transferase 2	PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 2		6	KX430017. LOC_Os06g08610.	 Biochemical character	Os06g0185300	LOC_Os06g08610.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21362	THT1	Os-THT1, OsTHT1	TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 1	Tryptamine hydroxycinnamoyl transferase 1	TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 1		10	KX430019. LOC_Os10g23310.	 Biochemical character	Os10g0379100	LOC_Os10g23310.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21363	THT2	Os-THT2, OsTHT2	TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 2	Tryptamine hydroxycinnamoyl transferase 2	TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 2		10	KX430020. LOC_Os10g23820.	 Biochemical character	Os10g0380100	LOC_Os10g23820.2, LOC_Os10g23820.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21364	TBT1	Os-TBT1, OsTBT1	TRYPTAMINE BENZOYL TRANSFERASE 1	tryptamine benzoyl transferase 1	TRYPTAMINE BENZOYL TRANSFERASE 1		11	KX430021. LOC_Os11g42290.	 Biochemical character	Os11g0642400	LOC_Os11g42290.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21365	MTOPVIB	OsMTOPVIB	_	meiotic DNA topoisomerase VIB subunit, DNA Topoisomerase VI-B Subunit		OsmtopVIB-1, OsmtopVIB-2, OsmtopVIB-3	6	homology with Arabidopsis MTOPVIB. LOC_Os06g49450.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os06g0708200	LOC_Os06g49450.3, LOC_Os06g49450.2, LOC_Os06g49450.1				GO:0042138 - meiotic DNA double-strand break formation, GO:0009555 - pollen development, GO:0010845 - positive regulation of reciprocal meiotic recombination, GO:0007128 - meiotic prophase I, GO:0007130 - synaptonemal complex assembly, GO:0016021 - integral to membrane	TO:0000485 - sterility related trait, TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
21366	_	gammaH2AX	_	histone H2AX gamma					 Reproductive organ - Pollination, fertilization, fertility - Meiosis								
21367	_	OsNPF2.4, NPF2.4	_	NRT1/PTR family 2.4, NO3-/peptide transporter family 2.4		npf2.4, npf2.4-1, npf2.4-2	3	LOC_Os03g48180. GO:0035864: response to potassium ion. GO:1902025: nitrate import.	 Biochemical character	Os03g0687000	LOC_Os03g48180.2, LOC_Os03g48180.1				GO:0080055 - low affinity nitrate transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005215 - transporter activity	TO:0000513 - potassium concentration, TO:0000008 - potassium sensitivity	PO:0005679 - epidermis 
21368	_	UPF3	_	Nonsense-mediated decay UPF3			4	LOC_Os04g35920.2.	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0440100	LOC_Os04g35920.2				GO:0000166 - nucleotide binding, GO:0048653 - anther development		PO:0001004 - anther development stage 
21369	UMAMIT1	OsUMAMIT1	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 1	Usually Multiple Acids Move In and out Transporter 1	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 1		1	LOC_Os01g02870.	 Biochemical character	Os01g0117900	LOC_Os01g02870.1				GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane		
21370	UMAMIT2	OsUMAMIT2	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 2	Usually Multiple Acids Move In and out Transporter 2	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 2		1	LOC_Os01g10970.	 Biochemical character	Os01g0207700	LOC_Os01g10970.1				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006810 - transport		
21371	UMAMIT3	OsUMAMIT3	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 3	Usually Multiple Acids Move In and out Transporter 3	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 3		1	LOC_Os01g10980.	 Biochemical character	Os01g0207900	LOC_Os01g10980.1				GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0016021 - integral to membrane		
21372	UMAMIT4	OsUMAMIT4	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 4	Usually Multiple Acids Move In and out Transporter 4	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 4		1	LOC_Os01g10990.	 Biochemical character	Os01g0208000	LOC_Os01g10990.1				GO:0005886 - plasma membrane, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006810 - transport		
21373	UMAMIT8	OsUMAMIT8	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 8	Usually Multiple Acids Move In and out Transporter 8	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 8		5	LOC_Os05g01570.	 Biochemical character	Os05g0106200	LOC_Os05g01570.1				GO:0005886 - plasma membrane, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006810 - transport		
21374	UMAMIT5	OsUMAMIT5	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 5	Usually Multiple Acids Move In and out Transporter 5	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 5		1	LOC_Os01g19290.	 Biochemical character	Os01g0297700	LOC_Os01g19290.1				GO:0006810 - transport, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
21375	UMAMIT6	OsUMAMIT6	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 6	Usually Multiple Acids Move In and out Transporter 6	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 6		2	LOC_Os02g47500.	 Biochemical character	Os02g0703900	LOC_Os02g47500.1				GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity		
21376	UMAMIT7	OsUMAMIT7	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 7	Usually Multiple Acids Move In and out Transporter 7	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 7		4	LOC_Os04g59120.	 Biochemical character	Os04g0687800	LOC_Os04g59120.1				GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane		
21377	UMAMIT9	OsUMAMIT9	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 9	Usually Multiple Acids Move In and out Transporter 9	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 9		5	LOC_Os05g33900.	 Biochemical character	Os05g0409500	LOC_Os05g33900.1				GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0016021 - integral to membrane		
21378	UMAMIT10	OsUMAMIT10	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 10	Usually Multiple Acids Move In and out Transporter 10	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 10		6	LOC_Os06g01660.	 Biochemical character	Os06g0105700	LOC_Os06g01660.1				GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0006810 - transport		
21379	UMAMIT11	OsUMAMIT11	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 11	Usually Multiple Acids Move In and out Transporter 11	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 11		7	LOC_Os07g30210.	 Biochemical character	Os07g0485500	LOC_Os07g30210.2, LOC_Os07g30210.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0022857 - transmembrane transporter activity		
21380	UMAMIT12	OsUMAMIT12	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 12	Usually Multiple Acids Move In and out Transporter 12	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 12		8	LOC_Os08g44750.	 Biochemical character	Os08g0561500	LOC_Os08g44750.1				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0006810 - transport, GO:0005886 - plasma membrane		
21381	UMAMIT13	OsUMAMIT13	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 13	Usually Multiple Acids Move In and out Transporter 13	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 13		9	LOC_Os09g25770.	 Biochemical character	Os09g0426000	LOC_Os09g25770.2, LOC_Os09g25770.1				GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006810 - transport		
21382	UMAMIT14	OsUMAMIT14	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 14	Usually Multiple Acids Move In and out Transporter 14	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 14		9	LOC_Os09g25810.	 Biochemical character	Os09g0426500	LOC_Os09g25810.2				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity		
21383	UMAMIT15	OsUMAMIT15	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 15	Usually Multiple Acids Move In and out Transporter 15	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 15		10	LOC_Os10g14920. GO:0080144: amino acid homeostasis.	 Biochemical character	Os10g0210500	LOC_Os10g14920.7, LOC_Os10g14920.6, LOC_Os10g14920.5, LOC_Os10g14920.3, LOC_Os10g14920.2, LOC_Os10g14920.1				GO:0016021 - integral to membrane, GO:0032973 - amino acid export, GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0043090 - amino acid import		
21384	MFS1	OsMFS1	MAJOR FACILITATOR SUPERFAMILY 1	major facilitator superfamily 1	MAJOR FACILITATOR SUPERFAMILY 1		3	LOC_Os03g47810.		Os03g0682100	LOC_Os03g47810.1				GO:0016021 - integral to membrane		
21385	MFS2	OsMFS2	MAJOR FACILITATOR SUPERFAMILY 2	major facilitator superfamily 2	MAJOR FACILITATOR SUPERFAMILY 2		4	LOC_Os04g42420.	 Biochemical character	Os04g0502800	LOC_Os04g42420.3, LOC_Os04g42420.2, LOC_Os04g42420.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
21386	MFS3	OsMFS3	MAJOR FACILITATOR SUPERFAMILY 3	major facilitator superfamily 3	MAJOR FACILITATOR SUPERFAMILY 3		5	LOC_Os05g39800.		Os05g0475700	LOC_Os05g39800.1				GO:0016021 - integral to membrane		
21387	MFS4	OsMFS4	MAJOR FACILITATOR SUPERFAMILY 4	major facilitator superfamily 4	MAJOR FACILITATOR SUPERFAMILY 4		8	LOC_Os08g42010.		Os08g0532400	LOC_Os08g42010.1				GO:0016021 - integral to membrane		
21388	MFS5	OsMFS5	MAJOR FACILITATOR SUPERFAMILY 5	major facilitator superfamily 5	MAJOR FACILITATOR SUPERFAMILY 5		9	LOC_Os09g36600.		Os09g0536700	LOC_Os09g36600.2, LOC_Os09g36600.1				GO:0016021 - integral to membrane		
21389	MFS6	OsMFS6	MAJOR FACILITATOR SUPERFAMILY 6	major facilitator superfamily 6	MAJOR FACILITATOR SUPERFAMILY 6		11	LOC_Os11g01590.		Os11g0107400	LOC_Os11g01590.1				GO:0016021 - integral to membrane		
21390	MFS7	OsMFS7	MAJOR FACILITATOR SUPERFAMILY 7	major facilitator superfamily 7	MAJOR FACILITATOR SUPERFAMILY 7		12	LOC_Os12g01570.		Os12g0106500	LOC_Os12g01570.1				GO:0016021 - integral to membrane		
21391	MFS8	OsMFS8	MAJOR FACILITATOR SUPERFAMILY 8	major facilitator superfamily 8	MAJOR FACILITATOR SUPERFAMILY 8		12	LOC_Os12g44180.	 Biochemical character	Os12g0639100	LOC_Os12g44180.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
21392	_		_	OsNodulin-like1, Nodulin-like1			4	LOC_Os04g45520. B7F138. Vacuolar Iron Transporter/Nodulin-like family. GO:0071281: cellular response to iron ion. GO:0071421: manganese ion transmembrane transport.	 Biochemical character	Os04g0538400	LOC_Os04g45520.1				GO:0006880 - intracellular sequestering of iron ion, GO:0005774 - vacuolar membrane, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0030026 - cellular manganese ion homeostasis, GO:0005384 - manganese ion transmembrane transporter activity, GO:0005381 - iron ion transmembrane transporter activity		
21393	_		_	OsNodulin-like2, Nodulin-like2			4	LOC_Os04g59020. Q7XTL7. Vacuolar Iron Transporter/Nodulin-like family. GO:0071281: cellular response to iron ion. GO:0071421: manganese ion transmembrane transport.	 Biochemical character	Os04g0686800	LOC_Os04g59020.1				GO:0016020 - membrane, GO:0030026 - cellular manganese ion homeostasis, GO:0005381 - iron ion transmembrane transporter activity, GO:0005384 - manganese ion transmembrane transporter activity, GO:0006880 - intracellular sequestering of iron ion, GO:0005774 - vacuolar membrane, GO:0016021 - integral to membrane		
21394	_	ARGOS	_				11	LOC_Os11g14190. related to auxin signaling.		Os11g0247000	LOC_Os11g14190.2, LOC_Os11g14190.1				GO:0016021 - integral to membrane		
21395	_		_	Cytokinin-O-glucosyltransferase2, Cytokinin-O-glucosyltransferase 2			6	LOC_Os06g11720. related to cytokinin signaling. GO:0052696 flavonoid glucuronidation.	 Biochemical character	Os06g0220500	LOC_Os06g11720.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0009813 - flavonoid biosynthetic process		
21396	_		_	BRASSINOSTEROID INSENSITIVE1, BRASSINOSTEROID INSENSITIVE 1			7	LOC_Os07g40630. related to Brassinosteroid signaling. 		Os07g0597200	LOC_Os07g40630.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
21397	PT19	OsPT19	PHOSPHATE TRANSPORTER 19	phosphate transporter 19	PHOSPHATE TRANSPORTER 19		9	LOC_Os09g28160.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0454600	LOC_Os09g28160.1				GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0003735 - structural constituent of ribosome, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0016036 - cellular response to phosphate starvation, GO:0005777 - peroxisome, GO:0006412 - translation	TO:0000167 - cytokinin sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	
21398	PT14	OsPT14	PHOSPHATE TRANSPORTER 14	phosphate transporter 14	PHOSPHATE TRANSPORTER 14		2	LOC_Os02g38020. GO:0035435: phosphate ion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0593500	LOC_Os02g38020.2, LOC_Os02g38020.1				GO:0016036 - cellular response to phosphate starvation, GO:0005886 - plasma membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0005887 - integral to plasma membrane	TO:0000102 - phosphorus sensitivity	
21399	PT16	OsPT16	POSPHATE TRANSPORTER 16	phosphate transporter 16	POSPHATE TRANSPORTER 16		3	LOC_Os03g15690. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0263400	LOC_Os03g15690.2, LOC_Os03g15690.1				GO:0003735 - structural constituent of ribosome, GO:0005789 - endoplasmic reticulum membrane, GO:0006412 - translation, GO:0016036 - cellular response to phosphate starvation, GO:0016021 - integral to membrane, GO:0006810 - transport	TO:0000102 - phosphorus sensitivity	
21400	PT22	OsPT22	PHOSPHATE TRANSPORTER 22	phosphate transporter 22	PHOSPHATE TRANSPORTER 22		1	LOC_Os01g63290. Q8W0H5. GO:0098656: anion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0852200	LOC_Os01g63290.2, LOC_Os01g63290.1				GO:0006811 - ion transport, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0016036 - cellular response to phosphate starvation, GO:0031969 - chloroplast membrane, GO:0009737 - response to abscisic acid stimulus	TO:0000102 - phosphorus sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity	
21401	PT15	OsPT15	PHOSPHATE TRANSPORTER 15	phosphate transporter 15	PHOSPHATE TRANSPORTER 15		2	LOC_Os02g52860. 	 Biochemical character	Os02g0767500	LOC_Os02g52860.1				GO:0006810 - transport, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005777 - peroxisome, GO:0032592 - integral to mitochondrial membrane		
21402	PT17	OsPT17	PHOSPHATE TRANSPORTER 17	phosphate transporter 17	PHOSPHATE TRANSPORTER 17		4	LOC_Os04g37600. 	 Biochemical character	Os04g0448800	LOC_Os04g37600.1				GO:0006412 - translation, GO:0005886 - plasma membrane, GO:0003735 - structural constituent of ribosome, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0006810 - transport	TO:0000163 - auxin sensitivity	PO:0009029 - stamen 
21403	PT18	OsPT18	PHOSPHATE TRANSPORTER 18	phosphate transporter 18	PHOSPHATE TRANSPORTER 18		6	LOC_Os06g10810. 	 Biochemical character	Os06g0210500	LOC_Os06g10810.1				GO:0006412 - translation, GO:0016021 - integral to membrane, GO:0003735 - structural constituent of ribosome, GO:0005777 - peroxisome, GO:0006810 - transport		
21404	PT21	OsPT21	PHOSPHATE TRANSPORTER 21	phosphate transporter 21	PHOSPHATE TRANSPORTER 21		1	LOC_Os01g17240. Q9SDI4. GO:0098656: anion transmembrane transport.	 Biochemical character	Os01g0279700	LOC_Os01g17240.1				GO:0009536 - plastid, GO:0005777 - peroxisome, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0031969 - chloroplast membrane, GO:0016021 - integral to membrane		PO:0020103 - flag leaf 
21405	PT23	OsPT23	PHOSPHATE TRANSPORTER 23	phosphate transporter 23	PHOSPHATE TRANSPORTER 23		5	LOC_Os05g37820. Q53WP9. GO:0098656: anion transmembrane transport.	 Biochemical character	Os05g0451100	LOC_Os05g37820.1				GO:0005886 - plasma membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane, GO:0009536 - plastid		
21406	PT24	OsPT24	PHOSPHATE TRANSPORTER 24	phosphate transporter 24	PHOSPHATE TRANSPORTER 24		9	LOC_Os09g39680. Q652N5. GO:0098656: anion transmembrane transport.	 Biochemical character	Os09g0570400	LOC_Os09g39680.1				GO:0016021 - integral to membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0031969 - chloroplast membrane, GO:0005886 - plasma membrane, GO:0009536 - plastid		PO:0020103 - flag leaf 
21407	PT25	OsPT25	PHOSPHATE TRANSPORTER 25	phosphate transporter 25	PHOSPHATE TRANSPORTER 25		11	LOC_Os11g08370. Q53P54. GO:0098656: anion transmembrane transport.	 Biochemical character	Os11g0186800	LOC_Os11g08370.1				GO:0009536 - plastid, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0005789 - endoplasmic reticulum membrane, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
21408	PT26	OsPT26	PHOSPHATE TRANSPORTER 26	phosphate transporter 26	PHOSPHATE TRANSPORTER 26		12	LOC_Os12g07970. Q2QWW7. GO:0098656: anion transmembrane transport.	 Biochemical character	Os12g0180100	LOC_Os12g07970.4, LOC_Os12g07970.3, LOC_Os12g07970.2, LOC_Os12g07970.1				GO:0005789 - endoplasmic reticulum membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
21409	2CYSPRXB	Os2-Cys PrxB, 2-Cys PrxB	2-CYS PEROXIREDOXIN B	peroxiredoxin, 2-Cys peroxiredoxin B	2-CYS PEROXIREDOXIN B		4	LOC_Os04g33970.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0416400	LOC_Os04g33970.1				GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0009555 - pollen development, GO:0051920 - peroxiredoxin activity	TO:0000175 - bacterial blight disease resistance	PO:0001007 - pollen development stage , PO:0025281 - pollen 
21410	YL1		YELLOW LEAF 1	yellow leaf 1		yl1, yl1-1, yl1-2	2	LOC_Os02g05890. TO:0006060: leaf chlorosis.	 Vegetative organ - Culm,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os02g0152900	LOC_Os02g05890.1				GO:0009658 - chloroplast organization, GO:0009507 - chloroplast	TO:0000592 - 1000-dehulled grain weight, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000316 - photosynthetic ability, TO:0000207 - plant height, TO:0000346 - tiller number	
21411	_	P31comet, OsBVF1, BVF1	_	Bivalent Formation 1		p31comet-1, p31comet-2, bvf1	5	LOC_Os05g16250. a synaptonemal complex (SC) protein. OmpH/coiled-coil motif-containing protein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0251400	LOC_Os05g16250.1				GO:0045132 - meiotic chromosome segregation, GO:0000706 - meiotic DNA double-strand break processing, GO:0000795 - synaptonemal complex, GO:0070193 - synaptonemal complex organization, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0042138 - meiotic DNA double-strand break formation, GO:0005634 - nucleus, GO:0000241 - diakinesis, GO:0007129 - synapsis, GO:0007131 - reciprocal meiotic recombination, GO:0007133 - meiotic anaphase I	TO:0000485 - sterility related trait, TO:0000180 - spikelet fertility	PO:0009066 - anther 
21412	LRD6-6 	LMR	LESION RESEMBLING DISEASE 6-6	lesion resembling disease 6-6, LESION MIMIC RESEMBLING		lrd6-6	6	LOC_Os06g03940. Multivesicular Bodies (MVBs)-Localized AAA ATPase. GO:0071985: multivesicular body sorting pathway.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0130000	LOC_Os06g03940.1				GO:0005634 - nucleus, GO:0016887 - ATPase activity, GO:0031122 - cytoplasmic microtubule organization, GO:0016192 - vesicle-mediated transport, GO:0008568 - microtubule-severing ATPase activity, GO:0005524 - ATP binding, GO:0002785 - negative regulation of antimicrobial peptide production, GO:0031348 - negative regulation of defense response, GO:0060548 - negative regulation of cell death, GO:0060627 - regulation of vesicle-mediated transport	TO:0000112 - disease resistance	
21413	_	OsVPS2, VPS2	_	VPS2 component of ESCRT-III complex, ESCRT-III complex VPS2 component			3	LOC_Os03g43860.	 Biochemical character	Os03g0639800	LOC_Os03g43860.1				GO:0007034 - vacuolar transport		
21414	_	OsSNF7, SNF7, OsSnf7, Snf7	_	SNF7 component of ESCRT-III complex, ESCRT-III complex SNF7 component			6	LOC_Os06g40620.	 Biochemical character	Os06g0608500	LOC_Os06g40620.2, LOC_Os06g40620.1				GO:0007034 - vacuolar transport		
21415	_	OsSKD1, SKD1	_				1	LOC_Os01g04814. AtSKD1 homolog.	 Biochemical character	Os01g0141100	LOC_Os01g04814.4, LOC_Os01g04814.3, LOC_Os01g04814.1				GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0007033 - vacuole organization		
21416	GLP1-1	OsGLP1-1	GERMIN-LIKE PROTEIN 1-1	Germin-like protein 1-1	GERMIN-LIKE PROTEIN 1-1		1	LOC_Os01g14670. GO:2000280: regulation of root development.		Os01g0249200	LOC_Os01g14670.1				GO:0030145 - manganese ion binding, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0033609 - oxalate metabolic process, GO:0046564 - oxalate decarboxylase activity, GO:0045735 - nutrient reservoir activity, GO:0009506 - plasmodesma		
21417	GLP1-3	OsGLP1-3, OsGLP1-2, GLP1-2	GERMIN-LIKE PROTEIN 1-3	Germin-like protein 1-3	GERMIN-LIKE PROTEIN 1-3		1	Q94JF3. OsGLP1-2 in Das et al. 2019.		Os01g0705100	LOC_Os01g50900.1				GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast		
21418	GLP1-5	OsGLP1-5, OsGLP1-4, GLP1-4	GERMIN-LIKE PROTEIN 1-5	Germin-like protein 1-5	GERMIN-LIKE PROTEIN 1-5		1	Q942A7. GO:2000280: regulation of root development. OsGLP1-4 in Das et al. 2019.		Os01g0952100	LOC_Os01g72300.1				GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0009506 - plasmodesma		
21419	GLP2-1	OsGLP2-1	GERMIN-LIKE PROTEIN 2-1	Germin-like protein 2-1	GERMIN-LIKE PROTEIN 2-1		2	Q6K5Q0. 	 Tolerance and resistance - Disease resistance	Os02g0491600	LOC_Os02g29000.1				GO:0050832 - defense response to fungus, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity	TO:0000074 - blast disease	
21420	GLP2-2	OsGLP2-2	GERMIN-LIKE PROTEIN 2-2	Germin-like protein 2-2	GERMIN-LIKE PROTEIN 2-2		2	Q6K5P9. 		Os02g0491700	LOC_Os02g29010.1				GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast		
21421	GLP2-3	OsGLP2-3	GERMIN-LIKE PROTEIN 2-3	Germin-like protein 2-3	GERMIN-LIKE PROTEIN 2-3		2	Q6K5P8. 		Os02g0491800	LOC_Os02g29020.1				GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast		
21422	GLP2-4	OsGLP2-4, OsGLP2-1, GLP2-1	GERMIN-LIKE PROTEIN 2-4	Germin-like protein 2-4, german-like protein 2-1	GERMIN-LIKE PROTEIN 2-4		2	Q6ESF0. LOC_Os02g32980. OsGLP2-1 in Liu et al. 2016. GO: 1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0532500	LOC_Os02g32980.1				GO:0030912 - response to deep water, GO:0005618 - cell wall, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0030145 - manganese ion binding, GO:0032502 - developmental process, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus	TO:0000286 - submergence sensitivity, TO:0000605 - hydrogen peroxide content, TO:0002668 - jasmonic acid content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000477 - panicle blast disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity	
21423	GLP3-1	OsGLP3-1	GERMIN-LIKE PROTEIN 3-1	Germin-like protein 3-1	GERMIN-LIKE PROTEIN 3-1		3	Q8H021. 		Os03g0179100	LOC_Os03g08150.1				GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity		
21424	GLP3-2	OsGLP3-2	GERMIN-LIKE PROTEIN 3-2	Germin-like protein 3-2	GERMIN-LIKE PROTEIN 3-2		3	Q7XZY1. GO:2000280: regulation of root development.		Os03g0651800	LOC_Os03g44880.1				GO:0009506 - plasmodesma, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity		
21425	GLP3-8	OsGLP3-8	GERMIN-LIKE PROTEIN 3-8	Germin-like protein 3-8	GERMIN-LIKE PROTEIN 3-8		3	Q75HJ4.		Os03g0804700	LOC_Os03g59010.1				GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity		
21426	GLP3-9	OsGLP3-9	GERMIN-LIKE PROTEIN 3-9	Germin-like protein 3-9	GERMIN-LIKE PROTEIN 3-9		3	LOC_Os03g58990.		Os03g0804600	LOC_Os03g58990.1				GO:0045735 - nutrient reservoir activity		
21427	GLP5-1	OsGLP5-1	GERMIN-LIKE PROTEIN 5-1	Germin-like protein 5-1	GERMIN-LIKE PROTEIN 5-1		5	LOC_Os05g10830. Q688L5.		Os05g0197200	LOC_Os05g10830.2, LOC_Os05g10830.1				GO:0045735 - nutrient reservoir activity, GO:0030145 - manganese ion binding, GO:0046564 - oxalate decarboxylase activity, GO:0033609 - oxalate metabolic process, GO:0048046 - apoplast, GO:0005618 - cell wall		
21428	GLP5-2	OsGLP5-2, OsGLP5-1, GLP5-1	GERMIN-LIKE PROTEIN 5-2	Germin-like protein 5-2	GERMIN-LIKE PROTEIN 5-2		5	Q6I544. GO:2000280: regulation of root development. OsGLP5-1 in Das et al. 2019.	 Tolerance and resistance - Stress tolerance	Os05g0277500	LOC_Os05g19670.1				GO:0030912 - response to deep water, GO:0005618 - cell wall, GO:0009506 - plasmodesma, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast, GO:0032502 - developmental process	TO:0000286 - submergence sensitivity	
21429	GLP8-13	OsGLP8-13	GERMIN-LIKE PROTEIN 8-13	Germin-like protein 8-13	GERMIN-LIKE PROTEIN 8-13		8	Q6Z964.		Os08g0459700	LOC_Os08g35750.1				GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0032502 - developmental process, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity		
21430	GLP9-1	OsGLP9-1	GERMIN-LIKE PROTEIN 9-1	Germin-like protein 9-1	GERMIN-LIKE PROTEIN 9-1		9	Q652Q1.		Os09g0568500	LOC_Os09g39510.1				GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast		
21431	GLP9-2	OsGLP9-2	GERMIN-LIKE PROTEIN 9-2	Germin-like protein 9-2	GERMIN-LIKE PROTEIN 9-2		9	Q652Q0.		Os09g0568600	LOC_Os09g39520.1				GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity		
21432	GLP9-3	OsGLP9-3	GERMIN-LIKE PROTEIN 9-3	Germin-like protein 9-3	GERMIN-LIKE PROTEIN 9-3		9	Q652P9.		Os09g0568700	LOC_Os09g39530.1				GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity		PO:0009073 - stigma 
21433	GLP11-1	OsGLP11-1	GERMIN-LIKE PROTEIN 11-1	Germin-like protein 11-1	GERMIN-LIKE PROTEIN 11-1		11	Q2R352.	 Tolerance and resistance - Stress tolerance	Os11g0537350	LOC_Os11g33110.1				GO:0009409 - response to cold, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity	TO:0000303 - cold tolerance	
21434	_	OsMeCP, MeCP	_	methyl-CpG binding domain protein, Methyl-CpG binding domain containing protein			12	GO:1902067: silicic acid import. a trans-acting factor.	 Tolerance and resistance - Stress tolerance	Os12g0620400	LOC_Os12g42550.2, LOC_Os12g42550.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0034021 - response to silicon dioxide, GO:0010224 - response to UV-B	TO:0000031 - silicon sensitivity, TO:0000601 - UV-B light sensitivity	
21435	_		_	cryptochrome			6	cryptochrome with blue-light photoreceptor activity but lacks photolyase activity. Q651U1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0661800	LOC_Os06g45100.1				GO:0005739 - mitochondrion, GO:0003677 - DNA binding, GO:0003913 - DNA photolyase activity, GO:0006281 - DNA repair, GO:0018298 - protein-chromophore linkage, GO:0009507 - chloroplast, GO:0010224 - response to UV-B, GO:0009881 - photoreceptor activity	TO:0000601 - UV-B light sensitivity	
21436	_		_	(6-4) DNA photolyase			2	Q0E2Y1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0204400 	LOC_Os02g10990.1				GO:0009411 - response to UV, GO:0003677 - DNA binding, GO:0003914 - DNA (6-4) photolyase activity, GO:0010224 - response to UV-B, GO:0006281 - DNA repair, GO:0000166 - nucleotide binding	TO:0000601 - UV-B light sensitivity	
21437	_		_	deoxyribodipyrimidine photolyase protein-like family protein			9	.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0532700  	LOC_Os09g36240.4, LOC_Os09g36240.3, LOC_Os09g36240.2, LOC_Os09g36240.1				GO:0016787 - hydrolase activity, GO:0010224 - response to UV-B, GO:0016829 - lyase activity	TO:0000601 - UV-B light sensitivity	
21438	_	PHR2	_				3	a putative photolyase/blue-light receptor PHR2	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0343400   	LOC_Os03g22330.1				GO:0016829 - lyase activity, GO:0010224 - response to UV-B	TO:0000601 - UV-B light sensitivity	
21439	_	OsAGO2b, AGO2b	_	Argonaute 2b					 Reproductive organ - Pollination, fertilization, fertility - Meiosis						GO:0007126 - meiosis		PO:0009066 - anther 
21440	EIF6	eIF-6, OseIF6	EUKARYOTIC INITIATION FACTOR 6	Eukaryotic translation initiation factor 6	EUKARYOTIC INITIATION FACTOR 6		7	GO:1902626: assembly of large subunit precursor of pre ribosome.	 Other	Os07g0639800	LOC_Os07g44620.2, LOC_Os07g44620.1				GO:0005730 - nucleolus, GO:0003743 - translation initiation factor activity, GO:0043022 - ribosome binding, GO:0043023 - ribosomal large subunit binding, GO:0009793 - embryonic development ending in seed dormancy, GO:0000460 - maturation of 5.8S rRNA, GO:0000470 - maturation of LSU-rRNA, GO:0042256 - mature ribosome assembly, GO:0000054 - ribosome export from nucleus, GO:0005829 - cytosol, GO:0030687 - preribosome, large subunit precursor		
21441	IF	OsIFL, IFL, OsIF	INTERMEDIATE FILAMENT	intermediate filament like protein, intermediate filament			1	LOC_Os01g18840. GO:2000021: regulation of ion homeostasis. GO:1901002: positive regulation of response to salt stress. TO: 0020076: phenolic compound content.	 Tolerance and resistance - Stress tolerance	Os01g0292700	LOC_Os01g18840.1				GO:0005856 - cytoskeleton, GO:0005829 - cytosol, GO:0006970 - response to osmotic stress, GO:0050801 - ion homeostasis, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0006007 - polysaccharide content, TO:0006001 - salt tolerance, TO:0006002 - proline content, TO:0000095 - osmotic response sensitivity, TO:0000281 - metabolite content related trait, TO:0000333 - sugar content, TO:0000300 - glucose content, TO:0006005 - fructose content, TO:0002673 - amino acid content, TO:0002674 - tryptophan content, TO:0000495 - chlorophyll content, TO:0000525 - sodium to potassium content ratio	
21442	_	TIP1	_	palmitoyltransferase TIP1			2	LOC_Os02g09130.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0184000	LOC_Os02g09130.1				GO:0009628 - response to abiotic stimulus, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane, GO:0006950 - response to stress	TO:0000179 - biotic stress trait	
21443	LPR1 	OsLPR1	LOW PHOSPHATE ROOT 1	Low Phosphate Root1, Low Phosphate Root 1			1	LOC_Os01g03530.	 Biochemical character	Os01g0126100	LOC_Os01g03530.2, LOC_Os01g03530.1				GO:0019028 - viral capsid, GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions		
21444	LPR2	OsLPR2	LOW PHOSPHATE ROOT 2	Low Phosphate Root2, Low Phosphate Root 2			1	LOC_Os01g03549.	 Biochemical character	Os01g0126200	LOC_Os01g03549.1				GO:0005507 - copper ion binding, GO:0019028 - viral capsid, GO:0016722 - oxidoreductase activity, oxidizing metal ions		PO:0009006 - shoot system 
21445	LPR3	OsLPR3	LOW PHOSPHATE ROOT 3	Low Phosphate Root3, Low Phosphate Root 3			1	LOC_Os01g03630. TO:0020102: phosphate content.	 Biochemical character	Os01g0127000	LOC_Os01g03630.1				GO:0005507 - copper ion binding, GO:0019028 - viral capsid, GO:0016036 - cellular response to phosphate starvation, GO:0016722 - oxidoreductase activity, oxidizing metal ions	TO:0000465 - mineral and ion content related trait	PO:0009005 - root 
21446	LPR4	OsLPR4	LOW PHOSPHATE ROOT 4	Low Phosphate Root4, Low Phosphate Root 4			1	LOC_Os01g03620.	 Biochemical character	Os01g0126900	LOC_Os01g03620.1				GO:0019028 - viral capsid, GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions		PO:0009005 - root 
21447	RUS1	OsRUS1	ROOT UV-B SENSITIVE 1				4	ortholog for AtRUS1.		Os04g0290800	LOC_Os04g22360.1				GO:0032502 - developmental process, GO:0005739 - mitochondrion, GO:0009941 - chloroplast envelope, GO:0010224 - response to UV-B		
21448	RUS2	OsRUS2, OsRUS2.1, OsRUS2.2	ROOT UV-B SENSITIVE 2				4	ortholog for AtRUS2.		Os04g0517300	LOC_Os04g43690.2, LOC_Os04g43690.1				GO:0010224 - response to UV-B, GO:0005739 - mitochondrion, GO:0009926 - auxin polar transport, GO:0009941 - chloroplast envelope		
21449	RUS3	OsRUS3	ROOT UV-B SENSITIVE 3				3	ortholog for AtRUS3.		Os03g0213700	LOC_Os03g11500.1				GO:0016021 - integral to membrane		
21450	RUS5	OsRUS5	ROOT UV-B SENSITIVE 5				1	ortholog for AtRUS5.		Os01g0141600	LOC_Os01g04860.1						
21451	RUS6A	OsRUS6A	ROOT UV-B SENSITIVE 6A				1	ortholog for AtRUS6.		Os01g0886900	LOC_Os01g66350.1						
21452	RUS6B	OsRUS6B	ROOT UV-B SENSITIVE 6B				5	ortholog for AtRUS6.		Os05g0419200	LOC_Os05g34650.2, LOC_Os05g34650.1						
21453	GPA4 	GOT1B, GLUP2	GLUTELIN PRECURSOR ACCUMULATION 4	glutelin precursor accumulation4, glutelin precursor accumulation, GOLGI TRANSPORT 1B	GOLGI TRANSPORT 1B	gpa4, gpa4-1, gpa4-2	3	GO:0090114: COPII-coated vesicle budding GO:0071806: protein transmembrane transport.		Os03g0209400 	LOC_Os03g11100.1				GO:0070861 - regulation of protein exit from endoplasmic reticulum, GO:0070971 - endoplasmic reticulum exit site, GO:0016192 - vesicle-mediated transport, GO:0016021 - integral to membrane		PO:0009089 - endosperm 
21454	TAC3		TILLER ANGLE CONTROL 3 	Tiller Angle Control 3			3	LOC_Os03g51660.	 Vegetative organ - Culm	Os03g0726700	LOC_Os03g51660.1				GO:0010052 - guard cell differentiation	TO:0000567 - tiller angle	PO:0008039 - stem base 
21455	_	OsNPF7.2, NPF7.2	_	nitrate transporter 1/peptide transporter family gene 7.2, NRT1/PTR family 7.2		osnpf7.2-1, osnpf7.2-2, osnpf7.2	2	TO:0020099: nitrate transport. TO:0020098: nitrate sensitivity. TO:0020094: nitrate content. TO:0020100: nitrate uptake. GO: 1902347: response to strigoractone. GO:2000280: regulation of root development. GO:1901601: strigolactone biosynthetic process.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0699000	LOC_Os02g47090.1				GO:0005215 - transporter activity, GO:0051726 - regulation of cell cycle, GO:0009690 - cytokinin metabolic process, GO:0009736 - cytokinin mediated signaling, GO:0009705 - plant-type vacuole membrane, GO:0080055 - low affinity nitrate transport, GO:0051302 - regulation of cell division, GO:0016021 - integral to membrane, GO:0048364 - root development	TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000084 - root number, TO:0000578 - root fresh weight, TO:0002660 - cytokinin content, TO:0000656 - root development trait, TO:0000078 - root dry weight, TO:0000396 - grain yield, TO:0000011 - nitrogen sensitivity, TO:0000227 - root length	PO:0009005 - root , PO:0007520 - root development stage 
21456	XOAT13	OsTBL1, TBL1, OsXOAT13	XYLAN O-ACETYLTRANSFERASE 13	trichome birefringence-like 1, xylan O-acetyltransferase 13	XYLAN O-ACETYLTRANSFERASE 13	ostbl1, tbl1	12	LOC_Os12g01560. MH037027. GO:0071554: cell wall organization or biogenesis.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os12g0106300	LOC_Os12g01560.1				GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0042545 - cell wall modification	TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance	
21457	XOAT12	OsTBL2, TBL2, OsXOAT12	XYLAN O-ACETYLTRANSFERASE 12	trichome birefringence-like 2, xylan O-acetyltransferase 12	XYLAN O-ACETYLTRANSFERASE 12	ostbl2, tbl2	11	LOC_Os11g01570. MH037026. GO:0071554: cell wall organization or biogenesis.	 Biochemical character,  Vegetative organ - Culm	Os11g0107000	LOC_Os11g01570.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0042545 - cell wall modification, GO:0016021 - integral to membrane	TO:0000207 - plant height	
21458	XOAT14	OsTBL3, TBL3, OsXOAT14	XYLAN O-ACETYLTRANSFERASE 14	trichome birefringence-like 3, xylan O-acetyltransferase 14	XYLAN O-ACETYLTRANSFERASE 14		3	LOC_Os03g60300. MH037028. GO:1990538: xylan O-acetyltransferase activity. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0817500	LOC_Os03g60300.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0045492 - xylan biosynthetic process, GO:0016413 - O-acetyltransferase activity		
21459	XOAT9	OsTBL4, TBL4, OsXOAT9	XYLAN O-ACETYLTRANSFERASE 9	trichome birefringence-like 4, xylan O-acetyltransferase 9	XYLAN O-ACETYLTRANSFERASE 9		5	LOC_Os05g28830. MH037023. GO:1990538: xylan O-acetyltransferase activity. GO:0071554: cell wall organization or biogenesis. GO:1990937:xylan acetylation.	 Biochemical character	Os05g0356700	LOC_Os05g28830.1				GO:0009834 - secondary cell wall biogenesis, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21460	XOAT10	OsTBL5, TBL5, OsXOAT10	XYLAN O-ACETYLTRANSFERASE 10	trichome birefringence-like 5, xylan O-acetyltransferase 10	XYLAN O-ACETYLTRANSFERASE 10		3	LOC_Os03g60350. MH037024. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0817900	LOC_Os03g60350.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21461	XOAT11	OsTBL6, TBL6, OsXOAT11	XYLAN O-ACETYLTRANSFERASE 11	trichome birefringence-like 6, xylan O-acetyltransferase 11	XYLAN O-ACETYLTRANSFERASE 11		3	LOC_Os03g60340. MH037025. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0817800	LOC_Os03g60340.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21462	_	OsTBL7, TBL7	_	trichome birefringence-like 7			4	LOC_Os04g58340. 			LOC_Os04g58340						
21463	XOAT8	OsTBL8, TBL8, OsXOAT8	XYLAN O-ACETYLTRANSFERASE 8	trichome birefringence-like 8, xylan O-acetyltransferase 8	XYLAN O-ACETYLTRANSFERASE 8		3	LOC_Os03g18120. MH037022. GO:1990538: xylan O-acetyltransferase activity. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0291200	LOC_Os03g18120.1				GO:0005886 - plasma membrane, GO:0016413 - O-acetyltransferase activity, GO:0030244 - cellulose biosynthetic process, GO:0045489 - pectin biosynthetic process, GO:0009827 - plant-type cell wall modification, GO:0045492 - xylan biosynthetic process, GO:0005794 - Golgi apparatus		
21464	XOAT3	OsTBL9, TBL9, OsXOAT3	XYLAN O-ACETYLTRANSFERASE 3	trichome birefringence-like 9, xylan O-acetyltransferase 3	XYLAN O-ACETYLTRANSFERASE 3		12	LOC_Os12g01380. MH037017. GO:0071554: cell wall organization or biogenesis.	 Biochemical character,  Vegetative organ - Leaf	Os12g0104700	LOC_Os12g01380.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus	TO:0002681 - leaf curling	
21465	XOAT4	OsTBL10, TBL10, OsXOAT4	XYLAN O-ACETYLTRANSFERASE 4	trichome birefringence-like 10, xylan O-acetyltransferase 4	XYLAN O-ACETYLTRANSFERASE 4		11	LOC_Os11g01370. MH037018. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os11g0104800	LOC_Os11g01370.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21466	XOAT2	OsTBL11, TBL11, OsXOAT2	XYLAN O-ACETYLTRANSFERASE 2	trichome birefringence-like 11, xylan O-acetyltransferase 2	XYLAN O-ACETYLTRANSFERASE 2		5	LOC_Os05g39350. MH037016. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os05g0470000	LOC_Os05g39350.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21467	XOAT1	OsTBL12, TBL12, OsXOAT1	XYLAN O-ACETYLTRANSFERASE 1	trichome birefringence-like 12, xylan O-acetyltransferase 1	XYLAN O-ACETYLTRANSFERASE 1		1	LOC_Os01g61460. MH037015. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os01g0830700	LOC_Os01g61460.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21468	XOAT5	OsTBL13, TBL13, OsXOAT5	XYLAN O-ACETYLTRANSFERASE 5	trichome birefringence-like 13, xylan O-acetyltransferase 5	XYLAN O-ACETYLTRANSFERASE 5		5	LOC_Os05g28630. MH037019. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os05g0354400	LOC_Os05g28630.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity		
21469	XOAT7	OsTBL14, TBL14, OsXOAT7	XYLAN O-ACETYLTRANSFERASE 7	trichome birefringence-like 14, xylan O-acetyltransferase 7	XYLAN O-ACETYLTRANSFERASE 7		7	LOC_Os07g49280. MH037021. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os07g0693600	LOC_Os07g49280.1				GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21470	XOAT6	OsTBL15, TBL15, OsXOAT6	XYLAN O-ACETYLTRANSFERASE 6	trichome birefringence-like 15, xylan O-acetyltransferase 6	XYLAN O-ACETYLTRANSFERASE 6		3	LOC_Os03g18140. MH037020. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os03g0291800	LOC_Os03g18140.1				GO:0005794 - Golgi apparatus, GO:0050826 - response to freezing, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21471	_	OsTBL16, TBL16	_	trichome birefringence-like 16			1	LOC_Os01g42810. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0614300	LOC_Os01g42810.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21472	_	OsTBL17, TBL17	_	trichome birefringence-like 17			5	LOC_Os05g51020. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os05g0587700	LOC_Os05g51020.2				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21473	_	OsTBL18, TBL18	_	trichome birefringence-like 18			3	LOC_Os03g18110. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0290900	LOC_Os03g18110.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21474	_	OsTBL19, TBL19	_	trichome birefringence-like 19			1	LOC_Os01g11810. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0217000	LOC_Os01g11810.2, LOC_Os01g11810.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21475	_	OsTBL20, TBL20	_	trichome birefringence-like 20			6	LOC_Os06g34060. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0531400	LOC_Os06g34060.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21476	_	OsTBL21, TBL21	_	trichome birefringence-like 21			1	LOC_Os01g46350. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0652100	LOC_Os01g46350.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21477	_	OsTBL22, TBL22	_	trichome birefringence-like 22			11	LOC_Os11g05080. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os11g0148200	LOC_Os11g05080.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21478	_	OsTBL23, TBL23	_	trichome birefringence-like 23			12	LOC_Os12g05080. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os12g0145400	LOC_Os12g05080.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21479	_	OsTBL24, TBL24	_	trichome birefringence-like 24			7	LOC_Os07g46230. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os07g0656000	LOC_Os07g46230.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21480	_	OsTBL25, TBL25	_	trichome birefringence-like 25			1	LOC_Os01g30970. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0495200	LOC_Os01g30970.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21481	_	OsTBL26, TBL26	_	trichome birefringence-like 26			1	LOC_Os01g65800. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0880400	LOC_Os01g65800.1				GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21482	_	OsTBL27, TBL27	_	trichome birefringence-like 27			5	LOC_Os05g35190. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os05g0426300	LOC_Os05g35190.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity		
21483	_	OsTBL28, TBL28	_	trichome birefringence-like 28			3	LOC_Os03g19470. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0307700	LOC_Os03g19470.1				GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21484	_	OsTBL29, TBL29	_	trichome birefringence-like 29			6	LOC_Os06g44900. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0659400	LOC_Os06g44900.1				GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21485	_	OsTBL30, TBL30	_	trichome birefringence-like 30			4	LOC_Os04g42900. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os04g0508000	LOC_Os04g42900.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21486	_	OsTBL31, TBL31	_	trichome birefringence-like 31			2	LOC_Os02g53380. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os02g0773732	LOC_Os02g53380.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21487	_	OsTBL32, TBL32	_	trichome birefringence-like 32			6	LOC_Os06g10560. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0207500	LOC_Os06g10560.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21488	_	OsTBL33, TBL33	_	trichome birefringence-like 33			12	LOC_Os12g33194.		Os12g0516800	LOC_Os12g33194.1						
21489	_	OsTBL34, TBL34	_	trichome birefringence-like 34			12	LOC_Os12g36750.		Os12g0554100	LOC_Os12g36750.3, LOC_Os12g36750.2, LOC_Os12g36750.1						
21490	_	OsTBL35, TBL35	_	trichome birefringence-like 35			11	LOC_Os11g13800.		Os11g0241900	LOC_Os11g13800.3, LOC_Os11g13800.2, LOC_Os11g13800.1						
21491	_	OsTBL36, TBL36	_	trichome birefringence-like 36			9	LOC_Os09g23360.		Os09g0397400	LOC_Os09g23360.2, LOC_Os09g23360.1						
21492	_	OsTBL37, TBL37	_	trichome birefringence-like 37			7	LOC_Os07g31550. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os07g0498900	LOC_Os07g31550.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21493	_	OsTBL38, TBL38	_	trichome birefringence-like 38			2	LOC_Os02g02580. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os02g0117900	LOC_Os02g02580.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21494	_	OsTBL39, TBL39	_	trichome birefringence-like 39			1	LOC_Os01g68630. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0914800	LOC_Os01g68630.1				GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21495	_	OsTBL40, TBL40	_	trichome birefringence-like 40			6	LOC_Os06g12870. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0235200	LOC_Os06g12870.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21496	_	OsTBL41, TBL41	_	trichome birefringence-like 41			9	LOC_Os09g20850. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os09g0375300	LOC_Os09g20850.1				GO:0010411 - xyloglucan metabolic process, GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21497	_	OsTBL42, TBL42	_	trichome birefringence-like 42			6	LOC_Os06g12830. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0234800	LOC_Os06g12830.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21498	_	OsTBL43, TBL43	_	trichome birefringence-like 43			6	LOC_Os06g12850. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0235000	LOC_Os06g12850.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21499	_	OsTBL44, TBL44	_	trichome birefringence-like 44			6	LOC_Os06g12860. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0235100	LOC_Os06g12860.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
21500	_	OsTBL45, TBL45	_	trichome birefringence-like 45			6	LOC_Os06g12840. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0234900	LOC_Os06g12840.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21501	_	OsTBL46, TBL46	_	trichome birefringence-like 46			7	LOC_Os07g15230. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os07g0255900	LOC_Os07g15230.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21502	_	OsTBL47, TBL47	_	trichome birefringence-like 47			7	LOC_Os07g15320. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os07g0256700	LOC_Os07g15320.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21503	_	OsTBL48, TBL48	_	trichome birefringence-like 48			5	LOC_Os05g12380. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os05g0214900	LOC_Os05g12380.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21504	_	OsTBL49, TBL49	_	trichome birefringence-like 49			6	LOC_Os06g33330. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0524400	LOC_Os06g33330.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21505	_	OsTBL50, TBL50	_	trichome birefringence-like 50			6	LOC_Os06g12800. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0234300	LOC_Os06g12800.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21506	_	OsTBL51, TBL51	_	trichome birefringence-like 51			6	LOC_Os06g12810. 		Os06g0234400	LOC_Os06g12810.1						
21507	_	OsTBL52, TBL52	_	trichome birefringence-like 52			6	LOC_Os06g12820. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0234600	LOC_Os06g12820.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21508	_	OsTBL53, TBL53	_	trichome birefringence-like 53			4	LOC_Os04g39130. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os04g0465432	LOC_Os04g39130.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21509	_	OsTBL54, TBL54	_	trichome birefringence-like 54			2	LOC_Os02g49650. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os02g0729100	LOC_Os02g49650.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21510	_	OsTBL55, TBL55	_	trichome birefringence-like 55			2	LOC_Os02g49660. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os02g0729200	LOC_Os02g49660.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21511	_	OsTBL57, TBL57	_	trichome birefringence-like 57			1	LOC_Os01g46400. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0652800	LOC_Os01g46400.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21512	_	OsTBL58, TBL58	_	trichome birefringence-like 58			1	LOC_Os01g46410. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0653100	LOC_Os01g46410.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21513	_	OsTBL59, TBL59	_	trichome birefringence-like 59			6	LOC_Os06g16200. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0273200	LOC_Os06g16200.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21514	_	OsTBL61, TBL61	_	trichome birefringence-like 61			6	LOC_Os06g16170. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0272800	LOC_Os06g16170.1, LOC_Os06g16160.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21515	_	OsTBL62, TBL62	_	trichome birefringence-like 62			6	LOC_Os06g15560. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0266000	LOC_Os06g15560.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21516	_	OsTBL63, TBL63	_	trichome birefringence-like 63			11	LOC_Os11g37630. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os11g0586800/Os11g0586825					GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21517	_	OsTBL64, TBL64	_	trichome birefringence-like 64			6	LOC_Os06g16150. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0272700	LOC_Os06g16150.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
21518	_	OsTBL65, TBL65	_	trichome birefringence-like 65			6	LOC_Os06g16160. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0272800/Os06g0272850					GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21519	_	OsTBL66, TBL66	_	trichome birefringence-like 66			6	LOC_Os06g15580. 		Os06g0266133	LOC_Os06g15580.1						
21520	_	OsTBL56, TBL56	_	trichome birefringence-like 56			6	LOC_Os06g16250. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0273700	LOC_Os06g16250.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity		
21521	_	OsTBL60, TBL60	_	trichome birefringence-like 60			6	LOC_Os06g16240. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0273500/Os06g0273700 					GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21522	BPH32	Bph32	BROWN PLANTHOPPER RESISTANCE 32	BPH resistance 32			6	LOC_Os06g03240. a unique short consensus repeat (SCR) domain protein.	 Tolerance and resistance - Insect resistance	Os06g0123200	LOC_Os06g03240.1				GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0020104 - leaf sheath 
21523	TCD10		THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT 10	thermo-sensitive chlorophyll-deficient 10		tcd10	10	LOC_Os10g28600. a Pentatricopeptide Repeat Gene. TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os10g0421800					GO:0009658 - chloroplast organization, GO:0009767 - photosynthetic electron transport chain, GO:0009507 - chloroplast, GO:0009409 - response to cold	TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0002715 - chloroplast development trait, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000303 - cold tolerance	PO:0025034 - leaf 
21525	RLK5 	OsRLK5	_				2	LOC_Os02g13430.	 Tolerance and resistance - Stress tolerance	Os02g0227700	LOC_Os02g13430.1				GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
21526	CRR1		COMPROMISED RESISTANCE TO RUST 1  	compromised resistance to rust 1		crr1	10	non-host resistance (NHR) to Puccinia striiformis f. sp. tritici (Pst) (which is the causal agent of wheat stripe rust). The Crr1 locus was putatively mapped to the long arm of chromosome 10 and was linked to SSR marker RM25761. Composite interval mapping (CIM) placed Crr1 between markers Id14 and RM25792.	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000112 - disease resistance	
21527	LCB2A1	OsLCB2a1, LCB2a1	_	serine palmitoyltransferase subunit LCBa1, serine palmitoyltransferase LCBa1 subunit			1	LOC_Os01g70380. Q5JK39.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os01g0928800	LOC_Os01g70380.1				GO:0009058 - biosynthetic process, GO:0004758 - serine C-palmitoyltransferase activity, GO:0005789 - endoplasmic reticulum membrane, GO:0006665 - sphingolipid metabolic process, GO:0016021 - integral to membrane, GO:0030170 - pyridoxal phosphate binding, GO:0080027 - response to herbivore, GO:0030148 - sphingolipid biosynthetic process, GO:0002213 - defense response to insect, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000424 - brown planthopper resistance, TO:0000236 - crop damage resistance	
21528	LCB2A2	OsLCB2a2, LCB2a2	_	serine palmitoyltransferase subunit LCBa2, serine palmitoyltransferase LCBa2 subunit			1	LOC_Os01g70370. Q8RYL0.	 Biochemical character	Os01g0928700	LOC_Os01g70370.1				GO:0009058 - biosynthetic process, GO:0006665 - sphingolipid metabolic process, GO:0004758 - serine C-palmitoyltransferase activity, GO:0005789 - endoplasmic reticulum membrane, GO:0030170 - pyridoxal phosphate binding, GO:0016021 - integral to membrane		
21529	LCB2A3	OsLCB2a3, LCB2a3	_	serine palmitoyltransferase subunit LCBa3, serine palmitoyltransferase LCBa3 subunit			11	LOC_Os11g31640. Q2R3K3.	 Biochemical character	Os11g0516000	LOC_Os11g31640.1				GO:0009058 - biosynthetic process, GO:0006665 - sphingolipid metabolic process, GO:0005789 - endoplasmic reticulum membrane, GO:0004758 - serine C-palmitoyltransferase activity, GO:0030170 - pyridoxal phosphate binding, GO:0016021 - integral to membrane		
21530	NSCC2	OsNSCC2	NONSELECTIVE CATION CHANNEL 2 	Nonselective Cation Channel 2	NONSELECTIVE CATION CHANNEL 2 		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0435000 	LOC_Os02g23890.2, LOC_Os02g23890.1				GO:0055085 - transmembrane transport, GO:0009651 - response to salt stress, GO:0008565 - protein transporter activity	TO:0006001 - salt tolerance	
21531	_	ARP1	_	auxin repressed protein 1			11	LOC_Os11g44810.		Os11g0671000	LOC_Os11g44810.3, LOC_Os11g44810.2, LOC_Os11g44810.1						
21532	ASPG1 	OsASPG1	ASPARTIC PROTEASE IN GUARD CELL 1  	aspartic protease in guard cell 1	ASPARTIC PROTEASE IN GUARD CELL 1  		2			Os02g0721000					GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
21533	_	EIL1, OsEIL1, MHZ6/OsEIL1, MHZ6	_	ETHYLENE INSENSITIVE3-LIKE1, ETHYLENE INSENSITIVE3-LIKE 1, maohuzi6, maohuzi 6		mhz6-1, mhz6-2, mhz6-3, oseil1	3	LOC_Os03g20790. a rice homolog of ETHYLENE INSENSITIVE3 (EIN3). GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0324300	LOC_Os03g20790.1				GO:0005622 - intracellular, GO:0009723 - response to ethylene stimulus, GO:0031349 - positive regulation of defense response, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0000397 - grain size, TO:0000173 - ethylene sensitivity, TO:0000592 - 1000-dehulled grain weight, TO:0006001 - salt tolerance	
21534	CCR4A	OsCCR4a	CARBON CATABOLITE REPRESSOR 4A 	Carbon catabolite repressor 4a	CARBON CATABOLITE REPRESSOR 4A 		10	LOC_Os10g27230.		Os10g0412100	LOC_Os10g27230.3, LOC_Os10g27230.2, LOC_Os10g27230.1				GO:0000932 - cytoplasmic mRNA processing body, GO:0004519 - endonuclease activity, GO:0004527 - exonuclease activity		
21535	CCR4B	OsCCR4b	CARBON CATABOLITE REPRESSOR 4B	Carbon catabolite repressor 4b	CARBON CATABOLITE REPRESSOR 4B		3	LOC_Os03g07080.		Os03g0166800	LOC_Os03g07080.3, LOC_Os03g07080.2, LOC_Os03g07080.1				GO:0000932 - cytoplasmic mRNA processing body, GO:0004527 - exonuclease activity, GO:0004519 - endonuclease activity		
21536	_	OsNOT1, NOT1	_	NOT1 homolog			10	LOC_Os10g40780.		Os10g0556700	LOC_Os10g40780.3, LOC_Os10g40780.1				GO:0016021 - integral to membrane		
21537	DT11	OsDT11	DROUGHT TOLERANCE 11 	drought tolerance 11			11	a cysteine-rich peptide. LOC_Os11g10590.	 Tolerance and resistance - Stress tolerance	Os11g0211800	LOC_Os11g10590.1				GO:0005576 - extracellular region, GO:0008200 - ion channel inhibitor activity, GO:0009405 - pathogenesis, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000478 - abscisic acid concentration, TO:0000095 - osmotic response sensitivity, TO:0000566 - stomatal frequency	
21538	_	Os2H16, 2H16	_				6	KC710214 (promoter sequence). KC710213.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0316000	LOC_Os06g21110.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21539	RL14	2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24	ROLLING LEAF 14	Rolling-leaf14, Rolling-leaf 14, Rolling leaf 14, 2-oxoglutarate-dependent dioxygenase 24	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 24	rl14, rl14-1, rl14-2	10	LOC_Os10g40960. a 2OG-Fe (II) oxygenase family protein. GO:2000652: regulation of secondary cell wall biogenesis.	 Biochemical character,  Vegetative organ - Leaf	Os10g0558900	LOC_Os10g40960.1				GO:0009834 - secondary cell wall biogenesis, GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity, GO:0006833 - water transport	TO:0001018 - transpiration rate, TO:0000085 - leaf rolling, TO:0002641 - acid detergent fiber	PO:0004006 - mesophyll cell , PO:0005427 - sclerenchyma 
21540	_	OsCPP5, CPP5	_				5	LOC_Os05g43380.	 Other	Os05g0509400	LOC_Os05g43380.2, LOC_Os05g43380.1				GO:0045892 - negative regulation of transcription, DNA-dependent		
21541	_		_	OsNIN-like2, OsNIN-like 2, NIN-like2, NIN-like 2			4	LOC_Os04g41850. Q0JC27.	 Other	Os04g0495800	LOC_Os04g41850.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0045892 - negative regulation of transcription, DNA-dependent		
21542	_		_	OsNIN-like3, OsNIN-like 3, NIN-like3, NIN-like 3			1	LOC_Os01g13540. Q5NB82.	 Other	Os01g0236700	LOC_Os01g13540.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
21543	_		_	OsNIN-like4, OsNIN-like 4, NIN-like4, NIN-like 4			11	LOC_Os11g16290.	 Other	Os11g0264300	LOC_Os11g16290.5, LOC_Os11g16290.4, LOC_Os11g16290.3, LOC_Os11g16290.2, LOC_Os11g16290.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
21544	_	RMP2	_	rice microspore-preferred 2			4	LOC_Os04g47400.	 Biochemical character	Os04g0561900	LOC_Os04g47400.1				GO:0009556 - microsporogenesis, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0009505 - plant-type cell wall, GO:0009506 - plasmodesma, GO:0005507 - copper ion binding		PO:0001007 - pollen development stage 
21545	_	RMP3	_	rice microspore-preferred 3			12	LOC_Os12g41260. GO:0035556: intracellular signal transduction.		Os12g0605900	LOC_Os12g41260.1				GO:0004672 - protein kinase activity, GO:0009556 - microsporogenesis, GO:0005622 - intracellular, GO:0006468 - protein amino acid phosphorylation, GO:0004871 - signal transducer activity, GO:0005524 - ATP binding		PO:0001007 - pollen development stage 
21546	_	RMP4	_	rice microspore-preferred 4											GO:0009556 - microsporogenesis		PO:0001007 - pollen development stage 
21547	_	RMP5	_	rice microspore-preferred 5			12	LOC_Os12g44080.		Os12g0637900	LOC_Os12g44080.1				GO:0009556 - microsporogenesis		PO:0001007 - pollen development stage 
21548	_	RMP6	_	rice microspore-preferred 6			1	LOC_Os01g67350.	 Biochemical character	Os01g0899100	LOC_Os01g67350.1				GO:0008234 - cysteine-type peptidase activity, GO:0009556 - microsporogenesis		PO:0001007 - pollen development stage 
21549	_	RMP8	_	rice microspore-preferred 8			7	LOC_Os07g46950.	 Biochemical character	Os07g0664600	LOC_Os07g46950.4, LOC_Os07g46950.3, LOC_Os07g46950.2				GO:0009556 - microsporogenesis, GO:0019290 - siderophore biosynthetic process, GO:0008667 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity		PO:0001007 - pollen development stage 
21550	_	RMP9	_	rice microspore-preferred 9			3	LOC_Os03g26430.	 Biochemical character	Os03g0381000	LOC_Os03g26430.1				GO:0006006 - glucose metabolic process, GO:0030246 - carbohydrate binding, GO:0004034 - aldose 1-epimerase activity, GO:0009556 - microsporogenesis, GO:0033499 - galactose catabolic process via UDP-galactose		PO:0001007 - pollen development stage 
21551	_	OsPsbR2, PsbR2	_	PSII subunit PsbR2, photosystem II subunit PsbR2			7	a 10 kDa Photosystem II polypeptide.  eukaryotic photosystem II oxygen-evolving complex subunit. LOC_Os07g05365.	 Biochemical character	Os07g0147550	LOC_Os07g05365.1				GO:0016021 - integral to membrane, GO:0009654 - oxygen evolving complex, GO:0015979 - photosynthesis		
21552	CYO1	OsCYO1	_	cotyledon chloroplast biogenesis factor CYO1			9	an ortholog of Arabidopsis thaliana cotyledon chloroplast biogenesis factor AtCYO1. 	 Biochemical character,  Coloration - Chlorophyll	Os09g0458400 	LOC_Os09g28480.2, LOC_Os09g28480.1				GO:0009535 - chloroplast thylakoid membrane, GO:0003756 - protein disulfide isomerase activity, GO:0009658 - chloroplast organization	TO:0000326 - leaf color, TO:0000316 - photosynthetic ability, TO:0000244 - coleoptile color	
21553	PKS1 	OsPKS01, PKS01, OsPKS1	POLYKETIDE SYNTHASE 1	polyketide synthase 1	POLYKETIDE SYNTHASE 1		1	LOC_Os01g41834.	 Biochemical character	Os01g0602600	LOC_Os01g41834.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		
21554	PKS3	OsPKS03, PKS03, OsPKS3	POLYKETIDE SYNTHASE 3	polyketide synthase 3	POLYKETIDE SYNTHASE 3		4	LOC_Os04g23940.	 Biochemical character	Os04g0304600	LOC_Os04g23940.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		
21555	PKS4	OsPKS04, PKS04, OsPKS4	POLYKETIDE SYNTHASE 4	polyketide synthase 4	POLYKETIDE SYNTHASE 4		5	LOC_Os05g12180.	 Biochemical character	Os05g0212500	LOC_Os05g12180.1				GO:0009058 - biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21556	PKS5	OsPKS05, PKS05, OsPKS5	POLYKETIDE SYNTHASE 5	polyketide synthase 5	POLYKETIDE SYNTHASE 5		5	LOC_Os05g12190.	 Biochemical character	Os05g0212600	LOC_Os05g12190.1				GO:0016746 - transferase activity, transferring acyl groups, GO:0008152 - metabolic process		
21557	PKS7	OsPKS07, PKS07, OsPKS7	POLYKETIDE SYNTHASE 7	polyketide synthase 7	POLYKETIDE SYNTHASE 7		5	LOC_Os05g12240.	 Biochemical character	Os05g0213100	LOC_Os05g12240.1				GO:0016746 - transferase activity, transferring acyl groups, GO:0008152 - metabolic process		
21558	PKS9	OsPKS09, PKS09, OsPKS9	POLYKETIDE SYNTHASE 9	polyketide synthase 9	POLYKETIDE SYNTHASE 9		7	LOC_Os07g17010. Q8LIL0. GO:0102452: bisdemethoxycurcumin synthase activity.	 Biochemical character	Os07g0271500	LOC_Os07g17010.1				GO:0042802 - identical protein binding, GO:0009813 - flavonoid biosynthetic process		PO:0025034 - leaf 
21559	PKS10	OsPKS10, OsPKS2, PKS2	POLYKETIDE SYNTHASE 10	polyketide synthase 10, polyketide synthase 2	POLYKETIDE SYNTHASE 10	ospks2, ospks2-1, ospks2-2, ospks2-3	7	LOC_Os07g22850. GO:0090439: tetraketide alpha-pyrone synthase activity. OsPKS2 in Zhu et al. 2017, Zou et al. 2018. GO:0061458: reproductive system development. PO:0030123: panicle inflorescence. the rice orthologous gene of Arabidopsis PKSB/LAP5.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0411300	LOC_Os07g22850.1				GO:0030639 - polyketide biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0080110 - sporopollenin biosynthetic process, GO:0009555 - pollen development, GO:0010208 - pollen wall assembly, GO:0019953 - sexual reproduction, GO:0010584 - pollen exine formation	TO:0000437 - male sterility	PO:0009046 - flower , PO:0001007 - pollen development stage , PO:0009071 - anther wall tapetum , PO:0009066 - anther 
21560	PKS11	OsPKS11	POLYKETIDE SYNTHASE 11	polyketide synthase 11	POLYKETIDE SYNTHASE 11		7	LOC_Os07g31750. 	 Biochemical character	Os07g0500800	LOC_Os07g31750.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity		
21561	PKS13	OsPKS13	POLYKETIDE SYNTHASE 13	polyketide synthase 13	POLYKETIDE SYNTHASE 13		7	LOC_Os07g34140. 	 Biochemical character	Os07g0525500	LOC_Os07g34140.1				GO:0009058 - biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0025034 - leaf 
21562	PKS14	OsPKS14	POLYKETIDE SYNTHASE 14	polyketide synthase 14	POLYKETIDE SYNTHASE 14		7	LOC_Os07g34190. 	 Biochemical character	Os07g0525900	LOC_Os07g34190.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		
21563	PKS15	OsPKS15	POLYKETIDE SYNTHASE 15	polyketide synthase 15	POLYKETIDE SYNTHASE 15		7	LOC_Os07g34260. 	 Biochemical character	Os07g0526400	LOC_Os07g34260.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		
21564	PKS16	OsPKS16	POLYKETIDE SYNTHASE 16	polyketide synthase 16	POLYKETIDE SYNTHASE 16		10	LOC_Os10g07040. 	 Biochemical character	Os10g0158400	LOC_Os10g07040.1				GO:0009058 - biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21565	PKS17	OsPKS17	POLYKETIDE SYNTHASE 17	polyketide synthase 17	POLYKETIDE SYNTHASE 17		10	LOC_Os10g07616. 	 Biochemical character	Os10g0162856	LOC_Os10g07616.1				GO:0016746 - transferase activity, transferring acyl groups, GO:0008152 - metabolic process		
21566	PKS18	OsPKS18	POLYKETIDE SYNTHASE 18	polyketide synthase 18	POLYKETIDE SYNTHASE 18		10	LOC_Os10g08620. 	 Biochemical character	Os10g0167900	LOC_Os10g08620.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		PO:0025034 - leaf , PO:0009046 - flower , PO:0009047 - stem 
21567	PKS19	OsPKS19	POLYKETIDE SYNTHASE 19	polyketide synthase 19	POLYKETIDE SYNTHASE 19		10	LOC_Os10g08710. 	 Biochemical character	Os10g0168500	LOC_Os10g08710.1, LOC_Os10g08680.1				GO:0008152 - metabolic process, GO:0016746 - transferase activity, transferring acyl groups		
21568	PKS20	OsPKS20	POLYKETIDE SYNTHASE 20	polyketide synthase 20	POLYKETIDE SYNTHASE 20		10	LOC_Os10g09860. 	 Biochemical character	Os10g0177300	LOC_Os10g09860.1				GO:0009058 - biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21569	PKS22	OsPKS22	POLYKETIDE SYNTHASE 22	polyketide synthase 22	POLYKETIDE SYNTHASE 22		11	LOC_Os11g32540. 	 Biochemical character	Os11g0529036/Os11g0529100/Os11g0529125					GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
21570	PKS23	OsPKS23	POLYKETIDE SYNTHASE 23	polyketide synthase 23	POLYKETIDE SYNTHASE 23		11	LOC_Os11g32580. 	 Biochemical character	Os11g0529500	LOC_Os11g32580.1				GO:0009058 - biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21571	PKS24	OsPKS24	POLYKETIDE SYNTHASE 24	polyketide synthase 24	POLYKETIDE SYNTHASE 24		11	LOC_Os11g32610. 	 Biochemical character	Os11g0529800	LOC_Os11g32610.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		
21572	PKS25	OsPKS25	POLYKETIDE SYNTHASE 25	polyketide synthase 25	POLYKETIDE SYNTHASE 25		11	LOC_Os11g32620. 	 Biochemical character	Os11g0529900	LOC_Os11g32620.1				GO:0009058 - biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0025034 - leaf , PO:0009047 - stem , PO:0009046 - flower 
21573	PKS27	OsPKS27	POLYKETIDE SYNTHASE 27	polyketide synthase 27	POLYKETIDE SYNTHASE 27		11	LOC_Os11g35930. 	 Biochemical character	Os11g0566800	LOC_Os11g35930.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		
21574	PHR4	OsPHR4, Os-PHR4	PHOSPHATE STARVATION RESPONSE 4	Phosphate Starvation Response4, PHOSPHATE RESPONSE4			6	TO:0020102: phosphate content. LOC_Os06g49040.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os06g0703900 	LOC_Os06g49040.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0055062 - phosphate ion homeostasis, GO:0055081 - anion homeostasis, GO:0048767 - root hair elongation, GO:0005634 - nucleus, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000168 - abiotic stress trait, TO:0002665 - root hair length	PO:0020124 - root stele , PO:0007519 - 5 root hair formation stage , PO:0000034 - vascular system , PO:0000025 - root tip , PO:0000016 - lateral root primordium , PO:0005020 - vascular bundle 
21575	_	LO9-177	_				3	LOC_Os03g43910. a novel OsBUL1-interacting protein. a KxDL motif-containing protein.	 Vegetative organ - Leaf	Os03g0640400	LOC_Os03g43910.1				GO:0009826 - unidimensional cell growth	TO:0000206 - leaf angle, TO:0002687 - cell elongation trait	
21576	_	OsBUL3, BUL3, OsbHLH174, bHLH174	_	BRASSINOSTEROID UPREGULATED 1-LIKE3, BRASSINOSTEROID UPREGULATED 1-LIKE 3, basic helix-loop-helix protein 174			10	LOC_Os10g26410.	 Vegetative organ - Leaf	Os10g0403800	LOC_Os10g26410.1				GO:0009741 - response to brassinosteroid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000206 - leaf angle	
21577	_	LBD12-1	_	LBD family transcription factor 12-1, lateral organ boundaries domain protein 12-1		lbd12-1, lbd12-1a, lbd12-1b	12	LOC_Os12g01550. GO:1902184: negative regulation of shoot apical meristem development.	 Vegetative organ - Shoot apical meristem(SAM)	Os12g0106200	LOC_Os12g01550.1				GO:0048653 - anther development, GO:0040007 - growth	TO:0000215 - stamen anatomy and morphology trait, TO:0000492 - leaf shape, TO:0000515 - relative growth rate, TO:0006020 - shoot apical meristem development, TO:0000214 - anther shape	PO:0001004 - anther development stage 
21578	_	LBD11-1	_	LBD family transcription factor 11-1, lateral organ boundaries domain protein 11-1		lbd11-1, lbd11-1a, lbd11-1b	11	LOC_Os11g01550.		Os11g0106900	LOC_Os11g01550.1						
21579	_	OsCER2, CER2	_	ECERIFERUM2, ECERIFERUM 2		cer2	4	LOC_Os04g52164  (Os04g0611200/Os04g0611267). a homolog of Arabidopsis CER2.	 Biochemical character	Os04g0611200	LOC_Os04g52164.2, LOC_Os04g52164.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0010166 - wax metabolic process, GO:0042761 - very-long-chain fatty acid biosynthetic process, GO:0010025 - wax biosynthetic process		
21580	SGL	OsSGL	STRESS_TOLERANCE AND GRAIN_LENGTH	STRESS_tolerance and GRAIN_LENGTH			2	a putative member of the DUF1645 protein family. GO:2000693: positive regulation of seed maturation.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0134200	LOC_Os02g04130.1				GO:0001558 - regulation of cell growth, GO:0010431 - seed maturation, GO:0009736 - cytokinin mediated signaling, GO:0051781 - positive regulation of cell division, GO:0009628 - response to abiotic stimulus	TO:0002661 - seed maturation, TO:0000167 - cytokinin sensitivity, TO:0000590 - grain weight, TO:0000447 - filled grain number, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000168 - abiotic stress trait	PO:0007632 - seed maturation stage 
21581	PMS1	PMS1T	PHOTOPHERIOD-SENSETIVE GENIC MALE STERILITY 1	photopheriod-sensetive genic male sterility 1, long-noncoding RNA PMS1T		Pms1	7	The nearest predicted genes, LOC_07g12010 and LOC_07g12020, were ~7.7- and 15.0-kb apart, respectively. A full-length cDNA AK242308 on the anti- sense chain was 1,139-bp apart. PMS1T was predicted to be targeted by miR2118. (Fan et al. 2016).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0030422 - production of siRNA involved in RNA interference	TO:0000009 - genic male sterility-photoperiod sensitive	
21582	_	GN2, GN2.1, GN2.2	_	grain number 2, GRAINS NUMBER 2			2	"a newly identified gene from \"Yuanjiang\" common wild rice (O. rufipogon Griff.). A 1094-bp sequence from LOC_Os02g45150 was inserted into the third exon of LOC_Os02g56630, and that the inserted sequence recruited its nearby sequence to generate the chimeric GN2."	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity							TO:0000207 - plant height, TO:0002759 - grain number, TO:0000137 - days to heading	
21583	_		_	Pyridoxal dependant decarboxylase			10	LOC_Os10g26110.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0400500	LOC_Os10g26110.1				GO:0006520 - cellular amino acid metabolic process, GO:0016831 - carboxy-lyase activity, GO:0030170 - pyridoxal phosphate binding, GO:0009628 - response to abiotic stimulus, GO:0009607 - response to biotic stimulus	TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait	
21584	_		_	ketoacyIACP reductase			8		 Biochemical character	Os08g0510400	LOC_Os08g39960.2, LOC_Os08g39960.1				GO:0006629 - lipid metabolic process		
21585	_		_	acyIACP thioesterase			9		 Biochemical character	Os09g0505300	LOC_Os09g32760.3, LOC_Os09g32760.2, LOC_Os09g32760.1				GO:0009507 - chloroplast, GO:0006629 - lipid metabolic process, GO:0016790 - thiolester hydrolase activity, GO:0006633 - fatty acid biosynthetic process		
21586	MTR1	OsMTR1	MICROSPORE AND TAPETUM REGULATOR1	microspore and tapetum regulator 1		mtr1	2	LOC_Os02g28970. Secretory Fasciclin Glycoprotein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0491300	LOC_Os02g28970.1, LOC_Os02g28970.2				GO:0009556 - microsporogenesis, GO:0048658 - tapetal layer development, GO:0005886 - plasma membrane, GO:0048653 - anther development	TO:0000437 - male sterility, TO:0000421 - pollen fertility	PO:0001004 - anther development stage 
21587	_	OsHLM1, HLM1	_					a homolog of Arabidopsis HLM1.							GO:0060548 - negative regulation of cell death		
21588	BPH28	Bph28, Bph28(t)	BROWN PLANTHOPPER RESISTANCE 28				11		 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
21589	BPH29	Bph29	BROWN PLANTHOPPER RESISTANCE 29				6	KC019172 (Oryza sativa indica), KC019173(Oryza rufipogon). LOC_Os06g01860. Q5VS55. a B3 DNA- binding domain-containing protein. a new recessive BPH resistance gene.	 Tolerance and resistance - Insect resistance	Os06g0107800	LOC_Os06g01860.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
21590	MS		MALATE SYNTHASE 	malate synthase	MALATE SYNTHASE 		4	LOC_Os04g40990. Q7XUG1.	 Biochemical character,  Vegetative organ - Leaf	Os04g0486950	LOC_Os04g40990.2, LOC_Os04g40990.1				GO:0010150 - leaf senescence, GO:0004474 - malate synthase activity, GO:0005737 - cytoplasm, GO:0006097 - glyoxylate cycle, GO:0006099 - tricarboxylic acid cycle, GO:0009514 - glyoxysome	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
21591	BMY10 		BETA-AMYLASE 10	beta-amylase 10	BETA-AMYLASE 10		2	LOC_Os02g03690. GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os02g0129600	LOC_Os02g03690.1				GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process		
21592	BMY1		BETA-AMYLASE 1	beta-amylase 1	BETA-AMYLASE 1		7	LOC_Os07g35880. GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os07g0543100	LOC_Os07g35880.1				GO:0000272 - polysaccharide catabolic process, GO:0016161 - beta-amylase activity		
21593	BMY2		BETA-AMYLASE 2	beta-amylase 2	BETA-AMYLASE 2		7	LOC_Os07g35940. GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os07g0543300	LOC_Os07g35940.1				GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process		
21594	DJLM	DJ-LM, OsDRP1E, DRP1E	DONGJIN-LESION MIMIC	dongjin-lesion mimic, dynamin-related protein 1E	DYNAMIN-RELATED PROTEIN 1E	dj-lm	9	LOC_Os09g39960. GO:0090199: regulation of release of cytochrome c from mitochondria.	 Tolerance and resistance - Disease resistance	Os09g0572900	LOC_Os09g39960.1				GO:0005525 - GTP binding, GO:0001836 - release of cytochrome c from mitochondria, GO:0005739 - mitochondrion, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0043069 - negative regulation of programmed cell death, GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity, GO:0008017 - microtubule binding, GO:0005737 - cytoplasm	TO:0000063 - mimic response, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
21595	_	OsDRP1A, DRP1A	_	dynamin-related protein 1A	DYNAMIN-RELATED PROTEIN 1A		5			Os05g0556100	LOC_Os05g48240.4, LOC_Os05g48240.1				GO:0005737 - cytoplasm, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0008017 - microtubule binding, GO:0000266 - mitochondrial fission		
21596	_	OsDRP1B, DRP1B	_	dynamin-related protein 1B	DYNAMIN-RELATED PROTEIN 1B		1			Os01g0681100	LOC_Os01g48900.1				GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding		
21597	_	OsDRP1C, DRP1C, OsDRP1D, DRP1D	_	dynamin-related protein 1C, dynamin-related protein 1D	DYNAMIN-RELATED PROTEIN 1C		10	OsDRP1C (AK061703), OsDRP1D (AK073186).		Os10g0567800	LOC_Os10g41820.2, LOC_Os10g41820.1				GO:0005737 - cytoplasm, GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0008017 - microtubule binding		
21598	_	OsDRP2A, DRP2A	_	dynamin-related protein 2A	DYNAMIN-RELATED PROTEIN 2A		6			Os06g0247800	LOC_Os06g13820.2, LOC_Os06g13820.1				GO:0005737 - cytoplasm, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0000266 - mitochondrial fission, GO:0008017 - microtubule binding		
21599	_	OsDRP2C, DRP2C	_	dynamin-related protein 2C	DYNAMIN-RELATED PROTEIN 2C		8			Os08g0425100	LOC_Os08g32920.1				GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding		
21600	_	OsDRP3A, DRP3A	_	dynamin-related protein 3A	DYNAMIN-RELATED PROTEIN 3A		1			Os01g0920400	LOC_Os01g69130.2, LOC_Os01g69130.1				GO:0008017 - microtubule binding, GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005737 - cytoplasm		
21601	_	OsDRP3B, DRP3B	_	dynamin-related protein 3B	DYNAMIN-RELATED PROTEIN 3B		4			Os04g0381000	LOC_Os04g31190.1				GO:0008017 - microtubule binding, GO:0005737 - cytoplasm, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0000266 - mitochondrial fission		
21602	_	OsDRP3C, DRP3C	_	dynamin-related protein 3C	DYNAMIN-RELATED PROTEIN 3C			AK111167.		AK111167							
21603	_	OsRBX1a, RBX1a	_	RING-BOX1a			2	XP_015625781.1 		Os02g0708300	LOC_Os02g47870.1				GO:0031463 - Cul3-RING ubiquitin ligase complex, GO:0005680 - anaphase-promoting complex, GO:0004842 - ubiquitin-protein ligase activity		
21604	CUL3A	OsCUL3a, CUL3a	CULLIN 3A	Cullin3a, Cullin 3a	CULLIN 3A	oscul3a	2	XP_015626686.1. LOC_Os02g51180.	 Tolerance and resistance - Lesion mimic	Os02g0746000	LOC_Os02g51180.1				GO:0060548 - negative regulation of cell death, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0031625 - ubiquitin protein ligase binding, GO:0000302 - response to reactive oxygen species, GO:0042743 - hydrogen peroxide metabolic process, GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0031348 - negative regulation of defense response	TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content	
21605	ASNASE1  	OsASNase1, ASNase1	ASPARAGINASE 1 	asparaginase1, asparaginase 1	ASPARAGINASE 1 		3		 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0597600 	LOC_Os03g40070.1				GO:0006530 - asparagine catabolic process, GO:0016787 - hydrolase activity		PO:0009051 - spikelet 
21606	ASNASE2	OsASNase2, ASNase2	ASPARAGINASE 2	asparaginase2, asparaginase 2	ASPARAGINASE 2		4		 Biochemical character,  Vegetative organ - Leaf,  Seed,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0650700  	LOC_Os04g55710.1				GO:0016787 - hydrolase activity, GO:0004067 - asparaginase activity, GO:0006530 - asparagine catabolic process, GO:0010150 - leaf senescence, GO:0048316 - seed development	TO:0000249 - leaf senescence, TO:0000653 - seed development trait	PO:0001054 - 4 leaf senescence stage , PO:0001170 - seed development stage , PO:0000074 - parenchyma cell , PO:0020103 - flag leaf , PO:0009051 - spikelet , PO:0000071 - companion cell , PO:0004006 - mesophyll cell , PO:0009001 - fruit , PO:0008007 - nucellar projection , PO:0005020 - vascular bundle 
21607	_	RLS1, LRD43	_	lesion resembling disease 43, rapid leaf senescence 1		lrd43, rls1	2	LOC_Os02g10900. NB-ARM (nucleotide binding site-armadillo domain) protein.	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic	Os02g0203500	LOC_Os02g10900.1				GO:0043067 - regulation of programmed cell death, GO:0043531 - ADP binding, GO:0009416 - response to light stimulus, GO:0009658 - chloroplast organization, GO:0009646 - response to absence of light, GO:0009735 - response to cytokinin stimulus, GO:0010150 - leaf senescence	TO:0000075 - light sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000063 - mimic response, TO:0000249 - leaf senescence, TO:0000326 - leaf color, TO:0000495 - chlorophyll content	PO:0001054 - 4 leaf senescence stage 
21608	_	SPL30	_	spotted leaf 30, SPOTTED LEAF 30		spl30	9	The spl30 gene was mapped between markers XSN2 and XSN4 and the genetic distances of the two markers were 1.7 cM and 0.2 cM, respectively. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Lesion mimic						GO:0042742 - defense response to bacterium, GO:0042743 - hydrogen peroxide metabolic process, GO:0006952 - defense response, GO:0009270 - response to humidity, GO:0009416 - response to light stimulus, GO:0012501 - programmed cell death	TO:0000063 - mimic response, TO:0000075 - light sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000325 - soluble protein content, TO:0000495 - chlorophyll content, TO:0000175 - bacterial blight disease resistance, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
21609	SPL29	UAP1, OsUAP1	SPOTTED LEAF 29	spotted leaf 29, UDP-N-acetylglucosamine pyrophosphorylase 1	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 1 	spl29	8	LOC_Os08g10600. GO:1900055: regulation of leaf senescence. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic	Os08g0206900	LOC_Os08g10600.3, LOC_Os08g10600.2, LOC_Os08g10600.1				GO:0006048 - UDP-N-acetylglucosamine biosynthetic process, GO:0009694 - jasmonic acid metabolic process, GO:0009687 - abscisic acid metabolic process, GO:0031347 - regulation of defense response, GO:0010150 - leaf senescence, GO:0005829 - cytosol, GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity, GO:0042743 - hydrogen peroxide metabolic process, GO:0042742 - defense response to bacterium, GO:0012501 - programmed cell death, GO:0006952 - defense response	TO:0002668 - jasmonic acid content, TO:0002667 - abscisic acid content, TO:0000069 - variegated leaf, TO:0000063 - mimic response, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
21610	UAP2	OsUAP2	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 2	UDP-N-acetylglucosamine pyrophosphorylase 2	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 2		4	NP_001053857.1	 Biochemical character	Os04g0613700	LOC_Os04g52370.2, LOC_Os04g52370.1				GO:0006048 - UDP-N-acetylglucosamine biosynthetic process, GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity, GO:0005829 - cytosol		
21611	SPL31		SPOTTED LEAF 31	spotted leaf 31		spl31	12	Spl31 locus was mapped on chromosome 12 near the centromere between ID104 and ID11 with physical distance of 383 kb and co-segregated with ID105. 	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic						GO:0012501 - programmed cell death, GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence	TO:0000063 - mimic response, TO:0000249 - leaf senescence, TO:0000382 - 1000-seed weight, TO:0000180 - spikelet fertility	PO:0001054 - 4 leaf senescence stage 
21612	SPL30	spl30(t)	SPOTTED LEAF 30	spotted leaf 30, spotted-leaf30		spl30	3	The mutation was controlled by a single recessive gene, tentatively named spl30(t), which co-segregated with RM15380 on chromosome 3, and was delimited to a 94 kb region between RM15380 and RM15383.	 Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Stress tolerance						GO:0009408 - response to heat, GO:0012501 - programmed cell death, GO:0015994 - chlorophyll metabolic process, GO:0009416 - response to light stimulus	TO:0000063 - mimic response, TO:0000075 - light sensitivity, TO:0000495 - chlorophyll content, TO:0000259 - heat tolerance	
21613	LAC6	OsLAC6	LACCASE 6	laccase 6	LACCASE 6		1	Q5N9W4. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0843800 	LOC_Os01g62600.1				GO:0046274 - lignin catabolic process, GO:0009414 - response to water deprivation, GO:0005739 - mitochondrion, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0048046 - apoplast, GO:0005507 - copper ion binding	TO:0000276 - drought tolerance	
21614	LAC7	OsLAC7	LACCASE 7	laccase 7	LACCASE 7		1	Q5N7A3. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0850550  	LOC_Os01g63180.1				GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0005507 - copper ion binding, GO:0009651 - response to salt stress, GO:0048046 - apoplast, GO:0046274 - lignin catabolic process	TO:0006001 - salt tolerance	
21615	LAC13	OsLAC13	LACCASE 13	laccase 13	LACCASE 13		5	Q0DHL5. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os05g0458300   	LOC_Os05g38390.1				GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions		
21617	LAC16	OsLAC16	LACCASE 16	laccase 16	LACCASE 16		7	Q69L99. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os07g0101000     	LOC_Os07g01110.1				GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process		
21618	LAC17	OsLAC17	LACCASE 17	laccase 17	LACCASE 17		10	Q339K6. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0346300      	LOC_Os10g20610.1				GO:0010038 - response to metal ion, GO:0046685 - response to arsenic, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0046686 - response to cadmium ion, GO:0005507 - copper ion binding	TO:0000034 - chromium sensitivity	
21619	LAC22	OsLAC22	LACCASE 22	laccase 22	LACCASE 22		11	Q53LU4. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os11g0264000      	LOC_Os11g16260.1				GO:0048046 - apoplast, GO:0046274 - lignin catabolic process, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0005507 - copper ion binding		
21620	LAC23	OsLAC23	LACCASE 23	laccase 23	LACCASE 23		11	Q2R0L2. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0641500      	LOC_Os11g42200.1				GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046688 - response to copper ion, GO:0046685 - response to arsenic, GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion, GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process	TO:0000034 - chromium sensitivity, TO:0000021 - copper sensitivity	
21621	LAC24	OsLAC24	LACCASE 24	laccase 24	LACCASE 24		11	Q2R0L0. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0641800      	LOC_Os11g42220.1				GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0010288 - response to lead ion, GO:0048046 - apoplast, GO:0046686 - response to cadmium ion, GO:0046274 - lignin catabolic process, GO:0010038 - response to metal ion, GO:0005507 - copper ion binding	TO:0000034 - chromium sensitivity	
21622	LAC28	OsLAC28	LACCASE 28	laccase 28	LACCASE 28		12	GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0257600      	LOC_Os12g15530.1				GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	PO:0009089 - endosperm 
21623	LAC29	OsLAC29	LACCASE 29	laccase 29	LACCASE 29		12	Q2QUN2. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0258700      	LOC_Os12g15680.1				GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046274 - lignin catabolic process, GO:0046688 - response to copper ion, GO:0009651 - response to salt stress, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic	TO:0000021 - copper sensitivity, TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity	PO:0009089 - endosperm 
21624	LAC30	OsLAC30	LACCASE 30	laccase 30	LACCASE 30		12	Q0IP28. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os12g0259800      	LOC_Os12g15920.1				GO:0048046 - apoplast, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process		
21625	LAC20	OsLAC20	LACCASE 20	laccase 20	LACCASE 20		11	LOC_Os11g01730.	 Biochemical character	Os11g0108650 	LOC_Os11g01730.1				GO:0005507 - copper ion binding		
21626	_	APIP12	_	AvrPiz-t Interacting Protein 12			1	nucleoporin protein Nup98 Homolog. LOC_Os01g28690. GO:0044614: nuclear pore cytoplasmic filaments.	 Tolerance and resistance - Disease resistance	Os01g0383900	LOC_Os01g28690.2, LOC_Os01g28690.1				GO:0003723 - RNA binding, GO:0034398 - telomere tethering at nuclear periphery, GO:0017056 - structural constituent of nuclear pore, GO:0006606 - protein import into nucleus, GO:0008139 - nuclear localization sequence binding, GO:0005487 - nucleocytoplasmic transporter activity, GO:0006405 - RNA export from nucleus, GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
21627	_	OsIDD4, IDD4, SID1	_	indeterminate domain 4, Suppressor of rid1	_	sid1-D	2	LOC_Os02g45054.	 Reproductive organ - Heading date	Os02g0672100	LOC_Os02g45054.4, LOC_Os02g45054.3, LOC_Os02g45054.2, LOC_Os02g45054.1				GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0003676 - nucleic acid binding, GO:0046872 - metal ion binding, GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time, TO:0000137 - days to heading	
21628	AAO3	OsAAO3	ASCORBATE OXIDASE 3	ascorbate oxidase 3	ASCORBATE OXIDASE 3		7	LOC_Os07g02810.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0119400	LOC_Os07g02810.1				GO:0009505 - plant-type cell wall, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0009651 - response to salt stress, GO:0009506 - plasmodesma	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0009006 - shoot system 
21629	_	AtpB	_	beta subunit of ATP synthase			1	LOC_Os01g49190.	 Tolerance and resistance - Stress tolerance	Os01g0685800	LOC_Os01g49190.1				GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0009409 - response to cold, GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), GO:0005524 - ATP binding, GO:0015986 - ATP synthesis coupled proton transport	TO:0000303 - cold tolerance, TO:0000180 - spikelet fertility	
21630	_	OsAKR, AKR	_	aldo-keto reductase	_		4	Q7XQ45.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0339400	LOC_Os04g27060.1				GO:0051775 - response to redox state, GO:0016491 - oxidoreductase activity		
21631	_	STS22	_	Imidazoleglycerol-phosphate dehydratase			4		 Biochemical character	Os04g0617800	LOC_Os04g52710.3, LOC_Os04g52710.2, LOC_Os04g52710.1				GO:0004424 - imidazoleglycerol-phosphate dehydratase activity, GO:0000105 - histidine biosynthetic process		
21632	_	STS90	_	Phytoene dehydrogenase			12		 Biochemical character	Os12g0631800	LOC_Os12g43590.1				GO:0005507 - copper ion binding, GO:0016491 - oxidoreductase activity, GO:0005739 - mitochondrion		
21634	SCS1	OsSCS1	SNRK2-CALCIUM SENSOR 1	SnRK2-calcium sensor 1	SNRK2-CALCIUM SENSOR 1		3	LOC_Os03g14590. calcium-binding elongation factor (EF) hand family protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0250000	LOC_Os03g14590.3, LOC_Os03g14590.2, LOC_Os03g14590.1				GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus, GO:0005509 - calcium ion binding, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0051607 - defense response to virus, GO:0009414 - response to water deprivation	TO:0000148 - viral disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000020 - black streak dwarf virus resistance	
21635	DG1		DEFECTIVE GLUME 1 	defective glume 1		dg1	8	The DG1 gene was mapped to chromosome 8 between InDel markers In13 and In14, an approximately 31-kb physical distance in Nipponbare. In the 31-kb target region, there were eight predicted opening reading frames. TO:0006064: rolled leaf.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn						GO:0009742 - brassinosteroid mediated signaling, GO:0048437 - floral organ development, GO:0009908 - flower development, GO:0009741 - response to brassinosteroid stimulus, GO:0008283 - cell proliferation, GO:0001558 - regulation of cell growth	TO:0000402 - grain width, TO:0000207 - plant height, TO:0002637 - leaf size, TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0002601 - stamen size, TO:0000215 - stamen anatomy and morphology trait, TO:0006012 - carpel anatomy and morphology trait, TO:0000162 - seed quality, TO:0000397 - grain size, TO:0000622 - flower development trait, TO:0006022 - floral organ development trait, TO:0000396 - grain yield	PO:0007615 - flower development stage , PO:0007600 - floral organ differentiation stage 
21636	_		_				4	LOC_Os04g52290.	 Tolerance and resistance - Stress tolerance	Os04g0612800	LOC_Os04g52290.1				GO:0004519 - endonuclease activity, GO:0003723 - RNA binding, GO:0009451 - RNA modification, GO:0005739 - mitochondrion, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21637	_		_				7	LOC_Os07g02710.	 Tolerance and resistance - Stress tolerance	Os07g0118300	LOC_Os07g02710.1				GO:0005774 - vacuolar membrane, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
21638	_		_				2	LOC_Os02g04650.	 Tolerance and resistance - Stress tolerance	Os02g0139100	LOC_Os02g04650.1				GO:0001671 - ATPase activator activity, GO:0051087 - chaperone binding		
21639	YSS1		YOUNG SEEDLING STRIPE1	Young Seedling Stripe1, Young Seedling Stripe 1		yss1	4	a chloroplast nucleoid-associated protein. LOC_Os04g59570. TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os04g0692200	LOC_Os04g59570.2, LOC_Os04g59570.1				GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0009266 - response to temperature stimulus	TO:0002715 - chloroplast development trait, TO:0000303 - cold tolerance, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000069 - variegated leaf, TO:0000075 - light sensitivity, TO:0000432 - temperature response trait	
21641	DHHC1	OsDHHC1, OsPAT15, PAT15	DHHC-TYPE ZINC FINGER PROTEIN 1	DHHC-type zinc finger protein 1, Protein S-acyltransferase 15	DHHC-TYPE ZINC FINGER PROTEIN 1		2	KX783131. OsDHHC1 was a spliced variant of Os02g0819100, whose CDS contained 672 bp with a 147 bp sequence (position 113-289) remove from Os02g0819100.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0819100 	LOC_Os02g57370.1				GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0009416 - response to light stimulus, GO:0016021 - integral to membrane	TO:0000346 - tiller number, TO:0000265 - light quality sensitivity, TO:0000396 - grain yield	PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0007073 - 2 formation of axillary shoot stage 
21642	AK1	OsAK1	ADENYLATE KINASE 1	adenylate kinase 1	ADENYLATE KINASE 1		8	LOC_Os08g01770. Q6ZC69. GO:2000505: regulation of energy homeostasis. TO:0006060: leaf chlorosis. the closest homolog of Arabidopsis ADENOSINE MONO- PHOSPHATE KINASE 2 (AMK2).	 Biochemical character,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os08g0109300	LOC_Os08g01770.2, LOC_Os08g01770.1				GO:0004017 - adenylate kinase activity, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0010109 - regulation of photosynthesis, GO:0009658 - chloroplast organization, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding	TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000447 - filled grain number, TO:0000201 - panicle color, TO:0000371 - yield trait, TO:0002724 - leaf sheath color, TO:0000069 - variegated leaf, TO:0000326 - leaf color, TO:0000316 - photosynthetic ability	
21643	PDHE1A	OsPDHE1-A	PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-1 	pyruvate dehydrogenase E1 component subunit alpha-1	PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-1 		2	LOC_Os02g50620. Q6Z5N4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0739600	LOC_Os02g50620.1				GO:0009409 - response to cold, GO:0005759 - mitochondrial matrix, GO:0006096 - glycolysis, GO:0006086 - acetyl-CoA biosynthetic process from pyruvate, GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity	TO:0000303 - cold tolerance	
21644	_	LRR-RLK	_	leucine-rich repeat receptor-like kinase			1	LOC_Os01g49920.	 Tolerance and resistance - Stress tolerance	Os01g0694100	LOC_Os01g49920.1				GO:0006950 - response to stress	TO:0000168 - abiotic stress trait	
21645	BETACA2	OsbetaCA2, betaCA2	BETA-CARBONIC ANHYDRASE 2 	beta-carbonic anhydrase 2	BETA-CARBONIC ANHYDRASE 2 		9	LOC_Os09g28910.	 Biochemical character	Os09g0464000	LOC_Os09g28910.5, LOC_Os09g28910.4, LOC_Os09g28910.3, LOC_Os09g28910.2, LOC_Os09g28910.1				GO:0004089 - carbonate dehydratase activity, GO:0008270 - zinc ion binding, GO:0015976 - carbon utilization		
21646	ALPHACA1	OsalphaCA1, alphaCA1	ALPHA-CARBONIC ANHYDRASE 1 	alpha-carbonic anhydrase 1	ALPHA-CARBONIC ANHYDRASE 1 		2	LOC_Os02g33030.	 Biochemical character	Os02g0533300	LOC_Os02g33030.1				GO:0008270 - zinc ion binding, GO:0004089 - carbonate dehydratase activity, GO:0006730 - one-carbon metabolic process		
21647	ALPHACA2	OsalphaCA2, alphaCA2	ALPHA-CARBONIC ANHYDRASE 2	alpha-carbonic anhydrase 2	ALPHA-CARBONIC ANHYDRASE 2		4	LOC_Os04g33660.	 Biochemical character	Os04g0412500	LOC_Os04g33660.2, LOC_Os04g33660.1				GO:0006730 - one-carbon metabolic process, GO:0008270 - zinc ion binding, GO:0004089 - carbonate dehydratase activity		
21648	ALPHACA4	OsalphaCA4, alphaCA4	ALPHA-CARBONIC ANHYDRASE 4	alpha-carbonic anhydrase 4	ALPHA-CARBONIC ANHYDRASE 4		8	LOC_Os08g32780.	 Biochemical character	Os08g0423600	LOC_Os08g32780.1				GO:0008270 - zinc ion binding, GO:0004089 - carbonate dehydratase activity, GO:0006730 - one-carbon metabolic process		
21649	ALPHACA5	OsalphaCA5, alphaCA5	ALPHA-CARBONIC ANHYDRASE 5	alpha-carbonic anhydrase 5	ALPHA-CARBONIC ANHYDRASE 5		8	LOC_Os08g32840.	 Biochemical character	Os08g0424100	LOC_Os08g32840.1				GO:0004089 - carbonate dehydratase activity, GO:0008270 - zinc ion binding, GO:0006730 - one-carbon metabolic process		
21650	ALPHACA6	OsalphaCA6, alphaCA6	ALPHA-CARBONIC ANHYDRASE 6	alpha-carbonic anhydrase 6	ALPHA-CARBONIC ANHYDRASE 6		8	LOC_Os08g36630.	 Biochemical character	Os08g0470200	LOC_Os08g36630.1						
21651	ALPHACA7	OsalphaCA7, alphaCA7	ALPHA-CARBONIC ANHYDRASE 7	alpha-carbonic anhydrase 7	ALPHA-CARBONIC ANHYDRASE 7		8	LOC_Os08g36680.	 Biochemical character	Os08g0470700	LOC_Os08g36680.2, LOC_Os08g36680.1				GO:0006730 - one-carbon metabolic process, GO:0004089 - carbonate dehydratase activity, GO:0008270 - zinc ion binding		
21652	ALPHACA8	OsalphaCA8, alphaCA8	ALPHA-CARBONIC ANHYDRASE 8	alpha-carbonic anhydrase 8	ALPHA-CARBONIC ANHYDRASE 8		9	LOC_Os09g28130.	 Biochemical character	Os09g0454400	LOC_Os09g28130.1						
21653	ALPHACA9	OsalphaCA9, alphaCA9	ALPHA-CARBONIC ANHYDRASE 9	alpha-carbonic anhydrase 9	ALPHA-CARBONIC ANHYDRASE 9		9	LOC_Os09g28150.	 Biochemical character	Os09g0454500	LOC_Os09g28150.1				GO:0004089 - carbonate dehydratase activity, GO:0006730 - one-carbon metabolic process, GO:0008270 - zinc ion binding		
21654	ALPHACA11	OsalphaCA11, alphaCA11	ALPHA-CARBONIC ANHYDRASE 11	alpha-carbonic anhydrase 11	ALPHA-CARBONIC ANHYDRASE 11		12	LOC_Os12g05730.	 Biochemical character	Os12g0153500	LOC_Os12g05730.1				GO:0004089 - carbonate dehydratase activity, GO:0006730 - one-carbon metabolic process, GO:0008270 - zinc ion binding		
21655	PLC2	OsPLC2	PHOSPHOLIPASE C2 	phospholipase C2	PHOSPHOLIPASE C2 		3	LOC_Os03g18010.1. GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0289300	LOC_Os03g18010.1, LOC_Os03g18000.1				GO:0004435 - phosphoinositide phospholipase C activity, GO:0010229 - inflorescence development, GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0016042 - lipid catabolic process	TO:0000095 - osmotic response sensitivity, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	PO:0001083 - inflorescence development stage 
21656	PLC3	OsPLC3	PHOSPHOLIPASE C3	phospholipase C3	PHOSPHOLIPASE C3		12	LOC_Os12g37560.1. CT835563. GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0562400	LOC_Os12g37560.2, LOC_Os12g37560.1				GO:0004435 - phosphoinositide phospholipase C activity, GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0016042 - lipid catabolic process, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0010229 - inflorescence development	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
21657	PLC4	OsPLC4	PHOSPHOLIPASE C4	phospholipase C4, Phosphatidylinositol-hydrolyzing phospholipase C4	PHOSPHOLIPASE C4	plc4-1, plc4-2	5	LOC_Os05g03610.1. GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0127200	LOC_Os05g03610.1				GO:0048016 - inositol phosphate-mediated signaling, GO:0016042 - lipid catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0005622 - intracellular, GO:0004871 - signal transducer activity, GO:0004435 - phosphoinositide phospholipase C activity, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0050848 - regulation of calcium-mediated signaling	TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21658	_	qCTS-9	_	cold tolerance at seedling stage (QTL)-9			9	Os09g0410300 is the functional gene of a cold-tolerant QTL qCTS-9. 	 Tolerance and resistance - Stress tolerance	Os09g0410300 	LOC_Os09g24440.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
21659	ADC3	OsADC3	ARGININE DECARBOXYLASE 3	Arginine decarboxylase 3	ARGININE DECARBOXYLASE 3		8	LOC_Os08g33620.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0433000 	LOC_Os08g33620.1				GO:0008792 - arginine decarboxylase activity, GO:0006527 - arginine catabolic process, GO:0006596 - polyamine biosynthetic process, GO:0008295 - spermidine biosynthetic process		
21660	ODC2	OsODC2	ORNITHINE DECARBOXYLASE 2	ornithine decarboxylase 2	ORNITHINE DECARBOXYLASE 2		4	LOC_Os04g04980.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0136500	LOC_Os04g04980.1				GO:0005737 - cytoplasm, GO:0006596 - polyamine biosynthetic process, GO:0033387 - putrescine biosynthetic process from ornithine, GO:0009651 - response to salt stress, GO:0003824 - catalytic activity, GO:0004586 - ornithine decarboxylase activity	TO:0006001 - salt tolerance	
21661	ODC4	OsODC4	ORNITHINE DECARBOXYLASE 4	ornithine decarboxylase 4	ORNITHINE DECARBOXYLASE 4		3	LOC_Os03g45230.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0654900	LOC_Os03g45230.1				GO:0006596 - polyamine biosynthetic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21662	AIH	OsAIH	AGMATINE IMINOHYDROLASE	Agmatine iminohydrolase	AGMATINE IMINOHYDROLASE		4	LOC_Os04g39210.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0466600	LOC_Os04g39210.1				GO:0009651 - response to salt stress, GO:0009446 - putrescine biosynthetic process, GO:0006596 - polyamine biosynthetic process, GO:0004668 - protein-arginine deiminase activity, GO:0047632 - agmatine deiminase activity	TO:0006001 - salt tolerance	
21663	CPA2	OsCPA2	CARBAMOYLPUTRESCINE AMIDASE 2	N-carbamoyl-Put amidohydrolase 2	CARBAMOYLPUTRESCINE AMIDASE 2		3	LOC_Os03g07910.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0175600	LOC_Os03g07910.1				GO:0006108 - malate metabolic process, GO:0009651 - response to salt stress, GO:0050152 - omega-amidase activity, GO:0009570 - chloroplast stroma, GO:0008270 - zinc ion binding, GO:0006807 - nitrogen compound metabolic process, GO:0006596 - polyamine biosynthetic process, GO:0006107 - oxaloacetate metabolic process, GO:0005829 - cytosol	TO:0006001 - salt tolerance	
21664	CPA3	OsCPA3	CARBAMOYLPUTRESCINE AMIDASE 3	N-carbamoyl-Put amidohydrolase 3	CARBAMOYLPUTRESCINE AMIDASE 3		6	LOC_Os06g10420.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0206000	LOC_Os06g10420.1				GO:0006596 - polyamine biosynthetic process, GO:0009651 - response to salt stress, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, GO:0006807 - nitrogen compound metabolic process	TO:0006001 - salt tolerance	
21665	CPA4	OsCPA4	CARBAMOYLPUTRESCINE AMIDASE 4	N-carbamoyl-Put amidohydrolase 4	CARBAMOYLPUTRESCINE AMIDASE 4		12	LOC_Os12g31830.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0502500	LOC_Os12g31830.1				GO:0006807 - nitrogen compound metabolic process, GO:0009536 - plastid, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, GO:0006596 - polyamine biosynthetic process	TO:0006001 - salt tolerance	
21666	SAMDC3	OsSAMDC3	S-ADENOSYLMETHIONINE DECARBOXYLASE 3 	S-adenosylmethionine decarboxylase 3	S-ADENOSYLMETHIONINE DECARBOXYLASE 3 		5	LOC_Os05g04990. GO:0099402: plant organ development.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0141800	LOC_Os05g04990.1				GO:0009651 - response to salt stress, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0005829 - cytosol, GO:0006557 - S-adenosylmethioninamine biosynthetic process, GO:0006596 - polyamine biosynthetic process, GO:0006597 - spermine biosynthetic process, GO:0008295 - spermidine biosynthetic process	TO:0006001 - salt tolerance	
21667	SAMDC5	OsSAMDC5	S-ADENOSYLMETHIONINE DECARBOXYLASE 5	S-adenosylmethionine decarboxylase 5	S-ADENOSYLMETHIONINE DECARBOXYLASE 5		9	LOC_Os09g24600.	 Biochemical character,  Tolerance and resistance - Stress tolerance		LOC_Os09g24600				GO:0005829 - cytosol, GO:0008295 - spermidine biosynthetic process, GO:0006597 - spermine biosynthetic process, GO:0009651 - response to salt stress, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0006596 - polyamine biosynthetic process	TO:0006001 - salt tolerance	
21668	SAMDC6	OsSAMDC6	S-ADENOSYLMETHIONINE DECARBOXYLASE 6	S-adenosylmethionine decarboxylase 6	S-ADENOSYLMETHIONINE DECARBOXYLASE 6		5	LOC_Os05g13480.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0221800	LOC_Os05g13480.1				GO:0008295 - spermidine biosynthetic process, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0006596 - polyamine biosynthetic process, GO:0006597 - spermine biosynthetic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21669	SPMS2	OsSPMS2	SPERMINE SYNTHASE 2	spermine synthase 2, spermidine/spermine synthase 2	SPERMINE SYNTHASE 2		2	LOC_Os02g15550.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0254700	LOC_Os02g15550.3, LOC_Os02g15550.2, LOC_Os02g15550.1				GO:0009651 - response to salt stress, GO:0004766 - spermidine synthase activity, GO:0006596 - polyamine biosynthetic process, GO:0016740 - transferase activity	TO:0006001 - salt tolerance	
21670	_	OsACL5, ACL5	_	Acaulis5, Acaulis 5			2	LOC_Os02g14190.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0237100	LOC_Os02g14190.1				GO:0048759 - vessel member cell differentiation, GO:0004766 - spermidine synthase activity, GO:0006596 - polyamine biosynthetic process, GO:0009651 - response to salt stress, GO:0009926 - auxin polar transport, GO:0010487 - thermospermine synthase activity	TO:0006001 - salt tolerance	
21671	DAO1 	OsDAO1, OsCuDAO1, CuDAO1	DIAMINE OXIDASE 1 	diamine oxidase 1, Copper-containing diamine oxidase 1	DIAMINE OXIDASE 1 		6	LOC_Os06g23114.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0338200	LOC_Os06g23114.1				GO:0006598 - polyamine catabolic process, GO:0048038 - quinone binding, GO:0009308 - amine metabolic process, GO:0009651 - response to salt stress, GO:0008131 - amine oxidase activity, GO:0005507 - copper ion binding	TO:0006001 - salt tolerance	
21672	DAO2	OsDAO2, OsCuDAO2, CuDAO2	DIAMINE OXIDASE 2	diamine oxidase 2, Copper-containing diamine oxidase 2	DIAMINE OXIDASE 2		4	LOC_Os04g20164.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0269600	LOC_Os04g20164.2, LOC_Os04g20164.1				GO:0009651 - response to salt stress, GO:0009308 - amine metabolic process, GO:0008131 - amine oxidase activity, GO:0006598 - polyamine catabolic process, GO:0005507 - copper ion binding, GO:0048038 - quinone binding	TO:0006001 - salt tolerance	
21673	DAO3	OsDAO3, OsCuDAO3, CuDAO3	DIAMINE OXIDASE 3	diamine oxidase 3, Copper-containing diamine oxidase 3	DIAMINE OXIDASE 3		4	LOC_Os04g04950.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0136200	LOC_Os04g04950.1				GO:0009651 - response to salt stress, GO:0006598 - polyamine catabolic process, GO:0005507 - copper ion binding, GO:0008131 - amine oxidase activity, GO:0009308 - amine metabolic process, GO:0048038 - quinone binding	TO:0006001 - salt tolerance	
21674	DAO4	OsDAO4, OsCuDAO4, CuDAO4	DIAMINE OXIDASE 4	diamine oxidase 4, Copper-containing diamine oxidase 4	DIAMINE OXIDASE 4		4	LOC_Os04g40040.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0476100	LOC_Os04g40040.1				GO:0008131 - amine oxidase activity, GO:0006598 - polyamine catabolic process, GO:0005507 - copper ion binding, GO:0048038 - quinone binding, GO:0009651 - response to salt stress, GO:0009308 - amine metabolic process	TO:0006001 - salt tolerance	
21675	DAO5	OsDAO5, OsCuDAO5, CuDAO5	DIAMINE OXIDASE 5	diamine oxidase 5, Copper-containing diamine oxidase 5	DIAMINE OXIDASE 5		2	LOC_Os02g38010.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0593100	LOC_Os02g38010.1, LOC_Os02g37990.1				GO:0005507 - copper ion binding, GO:0009651 - response to salt stress, GO:0048038 - quinone binding, GO:0009308 - amine metabolic process, GO:0008131 - amine oxidase activity, GO:0006598 - polyamine catabolic process	TO:0006001 - salt tolerance	
21676	_	OsBIANK1, BIANK1, XB25	_	XA21 binding protein 25			9	LOC_Os09g33810.	 Tolerance and resistance - Disease resistance	Os09g0513000	LOC_Os09g33810.5, LOC_Os09g33810.4, LOC_Os09g33810.3, LOC_Os09g33810.2, LOC_Os09g33810.1				GO:0045036 - protein targeting to chloroplast, GO:0031359 - integral to chloroplast outer membrane, GO:0006952 - defense response, GO:0030941 - chloroplast targeting sequence binding	TO:0000112 - disease resistance	
21677	_	Xbos251, XBOS251	_				3	LOC_Os03g63480. Xb25 paralog.		Os03g0851700	LOC_Os03g63480.1				GO:0031359 - integral to chloroplast outer membrane, GO:0045036 - protein targeting to chloroplast, GO:0030941 - chloroplast targeting sequence binding		
21678	_	Xbos252, XBOS252	_				8	LOC_Os08g42690. Xb25 paralog.		Os08g0539600	LOC_Os08g42690.1				GO:0030941 - chloroplast targeting sequence binding, GO:0045036 - protein targeting to chloroplast, GO:0031359 - integral to chloroplast outer membrane		
21679	_	OsBRI1	_				10	Q7G768.		Os10g0114400	LOC_Os10g02500.1				GO:0016021 - integral to membrane, GO:0010305 - leaf vascular tissue pattern formation, GO:0009742 - brassinosteroid mediated signaling, GO:0009734 - auxin mediated signaling pathway, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0010233 - phloem transport		
21680	_	OsCLVATA, CLVATA	_				2			Os02g0111800	LOC_Os02g02140.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
21681	SPL33	LMM5.1, SPL33/LMM5.1	SPOTTED LEAF 33	spotted leaf 33, Lesion mimic mutant 5.1		spl33, lmm5.1	1	LOC_Os01g02720. a eukaryotic translation elongation factor 1 alpha (eEF1A)-like protein.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic	Os01g0116600	LOC_Os01g02720.2, LOC_Os01g02720.1				GO:0031348 - negative regulation of defense response, GO:0050832 - defense response to fungus, GO:0043069 - negative regulation of programmed cell death, GO:0005783 - endoplasmic reticulum, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0003746 - translation elongation factor activity, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0042742 - defense response to bacterium, GO:0012501 - programmed cell death, GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization	TO:0000175 - bacterial blight disease resistance, TO:0000063 - mimic response, TO:0000249 - leaf senescence, TO:0000605 - hydrogen peroxide content, TO:0006007 - polysaccharide content, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000074 - blast disease	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
21682	_		_	Acyl-coenzyme A dehydrogenase, mitochondrial precursor			5	LOC_Os05g03480.2. Q75IM9.	 Biochemical character	Os05g0125500	LOC_Os05g03480.5, LOC_Os05g03480.4, LOC_Os05g03480.2				GO:0050660 - FAD binding, GO:0005524 - ATP binding, GO:0008470 - isovaleryl-CoA dehydrogenase activity, GO:0006552 - leucine catabolic process, GO:0005759 - mitochondrial matrix		
21683	_		_	Phosphoenolpyruvate carboxykinase			3	LOC_Os03g15050.1 	 Biochemical character	Os03g0255500	LOC_Os03g15050.4, LOC_Os03g15050.2, LOC_Os03g15050.1				GO:0006094 - gluconeogenesis, GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity, GO:0005524 - ATP binding, GO:0016301 - kinase activity, GO:0005829 - cytosol		
21684	_	CK1_CaseinKinase_1a.3	_				1	LOC_Os01g56580.1. 	 Biochemical character	Os01g0772600	LOC_Os01g56580.2, LOC_Os01g56580.1				GO:0005634 - nucleus, GO:0004674 - protein serine/threonine kinase activity, GO:0018105 - peptidyl-serine phosphorylation, GO:0005737 - cytoplasm, GO:0008360 - regulation of cell shape, GO:0005524 - ATP binding		
21685	_		_	Tetratricopeptide-like helical			1	LOC_Os01g29430.2. GO:0080156: mitochondrial mRNA modification.		Os01g0390600	LOC_Os01g29430.2, LOC_Os01g29430.1				GO:0003723 - RNA binding, GO:0005739 - mitochondrion, GO:0004519 - endonuclease activity		
21686	_	OsZFP, ZFP	_	zinc finger protein			1	a C2HC-type zinc finger protein. GO:2000023: regulation of lateral root development.	 Vegetative organ - Root	Os01g0252900	LOC_Os01g14920.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0048527 - lateral root development, GO:0003676 - nucleic acid binding	TO:0000163 - auxin sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage 
21687	_	OsDW1-01g	_				1	LOC_Os01g01390. one of the two sorghum Dw1 orthologs in rice.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits	Os01g0103800	LOC_Os01g01390.5, LOC_Os01g01390.4, LOC_Os01g01390.3, LOC_Os01g01390.2, LOC_Os01g01390.1					TO:0000206 - leaf angle, TO:0000484 - seed shape, TO:0000207 - plant height, TO:0000146 - seed length	
21688	_	OsDW1-03g	_				3	LOC_Os03g16400. one of the two sorghum Dw1 orthologs in rice.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits	Os03g0270700	LOC_Os03g16400.1					TO:0000146 - seed length, TO:0000206 - leaf angle, TO:0000207 - plant height, TO:0000484 - seed shape	
21689	_	OsTRM13, OsTrm13, TRM13, Trm13	_	Trm13p homolog			3	LOC_Os03g61750. GO:1901002: positive regulation of response to salt stress. a rice homolog of Saccharomyces cerevisiea Trm13p. methyltransferase-Trm13-domain-containing protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0833200	LOC_Os03g61750.1				GO:0008175 - tRNA methyltransferase activity, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0030488 - tRNA methylation, GO:0005634 - nucleus	TO:0000495 - chlorophyll content, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006002 - proline content	
21690	_	OsRAM1, RAM1	_				11	LOC_Os11g31100. a homologous gene of RAM1 in rice. GO:0036377: arbuscular mycorrhizal association.		Os11g0507300	LOC_Os11g31100.1				GO:0009610 - response to symbiotic fungus		
21691	_	FCO2	_	Functioning in Cesium Over-transport 2			8		 Biochemical character	Os08g0517200	LOC_Os08g40530.2, LOC_Os08g40530.1				GO:0046872 - metal ion binding, GO:0030001 - metal ion transport, GO:0000166 - nucleotide binding, GO:0005516 - calmodulin binding, GO:0016021 - integral to membrane		
21692	_	FCO6	_	Functioning in Cesium Over-transport 6			1		 Biochemical character	Os01g0546400	LOC_Os01g36580.1				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0030001 - metal ion transport		
21693	_	FCO9	_	Functioning in Cesium Over-transport 9			12		 Biochemical character	Os12g0518200	LOC_Os12g33300.1				GO:0030001 - metal ion transport, GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane		
21694	_	FCO10	_	Functioning in Cesium Over-transport 10			3	GO:0035428: hexose transmembrane transport.	 Biochemical character	Os03g0101300	LOC_Os03g01170.1				GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0005355 - glucose transmembrane transporter activity, GO:0005351 - sugar:hydrogen symporter activity, GO:0046323 - glucose import		
21695	FCO11	OsFCO11, OsVPE1, VPE1	FUNCTIONING IN CESIUM OVER-TRANSPORT 11	Functioning in Cesium Over-transport 11, vacuolar Pi efflux transporter 1, vacuolar phosphate efflux transporter 1	VACUOLAR PHOSPHATE EFFLUX TRANSPORTER 1	Osvpe1, Osvpe1-1	4	TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0555300	LOC_Os04g46880.2, LOC_Os04g46880.1				GO:0006817 - phosphate transport, GO:0042594 - response to starvation, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0005215 - transporter activity, GO:0055085 - transmembrane transport		
21696	TCD11	RPS6, OsRPS6, OsTCD11	THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 11	thermo-sensitive chlorophyll-deficient mutant 11, plastid ribosomal protein S6	PLASTID RIBOSOMAL PROTEIN S6	tcd11	12	LOC_Os12g37610.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os12g0563200	LOC_Os12g37610.1				GO:0003735 - structural constituent of ribosome, GO:0070181 - SSU rRNA binding, GO:0009658 - chloroplast organization, GO:0009266 - response to temperature stimulus, GO:0042255 - ribosome assembly, GO:0009409 - response to cold, GO:0005840 - ribosome, GO:0006412 - translation	TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000432 - temperature response trait, TO:0000303 - cold tolerance	PO:0025034 - leaf 
21697	_	OsCUL1, CUL1	_	Cullin-1, Cullin 1			1		 Tolerance and resistance - Disease resistance	Os01g0369000	LOC_Os01g27150.2, LOC_Os01g27150.1				GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0031625 - ubiquitin protein ligase binding, GO:0009615 - response to virus	TO:0000148 - viral disease resistance	
21698	MAPKKK11	OsMAPKKK11	MAPK KINASE KINASE 11	MAPK kinase kinase 11	MAPK KINASE KINASE 11	Osmapkkk11	7	a rice ortholog of AtMAPKKK5.	 Tolerance and resistance - Disease resistance	Os07g0119000 	LOC_Os07g02780.1				GO:0004702 - receptor signaling protein serine/threonine kinase activity, GO:0043410 - positive regulation of MAPKKK cascade, GO:0010200 - response to chitin, GO:0005524 - ATP binding, GO:0005737 - cytoplasm		
21699	MAPKKK18	OsMAPKKK18	MAPK KINASE KINASE 18	MAPK kinase kinase 18	MAPK KINASE KINASE 18		3	a rice ortholog of AtMAPKKK5.	 Tolerance and resistance - Disease resistance	Os03g0764300  	LOC_Os03g55560.2, LOC_Os03g55560.1				GO:0005886 - plasma membrane, GO:0010200 - response to chitin, GO:0043410 - positive regulation of MAPKKK cascade, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004702 - receptor signaling protein serine/threonine kinase activity		
21700	_	BPM	_	2, 3-bisphosphoglycerate-independent phosphoglycerate mutase			1	LOC_Os01g60190.	 Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance	Os01g0817700	LOC_Os01g60190.2, LOC_Os01g60190.1				GO:0004619 - phosphoglycerate mutase activity, GO:0030145 - manganese ion binding, GO:0009651 - response to salt stress, GO:0009415 - response to water, GO:0006007 - glucose catabolic process, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance, TO:0000237 - water stress trait	PO:0007022 - seed imbibition stage 
21701	ARS		ARGININOSUCCINATE SYNTHASE	Argininosuccinate synthase	ARGININOSUCCINATE SYNTHASE		12	LOC_Os12g13320.	 Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance	Os12g0235800	LOC_Os12g13320.1				GO:0006526 - arginine biosynthetic process, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004055 - argininosuccinate synthase activity, GO:0000053 - argininosuccinate metabolic process, GO:0000050 - urea cycle, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0007022 - seed imbibition stage 
21702	_	ARP	_	60S acidic ribosomal protein			11	LOC_Os11g04070.	 Seed,  Tolerance and resistance - Stress tolerance	Os11g0135400	LOC_Os11g04070.1				GO:0042254 - ribosome biogenesis, GO:0005840 - ribosome, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0007022 - seed imbibition stage 
21703	_	CDP3.2	_	cupin domain containing protein 3.2			3	LOC_Os03g21790.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os03g0336100	LOC_Os03g21790.1				GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0045735 - nutrient reservoir activity	TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0007022 - seed imbibition stage , PO:0001170 - seed development stage 
21704	BMY6		BETA-AMYLASE 6	beta-amylase 6	BETA-AMYLASE 6		10		 Biochemical character	Os10g0565150							
21705	_	OsBamy2, Bamy2	_	beta-amylase 2			3	Q10RZ1. GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os03g0141200	LOC_Os03g04770.1				GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process		
21706	_	OsBamy4, Bamy4	_	beta-amylase 4			1	GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os01g0236800	LOC_Os01g13550.1				GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process		
21707	_		_	beta-amylase			9	GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os09g0569200	LOC_Os09g39570.1				GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process		
21708	_		_	beta-amylase			10	GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os10g0565200	LOC_Os10g41550.1				GO:0000272 - polysaccharide catabolic process, GO:0016161 - beta-amylase activity		
21709	_		_	beta-amylase			3	GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os03g0351300	LOC_Os03g22790.1				GO:0000272 - polysaccharide catabolic process, GO:0016161 - beta-amylase activity		
21710	CUL3B	OsCUL3b, CUL3b	CULLIN 3B	Cullin3b, Cullin 3b	CULLIN 3B		4			Os04g0643000	LOC_Os04g55030.1				GO:0031625 - ubiquitin protein ligase binding, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0031461 - cullin-RING ubiquitin ligase complex		
21711	CUL3BC	OsCUL3c, CUL3c	CULLIN 3C	Cullin3c, Cullin 3c	CULLIN 3C		8			Os08g0170900	LOC_Os08g07400.1				GO:0031625 - ubiquitin protein ligase binding, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0031461 - cullin-RING ubiquitin ligase complex		
21712	_	CYP72A1	_	cytochrome P450 72A1			1	LOC_Os01g43774.	 Tolerance and resistance - Stress tolerance	Os01g0628000	LOC_Os01g43774.1				GO:0020037 - heme binding, GO:0009414 - response to water deprivation, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding	TO:0000276 - drought tolerance	
21713	_	LEA D-34	_	late embryogenesis abundant protein D-34			12	LOC_Os12g43140.	 Tolerance and resistance - Stress tolerance	Os12g0626500	LOC_Os12g43140.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21714	_	MYB	_	MYB transcription factor			6	LOC_Os06g45840.	 Tolerance and resistance - Stress tolerance	Os06g0669700	LOC_Os06g45840.2, LOC_Os06g45840.1				GO:0003677 - DNA binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21715	_		_	dirigent			3	LOC_Os03g59440.	 Tolerance and resistance - Stress tolerance	Os03g0809000	LOC_Os03g59440.1				GO:0048046 - apoplast, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21716	_	OsPR5, PR5	_				1	GO:0061630: ubiquitin protein ligase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0122000	LOC_Os01g03180.1				GO:0016021 - integral to membrane, GO:0007275 - multicellular organismal development, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus		
21717	EXPA32	OsEXPA32	ALPHA-EXPANSIN 32	expansin A32	ALPHA-EXPANSIN 32		8	Q6YYW5.		Os08g0561900	LOC_Os08g44790.1				GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization		
21718	EXPA31	OsEXPA31	ALPHA-EXPANSIN 31	expansin A31	ALPHA-EXPANSIN 31		8	Q75I75.		Os03g0428700	LOC_Os03g31480.1				GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall		
21719	_	LMM5.4	_	Lesion mimic mutant 5.4		lmm5.4	4	eukaryotic translation elongation factor 1A-like gene family member.	 Tolerance and resistance - Lesion mimic	Os04g0595300					GO:0042742 - defense response to bacterium, GO:0005525 - GTP binding, GO:0050832 - defense response to fungus, GO:0043069 - negative regulation of programmed cell death, GO:0008270 - zinc ion binding, GO:0005622 - intracellular, GO:0031348 - negative regulation of defense response, GO:0003924 - GTPase activity, GO:0003746 - translation elongation factor activity	TO:0000175 - bacterial blight disease resistance, TO:0000063 - mimic response, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content	
21720	_	OsAP10, AP10	_	Aspartic proteinase oryzasin-1			1		 Biochemical character	Os01g0663400	LOC_Os01g47410.2, LOC_Os01g47410.1				GO:0006508 - proteolysis, GO:0006629 - lipid metabolic process, GO:0030163 - protein catabolic process, GO:0004190 - aspartic-type endopeptidase activity		
21721	_	OsAAO3, AAO3	_	aldehyde oxidase 3			7	LOC_Os07g18154.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0282300	LOC_Os07g18154.2, LOC_Os07g18154.1				GO:0005829 - cytosol, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0009688 - abscisic acid biosynthetic process, GO:0009851 - auxin biosynthetic process, GO:0009651 - response to salt stress, GO:0004031 - aldehyde oxidase activity, GO:0050660 - FAD binding, GO:0009055 - electron carrier activity	TO:0006001 - salt tolerance	
21722	DPW2	OsDPW2	DEFECTIVE POLLEN WALL 2	defective pollen wall 2		dpw2, dpw2-1, dpw2-2	1	LOC_Os01g70025 in Xu et al. 2016 and Pu et al. 2017. (The locus name was not found in MSU Rice Genome Annotation Project Release 7 data)  The RapID: Os01g0924933 was derived from the amino acid sequence in Fig.4D of Xu et al. 2016. TO:0020076: phenolic compound content. BAHD acyltransferase.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0924933					GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009555 - pollen development, GO:0010208 - pollen wall assembly, GO:0005737 - cytoplasm, GO:0007067 - mitosis, GO:0010152 - pollen maturation, GO:0048653 - anther development	TO:0000437 - male sterility, TO:0000281 - metabolite content related trait, TO:0000215 - stamen anatomy and morphology trait, TO:0000187 - anther color	PO:0001007 - pollen development stage , PO:0020048 - microspore , PO:0009071 - anther wall tapetum , PO:0001004 - anther development stage 
21723	_	OsFTIP1, FTIP1	_	FT-INTERACTING PROTEIN1, FT-INTERACTING PROTEIN 1		Osftip1-1, Osftip1-2	6	a rice ortholog of Arabidopsis FTIP1. a member of the family of multiple C2 domain and transmembrane region proteins (MCTPs).	 Biochemical character,  Reproductive organ - Heading date	Os06g0614000 	LOC_Os06g41090.1				GO:0051223 - regulation of protein transport, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0005783 - endoplasmic reticulum	TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0005417 - phloem , PO:0000071 - companion cell 
21724	_	OsUbDKgamma4, UbDKgamma4	_	Ubiquitin-Like Domain Kinase gamma 4		OsUbDKg4, Osubdkg4-1, Osubdkg4-2	2		 Reproductive organ - Heading date	Os02g0290500 	LOC_Os02g18840.1				GO:0016301 - kinase activity, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0045732 - positive regulation of protein catabolic process	TO:0002616 - flowering time, TO:0000137 - days to heading	
21725	_	Xa10-Ni	_	Xa10-like gene			11	LOC_Os11g37570. TO:0006047: calcium concentration.	 Tolerance and resistance - Disease resistance	Os11g0586400	LOC_Os11g37570.1				GO:0042742 - defense response to bacterium, GO:0010942 - positive regulation of cell death, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0051924 - regulation of calcium ion transport	TO:0000175 - bacterial blight disease resistance	
21726	_	OsEno1, Eno1	_	enolase 1			9	plastidic enolase.	 Biochemical character	Os09g0375000	LOC_Os09g20820.1				GO:0004634 - phosphopyruvate hydratase activity, GO:0000015 - phosphopyruvate hydratase complex, GO:0000287 - magnesium ion binding, GO:0006096 - glycolysis, GO:0009570 - chloroplast stroma, GO:0009735 - response to cytokinin stimulus, GO:0010090 - trichome morphogenesis		PO:0009010 - seed , PO:0020104 - leaf sheath 
21727	_	OsEno3, Eno3	_	enolase 3			3	plastidic enolase. AB917428.	 Biochemical character,  Vegetative organ - Leaf	Os03g0266200	LOC_Os03g15950.1				GO:0000015 - phosphopyruvate hydratase complex, GO:0000287 - magnesium ion binding, GO:0048366 - leaf development, GO:0006096 - glycolysis, GO:0004634 - phosphopyruvate hydratase activity	TO:0000655 - leaf development trait	PO:0005020 - vascular bundle , PO:0009010 - seed , PO:0001050 - leaf development stage 
21728	_	OsEno6, Eno6	_	enolase 6				AK107411.	 Biochemical character								
21729	_	OsAGSW1, AGSW1	_	ABC1-like kinase related to Grain size and Weight 1			5	LOC_Os05g25840. TO:0020109: vascular bundle development trait.	 Seed - Morphological traits	Os05g0323800	LOC_Os05g25840.3, LOC_Os05g25840.1				GO:0005524 - ATP binding, GO:0051302 - regulation of cell division, GO:0010051 - xylem and phloem pattern formation, GO:0009507 - chloroplast, GO:0004672 - protein kinase activity, GO:0010618 - aerenchyma formation	TO:0000397 - grain size, TO:0002762 - width of grain with hull, TO:0002761 - length of grain with hull, TO:0002661 - seed maturation, TO:0000590 - grain weight, TO:0000382 - 1000-seed weight, TO:0000484 - seed shape, TO:0000391 - seed size	PO:0005020 - vascular bundle 
21730	_	PigmR	_	Magnaporthe grisea resistance-gmR, Blast resistance gmR			6	KU904633 (indica): Pigm_GM4.7, NBS-LRR type R protein Pigm-R6. APF29096.2. (between Os06g0286500 and Os06g0287500). PigmR confers broad-spectrum resistance. (Dang et al. 2017)	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity						GO:0050832 - defense response to fungus	TO:0000382 - 1000-seed weight, TO:0000590 - grain weight, TO:0000396 - grain yield, TO:0000180 - spikelet fertility, TO:0000074 - blast disease	
21731	_	PigmS	_	Magnaporthe grisea resistance-gmS, Blast resistance gmS			6	KU904633 (indica): Pigm_GM4.10, NBS-LRR type R protein Pigm-R8. APF29097.1. (between Os06g0286500 and Os06g0287500). PigmS competitively attenuates PigmR homodimerization to suppress resistance. (Dang et al. 2017) GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity						GO:0031348 - negative regulation of defense response, GO:0050832 - defense response to fungus	TO:0000180 - spikelet fertility, TO:0000074 - blast disease, TO:0000382 - 1000-seed weight, TO:0000590 - grain weight, TO:0000396 - grain yield	
21732	_	OsLBD37, LBD37	_	LATERAL ORGAN BOUNDARIES DOMAIN 37, lateral organ boundaries domain protein 37			3	similar to AtLBD37.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os03g0445700	LOC_Os03g33090.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0048511 - rhythmic process, GO:0048573 - photoperiodism, flowering, GO:2000028 - regulation of photoperiodism, flowering	TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000137 - days to heading, TO:0000371 - yield trait, TO:0000207 - plant height, TO:0002616 - flowering time	
21733	_	OsLBD38, LBD38	_	LATERAL ORGAN BOUNDARIES DOMAIN 38, lateral organ boundaries domain protein 38			3	similar to AtLBD37.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os03g0609500	LOC_Os03g41330.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0048573 - photoperiodism, flowering, GO:0003700 - transcription factor activity, GO:2000028 - regulation of photoperiodism, flowering, GO:0048511 - rhythmic process	TO:0000207 - plant height, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000371 - yield trait, TO:0000447 - filled grain number, TO:0000040 - panicle length	
21734	_	OsMAPKKKepsilon, MAPKKKepsilon	_	MAPK kinase kinase epsilon			4	LOC_Os04g56530. GO:0023014:  signal transduction by protein phosphorylation.	 Tolerance and resistance - Disease resistance	Os04g0660500	LOC_Os04g56530.1				GO:0005737 - cytoplasm, GO:0007346 - regulation of mitotic cell cycle, GO:0031098 - stress-activated protein kinase signaling pathway, GO:0032147 - activation of protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0000165 - MAPKKK cascade, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding	TO:0000074 - blast disease	
21735	_	OsMAPKKKalpha, MAPKKKalpha	_	MAPK kinase kinase alpha			11	LOC_Os11g10100. GO:0023014:  signal transduction by protein phosphorylation.		Os11g0207200	LOC_Os11g10100.3, LOC_Os11g10100.2, LOC_Os11g10100.1				GO:0031098 - stress-activated protein kinase signaling pathway, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0007346 - regulation of mitotic cell cycle, GO:0032147 - activation of protein kinase activity		
21736	WSP1		WHITE-STRIPE LEAVES AND PANICLES 1	white-stripe leaves and panicles 1		wsp1	4	LOC_Os04g51280. RNA editing factor. MORF Family Protein. a MORF2-like protein. GO:1900865: chloroplast RNA modification.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os04g0601800	LOC_Os04g51280.1				GO:0008380 - RNA splicing, GO:0009451 - RNA modification, GO:0042254 - ribosome biogenesis, GO:0009658 - chloroplast organization, GO:0048366 - leaf development, GO:0009507 - chloroplast	TO:0000326 - leaf color, TO:0000201 - panicle color, TO:0000495 - chlorophyll content, TO:0000655 - leaf development trait, TO:0002715 - chloroplast development trait	PO:0001050 - leaf development stage , PO:0009049 - inflorescence , PO:0025034 - leaf 
21737	_	Pi-jnw1	_	PYRICULARIA ORYZAE RESISTANCE JNW1			11	a Blast Resistant Gene Pi-jnw1 from the japonica Rice Landrace Jiangnanwian. Pi-jnw1 was finally mapped to the 282 kb region between markers W28 and BS39.	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	
21738	P5CR	OsP5CR	PYRROLINE-5-CARBOXYLATE REDUCTASE	delta-pyrroline-5-carboxylate reductase, pyrroline-5-carboxylate reductase	PYRROLINE-5-CARBOXYLATE REDUCTASE		1	GO:0055129: L-proline biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0948400	LOC_Os01g71990.1				GO:0004735 - pyrroline-5-carboxylate reductase activity, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0005618 - cell wall, GO:0006970 - response to osmotic stress, GO:0006561 - proline biosynthetic process	TO:0000095 - osmotic response sensitivity, TO:0006002 - proline content	
21739	_		_	receptor protein kinase			2			Os02g0710500	LOC_Os02g48080.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0002237 - response to molecule of bacterial origin, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane		
21740	BKL		BLANKET LEAF				6	a hairy-leaf gene from Oryza nivara. BKL tightly linked to SSR marker RM30 and located between SSR markers RM3567 and RM7243 at map distances of 5.8 and 1.1 cM, respectively.	 Vegetative organ - Leaf							TO:0002722 - leaf pubescence, TO:0001017 - water use efficiency, TO:0001018 - transpiration rate, TO:0000504 - leaf temperature	
21741	PDX1.3C	OsPDX1.3c	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3C	PYRIDOXINE BIOSYNTHESIS PROTEIN1.3c	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3C		11	LOC_Os11g48080. 	 Biochemical character	Os11g0708500	LOC_Os11g48080.1				GO:0003824 - catalytic activity, GO:0042823 - pyridoxal phosphate biosynthetic process		
21742	_		_				1	a putative heat and acid stable phosphoprotein.		Os01g0752800 	LOC_Os01g54920.2, LOC_Os01g54920.1						
21743	_	OsMsh6, Msh6	_	AtMsh6 homolog			9	LOC_Os09g24220. a homologue to AtMsh6 (At4g02070) in the MMR system of A. thaliana. OsMsh6 deficiency resulted in spontaneous generation of a wide variety of single-nucleotide mutations. Therefore the mutated OsMsh6 can be regarded as a mutator.		Os09g0407600	LOC_Os09g24220.1				GO:0003684 - damaged DNA binding, GO:0005524 - ATP binding, GO:0030983 - mismatched DNA binding, GO:0006298 - mismatch repair, GO:0043570 - maintenance of DNA repeat elements, GO:0000404 - loop DNA binding, GO:0008094 - DNA-dependent ATPase activity		
21744	DGS2	RPC4a, RPC4b, RPC4c, RPC4d, RPC4e	DUPLICATED GAMETOPHYTIC STERILITY 2	RNA polymerase III subunit C4a, RNA polymerase III subunit C4b, RNA polymerase III subunit C4c, RNA polymerase III subunit C4d, RNA polymerase III subunit C4e			7	Oryza nivara allele DGS2-nivara+ region has five tandem copies of RPC4 (RPC4a-e) and there are absence of the duplicated gene at Oryza sativa allele DGS2-T65s region. RPC4a (AB758281), RPC4b (AB758282), RPC4c (AB758283), RPC4d (AB758284), and RPC4e (AB758285).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000053 - pollen sterility	
21745	RDN	OsRDN, OsRDN1, RDN1	ROOT DETERMINED NODULATION	ROOT DETERMINED NODULATION 1			1	LOC_Os01g16600. TO:0000900: root nodule number. an enzyme of hydroxyproline O-arabinosyltransferase (HPAT/RDN) family.	 Biochemical character,  Vegetative organ - Root	Os01g0272600	LOC_Os01g16600.1				GO:0009877 - nodulation		PO:0009005 - root 
21746	WFSL1		WHITE FINE STRIPE LEAF 1	white fine stripe leaf 1	WHITE FINE STRIPE LEAF 1	wfsl1	1	LOC_Os01g01920.	 Biochemical character,  Coloration - Chlorophyll	Os01g0109300	LOC_Os01g01920.2, LOC_Os01g01920.1				GO:0006203 - dGTP catabolic process, GO:0008832 - dGTPase activity, GO:0042254 - ribosome biogenesis, GO:0010109 - regulation of photosynthesis, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast	TO:0000396 - grain yield, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	PO:0025034 - leaf , PO:0020104 - leaf sheath 
21747	_	Gn8.1	_	grain number 8.1				Gn8.1, a newly identified gene from wild rice Oryza longistaminata was suggested conferring rice big panicle and high grain yield but little side effects on the rice development, and showed a semi-dominant inheritable model, expression of Gn8.1 can greatly increase grain number and yield. (Fan et al. 2017)	 Reproductive organ - panicle,  Character as QTL - Yield and productivity							TO:0002759 - grain number, TO:0006032 - panicle size	
21748	PRXIIC	OsPrxII C, PrxII C, OsPrxIIC, PrxIIC	TYPE-II PEROXIREDOXIN C	Type-II Prx C, Type-II peroxiredoxin C	TYPE-II PEROXIREDOXIN C		1	LOC_Os01g48420. Q9FR35.		Os01g0675100	LOC_Os01g48420.1				GO:0004601 - peroxidase activity, GO:0045454 - cell redox homeostasis, GO:0051920 - peroxiredoxin activity		
21749	PRXIIE3	OsPrxII E3, PrxII E3, OsPrxIIE3, PrxIIE3	TYPE-II PEROXIREDOXIN E3	Type-II Prx E3, Type-II peroxiredoxin E3	TYPE-II PEROXIREDOXIN E3		1	LOC_Os01g24740.			LOC_Os01g24740						
21750	PRXIIE1	OsPrxII E1, PrxII E1, OsPrxIIE1, PrxIIE1	TYPE-II PEROXIREDOXIN E1	Type-II Prx E1, Type-II peroxiredoxin E1	TYPE-II PEROXIREDOXIN E1		6	LOC_Os06g42000. Q69TY4.	 Biochemical character	Os06g0625500	LOC_Os06g42000.1				GO:0051920 - peroxiredoxin activity, GO:0045454 - cell redox homeostasis, GO:0004601 - peroxidase activity		
21751	PRXIIF	OsPrxII F, PrxII F, OsPrxIIF, PrxIIF	TYPE-II PEROXIREDOXIN F	Type-II Prx F, Type-II peroxiredoxin F	TYPE-II PEROXIREDOXIN F		1	LOC_Os01g16152. Q9SDD6.	 Biochemical character	Os01g0266600	LOC_Os01g16152.1				GO:0046686 - response to cadmium ion, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0051920 - peroxiredoxin activity, GO:0045454 - cell redox homeostasis		
21752	PRXQ	OsPrx Q, Prx Q, OsPrxQ, PrxQ	PEROXIREDOXIN Q	peroxiredoxin Q	PEROXIREDOXIN Q		6	LOC_Os06g09610. P0C5D5. P0C5D4.	 Biochemical character	Os06g0196300	LOC_Os06g09610.2, LOC_Os06g09610.1				GO:0051920 - peroxiredoxin activity, GO:0045454 - cell redox homeostasis, GO:0004601 - peroxidase activity		PO:0025034 - leaf , PO:0009006 - shoot system 
21753	1CYSPRXA	Os1-CysPrxA, 1-CysPrxA	1-CYS PEROXIREDOXIN A	1 Cys-peroxiredoxin	1-CYS PEROXIREDOXIN A		7	LOC_Os07g44430. P0C5C9.	 Biochemical character,  Seed	Os07g0638300	LOC_Os07g44430.1				GO:0051920 - peroxiredoxin activity, GO:0004601 - peroxidase activity, GO:0045454 - cell redox homeostasis, GO:0048316 - seed development		PO:0009089 - endosperm , PO:0007633 - endosperm development stage , PO:0009010 - seed 
21754	_	OsAM1, AM1	_				4	K+ efflux antiporter.	 Biochemical character	Os04g0682800	LOC_Os04g58620.1				GO:0006813 - potassium ion transport, GO:0015299 - solute:hydrogen antiporter activity, GO:0015386 - potassium:hydrogen antiporter activity		
21755	SLAC7	OsSLAC7	SLOW ANION CHANNEL 7	SLOW ANION CHANNEL-ASSOCIATED 7	SLOW ANION CHANNEL 7	slac7-1	1	LOC_Os01g28840. GO:1904821: chloroplast disassembly.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0385400	LOC_Os01g28840.1				GO:0009416 - response to light stimulus, GO:0008308 - voltage-gated anion channel activity, GO:0006873 - cellular ion homeostasis, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0048573 - photoperiodism, flowering, GO:0005634 - nucleus, GO:0010117 - photoprotection	TO:0000137 - days to heading, TO:0000605 - hydrogen peroxide content, TO:0002667 - abscisic acid content, TO:0000316 - photosynthetic ability, TO:0000492 - leaf shape, TO:0000495 - chlorophyll content, TO:0002655 - starch grain size, TO:0000075 - light sensitivity, TO:0000207 - plant height, TO:0000227 - root length, TO:0000089 - panicle type	
21756	_	SLAC	_	SLOW ANION CHANNEL			1	One of nine SLAC genes in rice.	 Biochemical character	Os01g0226600	LOC_Os01g12680.4, LOC_Os01g12680.3, LOC_Os01g12680.2, LOC_Os01g12680.1				GO:0055085 - transmembrane transport		
21757	_	SLAC	_	SLOW ANION CHANNEL			1	One of nine SLAC genes in rice.	 Biochemical character	Os01g0247700	LOC_Os01g14520.1				GO:0055085 - transmembrane transport		
21758	_	SLAC	_	SLOW ANION CHANNEL			1	One of nine SLAC genes in rice.	 Biochemical character	Os01g0623200	LOC_Os01g43460.2, LOC_Os01g43460.1				GO:0055085 - transmembrane transport		
21759	_	SLAC	_	SLOW ANION CHANNEL			5	One of nine SLAC genes in rice.	 Biochemical character	Os05g0219900	LOC_Os05g13320.1				GO:0006873 - cellular ion homeostasis, GO:0008308 - voltage-gated anion channel activity		
21760	_	SLAC	_	SLOW ANION CHANNEL			5	One of nine SLAC genes in rice.	 Biochemical character	Os05g0269200	LOC_Os05g18670.1				GO:0055085 - transmembrane transport		
21761	_	SLAC	_	SLOW ANION CHANNEL			5	One of nine SLAC genes in rice.	 Biochemical character	Os05g0584900	LOC_Os05g50770.2				GO:0055085 - transmembrane transport		
21762	_	SLAC	_	SLOW ANION CHANNEL			7	One of nine SLAC genes in rice.	 Biochemical character	Os07g0181100	LOC_Os07g08350.1				GO:0008308 - voltage-gated anion channel activity, GO:0006873 - cellular ion homeostasis		
21763	_	Os-MYB2, OsMYB2, MYB2	_				3			Os03g0371800	LOC_Os03g25550.1				GO:0003677 - DNA binding		
21764	_	Os-MYB39, OsMYB39, MYB39	_				4	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding. GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting. GO:0044212: transcription regulatory region DNA binding.	 Other	Os04g0461000	LOC_Os04g38740.1				GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0043565 - sequence-specific DNA binding		
21765	_	SQD2.1, OsSQD2.1	_	sulfoquinovosyl transferase-like protein 2.1, Sulfoquinovosyldiacylglycerol synthase 2.1			7	LOC_Os07g01030.	 Biochemical character	Os07g0100300	LOC_Os07g01030.1				GO:0009247 - glycolipid biosynthetic process, GO:0046510 - UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity, GO:0009941 - chloroplast envelope, GO:0046506 - sulfolipid biosynthetic process		
21766	PLS2	SQD2.3, OsSQD2.3	PREMATURE LEAF SENESCENT 2	sulfoquinovosyl transferase-like protein 2.3, Sulfoquinovosyldiacylglycerol synthase 2.3, Premature Leaf Senescent 2, premature leaf senescence 2		pls2	3	LOC_Os03g15840.	 Biochemical character,  Vegetative organ - Leaf	Os03g0265100	LOC_Os03g15840.1				GO:0010150 - leaf senescence, GO:0005783 - endoplasmic reticulum, GO:0009941 - chloroplast envelope, GO:0046506 - sulfolipid biosynthetic process, GO:0046510 - UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity, GO:0009247 - glycolipid biosynthetic process	TO:0000328 - sucrose content, TO:0000249 - leaf senescence, TO:0000605 - hydrogen peroxide content, TO:0001018 - transpiration rate, TO:0000522 - stomatal conductance, TO:0000326 - leaf color, TO:0001027 - net photosynthetic rate	PO:0005645 - leaf mesophyll , PO:0001054 - 4 leaf senescence stage 
21767	MEICA1		MEIOTIC CHROMOSOME ASSOCIATION 1	Meiotic Chromosome Association 1		meica1	3	LOC_Os03g05040. GO:1990918: double-strand break repair involved in meiotic recombination.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os03g0144000	LOC_Os03g05040.1				GO:0000710 - meiotic mismatch repair, GO:0045132 - meiotic chromosome segregation, GO:0010520 - regulation of reciprocal meiotic recombination	TO:0000421 - pollen fertility, TO:0000180 - spikelet fertility, TO:0000485 - sterility related trait	
21768	_		_	cytochrome c			1		 Biochemical character,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os01g0885000 	LOC_Os01g66180.2, LOC_Os01g66180.1				GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c, GO:0005758 - mitochondrial intermembrane space, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen, GO:0046872 - metal ion binding	TO:0000207 - plant height, TO:0000346 - tiller number	
21769	_	OsMPH1, MPH1, OsMYB45, MYB45	_	MYB-like gene of Plant Height 1, transcription factor OsMYB45, MYB protein 45		osmyb45	6	LOC_Os06g45890.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os06g0670300	LOC_Os06g45890.1				GO:0046686 - response to cadmium ion, GO:0006351 - transcription, DNA-dependent, GO:0009826 - unidimensional cell growth, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0002616 - flowering time, TO:0000547 - primary branch number, TO:0006032 - panicle size, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000145 - internode length, TO:0000557 - secondary branch number	PO:0009029 - stamen , PO:0020141 - stem node , PO:0009000 - pulvinus , PO:0025034 - leaf , PO:0020121 - lateral root 
21770	_	OsUEV1A, UEV1A	_	Ubc-E2 variant 1A			3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0712300	LOC_Os03g50440.1				GO:0005737 - cytoplasm, GO:0006974 - response to DNA damage stimulus, GO:0070534 - protein K63-linked ubiquitination, GO:0031625 - ubiquitin protein ligase binding, GO:0016020 - membrane, GO:0006301 - postreplication repair, GO:0005634 - nucleus, GO:0004842 - ubiquitin-protein ligase activity		
21771	_	OsUEV1D, UEV1D	_	Ubc-E2 variant 1D			4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0684800	LOC_Os04g58800.2, LOC_Os04g58800.1				GO:0070534 - protein K63-linked ubiquitination, GO:0031625 - ubiquitin protein ligase binding, GO:0009414 - response to water deprivation, GO:0004842 - ubiquitin-protein ligase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006301 - postreplication repair, GO:0032502 - developmental process, GO:0006974 - response to DNA damage stimulus	TO:0000276 - drought tolerance	PO:0025034 - leaf 
21772	GWD1		ALPHA-GLUCAN, WATER DIKINASE 1	"\"alpha-glucan, water dikinase 1\""	ALPHA-GLUCAN, WATER DIKINASE 1		6	GO:2000883: positive regulation of starch catabolic process.	 Biochemical character,  Character as QTL - Yield and productivity	Os06g0498400 	LOC_Os06g30310.1				GO:0005524 - ATP binding, GO:0005983 - starch catabolic process, GO:0016301 - kinase activity	TO:0002661 - seed maturation	
21773	PRF1	OsPRF1	PROFILIN 1	Profilin-1, Profilin 1	PROFILIN 1		10	LOC_Os10g17660. Q9FUD1.		Os10g0323600	LOC_Os10g17660.1				GO:0003785 - actin monomer binding, GO:0015629 - actin cytoskeleton, GO:0005938 - cell cortex, GO:0042989 - sequestering of actin monomers		
21774	_	OsFH15, FH15	_	formin homology 15, forming family protein 15, FH2 protein 15, FH2 domain protein 15		Osfh15	9	LOC_ Os09g34180. Q69MT2. class I forming.	 Seed - Morphological traits - Grain shape	Os09g0517600	LOC_Os09g34180.1				GO:0008017 - microtubule binding, GO:0001558 - regulation of cell growth, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0051016 - barbed-end actin filament capping, GO:0051015 - actin filament binding, GO:0032233 - positive regulation of actin filament bundle formation, GO:0030041 - actin filament polymerization	TO:0000397 - grain size	PO:0020148 - shoot apical meristem , PO:0009051 - spikelet , PO:0009010 - seed 
21775	_	OsFH3, FH3	_	formin homology 3, forming family protein 3, FH2 protein 3, FH2 domain protein 3			10	Q7G6K7.		Os10g0119300	LOC_Os10g02980.1				GO:0004721 - phosphoprotein phosphatase activity		
21776	_	OsFH4, FH4	_	formin homology 4, forming family protein 4, FH2 protein 4, FH2 domain protein 4			10	Q8H8K7.		Os10g0347800	LOC_Os10g20710.1				GO:0016021 - integral to membrane, GO:0016020 - membrane		
21777	_	OsFH6, FH6	_	formin homology 6, forming family protein 6, FH2 protein 6, FH2 domain protein 6			8	LOC_Os08g17820.1 Q6ZCX3. Extensin family protein.		Os08g0280200	LOC_Os08g17820.2, LOC_Os08g17820.1				GO:0004721 - phosphoprotein phosphatase activity		
21778	_	OsFH7, FH7	_	formin homology 7, forming family protein 7, FH2 protein 7, FH2 domain protein 7Os02g0794700, Os02g0794900			2	Q6K8Z4.		Os02g0794900	LOC_Os02g55170.1, LOC_Os02g55150.2, LOC_Os02g55150.1				GO:0004721 - phosphoprotein phosphatase activity		
21779	_	OsFH8, FH8	_	formin homology 8, forming family protein 8, FH2 protein 8, FH2 domain protein 8			3	Q10Q99.		Os03g0204100	LOC_Os03g10680.1				GO:0016020 - membrane, GO:0016021 - integral to membrane		
21780	_	OsFH9, FH9	_	formin homology 9, forming family protein 9, FH2 protein 9, FH2 domain protein 9			8	Q6ZKB2.		Os08g0431200	LOC_Os08g33430.1				GO:0016020 - membrane, GO:0016021 - integral to membrane		
21781	_	OsFH10, FH10	_	formin homology 10, forming family protein 10, FH2 protein 10, FH2 domain protein 10			2	Q6H7U3.		Os02g0161100	LOC_Os02g06580.1				GO:0016021 - integral to membrane, GO:0016020 - membrane		
21782	_	OsFH12, FH12	_	formin homology 12, forming family protein 12, FH2 protein 12, FH2 domain protein 12			4	Q7XWS7.		Os04g0244900/Os04g0245000					GO:0004721 - phosphoprotein phosphatase activity		
21783	_	OsFH13, FH13	_	formin homology 13, forming family protein 13, FH2 protein 13, FH2 domain protein 13			7	LOC_Os07g39920.1 Q0D519. Extensin family protein.		Os07g0588200	LOC_Os07g39920.1				GO:0016020 - membrane, GO:0016021 - integral to membrane		
21784	_	OsFH14, FH14	_	formin homology 14, forming family protein 14, FH2 protein 14, FH2 domain protein 14			5	Q0DLG0.		Os05g0104000/Os05g0104100					GO:0016021 - integral to membrane, GO:0005829 - cytosol, GO:0016020 - membrane		
21785	_	OsFH16, FH16	_	formin homology 16, forming family protein 16, FH2 protein 16, FH2 domain protein 16			2	A3AB67.		Os02g0739100	LOC_Os02g50570.1				GO:0016020 - membrane, GO:0016021 - integral to membrane		
21786	_	OsSPS3, SPS3	_	solanesyl diphosphate synthase 3			12	LOC_Os12g17320. Q0INZ4. GO:0052923: all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity.	 Biochemical character	Os12g0271700	LOC_Os12g17320.1				GO:0015979 - photosynthesis, GO:0046872 - metal ion binding, GO:0050347 - trans-octaprenyltranstransferase activity, GO:0008299 - isoprenoid biosynthetic process, GO:0009507 - chloroplast		
21787	FBN5	OsFBN5	FIBRILLIN 5	fibrillin5, fibrillin 5	FIBRILLIN 5	Osfbn5, Osfbn5-1, Osfbn5-2	4	rice ortholog of Arabidopsis FBN5 (AtFBN5).	 Biochemical character	Os04g0422000	LOC_Os04g34460.1				GO:0008289 - lipid binding, GO:0009570 - chloroplast stroma, GO:0010236 - plastoquinone biosynthetic process		
21788	_	OsSTRL1, STRL1	_	STR-like 1			1	LOC_Os01g50330.	 Biochemical character	Os01g0698200	LOC_Os01g50330.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016844 - strictosidine synthase activity, GO:0009058 - biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane		
21789	_	OsSTRL2, STRL2	_	STR-like 2			3	LOC_Os03g15710.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0263600	LOC_Os03g15710.1				GO:0016844 - strictosidine synthase activity, GO:0048653 - anther development, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0010584 - pollen exine formation, GO:0010208 - pollen wall assembly, GO:0009058 - biosynthetic process, GO:0005783 - endoplasmic reticulum	TO:0000437 - male sterility	PO:0001004 - anther development stage 
21790	_	OsSTRL3, STRL3	_	STR-like 3			3	LOC_Os03g53950.	 Biochemical character	Os03g0750700	LOC_Os03g53950.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016844 - strictosidine synthase activity		
21791	_	OsSTRL4, STRL4	_	STR-like 4			6	LOC_Os06g35950.	 Biochemical character		LOC_Os06g35950						
21792	_	OsSTRL5, STRL5	_	STR-like 5			6	LOC_Os06g41820.	 Biochemical character		LOC_Os06g41820						
21793	_	OsSTRL6, STRL6	_	STR-like 6			6	LOC_Os06g41830.	 Biochemical character		LOC_Os06g41830						
21794	_	OsSTRL8, STRL8	_	STR-like 8			7	LOC_Os07g35970.	 Biochemical character	Os07g0543600	LOC_Os07g35970.1				GO:0009058 - biosynthetic process, GO:0016844 - strictosidine synthase activity, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum		
21795	_	OsSTRL12, STRL12	_	STR-like 12			7	LOC_Os07g42250.	 Biochemical character	Os07g0614000	LOC_Os07g42250.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016844 - strictosidine synthase activity		
21796	_	OsSTRL13, STRL13	_	STR-like 13			8	LOC_Os08g07810.	 Biochemical character	Os08g0175000	LOC_Os08g07810.1				GO:0016844 - strictosidine synthase activity, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016788 - hydrolase activity, acting on ester bonds		
21797	_	OsSTRL14, STRL14	_	STR-like 14			8	LOC_Os08g34330.	 Biochemical character	Os08g0442200	LOC_Os08g34330.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016844 - strictosidine synthase activity		
21798	_	OsSTRL18, STRL18	_	STR-like 18			9	LOC_Os09g20810.	 Biochemical character	Os09g0374900	LOC_Os09g20810.1				GO:0016844 - strictosidine synthase activity, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016788 - hydrolase activity, acting on ester bonds		
21799	_	OsSTRL19, STRL19	_	STR-like 19			10	LOC_Os10g39710.	 Biochemical character	Os10g0543500	LOC_Os10g39710.2, LOC_Os10g39710.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016844 - strictosidine synthase activity, GO:0016020 - membrane		
21800	_	OsSTRL20, STRL20	_	STR-like 20			11	LOC_Os11g04660.	 Biochemical character	Os11g0142400	LOC_Os11g04660.1				GO:0016844 - strictosidine synthase activity, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016788 - hydrolase activity, acting on ester bonds		
21801	_	OsSTRL21, STRL21	_	STR-like 21			12	LOC_Os12g04424. targeted by OS_AGO1_sRNA304 (Qin et al. 2017).	 Biochemical character	Os12g0138800	LOC_Os12g04424.2, LOC_Os12g04424.1				GO:0016021 - integral to membrane, GO:0016844 - strictosidine synthase activity, GO:0009058 - biosynthetic process		
21802	_	OsSTRL9, STRL9	_	STR-like 9			7	LOC_Os07g35990.	 Biochemical character		LOC_Os07g35990						
21803	_	OsSTRL10, STRL10	_	STR-like 10			7	LOC_Os07g36040.	 Biochemical character		LOC_Os07g36040						
21804	_	OsSTRL11, STRL11	_	STR-like 11			7	LOC_Os07g36060.	 Biochemical character		LOC_Os07g36060						
21805	_	OsSTRL15, STRL15	_	STR-like 15			9	LOC_Os09g20684.	 Biochemical character		LOC_Os09g20684						
21806	_	OsSTRL16, STRL16	_	STR-like 16			9	LOC_Os09g20700.	 Biochemical character		LOC_Os09g20700						
21807	_	OsSTRL17, STRL17	_	STR-like 17			9	LOC_Os09g20720.	 Biochemical character		LOC_Os09g20720						
21808	NFYC13	OsNF-YC13, NF-YC13	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-13	Nuclear transcription factor Y subunit C-13, NUCLEAR FACTOR-Y subunit C13, NUCLEAR FACTOR-Y subunit NF-YC13, NF-Y subfamily C member 13	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-13		1	LOC_Os01g08790.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0183400	LOC_Os01g08790.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0046982 - protein heterodimerization activity	TO:0006001 - salt tolerance	
21809	GLYR2	OsGLYR2	GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 2	glyoxylate/succinic semialdehyde reductase 2	GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 2		1	LOC_Os01g39270.	 Biochemical character	Os01g0574600	LOC_Os01g39270.1				GO:0030267 - glyoxylate reductase (NADP) activity, GO:0009536 - plastid, GO:0005739 - mitochondrion, GO:0051287 - NAD or NADH binding, GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity, GO:0009570 - chloroplast stroma		
21810	NOPE1 		NO PERCEPTION 1 	no perception 1		Osnope1	4	LOC_Os04g01520.	 Biochemical character	Os04g0105400	LOC_Os04g01520.1				GO:0015764 - N-acetylglucosamine transport, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0005886 - plasma membrane, GO:0055085 - transmembrane transport		
21811	_	OsEXTL, EXTL	_	OsExtensin-like gene, Extensin-like gene			10	LOC_Os10g22590. TO:0000993: cellulose content.	 Vegetative organ - Culm	Os10g0371000	LOC_Os10g22590.1				GO:0030243 - cellulose metabolic process, GO:0045488 - pectin metabolic process, GO:0009664 - plant-type cell wall organization, GO:0051510 - regulation of unidimensional cell growth, GO:0052386 - cell wall thickening	TO:0000207 - plant height, TO:0000068 - lodging incidence, TO:0000051 - stem strength	
21812	CCR18	OsCCR, CCR, OsCCR18	CINNAMOYL-COA REDUCTASE 18	Cinnamoyl-CoA reductase, Cinnamoyl-CoA reductase 18	CINNAMOYL-COA REDUCTASE 18		8	LOC_Os08g17500.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0277200 	LOC_Os08g17500.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0050832 - defense response to fungus, GO:0009642 - response to light intensity, GO:0009651 - response to salt stress	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000460 - light intensity sensitivity	
21813	UGT98B1	OsUGT98B1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B1	UDP-glucose-dependent glycosyltransferase 98B1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B1		1	LOC_Os01g08090.	 Biochemical character	Os01g0176000	LOC_Os01g08090.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity	TO:0002649 - pesticide sensitivity	
21814	UGT99B3	OsUGT98B3	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B3	UDP-glucose-dependent glycosyltransferase 98B3	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B3		10	LOC_Os10g09990.	 Biochemical character	Os10g0178500	LOC_Os10g09990.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity	TO:0002649 - pesticide sensitivity	
21815	UGT701A1	OsUGT701A1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 701A1	UDP-glucose-dependent glycosyltransferase 701A1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 701A1		4	LOC_Os04g44250.	 Biochemical character		LOC_Os04g44250				GO:0016740 - transferase activity, GO:0019748 - secondary metabolic process		
21816	UGT703A1	OsUGT703A1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A1	UDP-glucose-dependent glycosyltransferase 703A1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A1		1	LOC_Os01g45140.	 Biochemical character	Os01g0638600	LOC_Os01g45140.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		
21817	UGT72J2	OsUGT72J2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72J2	UDP-glucose-dependent glycosyltransferase 72J2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72J2		1	LOC_Os01g43270.	 Biochemical character		LOC_Os01g43270						
21818	UGT710C2	OsUGT710C2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 710C2	UDP-glucose-dependent glycosyltransferase 710C2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 710C2		7	LOC_Os07g13770.	 Biochemical character	Os07g0241500	LOC_Os07g13770.1				GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
21819	UGT87C1	OsUGT87C1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 87C1	UDP-glucose-dependent glycosyltransferase 87C1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 87C1		1	LOC_Os01g59110.	 Biochemical character	Os01g0805500	LOC_Os01g59110.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process		
21820	UGT74H4	OsUGT74H4	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 74H4	UDP-glucose-dependent glycosyltransferase 74H4	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 74H4		9	LOC_Os09g34230.	 Biochemical character	Os09g0518000	LOC_Os09g34230.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
21821	UGT75E1	OsUGT75E1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75E1	UDP-glucose-dependent glycosyltransferase 75E1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75E1		11	LOC_Os11g04860.	 Biochemical character	Os11g0145200	LOC_Os11g04860.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle		
21822	UGT75K1	OsUGT75K1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75K1	UDP-glucose-dependent glycosyltransferase 75K1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75K1		1	LOC_Os01g08440.	 Biochemical character	Os01g0179600	LOC_Os01g08440.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity		
21823	UGT84C1	OsUGT84C1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84C1	UDP-glucose-dependent glycosyltransferase 84C1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84C1		2	LOC_Os02g09510.	 Biochemical character	Os02g0188000	LOC_Os02g09510.1				GO:0008152 - metabolic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle		
21824	UGT84D1	OsUGT84D1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84D1	UDP-glucose-dependent glycosyltransferase 84D1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84D1		5	LOC_Os05g47950.	 Biochemical character	Os05g0552700	LOC_Os05g47950.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process		
21825	CYP71AA2	OsCYP71AA2	CYTOCHROME P450 71AA2	Cytochrome P450 71AA2	CYTOCHROME P450 71AA2		1	LOC_Os01g72760.	 Biochemical character	Os01g0957800	LOC_Os01g72760.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane		
21826	CYP71AA3	OsCYP71AA3	CYTOCHROME P450 71AA3	Cytochrome P450 71AA3	CYTOCHROME P450 71AA3		1	LOC_Os01g72740. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os01g0957600	LOC_Os01g72740.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016020 - membrane		
21827	CYP71AK1	OsCYP71AK1	CYTOCHROME P450 71AK1	Cytochrome P450 71AK1	CYTOCHROME P450 71AK1		9	LOC_Os09g36070.	 Biochemical character	Os09g0530275	LOC_Os09g36070.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity		
21828	CYP71E5	OsCYP71E5	CYTOCHROME P450 71E5	Cytochrome P450 71E5	CYTOCHROME P450 71E5		12	LOC_Os12g32850.	 Biochemical character	Os12g0512800	LOC_Os12g32850.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
21829	CYP71K7	OsCYP71K7	CYTOCHROME P450 71K7	Cytochrome P450 71K7	CYTOCHROME P450 71K7		6	LOC_Os06g43480.	 Biochemical character	Os06g0642200	LOC_Os06g43480.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0016021 - integral to membrane		
21830	CYP71K9	OsCYP71K9	CYTOCHROME P450 71K9	Cytochrome P450 71K9	CYTOCHROME P450 71K9		6	LOC_Os06g43430. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os06g0641800	LOC_Os06g43430.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane		
21831	CYP71X14	OsCYP71X14	CYTOCHROME P450 71X14	Cytochrome P450 71X14	CYTOCHROME P450 71X14		2	LOC_Os02g38940.	 Biochemical character	Os02g0601500	LOC_Os02g38940.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane		
21832	CYP71Y5	OsCYP71Y5	CYTOCHROME P450 71Y5	Cytochrome P450 71Y5	CYTOCHROME P450 71Y5		6	LOC_Os06g43350.	 Biochemical character		LOC_Os06g43350						
21833	CYP71Y7	OsCYP71Y7	CYTOCHROME P450 71Y7	Cytochrome P450 71Y7	CYTOCHROME P450 71Y7		6	LOC_Os06g43304. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os06g0639800	LOC_Os06g43304.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016021 - integral to membrane		
21834	CYP76M7	OsCYP76M7	CYTOCHROME P450 76M7	Cytochrome P450 76M7	CYTOCHROME P450 76M7		9	LOC_Os09g35940. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os09g0528700	LOC_Os09g35940.1				GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen		
21835	CYP78C6	OsCYP78C6	CYTOCHROME P450 78C6	Cytochrome P450 78C6	CYTOCHROME P450 78C6		9	LOC_Os09g35940. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os09g0528700	LOC_Os09g35940.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding		
21836	CYP81A5	OsCYP81A5	CYTOCHROME P450 81A5	Cytochrome P450 81A5	CYTOCHROME P450 81A5		3	LOC_Os03g55230.	 Biochemical character	Os03g0760000	LOC_Os03g55230.1				GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
21837	CYP81A6	OsCYP81A6	CYTOCHROME P450 81A6	Cytochrome P450 81A6	CYTOCHROME P450 81A6		3	LOC_Os03g55240. GO:0098542: defense response to other organism. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os03g0760100	LOC_Os03g55240.1				GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0042343 - indole glucosinolate metabolic process		
21838	CYP89B4	OsCYP89B4	CYTOCHROME P450 89B4	Cytochrome P450 89B4	CYTOCHROME P450 89B4		10	LOC_Os10g37100. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os10g0514901	LOC_Os10g37100.1				GO:0005506 - iron ion binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0042343 - indole glucosinolate metabolic process, GO:0016020 - membrane		
21839	CYP72A17	OsCYP72A17	CYTOCHROME P450 72A17	Cytochrome P450 72A17	CYTOCHROME P450 72A17		1	LOC_Os01g43700.	 Biochemical character	Os01g0627400	LOC_Os01g43700.2, LOC_Os01g43700.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane		
21840	CYP72A18	OsCYP72A18	CYTOCHROME P450 72A18	Cytochrome P450 72A18	CYTOCHROME P450 72A18		1	LOC_Os01g43710.	 Biochemical character	Os01g0627500	LOC_Os01g43710.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
21841	CYP72A19	OsCYP72A19	CYTOCHROME P450 72A19	Cytochrome P450 72A19	CYTOCHROME P450 72A19		1	LOC_Os01g43720.	 Biochemical character	Os01g0627600	LOC_Os01g43720.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
21842	CYP709C5	OsCYP709C5	CYTOCHROME P450 709C5	Cytochrome P450 709C5	CYTOCHROME P450 709C5		7	LOC_Os07g44140.	 Biochemical character	Os07g0635500	LOC_Os07g44140.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0016021 - integral to membrane		
21843	CYP709C11	OsCYP709C11	CYTOCHROME P450 709C11	Cytochrome P450 709C11	CYTOCHROME P450 709C11		6	LOC_Os06g09220.	 Biochemical character	Os06g0191800	LOC_Os06g09220.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
21844	CYP87C2	OsCYP87C2	CYTOCHROME P450 87C2	Cytochrome P450 87C2	CYTOCHROME P450 87C2		3	LOC_Os03g45619.	 Biochemical character	Os03g0658800	LOC_Os03g45619.2, LOC_Os03g45619.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0016132 - brassinosteroid biosynthetic process, GO:0010268 - brassinosteroid homeostasis, GO:0007275 - multicellular organismal development, GO:0016125 - sterol metabolic process, GO:0016021 - integral to membrane		
21845	CYP94C2	OsCYP94C2	CYTOCHROME P450 94C2	Cytochrome P450 94C2	CYTOCHROME P450 94C2		11	LOC_Os11g05380.	 Biochemical character	Os11g0151400	LOC_Os11g05380.1				GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
21846	CYP704A5	OsCYP704A5	CYTOCHROME P450 704A5	Cytochrome P450 704A5	CYTOCHROME P450 704A5		10	LOC_Os10g38110.	 Biochemical character,  Reproductive organ - panicle	Os10g0525000	LOC_Os10g38110.2, LOC_Os10g38110.1				GO:0010229 - inflorescence development, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
21847	_	OsGSTU3	_	glutathione transferase U3			10	LOC_Os10g38501. (Obsolete locus in MSU Rice Genome Annotation Project Release 7 data)									
21848	_	OsGSTU4	_	glutathione transferase U4			10	LOC_Os10g38495. (Obsolete locus in MSU Rice Genome Annotation Project Release 7 data)									
21849	_	HAL1	_	half-pipe-like leaf1, half-pipe-like leaf 1		hal1, hal1-d		TO:1000024: palea morphology trait.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn							TO:0002637 - leaf size, TO:0000614 - lemma shape, TO:0002681 - leaf curling, TO:0000564 - spikelet width, TO:0000149 - seed width, TO:0000575 - endosperm related trait	PO:0004001 - bulliform cell 
21850	WTG1	OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1	WIDE AND THICK GRAIN 1	new plant type 1, OTU domain-containing ubiquitin aldehyde-binding protein 1, wide and thick grain 1, otubain 1		npt1, wtg1-1	8	LOC_Os08g42540. a human OTUB1-like deubiquitinase. an otubain-like protease with deubiquitination activity. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os08g0537800	LOC_Os08g42540.2, LOC_Os08g42540.1				GO:0004843 - ubiquitin-specific protease activity, GO:0019784 - NEDD8-specific protease activity, GO:0042127 - regulation of cell proliferation, GO:0005634 - nucleus, GO:0071108 - protein K48-linked deubiquitination, GO:0043130 - ubiquitin binding	TO:0002730 - grain shape, TO:0000447 - filled grain number, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000051 - stem strength, TO:0006032 - panicle size, TO:0002759 - grain number, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0000397 - grain size	PO:0020149 - quiescent center , PO:0009066 - anther , PO:0006079 - shoot meristem , PO:0009010 - seed , PO:0020123 - root cap , PO:0009015 - portion of vascular tissue , PO:0009049 - inflorescence 
21851	BPH31	Bph31	BROWN PLANTHOPPER RESISTANCE 31	BPH resistance 31			3	The BPH31 gene was located on the long arm of chromosome 3 between the markers PA26 and RM2334. The BPH31 locus (475 kb region) contained minimum of 42 candidate genes. Among these, three genes (LOC_Os03g46440, LOC_Os03g46454, and LOC_Os03g46550) might be associated with biotic stress stimulus (Prahalada et al. 2017).	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect, GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
21852	_	OsEXPLA1, EXPLA1, RIP3	_	expansion-like A1, REL1-interacting protein 3		rip3	3	LOC_Os03g04020. Q10S70. TO:0006064: rolled leaf.	 Vegetative organ - Leaf,  Vegetative organ - Culm	Os03g0132200	LOC_Os03g04020.2, LOC_Os03g04020.1				GO:0050793 - regulation of developmental process, GO:0005576 - extracellular region	TO:0000206 - leaf angle, TO:0000207 - plant height	
21853	_	OsJIP-1, JIP-1, OsJIP1, JIP1	_												GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
21854	_	OsJIP-2, JIP-2, OsJIP2, JIP2	_												GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
21855	_	OsJIP-3, JIP-3, OsJIP3, JIP3	_												GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
21856	_	OsJIP-4, JIP-4, OsJIP4, JIP4	_												GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
21857	_	OsJMT, JMT	_												GO:0009695 - jasmonic acid biosynthetic process		
21858	_	EXPA23, OsEXPA23	_	ALPHA-EXPANSIN 23, Expansin-A23, Alpha-expansin-23			2	LOC_Os02g16809. Q4PR43.		Os02g0268400	LOC_Os02g16809.1				GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0005618 - cell wall		
21859	PSE1	OsPSE1, OsPLL1, PLL1	PREMATURE SENESCENCE 1	premature senescence 1, premature senescence1, Pectate lyase-like 1		Ospse1	1	LOC_Os01g36620. PO:0030123: panicle inflorescence.	 Biochemical character,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os01g0546800	LOC_Os01g36620.1				GO:0046872 - metal ion binding, GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity, GO:0009845 - seed germination	TO:0000495 - chlorophyll content, TO:0000397 - grain size, TO:0000592 - 1000-dehulled grain weight, TO:0000180 - spikelet fertility, TO:0001018 - transpiration rate, TO:0000207 - plant height, TO:0001027 - net photosynthetic rate, TO:0000326 - leaf color	PO:0007057 - 0 seed germination stage , PO:0009073 - stigma 
21860	_		_	NAD dependent epimerase/dehydratase family protein			3	LOC_Os03g23980. XB21 interacting protein (XB21IP).		Os03g0355900	LOC_Os03g23980.1						
21861	_		_	Glutaminyl-tRNA synthetase			1	LOC_Os01g09000. XB21 interacting protein (XB21IP).		Os01g0185200	LOC_Os01g09000.1				GO:0004819 - glutamine-tRNA ligase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0016874 - ligase activity, GO:0006425 - glutaminyl-tRNA aminoacylation		
21862	_		_	Beta-D-glucan exohydrolase-like protein			5	LOC_Os05g37700. XB21 interacting protein (XB21IP).		Os05g0449600	LOC_Os05g37700.2, LOC_Os05g37700.1				GO:0016021 - integral to membrane, GO:0008422 - beta-glucosidase activity, GO:0009251 - glucan catabolic process, GO:0005886 - plasma membrane		
21863	_		_	FHA domain containing protein			11	LOC_Os11g03390. XB21 interacting protein (XB21IP).		Os11g0127800	LOC_Os11g03390.2, LOC_Os11g03390.1				GO:0005634 - nucleus, GO:0003729 - mRNA binding		
21864	_		_	peptidyl-tRNA hydrolase			1	LOC_Os01g49900. Q5N9Q7. XB21 interacting protein (XB21IP).	 Biochemical character	Os01g0693900	LOC_Os01g49900.1				GO:0005739 - mitochondrion, GO:0004045 - aminoacyl-tRNA hydrolase activity		
21865	_		_	universal stress protein domain containing protein			7	LOC_Os07g36600. Q5N9Q7. XB21 interacting protein (XB21IP).		Os07g0551400	LOC_Os07g36600.3, LOC_Os07g36600.2, LOC_Os07g36600.1				GO:0006950 - response to stress		
21866	_		_	transmembrane protein 56			3	LOC_Os03g46410. Q5N9Q7. XB21 interacting protein (XB21IP).		Os03g0666700	LOC_Os03g46410.1				GO:0016021 - integral to membrane		
21867	_		_	ABC1 family domain containing protein			7	LOC_Os07g12530. Q5N9Q7. XB21 interacting protein (XB21IP).		Os07g0227800	LOC_Os07g12530.2, LOC_Os07g12530.1				GO:0010287 - plastoglobule		
21868	_	AtpB	_	ATP synthase subunit beta			10	LOC_Os10g21266.	 Biochemical character	Os10g0355800	LOC_Os10g21266.1, LOC_Os10g21264.1				GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0005524 - ATP binding, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0015986 - ATP synthesis coupled proton transport		
21869	_	RPL5	_	ribosomal protein L5, 50 S ribosomal gene RPL5			1	LOC_Os01g17150. GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis.	 Other	Os01g0278900	LOC_Os01g17150.1				GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0005840 - ribosome, GO:0032544 - plastid translation		
21870	_		_	ATPase			3	LOC_Os03g58800.		Os03g0802600	LOC_Os03g58800.1				GO:0005524 - ATP binding		
21871	_	MSH7	_	MutS homolog 7				an MSH6-like protein unique to plants. a plant-specific MutS protein.									
21872	_	OsAMI2, AMI2, OsAMI1, AMI1	_	amidase 2			4	LOC_Os04g02754. OsAMI1 in Wang et al. 2017. 	 Biochemical character	Os04g0117900	LOC_Os04g02754.1				GO:0004040 - amidase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
21873	_	OsAMI1, AMI1	_	AMI1-like protein, Amidase 1			4	LOC_Os04g02780. Q7XTK3.	 Biochemical character	Os04g0118100	LOC_Os04g02780.1				GO:0004040 - amidase activity		
21874	SEU2	OsSEU2	SEUSS 2	OsSEUSS 2			11	a rice homolog of Arabidopsis thaliana SEU (SEUSS).	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0207100	LOC_Os11g10070.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
21875	SEU3	OsSEU3	SEUSS 3	OsSEUSS 3			11	a rice homolog of Arabidopsis thaliana SEU (SEUSS).	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0126000	LOC_Os06g03600.3, LOC_Os06g03600.2, LOC_Os06g03600.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
21876	GCD1	OsGCD1	GAMETE CELLS DEFECTIVE 1	GAMETE CELLS DEFECTIVE1		Osgcd1, osgcd1	1	LOC_Os01g58750. homolog of Arabidopsis GCD1.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0801700 	LOC_Os01g58750.1				GO:0009960 - endosperm development, GO:0010152 - pollen maturation, GO:0007097 - nuclear migration, GO:0009846 - pollen germination, GO:0009555 - pollen development, GO:0009953 - dorsal/ventral pattern formation	TO:0000696 - starch content, TO:0000420 - fertility related trait, TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0007633 - endosperm development stage 
21877	_	OsLIL3, LIL3	_	light-harvesting-like protein 3			2	LOC_Os02g03330. rice ortholog of Arabidopsis LIL3.		Os02g0125700	LOC_Os02g03330.1				GO:0055085 - transmembrane transport, GO:0009535 - chloroplast thylakoid membrane, GO:0022891 - substrate-specific transmembrane transporter activity		
21878	SKOR 	OsSKOR, OsK5.1, K5.1	STELAR K+ OUTWARD RECTIFIER	stelar K+ outward rectifier	STELAR K+ OUTWARD RECTIFIER		4	LOC_Os04g36740. outward Shaker K+ channel. Q7XUW4.	 Biochemical character	Os04g0445000	LOC_Os04g36740.2, LOC_Os04g36740.1				GO:0005249 - voltage-gated potassium channel activity, GO:0042391 - regulation of membrane potential, GO:0005887 - integral to plasma membrane		PO:0020110 - scutellum , PO:0003011 - root vascular system , PO:0009046 - flower 
21879	GORK 	OsGORK, OsK5.2, K5.2	GUARD CELL OUTWARD RECTIFYING K+ CHANNEL	guard cell outward rectifying K+ channel	GUARD CELL OUTWARD RECTIFYING K+ CHANNEL	osk5.2	6	LOC_Os06g14030. outward Shaker K+ channel. Q653P0. GO:0090333: regulation of stomatal closure.	 Biochemical character	Os06g0250600 	LOC_Os06g14030.1				GO:0042391 - regulation of membrane potential, GO:0005249 - voltage-gated potassium channel activity, GO:0010232 - vascular transport, GO:0010118 - stomatal movement, GO:0005887 - integral to plasma membrane	TO:0001017 - water use efficiency	PO:0009046 - flower , PO:0003011 - root vascular system , PO:0002000 - stomatal complex , PO:0000258 - root cortex , PO:0000284 - subsidiary cell , PO:0000293 - guard cell 
21880	HAD1	OsHAD1	HALOACID DEHALOGENASE 1	haloacid dehalogenase 1	HALOACID DEHALOGENASE 1		3	LOC_Os03g61829.  a Haloacid Dehalogenase-Like APase. TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0834050	LOC_Os03g61829.1				GO:0016787 - hydrolase activity, GO:0042594 - response to starvation, GO:0016020 - membrane, GO:0008152 - metabolic process, GO:0003993 - acid phosphatase activity, GO:0005829 - cytosol		
21881	_		_	receptor-like kinase			10	LOC_Os10g04730. an interactive partner of OsHAD.	 Biochemical character	Os10g0136500	LOC_Os10g04730.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
21882	S40		HYBRID STERILITY 40	Hybrid sterility40, Hybrid sterility 40, Hybrid sterility-40		S40i, S40l	1	The S40 locus was delimited to an 80-kb region on the short arm of chromosome 1. ORF5 (LOC_Os01g16730, a ulp1 protein) and ORF8 (LOC_Os01g16810, a R2R3 MYB family transcription factor) were identified as candidate genes for the S40 locus.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	
21883	_		_	ulp1 protein			1	LOC_Os01g16730. Ulp1 protease family. One of the candidate genes for the hybrid sterility gene S40 locus (Chen et al. 2017).	 Biochemical character	Os01g0273900	LOC_Os01g16730.1				GO:0008234 - cysteine-type peptidase activity		
21884	NTP1	OsNTP1	NUCLEOTIDYL TRANSFERASE PROTEIN 1	nucleotidyl transferase protein 1	NUCLEOTIDYL TRANSFERASE PROTEIN 1		1	LOC_Os01g44350.1 	 Biochemical character,  Tolerance and resistance - Stress tolerance		LOC_Os01g44350				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21885	NTP2	OsNTP2	NUCLEOTIDYL TRANSFERASE PROTEIN 2	nucleotidyl transferase protein 2	NUCLEOTIDYL TRANSFERASE PROTEIN 2		1	LOC_Os01g48210.1 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0672700	LOC_Os01g48210.2, LOC_Os01g48210.1				GO:0009414 - response to water deprivation, GO:0006364 - rRNA processing, GO:0070566 - adenylyltransferase activity	TO:0000276 - drought tolerance	
21886	NTP3	OsNTP3	NUCLEOTIDYL TRANSFERASE PROTEIN 3	nucleotidyl transferase protein 3	NUCLEOTIDYL TRANSFERASE PROTEIN 3		1	LOC_Os01g62790.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0846500	LOC_Os01g62790.2, LOC_Os01g62790.1				GO:0009408 - response to heat, GO:0009409 - response to cold	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
21887	NTP4	OsNTP4	NUCLEOTIDYL TRANSFERASE PROTEIN 4	nucleotidyl transferase protein 4	NUCLEOTIDYL TRANSFERASE PROTEIN 4		2	LOC_Os02g02970.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0122100	LOC_Os02g02970.1				GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
21888	NTP5	OsNTP5	NUCLEOTIDYL TRANSFERASE PROTEIN 5	nucleotidyl transferase protein 5	NUCLEOTIDYL TRANSFERASE PROTEIN 5		3	LOC_Os03g11240.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0210800	LOC_Os03g11240.1				GO:0016779 - nucleotidyltransferase activity, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
21889	NTP6	OsNTP6	NUCLEOTIDYL TRANSFERASE PROTEIN 6	nucleotidyl transferase protein 6	NUCLEOTIDYL TRANSFERASE PROTEIN 6		3	LOC_Os03g21850.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0336700	LOC_Os03g21850.2, LOC_Os03g21850.1				GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
21890	NTP7	OsNTP7	NUCLEOTIDYL TRANSFERASE PROTEIN 7	nucleotidyl transferase protein 7	NUCLEOTIDYL TRANSFERASE PROTEIN 7		6	LOC_Os06g45800.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0669275	LOC_Os06g45800.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21891	NTP8	OsNTP8	NUCLEOTIDYL TRANSFERASE PROTEIN 8	nucleotidyl transferase protein 8	NUCLEOTIDYL TRANSFERASE PROTEIN 8		7	LOC_Os07g48170.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0679400	LOC_Os07g48170.1				GO:0009651 - response to salt stress, GO:0009408 - response to heat	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
21892	NTP9	OsNTP9	NUCLEOTIDYL TRANSFERASE PROTEIN 9	nucleotidyl transferase protein 9	NUCLEOTIDYL TRANSFERASE PROTEIN 9		8	LOC_Os08g44560.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0559900	LOC_Os08g44560.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21893	NTP11	OsNTP11	NUCLEOTIDYL TRANSFERASE PROTEIN 11	nucleotidyl transferase protein 11	NUCLEOTIDYL TRANSFERASE PROTEIN 11		11	LOC_Os11g02320.2	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0114700	LOC_Os11g02320.3, LOC_Os11g02320.2, LOC_Os11g02320.1				GO:0016740 - transferase activity, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
21894	NTP12	OsNTP12	NUCLEOTIDYL TRANSFERASE PROTEIN 12	nucleotidyl transferase protein 12	NUCLEOTIDYL TRANSFERASE PROTEIN 12		12	LOC_Os12g02260.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0114200	LOC_Os12g02260.2, LOC_Os12g02260.1				GO:0009409 - response to cold, GO:0016740 - transferase activity	TO:0000303 - cold tolerance	
21895	NTP13	OsNTP13	NUCLEOTIDYL TRANSFERASE PROTEIN 13	nucleotidyl transferase protein 13	NUCLEOTIDYL TRANSFERASE PROTEIN 13		12	LOC_Os12g18530.1 PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0283100	LOC_Os12g18530.1				GO:0016740 - transferase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009049 - inflorescence 
21896	_		_				2	LOC_Os02g07960. targeted by OS_AGO1_sRNA843 (Qin et al. 2017).	 Biochemical character	Os02g0176100	LOC_Os02g07960.4, LOC_Os02g07960.3, LOC_Os02g07960.2				GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0007166 - cell surface receptor linked signal transduction		
21897	_	OsWee1, Wee1	_	wall-associated receptor-like protein kinase, cell cycle-associated protein kinase OsWee1			2	KX758541. targeted by OS_AGO1_sRNA288 (Qin et al. 2017). rice ortholog of fission yeast (S. pombe) Wee1.	 Biochemical character	Os02g0632100	LOC_Os02g42110.1				GO:0051782 - negative regulation of cell division, GO:0000320 - re-entry into mitotic cell cycle, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0016021 - integral to membrane, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
21898	GINT2	OsGINT2	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 2	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE2	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 2		3	LOC_Os03g48010. targeted by osa-miR818 (Qin et al. 2017).	 Biochemical character	Os03g0684500	LOC_Os03g48010.1				GO:0009651 - response to salt stress, GO:0009845 - seed germination, GO:0030259 - lipid glycosylation, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane, GO:0006486 - protein amino acid glycosylation, GO:0009737 - response to abscisic acid stimulus		
21899	_		_				4	LOC_Os04g02620. targeted by OS_AGO1_sRNA296 (Qin et al. 2017).		Os04g0116600	LOC_Os04g02620.1				GO:0016021 - integral to membrane		
21900	_		_	protein kinase			6	LOC_Os06g13320. targeted by OS_AGO1_sRNA304 and OS_AGO1_sRNA495 (Qin et al. 2017).	 Biochemical character	Os06g0241100	LOC_Os06g13320.1				GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
21901	_		_	DRD1 protein			7	LOC_Os07g25390. targeted by OS_AGO1_sRNA672 (Qin et al. 2017).	 Biochemical character	Os07g0434500	LOC_Os07g25390.1				GO:0005524 - ATP binding		
21902	_		_				11	LOC_Os11g36160. targeted by osa-miR159 (Qin et al. 2017).	 Biochemical character	Os11g0569600	LOC_Os11g36160.2, LOC_Os11g36160.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
21903	_		_	protein kinase			7	LOC_Os07g04820. targeted by OS_AGO1_sRNA302, OS_AGO1_sRNA304 and OS_AGO1_sRNA495 (Qin et al. 2017).	 Biochemical character		LOC_Os07g04820						
21904	_		_				6	LOC_Os06g03830. targeted by osa-miR167 and OS_AGO1_sRNA193 (Qin et al. 2017).		Os06g0129100	LOC_Os06g03830.2, LOC_Os06g03830.1				GO:0016491 - oxidoreductase activity		
21905	_	AKR4C15	_	Aldo-Keto Reductase 4 subfamily C member 15, Aldo-Keto Reductase 4C15			5	KT004547.	 Biochemical character	Os05g0456300	LOC_Os05g38230.3, LOC_Os05g38230.2, LOC_Os05g38230.1				GO:0008106 - alcohol dehydrogenase (NADP+) activity, GO:0016491 - oxidoreductase activity		
21906	ARK4	OsARK4	ALDO/KETO REDUCTASE 4	Aldo-Keto Reductase, aldo/keto reductase 4	ALDO/KETO REDUCTASE 4		4	A2XRZ0 (indica). Q7XT99 (japonica).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0338000	LOC_Os04g26910.1				GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0016491 - oxidoreductase activity	TO:0000259 - heat tolerance	
21907	CWZF3	OsCW-ZF3, CW-ZF3	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 3 	cysteine-tryptophan-domain containing zinc finger protein on chromosome 3, CW-domain containing zinc finger protein 3, CW-domain containing protein 3	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 3		3	LOC_Os03g22580. PO:0030123: panicle inflorescence.		Os03g0347300	LOC_Os03g22580.2, LOC_Os03g22580.1				GO:0005634 - nucleus, GO:0035064 - methylated histone residue binding, GO:0008270 - zinc ion binding		
21908	CWZF5	OsCW-ZF5, CW-ZF5	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 5	cysteine-tryptophan-domain containing zinc finger protein on chromosome 5, CW-domain containing zinc finger protein 5, CW-domain containing protein 5	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 5		5	LOC_Os05g30790. PO:0030123: panicle inflorescence.		Os05g0371100	LOC_Os05g30790.1				GO:0005634 - nucleus, GO:0035064 - methylated histone residue binding, GO:0008270 - zinc ion binding		
21909	CWZF7	OsCW-ZF7, CW-ZF7	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 7	cysteine-tryptophan-domain containing zinc finger protein on chromosome 7, CW-domain containing zinc finger protein 7, CW-domain containing protein 7	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 7	Oscw-zf7, Oscw-zf7-2	7	LOC_Os07g47360. PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0669800	LOC_Os07g47360.3, LOC_Os07g47360.2, LOC_Os07g47360.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0035064 - methylated histone residue binding	TO:0000072 - awn length	
21910	CWZF6	OsCW-ZF6, CW-ZF6	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 6	cysteine-tryptophan-domain containing zinc finger protein on chromosome 6, CW-domain containing zinc finger protein 6, CW-domain containing protein 6	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 6		6	LOC_Os06g41710. OsCW-ZF6 had a premature stop codon (Zhang et al. 2017). 		Os06g0622000	LOC_Os06g41710.1				GO:0008270 - zinc ion binding		
21911	PPR6	OsPPR6	PENTATRICOPEPTIDE REPEAT PROTEIN 6	pentatricopeptide repeat protein 6	PENTATRICOPEPTIDE REPEAT PROTEIN 6	osppr6	5	LOC_Os05g49920.1	 Biochemical character	Os05g0574800 	LOC_Os05g49920.1				GO:0008380 - RNA splicing, GO:0010027 - thylakoid membrane organization, GO:0009416 - response to light stimulus, GO:0008270 - zinc ion binding, GO:0040007 - growth, GO:0003723 - RNA binding, GO:0009451 - RNA modification, GO:0009507 - chloroplast, GO:0043231 - intracellular membrane-bounded organelle, GO:0004519 - endonuclease activity, GO:0009658 - chloroplast organization		
21913	_		_	UDP-glucose 6-dehydrogenase			12	LOC_Os12g25700. Q2QS13.	 Biochemical character	Os12g0443600	LOC_Os12g25700.3, LOC_Os12g25700.2, LOC_Os12g25700.1				GO:0005634 - nucleus, GO:0051287 - NAD or NADH binding, GO:0003979 - UDP-glucose 6-dehydrogenase activity, GO:0006024 - glycosaminoglycan biosynthetic process, GO:0006065 - UDP-glucuronate biosynthetic process, GO:0005829 - cytosol		
21914	_		_	beta-hexosaminidase			5	LOC_Os05g02510. GO:0102148: N-acetyl-beta-D-galactosaminidase activity. GO:0005975: carbohydrate metabolic process.	 Biochemical character	Os05g0115900	LOC_Os05g02510.1				GO:0004563 - beta-N-acetylhexosaminidase activity, GO:0009505 - plant-type cell wall, GO:0005773 - vacuole, GO:0005829 - cytosol		
21915	PTR9	OsPTR9 OsNPF8.20, NPF8.20	PROTEIN TRANSPORTER 9	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.20	PROTEIN TRANSPORTER 9	osptr9	6	LOC_Os06g49250.1	 Biochemical character,  Character as QTL - Yield and productivity	Os06g0706400	LOC_Os06g49250.5, LOC_Os06g49250.4, LOC_Os06g49250.3, LOC_Os06g49250.2, LOC_Os06g49250.1				GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0060359 - response to ammonium ion, GO:0005215 - transporter activity, GO:0009416 - response to light stimulus	TO:0000346 - tiller number, TO:0002673 - amino acid content, TO:0000152 - panicle number, TO:0000325 - soluble protein content, TO:0000075 - light sensitivity, TO:0000440 - grain number per plant, TO:0000447 - filled grain number, TO:0000396 - grain yield, TO:0001027 - net photosynthetic rate, TO:0000457 - total biomass yield	
21916	_	GL4, GL4/ObSH4, SH4	_	grain length on chromosome 4, GRAIN LENGTH 4		Oggl4	4	African rice (Oryza glaberrima, Oryza barthii) gene. ORGLA04G0254300. KY427262 (GL4 in Oryza barthii cultivar W1411), KY427263 (truncated GL4 in Oryza glaberrima cultivar irgc102305). TO:0000930: seed shattering.	 Seed - Morphological traits,  Character as QTL - Yield and productivity							TO:0000391 - seed size	
21917	GPAT3	OsGPAT3	GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3 	Glycerol-3-Phosphate Acyltransferase 3	GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3 	osgpat3, gpat3-2, gpat3-3, gpat3-4	11	LOC_Os11g45400. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity. TO:1000022: anther morphology trait. TO:0000602: total fat content.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0679700 	LOC_Os11g45400.1				GO:0046890 - regulation of lipid biosynthetic process, GO:0010152 - pollen maturation, GO:0043067 - regulation of programmed cell death, GO:0010584 - pollen exine formation, GO:0009555 - pollen development, GO:0005783 - endoplasmic reticulum, GO:0048653 - anther development, GO:0016791 - phosphatase activity, GO:0010143 - cutin biosynthetic process, GO:0016311 - dephosphorylation, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0016746 - transferase activity, transferring acyl groups, GO:0008152 - metabolic process	TO:0000437 - male sterility, TO:0000392 - sterility or fertility trait, TO:0000187 - anther color, TO:0000602 - total fat content, TO:0000245 - pollen free	PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009071 - anther wall tapetum , PO:0020048 - microspore 
21918	ERANT1	ER-ANT1	ENDOPLASMIC RETICULUM-LOCALIZED ADENINE NUCLEOTIDE TRANSPORTER 1	endoplasmic reticulum-localized adenine nucleotide transporter1, endoplasmic reticulum-localized adenine nucleotide transporter 1	ENDOPLASMIC RETICULUM-LOCALIZED ADENINE NUCLEOTIDE TRANSPORTER 1	er-ant1	11	LOC_Os11g43960.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0661300	LOC_Os11g43960.1				GO:0016021 - integral to membrane, GO:0045333 - cellular respiration, GO:0034976 - response to endoplasmic reticulum stress, GO:0009853 - photorespiration, GO:0048316 - seed development, GO:0048364 - root development, GO:0048367 - shoot development, GO:0005471 - ATP:ADP antiporter activity, GO:0005743 - mitochondrial inner membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0005986 - sucrose biosynthetic process, GO:0007623 - circadian rhythm, GO:0009745 - sucrose mediated signaling, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0046902 - regulation of mitochondrial membrane permeability		
21919	_	PM-ANT	_	plasma membrane-localized adenine nucleotide transporter			5	LOC_Os05g46220.	 Biochemical character	Os05g0539600	LOC_Os05g46220.1				GO:0046902 - regulation of mitochondrial membrane permeability, GO:0005471 - ATP:ADP antiporter activity, GO:0016021 - integral to membrane, GO:0005743 - mitochondrial inner membrane		
21920	PIHK1	Pi-hk1	PYRICULARIA ORYZAE RESISTANCE HK1	Pyricularia oryzae resistance-hk1, Magnaporthe grisea resistance-hk1, Blast resistance hk1			11	Pi-hk1 was finally mapped to a 107-kb region between molecular markers P3586 and ILP3, and co-segregated with the markers P4098, RM7654, and P4099. five genes (Os11g0682600, Os11g0683600, Os11g0684000, Os11g0684100 and Os11g0684200), including three encoded NBS-LRR dis- ease resistance proteins, might be considered to be the candidates of the Pi-hk1 gene. 	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
21921	PIHK2	Pi-hk2	PYRICULARIA ORYZAE RESISTANCE HK2	Pyricularia oryzae resistance-hk2, Magnaporthe grisea resistance-hk2, Blast resistance hk2			9	Pi-hk2 was finally mapped to a 143-kb region between ILP-19 and RM24048. Two genes: LOC_Os09g16510 (WRKY74) and LOC_Os09g16560 (hypothetical protein) might be the candidates of gene Pi-hk2 (He et all 2017).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
21922	_		_	OsMPH1 homologue			2	LOC_Os02g07170.		Os02g0168200	LOC_Os02g07170.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
21923	_		_	OsMPH1 homologue			3	LOC_Os03g03760.		Os03g0129800	LOC_Os03g03760.1, LOC_Os03g03750.1, LOC_Os03g03730.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
21924	_		_	OsMPH1 homologue			4	LOC_Os04g47890.		Os04g0566600	LOC_Os04g47890.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
21925	_		_	OsMPH1 homologue			10	LOC_Os10g39550.		Os10g0541500	LOC_Os10g39550.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
21926	_		_	OsMPH1 homologue			11	LOC_Os11g01480.		Os11g0106100	LOC_Os11g01480.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
21927	_		_	wall-associated receptor-like protein kinase, wall-associated RLK, WAK RLK			2	LOC_Os02g42150.		Os02g0632800	LOC_Os02g42150.2, LOC_Os02g42150.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0007166 - cell surface receptor linked signal transduction		
21928	_		_	wall-associated receptor-like protein kinase, wall-associated RLK, WAK RLK			4	LOC_Os04g51030.		Os04g0598800	LOC_Os04g51030.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0030247 - polysaccharide binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding		
21929	DTC1		DEFECTIVE TAPETUM CELL DEATH 1	Defective Tapetum Cell Death 1		dtc1, dtc1-1, dtc1-2	7	LOC_Os07g35610. GO:2000377: regulation of reactive oxygen species metabolic process. GO:0097468: programmed cell death in response to reactive oxygen species.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0540366	LOC_Os07g35610.1				GO:0010152 - pollen maturation, GO:0009556 - microsporogenesis, GO:0005829 - cytosol, GO:0048653 - anther development	TO:0000437 - male sterility	PO:0001004 - anther development stage 
21930	TDF1	OsTDF1, MYB35	DEFECTIVE IN TAPETAL DEVELOPMENT AND FUNCTION 1	DEFECTIVE in TAPETAL DEVELOPMENT and FUNCTION1			3	LOC_Os03g18480. an ortholog of Arabidopsis TDF1. GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding. GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting. GO:0044212: transcription regulatory region DNA binding.		Os03g0296000	LOC_Os03g18480.1				GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0048658 - tapetal layer development, GO:0048653 - anther development, GO:0043565 - sequence-specific DNA binding		PO:0001004 - anther development stage 
21931	_		_	Extensin family protein			6	LOC_Os06g08190.1		Os06g0180100	LOC_Os06g08190.1						
21932	_		_	Extensin family protein			1	LOC_Os01g07060.1		Os01g0164300	LOC_Os01g07060.1						
21933	_		_	Extensin family protein			3	LOC_Os03g14615.1		Os03g0250301	LOC_Os03g14615.1						
21934	_		_	Extensin family protein			1	LOC_Os01g53640.1		Os01g0738300	LOC_Os01g53640.1				GO:0006468 - protein amino acid phosphorylation, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
21935	_		_	Extensin family protein			1	LOC_Os01g02040.1		Os01g0110500	LOC_Os01g02040.2, LOC_Os01g02040.1				GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction		
21936	_		_	Extensin family protein			6	LOC_Os06g29340.1		Os06g0488050	LOC_Os06g29340.1				GO:0003779 - actin binding, GO:0016459 - myosin complex, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0003774 - motor activity		
21937	_		_	Extensin family protein			1	LOC_Os01g20780.1		Os01g0309100	LOC_Os01g20780.1						
21938	_		_	Extensin family protein			1	LOC_Os01g54700.1		Os01g0750600	LOC_Os01g54700.1				GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
21939	_		_	Extensin family protein			5	LOC_Os05g47940.1		Os05g0552600	LOC_Os05g47940.1						
21940	_		_	Extensin family protein			11	LOC_Os11g05935.1		Os11g0157701	LOC_Os11g05935.1				GO:0016021 - integral to membrane		
21941	_		_	Extensin family protein			3	LOC_Os03g07640.1			LOC_Os03g07640				GO:0004869 - cysteine-type endopeptidase inhibitor activity		
21942	_		_	Extensin family protein			6	LOC_Os06g07220.1		Os06g0168700	LOC_Os06g07220.1						
21943	_		_	Extensin family protein			1	LOC_Os01g45700.1		Os01g0644600	LOC_Os01g45700.1						
21944	_		_	Extensin family protein			2	LOC_Os02g26160.1		Os02g0459600	LOC_Os02g26160.2, LOC_Os02g26160.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0042742 - defense response to bacterium, GO:0002229 - defense response to oomycetes, GO:0016021 - integral to membrane, GO:0030246 - carbohydrate binding		
21945	_		_	Extensin family protein			1	LOC_Os01g25460.1		Os01g0356900	LOC_Os01g25460.1						
21946	_		_	Extensin family protein			6	LOC_Os06g49100.1		Os06g0704500	LOC_Os06g49100.1						
21947	_		_	Extensin family protein			1	LOC_Os01g41120.1		Os01g0594300	LOC_Os01g41120.1						
21948	_		_	Extensin family protein			11	LOC_Os11g43640.1		Os11g0657400	LOC_Os11g43640.1						
21949	_		_	Extensin family protein			1	LOC_Os01g67390.1		Os01g0899700	LOC_Os01g67390.1						
21950	_		_	Extensin family protein			1	LOC_Os01g08470.1		Os01g0180000	LOC_Os01g08470.1						
21951	_		_	O-glucosyltransferase 2			8	LOC_Os08g07180. 	 Biochemical character		LOC_Os08g07180						
21952	_		_				6	LOC_Os06g44930. 		Os06g0659800	LOC_Os06g44930.1						
21953	FSD1.1 	OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1	FE-DEPENDENT SUPEROXIDE DISMUTASE 1.1	Fe-dependent SOD 1.1, Fe-dependent superoxide dismutase 1.1	FE-DEPENDENT SUPEROXIDE DISMUTASE 1.1		6	LOC_Os06g02500. Q5VRL3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0115400	LOC_Os06g02500.1				GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0046688 - response to copper ion, GO:0004784 - superoxide dismutase activity	TO:0000021 - copper sensitivity, TO:0006001 - salt tolerance	
21954	_	OsCDGSH, CDGSH	_				7	Fe-sulfur domain-contain protein. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0467200	LOC_Os07g28400.1				GO:0046688 - response to copper ion, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0010150 - leaf senescence, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0055072 - iron ion homeostasis	TO:0000021 - copper sensitivity	
21955	_		_	M50 family peptidase			3	LOC_Os03g51920. Q851F9.	 Biochemical character	Os03g0729000	LOC_Os03g51920.1				GO:0016021 - integral to membrane, GO:0008237 - metallopeptidase activity, GO:0009408 - response to heat, GO:0009644 - response to high light intensity, GO:0042542 - response to hydrogen peroxide, GO:0031969 - chloroplast membrane		
21956	CHX15	OsCHX15	CATION/H+ EXCHANGER  15	Cation proton exchanger, cation/H+ exchanger  15	CATION/H+ EXCHANGER  15		12		 Biochemical character	Os12g0616500	LOC_Os12g42200.1				GO:0015672 - monovalent inorganic cation transport, GO:0016021 - integral to membrane, GO:0006885 - regulation of pH, GO:0012505 - endomembrane system, GO:0015299 - solute:hydrogen antiporter activity		
21957	_		_	Aspartate-semialdehyde dehydrogenase			3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0760700	LOC_Os03g55280.1				GO:0009651 - response to salt stress, GO:0005739 - mitochondrion, GO:0004073 - aspartate-semialdehyde dehydrogenase activity, GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity, GO:0051287 - NAD or NADH binding, GO:0050661 - NADP or NADPH binding, GO:0046983 - protein dimerization activity, GO:0009097 - isoleucine biosynthetic process, GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0009086 - methionine biosynthetic process, GO:0009088 - threonine biosynthetic process, GO:0009570 - chloroplast stroma	TO:0006001 - salt tolerance	
21958	_		_	1-Aminocyclopropane-1-carboxylic acid oxidase			6		 Biochemical character	Os06g0573900	LOC_Os06g37590.1				GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity		
21959	_		_	Autophagy-related; C-terminal domain-containing protein			6	GO:0044804: autophagy of nucleus.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0267600	LOC_Os06g15700.1				GO:0000422 - mitochondrion degradation, GO:0000045 - autophagic vacuole formation, GO:0030242 - peroxisome degradation, GO:0019898 - extrinsic to membrane, GO:0000407 - pre-autophagosomal structure, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21960	_		_	FYVE finger-containing phosphoinositide kinase			7		 Tolerance and resistance - Stress tolerance	Os07g0573300	LOC_Os07g38580.1				GO:0009651 - response to salt stress, GO:0046872 - metal ion binding	TO:0006001 - salt tolerance	
21961	_		_	thiol-disulphide oxidoreductase DCC family protein			4		 Biochemical character	Os04g0668800	LOC_Os04g57310.2, LOC_Os04g57310.1				GO:0005739 - mitochondrion, GO:0015035 - protein disulfide oxidoreductase activity, GO:0042246 - tissue regeneration		
21962	_		_	CDK5RAP1-like protein			11	Q2R1U4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0592800	LOC_Os11g38030.1				GO:0005737 - cytoplasm, GO:0006400 - tRNA modification, GO:0009651 - response to salt stress, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0016740 - transferase activity	TO:0006001 - salt tolerance	
21963	_		_	Potassium channel tetramerisation domain-containing protein 9			10			Os10g0438000	LOC_Os10g30190.1				GO:0051260 - protein homooligomerization		
21964	_	EP	_	Expressed protein			5	LOC_Os05g08980. EP can be used reliably for quantitating the expression of genes involved in abiotic stress responses (Maksup et al. 2013).		Os05g0182700	LOC_Os05g08980.4, LOC_Os05g08980.3, LOC_Os05g08980.2, LOC_Os05g08980.1						
21965	_	HNR27C, HNR	_	Heterogeneous nuclear ribonucleoprotein 27C			1	LOC_Os01g71770. HNR can be used reliably for quantitating the expression of genes involved in abiotic stress responses (Maksup et al. 2013).		Os01g0945800	LOC_Os01g71770.1				GO:0003723 - RNA binding		
21966	_	TBC22A, TBC	_	TBC1 domain family member 22A			9	LOC_Os09g34040. TBC can be used reliably for quantitating the expression of genes involved in abiotic stress responses (Maksup et al. 2013). GO:0090630: activation of GTPase activity.		Os09g0515800	LOC_Os09g34040.1				GO:0005096 - GTPase activator activity, GO:0005622 - intracellular, GO:0006886 - intracellular protein transport, GO:0012505 - endomembrane system, GO:0017137 - Rab GTPase binding, GO:0031338 - regulation of vesicle fusion		
21967	_	GL6	_	glabrous 6			6	The GL6 gene was fine mapped in the interval between InDel-106 and InDel-115 at genetic distances of 0.3 and 0.1 cM, respectively. Seven annotated genes (japonica) including an AP2 domain-contain- ing protein (LOC_Os06g44750) and a PPR domain-containing protein (LOC_Os06g44820) were present. (Zeng et al. 2013)	 Vegetative organ - Leaf							TO:0002722 - leaf pubescence	
21968	_		_	Putative cysteine synthase			6		 Tolerance and resistance - Stress tolerance	Os06g0564400	LOC_Os06g36830.1				GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
21969	_		_	Probable serine acetyltransferase 3			3	Q0DUI1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0185000	LOC_Os03g08660.1				GO:0009001 - serine O-acetyltransferase activity, GO:0006535 - cysteine biosynthetic process from serine, GO:0005829 - cytosol, GO:0046688 - response to copper ion, GO:0019344 - cysteine biosynthetic process	TO:0000021 - copper sensitivity	
21970	_		_	Thioredoxin-like 3-3			4	Q7XSQ7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0560200	LOC_Os04g47260.1				GO:0005737 - cytoplasm, GO:0046688 - response to copper ion, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0015035 - protein disulfide oxidoreductase activity, GO:0047134 - protein-disulfide reductase activity, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0045454 - cell redox homeostasis, GO:0034599 - cellular response to oxidative stress, GO:0006662 - glycerol ether metabolic process	TO:0000021 - copper sensitivity	
21971	_		_	Mannan endo-1, 4-beta-mannosidase 7			11	Q2RBB1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0118200	LOC_Os11g02600.1				GO:0005975 - carbohydrate metabolic process, GO:0046688 - response to copper ion, GO:0016985 - mannan endo-1,4-beta-mannosidase activity, GO:0046355 - mannan catabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000021 - copper sensitivity	
21972	_	OsSK31/OsGSK9, OsSK31, OsGSK9, SK31, GSK9	_	GSK3/SHAGGY-Like Kinase 31, GSK3-like Kinase 9			10	LOC_Os10g37740. Serine/threonine protein kinase. a GSK3/SHAGGY-like kinase clade III member. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0521700	LOC_Os10g37740.1				GO:0004674 - protein serine/threonine kinase activity, GO:0046688 - response to copper ion, GO:0005524 - ATP binding	TO:0000021 - copper sensitivity	
21973	_		_	Putative 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase			12	Q2QLY4. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0624000	LOC_Os12g42884.3, LOC_Os12g42884.2, LOC_Os12g42884.1				GO:0005829 - cytosol, GO:0046688 - response to copper ion, GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, GO:0008705 - methionine synthase activity, GO:0008270 - zinc ion binding, GO:0050667 - homocysteine metabolic process, GO:0005576 - extracellular region	TO:0000021 - copper sensitivity	
21974	_		_	putative glutathione S-transferase			3	AAN05496. 	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0006749 - glutathione metabolic process, GO:0046688 - response to copper ion, GO:0004364 - glutathione transferase activity, GO:0005737 - cytoplasm	TO:0000021 - copper sensitivity	
21975	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g19390. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os01g0299300	LOC_Os01g19390.1				GO:0016021 - integral to membrane, GO:0016791 - phosphatase activity, GO:0010143 - cutin biosynthetic process, GO:0016311 - dephosphorylation, GO:0016020 - membrane		
21976	_	GPAT	_	glycerol-3-phosphate acyltransferase			10	LOC_Os10g41070. 	 Biochemical character	Os10g0560100	LOC_Os10g41070.1				GO:0016746 - transferase activity, transferring acyl groups, GO:0016021 - integral to membrane, GO:0008152 - metabolic process		
21977	_	GPAT	_	glycerol-3-phosphate acyltransferase			5	LOC_Os05g20100. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os05g0280500	LOC_Os05g20100.1				GO:0016791 - phosphatase activity, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation		
21978	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g22560. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os01g0329000	LOC_Os01g22570.1, LOC_Os01g22560.1				GO:0016791 - phosphatase activity, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation		
21979	_	GPAT	_	glycerol-3-phosphate acyltransferase			12	LOC_Os12g37600. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os12g0563000	LOC_Os12g37600.1				GO:0016311 - dephosphorylation, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016791 - phosphatase activity		
21980	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g44069. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os01g0631400	LOC_Os01g44069.1				GO:0016791 - phosphatase activity, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016311 - dephosphorylation, GO:0016021 - integral to membrane		
21981	_	GPAT	_	glycerol-3-phosphate acyltransferase			8	LOC_Os08g03700. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os08g0131300	LOC_Os08g03700.1				GO:0016746 - transferase activity, transferring acyl groups, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation, GO:0016791 - phosphatase activity, GO:0008152 - metabolic process		
21982	_	GPAT, OsGPAT	_	glycerol-3-phosphate acyltransferase			5	LOC_Os05g38350. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os05g0457800	LOC_Os05g38350.1				GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation, GO:0016791 - phosphatase activity		
21983	_	GPAT	_	glycerol-3-phosphate acyltransferase			10	LOC_Os10g27330. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os10g0413400	LOC_Os10g27330.1				GO:0016746 - transferase activity, transferring acyl groups, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation, GO:0016791 - phosphatase activity, GO:0008152 - metabolic process		
21984	_	GPAT	_	glycerol-3-phosphate acyltransferase			3	LOC_Os03g52570. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os03g0735900	LOC_Os03g52570.1				GO:0016746 - transferase activity, transferring acyl groups, GO:0016791 - phosphatase activity, GO:0016311 - dephosphorylation, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0010143 - cutin biosynthetic process, GO:0008152 - metabolic process		
21985	_	GPAT	_	glycerol-3-phosphate acyltransferase			2	LOC_Os02g02340. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os02g0114400	LOC_Os02g02340.1				GO:0016020 - membrane, GO:0016311 - dephosphorylation, GO:0016021 - integral to membrane, GO:0010143 - cutin biosynthetic process, GO:0016791 - phosphatase activity		
21986	_	GPAT	_	glycerol-3-phosphate acyltransferase			5	LOC_Os05g37600.	 Biochemical character	Os05g0448300	LOC_Os05g37600.1				GO:0008152 - metabolic process, GO:0016746 - transferase activity, transferring acyl groups		
21987	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g63580. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os01g0855000	LOC_Os01g63580.1				GO:0016311 - dephosphorylation, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016791 - phosphatase activity		
21988	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g14900. 	 Biochemical character		LOC_Os01g14900						
21989	_	PR5	_				12										
21990	_	EIP2	_	EBR1-interacting protein 2			9	LOC_Os09g39260.	 Biochemical character	Os09g0566000	LOC_Os09g39260.1				GO:0009507 - chloroplast, GO:0047769 - arogenate dehydratase activity, GO:0009094 - L-phenylalanine biosynthetic process, GO:0009570 - chloroplast stroma		
21991	_	EIP3	_	EBR1-interacting protein 3			9	LOC_Os09g39230.	 Biochemical character	Os09g0565700 	LOC_Os09g39230.1				GO:0009570 - chloroplast stroma, GO:0009094 - L-phenylalanine biosynthetic process, GO:0009507 - chloroplast, GO:0047769 - arogenate dehydratase activity		
21992	_	EIP4	_	EBR1-interacting protein 4			2	LOC_Os02g25840.		Os02g0456000 	LOC_Os02g25840.1				GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER, GO:0007030 - Golgi organization, GO:0048213 - Golgi vesicle prefusion complex stabilization, GO:0000301 - retrograde transport, vesicle recycling within Golgi, GO:0017119 - Golgi transport complex		
21993	_	EIP6	_	EBR1-interacting protein 6			9	LOC_Os09g39560.	 Biochemical character	Os09g0569100 	LOC_Os09g39560.1				GO:0043621 - protein self-association, GO:0016791 - phosphatase activity, GO:0006468 - protein amino acid phosphorylation, GO:0009231 - riboflavin biosynthetic process, GO:0005737 - cytoplasm		
21994	_	EIP7	_	EBR1-interacting protein 7			2	LOC_Os02g09180.		Os02g0184500 	LOC_Os02g09180.1						
21995	_	EIP8, OsVOZ1, VOZ1	_	EBR1-interacting protein 8, vascular one zinc-finger 1			1	LOC_Os01g54930. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance	Os01g0753000 	LOC_Os01g54930.1				GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000175 - bacterial blight disease resistance	
21996	_	EIP10	_	EBR1-interacting protein 10			1	LOC_Os01g60440.		Os01g0819900 	LOC_Os01g60440.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
21997	_	EIP11	_	EBR1-interacting protein 11			8	LOC_Os08g37130.		Os08g0476300 	LOC_Os08g37130.1						
21998	_		_	Acyl desaturase			1	Q8LJJ9. B8A7A3. rice ortholog of stearoyl-acyl carrier protein 9-desaturase 6 gene. GO:0102786: stearoyl-[acp] desaturate activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0880800 	LOC_Os01g65830.1				GO:0046872 - metal ion binding, GO:0001666 - response to hypoxia, GO:0006633 - fatty acid biosynthetic process, GO:0009507 - chloroplast, GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity		
21999	CFBP2	OscFBP2, cFBP2	CYTOSOLIC FRUCTOSE-1,6-BIPHOSPHATE 2	"FBPase, \" fructose-1, 6-bisphosphatase\", \"cytosolic fructose-1, 6-biphosphate 2\", \"cytosolic fructose 1, 6-bisphosphatase2\""	CYTOSOLIC FRUCTOSE-1,6-BIPHOSPHATE 2	oscfbp2-m1, oscfbp2-m2	5		 Biochemical character	Os05g0438600	LOC_Os05g36270.1, LOC_Os05g36270.2, LOC_Os05g36270.3				GO:0060359 - response to ammonium ion, GO:0009750 - response to fructose stimulus, GO:0005983 - starch catabolic process, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0005986 - sucrose biosynthetic process, GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0030388 - fructose 1,6-bisphosphate metabolic process, GO:0006002 - fructose 6-phosphate metabolic process, GO:0006000 - fructose metabolic process, GO:0006094 - gluconeogenesis, GO:0015979 - photosynthesis, GO:0009737 - response to abscisic acid stimulus	TO:0000346 - tiller number, TO:0000328 - sucrose content	PO:0000071 - companion cell 
22000	_	SnRK1	_	SnRK1 subfamily protein, SNF1-related protein kinase 1 subfamily protein			2	GO:0035556: intracellular signal transduction.	 Biochemical character	Os02g0178000	LOC_Os02g08140.1				GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm		
22001	_	SnRK2	_	SnRK2 subfamily protein, SNF1-related protein kinase 2 subfamily protein			4			Os04g0629300	LOC_Os04g53720.1				GO:0046872 - metal ion binding, GO:0005737 - cytoplasm, GO:0005524 - ATP binding		
22002	_	BiP3	_	IgG binding protein 3, ER stress-related gene BiP3			6			Os06g0212900	LOC_Os06g10990.1				GO:0005524 - ATP binding		
22003	_	SEC61	_				9			Os09g0347700	LOC_Os09g17840.1				GO:0015031 - protein transport, GO:0016021 - integral to membrane		
22004	_		_	PGR5-like protein 1a, proton gradient regulation-5 like protein 1a			3			Os03g0857400	LOC_Os03g64020.2, LOC_Os03g64020.1				GO:0016021 - integral to membrane		
22005	LH1		LATE HEADING 1	late heading 1			7	LH1 was confined to the 63.7-kb region flanked by the SSR markers RM5436 and RM8034. candidate genes: LOC_Os7g15570, LOC_Os07g15600 and LOC_Os7g15640.	 Reproductive organ - Heading date						GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time	
22006	LH2		LATE HEADING 2	late heading 2			8	LH2 was mapped between Indel22468-3 and RM25 with a physical distance of 177 kb. candidate genes: LOC_Os08g07660, LOC_Os08g07730 and LOC_Os08g07810.	 Reproductive organ - Heading date						GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time	
22007	PME11	PME11, OsPME11	PECTIN METHYLESTERASE 11	pectin methylesterase 11	PECTIN METHYLESTERASE 11		2	LOC_Os02g46310.	 Biochemical character	Os02g0688400	LOC_Os02g46310.1				GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045490 - pectin catabolic process		
22008	PMEI1	PMEI-1	PECTIN METHYLESTERASE INHIBITOR 1	PME inhibitor 1, pectin methylesterase inhibitor 1	PECTIN METHYLESTERASE INHIBITOR 1		1	LOC_Os01g02070.	 Biochemical character	Os01g0111000	LOC_Os01g02070.1				GO:0004857 - enzyme inhibitor activity		
22009	JMT2	JMT-2, OsJMT-2, OsJMT2	JASMONIC ACID CARBOXY METHYL TRANSFERASE 2	JA carboxy methyl transferase 2, jasmonic acid carboxy methyl transferase 2	JASMONIC ACID CARBOXY METHYL TRANSFERASE 2		2	LOC_Os02g48770 	 Biochemical character	Os02g0719600	LOC_Os02g48770.1				GO:0008168 - methyltransferase activity		
22010	JMT1	JMT-1, OsJMT-1, OsJMT1	JASMONIC ACID CARBOXY METHYL TRANSFERASE 1	JA carboxy methyl transferase 1, jasmonic acid carboxy methyl transferase 1	JASMONIC ACID CARBOXY METHYL TRANSFERASE 1		6	LOC_Os06g20920. 	 Biochemical character	Os06g0314600	LOC_Os06g20920.2, LOC_Os06g20920.1				GO:0008168 - methyltransferase activity		
22011	_	ACX1, OsACX1	_	acyl-CoA oxidase 1			6	LOC_Os06g01390. GO:0071949: FAD binding.	 Biochemical character	Os06g0103500	LOC_Os06g01390.1				GO:0050660 - FAD binding, GO:0003995 - acyl-CoA dehydrogenase activity, GO:0003997 - acyl-CoA oxidase activity, GO:0005777 - peroxisome, GO:0033539 - fatty acid beta-oxidation using acyl-CoA dehydrogenase		
22012	_	ACX3, OsACX3	_	acyl-CoA oxidase 3			6	LOC_Os06g24704. GO:0071949: FAD binding.	 Biochemical character	Os06g0354500	LOC_Os06g24704.1				GO:0033539 - fatty acid beta-oxidation using acyl-CoA dehydrogenase, GO:0050660 - FAD binding, GO:0003995 - acyl-CoA dehydrogenase activity, GO:0005777 - peroxisome, GO:0003997 - acyl-CoA oxidase activity		
22013	ACX4	OsACX4	ACYL-COA OXIDASE 4	acyl-CoA oxidase 4	ACYL-COA OXIDASE 4		5	LOC_Os05g07090.	 Biochemical character	Os05g0163700	LOC_Os05g07090.3, LOC_Os05g07090.1				GO:0003995 - acyl-CoA dehydrogenase activity, GO:0050660 - FAD binding		
22014	_		_	Quinonprotein alcohol dehydrogenase-like domain-containing protein			1		 Reproductive organ	Os01g0605400 	LOC_Os01g42060.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009793 - embryonic development ending in seed dormancy, GO:0010183 - pollen tube guidance		PO:0000084 - plant sperm cell 
22015	_		_	Hypothetical conserved gene			2		 Reproductive organ	Os02g0664400  	LOC_Os02g44530.1						PO:0000084 - plant sperm cell 
22016	_	PEG1	_	paternally expressed gene1		peg1-1, peg1-2	1	LOC_Os01g08570. Similar to Oxidoreductase. a 2-oxoglutarate and iron-dependent oxygenase. TO:1000022: anther morphology trait.	 Biochemical character,  Reproductive organ,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0180900 	LOC_Os01g08570.1				GO:0005506 - iron ion binding, GO:0031418 - L-ascorbic acid binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000696 - starch content, TO:0000304 - seed thickness, TO:0000391 - seed size	PO:0000084 - plant sperm cell , PO:0009089 - endosperm 
22017	_		_	Hypothetical conserved gene			7		 Reproductive organ	Os07g0634100  	LOC_Os07g44030.1				GO:0005634 - nucleus, GO:0003682 - chromatin binding		PO:0000084 - plant sperm cell 
22018	_		_	Hypothetical conserved gene			10		 Reproductive organ	Os10g0550400   	LOC_Os10g40280.1						PO:0000084 - plant sperm cell 
22019	_		_	Hypothetical conserved gene			1		 Reproductive organ	Os01g0853600    	LOC_Os01g63444.2, LOC_Os01g63444.1						PO:0000084 - plant sperm cell 
22020	_		_	Peptidase, trypsin-like serine and cysteine domain-containing protein			3		 Reproductive organ	Os03g0661900     	LOC_Os03g45980.1						PO:0000084 - plant sperm cell 
22021	_		_	Protein of unknown function DUF248, methyltransferase putative family protein			11		 Biochemical character,  Reproductive organ	Os11g0601600      	LOC_Os11g38860.1				GO:0005737 - cytoplasm, GO:0016021 - integral to membrane, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0032259 - methylation		PO:0000084 - plant sperm cell 
22022	_		_	Conserved hypothetical protein			2		 Reproductive organ	Os02g0177400      	LOC_Os02g08080.1						PO:0000084 - plant sperm cell 
22023	_		_	ubiquitin fusion protein			9	Similar to UBQ13 (ubiquitin 13).	 Reproductive organ	Os09g0483200       	LOC_Os09g31019.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		PO:0000084 - plant sperm cell 
22024	_		_	Conserved hypothetical protein			9		 Reproductive organ	Os09g0244200        							PO:0000084 - plant sperm cell 
22025	_		_	Hypothetical conserved gene			11		 Reproductive organ	Os11g0620800         	LOC_Os11g40560.1						PO:0000084 - plant sperm cell 
22026	_		_	Hypothetical gene			2		 Reproductive organ	Os02g0628100          							PO:0000084 - plant sperm cell 
22027	_		_				3	Similar to ECA1 protein. GO:0080155: regulation of double fertilization forming a zygote and endosperm. GO:2000008: regulation of protein localization to cell surface.	 Reproductive organ	Os03g0296600           	LOC_Os03g18530.1				GO:0005622 - intracellular, GO:0009567 - double fertilization forming a zygote and endosperm, GO:0048240 - sperm capacitation, GO:0005576 - extracellular region, GO:0031982 - vesicle		PO:0020094 - plant egg cell 
22028	_		_				5	Similar to LRR protein.	 Reproductive organ	Os05g0491400            	LOC_Os05g41230.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction		PO:0020094 - plant egg cell 
22029	SUMO3	OsSUMO3	SMALL UBIQUITIN LIKE MODIFIER 3	Ubiquitin domain-containing protein, small ubiquitin like modifier 3, small ubiquitin like modifier protein 3, SUMO protein 3	SMALL UBIQUITIN LIKE MODIFIER 3		7		 Biochemical character,  Reproductive organ	Os07g0574500             	LOC_Os07g38690.1				GO:0031386 - protein tag, GO:0016925 - protein sumoylation, GO:0005634 - nucleus		PO:0009005 - root , PO:0020094 - plant egg cell 
22030	_		_	Allergen V5/Tpx-1 related family protein			4		 Reproductive organ	Os04g0289600              	LOC_Os04g22220.1						PO:0020094 - plant egg cell 
22031	_		_	3'-5' exonuclease domain-containing protein			1		 Reproductive organ	Os01g0299700               	LOC_Os01g19420.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0008408 - 3'-5' exonuclease activity		PO:0020094 - plant egg cell 
22032	_		_	Conserved hypothetical protein			7		 Reproductive organ	Os07g0136300                	LOC_Os07g04330.1				GO:0016021 - integral to membrane		PO:0020094 - plant egg cell 
22033	_		_				3	Similar to TPR Domain-containing protein	 Reproductive organ	Os03g0679800                 	LOC_Os03g47620.1, LOC_Os03g47614.1						PO:0020094 - plant egg cell 
22034	_		_	Protein of unknown function Cys-rich family protein			10		 Reproductive organ	Os10g0560200                  	LOC_Os10g41083.1				GO:0016021 - integral to membrane		PO:0020094 - plant egg cell 
22035	_		_	Conserved hypothetical protein			1		 Reproductive organ	Os01g0350500                   	LOC_Os01g24840.1						PO:0020094 - plant egg cell 
22036	_		_	Armadillo-like helical domain-containing protein			11		 Reproductive organ	Os11g0579900                    	LOC_Os11g37090.1				GO:0003723 - RNA binding		PO:0020094 - plant egg cell 
22037	_	OsFDML4, FDML4	_	Region of unknown function XH domain-containing protein, FACTOR OF DNA METHYLATION LIKE 4			5	LOC_Os05g06130.	 Reproductive organ	Os05g0153200                     	LOC_Os05g06130.1				GO:0005655 - nucleolar ribonuclease P complex, GO:0031047 - gene silencing by RNA		PO:0020094 - plant egg cell 
22038	_		_	Lipase class 3 family protein			1	down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os01g0936200                      	LOC_Os01g71010.2, LOC_Os01g71010.1				GO:0016787 - hydrolase activity, GO:0009566 - fertilization, GO:0006629 - lipid metabolic process		
22039	_		_	Aromatic-ring hydroxylase family protein			3	GO:0071949: FAD binding. GO:0044550: secondary metabolite biosynthetic process. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os03g0154000                       	LOC_Os03g05910.3, LOC_Os03g05910.2, LOC_Os03g05910.1				GO:0004497 - monooxygenase activity, GO:0009566 - fertilization		
22040	_		_	Dormancyauxin associated family protein			8	down-regulated after fertilization (Abiko et al. 2013).	 Reproductive organ - Pollination, fertilization, fertility	Os08g0453200                      	LOC_Os08g35190.3, LOC_Os08g35190.2, LOC_Os08g35190.1				GO:0009566 - fertilization		
22041	_		_	"\"Leucine-rich repeat, cysteine-containing subtype-containing protein\""			4	down-regulated after fertilization (Abiko et al. 2013).	 Reproductive organ - Pollination, fertilization, fertility	Os04g0503500                       	LOC_Os04g42470.8, LOC_Os04g42470.7, LOC_Os04g42470.6, LOC_Os04g42470.5, LOC_Os04g42470.4, LOC_Os04g42470.3, LOC_Os04g42470.2, LOC_Os04g42470.1				GO:0009566 - fertilization		
22042	_		_	"\"Leucine-rich repeat, cysteine-containing subtype-containing protein\""			8	Q6UTZ2. Similar to MGDG synthase type A. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os08g0299400                        	LOC_Os08g20420.2, LOC_Os08g20420.1				GO:0009247 - glycolipid biosynthetic process, GO:0009566 - fertilization, GO:0046509 - 1,2-diacylglycerol 3-beta-galactosyltransferase activity, GO:0031969 - chloroplast membrane		
22043	_		_	High mobility group, HMG1/HMG2 domain-containing protein			2	up-regulated after fertilization (Abiko et al. 2013).		Os02g0258200                         	LOC_Os02g15810.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009790 - embryonic development		
22044	_		_				1	Similar to Calreticulin 3. up-regulated after fertilization (Abiko et al. 2013).		Os01g0895600                          	LOC_Os01g67054.3, LOC_Os01g67054.2, LOC_Os01g67054.1				GO:0006457 - protein folding, GO:0005783 - endoplasmic reticulum, GO:0009790 - embryonic development, GO:0016021 - integral to membrane, GO:0005509 - calcium ion binding, GO:0051082 - unfolded protein binding		
22045	_		_	Conserved hypothetical protein			10	up-regulated after fertilization (Abiko et al. 2013).		Os10g0580900                           	LOC_Os10g43060.1				GO:0009790 - embryonic development		
22046	_		_				8	Similar to Transparent testa 12 protein. up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character	Os08g0562800	LOC_Os08g44870.3, LOC_Os08g44870.2, LOC_Os08g44870.1				GO:0006855 - multidrug transport, GO:0015238 - drug transporter activity, GO:0016021 - integral to membrane, GO:0009790 - embryonic development, GO:0015297 - antiporter activity		
22047	_		_	Conserved hypothetical protein			1	up-regulated after fertilization (Abiko et al. 2013).		Os01g0551000 	LOC_Os01g37040.1				GO:0009790 - embryonic development		
22048	_		_	Protein kinase PKN/PRK1 effector domain-containing protein			2	up-regulated after fertilization (Abiko et al. 2013).		Os02g0572600  	LOC_Os02g36350.2, LOC_Os02g36350.1				GO:0009790 - embryonic development		
22049	_		_	DEAD-like helicase N-terminal domain-containing protein			4	up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character	Os04g0177300   	LOC_Os04g09800.1				GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0009790 - embryonic development, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0005524 - ATP binding, GO:0009294 - DNA mediated transformation		
22050	_	OsPR5, PR5	_	pathogenesis-related gene 5			4	LOC_Os04g59370.	 Tolerance and resistance - Stress tolerance	Os04g0689900 	LOC_Os04g59370.1				GO:0009414 - response to water deprivation, GO:0009845 - seed germination	TO:0000276 - drought tolerance	PO:0007057 - 0 seed germination stage 
22051	WIN1	BTBN6	WINDING 1	BTBN protein 6			3	LOC_Os03g22600. GO:0060918: auxin transport.		Os03g0347700	LOC_Os03g22600.1				GO:0045177 - apical part of cell, GO:0045178 - basal part of cell, GO:0016049 - cell growth, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma	TO:0002672 - auxin content	PO:0009005 - root 
22052	KOD1	OsKOD1	KISS OF DEATH 1	kiss of death 1			4	a cell death-related gene.	 Tolerance and resistance - Stress tolerance	Os04g0507950 					GO:0010446 - response to alkalinity	TO:0000481 - alkali sensitivity	
22053	_	CSIL1, OsCSIL1	_	CSI-like 1, CELLULOSE SYNTHASE INTERACTING1-like 1			6	LOC_Os06g11990. CSIL1 was closely related to the Arabidopsis CSI1/POM2. rice CSI1/POM2 homolog.		Os06g0223800	LOC_Os06g11990.1				GO:0010089 - xylem development, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0052324 - cell wall cellulose biosynthetic process	TO:0000470 - vascular tissue related trait	
22054	_		_				7	OsMIR528 target gene.	 Tolerance and resistance - Stress tolerance	Os07g0570550	LOC_Os07g38290.1				GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
22055	_		_				7	LOC_Os07g37820. a candidate gene for GWi7.1. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0565500	LOC_Os07g37820.1						
22056	_		_				7	LOC_Os07g38980. a candidate gene for GWi7.2. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0577750	LOC_Os07g38980.1					TO:0002730 - grain shape	
22057	_		_				7	LOC_Os07g41000. a candidate gene for GWi7.2. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape		LOC_Os07g41000					TO:0002730 - grain shape	
22058	_		_				7	LOC_Os07g41080. a candidate gene for GWi7.2. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0602100	LOC_Os07g41080.1					TO:0002730 - grain shape	
22059	_		_				7	LOC_Os07g37150. a candidate gene for GWi7.1. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0557601	LOC_Os07g37150.1						
22060	_		_				7	LOC_Os07g37156. a candidate gene for GWi7.1. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0557700	LOC_Os07g37156.1				GO:0046658 - anchored to plasma membrane		
22061	_		_				3	LOC_Os03g29710.	 Seed - Morphological traits - Grain shape	Os03g0410500	LOC_Os03g29710.1					TO:0000734 - grain length	
22062	_		_				3	LOC_Os03g29730.	 Seed - Morphological traits - Grain shape	Os03g0410700	LOC_Os03g29730.1				GO:0009535 - chloroplast thylakoid membrane	TO:0000734 - grain length	
22063	DRB1A	OsDRB1a, DRB1a	DSRNA-BINDING PROTEIN 1A	dsRNA-binding protein 1a	DSRNA-BINDING PROTEIN 1A		11	LOC_Os11g01869. Q0IV63. AtHYL1 homolog. GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Tolerance and resistance - Disease resistance	Os11g0109900	LOC_Os11g01869.2, LOC_Os11g01869.1				GO:0031054 - pre-microRNA processing, GO:0003725 - double-stranded RNA binding, GO:0004525 - ribonuclease III activity, GO:0005634 - nucleus, GO:0030422 - production of siRNA involved in RNA interference, GO:0031053 - primary microRNA processing, GO:0051607 - defense response to virus, GO:0035196 - production of miRNAs involved in gene silencing by miRNA	TO:0000148 - viral disease resistance	
22064	DRB1C	OsDRB1c, DRB1c	DSRNA-BINDING PROTEIN 1C	dsRNA-binding protein 1c	DSRNA-BINDING PROTEIN 1C		5	LOC_Os05g24160. Q0DJA3. AtHYL1 homolog. GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.		Os05g0307400	LOC_Os05g24160.2, LOC_Os05g24160.1				GO:0031053 - primary microRNA processing, GO:0031054 - pre-microRNA processing, GO:0003725 - double-stranded RNA binding, GO:0004525 - ribonuclease III activity, GO:0005634 - nucleus, GO:0030422 - production of siRNA involved in RNA interference		
22065	DRB2	OsDRB2	DSRNA-BINDING PROTEIN 2	dsRNA-binding protein 2	DSRNA-BINDING PROTEIN 2		10	LOC_Os10g33970. Q9AV50. AtHYL1 homolog.		Os10g0480500	LOC_Os10g33970.2, LOC_Os10g33970.1				GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0005737 - cytoplasm, GO:0070919 - production of siRNA involved in chromatin silencing by small RNA, GO:0003725 - double-stranded RNA binding		
22066	DRB3	OsDRB3	DSRNA-BINDING PROTEIN 3	dsRNA-binding protein 3	DSRNA-BINDING PROTEIN 3		9	LOC_Os09g33460. B7E321. AtHYL1 homolog.		Os09g0508500	LOC_Os09g33460.2, LOC_Os09g33460.1				GO:0003723 - RNA binding		
22067	DRB4	OsDRB4	DSRNA-BINDING PROTEIN 4	dsRNA-binding protein 4	DSRNA-BINDING PROTEIN 4		1	LOC_Os01g56520. Q5N8Z0. AtHYL1 homolog.		Os01g0772000	LOC_Os01g56520.2, LOC_Os01g56520.1				GO:0003723 - RNA binding		
22068	EMSA1	OsEMSA1	EMBRYO SAC 1				10	KX503265. PO:0030123: panicle inflorescence.	 Reproductive organ	Os10g0524300	LOC_Os10g38040.1				GO:0009553 - embryo sac development, GO:0009725 - response to hormone stimulus	TO:0000401 - plant growth hormone sensitivity, TO:0000180 - spikelet fertility, TO:0000476 - growth hormone content	PO:0009047 - stem , PO:0009072 - plant ovary , PO:0025034 - leaf , PO:0009005 - root 
22069	_		_				3	Os.43929 in Zhu et al. 2017. TO:0020106: Indole-3-acetic acid content.		Os03g0115800	LOC_Os03g02470.3, LOC_Os03g02470.2, LOC_Os03g02470.1					TO:0002675 - gibberellic acid content	
22070	PI57	Pi57, Pi57(t)	PYRICULARIA ORYZAE RESISTANCE 57				12	Pi57(t) was finally mapped to a 51.7-kb region flanked by two molecular markers (STS57-320 and STS57-372) on the short arm and close to the centromere of chromosome 12. Six candidate resistance genes (LOC_os12g18690, LOC_os12g18700, LOC_os12g18710, LOC_os12g18729, LOC_os12g18750, and LOC_os12g18760) were predicted in the target region according to the reference sequence of Nipponbare (Dong et al. 2017).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000074 - blast disease	
22071	_	OsFIGNL1, FIGNL1	_	OsFidgetin-like 1, Fidgetin-like 1		Osfignl1	12		 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os12g0443800 	LOC_Os12g25720.1				GO:0048653 - anther development, GO:0005524 - ATP binding, GO:0010569 - regulation of double-strand break repair via homologous recombination, GO:0005634 - nucleus, GO:0007140 - male meiosis	TO:0000437 - male sterility	PO:0001004 - anther development stage 
22072	S40-2	OsS40-2	S40 PROTEIN 2	S40 protein 2	S40 PROTEIN 2		5	LOC_Os05g44260.		Os05g0518800	LOC_Os05g44260.1				GO:0005634 - nucleus		
22073	S40-3	OsS40-3	S40 PROTEIN 3	S40 protein 3	S40 PROTEIN 3		10	LOC_Os10g27350.			LOC_Os10g27350				GO:0005634 - nucleus		
22074	S40-4	OsS40-4	S40 PROTEIN 4	S40 protein 4	S40 PROTEIN 4		3	LOC_Os03g02280.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0113900	LOC_Os03g02280.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence, TO:0006001 - salt tolerance	PO:0001054 - 4 leaf senescence stage 
22075	S40-5	OsS40-5	S40 PROTEIN 5	S40 protein 5	S40 PROTEIN 5		4	LOC_Os04g45834.	 Tolerance and resistance - Stress tolerance	Os04g0542000 	LOC_Os04g45834.3, LOC_Os04g45834.2, LOC_Os04g45834.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000276 - drought tolerance	
22076	S40-6	OsS40-6	S40 PROTEIN 6	S40 protein 6	S40 PROTEIN 6		4	LOC_Os04g33760.	 Tolerance and resistance - Stress tolerance	Os04g0413900 	LOC_Os04g33760.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
22077	S40-7	OsS40-7	S40 PROTEIN 7	S40 protein 7	S40 PROTEIN 7		1	LOC_Os01g52730.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0727500 	LOC_Os01g52730.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
22078	S40-8	OsS40-8	S40 PROTEIN 8	S40 protein 8	S40 PROTEIN 8		10	LOC_Os10g33990.		Os10g0481000 	LOC_Os10g33990.1						
22079	S40-9	OsS40-9	S40 PROTEIN 9	S40 protein 9	S40 PROTEIN 9		1	LOC_Os01g64300.	 Tolerance and resistance - Stress tolerance	Os01g0862600 	LOC_Os01g64300.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
22080	S40-10	OsS40-10	S40 PROTEIN 10	S40 protein 10	S40 PROTEIN 10		1	LOC_Os01g52740.		Os01g0727600/Os01g0727700  							
22081	S40-11	OsS40-11	S40 PROTEIN 11	S40 protein 11	S40 PROTEIN 11		12	LOC_Os12g05980.		Os12g0156000	LOC_Os12g05980.1						
22082	S40-12	OsS40-12	S40 PROTEIN 12	S40 protein 12	S40 PROTEIN 12		11	LOC_Os11g05600.		Os11g0154300	LOC_Os11g05600.1				GO:0009507 - chloroplast		
22083	S40-13	OsS40-13	S40 PROTEIN 13	S40 protein 13	S40 PROTEIN 13		4	LOC_Os04g43990.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0520700	LOC_Os04g43990.1				GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0010150 - leaf senescence	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
22084	S40-14	OsS40-14	S40 PROTEIN 14	S40 protein 14	S40 PROTEIN 14		5	LOC_Os05g45440.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0531000	LOC_Os05g45440.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0010150 - leaf senescence	TO:0000276 - drought tolerance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
22085	S40-15	OsS40-15	S40 PROTEIN 15	S40 protein 15	S40 PROTEIN 15		7	LOC_Os07g33270.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os07g0516300	LOC_Os07g33270.1				GO:0009651 - response to salt stress, GO:0010150 - leaf senescence	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
22086	S40-16	OsS40-16	S40 PROTEIN 16	S40 protein 16	S40 PROTEIN 16		7	LOC_Os07g32810.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os07g0512250	LOC_Os07g32810.1				GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0009651 - response to salt stress	TO:0000249 - leaf senescence, TO:0006001 - salt tolerance	PO:0001054 - 4 leaf senescence stage 
22087	_	MT1Ld, OsMT1Ld	_	Metallothionein type 1-like protein d			12	LOC_Os12g38051.	 Tolerance and resistance - Stress tolerance	Os12g0568500 	LOC_Os12g38051.1				GO:0046872 - metal ion binding, GO:0010618 - aerenchyma formation, GO:0030912 - response to deep water	TO:0000103 - deepwater stress	PO:0009005 - root 
22088	HCAR	OsHCAR	7-HYDROXYMETHYL CHL A REDUCTASE	7-hydroxymethyl Chl a reductase	7-HYDROXYMETHYL CHL A REDUCTASE	oshcar	4	LOC_Os04g25400. Q7XTG7. GO:0090415: 7-hydroxymethyl chlorophyll a reductase activity.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0320100	LOC_Os04g25400.2				GO:0000302 - response to reactive oxygen species, GO:0009642 - response to light intensity, GO:0009635 - response to herbicide, GO:0033354 - chlorophyll cycle, GO:0046872 - metal ion binding, GO:0051536 - iron-sulfur cluster binding, GO:0070265 - necrotic cell death, GO:0015996 - chlorophyll catabolic process, GO:0009507 - chloroplast	TO:0002657 - oxidative stress, TO:0000652 - leaf necrosis, TO:0000326 - leaf color, TO:0000058 - herbicide sensitivity, TO:0000460 - light intensity sensitivity	
22089	_	RBP-159	_	RNA-binding RBP-159			10	LOC_Os10g17454. RNA recognition motif-containing, Gly-richprotein (mitochondria).		Os10g0321700	LOC_Os10g17454.3, LOC_Os10g17454.2, LOC_Os10g17454.1				GO:0003723 - RNA binding		
22090	_	RBP-157	_	RNA-binding RBP-157			6	LOC_Os06g11730. RNA recognition motif (RRM)-containing protein.		Os06g0220600	LOC_Os06g11730.1				GO:0003723 - RNA binding		
22091	_	RBP-61	_	RNA-binding RBP-61			5	LOC_Os05g36120. RNA recognition motif (RRM), polypyrimidine tract-binding protein.		Os05g0437300	LOC_Os05g36120.3, LOC_Os05g36120.2, LOC_Os05g36120.1				GO:0006397 - mRNA processing, GO:0005634 - nucleus, GO:0003723 - RNA binding		
22092	_	RBP-59	_	RNA-binding RBP-59			3	LOC_Os03g38990. Putative DNA helicase family protein, DNA-binding protein.		Os03g0586900	LOC_Os03g38990.1				GO:0004386 - helicase activity, GO:0003677 - DNA binding, GO:0005524 - ATP binding		
22093	_	RBP-23	_	RNA-binding RBP-23			5	LOC_Os05g05320. Pentatricopeptide (PPR) repeat-containing protein (mitochondria).		Os05g0145600	LOC_Os05g05320.2, LOC_Os05g05320.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification, GO:0005739 - mitochondrion, GO:0043231 - intracellular membrane-bounded organelle, GO:0004519 - endonuclease activity		
22094	_	LTPL163	_	protease inhibitor/seed storage/LTP family protein 163			7	LOC_Os07g11630. Q7X7E6.		Os07g0216600	LOC_Os07g11630.1				GO:0045735 - nutrient reservoir activity, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region, GO:0019863 - IgE binding		
22095	_		_	HR-like lesion-inducer family protein			10	LOC_Os10g30860.		Os10g0445500	LOC_Os10g30860.1				GO:0016021 - integral to membrane		
22096	BG2	OsaBG2, OsBG2	BIG GRAIN2	big grain2, big grain 2			10	LOC_Os10g25810. A3C4H3. GO:0060918: auxin transport.			LOC_Os10g25810				GO:0010929 - positive regulation of auxin mediated signaling pathway, GO:0005886 - plasma membrane, GO:0009734 - auxin mediated signaling pathway		
22097	BG3	OsaBG3, OsBG3	BIG GRAIN3	big grain3, big grain 3			2	LOC_Os02g53660.		Os02g0776600	LOC_Os02g53660.1						
22098	BG4	OsaBG4, OsBG4	BIG GRAIN4	big grain4, big grain 4			9	LOC_Os09g27160.		Os09g0443700/Os09g0443800							
22099	_	OsaBGL1, OsBGL1, BGL1	_	BIG GRAIN LIKE 1			3	LOC_Os03g30120.		Os03g0414900	LOC_Os03g30120.1						
22100	PC	OsPC	PLASTOCYANIN	plastocyanin	PLASTOCYANIN		6	LOC_Os06g01210. Q0DFC9. rice ortholog of AtPETE1 and AtPETE2.	 Biochemical character	Os06g0101600	LOC_Os06g01210.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0009535 - chloroplast thylakoid membrane		
22101	XRN4	OsXrn4, Xrn4	5'-3' EXORIBONUCLEASE 4	5'-3' exoribonuclease 4	5'-3' EXORIBONUCLEASE 4		3		 Tolerance and resistance - Disease resistance	Os03g0794800	LOC_Os03g58060.3, LOC_Os03g58060.2, LOC_Os03g58060.1				GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0051607 - defense response to virus, GO:0010494 - stress granule, GO:0010587 - miRNA catabolic process, GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA, GO:0070370 - cellular heat acclimation, GO:0000932 - cytoplasmic mRNA processing body, GO:0009826 - unidimensional cell growth, GO:0005844 - polysome, GO:0004534 - 5'-3' exoribonuclease activity, GO:0003729 - mRNA binding, GO:0008270 - zinc ion binding, GO:0051301 - cell division, GO:0040029 - regulation of gene expression, epigenetic, GO:0010087 - phloem or xylem histogenesis, GO:0000291 - nuclear-transcribed mRNA catabolic process, exonucleolytic, GO:0006397 - mRNA processing	TO:0000148 - viral disease resistance	
22102	XRN3	OsXrn3, Xrn3	5'-3' EXORIBONUCLEASE 3	5'-3' exoribonuclease 3	5'-3' EXORIBONUCLEASE 3		1	LOC_Os01g65220.		Os01g0872700	LOC_Os01g65220.1				GO:0008270 - zinc ion binding, GO:0006397 - mRNA processing, GO:0004534 - 5'-3' exoribonuclease activity, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
22103	_	OsXrn4-L, Xrn4-L	_	OsXrn4-like, Xrn4-like, 5'-3' exoribonuclease 4-like			2	LOC_Os02g28074.		Os02g0481900	LOC_Os02g28074.3, LOC_Os02g28074.2, LOC_Os02g28074.1				GO:0006397 - mRNA processing, GO:0005634 - nucleus, GO:0004534 - 5'-3' exoribonuclease activity, GO:0003676 - nucleic acid binding		
22104	_	OsINO80, INO80	_			osino80	3	LOC_Os03g22900. ATP-dependent chromatin-remodeling factor.	 Vegetative organ - Culm,  Reproductive organ - Heading date	Os03g0352450/Os03g0352500					GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0006281 - DNA repair, GO:0006338 - chromatin remodeling, GO:0009845 - seed germination, GO:0009846 - pollen germination, GO:0009860 - pollen tube growth, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0016887 - ATPase activity, GO:0031011 - Ino80 complex, GO:0048608 - reproductive structure development, GO:0051510 - regulation of unidimensional cell growth, GO:2000028 - regulation of photoperiodism, flowering	TO:0002675 - gibberellic acid content, TO:0000207 - plant height, TO:0002616 - flowering time	PO:0007057 - 0 seed germination stage 
22105	_	OsH2A.Z, H2A.Z	_	histone 2A.Z													
22106	_	HTA705	_					histone H2A.Z gene.							GO:0007623 - circadian rhythm, GO:0032922 - circadian regulation of gene expression		
22107	_	HTA713	_					histone H2A.Z gene. 									
22109	ALDH2B1  	OsALDH2B1	ALDEHYDE DEHYDROGENASE 2B1	Aldehyde dehydrogenase 2B1	ALDEHYDE DEHYDROGENASE 2B1		6	LOC_Os06g15990.	 Biochemical character	Os06g0270900	LOC_Os06g15990.1				GO:0005739 - mitochondrion, GO:0004029 - aldehyde dehydrogenase (NAD) activity, GO:0016491 - oxidoreductase activity		
22110	ALDH2C1   	OsALDH2C1	ALDEHYDE DEHYDROGENASE 2C1	Aldehyde dehydrogenase 2C1	ALDEHYDE DEHYDROGENASE 2C1		1	LOC_Os01g40870.	 Biochemical character	Os01g0591300	LOC_Os01g40870.1				GO:0004029 - aldehyde dehydrogenase (NAD) activity, GO:0005829 - cytosol, GO:0016491 - oxidoreductase activity		
22111	ALDH3B1    	OsALDH3B1	ALDEHYDE DEHYDROGENASE 3B1	Aldehyde dehydrogenase 3B1	ALDEHYDE DEHYDROGENASE 3B1		4	LOC_Os04g45720. Variable substrate ALDH.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0540600	LOC_Os04g45720.1				GO:0006081 - cellular aldehyde metabolic process, GO:0009629 - response to gravity, GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity	TO:0002693 - gravity response trait	
22112	ALDH3E2     	OsALDH3E2	ALDEHYDE DEHYDROGENASE 3E2	Aldehyde dehydrogenase 3E2	ALDEHYDE DEHYDROGENASE 3E2		2	LOC_Os02g43280. Variable substrate ALDH.	 Biochemical character	Os02g0647900	LOC_Os02g43280.2, LOC_Os02g43280.1				GO:0009507 - chloroplast, GO:0016491 - oxidoreductase activity, GO:0006081 - cellular aldehyde metabolic process, GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity		
22113	ALDH3H1      	OsALDH3H1	ALDEHYDE DEHYDROGENASE 3H1	Aldehyde dehydrogenase 3H1	ALDEHYDE DEHYDROGENASE 3H1		12	LOC_Os12g07810.	 Biochemical character	Os12g0177900	LOC_Os12g07810.1				GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0016491 - oxidoreductase activity, GO:0005773 - vacuole, GO:0006081 - cellular aldehyde metabolic process, GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity		
22114	ALDH3H2    	OsALDH3H2	ALDEHYDE DEHYDROGENASE 3H2	Aldehyde dehydrogenase 3H2	ALDEHYDE DEHYDROGENASE 3H2		11	LOC_Os11g08300. Variable substrate ALDH.	 Biochemical character	Os11g0186200	LOC_Os11g08300.3, LOC_Os11g08300.2, LOC_Os11g08300.1				GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity, GO:0006081 - cellular aldehyde metabolic process, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane		
22115	ALDH6B2     	OsALDH6B2	ALDEHYDE DEHYDROGENASE 6B2	Aldehyde dehydrogenase 6B2, Methylmalonate-semialdehyde dehydrogenase	ALDEHYDE DEHYDROGENASE 6B2		7	LOC_Os07g09060. MM-ALDH.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0188800	LOC_Os07g09060.3, LOC_Os07g09060.2, LOC_Os07g09060.1				GO:0009408 - response to heat, GO:0005507 - copper ion binding, GO:0004491 - methylmalonate-semialdehyde dehydrogenase (acylating) activity, GO:0006979 - response to oxidative stress, GO:0005739 - mitochondrion, GO:0050832 - defense response to fungus	TO:0000259 - heat tolerance, TO:0000074 - blast disease	
22116	ALDH12B1      	OsALDH12B1	ALDEHYDE DEHYDROGENASE 12B1	Aldehyde dehydrogenase 12B1	ALDEHYDE DEHYDROGENASE 12B1		12	LOC_Os12g40440. P5CDH.	 Biochemical character	Os12g0596000	LOC_Os12g40450.1, LOC_Os12g40440.1				GO:0016874 - ligase activity, GO:0033819 - lipoyl(octanoyl) transferase activity, GO:0009249 - protein lipoylation, GO:0005739 - mitochondrion		
22117	_     	OsALDH12A1, ALDH12A1	_	Aldehyde dehydrogenase 12A1	ALDEHYDE DEHYDROGENASE 12B1		5	LOC_Os05g45960 (Obsolete Locus, not found in MSU Rice Genome Annotation Project Release 7 data ). P5CDH.	 Biochemical character						GO:0005739 - mitochondrion		
22118	_		_	indole-3-glycerol phosphate synthase family protein			8	LOC_Os08g23150.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0320400	LOC_Os08g23150.1				GO:0004425 - indole-3-glycerol-phosphate synthase activity, GO:0009635 - response to herbicide, GO:0006568 - tryptophan metabolic process	TO:0000058 - herbicide sensitivity	
22119	NTMC2T1.1	OsNTMC2T1.1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.1	N-terminal-TM-C2 domain protein 1.1, N-terminal trans- membrane and C2 domain protein 1.1, NTMC2 type 1.1 protein, NTMC2 family gene 1.1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.1		2	LOC_Os02g25060.		Os02g0448400	LOC_Os02g25060.2, LOC_Os02g25060.1				GO:0005783 - endoplasmic reticulum, GO:0008289 - lipid binding, GO:0016021 - integral to membrane		
22120	NTMC2T1.2	OsNTMC2T1.2	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.2	N-terminal-TM-C2 domain protein 1.2, N-terminal trans- membrane and C2 domain protein 1.2, NTMC2 type 1.2 protein, NTMC2 family gene 1.2	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.2		9	LOC_Os09g36770.		Os09g0538800	LOC_Os09g36770.3, LOC_Os09g36770.2, LOC_Os09g36770.1				GO:0016021 - integral to membrane, GO:0008289 - lipid binding		
22121	NTMC2T1.3	OsNTMC2T1.3	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.3	N-terminal-TM-C2 domain protein 1.3, N-terminal trans- membrane and C2 domain protein 1.3, NTMC2 type 1.3 protein, NTMC2 family gene 1.3	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.3		1	LOC_Os01g60350.		Os01g0819300	LOC_Os01g60350.1						
22122	NTMC2T1.4	OsNTMC2T1.4	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.4	N-terminal-TM-C2 domain protein 1.4, N-terminal trans- membrane and C2 domain protein 1.4, NTMC2 type 1.4 protein, NTMC2 family gene 1.4	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.4		1	LOC_Os01g60340.		Os01g0819150	LOC_Os01g60340.1						
22123	NTMC2T1.5	OsNTMC2T1.5	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.5	N-terminal-TM-C2 domain protein 1.5, N-terminal trans- membrane and C2 domain protein 1.5, NTMC2 type 1.5 protein, NTMC2 family gene 1.5	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.5		6	LOC_Os06g47130.		Os06g0685300	LOC_Os06g47130.3, LOC_Os06g47130.2, LOC_Os06g47130.1				GO:0016021 - integral to membrane, GO:0008289 - lipid binding		
22124	NTMC2T2.1	OsNTMC2T2.1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.1	N-terminal-TM-C2 domain protein 2.1, N-terminal trans- membrane and C2 domain protein 2.1, NTMC2 type 2.1 protein, NTMC2 family gene 2.1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.1		4	LOC_Os04g55220.		Os04g0644900	LOC_Os04g55220.1				GO:0008289 - lipid binding		
22125	NTMC2T2.2	OsNTMC2T2.2	N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.2	N-terminal-TM-C2 domain protein 2.2, N-terminal trans- membrane and C2 domain protein 2.2, NTMC2 type 2.2 protein, NTMC2 family gene 2.2	N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.2		8	LOC_Os08g20544.		Os08g0300200	LOC_Os08g20544.1				GO:0008289 - lipid binding		
22126	NTMC2T3	OsNTMC2T3	N-TERMINAL-TM-C2 DOMAIN PROTEIN 3	N-terminal-TM-C2 domain protein 3, N-terminal trans- membrane and C2 domain protein 3, NTMC2 type 3 protein, NTMC2 family gene 3	N-TERMINAL-TM-C2 DOMAIN PROTEIN 3		1	LOC_Os01g03820.		Os01g0128800	LOC_Os01g03820.1				GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum		
22127	NTMC2T4.1	OsNTMC2T4.1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.1	N-terminal-TM-C2 domain protein 4.1, N-terminal trans- membrane and C2 domain protein 4.1, NTMC2 type 4.1 protein, NTMC2 family gene 4.1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.1		7	LOC_Os07g22640.		Os07g0409100	LOC_Os07g22640.4, LOC_Os07g22640.3, LOC_Os07g22640.2, LOC_Os07g22640.1				GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008289 - lipid binding, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum		
22128	NTMC2T4.2	OsNTMC2T4.2	N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.2	N-terminal-TM-C2 domain protein 4.2, N-terminal trans- membrane and C2 domain protein 4.2, NTMC2 type 4.2 protein, NTMC2 family gene 4.2	N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.2		3	LOC_Os03g14700.		Os03g0251600	LOC_Os03g14700.1				GO:0008289 - lipid binding, GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent		
22129	NTMC2T5	OsNTMC2T5	N-TERMINAL-TM-C2 DOMAIN PROTEIN 5	N-terminal-TM-C2 domain protein 5, N-terminal trans- membrane and C2 domain protein 5, NTMC2 type 5 protein, NTMC2 family gene 5	N-TERMINAL-TM-C2 DOMAIN PROTEIN 5		2	LOC_Os02g58230.		Os02g0829200	LOC_Os02g58230.2, LOC_Os02g58230.1				GO:0005783 - endoplasmic reticulum		
22130	NTMC2T6.1	OsNTMC2T6.1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.1	N-terminal-TM-C2 domain protein 6.1, N-terminal trans- membrane and C2 domain protein 6.1, NTMC2 type 6.1 protein, NTMC2 family gene 6.1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.1		1	LOC_Os01g14050.	 Tolerance and resistance - Stress tolerance	Os01g0242600	LOC_Os01g14050.2, LOC_Os01g14050.1				GO:0005783 - endoplasmic reticulum, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
22131	_	CSIL2, OsCSIL2	_	CSI-like 2, CELLULOSE SYNTHASE INTERACTING1-like 2			11	LOC_Os11g08090.		Os11g0183800	LOC_Os11g08090.1						
22132	_	CSIL3, OsCSIL3	_	CSI-like 3, CELLULOSE SYNTHASE INTERACTING1-like 3			3	LOC_Os03g19462.			LOC_Os03g19462						
22133	_		_	expressed protein gene			6	LOC_Os06g38660.		Os06g0586000	LOC_Os06g38660.1				GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity	
22134	_		_	DUF581 domain- containing protein gene			6	LOC_Os06g03520.		Os06g0125200	LOC_Os06g03520.1				GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity	
22135	_		_	DUF26 kinase gene			7	LOC_Os07g35810.		Os07g0542600	LOC_Os07g35810.1				GO:0009723 - response to ethylene stimulus, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding	TO:0000173 - ethylene sensitivity	
22136	PI66	Pi66, Pi66(t)	PYRICULARIA ORYZAE RESISTANCE 66				3	novel Pi gene in AS20-1. Localized mapping using chromosome 3-based SSRs and Indels defined a genetic window for pi66(t), flanked by the markers F04-j2 and M19-i12. 	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000074 - blast disease	
22137	YGL8		YELLOW-GREEN LEAF 8	yellow green leaf 8		ygl8	1	LOC_Os01g73450.	 Biochemical character,  Vegetative organ - Leaf	Os01g0965400	LOC_Os01g73450.1				GO:0005737 - cytoplasm, GO:0006221 - pyrimidine nucleotide biosynthetic process, GO:0009658 - chloroplast organization, GO:0033862 - UMP kinase activity	TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000522 - stomatal conductance, TO:0001015 - photosynthetic rate, TO:0001018 - transpiration rate, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content	PO:0025034 - leaf 
22138	_	HEME	_	uroporphyrinogen decarboxylase			1	Q9AXB0.	 Biochemical character	Os01g0622300	LOC_Os01g43390.2, LOC_Os01g43390.1				GO:0006783 - heme biosynthetic process, GO:0005829 - cytosol, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process, GO:0004853 - uroporphyrinogen decarboxylase activity		
22139	YGL138	YGL138(t), SRP54, OsSRP54	YELLOW-GREEN LEAF 138	yellow green leaf 138, signal recognition particle 54 kDa	SIGNAL RECOGNITION PARTICLE 54 KDA 		11	LOC_Os11g05552.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os11g0153600	LOC_Os11g05552.1				GO:0048500 - signal recognition particle, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0006614 - SRP-dependent cotranslational protein targeting to membrane, GO:0008312 - 7S RNA binding, GO:0009658 - chloroplast organization	TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000180 - spikelet fertility, TO:0000456 - spikelet number, TO:0000346 - tiller number, TO:0000298 - chlorophyll ratio	
22140	PI63	Pi63, Pikahei-1(t), RGA3, RGA1-NB	PYRICULARIA ORYZAE RESISTANCE 63	Magnaporthe grisea resistance-63, Blast resistance 63, resistance gene analog 3			4	LOC_Os04g52970. AB872116, AB872124 (japonica cultivar: Kahei). a blast resistance gene from upland rice cv. Kahei. a nucleotide-binding site and leucine-rich repeat (NBS-LRR) protein. The whole amino acid sequence of Pi63 showed 81 % identity to the counterpart in Nipponbare, RGA1-NB (Os04t0620950), which also encodes an NBS-LRR protein of 1,434 amino acids with 11 imperfect LRRs.	 Tolerance and resistance - Disease resistance	Os04g0620800/Os04g0620950					GO:0043531 - ADP binding, GO:0050832 - defense response to fungus, GO:0009620 - response to fungus	TO:0000074 - blast disease	
22141	PI58	Pi58(t)	PYRICULARIA ORYZAE RESISTANCE 58	Magnaporthe grisea resistance-58, Blast resistance 58			12	a blast resistance gene from Myanmar rice landrace, Haoru (International Rice Research Institute genebank acc. no. IRGC33090). Pi58(t) was located between RM3103 and RM27954. Pi58(t) is primarily responsible for Haoru's broad-spectrum resistance. (Koide et al. 2013)	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22142	PI59	Pi59(t)	PYRICULARIA ORYZAE RESISTANCE 59	Magnaporthe grisea resistance-59, Blast resistance 59			6	a blast resistance gene from Myanmar rice landrace, Haoru (International Rice Research Institute genebank acc. no. IRGC33090). Pi59(t) was located between RM3370 and RM7311 (Koide et al. 2013).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22143	PI60	Pi60(t)	PYRICULARIA ORYZAE RESISTANCE 60	Magnaporthe grisea resistance-60, Blast resistance 60			11	Pi60(t) was delimited to a 274 kb region on the short arm of chromosome 11, flanked by InDel markers K1-4 and E12 and cosegregated with InDel markers B1 and Y10. In the 274 kb region of Pi60(t), 93-11 contains six NBS-LRR genes including the two Pia/ PiCO39 alleles. Comparison of the response spectra and physical positions between the target genes and other R genes in the same chromosome regions indicated that Pi60(t) could be Pia/PiCO39 or its allele.	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22144	PI61	Pi61(t)	PYRICULARIA ORYZAE RESISTANCE 61	Magnaporthe grisea resistance-61, Blast resistance 61			11	Pi61(t) was mapped to a 200 kb region on the short arm (near the centromere) of chromosome 12, flanked by InDel markers M2 and S29 and cosegregating with InDel marker M9. Pi61(t) appears to be different from Pita, Pita-2, Pi19(t), Pi39(t) and Pi42(t) in the same R gene cluster. 	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22145	_		_	OsWRKY55-like					 Tolerance and resistance - Stress tolerance						GO:0010039 - response to iron ion	TO:0000224 - iron sensitivity	
22146	CV	OsCV	CHLOROPLAST VESICULATION				5	GO:1904821: chloroplast disassembly. GO:0080148: negative regulation of response to water deprivation. GO:0090352: regulation of nitrate assimilation.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0575000	LOC_Os05g49940.1				GO:0080093 - regulation of photorespiration, GO:0009414 - response to water deprivation, GO:0010150 - leaf senescence		
22147	WLP2	OsWLP2, OsFLN1, FLN1	WHITE LEAF AND PANICLE 2	White Leaf and Panicle 2, fructokinase-like 1		wlp2, wlp2s, wlp2w	1	LOC_Os01g63220. a putative pfkB-type carbohydrate kinase family protein homologous to fructokinase-like 1 (AtFLN1) in Arabidopsis. a polymerase-associated protein (PAP).	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0851000	LOC_Os01g63220.3, LOC_Os01g63220.2, LOC_Os01g63220.1				GO:0042793 - transcription from plastid promoter, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009408 - response to heat, GO:0009658 - chloroplast organization, GO:0016301 - kinase activity, GO:0042644 - chloroplast nucleoid, GO:0043621 - protein self-association, GO:0045454 - cell redox homeostasis	TO:0000201 - panicle color, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000259 - heat tolerance	
22148	HSA1	OsFLN2, FLN2, HSA1/OsFLN2	HEAT-STRESS SENSITIVE ALBINO 1	fructokinase-like 2, heat-stress sensitive albino 1		hsa1	3	LOC_Os03g40550. WLP2 paralog. a putative pfkB-type carbohydrate kinase family protein. a polymerase-associated protein (PAP).	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0602600	LOC_Os03g40550.1				GO:0009658 - chloroplast organization, GO:0009408 - response to heat, GO:0006355 - regulation of transcription, DNA-dependent, GO:0045454 - cell redox homeostasis, GO:0042793 - transcription from plastid promoter, GO:0042644 - chloroplast nucleoid, GO:0009662 - etioplast organization, GO:0000427 - plastid-encoded plastid RNA polymerase complex	TO:0000259 - heat tolerance, TO:0000326 - leaf color	
22149	_		_	callose synthase			1	LOC_Os01g67364.1 a protein with a glucan synthase component that is predicted to be similar to CALLOSE SYNTHASE5 isoform X1.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os01g0899387	LOC_Os01g67364.1				GO:0002213 - defense response to insect	TO:0000261 - insect damage resistance	
22150	ALMT1 	OsALMT1	ALUMINUM-ACTIVATED MALATE TRANSPORTER 1	Aluminum-activated malate transporter 1	ALUMINUM-ACTIVATED MALATE TRANSPORTER 1		4	CAE01530.	 Biochemical character	Os04g0417000	LOC_Os04g34010.1				GO:0016021 - integral to membrane, GO:0015140 - malate transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane		PO:0009005 - root , PO:0025034 - leaf 
22151	ALMT2	OsALMT2	ALUMINUM-ACTIVATED MALATE TRANSPORTER 2	Aluminum-activated malate transporter 2	ALUMINUM-ACTIVATED MALATE TRANSPORTER 2		10	AAL86482.	 Biochemical character	Os10g0572100 	LOC_Os10g42180.1				GO:0015140 - malate transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane, GO:0016021 - integral to membrane		PO:0025034 - leaf 
22152	ALMT3	OsALMT3	ALUMINUM-ACTIVATED MALATE TRANSPORTER 3	Aluminum-activated malate transporter 3	ALUMINUM-ACTIVATED MALATE TRANSPORTER 3		2	BAD16367.	 Biochemical character	Os02g0730600 	LOC_Os02g49790.1				GO:0009705 - plant-type vacuole membrane, GO:0015140 - malate transmembrane transporter activity, GO:0016021 - integral to membrane		PO:0025034 - leaf , PO:0009005 - root 
22153	ALMT4	OsALMT4	ALUMINUM-ACTIVATED MALATE TRANSPORTER 4	Aluminum-activated malate transporter 4	ALUMINUM-ACTIVATED MALATE TRANSPORTER 4		1	XP_015618041. TO:0020096: mineral and ion transport trait. TO:0020091: manganese content. TO:0006043: boron content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0221600  	LOC_Os01g12210.1				GO:0016021 - integral to membrane, GO:0015140 - malate transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane, GO:0005886 - plasma membrane, GO:0009642 - response to light intensity, GO:0009751 - response to salicylic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009416 - response to light stimulus, GO:0006970 - response to osmotic stress	TO:0000163 - auxin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000073 - manganese sensitivity, TO:0000652 - leaf necrosis, TO:0000460 - light intensity sensitivity, TO:0000075 - light sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf , PO:0009001 - fruit , PO:0009005 - root , PO:0009046 - flower , PO:0009006 - shoot system 
22154	ALMT5	OsALMT5	ALUMINUM-ACTIVATED MALATE TRANSPORTER 5	Aluminum-activated malate transporter 5	ALUMINUM-ACTIVATED MALATE TRANSPORTER 5		1	BAD87020.	 Biochemical character	Os01g0737500   	LOC_Os01g53570.1				GO:0015140 - malate transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane, GO:0016021 - integral to membrane		
22155	ALMT6	OsALMT6	ALUMINUM-ACTIVATED MALATE TRANSPORTER 6	Aluminum-activated malate transporter 6	ALUMINUM-ACTIVATED MALATE TRANSPORTER 6		6	BAD54395.	 Biochemical character	Os06g0268800   	LOC_Os06g15779.1				GO:0015140 - malate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009705 - plant-type vacuole membrane		
22156	PAAB1-1	OsALMT7, ALMT7	PANICLE APICAL ABORTION 1-1	Aluminum-activated malate transporter 7, panicle apical abortion1-1	ALUMINUM-ACTIVATED MALATE TRANSPORTER 7	paab1-1	2	LOC_Os02g45160. BAD29455. TO:0000854: spikelet floret size.	 Biochemical character,  Reproductive organ - panicle,  Character as QTL - Yield and productivity	Os02g0673100   	LOC_Os02g45160.1				GO:0015140 - malate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0010229 - inflorescence development, GO:0005886 - plasma membrane, GO:0015743 - malate transport, GO:0009705 - plant-type vacuole membrane, GO:0012501 - programmed cell death	TO:0000040 - panicle length, TO:0000621 - inflorescence development trait, TO:0000605 - hydrogen peroxide content, TO:0000657 - spikelet anatomy and morphology trait, TO:0000396 - grain yield, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000447 - filled grain number	PO:0009005 - root , PO:0001083 - inflorescence development stage 
22157	ALMT8	OsALMT8	ALUMINUM-ACTIVATED MALATE TRANSPORTER 8	Aluminum-activated malate transporter 8	ALUMINUM-ACTIVATED MALATE TRANSPORTER 8		4	CAE02072.	 Biochemical character	Os04g0567200   	LOC_Os04g47930.1				GO:0009705 - plant-type vacuole membrane, GO:0015140 - malate transmembrane transporter activity, GO:0016021 - integral to membrane		
22158	ALMT9	OsALMT9	ALUMINUM-ACTIVATED MALATE TRANSPORTER 9	Aluminum-activated malate transporter 9	ALUMINUM-ACTIVATED MALATE TRANSPORTER 9		6	BAD32958.	 Biochemical character	Os06g0331900   	LOC_Os06g22600.1				GO:0016021 - integral to membrane, GO:0015140 - malate transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane		PO:0009005 - root 
22159	GLIP1	OsGLIP1	GDSL LIPASE 1	GDSL lipase 1	GDSL LIPASE 1		6	GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0129600 	LOC_Os06g03900.1, LOC_Os06g03890.1				GO:0019216 - regulation of lipid metabolic process, GO:0005789 - endoplasmic reticulum membrane, GO:0005811 - lipid particle, GO:0009751 - response to salicylic acid stimulus, GO:0055088 - lipid homeostasis, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0016298 - lipase activity	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009037 - lemma 
22160	NOG1		NUMBER OF GRAINS 1				1	LOC_Os01g54860. GO:0080167: response to larrikin. PO:0030123: panicle inflorescence.	 Biochemical character,  Character as QTL - Yield and productivity	Os01g0752200	LOC_Os01g54860.1				GO:0009753 - response to jasmonic acid stimulus, GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity, GO:0004300 - enoyl-CoA hydratase activity, GO:0031998 - regulation of fatty acid beta-oxidation, GO:0080140 - regulation of jasmonic acid metabolic process	TO:0000449 - grain yield per plant, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000447 - filled grain number	PO:0025034 - leaf 
22161	TSV3	OsObgC2, ObgC2, TSV3/OsObgC2	THERMO-SENSITIVE VIRESCENT 3	thermo-sensitive virescent 3, Spo0B-associated GTP-binding protein C2, Obg protein C2	OBG PROTEIN C2	tsv3	3	LOC_Os03g58540. Q851Q6.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0799700	LOC_Os03g58540.3, LOC_Os03g58540.2, LOC_Os03g58540.1				GO:0009409 - response to cold, GO:0005525 - GTP binding, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast	TO:0000303 - cold tolerance, TO:0000326 - leaf color, TO:0000495 - chlorophyll content	PO:0025034 - leaf 
22162	OBGC1	OsObgC1, ObgC1	OBG PROTEIN C1	Spo0B-associated GTP-binding protein C1, Obg protein C1	OBG PROTEIN C1	obgc1-d1, obgc1-d2, obgc1-t	7	LOC_Os07g47300. Q0D3S3. TO:0006060: leaf chlorosis. GO:1901259: chloroplast rRNA processing.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os07g0669200	LOC_Os07g47300.1				GO:0042254 - ribosome biogenesis, GO:0000287 - magnesium ion binding, GO:0009507 - chloroplast, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0009658 - chloroplast organization	TO:0000326 - leaf color	
22163	OBGM	OsObgM, ObgM	OBG PROTEIN M	Spo0B-associated GTP-binding protein M, Obg protein M	OBG PROTEIN M		11	LOC_Os11g47800. Q2QZ37.		Os11g0704300	LOC_Os11g47800.1				GO:0005525 - GTP binding, GO:0005739 - mitochondrion		
22164	MIR396D	miR396d, osa-miR396d, osa-MIR396d, OsmiR396d	MICRORNA396D	MICRORNA396d, osa-miRNA396d	_			OsmiR396d target genes: OsGRF6 and OsGRF10. OsMIR396d Is a Direct Target of OsBZR1. (Tang et al. 2018) GO:1900459: positive regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Other						GO:0035195 - gene silencing by miRNA, GO:0009742 - brassinosteroid mediated signaling, GO:0051511 - negative regulation of unidimensional cell growth, GO:0035068 - micro-ribonucleoprotein complex, GO:0051782 - negative regulation of cell division, GO:0016442 - RNA-induced silencing complex, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0006379 - mRNA cleavage, GO:0009740 - gibberellic acid mediated signaling	TO:0000207 - plant height, TO:0000145 - internode length, TO:0000206 - leaf angle	
22165	_	OsGATA3, GATA3	_	GATA transcription factor 3, GATA factor 3	_		2	LOC_Os02g56250.1	 Other	Os02g0806300	LOC_Os02g56250.1				GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
22166	_	OsGATA21, GATA21, OsGATA21a, OsGATA21b	_	GATA transcription factor 21, GATA factor 21	_		4	LOC_Os04g46020.1(OsGATA21a), LOC_Os04g46020.2 (OsGATA21b). GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085: RNA polymerase II transcription factor binding. GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0544500	LOC_Os04g46020.2, LOC_Os04g46020.1				GO:0030154 - cell differentiation, GO:0003682 - chromatin binding, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0005667 - transcription factor complex, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
22167	RPL23A	OsRPL23A	RIBOSOMAL PROTEIN L23A	ribosomal protein L23A, ribosomal protein large subunit 23A	RIBOSOMAL PROTEIN L23A		1	LOC_Os01g24690.1	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0348700	LOC_Os01g24690.3, LOC_Os01g24690.2, LOC_Os01g24690.1				GO:0009751 - response to salicylic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0006412 - translation, GO:0003723 - RNA binding, GO:0042742 - defense response to bacterium, GO:0022625 - cytosolic large ribosomal subunit, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0000027 - ribosomal large subunit assembly, GO:0009414 - response to water deprivation	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	PO:0020031 - radicle , PO:0009089 - endosperm , PO:0009046 - flower , PO:0020032 - plumule , PO:0020103 - flag leaf , PO:0009006 - shoot system , PO:0009005 - root 
22168	_	RPS4	_	ribosomal protein S4, ribosomal protein small subunit 4	_		1	LOC_Os01g25610.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0358400	LOC_Os01g25610.1				GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0042542 - response to hydrogen peroxide, GO:0003723 - RNA binding, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0019843 - rRNA binding, GO:0022627 - cytosolic small ribosomal subunit, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	
22169	_	RPS5	_	ribosomal protein S5, ribosomal protein small subunit 5	_		1	LOC_Os01g01060.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0100700	LOC_Os01g01060.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0019843 - rRNA binding, GO:0042542 - response to hydrogen peroxide, GO:0050832 - defense response to fungus, GO:0000028 - ribosomal small subunit assembly, GO:0003729 - mRNA binding, GO:0003735 - structural constituent of ribosome	TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
22170	_	RPS6, OsRPS6	_	ribosomal protein S6, ribosomal protein small subunit 6	_		1	LOC_Os01g12090.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0220300	LOC_Os01g12090.1				GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005840 - ribosome, GO:0050832 - defense response to fungus, GO:0042542 - response to hydrogen peroxide, GO:0070181 - SSU rRNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0003735 - structural constituent of ribosome	TO:0000255 - sheath blight disease resistance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
22171	_	RPS7, OsRPS7	_	ribosomal protein S7, ribosomal protein small subunit 7	_		2	LOC_Os02g21900.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0324500	LOC_Os02g21900.1				GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
22172	RPS7A	RPS7a, OsRPS7a	RIBOSOMAL PROTEIN S7A	ribosomal protein S7a, ribosomal protein small subunit 7a	RIBOSOMAL PROTEIN S7A		3	LOC_Os03g18570. GO:0002181: cytoplasmic translation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0297100	LOC_Os03g18570.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0022627 - cytosolic small ribosomal subunit, GO:0006364 - rRNA processing, GO:0009737 - response to abscisic acid stimulus, GO:0030686 - 90S preribosome, GO:0009414 - response to water deprivation, GO:0032040 - small-subunit processome, GO:0042274 - ribosomal small subunit biogenesis, GO:0003735 - structural constituent of ribosome, GO:0042542 - response to hydrogen peroxide	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	
22173	_	RPS9, OsRPS9	_	ribosomal protein S9, ribosomal protein small subunit 9	_		7	LOC_Os07g43510.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os07g0628400	LOC_Os07g43510.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
22174	RPS9-2	OsRPS9-2	RIBOSOMAL PROTEIN S9-2	ribosomal protein S9-2, ribosomal protein small subunit 9-2	RIBOSOMAL PROTEIN S9-2		3	LOC_Os03g05980.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0154700	LOC_Os03g05980.2, LOC_Os03g05980.1				GO:0019843 - rRNA binding, GO:0006412 - translation, GO:0022627 - cytosolic small ribosomal subunit, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0003735 - structural constituent of ribosome, GO:0045903 - positive regulation of translational fidelity, GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
22175	_	RPS10, OsRPS10	_	ribosomal protein S10, ribosomal protein small subunit 10	_		1	LOC_Os01g73160.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0962600	LOC_Os01g73160.1				GO:0000028 - ribosomal small subunit assembly, GO:0042542 - response to hydrogen peroxide, GO:0050832 - defense response to fungus, GO:0022627 - cytosolic small ribosomal subunit, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding	TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
22176	RPS10A	RPS10a, OsRPS10a	RIBOSOMAL PROTEIN S10A	ribosomal protein S10a, ribosomal protein small subunit 10a	RIBOSOMAL PROTEIN S10A		2	LOC_Os02g34460. P0DKK8.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0549600	LOC_Os02g34460.2				GO:0042742 - defense response to bacterium, GO:0005840 - ribosome, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0050832 - defense response to fungus	TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
22177	_	RPS13, OsRPS13	_	ribosomal protein S13, ribosomal protein small subunit 13	_		7	LOC_Os07g38540.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os07g0572900	LOC_Os07g38540.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0005730 - nucleolus, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0070181 - SSU rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	
22178	RPS15A	RPS15a, OsRPS15a	RIBOSOMAL PROTEIN S15A	ribosomal protein S15a, ribosomal protein small subunit 15a	RIBOSOMAL PROTEIN S15A		2	LOC_Os02g27760.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0478600	LOC_Os02g27760.1				GO:0006412 - translation, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome	TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
22179	RPS17	OsRPS17	RIBOSOMAL PROTEIN S17	ribosomal protein S17, ribosomal protein small subunit 17	RIBOSOMAL PROTEIN S17		3	LOC_Os03g01900.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0109500	LOC_Os03g01900.1				GO:0006412 - translation, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0000028 - ribosomal small subunit assembly, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity	
22180	_	RPS18, OsRPS18	_	ribosomal protein S18, ribosomal protein small subunit 18	_		3	LOC_Os03g58050.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0794700	LOC_Os03g58050.1				GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0006412 - translation, GO:0050832 - defense response to fungus, GO:0005829 - cytosol, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0015935 - small ribosomal subunit, GO:0042254 - ribosome biogenesis	TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance	
22181	RPS18A	RPS18a, OsRPS18a	RIBOSOMAL PROTEIN S18A	ribosomal protein S18a, ribosomal protein small subunit 18a	RIBOSOMAL PROTEIN S18A		7	LOC_Os07g07719.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os07g0173700	LOC_Os07g07719.1				GO:0005829 - cytosol, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0015935 - small ribosomal subunit, GO:0042254 - ribosome biogenesis, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome	TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance	
22182	RPS18B	RPS18b	RIBOSOMAL PROTEIN S18B	ribosomal protein S18b	RIBOSOMAL PROTEIN S18B		7	LOC_Os07g07770.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os07g0174200	LOC_Os07g07770.1				GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
22183	_	RPS21, OsRPS21	_	ribosomal protein S21, ribosomal protein small subunit 21	_		3	LOC_Os03g46490.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0667800	LOC_Os03g46490.1				GO:0006412 - translation, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress	
22184	RPS23A	RPS23a, OsRPS23a	RIBOSOMAL PROTEIN S23A	ribosomal protein S23a, ribosomal protein small subunit 23a	RIBOSOMAL PROTEIN S23A		10	LOC_Os10g20910.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os10g0350001	LOC_Os10g20910.1				GO:0042742 - defense response to bacterium, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
22185	_	RPS25, OsRPS25	_	ribosomal protein S25, ribosomal protein small subunit 25	_		8	LOC_Os08g44480.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os08g0559200	LOC_Os08g44480.3, LOC_Os08g44480.1				GO:0009737 - response to abscisic acid stimulus, GO:0005840 - ribosome, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0050832 - defense response to fungus	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
22186	RPS26	OsRPS26	RIBOSOMAL PROTEIN S26	ribosomal protein S26, ribosomal protein small subunit 26	RIBOSOMAL PROTEIN S26		1	LOC_Os01g60790. P49216.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0823300	LOC_Os01g60790.1				GO:0003735 - structural constituent of ribosome, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0022627 - cytosolic small ribosomal subunit, GO:0003729 - mRNA binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress	
22187	RPS27	OsRPS27	RIBOSOMAL PROTEIN S27	ribosomal protein S27, ribosomal protein small subunit 27	RIBOSOMAL PROTEIN S27		4	LOC_Os04g27860.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os04g0346100	LOC_Os04g27860.1				GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0022627 - cytosolic small ribosomal subunit, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0042742 - defense response to bacterium, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0000028 - ribosomal small subunit assembly	TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	
22188	RPS29	OsRPS29	RIBOSOMAL PROTEIN S29	ribosomal protein S29, ribosomal protein small subunit 29	RIBOSOMAL PROTEIN S29		3	LOC_Os03g56241.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0773150	LOC_Os03g56241.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0009737 - response to abscisic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
22189	RPS30	OsRPS30	RIBOSOMAL PROTEIN S30	ribosomal protein S30, ribosomal protein small subunit 30	RIBOSOMAL PROTEIN S30		2	LOC_Os02g56014.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0804100	LOC_Os02g56014.1				GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
22190	RPL4	OsRPL4	RIBOSOMAL PROTEIN L4	ribosomal protein L4, ribosomal protein large subunit 4	RIBOSOMAL PROTEIN L4		3	LOC_Os03g58204.1 GO:0002181: cytoplasmic translation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0796501	LOC_Os03g58204.2, LOC_Os03g58204.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0003723 - RNA binding	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress	PO:0009005 - root , PO:0020032 - plumule , PO:0020031 - radicle , PO:0009006 - shoot system , PO:0020103 - flag leaf , PO:0009046 - flower 
22191	_	OsRPL5, RPL5	_	ribosomal protein L5, ribosomal protein large subunit 5	_		5	LOC_Os05g11710.1 Q0DK10. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os05g0207300	LOC_Os05g11710.1				GO:0019843 - rRNA binding, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0005634 - nucleus, GO:0022625 - cytosolic large ribosomal subunit, GO:0003723 - RNA binding, GO:0000027 - ribosomal large subunit assembly	TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0000003 - whole plant , PO:0009006 - shoot system , PO:0009005 - root , PO:0020103 - flag leaf , PO:0020031 - radicle , PO:0020032 - plumule , PO:0009089 - endosperm , PO:0009009 - plant embryo 
22192	_	OsRPL6, RPL6	_	ribosomal protein L6, ribosomal protein large subunit 6	_		4	LOC_Os04g39700.1 GO:0002181: cytoplasmic translation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os04g0473400	LOC_Os04g39700.1				GO:0000027 - ribosomal large subunit assembly, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation	TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	PO:0020031 - radicle , PO:0020032 - plumule , PO:0009006 - shoot system , PO:0009005 - root , PO:0020103 - flag leaf 
22193	_	OsRPL7/L12, RPL7/L12, RPL7, RPL12, OsRPL7, OsRPL12	_	ribosomal protein L7/L12, ribosomal protein large subunit 7/12	_		2	LOC_Os02g10540.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0198900	LOC_Os02g10540.1				GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006839 - mitochondrial transport, GO:0005762 - mitochondrial large ribosomal subunit, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0032543 - mitochondrial translation, GO:0003735 - structural constituent of ribosome, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide	TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	PO:0009005 - root , PO:0020032 - plumule , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009006 - shoot system 
22194	RPL13A	OsRPL13a, RPL13a	RIBOSOMAL PROTEIN L13A	ribosomal protein L13a, ribosomal protein large subunit 13a	RIBOSOMAL PROTEIN L13A		7	LOC_Os07g01870.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os07g0109500	LOC_Os07g01870.2, LOC_Os07g01870.1				GO:0003735 - structural constituent of ribosome, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0022625 - cytosolic large ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0003729 - mRNA binding, GO:0009414 - response to water deprivation, GO:0006412 - translation	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0020103 - flag leaf , PO:0020032 - plumule , PO:0009046 - flower , PO:0009006 - shoot system , PO:0009005 - root , PO:0020031 - radicle 
22195	_	OsRPL14, RPL14	_	ribosomal protein L14, ribosomal protein large subunit 14			2	LOC_Os02g40880.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0622300	LOC_Os02g40880.2, LOC_Os02g40880.1				GO:0009409 - response to cold, GO:0003735 - structural constituent of ribosome, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0009753 - response to jasmonic acid stimulus, GO:0042273 - ribosomal large subunit biogenesis, GO:0042542 - response to hydrogen peroxide, GO:0003723 - RNA binding, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat	TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	PO:0020103 - flag leaf , PO:0009046 - flower , PO:0009089 - endosperm , PO:0020032 - plumule , PO:0009005 - root , PO:0009006 - shoot system 
22196	RPL15	OsRPL15	RIBOSOMAL PROTEIN L15	ribosomal protein L15, ribosomal protein large subunit 15	RIBOSOMAL PROTEIN L15		3	LOC_Os03g40180.1 GO:0002181: cytoplasmic translation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0598800	LOC_Os03g40180.2, LOC_Os03g40180.1				GO:0003723 - RNA binding, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0042542 - response to hydrogen peroxide	TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009005 - root 
22197	RPL21.2	OsRPL21.2	RIBOSOMAL PROTEIN L21.2	ribosomal protein L21.2, ribosomal protein large subunit 21.2	RIBOSOMAL PROTEIN L21.2		10	LOC_Os10g32820.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os10g0465800	LOC_Os10g32820.1				GO:0042742 - defense response to bacterium, GO:0022625 - cytosolic large ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009409 - response to cold	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009009 - plant embryo , PO:0020103 - flag leaf , PO:0009006 - shoot system , PO:0009005 - root , PO:0009089 - endosperm 
22198	RPL26.1	OsRPL26.1	RIBOSOMAL PROTEIN L26.1	ribosomal protein L26.1, ribosomal protein large subunit 26.1	RIBOSOMAL PROTEIN L26.1		11	LOC_Os11g05370.1 GO:0002181: cytoplasmic translation. PO:0030117: spike inflorescence.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Other	Os11g0151300	LOC_Os11g05370.1				GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0006412 - translation, GO:0009751 - response to salicylic acid stimulus, GO:0003723 - RNA binding, GO:0042542 - response to hydrogen peroxide, GO:0042273 - ribosomal large subunit biogenesis, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit	TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	PO:0009046 - flower , PO:0025034 - leaf , PO:0009006 - shoot system 
22199	_	OsRPL27.3, RPL27.3	_	ribosomal protein L27.3, ribosomal protein large subunit 27.3			2	LOC_Os02g18380.1	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0284600	LOC_Os02g18380.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	PO:0009089 - endosperm , PO:0009046 - flower , PO:0009006 - shoot system 
22200	RPL28	OsRPL28	RIBOSOMAL PROTEIN L28	ribosomal protein L28, ribosomal protein large subunit 28	RIBOSOMAL PROTEIN L28		7	LOC_Os07g36090.3	 Tolerance and resistance - Stress tolerance,  Other	Os07g0544900	LOC_Os07g36090.3, LOC_Os07g36090.2, LOC_Os07g36090.1				GO:0042542 - response to hydrogen peroxide, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006412 - translation, GO:0009751 - response to salicylic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0005762 - mitochondrial large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
22201	RPL29	OsRPL29	RIBOSOMAL PROTEIN L29	ribosomal protein L29, ribosomal protein large subunit 29	RIBOSOMAL PROTEIN L29		6	LOC_Os06g51530.1	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os06g0732000	LOC_Os06g51530.1				GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0003729 - mRNA binding, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0006412 - translation, GO:0009408 - response to heat, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009046 - flower 
22202	RPL30E	OsRPL30e, RPL30e	RIBOSOMAL PROTEIN L30E	ribosomal protein L30e, ribosomal protein large subunit 30e	RIBOSOMAL PROTEIN L30E		7	LOC_Os07g44230.1	 Tolerance and resistance - Stress tolerance,  Other	Os07g0636400	LOC_Os07g44230.2, LOC_Os07g44230.1				GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005655 - nucleolar ribonuclease P complex, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity	PO:0009006 - shoot system , PO:0009005 - root 
22203	RPL34	OsRPL34	RIBOSOMAL PROTEIN L34	ribosomal protein L34, ribosomal protein large subunit 34	RIBOSOMAL PROTEIN L34		9	LOC_Os09g24690.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os09g0413500	LOC_Os09g24690.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0042542 - response to hydrogen peroxide, GO:0006412 - translation	TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009006 - shoot system , PO:0009005 - root , PO:0009089 - endosperm , PO:0009046 - flower , PO:0009009 - plant embryo , PO:0020031 - radicle , PO:0020103 - flag leaf 
22204	RPL35A.3	OsRPL35a.3, RPL35a.3	RIBOSOMAL PROTEIN L35A.3	ribosomal protein L35a.3, ribosomal protein large subunit 35a.3	RIBOSOMAL PROTEIN L35A.3		5	LOC_Os05g48310.1 GO:0002181: cytoplasmic translation. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os05g0556900	LOC_Os05g48310.2, LOC_Os05g48310.1				GO:0006412 - translation, GO:0042742 - defense response to bacterium, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0022625 - cytosolic large ribosomal subunit, GO:0042273 - ribosomal large subunit biogenesis	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009009 - plant embryo , PO:0020031 - radicle , PO:0009006 - shoot system , PO:0009005 - root , PO:0020103 - flag leaf 
22205	RPL36.2	OsRPL36.2	RIBOSOMAL PROTEIN L36.2	ribosomal protein  L36.2, ribosomal protein large subunit 36.2	RIBOSOMAL PROTEIN L36.2		1	LOC_Os01g62350.1 GO:0002181: cytoplasmic translation. PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0840700	LOC_Os01g62350.1				GO:0009409 - response to cold, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	PO:0025034 - leaf , PO:0009006 - shoot system 
22206	RPL37	OsRPL37	RIBOSOMAL PROTEIN L37	ribosomal protein  L37, ribosomal protein large subunit 37	RIBOSOMAL PROTEIN L37		2	LOC_Os02g56990.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0815000	LOC_Os02g56990.1				GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0009005 - root 
22207	RPL38	OsRPL38	RIBOSOMAL PROTEIN L38	ribosomal protein  L38, ribosomal protein large subunit 38	RIBOSOMAL PROTEIN L38		11	LOC_Os11g24610.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os11g0433900	LOC_Os11g24610.1				GO:0009408 - response to heat, GO:0022618 - ribonucleoprotein complex assembly, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009409 - response to cold, GO:0022625 - cytosolic large ribosomal subunit, GO:0042542 - response to hydrogen peroxide	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0020103 - flag leaf , PO:0020031 - radicle , PO:0009005 - root , PO:0009009 - plant embryo , PO:0009006 - shoot system 
22208	RPL44	OsRPL44	RIBOSOMAL PROTEIN L44	ribosomal protein  L44, ribosomal protein large subunit 44	RIBOSOMAL PROTEIN L44		7	LOC_Os07g33898.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0523300	LOC_Os07g33898.1				GO:0006412 - translation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	PO:0009089 - endosperm , PO:0020103 - flag leaf , PO:0009006 - shoot system , PO:0009005 - root , PO:0020031 - radicle 
22209	RPL51	OsRPL51	RIBOSOMAL PROTEIN L51	ribosomal protein  L51, ribosomal protein large subunit 51	RIBOSOMAL PROTEIN L51		3	LOC_Os03g10930.2 PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0207250	LOC_Os03g10930.2, LOC_Os03g10930.1				GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005762 - mitochondrial large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0009005 - root , PO:0020031 - radicle 
22210	SPLHM47	splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1	SPOTTED-LEAF HM47	spotted-leaf HM47, OsPELOTA, PELOTA, lesion mimic leaf 1		pelota, lml1, lml1-1, lml1-2, lml1-3	4	LOC_Os04g56480. a spotted-leaf mutant pelota. a paralogue to eukaryotic release factor 1 (eRF1). GO:0070966: nuclear-transcribed mRNA catabolic process, no-go decay. GO:1900425: negative regulation of defense response to bacterium. GO:2000031: regulation of salicylic acid mediated signaling pathway. PO:0030123: panicle inflorescence. GO:2000280: regulation of root development. TO:0020103: adventitious root length. TO:0000975: grain width. TO:1000022: anther morphology trait. PO:0030123: panicle inflorescence. GO:1904821: chloroplast disassembly.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0659900	LOC_Os04g56480.3, LOC_Os04g56480.2, LOC_Os04g56480.1				GO:0048366 - leaf development, GO:0005739 - mitochondrion, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0070651 - nonfunctional rRNA decay, GO:0009416 - response to light stimulus, GO:0010150 - leaf senescence, GO:0060548 - negative regulation of cell death, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0010337 - regulation of salicylic acid metabolic process, GO:0006412 - translation, GO:0071025 - RNA surveillance, GO:0048364 - root development, GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay, GO:0043022 - ribosome binding, GO:0009555 - pollen development, GO:0032790 - ribosome disassembly, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009648 - photoperiodism, GO:0009266 - response to temperature stimulus	TO:0000293 - chlorophyll-a content, TO:0000447 - filled grain number, TO:0000339 - stem thickness, TO:0000040 - panicle length, TO:0000145 - internode length, TO:0000074 - blast disease, TO:0000180 - spikelet fertility, TO:0000496 - carotenoid content, TO:0000075 - light sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0002668 - jasmonic acid content, TO:0000605 - hydrogen peroxide content, TO:0000063 - mimic response, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0000421 - pollen fertility, TO:0000187 - anther color, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000326 - leaf color, TO:0000432 - temperature response trait, TO:0000295 - chlorophyll-b content, TO:0000734 - grain length, TO:0000592 - 1000-dehulled grain weight, TO:0000249 - leaf senescence	PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root , PO:0020138 - leaf lamina vein , PO:0025281 - pollen , PO:0009053 - peduncle , PO:0009039 - glume , PO:0009073 - stigma , PO:0009066 - anther , PO:0009037 - lemma , PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0000293 - guard cell , PO:0000025 - root tip , PO:0000026 - primary root tip , PO:0001050 - leaf development stage , PO:0007520 - root development stage , PO:0001007 - pollen development stage 
22211	UGT707A5	OsUGT707A5	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A5	UDP-dependent glycosyltransferase 707A5	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A5		7	LOC_Os07g32010.	 Biochemical character	Os07g0503300 	LOC_Os07g32010.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		
22212	UGT707A4	OsUGT707A4	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A4	UDP-dependent glycosyltransferase 707A4	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A4		7	LOC_Os07g31960.	 Biochemical character	Os07g0502900 	LOC_Os07g31960.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process		
22213	UGT706E1	OsUGT706E1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E1	UDP-dependent glycosyltransferase 706E1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E1		1	LOC_Os01g53330.	 Biochemical character	Os01g0734600 	LOC_Os01g53330.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity		
22214	UGT706F1	OsUGT706F1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706F1	UDP-dependent glycosyltransferase 706F1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706F1		1	LOC_Os01g53350.	 Biochemical character	Os01g0734800 	LOC_Os01g53350.2, LOC_Os01g53350.1				GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
22215	UGT88C3	OsUGT88C3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C3	UDP-dependent glycosyltransferase 88C3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C3		1	LOC_Os01g53370.	 Biochemical character	Os01g0735300 	LOC_Os01g53370.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process		
22216	UGT88C2	OsUGT88C2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C2	UDP-dependent glycosyltransferase 88C2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C2		1	LOC_Os01g53390.	 Biochemical character	Os01g0735500 	LOC_Os01g53390.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0016021 - integral to membrane, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		
22217	UGT706B1	OsUGT706B1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706B1	UDP-dependent glycosyltransferase 706B1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706B1		1	LOC_Os01g53420.	 Biochemical character	Os01g0735900 	LOC_Os01g53420.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		
22218	UGT705A1	OsUGT705A1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A1	UDP-dependent glycosyltransferase 705A1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A1		5	LOC_Os05g42020.	 Biochemical character	Os05g0499600 	LOC_Os05g42020.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		
22219	UGT705A2	OsUGT705A2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A2	UDP-dependent glycosyltransferase 705A2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A2		5	LOC_Os05g42060.	 Biochemical character	Os05g0500000 	LOC_Os05g42060.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
22220	UGT706D3	OsUGT706D3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D3	UDP-dependent glycosyltransferase 706D3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D3		5	LOC_Os05g45080.	 Biochemical character	Os05g0526800 	LOC_Os05g45080.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity		
22221	UGT706D2	OsUGT706D2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D2	UDP-dependent glycosyltransferase 706D2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D2		5	LOC_Os05g45090.	 Biochemical character	Os05g0526900 	LOC_Os05g45090.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		
22222	UGT706C3	OsUGT706C3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C3	UDP-dependent glycosyltransferase 706C3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C3		5	LOC_Os05g45100.	 Biochemical character	Os05g0527000 	LOC_Os05g45100.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		
22223	UGT706C4	OsUGT706C4	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C4	UDP-dependent glycosyltransferase 706C4	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C4		5	LOC_Os05g45110.	 Biochemical character	Os05g0527100 	LOC_Os05g45110.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		
22224	UGT706J1	OsUGT706J1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706J1	UDP-dependent glycosyltransferase 706J1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706J1		5	LOC_Os05g45150.	 Biochemical character	Os05g0527600 	LOC_Os05g45150.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process		
22225	UGT706G6	OsUGT706G6	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706G6	UDP-dependent glycosyltransferase 706G6	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706G6		5	LOC_Os05g45180.	 Biochemical character	Os05g0527800 	LOC_Os05g45180.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
22226	UGT706E2	OsUGT706E2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E2	UDP-dependent glycosyltransferase 706E2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E2		5	LOC_Os05g45200.	 Biochemical character	Os05g0527900 	LOC_Os05g45200.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
22227	GH10-3	OsGH10-3	GLYCOSIDE HYDROLASE 10-3	glycoside hydrolase 10-3	GLYCOSIDE HYDROLASE 10-3				 Biochemical character								
22228	GH10-4	OsGH10-4	GLYCOSIDE HYDROLASE 10-4	glycoside hydrolase 10-4	GLYCOSIDE HYDROLASE 10-4				 Biochemical character								
22229	GH10-5	OsGH10-5	GLYCOSIDE HYDROLASE 10-5	glycoside hydrolase 10-5	GLYCOSIDE HYDROLASE 10-5				 Biochemical character								
22230	GH10-6	OsGH10-6	GLYCOSIDE HYDROLASE 10-6	glycoside hydrolase 10-6	GLYCOSIDE HYDROLASE 10-6				 Biochemical character								
22231	GH10-7	OsGH10-7	GLYCOSIDE HYDROLASE 10-7	glycoside hydrolase 10-7	GLYCOSIDE HYDROLASE 10-7				 Biochemical character								
22232	GA2OX11	OsGA2ox11, 2-ODD31, Os2-ODD31, 2ODD31, Os2ODD31	GIBBERELLIN 2-OXIDASE 11	2-oxoglutarate-dependent dioxygenase 31	GIBBERELLIN 2-OXIDASE 11		4	LOC_Os04g33360.	 Biochemical character	Os04g0407800	LOC_Os04g33360.1				GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity		
22233	D-LDH 	OsD-LDH	D-LACTATE DEHYDROGENASE 	D-lactate dehydrogenase	D-LACTATE DEHYDROGENASE 		7	LOC_Os07g06890.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0163000	LOC_Os07g06890.1				GO:0050660 - FAD binding, GO:0009438 - methylglyoxal metabolic process, GO:0009651 - response to salt stress, GO:0051595 - response to methylglyoxal, GO:0005739 - mitochondrion, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors	TO:0006001 - salt tolerance	PO:0020103 - flag leaf 
22234	LESR		LOW EXPOSURE STIGMA RATE	low exposure stigma rate		lesr	10	The mapping data indicated that the LESR locus was located within an interval of 0.25 Mb on chromosome 10 flanked by InDel-2 (13.69 Mb) and InDel-4 (13.94 Mb). Within this region, 7 genes exhibited base differences between the two parents, of which two genes (Os10g0404566, Os10g0407000) differed between the mutant and the wild type plants (Ma et al. 2018).	 Reproductive organ - Spikelet, flower, glume, awn							TO:0000044 - stigma exsertion	
22235	SEC3A	OsSEC3A	EXOCYST SUBUNIT SEC3A	exocyst subunit SEC3A	EXOCYST SUBUNIT SEC3A	Ossec3a	3	LOC_Os03g42750. GO:1900150: regulation of defense response to fungus. 0000207	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os03g0625700	LOC_Os03g42750.2, LOC_Os03g42750.1				GO:0005886 - plasma membrane, GO:0000145 - exocyst, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0006887 - exocytosis, GO:0006893 - Golgi to plasma membrane transport, GO:0017049 - GTP-Rho binding, GO:0051601 - exocyst localization, GO:0050832 - defense response to fungus, GO:0060548 - negative regulation of cell death, GO:0010730 - negative regulation of hydrogen peroxide biosynthetic process	TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000180 - spikelet fertility, TO:0000592 - 1000-dehulled grain weight, TO:0000346 - tiller number, TO:0000040 - panicle length, TO:0000063 - mimic response, TO:0000207 - plant height	
22236	_		_	Putative glucose-6-phosphate isomerase			9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0465600	LOC_Os09g29070.1				GO:0004347 - glucose-6-phosphate isomerase activity, GO:0006096 - glycolysis, GO:0006094 - gluconeogenesis	TO:0000031 - silicon sensitivity	
22237	IMPA1B	Imp3, OsImpalpha1b, Impalpha1b	IMPORTIN ALPHA 1B	Importin alpha 1b, importin alpha-1b	IMPORTIN ALPHA 1B		5	Q9SLX0. AK100133. GO:0061608: nuclear import signal receptor activity. a cytoplasm/nuclear shuttle protein.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0155601	LOC_Os05g06350.1				GO:0042742 - defense response to bacterium, GO:0008139 - nuclear localization sequence binding, GO:0008565 - protein transporter activity, GO:0006607 - NLS-bearing substrate import into nucleus, GO:0005829 - cytosol, GO:0005643 - nuclear pore, GO:0005654 - nucleoplasm, GO:0048471 - perinuclear region of cytoplasm	TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000031 - silicon sensitivity	
22238	CCR3	OsCCR3	CINNAMOYL-COA REDUCTASE 3	Cinnamoyl-CoA reductase 3	CINNAMOYL-COA REDUCTASE 3		10	LOC_Os10g42620.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0576900 	LOC_Os10g42620.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009411 - response to UV, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0006001 - salt tolerance	
22239	CCR4	OsCCR4, OsCCR1, CCR1	CINNAMOYL-COA REDUCTASE 4	Cinnamoyl-CoA reductase 4	CINNAMOYL-COA REDUCTASE 4		1	LOC_Os01g18110. OsCCR1 in Borah & Khurana 2018. 	 Biochemical character	Os01g0283600 	LOC_Os01g18110.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
22240	CCR5	OsCCR5, OsCCR2, CCR2	CINNAMOYL-COA REDUCTASE 5	Cinnamoyl-CoA reductase 5	CINNAMOYL-COA REDUCTASE 5		1	LOC_Os01g18120. OsCCR2 in Borah & Khurana 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0283700 	LOC_Os01g18120.1				GO:0050832 - defense response to fungus, GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity	TO:0000074 - blast disease	
22241	CCR6	OsCCR6	CINNAMOYL-COA REDUCTASE 6	Cinnamoyl-CoA reductase 6	CINNAMOYL-COA REDUCTASE 6		1	LOC_Os01g61230.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0828100 	LOC_Os01g61230.1				GO:0009409 - response to cold, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding	TO:0000303 - cold tolerance	
22242	CCR7	OsCCR7	CINNAMOYL-COA REDUCTASE 7	Cinnamoyl-CoA reductase 7	CINNAMOYL-COA REDUCTASE 7		6	LOC_Os06g41840.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0623600 	LOC_Os06g41840.4, LOC_Os06g41840.3, LOC_Os06g41840.2, LOC_Os06g41840.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
22243	CCR8	OsCCR8	CINNAMOYL-COA REDUCTASE 8	Cinnamoyl-CoA reductase 8	CINNAMOYL-COA REDUCTASE 8		6	LOC_Os06g41810.	 Biochemical character	Os06g0623300 	LOC_Os06g41810.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
22244	CCR11	OsCCR11	CINNAMOYL-COA REDUCTASE 11	Cinnamoyl-CoA reductase 11	CINNAMOYL-COA REDUCTASE 11		2	LOC_Os02g56720.	 Biochemical character	Os02g0812000 	LOC_Os02g56720.2				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
22245	CCR13	OsCCR13	CINNAMOYL-COA REDUCTASE 13	Cinnamoyl-CoA reductase 13	CINNAMOYL-COA REDUCTASE 13		2	LOC_Os02g56690.	 Biochemical character	Os02g0811600 	LOC_Os02g56690.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
22246	CCR16	OsCCR16	CINNAMOYL-COA REDUCTASE 16	Cinnamoyl-CoA reductase 16	CINNAMOYL-COA REDUCTASE 16		9	LOC_Os09g31502.	 Biochemical character	Os09g0491820  	LOC_Os09g31502.4, LOC_Os09g31502.2, LOC_Os09g31502.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding		
22247	CCR17	OsCCR17	CINNAMOYL-COA REDUCTASE 17	Cinnamoyl-CoA reductase 17	CINNAMOYL-COA REDUCTASE 17		9	LOC_Os09g04050.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0127300  	LOC_Os09g04050.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance	
22248	CCR22	OsCCR22	CINNAMOYL-COA REDUCTASE 22	Cinnamoyl-CoA reductase 22	CINNAMOYL-COA REDUCTASE 22		3	LOC_Os03g60380.	 Biochemical character	Os03g0818200  	LOC_Os03g60380.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding		
22249	CCR23	OsCCR23	CINNAMOYL-COA REDUCTASE 23	Cinnamoyl-CoA reductase 23	CINNAMOYL-COA REDUCTASE 23		5	LOC_Os05g50250.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0578500  	LOC_Os05g50250.1				GO:0009411 - response to UV, GO:0009409 - response to cold, GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity, GO:0006694 - steroid biosynthetic process	TO:0000160 - UV light sensitivity, TO:0000303 - cold tolerance	
22250	CCR24	OsCCR24	CINNAMOYL-COA REDUCTASE 24	Cinnamoyl-CoA reductase 24	CINNAMOYL-COA REDUCTASE 24		9	LOC_Os09g08720.	 Biochemical character	Os09g0262000  	LOC_Os09g08720.1				GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity, GO:0006694 - steroid biosynthetic process, GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
22251	CCR26	OsCCR26	CINNAMOYL-COA REDUCTASE 26	Cinnamoyl-CoA reductase 26	CINNAMOYL-COA REDUCTASE 26		1	LOC_Os01g74660.	 Biochemical character	Os01g0978400  	LOC_Os01g74660.1				GO:0003824 - catalytic activity, GO:0005886 - plasma membrane, GO:0050662 - coenzyme binding		
22252	CCR27	OsCCR27	CINNAMOYL-COA REDUCTASE 27	Cinnamoyl-CoA reductase 27	CINNAMOYL-COA REDUCTASE 27		3	LOC_Os03g60279.	 Biochemical character	Os03g0817400  	LOC_Os03g60279.1						
22253	CCR28	OsCCR28	CINNAMOYL-COA REDUCTASE 28	Cinnamoyl-CoA reductase 28	CINNAMOYL-COA REDUCTASE 28		6	LOC_Os06g41800.	 Biochemical character	Os06g0623200  	LOC_Os06g41800.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding		
22254	CCR29	OsCCR29	CINNAMOYL-COA REDUCTASE 29	Cinnamoyl-CoA reductase 29	CINNAMOYL-COA REDUCTASE 29		8	LOC_Os08g08500.	 Biochemical character	Os08g0183900  	LOC_Os08g08500.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding		
22255	CCR30	OsCCR30	CINNAMOYL-COA REDUCTASE 30	Cinnamoyl-CoA reductase 30	CINNAMOYL-COA REDUCTASE 30		9	LOC_Os09g09230.	 Biochemical character		LOC_Os09g09230						
22256	CCR31	OsCCR31	CINNAMOYL-COA REDUCTASE 31	Cinnamoyl-CoA reductase 31	CINNAMOYL-COA REDUCTASE 31		9	LOC_Os09g09270.	 Biochemical character		LOC_Os09g09270						
22257	CCR32	OsCCR32	CINNAMOYL-COA REDUCTASE 32	Cinnamoyl-CoA reductase 32	CINNAMOYL-COA REDUCTASE 32		9	LOC_Os09g31498.	 Biochemical character	Os09g0491822	LOC_Os09g31498.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding		
22258	CCR33	OsCCR33	CINNAMOYL-COA REDUCTASE 33	Cinnamoyl-CoA reductase 33	CINNAMOYL-COA REDUCTASE 33		9	LOC_Os09g31506.	 Biochemical character		LOC_Os09g31506						
22260	CCR34	OsCCR34	CINNAMOYL-COA REDUCTASE 34	Cinnamoyl-CoA reductase 34	CINNAMOYL-COA REDUCTASE 34		9	LOC_Os09g31518.	 Biochemical character	Os09g0491868	LOC_Os09g31518.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
22261	CCR35	OsCCR35	CINNAMOYL-COA REDUCTASE 35	Cinnamoyl-CoA reductase 35	CINNAMOYL-COA REDUCTASE 35		9	LOC_Os09g31522.	 Biochemical character,  Tolerance and resistance - Stress tolerance		LOC_Os09g31522				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22262	LIL1		LIGHT-INDUCED LESION MIMIC MUTANT 1	light-induced lesion mimic mutant 1			7	LOC_Os07g30510. a putative cysteine-rich receptor-like kinase (CRK).	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0488400	LOC_Os07g30510.1				GO:0050832 - defense response to fungus, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009416 - response to light stimulus, GO:0043067 - regulation of programmed cell death	TO:0000063 - mimic response, TO:0000207 - plant height, TO:0000075 - light sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease	
22263	BON1 	OsBON1	BONZAI 1				2	closely related to Arabidopsis BON1. copine.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0521300 	LOC_Os02g32160.1				GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0005544 - calcium-dependent phospholipid binding, GO:0009408 - response to heat, GO:0060548 - negative regulation of cell death	TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000259 - heat tolerance, TO:0000207 - plant height	PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0020104 - leaf sheath 
22264	BON3	OsBON3	BONZAI 3				5	closely related to Arabidopsis BON3. copine. GO:0090332: stomatal closure.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os05g0373300  	LOC_Os05g30970.1				GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0060548 - negative regulation of cell death, GO:0005544 - calcium-dependent phospholipid binding	TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000346 - tiller number	PO:0020104 - leaf sheath , PO:0020033 - coleoptile , PO:0009009 - plant embryo , PO:0025034 - leaf 
22265	TDC3	OsTDC3	TRYPTOPHAN DECARBOXYLASE 3	Trp decarboxylase 3	TRYPTOPHAN DECARBOXYLASE 3		8	LOC_Os08g04560.	 Biochemical character,  Seed - Morphological traits - Endosperm	Os08g0140500	LOC_Os08g04560.1				GO:0006520 - cellular amino acid metabolic process, GO:0042427 - serotonin biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0016831 - carboxy-lyase activity	TO:0002673 - amino acid content, TO:0000487 - endosperm color	
22266	_	OsOSC12/OsPTS1, OsOSC12, OsPTS1, OSC12, PTS1	_	Oxidosqualene cyclase 12, poaceatapetol synthase 1			8	GO:0090547: response to low humidity. humidity-sensitive genic male sterility (HGMS).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os08g0223900 					GO:0010208 - pollen wall assembly, GO:0009270 - response to humidity, GO:0016866 - intramolecular transferase activity	TO:0000441 - humidity related trait, TO:0000437 - male sterility	PO:0009066 - anther 
22267	MMP1 	OsMMP1	MATRIX METALLOPROTEINASE 1	Matrix metalloproteinase 1	MATRIX METALLOPROTEINASE 1		2	KY575874 (indica). TO:0000993: cellulose content. GO:0099402: plant organ development.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0740700	LOC_Os02g50730.1				GO:0042545 - cell wall modification, GO:0004222 - metalloendopeptidase activity, GO:0005886 - plasma membrane, GO:0006979 - response to oxidative stress, GO:0008270 - zinc ion binding, GO:0031012 - extracellular matrix	TO:0002657 - oxidative stress, TO:0000357 - growth and development trait	
22268	BSR-K1 	OsBSR-K1, BSRK1	BROAD-SPECTRUM RESISTANCE KITAAKE-1 	broad-spectrum resistance Kitaake-1, broad-spectrum resistance Kitaake 1			10	a tetratricopeptide repeats (TPRs)-containing protein.	 Tolerance and resistance - Disease resistance	Os10g0548200 					GO:0016441 - posttranscriptional gene silencing, GO:0055087 - Ski complex, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
22269	MHZ3		MAOHUZI 3	maohuzi3		mhz3, mhz3-1, mhz3-2, mhz3-3, mhz3-4, mhz3-5	6	LOC_Os06g02480.		Os06g0115200	LOC_Os06g02480.1				GO:0009723 - response to ethylene stimulus, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0031397 - negative regulation of protein ubiquitination	TO:0000173 - ethylene sensitivity	
22270	DLK	OsDLK	DUAL LOCALISATION KINESIN 	Dual Localisation Kinesin, Dual Localization Kinesin	DUAL LOCALISATION KINESIN 		7	A3BFT0. class-XIV kinesis. GO:1901990: regulation of mitotic cell cycle phase transition.	 Tolerance and resistance - Stress tolerance	Os07g0105700	LOC_Os07g01490.2, LOC_Os07g01490.1				GO:0005874 - microtubule, GO:0008017 - microtubule binding, GO:0009409 - response to cold, GO:0003777 - microtubule motor activity, GO:0009524 - phragmoplast, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005819 - spindle, GO:0007018 - microtubule-based movement	TO:0000303 - cold tolerance	
22271	GGC2		_	G gamma subunit GGC2			8		 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os08g0456600						TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000567 - tiller angle	
22272	_	OsRuvBL1a, RuvBL1a, RUVBL1A	_	RuvB-like protein 1a, RuvB-like 1a			1	LOC_Os01g62040. rice homologue of RuvB gene. similar to RuvB1 from Chaetomium thermophilum. GO:0097255: R2TP complex.	 Tolerance and resistance - Stress tolerance	Os01g0837500	LOC_Os01g62040.3, LOC_Os01g62040.2, LOC_Os01g62040.1				GO:0005524 - ATP binding, GO:0000492 - box C/D snoRNP assembly, GO:0000812 - Swr1 complex, GO:0004003 - ATP-dependent DNA helicase activity, GO:0006338 - chromatin remodeling, GO:0006351 - transcription, DNA-dependent, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0016573 - histone acetylation, GO:0031011 - Ino80 complex, GO:0035267 - NuA4 histone acetyltransferase complex, GO:0043141 - ATP-dependent 5'-3' DNA helicase activity	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
22273	_	OsRuvBL1b, RuvBL1b, RUVBL1B	_	RuvB-like protein 1b, RuvB-like 1b			7	LOC_Os07g08170. rice homologue of RuvB gene. GO:0097255: R2TP complex.	 Other	Os07g0178900	LOC_Os07g08170.1				GO:0005524 - ATP binding, GO:0043141 - ATP-dependent 5'-3' DNA helicase activity, GO:0035267 - NuA4 histone acetyltransferase complex, GO:0031011 - Ino80 complex, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
22274	_	OsRuvBL2a, RuvBL2a, RUVBL2A	_	RuvB-like protein 2a, RuvB-like 2a				rice homologue of RuvB gene.									
22275	DHS		DROUGHT HYPERSENSITIVE			dhs	2	LOC_Os02g45780. a RING (Really Interesting New Gene)-type protein. GO:0061630: ubiquitin protein ligase activity. GO:1904277: negative regulation of wax biosynthetic process.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0682300	LOC_Os02g45780.1				GO:0009414 - response to water deprivation, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0010025 - wax biosynthetic process	TO:0000276 - drought tolerance	
22277	BDG	Os-BDG, OsBDG	BODYGUARD				6	LOC_Os06g04169. a homolog of Arabidopsis BDG.		Os06g0132500	LOC_Os06g04169.2, LOC_Os06g04169.1						
22278	_	OsPGL1, PGL1	_	Polygalacturonases-Like 1, PG-like 1			6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0545400	LOC_Os06g35320.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22279	_	OsPGL2, PGL2	_	Polygalacturonases-Like 2, PG-like 2			6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0611500	LOC_Os06g40890.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22280	_	OsPGL3, PGL3	_	Polygalacturonases-Like 3, PG-like 3			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0517500	LOC_Os01g33300.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22281	_	OsPGL4, PGL4	_	Polygalacturonases-Like 4, PG-like 4			8	GO:0071555: cell wall organization.	 Biochemical character	Os08g0327200	LOC_Os08g23790.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22282	_	OsPGL5, PGL5	_	Polygalacturonases-Like 5, PG-like 5			6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0611400	LOC_Os06g40880.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region		
22283	_	OsPGL6, PGL6	_	Polygalacturonases-Like 6, PG-like 6			2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0196700	LOC_Os02g10300.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22284	_	OsPGL7, PGL7	_	Polygalacturonases-Like 7, PG-like 7			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0891100	LOC_Os01g66710.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22285	_	OsPGL8, PGL8	_	Polygalacturonases-Like 8, PG-like 8			6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0545800	LOC_Os06g35370.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22286	_	OsPGL9, PGL9	_	Polygalacturonases-Like 9, PG-like 9			5		 Biochemical character	Os05g0542800	LOC_Os05g46510.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22287	_	OsPGL10, PGL10	_	Polygalacturonases-Like 10, PG-like 10			6		 Biochemical character	Os06g0545200	LOC_Os06g35300.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22288	_	OsPGL11, PGL11	_	Polygalacturonases-Like 11, PG-like 11			3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0808000	LOC_Os03g59330.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22289	_	OsPGL12, PGL12	_	Polygalacturonases-Like 12, PG-like 12			11	GO:0071555: cell wall organization.	 Biochemical character	Os11g0249400	LOC_Os11g14400.1				GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
22290	_	OsPGL13, PGL13	_	Polygalacturonases-Like 13, PG-like 13			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0296200	LOC_Os01g19170.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22291	_	OsPGL14, PGL14	_	Polygalacturonases-Like 14, PG-like 14			5		 Biochemical character	Os05g0542900	LOC_Os05g46520.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22292	_	OsPGL15, PGL15	_	Polygalacturonases-Like 15, PG-like 15			2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0130200	LOC_Os02g03750.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region		
22293	_	OsPGL16, PGL16	_	Polygalacturonases-Like 16, PG-like 16			7	GO:0071555: cell wall organization.	 Biochemical character	Os07g0208100	LOC_Os07g10730.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22294	_	OsPGL17, PGL17	_	Polygalacturonases-Like 17, PG-like 17			5	GO:0071555: cell wall organization.	 Biochemical character	Os05g0279900	LOC_Os05g20020.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22295	_	OsPGL18, PGL18	_	Polygalacturonases-Like 18, PG-like 18			3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0216800	LOC_Os03g11760.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22296	_	OsPGL19, PGL19	_	Polygalacturonases-Like 19, PG-like 19			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0636500	LOC_Os01g44970.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region		
22297	_	OsPGL20, PGL20	_	Polygalacturonases-Like 20, PG-like 20			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0329300	LOC_Os01g22590.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22298	_	OsPGL21, PGL21	_	Polygalacturonases-Like 21, PG-like 21			5	GO:0071555: cell wall organization.	 Biochemical character	Os05g0578600	LOC_Os05g50260.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22299	_	OsPGL22, PGL22	_	Polygalacturonases-Like 22, PG-like 22			11		 Biochemical character	Os11g0249600	LOC_Os11g14410.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22300	_	OsPGL23, PGL23	_	Polygalacturonases-Like 23, PG-like 23			2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0256100	LOC_Os02g15690.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22301	_	OsPGL24, PGL24	_	Polygalacturonases-Like 24, PG-like 24			2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0781000	LOC_Os02g54030.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22302	_	OsPGL25, PGL25	_	Polygalacturonases-Like 25, PG-like 25			9	GO:0071555: cell wall organization.	 Biochemical character	Os09g0439400	LOC_Os09g26800.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22303	_	OsPGL26, PGL26	_	Polygalacturonases-Like 26, PG-like 26			5	GO:0071555: cell wall organization.	 Biochemical character	Os05g0587000	LOC_Os05g50960.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22304	_	OsPGL27, PGL27	_	Polygalacturonases-Like 27, PG-like 27			7	GO:0071555: cell wall organization.	 Biochemical character	Os07g0245200	LOC_Os07g14160.4, LOC_Os07g14160.3, LOC_Os07g14160.2, LOC_Os07g14160.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22305	_	OsPGL28, PGL28	_	Polygalacturonases-Like 28, PG-like 28			3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0833800	LOC_Os03g61800.3, LOC_Os03g61800.2, LOC_Os03g61800.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22306	_	OsPGL29, PGL29	_	Polygalacturonases-Like 29, PG-like 29			3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0124900	LOC_Os03g03350.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22307	_	OsPGL30, PGL30	_	Polygalacturonases-Like 30, PG-like 30			8	GO:0071555: cell wall organization.	 Biochemical character	Os08g0107300	LOC_Os08g01600.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22308	_	OsPGL31, PGL31	_	Polygalacturonases-Like 31, PG-like 31			1	GO:0071555: cell wall organization.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0618900	LOC_Os01g43160.1				GO:0009409 - response to cold, GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process	TO:0000303 - cold tolerance	
22309	_	OsPGL32, PGL32	_	Polygalacturonases-Like 32, PG-like 32			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0623600	LOC_Os01g43490.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22310	_	OsPGL33, PGL33	_	Polygalacturonases-Like 33, PG-like 33			12	GO:0071555: cell wall organization.	 Biochemical character	Os12g0554800	LOC_Os12g36810.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22311	_	OsPGL34, PGL34	_	Polygalacturonases-Like 34, PG-like 34			11	GO:0071555: cell wall organization.	 Biochemical character	Os11g0658800	LOC_Os11g43750.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22312	_	OsPGL35, PGL35	_	Polygalacturonases-Like 35, PG-like 35			9	GO:0071555: cell wall organization.	 Biochemical character	Os09g0487600	LOC_Os09g31270.1				GO:0004650 - polygalacturonase activity, GO:0005774 - vacuolar membrane, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22313	OCPI2	OsSRO1a, SRO1a	O. SATIVA CHYMOTRYPSIN PROTEASE INHIBITOR 2	O. sativa chymotrypsin protease inhibitor 2, chymotrypsin protease inhibitor 2, subtilisin-chymotrypsin protease inhibitor 2, similar to RCD one 1a	O. SATIVA CHYMOTRYPSIN PROTEASE INHIBITOR 2		1	LOC_Os01g42860. a rice homologue of SRO (similar to RCD one).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0615100 	LOC_Os01g42860.1				GO:0009409 - response to cold, GO:0008233 - peptidase activity, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0009611 - response to wounding, GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	
22314	_		_	dirigent			11	LOC_Os11g42500.		Os11g0644700	LOC_Os11g42500.1				GO:0048046 - apoplast		
22315	ACTPK1	OsACTPK1, ACTPK1-1, ACTPK1-2	ACT DOMAIN CONTAINING PROTEIN KINASE 1	ACT domain containing protein kinase 1	ACT DOMAIN CONTAINING PROTEIN KINASE 1	actpk1-1, actpk1-2	2	GO:0035556: intracellular signal transduction. the NCBI GEO database (accession number GSE66807). TO:0020096: mineral and ion transport trait.	 Vegetative organ - Root	Os02g0120100 	LOC_Os02g02780.1				GO:0004712 - protein serine/threonine/tyrosine kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0005829 - cytosol		PO:0009005 - root 
22316	ACTPK2	OsACTPK2	ACT DOMAIN CONTAINING PROTEIN KINASE 2	ACT domain containing protein kinase 2	ACT DOMAIN CONTAINING PROTEIN KINASE 2		7	GO:0035556: intracellular signal transduction.		Os07g0475900  	LOC_Os07g29330.5, LOC_Os07g29330.4, LOC_Os07g29330.3, LOC_Os07g29330.2, LOC_Os07g29330.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005829 - cytosol		
22317	ACTPK3	OsACTPK3	ACT DOMAIN CONTAINING PROTEIN KINASE 3	ACT domain containing protein kinase 3	ACT DOMAIN CONTAINING PROTEIN KINASE 3		9	GO:0035556: intracellular signal transduction.		Os09g0544300   	LOC_Os09g37230.2, LOC_Os09g37230.1				GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
22318	ACTPK5	OsACTPK5	ACT DOMAIN CONTAINING PROTEIN KINASE 5	ACT domain containing protein kinase 5	ACT DOMAIN CONTAINING PROTEIN KINASE 5		8	GO:0035556: intracellular signal transduction.		Os08g0103000   	LOC_Os08g01270.3, LOC_Os08g01270.2, LOC_Os08g01270.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005829 - cytosol		
22319	ACTPK6	OsACTPK6	ACT DOMAIN CONTAINING PROTEIN KINASE 6	ACT domain containing protein kinase 6	ACT DOMAIN CONTAINING PROTEIN KINASE 6		12			Os12g0163800    	LOC_Os12g06670.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
22322	ASD1	IWS1, OsIWS1	ALTERNATE SEMI-DWARF 1 	alternate semi-dwarf 1, Interact-With-Spt6 1			1	LOC_Os01g05420. C-terminus family protein. GO:2001253: regulation of histone H3-K36 trimethylation.	 Vegetative organ - Culm	Os01g0147200 	LOC_Os01g05420.1				GO:0005634 - nucleus, GO:0010793 - regulation of mRNA export from nucleus, GO:0032784 - regulation of RNA elongation, GO:0050684 - regulation of mRNA processing	TO:0000051 - stem strength, TO:0000207 - plant height, TO:0000145 - internode length	PO:0009047 - stem 
22323	TL		TWISTED LEAF				12	TL is an antisense long noncoding RNA (lncRNA) transcribed from the opposite strand of the R2R3 MYB transcription factor gene locus, OsMYB60. TO:0000748: leaf morphology trait.	 Vegetative organ - Leaf,  Other	Os12g0124900					GO:0009965 - leaf morphogenesis, GO:0048366 - leaf development, GO:0006355 - regulation of transcription, DNA-dependent		PO:0001050 - leaf development stage 
22324	ZFP7 	OsZFP7	ZINC FINGER PROTEIN 7	zinc finger protein 7	ZINC FINGER PROTEIN 7		7	a C2H2 transcription factor. Os07g0593000 is the closest homolog to GmZFP7 in soybean (Glycine max) and AtZFP7 (At1g24625) in A. thaliana. TO:0000748: leaf morphology trait.	 Vegetative organ - Leaf,  Other	Os07g0593000	LOC_Os07g40300.1				GO:0009965 - leaf morphogenesis, GO:0048366 - leaf development, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		PO:0001050 - leaf development stage 
22325	_	SSP	_	S1 locus-specific peptidase domain-containing protein		SSP-gla	6	"We found that the causal mutation of the S1mut allele was a deletion in the peptidase-coding gene (denoted \"SSP\") in the S1 locus of O. glaberrima. No orthologous genes of SSP were found in the O. sativa genome (Koide et al. 2018)."	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000042 - f1-hybrid incompatibility	
22326	_	OsTP1, TP1	_	trypsin-like peptidase 1		ogtpr1-1, ogtpr1-2, ogtpr1-3, ogtpr1-4	6	allelic counterpart of OgTPR1. OgTPR1 (trypsin-like peptidase/ribosome biogenesis regulatory domain protein 1) in Oryza glaberrima. KY462781 (OsTP1), KY457222 (OgTPR1). OgTPR1 (trypsin-like peptidase and RRS domains)  has a positive role in the S1-mediated interspecific hybrid sterility; loss of mutation of this gene can rescue male and female fertility in hybrids (Xie et al. 2017).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os06g0142000 	LOC_Os06g04970.1				GO:0008233 - peptidase activity	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility, TO:0000437 - male sterility	
22327	BPH34	Bph34	BROWN PLANTHOPPER RESISTANCE 34	BPH resistance 34			4	Bph34 was identified in Oryza nivara acc. IRGC104646 on long arm of chromosome 4. The Bph34 locus is 91 Kb in size on Nipponbare reference genome-IRGSP-1.0 and contains 11 candidate genes. Two SSR markers, RM16994 and RM17007, co-segregated with the Bph34. Bph34 is non-allelic to Bph6 and Bph27(t) which are found in this QTL region. (Kumar et al. 2018)	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
22328	SPL	OsSPL	SPOROCYTELESS			Osspl, Osspl-1, Osspl-2, Osspl-3, Osspl-4	5	LOC_Os05g42240. GO:0110044: regulation of cell cycle switching, mitotic to meiotic cell cycle.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os05g0501800 	LOC_Os05g42240.1				GO:0052545 - callose localization, GO:0051728 - cell cycle switching, mitotic to meiotic cell cycle, GO:0006325 - chromatin organization, GO:0009554 - megasporogenesis	TO:0000485 - sterility related trait	
22329	_	OsSPEAR1, SPEAR1	_	"\"SPL-like, EAR-containing protein 1\""			1			Os01g0231100	LOC_Os01g13040.1						
22330	_	OsSPEAR2, SPEAR2	_	"\"SPL-like, EAR-containing protein 2\""			1			Os01g0212500	LOC_Os01g11430.1						
22331	_	OsSPEAR3, SPEAR3	_	"\"SPL-like, EAR-containing protein 3\""			1			Os01g0676900	LOC_Os01g48530.1						
22332	_	OsSPEAR4, SPEAR4	_	"\"SPL-like, EAR-containing protein 4\""			3	LOC_Os03g26070.		Os03g0377900	LOC_Os03g26070.1						
22333	_	OsSPEAR6, SPEAR6	_	"\"SPL-like, EAR-containing protein 6\""			5			Os05g0559316	LOC_Os05g48570.1						
22335	_	OsBetvI, BetvI	_	pathogenesis-related BetvI family protein			8	LOC_Os08g28670.1 	 Tolerance and resistance	Os08g0374000	LOC_Os08g28670.1				GO:0006952 - defense response, GO:0009607 - response to biotic stimulus		
22336	PHS1	OsPHS1	POOR HOMOLOGOUS SYNAPSIS 1	Poor homologous synapsis 1			6			Os06g0473000 	LOC_Os06g27860.1						
22337	PSL15	OsPSL15	PREMATURE SENESCENCE LEAF 15	premature senescence leaf 15		psl15		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl15 is non-allelic to psl50, psl117 and psl270. The allelism between psl15 and psl89 could not be determined because their F1 plants were not viable.	 Vegetative organ - Leaf,  Coloration - Chlorophyll						GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence, GO:0008219 - cell death	TO:0000605 - hydrogen peroxide content, TO:0000295 - chlorophyll-b content, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence, TO:0000326 - leaf color, TO:0000496 - carotenoid content	PO:0001054 - 4 leaf senescence stage 
22338	PSL50	OsPSL50	PREMATURE SENESCENCE LEAF 50	premature senescence leaf 50		psl50		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl50 is non-allelic to psl15, psl89 and psl270. The allelism between psl50 and psl117 could not be determined because their F1 plants were not viable.	 Vegetative organ - Leaf,  Coloration - Chlorophyll						GO:0009658 - chloroplast organization, GO:0008219 - cell death, GO:0010150 - leaf senescence	TO:0000326 - leaf color, TO:0000249 - leaf senescence, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000605 - hydrogen peroxide content, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content	PO:0001054 - 4 leaf senescence stage 
22339	PSL89	OsPSL89	PREMATURE SENESCENCE LEAF 89	premature senescence leaf 89		psl89		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl89 is non-allelic to psl50, psl117 and psl270. The allelism between psl15 and psl89 could not be determined because their F1 plants were not viable.	 Vegetative organ - Leaf,  Coloration - Chlorophyll						GO:0010150 - leaf senescence, GO:0008219 - cell death, GO:0009658 - chloroplast organization	TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000605 - hydrogen peroxide content, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
22340	PSL117	OsPSL117	PREMATURE SENESCENCE LEAF 117	premature senescence leaf 117		psl117		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl117 is non-allelic to psl15, psl89 and psl270. The allelism between psl50 and psl117 could not be determined because their F1 plants were not viable.	 Vegetative organ - Leaf,  Coloration - Chlorophyll						GO:0008219 - cell death, GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization	TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0000249 - leaf senescence, TO:0000295 - chlorophyll-b content, TO:0000605 - hydrogen peroxide content, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content	PO:0001054 - 4 leaf senescence stage 
22341	PSL270	OsPSL270	PREMATURE SENESCENCE LEAF 270	premature senescence leaf 270		psl270		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl270 is non-allelic to the other four mutants. 	 Vegetative organ - Leaf,  Coloration - Chlorophyll						GO:0009646 - response to absence of light, GO:0008219 - cell death, GO:0009737 - response to abscisic acid stimulus, GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization	TO:0000249 - leaf senescence, TO:0000460 - light intensity sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000316 - photosynthetic ability, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content	PO:0001054 - 4 leaf senescence stage 
22342	GS7		GRAIN SHAPE 7	grain shape 7, GRAIN SHAPE ON CHROMOSOME 7		GS7-A, GS7-B	7		 Seed - Morphological traits,  Character as QTL - Yield and productivity							TO:0002730 - grain shape, TO:0000382 - 1000-seed weight, TO:0000734 - grain length	
22343	_	GDCi, OsGDCi	_	GLU DECARBOXYLASE ISOZYME1, GLU DECARBOXYLASE ISOZYME 1, glutamate decarboxylase 1			3	OsCaM1 target gene.	 Biochemical character	Os03g0720300	LOC_Os03g51080.1				GO:0004351 - glutamate decarboxylase activity, GO:0030170 - pyridoxal phosphate binding, GO:0006536 - glutamate metabolic process		
22344	CRO	OsCRO	CROTONASE	crotonase	CROTONASE		6	LOC_Os06g39344.	 Biochemical character	Os06g0594100	LOC_Os06g39344.3, LOC_Os06g39344.2, LOC_Os06g39344.1				GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity		
22345	_		_	gamma-thionin family domain-containing protein			2	LOC_Os02g07628.	 Biochemical character		LOC_Os02g07628						
22346	_	OsACK1, ACK1	_				1	Q9AWM8. Kinesin-7 family.		Os01g0513900	LOC_Os01g33040.1				GO:0016887 - ATPase activity, GO:0005874 - microtubule, GO:0009524 - phragmoplast, GO:0005871 - kinesin complex, GO:0009555 - pollen development, GO:0007018 - microtubule-based movement, GO:0000911 - cytokinesis by cell plate formation, GO:0009558 - cellularization of the embryo sac, GO:0003777 - microtubule motor activity, GO:0008017 - microtubule binding, GO:0005524 - ATP binding		
22347	_	OsKCBP, KCBP	_	kinesin-like calmodulin-binding protein			4	Q7XPJ0. Kinesin-14 family. OsCaM1 target gene.		Os04g0666900	LOC_Os04g57140.1, LOC_Os04g57140.2				GO:0005737 - cytoplasm, GO:0016491 - oxidoreductase activity, GO:0003777 - microtubule motor activity, GO:0005524 - ATP binding, GO:0005871 - kinesin complex, GO:0005874 - microtubule, GO:0007018 - microtubule-based movement, GO:0008017 - microtubule binding, GO:0016887 - ATPase activity, GO:0005516 - calmodulin binding		
22348	PAY1		PLANT ARCHITECTURE AND YIELD 1				8	LOC_Os08g31470. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os08g0407200	LOC_Os08g31470.4, LOC_Os08g31470.3, LOC_Os08g31470.2, LOC_Os08g31470.1				GO:0009926 - auxin polar transport, GO:0010229 - inflorescence development	TO:0000152 - panicle number, TO:0000621 - inflorescence development trait, TO:0000472 - vascular bundle number, TO:0000576 - stem length, TO:0000145 - internode length, TO:0000339 - stem thickness, TO:0006032 - panicle size, TO:0000567 - tiller angle, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0002672 - auxin content, TO:0000449 - grain yield per plant, TO:0000447 - filled grain number, TO:0000396 - grain yield	PO:0020148 - shoot apical meristem , PO:0000017 - vascular leaf primordium , PO:0009051 - spikelet , PO:0001083 - inflorescence development stage 
22349	_	MRG701, OsMRG701	_	MORF-RELATED GENE701, MORF-RELATED GENE 701			4	LOC_Os04g01130.	 Other	Os04g0101300	LOC_Os04g01130.1				GO:0006325 - chromatin organization, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016021 - integral to membrane, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
22350	_	MRG702, OsMRG702	_	MORF-RELATED GENE702, MORF-RELATED GENE 702			11	LOC_Os11g34300.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Morphological traits,  Reproductive organ - Panicle, Mode of branching,  Other	Os11g0545600	LOC_Os11g34305.1, LOC_Os11g34300.3, LOC_Os11g34300.2, LOC_Os11g34300.1				GO:0006325 - chromatin organization, GO:0005634 - nucleus, GO:0009742 - brassinosteroid mediated signaling, GO:0016573 - histone acetylation, GO:0009741 - response to brassinosteroid stimulus, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:2000028 - regulation of photoperiodism, flowering, GO:0016021 - integral to membrane, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent	TO:0002688 - leaf lamina joint bending, TO:0000040 - panicle length, TO:0002757 - flag leaf length, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000397 - grain size, TO:0000456 - spikelet number, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000590 - grain weight	
22351	_	RAV6	_	RELATED TO ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1 (VP1) 6, RAV family gene 6		Epi-rav6	2	LOC_Os02g45850. Q6EU30. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Seed - Morphological traits,  Other	Os02g0683500	LOC_Os02g45850.1				GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009742 - brassinosteroid mediated signaling, GO:0010268 - brassinosteroid homeostasis	TO:0000304 - seed thickness, TO:0000149 - seed width, TO:0000146 - seed length, TO:0000592 - 1000-dehulled grain weight, TO:0000391 - seed size, TO:0000206 - leaf angle	
22352	_		_				3	LOC_Os03g02900. Q8LMR9. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os03g0120900	LOC_Os03g02900.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
22353	_		_				10	LOC_Os10g39190. Q8LNN8. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os10g0537100	LOC_Os10g39190.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
22354	_		_				10	LOC_Os10g39190. Q8LNN8. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os10g0537100	LOC_Os10g39190.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
22355	_		_				8	LOC_Os08g06120. Q7EZD5. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os08g0157700	LOC_Os08g06120.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
22356	_		_				11	LOC_Os11g05740. Q53QI0. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os11g0156000	LOC_Os11g05740.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
22357	_		_				2	LOC_Os02g25830. Q6K3B1. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os02g0455900	LOC_Os02g25830.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
22358	DCA1	OsDCA1	DST CO-ACTIVATOR 1	DST Co-activator 1		dca1	10	LOC_Os10g31850. a CHY zinc finger protein. GO:1901001: negative regulation of response to salt stress. GO:0080148: negative regulation of response to water deprivation. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Stress tolerance,  Other	Os10g0456800	LOC_Os10g31850.5, LOC_Os10g31850.2, LOC_Os10g31850.1				GO:0003713 - transcription coactivator activity, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance	
22359	_	prx24	_	peroxidase 24				GO:0090333: regulation of stomatal closure.	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance	PO:0000293 - guard cell 
22360	REL1	OsREL1	ROLLED AND ERECT LEAF 1	rolled and erect leaf 1, rolled and erect 1		rel1, rel1-D	1	TO:0006064: rolled leaf. TO:0000748: leaf morphology trait. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0863500					GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling	TO:0000207 - plant height, TO:0000590 - grain weight, TO:0002730 - grain shape, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000396 - grain yield, TO:0000206 - leaf angle, TO:0000085 - leaf rolling	PO:0009013 - portion of meristem tissue 
22361	REL2		ROLLED AND ERECT LEAF 2	rolled and erect leaf 2		rel2	10	TO:0006064: rolled leaf.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os10g0562700	LOC_Os10g41310.1				GO:0009965 - leaf morphogenesis, GO:0005886 - plasma membrane	TO:0001018 - transpiration rate, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content, TO:0000346 - tiller number, TO:0002730 - grain shape, TO:0000447 - filled grain number, TO:0001027 - net photosynthetic rate, TO:0000293 - chlorophyll-a content, TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending	PO:0025034 - leaf 
22362	ACL1	OsACL1, ACL2, OsACL2	ABAXIALLY CURLED LEAF 1	abaxially curled leaf 1			4	LOC_Os04g33860. ACL1 and ACL2 in Yang et al. 2016. GO:2000011: regulation of adaxial/abaxial pattern formation.	 Vegetative organ - Leaf	Os04g0415000	LOC_Os04g33860.1				GO:0048366 - leaf development	TO:0000085 - leaf rolling, TO:0000207 - plant height	PO:0001050 - leaf development stage , PO:0025034 - leaf , PO:0020104 - leaf sheath 
22363	DOF12OS	OsDof12os, Dof12os	DOF12 OPPOSITE STRAND	antisense OsDof12 transcripts, opposite strand of OsDof12, OsDof12 opposite strand			3		 Tolerance and resistance - Stress tolerance	Os03g0169700					GO:0009646 - response to absence of light, GO:0009414 - response to water deprivation	TO:0000460 - light intensity sensitivity, TO:0000276 - drought tolerance	
22364	CHX2	OsCHX02, CHX02, OsCHX2	CATION/H+ EXCHANGER  2	cation/H+ exchanger  2	CATION/H+ EXCHANGER  2		8		 Biochemical character	Os08g0550600	LOC_Os08g43690.1				GO:0016021 - integral to membrane, GO:0015299 - solute:hydrogen antiporter activity		
22365	CHX5	OsCHX05, CHX05, OsCHX5	CATION/H+ EXCHANGER  5	cation/H+ exchanger  5	CATION/H+ EXCHANGER  5		5		 Biochemical character	Os05g0473401	LOC_Os05g39600.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0015672 - monovalent inorganic cation transport, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system		PO:0009046 - flower 
22366	CHX6	OsCHX06, CHX06, OsCHX6	CATION/H+ EXCHANGER  6	cation/H+ exchanger  6	CATION/H+ EXCHANGER  6		12	LOC_Os12g01820.	 Biochemical character	Os12g0109150/Os12g0109150							PO:0009046 - flower 
22367	CHX7	OsCHX07, CHX07, OsCHX7	CATION/H+ EXCHANGER  7	cation/H+ exchanger  7	CATION/H+ EXCHANGER  7		11		 Biochemical character	Os11g0109400	LOC_Os11g01820.1				GO:0015672 - monovalent inorganic cation transport, GO:0016021 - integral to membrane, GO:0006885 - regulation of pH, GO:0012505 - endomembrane system, GO:0015299 - solute:hydrogen antiporter activity		
22368	CHX8	OsCHX08, CHX08, OsCHX8	CATION/H+ EXCHANGER  8	cation/H+ exchanger  8	CATION/H+ EXCHANGER  8		8		 Biochemical character	Os08g0117800	LOC_Os08g02450.1				GO:0016021 - integral to membrane, GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system, GO:0006885 - regulation of pH, GO:0015672 - monovalent inorganic cation transport		PO:0009046 - flower 
22369	CHX9	OsCHX09, CHX09, OsCHX9	CATION/H+ EXCHANGER  9	cation/H+ exchanger  9	CATION/H+ EXCHANGER  9		12		 Biochemical character	Os12g0121600	LOC_Os12g02840.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0015672 - monovalent inorganic cation transport, GO:0006885 - regulation of pH, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system		PO:0009046 - flower 
22370	CHX10	OsCHX10	CATION/H+ EXCHANGER  10	cation/H+ exchanger  10	CATION/H+ EXCHANGER  10		11		 Biochemical character	Os11g0123600	LOC_Os11g03070.1				GO:0015672 - monovalent inorganic cation transport, GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system, GO:0006885 - regulation of pH, GO:0016021 - integral to membrane		
22371	CHX12	OsCHX12	CATION/H+ EXCHANGER  12	cation/H+ exchanger  12	CATION/H+ EXCHANGER  12		5		 Biochemical character	Os05g0113300	LOC_Os05g02240.1				GO:0015672 - monovalent inorganic cation transport, GO:0030007 - cellular potassium ion homeostasis, GO:0030104 - water homeostasis, GO:0005783 - endoplasmic reticulum, GO:0006623 - protein targeting to vacuole, GO:0006885 - regulation of pH, GO:0012505 - endomembrane system, GO:0015299 - solute:hydrogen antiporter activity, GO:0016021 - integral to membrane		PO:0005052 - plant callus 
22372	CHX13	OsCHX13	CATION/H+ EXCHANGER  13	cation/H+ exchanger  13	CATION/H+ EXCHANGER  13		3		 Biochemical character	Os03g0828600	LOC_Os03g61290.1				GO:0006885 - regulation of pH, GO:0016021 - integral to membrane, GO:0015672 - monovalent inorganic cation transport, GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system		
22373	CHX14	OsCHX14	CATION/H+ EXCHANGER  14	cation/H+ exchanger  14	CATION/H+ EXCHANGER  14		5	LOC_Os05g19500.	 Biochemical character	Os05g0276100	LOC_Os05g19500.2, LOC_Os05g19500.1				GO:0006885 - regulation of pH, GO:0006813 - potassium ion transport, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0015672 - monovalent inorganic cation transport, GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system, GO:0055075 - potassium ion homeostasis, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum		PO:0009046 - flower , PO:0009073 - stigma , PO:0025281 - pollen , PO:0009066 - anther , PO:0000034 - vascular system , PO:0009072 - plant ovary , PO:0009036 - lodicule 
22374	CHX16	OsCHX16	CATION/H+ EXCHANGER  16	cation/H+ exchanger  16	CATION/H+ EXCHANGER  16		5		 Biochemical character	Os05g0485000	LOC_Os05g40650.1				GO:0006885 - regulation of pH, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system, GO:0015672 - monovalent inorganic cation transport, GO:0015299 - solute:hydrogen antiporter activity		PO:0005052 - plant callus 
22375	CHX17	OsCHX17	CATION/H+ EXCHANGER  17	cation/H+ exchanger  17	CATION/H+ EXCHANGER  17		1		 Biochemical character	Os01g0817400	LOC_Os01g60140.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0015672 - monovalent inorganic cation transport, GO:0006885 - regulation of pH, GO:0012505 - endomembrane system, GO:0016021 - integral to membrane		
22376	THIS1		HIGH TILLERING, REDUCED HEIGHT, AND INFERTILE SPIKELETS 1	"\"high-tillering, reduced height with infertile spikelet 1\", \"high tillering, reduced height, and infertile spikelets 1\""		this1	1	TO:0020106: Indole-3-acetic acid content. GO:2000032: regulation of secondary shoot formation. GO:0061458: reproductive system development.	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility	Os01g0751600	LOC_Os01g54810.1				GO:0016787 - hydrolase activity, GO:0010152 - pollen maturation, GO:0009901 - anther dehiscence, GO:0001558 - regulation of cell growth, GO:0009734 - auxin mediated signaling pathway, GO:0010223 - secondary shoot formation, GO:0009733 - response to auxin stimulus, GO:0005737 - cytoplasm, GO:0051302 - regulation of cell division, GO:0006629 - lipid metabolic process	TO:0000180 - spikelet fertility, TO:0000421 - pollen fertility, TO:0000163 - auxin sensitivity, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000474 - glume opening	
22377	RPL1		RICE PLASTICITY 1	rice plasticity 1		rpl1	6	LOC_Os06g13640. GO:1905642: negative regulation of DNA methylation.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0245600	LOC_Os06g13640.2, LOC_Os06g13640.1				GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0009736 - cytokinin mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0035066 - positive regulation of histone acetylation	TO:0020020 - primary shoot branch number, TO:0000346 - tiller number, TO:0000145 - internode length, TO:0006032 - panicle size, TO:0002677 - brassinosteroid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000207 - plant height, TO:0000456 - spikelet number, TO:0020019 - secondary shoot branch number	PO:0005020 - vascular bundle , PO:0006036 - root epidermis , PO:0025178 - stem epidermis , PO:0006016 - leaf epidermis 
22378	LCD	OsLCD	LOW CADMIUM	Low cadmium, low Cd		lcd	1	TO:1000056: shoot system cadmium content. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os01g0956700	LOC_Os01g72670.4, LOC_Os01g72670.3, LOC_Os01g72670.2, LOC_Os01g72670.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0046686 - response to cadmium ion, GO:0015691 - cadmium ion transport		PO:0009005 - root , PO:0009015 - portion of vascular tissue , PO:0009006 - shoot system , PO:0000071 - companion cell , PO:0025034 - leaf 
22379	DEL1	OsPLL12, PLL12	DWARF AND EARLY-SENESCENCE LEAF 1	dwarf and early-senescence leaf1, Pectate lyase-like 12		del1	10	LOC_Os10g31910. a PECTATE LYASE-LIKE gene. strong similarity with plant PelC. GO:1902808: positive regulation of cell cycle G1/S phase transition. GO:1900057: positive regulation of leaf senescence. GO:0090391: geranium assembly. TO:0000993: cellulose content. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Seed - Morphological traits	Os10g0457200	LOC_Os10g31910.1				GO:0030570 - pectate lyase activity, GO:0045490 - pectin catabolic process, GO:0046872 - metal ion binding, GO:0043069 - negative regulation of programmed cell death, GO:0010150 - leaf senescence, GO:0048316 - seed development, GO:0009658 - chloroplast organization, GO:0048573 - photoperiodism, flowering, GO:0022402 - cell cycle process, GO:0010394 - homogalacturonan metabolic process	TO:0000207 - plant height, TO:0000249 - leaf senescence, TO:0000227 - root length, TO:0001013 - lateral root number, TO:0000145 - internode length, TO:0000132 - basal internode diameter, TO:0000346 - tiller number, TO:0000040 - panicle length, TO:0000653 - seed development trait, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000137 - days to heading, TO:0000326 - leaf color, TO:0000695 - leaf margin color, TO:0000495 - chlorophyll content, TO:0001015 - photosynthetic rate, TO:0000605 - hydrogen peroxide content, TO:0006006 - monosaccharide content	PO:0009005 - root , PO:0001054 - 4 leaf senescence stage , PO:0001170 - seed development stage , PO:0009047 - stem , PO:0000003 - whole plant 
22380	SLG		SLENDER GRAIN	slender grain		slg-D	8	LOC_Os08g44840. PO:0030123: panicle inflorescence.	 Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os08g0562500	LOC_Os08g44840.1				GO:0051179 - localization, GO:0010268 - brassinosteroid homeostasis, GO:0010229 - inflorescence development, GO:0010143 - cutin biosynthetic process, GO:0010090 - trichome morphogenesis, GO:0005737 - cytoplasm, GO:0001558 - regulation of cell growth, GO:0005634 - nucleus, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000621 - inflorescence development trait, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000206 - leaf angle, TO:0000590 - grain weight, TO:0002676 - brassinosteroid content	PO:0025127 - primordium , PO:0009037 - lemma , PO:0000034 - vascular system , PO:0020141 - stem node , PO:0009038 - palea , PO:0006327 - spikelet meristem , PO:0000229 - flower meristem , PO:0025477 - floral organ primordium , PO:0001083 - inflorescence development stage 
22381	LPL2		LESS PRONOUNCED LOBE EPIDERMAL CELL 2	less pronounced lobe epidermal cell2, PIROGI/Specifically Rac1-associated protein 1 (PIR/SRA1)-like protein		lpl2-1, lpl2-2, lpl2-3	3	LOC_Os03g05020. a homolog of the SCAR/WAVE complex components. GO:0090558: plant epidermis development. GO:0090626: plant epidermis morphogenesis.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - panicle	Os03g0143800	LOC_Os03g05020.1				GO:0045010 - actin nucleation, GO:0007015 - actin filament organization, GO:0045604 - regulation of epidermal cell differentiation	TO:0000040 - panicle length, TO:0000566 - stomatal frequency, TO:0000207 - plant height, TO:0000227 - root length	
22382	LPL3	OsLPL3	LESS PRONOUNCED LOBE EPIDERMAL CELL 3	less pronounced lobe epidermal cell3, NCK-associated protein 1 (NAP1)-like protein		lpl3-1	8	LOC_Os08g43130. Q6ZBH9. a homolog of the SCAR/WAVE complex components. GO:0090558: plant epidermis development. GO:0090626: plant epidermis morphogenesis.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility	Os08g0544500	LOC_Os08g43130.1				GO:0045604 - regulation of epidermal cell differentiation, GO:0045010 - actin nucleation, GO:0007015 - actin filament organization	TO:0000420 - fertility related trait, TO:0000207 - plant height	
22383	LC3	OsLC3	LEAF INCLINATION 3	LEAF INCLINATION3		lc3	6	LOC_Os06g39480. a SPOC domain-containing protein. TO: 0000829: leaf lamina morphology trait.	 Vegetative organ - Leaf	Os06g0595900	LOC_Os06g39480.1				GO:0051510 - regulation of unidimensional cell growth, GO:0010252 - auxin homeostasis, GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0006351 - transcription, DNA-dependent	TO:0000163 - auxin sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000206 - leaf angle	PO:0025281 - pollen , PO:0009039 - glume , PO:0009010 - seed , PO:0009051 - spikelet 
22384	HTH1	OsHTH1	HOTHEAD 1	HOTHEAD1			4	a homolog of Arabidopsis ACE/HTH. PO:0030123: panicle inflorescence. TO:1000022: anther morphology trait.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0573100	LOC_Os04g48400.1				GO:0009555 - pollen development, GO:0048653 - anther development, GO:0010143 - cutin biosynthetic process, GO:0050660 - FAD binding, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors	TO:0000421 - pollen fertility, TO:0000604 - fat and essential oil content, TO:0000053 - pollen sterility, TO:0000214 - anther shape, TO:0000180 - spikelet fertility	PO:0001007 - pollen development stage , PO:0004013 - epidermal cell , PO:0025545 - anther wall tapetum cell , PO:0009066 - anther , PO:0001004 - anther development stage 
22385	_		_	HTH1-related protein			3		 Biochemical character	Os03g0118700	LOC_Os03g02700.1				GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0050660 - FAD binding, GO:0016829 - lyase activity		
22386	_		_	HTH1-related protein			2		 Biochemical character	Os02g0678300	LOC_Os02g45530.1				GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0050660 - FAD binding		
22387	_		_	HTH1-related protein			6		 Biochemical character	Os06g0656000	LOC_Os06g44540.1				GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0050660 - FAD binding, GO:0016829 - lyase activity		
22388	AN3-1	An3-1	AWN3-1	Awn3-1, Awn 3-1			3	Awn3-1 high expression prevent or inhibit awn development (Li et al. 2016).	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0418600	LOC_Os03g30519.2, LOC_Os03g30519.1					TO:0002734 - awn presence, TO:0000072 - awn length	
22389	TRXM1	OsTRXM1	THIOREDOXIN M-TYPE 1	thioredoxin M1	THIOREDOXIN M-TYPE 1		2	Q6H7E4. a chloroplast m type thioredoxin.	 Biochemical character	Os02g0639900	LOC_Os02g42700.1				GO:0005737 - cytoplasm, GO:0047134 - protein-disulfide reductase activity, GO:0045454 - cell redox homeostasis, GO:0034599 - cellular response to oxidative stress, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009507 - chloroplast, GO:0006662 - glycerol ether metabolic process, GO:0004791 - thioredoxin-disulfide reductase activity		
22390	_	OsTDL1B, TDL1B	_	TPD1-like 1B			10	Q8S6P9. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os10g0207500	LOC_Os10g14020.2, LOC_Os10g14020.1						PO:0009066 - anther , PO:0009051 - spikelet , PO:0009005 - root 
22391	RPL21	OsRPL21, Rpl21, OsRpl21	RIBOSOMAL PROTEIN L21	ribosomal protein L21, ribosomal protein large subunit 21	RIBOSOMAL PROTEIN L21		2		 Other	Os02g0259600	LOC_Os02g15900.1				GO:0009793 - embryonic development ending in seed dormancy, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009409 - response to cold, GO:0003723 - RNA binding, GO:0009658 - chloroplast organization, GO:0005840 - ribosome, GO:0005634 - nucleus, GO:0009570 - chloroplast stroma, GO:0009941 - chloroplast envelope, GO:0010027 - thylakoid membrane organization		
22393	PGL1	OsPGL1	PALE GREEN LEAVES 1	Pale Green Leaves 1		Ospgl1, Ospgl1-1, Ospgl1-2	12	LOC_Os12g06650. dual-localized PPR (pentatricopeptide repeat) protein. DYW motif-containing protein. GO:1900865: chloroplast RNA modification. GO:1900864: mitochondrial RNA modification.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os12g0163600	LOC_Os12g06650.1				GO:0009451 - RNA modification, GO:0009658 - chloroplast organization, GO:0008270 - zinc ion binding	TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait	
22394	MORF1	OsMORF1	MULTIPLE ORGANELLAR RNA EDITING FACTOR 1	multiple organellar RNA editing factor 1	MULTIPLE ORGANELLAR RNA EDITING FACTOR 1		11	LOC_Os11g11020. GO:0080156: mitochondrial mRNA modification.		Os11g0216400	LOC_Os11g11020.1				GO:0016554 - cytidine to uridine editing, GO:0005739 - mitochondrion		
22395	MORF2	OsMORF2	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2	multiple organellar RNA editing factor 2	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2		6	LOC_Os06g02600. GO:0080156: mitochondrial mRNA modification.		Os06g0116600	LOC_Os06g02600.1				GO:0016554 - cytidine to uridine editing, GO:0005739 - mitochondrion		
22396	MORF8	OsMORF8	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8	multiple organellar RNA editing factor 8	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8		9	LOC_Os09g33480. GO:0080156: mitochondrial mRNA modification.		Os09g0509000	LOC_Os09g33480.1				GO:0016554 - cytidine to uridine editing, GO:0005739 - mitochondrion		
22397	MORF9	OsMORF9	MULTIPLE ORGANELLAR RNA EDITING FACTOR 9	multiple organellar RNA editing factor 9	MULTIPLE ORGANELLAR RNA EDITING FACTOR 9		8	LOC_Os08g04450. GO:1900865: chloroplast mRNA modification.		Os08g0139100	LOC_Os08g04450.3, LOC_Os08g04450.2, LOC_Os08g04450.1				GO:0009941 - chloroplast envelope, GO:0016554 - cytidine to uridine editing, GO:0042803 - protein homodimerization activity, GO:0009570 - chloroplast stroma, GO:0009507 - chloroplast		
22398	MORF3	OsMORF3	MULTIPLE ORGANELLAR RNA EDITING FACTOR 3	multiple organellar RNA editing factor 3	MULTIPLE ORGANELLAR RNA EDITING FACTOR 3		3	LOC_Os03g38490. GO:0080156: mitochondrial mRNA modification.		Os03g0581600	LOC_Os03g38490.1				GO:0046983 - protein dimerization activity, GO:0005739 - mitochondrion, GO:0016554 - cytidine to uridine editing, GO:0050897 - cobalt ion binding		
22399	_	MORF8-like	_	multiple organellar RNA editing factor 8-like			9	LOC_Os09g04670. GO:0080156: mitochondrial mRNA modification.		Os09g0132600	LOC_Os09g04670.1				GO:0005739 - mitochondrion, GO:0016554 - cytidine to uridine editing		
22400	_	OsPTR10, PTR10, OsNPF7.7, NPF7.7, OsNPF7.7-1, OsNPF7.7-2	_	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.7, PROTEIN TRANSPORTER 10		osnpf7.7	10	GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity. GO:0071705: nitrogen compound transport. TO:0020100: nitrate uptake. TO:0020094: nitrate content.	 Biochemical character	Os10g0579600	LOC_Os10g42870.2, LOC_Os10g42870.1				GO:0016021 - integral to membrane, GO:0015333 - peptide:hydrogen symporter activity, GO:0019740 - nitrogen utilization	TO:0002673 - amino acid content, TO:0000346 - tiller number, TO:0002639 - shoot branching, TO:0000357 - growth and development trait, TO:0000440 - grain number per plant, TO:0000447 - filled grain number, TO:0000396 - grain yield	
22401	GS9		GRAIN SHAPE GENE ON CHROMOSOME 9	Grain Shape Gene on Chromosome 9, Grain Shape 9		gs9	9	LOC_Os09g27590. MF621928. TO:0000975: grain width. TO:0000931: seed quality trait.	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances	Os09g0448500	LOC_Os09g27590.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0051302 - regulation of cell division, GO:0007140 - male meiosis, GO:0007143 - female meiosis	TO:0002730 - grain shape, TO:0000266 - chalky endosperm	
22402	ALBA2	OsAlba2, Alba2	ACETYLATION LOWERS BINDING AFFINITY 2	acetylation lowers binding affinity protein 2, acetylation lowers binding affinity 2, Alba family protein 2			2		 Tolerance and resistance - Stress tolerance	Os02g0202500 	LOC_Os02g10810.1				GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0003676 - nucleic acid binding, GO:0009409 - response to cold	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity	
22403	ALBA3	OsAlba3, Alba3	ACETYLATION LOWERS BINDING AFFINITY 3	acetylation lowers binding affinity protein 3, acetylation lowers binding affinity 3, Alba family protein 3			3		 Tolerance and resistance - Stress tolerance	Os03g0735300 	LOC_Os03g52490.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0003676 - nucleic acid binding, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	
22404	ALBA4	OsAlba4, Alba4	ACETYLATION LOWERS BINDING AFFINITY 4	acetylation lowers binding affinity protein 4, acetylation lowers binding affinity 4, Alba family protein 4			3	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os03g0166000 	LOC_Os03g06980.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0003676 - nucleic acid binding, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0020103 - flag leaf , PO:0009005 - root 
22405	ALBA5	OsAlba5, Alba5	ACETYLATION LOWERS BINDING AFFINITY 5	acetylation lowers binding affinity protein 5, acetylation lowers binding affinity 5, Alba family protein 5			4		 Tolerance and resistance - Stress tolerance	Os04g0428950 	LOC_Os04g34940.1				GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0003676 - nucleic acid binding, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
22406	ALBA6	OsAlba6, Alba6	ACETYLATION LOWERS BINDING AFFINITY 6	acetylation lowers binding affinity protein 6, acetylation lowers binding affinity 6, Alba family protein 6			6	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os06g0602600 	LOC_Os06g40040.2, LOC_Os06g40040.1				GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0003676 - nucleic acid binding	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0020103 - flag leaf 
22407	ALBA7	OsAlba7, Alba7	ACETYLATION LOWERS BINDING AFFINITY 7	acetylation lowers binding affinity protein 7, acetylation lowers binding affinity 7, Alba family protein 7			9		 Tolerance and resistance - Stress tolerance	Os09g0542000 	LOC_Os09g37006.2, LOC_Os09g37006.1				GO:0003676 - nucleic acid binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
22408	ALBA8	OsAlba8, Alba8	ACETYLATION LOWERS BINDING AFFINITY 8	acetylation lowers binding affinity protein 8, acetylation lowers binding affinity 8, Alba family protein 8			11	LOC_Os11g06760. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os11g0168300 	LOC_Os11g06760.2, LOC_Os11g06760.1				GO:0003676 - nucleic acid binding, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0020103 - flag leaf , PO:0009047 - stem 
22409	ALBA9	OsAlba9, Alba9	ACETYLATION LOWERS BINDING AFFINITY 9	acetylation lowers binding affinity protein 9, acetylation lowers binding affinity 9, Alba family protein 9			12		 Tolerance and resistance - Stress tolerance	Os12g0489300 	LOC_Os12g30550.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0003676 - nucleic acid binding, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0020103 - flag leaf , PO:0009047 - stem 
22410	RLI1	OsRLI1	REGULATOR OF LEAF INCLINATION1 	REGULATOR OF LEAF INCLINATION 1	REGULATOR OF LEAF INCLINATION1 	rli1, rli1-1, rli1-2	4	LOC_Os04g56990. SPX1-interacting protein.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0665600	LOC_Os04g56990.3, LOC_Os04g56990.2, LOC_Os04g56990.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0051510 - regulation of unidimensional cell growth	TO:0002688 - leaf lamina joint bending, TO:0000102 - phosphorus sensitivity, TO:0000206 - leaf angle	
22411	SIP1	OsSIP1	SDG723/OSTRX1 INTERACTION PROTEIN 1	SDG723/OsTrx1/OsSET33 Interaction Protein 1, SDG723/OsTrx1 Interaction Protein 1	SDG723/OSTRX1 INTERACTION PROTEIN 1	sip1, sip1-1, sip1-2, sip1-3	9	LOC_Os09g38790.	 Reproductive organ - Heading date,  Other	Os09g0560900	LOC_Os09g38790.3, LOC_Os09g38790.2, LOC_Os09g38790.1				GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0048576 - positive regulation of short-day photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	
22412	ML1	OsML1	MESOCOTYL LENGTH 1	mesocotyl length 1			3	LOC_Os03g53320. deep-sowing tolerance. tolerance to dry direct-seeding.	 Vegetative organ - Culm	Os03g0744900	LOC_Os03g53320.1					TO:0000544 - mesocotyl length	
22413	ML2	OsML2	MESOCOTYL LENGTH 2	mesocotyl length 2			7	LOC_Os07g24010. deep-sowing tolerance. tolerance to dry direct-seeding.	 Vegetative organ - Culm	Os07g0422280	LOC_Os07g24010					TO:0000544 - mesocotyl length	
22414	_	OsFDML2, FDML2	_	FACTOR OF DNA METHYLATION LIKE 2			1	LOC_Os01g03570.		Os01g0126600                     	LOC_Os01g03570.1				GO:0005634 - nucleus		PO:0009051 - spikelet , PO:0009072 - plant ovary , PO:0009073 - stigma 
22415	_	OsFDML1, FDML1	_	FACTOR OF DNA METHYLATION LIKE 1		osfdml1, osfdml1-1, osfdml1-2	2	LOC_Os02g19130. a rice homolog of the SUPPRESSOR OF GENE SILENCING3-like gene FACTOR OF DNA METHYLATION 1 (FDM1) from Arabidopsis. TO:1000024: palea morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0293300                     	LOC_Os02g19130.1				GO:0005634 - nucleus, GO:0009909 - regulation of flower development, GO:0031047 - gene silencing by RNA	TO:0006022 - floral organ development trait, TO:0006012 - carpel anatomy and morphology trait	PO:0009051 - spikelet , PO:0020003 - plant ovule , PO:0007615 - flower development stage , PO:0025477 - floral organ primordium , PO:0009072 - plant ovary , PO:0009073 - stigma 
22416	ERS1 	OsERS1	GLUTAMYL-TRNA SYNTHETASE 1	glutamyl-tRNA synthetase 1	GLUTAMYL-TRNA SYNTHETASE 1	osers1	10	LOC_Os10g22380. GO:2000254: regulation of male germ cell proliferation. TO:1000022: anther morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0369000	LOC_Os10g22380.2, LOC_Os10g22380.1				GO:0005524 - ATP binding, GO:0006424 - glutamyl-tRNA aminoacylation, GO:0006425 - glutaminyl-tRNA aminoacylation, GO:0004819 - glutamine-tRNA ligase activity, GO:0004818 - glutamate-tRNA ligase activity, GO:0048654 - anther morphogenesis, GO:0048653 - anther development, GO:0017102 - methionyl glutamyl tRNA synthetase complex, GO:0005739 - mitochondrion, GO:0005829 - cytosol	TO:0000214 - anther shape	PO:0001004 - anther development stage 
22417	ERS2	OsERS2	GLUTAMYL-TRNA SYNTHETASE 2	glutamyl-tRNA synthetase 2	GLUTAMYL-TRNA SYNTHETASE 2		1	LOC_Os01g16520.		Os01g0271200	LOC_Os01g16520.1				GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0017102 - methionyl glutamyl tRNA synthetase complex, GO:0005829 - cytosol, GO:0006424 - glutamyl-tRNA aminoacylation, GO:0006425 - glutaminyl-tRNA aminoacylation, GO:0004819 - glutamine-tRNA ligase activity, GO:0004818 - glutamate-tRNA ligase activity		
22418	ERS3	OsERS3	GLUTAMYL-TRNA SYNTHETASE 3	glutamyl-tRNA synthetase 3	GLUTAMYL-TRNA SYNTHETASE 3		2	LOC_Os02g02860.		Os02g0121000	LOC_Os02g02860.1				GO:0008270 - zinc ion binding, GO:0005524 - ATP binding, GO:0004818 - glutamate-tRNA ligase activity, GO:0006424 - glutamyl-tRNA aminoacylation, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0000049 - tRNA binding, GO:0048481 - ovule development		
22419	ARC	OsARC	_				1	LOC_Os01g60660. rice homolog of yeast Arc1p. 		Os01g0821800	LOC_Os01g60660.2, LOC_Os01g60660.1				GO:0000049 - tRNA binding, GO:0017101 - aminoacyl-tRNA synthetase multienzyme complex, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0017102 - methionyl glutamyl tRNA synthetase complex, GO:0006418 - tRNA aminoacylation for protein translation		
22420	_	H4	_	HISTONE4, Histone H4			9	LOC_Os09g38020.	 Other	Os09g0553100	LOC_Os09g38020.1				GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0006334 - nucleosome assembly, GO:0046982 - protein heterodimerization activity, GO:0003677 - DNA binding		
22421	UPS1	OsUPS1	UREIDE PERMEASE 1	ureide permease1	UREIDE PERMEASE 1		4	GO:1901698: response to nitrogen compound. GO:0071705: nitrogen compound transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0503000	LOC_Os12g31860.1, LOC_Os12g31860.2, LOC_Os12g31860.3, LOC_Os12g31860.4, LOC_Os12g31860.5, LOC_Os12g31860.6				GO:0019428 - allantoin biosynthetic process, GO:0060359 - response to ammonium ion, GO:0005886 - plasma membrane, GO:0042451 - purine nucleoside biosynthetic process, GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0015505 - uracil:cation symporter activity, GO:0005274 - allantoin uptake transmembrane transporter activity	TO:0000011 - nitrogen sensitivity	PO:0009015 - portion of vascular tissue 
22422	GINT1	OsGINT1	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 1	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 1		3	Q53WK1. a rice AtGINT1 homolog. Loss of OsGINT1 results in seedling lethality (Ishikawa et al. 2018).	 Biochemical character	Os05g0540000 	LOC_Os05g46260.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0006486 - protein amino acid glycosylation, GO:0030259 - lipid glycosylation, GO:0016021 - integral to membrane, GO:0040007 - growth		
22423	GMT1	OsGMT1	GIPC MANNOSYL-TRANSFERASE 1	GIPC MANNOSYL-TRANSFERASE1	GIPC MANNOSYL-TRANSFERASE 1		6		 Biochemical character	Os06g0705000 	LOC_Os06g49150.1				GO:0006486 - protein amino acid glycosylation, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane		
22424	_	OsMYB86L, MYB86L	_	MYB transcription factor 86L			8	LOC_Os08g36460.	 Other		LOC_Os08g36460						
22425	_	Get3	_	Get3 orthologue, Guided Entry of Tail-anchored protein 3 ortholog			9	GO:0071816: tail-anchored membrane protein insertion into ER membrane.		Os09g0521500	LOC_Os09g34970.1				GO:0005783 - endoplasmic reticulum, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0043621 - protein self-association, GO:0006620 - posttranslational protein targeting to membrane, GO:0048767 - root hair elongation, GO:0005829 - cytosol, GO:0043529 - GET complex, GO:0005737 - cytoplasm		
22426	_	Get3	_	Get3 orthologue, Guided Entry of Tail-anchored protein 3 ortholog			2			Os02g0711200	LOC_Os02g48130.1				GO:0009507 - chloroplast, GO:0010287 - plastoglobule		
22427	_	Get3	_	Get3 orthologue, Guided Entry of Tail-anchored protein 3 ortholog			2			Os02g0745000	LOC_Os02g51100.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0005739 - mitochondrion		
22428	_	Get1	_	Guided Entry of Tail-anchored protein 1, Get1 orthologue, Guided Entry of Tail-anchored protein 1 ortholog			6	GO:0071816: tail-anchored membrane protein insertion into ER membrane.		Os06g0198700	LOC_Os06g09840.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane, GO:0048767 - root hair elongation, GO:0043621 - protein self-association, GO:0003735 - structural constituent of ribosome		
22429	_	Get4	_	Guided Entry of Tail-anchored protein 4, Get4 orthologue, Guided Entry of Tail-anchored protein 4 ortholog			1	GO:0071818: BAT3 complex.		Os01g0164700	LOC_Os01g07100.1				GO:0045048 - protein insertion into ER membrane		
22430	WP3		WHITE PANICLE 3	WHITE PANICLE3		wp3	1	JN794567. PO:0030123: panicle inflorescence. GO:0090391: geranium assembly. TO:0020118: neoxanthin content. TO:0020119: violaxanthin content. 	 Vegetative organ - Leaf,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Coloration - Others	Os01g0306650	LOC_Os01g20100.1				GO:0007005 - mitochondrion organization, GO:0005739 - mitochondrion, GO:0010027 - thylakoid membrane organization, GO:0009658 - chloroplast organization	TO:0000326 - leaf color, TO:0000069 - variegated leaf, TO:0002715 - chloroplast development trait, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000289 - carotene content, TO:0002701 - lutein content, TO:0000201 - panicle color	PO:0009046 - flower , PO:0000025 - root tip 
22431	CYTC1-1	CytC1-1	CYTOCHROME C1-1	cytochrome c1-1	CYTOCHROME C1-1		5		 Biochemical character	Os05g0301700	LOC_Os05g23620.4, LOC_Os05g23620.3, LOC_Os05g23620.2, LOC_Os05g23620.1				GO:0042776 - mitochondrial ATP synthesis coupled proton transport, GO:0005750 - mitochondrial respiratory chain complex III, GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c, GO:0045153 - electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
22432	ZL16 	OsHAD1, HAD1	ZEBRA LEAF 16	zebra leaf 16, Beta-hydroxyacyl-ACP dehydrate 1	BETA-HYDROXYACYL-ACP DEHYDRATE 1	zl16, zl16-1, zl16-2	8	LOC_Os08g12840. TO:0006060: leaf chlorosis.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others	Os08g0225000	LOC_Os08g12840.1				GO:0009658 - chloroplast organization, GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0006633 - fatty acid biosynthetic process, GO:0016836 - hydro-lyase activity	TO:0000069 - variegated leaf, TO:0002715 - chloroplast development trait, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content	PO:0025034 - leaf 
22433	HAD2 	OsHAD2	BETA-HYDROXYACYL-ACP DEHYDRATE 2	Beta-hydroxyacyl-ACP dehydrate 2	BETA-HYDROXYACYL-ACP DEHYDRATE 2		5		 Biochemical character	Os05g0435700	LOC_Os05g36000.1				GO:0016836 - hydro-lyase activity, GO:0005737 - cytoplasm, GO:0006633 - fatty acid biosynthetic process		PO:0025034 - leaf 
22434	CTZFP8	OsCTZFP8	COLD TOLERANCE ZINC FINGER PROTEIN IN CHROMOSOME 8	cold tolerance zinc finger protein in chromosome 8	COLD TOLERANCE ZINC FINGER PROTEIN IN CHROMOSOME 8		8	LOC_Os08g20580.	 Tolerance and resistance - Stress tolerance	Os08g0300366	LOC_Os08g20580.1				GO:0003676 - nucleic acid binding, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000303 - cold tolerance	
22435	BZR2	OsBZR2	BRASSINAZOLE RESISTANT 2	BRASSINAZOLE-RESISTANT2			1	LOC_Os01g10610. Q0JPT4.		Os01g0203000	LOC_Os01g10610.1				GO:0040008 - regulation of growth, GO:0006351 - transcription, DNA-dependent, GO:0009742 - brassinosteroid mediated signaling, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
22436	BZR3	OsBZR3	BRASSINAZOLE RESISTANT 3	BRASSINAZOLE-RESISTANT3			6	LOC_Os06g35900. Q5Z9E5.		Os06g0552300	LOC_Os06g35900.1				GO:0040008 - regulation of growth, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009742 - brassinosteroid mediated signaling		
22437	BZR4	OsBZR4	BRASSINAZOLE RESISTANT 4	BRASSINAZOLE-RESISTANT4			2	LOC_Os02g13900. Q6EUF1.		Os02g0233200	LOC_Os02g13900.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0040008 - regulation of growth, GO:0009742 - brassinosteroid mediated signaling		
22438	_		_				1		 Tolerance and resistance - Stress tolerance	Os01g0617900	LOC_Os01g43070.2, LOC_Os01g43070.1				GO:0015979 - photosynthesis, GO:0019898 - extrinsic to membrane, GO:0009654 - oxygen evolving complex, GO:0005509 - calcium ion binding, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22439	SAP18	OsSAP18	_	co-repressor OsSAP18			2	LOC_Os02g02960. a rice homolog of Arabidopsis SAP.	 Other	Os02g0122000	LOC_Os02g02960.4, LOC_Os02g02960.3, LOC_Os02g02960.2, LOC_Os02g02960.1				GO:0006351 - transcription, DNA-dependent		
22440	SDS2	OsSDS2	SPL11 CELL-DEATH SUPPRESSOR 2	SPL11 cell-death suppressor 2	SPL11 CELL-DEATH SUPPRESSOR 2	sds2, sds2III	1	LOC_Os01g57480. S-domain family (SD-1a type) RLK.	 Tolerance and resistance - Disease resistance	Os01g0783800	LOC_Os01g57480.1				GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0031349 - positive regulation of defense response, GO:0043068 - positive regulation of programmed cell death, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease, TO:0000203 - bacterial leaf streak disease resistance, TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content	
22441	SDS1	OsSDS1	SPL11 CELL-DEATH SUPPRESSOR 1	SPL11 cell-death suppressor 1	SPL11 CELL-DEATH SUPPRESSOR 1	sds1			 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000605 - hydrogen peroxide content, TO:0000203 - bacterial leaf streak disease resistance, TO:0000074 - blast disease, TO:0000063 - mimic response	
22442	SDS3	OsSDS3	SPL11 CELL-DEATH SUPPRESSOR 3	SPL11 cell-death suppressor 3	SPL11 CELL-DEATH SUPPRESSOR 3	sds3			 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000203 - bacterial leaf streak disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000063 - mimic response	
22443	OXS3	OsOXS3	OXIDATIVE STRESS 3				2	rice homolog of Arabidopsis AtOXS3.	 Tolerance and resistance - Stress tolerance	Os02g0684400	LOC_Os02g45930.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22444	O3L1	OsO3L1	OXS3-LIKE 1	OXIDATIVE STRESS 3-like 1, OXS3-like 1			4	rice OXS3 homolog.		Os04g0583200	LOC_Os04g49370.1						
22445	O3L2	OsO3L2	OXS3-LIKE 2	OXIDATIVE STRESS 3-like 2, OXS3-like 2			6	rice OXS3 homolog. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os06g0559400	LOC_Os06g36390.2, LOC_Os06g36390.1				GO:0042393 - histone binding, GO:0005634 - nucleus, GO:0046686 - response to cadmium ion		PO:0000025 - root tip , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root 
22446	O3L3	OsO3L3	OXS3-LIKE 3	OXIDATIVE STRESS 3-like 3, OXS3-like 3			2	rice OXS3 homolog. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os02g0227100 	LOC_Os02g13370.1				GO:0005634 - nucleus, GO:0046686 - response to cadmium ion, GO:0042393 - histone binding		PO:0025034 - leaf , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0000025 - root tip 
22447	O3L4	OsO3L4	OXS3-LIKE 4	OXIDATIVE STRESS 3-like 4, OXS3-like 4			5	rice OXS3 homolog.		Os05g0524100 	LOC_Os05g44900.1						
22448	O3L5	OsO3L5	OXS3-LIKE 5	OXIDATIVE STRESS 3-like 5, OXS3-like 5			1	rice OXS3 homolog.		Os01g0739500 	LOC_Os01g53730.1						
22449	O3L6	OsO3L6	OXS3-LIKE 6	OXIDATIVE STRESS 3-like 6, OXS3-like 6			8	rice OXS3 homolog.		Os08g0458200 	LOC_Os08g35630.1						
22450	O3L7	OsO3L7	OXS3-LIKE 7	OXIDATIVE STRESS 3-like 7, OXS3-like 7			6	rice OXS3 homolog.		Os06g0698748 	LOC_Os06g48500.2, LOC_Os06g48500.1						
22451	TF1L	OsTF1L	TRANSCRIPTION FACTOR 1-LIKE		TRANSCRIPTION FACTOR 1-LIKE		8	LOC_Os08g19590. GO:1901141: regulation of lignin biosynthetic process. GO:0090333: regulation of stomatal closure. TO:0020095:  stomatal process related trait.	 Tolerance and resistance - Stress tolerance	Os08g0292000	LOC_Os08g19590.3, LOC_Os08g19590.2, LOC_Os08g19590.1				GO:0009809 - lignin biosynthetic process, GO:0009414 - response to water deprivation, GO:0010118 - stomatal movement, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0008289 - lipid binding, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000136 - relative water content, TO:0000276 - drought tolerance	
22452	DHHC4	OsDHHC4	DHHC DOMAIN PROTEIN 4	DHHC domain protein 4	DHHC DOMAIN PROTEIN 4		1		 Biochemical character	Os01g0925300	LOC_Os01g70100.1				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0016021 - integral to membrane, GO:0006612 - protein targeting to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus		
22453	CASPL5B1	OsCASPL5B1	CASP-LIKE PROTEIN 5B1	CASP-like protein 5B1, CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN-like protein 5B1	CASP-LIKE PROTEIN 5B1		1	Q5N794.		Os01g0847300	LOC_Os01g62850.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
22454	_		_				12	Nodulin protein		Os12g0637800	LOC_Os12g44070.1				GO:0016021 - integral to membrane		
22455	ACP	OsACP	ADENYLYL CYCLASE-ASSOCIATED PROTEIN	adenylyl cyclase-associated protein	ADENYLYL CYCLASE-ASSOCIATED PROTEIN		3	LOC_Os03g51250.1		Os03g0722600	LOC_Os03g51250.1				GO:0008179 - adenylate cyclase binding, GO:0003779 - actin binding, GO:0000902 - cell morphogenesis, GO:0045761 - regulation of adenylate cyclase activity, GO:0005634 - nucleus, GO:0030864 - cortical actin cytoskeleton, GO:0007163 - establishment or maintenance of cell polarity, GO:0008154 - actin polymerization or depolymerization		
22456	IPMS1	OsIPMS1	ISOPROPYLMALATE SYNTHASE 1	isopropylmalate synthase 1	ISOPROPYLMALATE SYNTHASE 1	osipms1, osipms1a, osipms1b, osipms1c	11	LOC_Os11g04670.1 GO:2000881: regulation of starch catabolic process.	 Biochemical character,  Seed - Physiological traits - Dormancy	Os11g0142500	LOC_Os11g04670.2, LOC_Os11g04670.1				GO:0010029 - regulation of seed germination, GO:0003852 - 2-isopropylmalate synthase activity, GO:0008652 - cellular amino acid biosynthetic process, GO:0043467 - regulation of generation of precursor metabolites and energy, GO:0009098 - leucine biosynthetic process, GO:0009507 - chloroplast, GO:0043201 - response to leucine, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0006099 - tricarboxylic acid cycle, GO:0005983 - starch catabolic process, GO:0006110 - regulation of glycolysis	TO:0006002 - proline content, TO:0002673 - amino acid content, TO:0000345 - seed viability, TO:0000340 - total soluble sugar content	PO:0007057 - 0 seed germination stage 
22457	IPMS2	OsIPMS2	ISOPROPYLMALATE SYNTHASE 2	isopropylmalate synthase 2	ISOPROPYLMALATE SYNTHASE 2		12	LOC_Os12g04440.1	 Biochemical character	Os12g0138900	LOC_Os12g04440.2, LOC_Os12g04440.1				GO:0009098 - leucine biosynthetic process, GO:0043201 - response to leucine, GO:0009507 - chloroplast, GO:0003852 - 2-isopropylmalate synthase activity		
22458	SMT1-2	OsSMT1-2	STEROL METHYLTRANSFERASE 1-2	sterol methyltransferase 1-2, sterol-C24-methyltransferase 1-2	STEROL METHYLTRANSFERASE 1-2		3		 Biochemical character	Os03g0807600 	LOC_Os03g59290.1				GO:0016126 - sterol biosynthetic process, GO:0008168 - methyltransferase activity		
22459	SMT1-3	OsSMT1-3	STEROL METHYLTRANSFERASE 1-3	sterol methyltransferase 1-3, sterol-C24-methyltransferase 1-3	STEROL METHYLTRANSFERASE 1-3		11	LOC_Os11g19140.	 Biochemical character	Os11g0296900 	LOC_Os11g19140.1				GO:0008168 - methyltransferase activity		
22460	LRK7	OsLRk7, LRk7	LECTIN-LIKE RECEPTOR KINASE 7	lectin-like receptor kinase 7	LECTIN-LIKE RECEPTOR KINASE 7		3			Os03g0772600	LOC_Os03g56160.1				GO:0004713 - protein tyrosine kinase activity, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0002229 - defense response to oomycetes, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0030246 - carbohydrate binding, GO:0005524 - ATP binding		
22461	TCF	OsTCF	TERNARY COMPLEX FACTOR	ternary complex factor	TERNARY COMPLEX FACTOR		8			Os08g0515700	LOC_Os08g40420.2, LOC_Os08g40420.1						
22462	ADSS	OsAdSS, AdSS, ASS2, OsASS2	ADENYLOSUCCINATE SYNTHETASE	adenylosuccinate synthetase, SAMP synthetase 2	ADENYLOSUCCINATE SYNTHETASE		3	Q10R17. GO:0044208: 'de novo' AMP biosynthetic process.	 Biochemical character	Os03g0174500	LOC_Os03g07840.1				GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0046040 - IMP metabolic process, GO:0000287 - magnesium ion binding, GO:0005525 - GTP binding, GO:0004019 - adenylosuccinate synthase activity		
22463	TCM1	OsTCM1	THERMOSENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 1	thermosensitive chlorophyll-deficient mutant 1		tcm1	1	LOC_Os01g56350. Q0JIZ1. a chloroplast-targeted TAC protein. GO:0090228: positive regulation of red or far-red light signaling pathway.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0769900	LOC_Os01g56350.3, LOC_Os01g56350.2, LOC_Os01g56350.1				GO:0009507 - chloroplast, GO:0009508 - plastid chromosome, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0042793 - transcription from plastid promoter, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009416 - response to light stimulus, GO:0005634 - nucleus	TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait	
22464	PEPR2	OsPEPR2	PEP RECEPTOR 2	Pep receptor 2	PEP RECEPTOR 2		8	a rice homolog of Arabidopsis PEPRs.		Os08g0446400	LOC_Os08g34650.2, LOC_Os08g34650.1				GO:0046777 - protein amino acid autophosphorylation, GO:0009506 - plasmodesma, GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity		
22465	PEP1	OsPep1, Pep1, OsPROPEP1, PROPEP1	PLANT ELICITOR PEPTIDE 1	plant elicitor peptide 1	PLANT ELICITOR PEPTIDE 1		4			Os04g0638700	LOC_Os04g54590.2, LOC_Os04g54590.1						
22466	PEP2	OsPep2, Pep2, OsPROPEP2, PROPEP2	PLANT ELICITOR PEPTIDE 2	plant elicitor peptide 2	PLANT ELICITOR PEPTIDE 2		8			Os08g0172800	LOC_Os08g07600.1						
22467	PEP3	OsPep3, Pep3, OsPROPEP3, PROPEP3	PLANT ELICITOR PEPTIDE 3	plant elicitor peptide 3	PLANT ELICITOR PEPTIDE 3		8	CI443705.	 Tolerance and resistance,  Tolerance and resistance - Insect resistance	Os08g0173300	LOC_Os08g07660.1				GO:0009625 - response to insect, GO:0009611 - response to wounding, GO:0080027 - response to herbivore, GO:0051501 - diterpene phytoalexin metabolic process	TO:0002671 - momilactone B content, TO:0000261 - insect damage resistance	
22468	PEP4	OsPep4, Pep4, OsPROPEP4, PROPEP4	PLANT ELICITOR PEPTIDE 4	plant elicitor peptide 4	PLANT ELICITOR PEPTIDE 4		8		 Tolerance and resistance,  Tolerance and resistance - Insect resistance	Os08g0173600	LOC_Os08g07690.1				GO:0080027 - response to herbivore, GO:0009625 - response to insect, GO:0009753 - response to jasmonic acid stimulus	TO:0000261 - insect damage resistance, TO:0000172 - jasmonic acid sensitivity	
22469	PEP5	OsPep5, Pep5, OsPROPEP5, PROPEP5	PLANT ELICITOR PEPTIDE 5	plant elicitor peptide 5	PLANT ELICITOR PEPTIDE 5		8	LOC_Os08g07640.1		Os08g0173200	LOC_Os08g07640.1						
22470	PEP6	OsPep6, Pep6, OsPROPEP6, PROPEP6	PLANT ELICITOR PEPTIDE 6	plant elicitor peptide 6	PLANT ELICITOR PEPTIDE 6		8			Os08g0173000	LOC_Os08g07630.1						
22471	CDS5	OsCDS5	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 5	Cytidinediphosphate-diacylglycerol synthase 5	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 5	cds5	1	Q5N9J9. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0832000	LOC_Os01g61560.3, LOC_Os01g61560.2, LOC_Os01g61560.1				GO:0009658 - chloroplast organization, GO:0010027 - thylakoid membrane organization, GO:0009414 - response to water deprivation, GO:0010148 - transpiration, GO:0055091 - phospholipid homeostasis, GO:0006970 - response to osmotic stress, GO:0016301 - kinase activity, GO:0010189 - vitamin E biosynthetic process	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000095 - osmotic response sensitivity, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000276 - drought tolerance	
22472	CDS1	OsCDS1	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 1	Cytidinediphosphate-diacylglycerol synthase 1	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 1												
22473	CDS2	OsCDS2	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 2	Cytidinediphosphate-diacylglycerol synthase 2	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 2												
22474	CDS3	OsCDS3	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 3	Cytidinediphosphate-diacylglycerol synthase 3	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 3												
22475	CDS4	OsCDS4	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 4	Cytidinediphosphate-diacylglycerol synthase 4	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 4												
22476	FSE1		FLOURY SHRUNKEN ENDOSPERM 1	floury shrunken endosperm1		fse1	8	LOC_Os08g01920. Phospholipase-Like Protein Homologous to PA-PLA1.	 Seed - Physiological traits - Storage substances	Os08g0110700	LOC_Os08g01920.1				GO:0006644 - phospholipid metabolic process, GO:0019252 - starch biosynthetic process, GO:0009960 - endosperm development, GO:0009506 - plasmodesma, GO:0009705 - plant-type vacuole membrane, GO:0009959 - negative gravitropism, GO:0009590 - detection of gravity, GO:0009660 - amyloplast organization, GO:0004620 - phospholipase activity, GO:0046872 - metal ion binding	TO:0000602 - total fat content, TO:0000104 - floury endosperm	PO:0007633 - endosperm development stage 
22477	_	XRCC2, OsXRCC2	_			xrcc2	1	GO:1904975: response to bleomycin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0870201 	LOC_Os01g64990.2, LOC_Os01g64990.1				GO:0045002 - double-strand break repair via single-strand annealing, GO:0006302 - double-strand break repair, GO:0010332 - response to gamma radiation, GO:0016255 - attachment of GPI anchor to protein, GO:0042765 - GPI-anchor transamidase complex	TO:0000161 - radiation response trait	
22478	_	qPSR10	_	candidate gene for qPSR10			10	LOC_Os10g34840. Q9FWT5.	 Tolerance and resistance - Stress tolerance	Os10g0490100	LOC_Os10g34840.1				GO:0005576 - extracellular region, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22479	CRR1		CENTROMERIC RETROTRANSPOSONS OF RICE 1	Centromeric Retrotransposons of Rice1				a family of Ty3/gypsy-like retrotransposons.	 Other						GO:0032196 - transposition		
22480	ORF182	orf182	_				Mt	chimeric mitochondrial gene. MH027393.1-MH027410.1 (O. rufigopon), MH027411.1 (O. sativa). ORF182 differs from other cloned CMS-related genes, including WA352, ORF79, ORFH79 and WA314 (Xie et al. 2018).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion	TO:0000245 - pollen free, TO:0000232 - cytoplasmic male sterility (sensu Oryza)	
22481	LRR-RLK1	OsLRR-RLK1	LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 1	leucine-rich repeat receptor-like kinase 1	LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 1		6	LOC_Os06g47650.	 Tolerance and resistance - Insect resistance	Os06g0691800	LOC_Os06g47650.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0080027 - response to herbivore, GO:0005886 - plasma membrane, GO:0009601 - detection of insect, GO:0010364 - regulation of ethylene biosynthetic process, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0002213 - defense response to insect	TO:0000273 - armyworm resistance, TO:0002668 - jasmonic acid content, TO:0000454 - stem borer resistance	
22482	_	qHMS7 ORF2	_	QTL for hybrid male sterility on chromosome 7 ORF2			7	MG865761.1, MH377731.1, MH377733.1 (Oryza sativa), MH377730.1, MH377732.1, MH377734.1-MH377756.1 (Oryza rufipogon), MH377729.1 (Oryza officinalis), MH377728.1 (Oryza punctata), MG865762.1 (Oryza meridionalis). ORF2 encodes a toxic genetic element that aborts pollen in a sporophytic manner.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness	Os07g0646400	LOC_Os07g45210.2, LOC_Os07g45210.1					TO:0000218 - pollen abortion type	
22483	_	qHMS7 ORF3	_	QTL for hybrid male sterility on chromosome 7 ORF3			7	MG865763.1 (Oryza sativa), MH377757.1, MH377758.1 (Oryza rufipogon). ORF3 encodes an antidote that protects pollen in a gametophytic manner.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness	Os07g0646600	LOC_Os07g45194.1					TO:0000218 - pollen abortion type	
22484	_	qHMS7 ORF1	_	QTL for hybrid male sterility on chromosome 7 ORF1			7	MG865759.1 (Oryza sativa), MG865760.1 (Oryza meridionalis).		Os07g0646300	LOC_Os07g45195.1						
22485	ART2	OsART2	ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 2	Al resistance transcription factor 2	ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 2	art2	4		 Tolerance and resistance - Stress tolerance,  Other	Os04g0165200	LOC_Os04g08290.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003676 - nucleic acid binding, GO:0010044 - response to aluminum ion	TO:0000354 - aluminum sensitivity	PO:0009005 - root 
22486	FTIP7	OsFTIP7	FT-INTERACTING PROTEIN 7		FT-INTERACTING PROTEIN 7	Osftip7-1, Osftip7-2	5	Q60EW9.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0370600	LOC_Os05g30750.7, LOC_Os05g30750.6, LOC_Os05g30750.5, LOC_Os05g30750.4, LOC_Os05g30750.3, LOC_Os05g30750.2, LOC_Os05g30750.1				GO:0009901 - anther dehiscence, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009734 - auxin mediated signaling pathway, GO:0009555 - pollen development	TO:0000180 - spikelet fertility, TO:0000437 - male sterility	PO:0001035 - G anther dehiscence stage , PO:0009066 - anther , PO:0001007 - pollen development stage 
22487	_	OsPLL2, PLL2	_	Pectate lyase-like 2			1	LOC_Os01g62000.	 Biochemical character	Os01g0837100	LOC_Os01g62000.1				GO:0030570 - pectate lyase activity, GO:0046872 - metal ion binding, GO:0045490 - pectin catabolic process		
22488	_	OsPLL3, PLL3	_	Pectate lyase-like 3			2	LOC_Os02g12300. PO:0030123: panicle inflorescence.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0214400	LOC_Os02g12300.1				GO:0030570 - pectate lyase activity, GO:0045490 - pectin catabolic process, GO:0046872 - metal ion binding, GO:0009555 - pollen development, GO:0009845 - seed germination, GO:0010152 - pollen maturation	TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0007057 - 0 seed germination stage 
22489	_	OsPLL4, PLL4, OsPLL4.1, OsPLL4.2	_	Pectate lyase-like 4			4	LOC_Os04g05050. PO:0030123: panicle inflorescence.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0137201	LOC_Os04g05050.2, LOC_Os04g05050.1				GO:0009555 - pollen development, GO:0010152 - pollen maturation	TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0009073 - stigma 
22490	_	OsPLL5, PLL5	_	Pectate lyase-like 5			5	LOC_Os05g22800.	 Biochemical character	Os05g0293500	LOC_Os05g22800.1				GO:0045490 - pectin catabolic process, GO:0046872 - metal ion binding, GO:0030570 - pectate lyase activity		
22491	_	OsPLL6, PLL6	_	Pectate lyase-like 6			6	LOC_Os06g05209.	 Biochemical character	Os06g0144200	LOC_Os06g05209.1				GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity, GO:0046872 - metal ion binding		
22492	_	OsPLL7, PLL7	_	Pectate lyase-like 7			6	LOC_Os06g05260.	 Biochemical character	Os06g0144900	LOC_Os06g05260.1				GO:0046872 - metal ion binding, GO:0030570 - pectate lyase activity, GO:0045490 - pectin catabolic process		
22493	_	OsPLL8, PLL8	_	Pectate lyase-like 8			6	LOC_Os06g05272.	 Biochemical character		LOC_Os06g05272						
22494	_	OsPLL9, PLL9	_	Pectate lyase-like 9			6	LOC_Os06g38510. PO:0030123: panicle inflorescence.	 Biochemical character	Os06g0583900	LOC_Os06g38510.2, LOC_Os06g38510.1				GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity, GO:0046872 - metal ion binding		
22495	_	OsPLL10, PLL10	_	Pectate lyase-like 10			6	LOC_Os06g38520.	 Biochemical character	Os06g0584000	LOC_Os06g38520.1						
22496	_	OsPLL11, PLL11	_	Pectate lyase-like 11			8	LOC_Os08g18970.	 Biochemical character	Os08g0286100	LOC_Os08g18970.1				GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity, GO:0046872 - metal ion binding		
22497	_		_				1	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os01g0804400 	LOC_Os01g59020.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22498	_		_				2	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os02g0186900  	LOC_Os02g09400.1				GO:0010229 - inflorescence development, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22499	_		_				9	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os09g0441400   	LOC_Os09g26960.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0010229 - inflorescence development, GO:0016020 - membrane	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22500	_		_				4	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os04g0407900    	LOC_Os04g33370.1				GO:0016020 - membrane, GO:0010229 - inflorescence development, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22501	_		_				7	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os07g0635300     	LOC_Os07g44130.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0010229 - inflorescence development, GO:0005506 - iron ion binding, GO:0020037 - heme binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22502	_		_				1	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os01g0227800      	LOC_Os01g12770.1				GO:0016021 - integral to membrane, GO:0010229 - inflorescence development, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016020 - membrane	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22503	_		_				11	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os11g0289700       	LOC_Os11g18570.1				GO:0010268 - brassinosteroid homeostasis, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0010229 - inflorescence development, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity, GO:0055114 - oxidation reduction, GO:0007275 - multicellular organismal development, GO:0016132 - brassinosteroid biosynthetic process, GO:0016125 - sterol metabolic process	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22504	_		_				10	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os10g0486100        	LOC_Os10g34480.1				GO:0010229 - inflorescence development, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22505	_	PPR	_	Pentatricopeptide repeat (PPR) protein			1		 Reproductive organ - panicle	Os01g0589900	LOC_Os01g40720.1				GO:0010229 - inflorescence development, GO:0008270 - zinc ion binding, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22506	_	PPR	_	Pentatricopeptide repeat (PPR) protein			8		 Reproductive organ - panicle	Os08g0402600	LOC_Os08g31110.1				GO:0010229 - inflorescence development, GO:0005739 - mitochondrion, GO:0008270 - zinc ion binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22507	_	PPR	_	Pentatricopeptide repeat (PPR) protein			7		 Reproductive organ - panicle	Os07g0244400 	LOC_Os07g14100.1				GO:0009451 - RNA modification, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22508	_	PPR	_	Pentatricopeptide repeat (PPR) protein			3		 Reproductive organ - panicle	Os03g0363700 	LOC_Os03g24880.1				GO:0010229 - inflorescence development, GO:0005739 - mitochondrion	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22509	_	PPR	_	Pentatricopeptide repeat (PPR) protein			12		 Reproductive organ - panicle	Os12g0552300  	LOC_Os12g36620.1				GO:0009451 - RNA modification, GO:0010229 - inflorescence development, GO:0008270 - zinc ion binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22510	_	PPR	_	Pentatricopeptide repeat (PPR) protein			2	A3ABE1.	 Reproductive organ - panicle	Os02g0750400   	LOC_Os02g51480.1				GO:0009507 - chloroplast, GO:0006397 - mRNA processing, GO:0010229 - inflorescence development, GO:0008380 - RNA splicing, GO:0006417 - regulation of translation	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22511	_	PPR	_	Pentatricopeptide repeat (PPR) protein			8		 Reproductive organ - panicle	Os08g0340900    	LOC_Os08g25280.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22512	_	PPR	_	Pentatricopeptide repeat (PPR) protein			10		 Reproductive organ - panicle	Os10g0116000     	LOC_Os10g02650.1				GO:0010229 - inflorescence development, GO:0005739 - mitochondrion	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22513	_	PPR	_	Pentatricopeptide repeat (PPR) protein			11		 Reproductive organ - panicle	Os11g0433101      	LOC_Os11g24530.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22514	_	PPR	_	Pentatricopeptide repeat (PPR) protein			1		 Reproductive organ - panicle	Os01g0815900       	LOC_Os01g60000.1				GO:0009451 - RNA modification, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22515	_	PPR	_	Pentatricopeptide repeat (PPR) protein			7		 Reproductive organ - panicle	Os07g0635800        	LOC_Os07g44170.1				GO:0009451 - RNA modification, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22516	_	PPR	_	Pentatricopeptide repeat (PPR) protein			7		 Reproductive organ - panicle	Os07g0621100         	LOC_Os07g42880.1				GO:0005739 - mitochondrion, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22517	_	PPR	_	Pentatricopeptide repeat (PPR) protein			2		 Reproductive organ - panicle	Os02g0127600          	LOC_Os02g03530.1				GO:0010229 - inflorescence development, GO:0005739 - mitochondrion	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22518	_	PPR	_	Pentatricopeptide repeat (PPR) protein			3		 Reproductive organ - panicle	Os03g0283500           	LOC_Os03g17510.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22519	_	PPR	_	Pentatricopeptide repeat (PPR) protein			2		 Reproductive organ - panicle	Os02g0170000            	LOC_Os02g07360.1				GO:0005739 - mitochondrion, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22520	_	PPR	_	Pentatricopeptide repeat (PPR) protein			7		 Reproductive organ - panicle	Os07g0260000            	LOC_Os07g15640.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22521	UBP1-5	OsUBP1-5, OsUBP31, UBP31	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-5	ubiquitin-specific processing protease 1-5, Ubiquitin-specific protease 31	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-5		8	OsUBP31 in Ma et al. 2019.	 Biochemical character,  Reproductive organ - panicle	Os08g0527600	LOC_Os08g41580.1				GO:0010229 - inflorescence development, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity, GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22522	_		_				12		 Reproductive organ - panicle	Os12g0210601					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22523	UBP1-8	OsUBP1-8, OsUBP33, UBP33	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-8	Ubiquitin carboxyl-terminal hydrolase, ubiquitin-specific processing protease 1-8, Ubiquitin-specific protease 33	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-8		8	OsUBP33 in Ma et al. 2019.	 Biochemical character,  Reproductive organ - panicle	Os08g0528100	LOC_Os08g41630.1				GO:0010229 - inflorescence development, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination, GO:0008270 - zinc ion binding, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity	TO:0000621 - inflorescence development trait	PO:0009029 - stamen , PO:0001083 - inflorescence development stage 
22524	_		_	Formin-like protein			3		 Reproductive organ - panicle	Os03g0725200	LOC_Os03g51530.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22525	_		_				10		 Reproductive organ - panicle	Os10g0366400	LOC_Os10g22170.2, LOC_Os10g22170.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22526	_		_	"\"Protein CHUP1, chloroplastic\""			3		 Reproductive organ - panicle	Os03g0172100	LOC_Os03g07590.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22527	_		_	Pyruvate decarboxylase			5		 Reproductive organ - panicle	Os05g0469701					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22528	_		_	4-Coumarate-CoA ligase			4		 Reproductive organ - panicle	Os04g0310900					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22529	_		_				5	Transcription factor	 Reproductive organ - panicle	Os05g0162800	LOC_Os05g07010.2, LOC_Os05g07010.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22530	_		_				6		 Reproductive organ - panicle	Os06g0100550					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22531	_		_				7		 Reproductive organ - panicle	Os07g0646200	LOC_Os07g45180.1				GO:0008270 - zinc ion binding, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22532	_		_				9		 Reproductive organ - panicle	Os09g0513900	LOC_Os09g33882.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22533	_		_				12		 Reproductive organ - panicle	Os12g0234000	LOC_Os12g13174.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22534	_		_	ABC transporter B family member			1		 Reproductive organ - panicle	Os01g0290800					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22535	_		_				6		 Reproductive organ - panicle	Os06g0361500					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22536	_		_	Metallopeptidase family M24 containing protein			12		 Reproductive organ - panicle	Os12g0446500	LOC_Os12g26030.1				GO:0032968 - positive regulation of RNA elongation from RNA polymerase II promoter, GO:0006368 - RNA elongation from RNA polymerase II promoter, GO:0031491 - nucleosome binding, GO:0042393 - histone binding, GO:0010229 - inflorescence development, GO:0035101 - FACT complex, GO:0034724 - DNA replication-independent nucleosome organization	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22537	_		_	MATE efflux family protein			3	GO:1905428: regulation of plant organ formation.	 Reproductive organ - panicle	Os03g0229500	LOC_Os03g12790.1				GO:0005381 - iron ion transmembrane transporter activity, GO:0015238 - drug transporter activity, GO:0016021 - integral to membrane, GO:0017119 - Golgi transport complex, GO:0005770 - late endosome, GO:0010015 - root morphogenesis, GO:0006970 - response to osmotic stress, GO:0009624 - response to nematode, GO:0009408 - response to heat, GO:0009646 - response to absence of light, GO:0009737 - response to abscisic acid stimulus, GO:0055072 - iron ion homeostasis, GO:0010229 - inflorescence development, GO:0015297 - antiporter activity, GO:0006855 - multidrug transport	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22538	_	RLK	_	membrane-anchored receptor-like kinases			7	LOC_Os07g03810.	 Tolerance and resistance - Stress tolerance	Os07g0130100	LOC_Os07g03810.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0002229 - defense response to oomycetes, GO:0006952 - defense response, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0030246 - carbohydrate binding, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium	TO:0006001 - salt tolerance	
22539	_	RLK	_	membrane-anchored receptor-like kinase			8	LOC_Os08g03020.	 Tolerance and resistance - Stress tolerance	Os08g0124500	LOC_Os08g03020.1				GO:0030246 - carbohydrate binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0002229 - defense response to oomycetes, GO:0006952 - defense response, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium	TO:0006001 - salt tolerance	
22540	EBL1	qSSR8, OsEBL1	EBS-LIKE 1	candidate gene for qSSR8, EARLY BOLTING IN SHORT DAYS-like 1, EBS-like 1	EBS-LIKE 1		8	LOC_Os08g32620. an Arabidopsis EBS homolog.	 Tolerance and resistance - Stress tolerance	Os08g0421900	LOC_Os08g32620.4, LOC_Os08g32620.3, LOC_Os08g32620.2, LOC_Os08g32620.1				GO:0046872 - metal ion binding, GO:0009409 - response to cold, GO:0003682 - chromatin binding	TO:0000303 - cold tolerance	
22541	_	qSSR9-1	_	candidate gene for qSSR9-1			9	LOC_Os09g25190. GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance	Os09g0419500	LOC_Os09g25190.1				GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0000151 - ubiquitin ligase complex, GO:0046872 - metal ion binding, GO:0009409 - response to cold, GO:0031624 - ubiquitin conjugating enzyme binding, GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process, GO:0000209 - protein polyubiquitination	TO:0000303 - cold tolerance	
22542	2ODD11	OsODD11, ODD11, 2-ODD11, Os2-ODD11, 2ODD11, Os2ODD11	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 11	2-oxoglutarate-dependent dioxygenase 11	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 11		10	LOC_Os10g40934. melatonin 2-hydroxylase.	 Biochemical character	Os10g0558700	LOC_Os10g40934.9, LOC_Os10g40934.3, LOC_Os10g40934.2, LOC_Os10g40934.12, LOC_Os10g40934.11, LOC_Os10g40934.10, LOC_Os10g40934.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22543	2ODD19	OsODD19, ODD19, 2-ODD19, Os2-ODD19, Os2ODD19	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 19	2-oxoglutarate-dependent dioxygenase 19	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 19		8	LOC_Os08g37456. melatonin 2-hydroxylase.	 Biochemical character	Os08g0480200	LOC_Os08g37456.2, LOC_Os08g37456.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22544	_	OsNABP, NABP	_	Nucleic Acid Binding Protein			6			Os06g0215200 	LOC_Os06g11170.2, LOC_Os06g11170.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus		
22545	_		_				9	P8 		Os09g0560400 	LOC_Os09g38750.1				GO:0016021 - integral to membrane		
22546	_	OsEIN2.2, EIN2.2	_	Ethylene-insensitive protein 2.2			3	LOC_Os03g49400.		Os03g0700800	LOC_Os03g49400.1				GO:0016021 - integral to membrane, GO:0009873 - ethylene mediated signaling pathway, GO:0015086 - cadmium ion transmembrane transporter activity, GO:0005384 - manganese ion transmembrane transporter activity		
22547	_	OsEIN2.3, EIN2.3	_	Ethylene-insensitive protein 2.3			7	LOC_Os07g06300.		Os07g0157401	LOC_Os07g06300.1				GO:0046873 - metal ion transmembrane transporter activity, GO:0016020 - membrane		
22548	_	OsEIN2.4, EIN2.4	_	Ethylene-insensitive protein 2.4			7	LOC_Os07g06190.		Os07g0156732	LOC_Os07g06190.1				GO:0016020 - membrane, GO:0046873 - metal ion transmembrane transporter activity		
22550	_		_	RPP13-like protein 3			11	NBS-LRR type gene.		Os11g0590700	LOC_Os11g37860.1				GO:0043531 - ADP binding		
22551	_	ILL8	_				7	Q8H3C8.	 Biochemical character	Os07g0249800	LOC_Os07g14600.1				GO:0016787 - hydrolase activity		
22552	_		_				3			Os03g0629800 	LOC_Os03g43100.2, LOC_Os03g43100.1						
22553	_		_				1			Os01g0965300  							
22554	_		_				3			Os03g0105500   	LOC_Os03g01520.1						
22555	_		_				2			Os02g0269650    							
22556	_		_				10			Os10g0340100     	LOC_Os10g19910.1						
22557	_		_	Putative disease resistance protein RGA4			4			Os04g0112100      	LOC_Os04g02120.1				GO:0043531 - ADP binding		
22558	_		_	LRR receptor-like serine/threonine-protein kinase			9			Os09g0356800       	LOC_Os09g19229.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity		
22559	_		_				4			Os04g0397800        							
22560	_		_				12			Os12g0543800         	LOC_Os12g35910.1						
22561	_		_				7			Os07g0511400          	LOC_Os07g32710.1						
22562	_		_				10			Os10g0142700           							
22563	_		_				1			Os01g0204900            	LOC_Os01g10770.1						
22564	_	KIF19, OsKIF19	_	Kinesin-like protein KIF19			1	Q0JLE4. GO:0061673: mitotic spindle astral microtubule. GO:1990023: mitotic spindle midzone.		Os01g0605500 	LOC_Os01g42070.1				GO:0008574 - plus-end-directed microtubule motor activity, GO:0005634 - nucleus, GO:0005874 - microtubule, GO:0005871 - kinesin complex, GO:0000070 - mitotic sister chromatid segregation, GO:0007019 - microtubule depolymerization, GO:0007018 - microtubule-based movement, GO:0003777 - microtubule motor activity, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0008017 - microtubule binding		
22565	_		_				4		 Biochemical character	Os04g0116800             	LOC_Os04g02640.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0006633 - fatty acid biosynthetic process, GO:0016021 - integral to membrane		
22566	_		_				7			Os07g0162450 	LOC_Os07g06834.1						
22567	_		_	Disheveled-associated activator of morphogenesis 1			12			Os12g0169300  	LOC_Os12g07180.1						
22568	_		_				12			Os12g0228500   	LOC_Os12g12690.1						
22569	_		_	Glutathione S-transferase T3			1		 Biochemical character	Os01g0872900    	LOC_Os01g65240.1				GO:0016788 - hydrolase activity, acting on ester bonds		
22570	_		_				1			Os01g0698800     	LOC_Os01g50350.2, LOC_Os01g50350.1						
22571	_		_				11			Os11g0477400       	LOC_Os11g28910.1						
22572	_		_				2			Os02g0441000        							
22573	_		_	Transcription initiation factor IIE subunit alpha isoform X1			12	GO:0000993: RNA polymerase II complex binding. GO:0001097: TFIIH-class transcription factor complex binding. GO:0001113: transcriptional open complex formation at RNA polymerase II promoter.	 Other	Os12g0140266         	LOC_Os12g04595.1				GO:0043565 - sequence-specific DNA binding, GO:0005673 - transcription factor TFIIE complex		
22574	_		_				1			Os01g0137150         							
22575	_	PRX2, OsPRX2	_	Peroxidase 2			3		 Biochemical character	Os03g0434800	LOC_Os03g32050.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0042744 - hydrogen peroxide catabolic process, GO:0006979 - response to oxidative stress, GO:0005576 - extracellular region		
22576	_	CYP450	_	cytochrome P450			10		 Biochemical character	Os10g0513900	LOC_Os10g36980.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen		
22577	_	PMEI	_	PECTIN METHYLESTERASE INHIBITOR PROTEIN			12		 Biochemical character	Os12g0283400	LOC_Os12g18560.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
22578	DTM1	OsDTM1	DEFECTIVE TAPETUM AND MEIOCYTES 1			dtm1, dtm1-1, dtm1-2	7	LOC_Os07g43010. Q7XI45. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0622900	LOC_Os07g43010.1				GO:0009408 - response to heat, GO:0008233 - peptidase activity, GO:0009751 - response to salicylic acid stimulus, GO:0006996 - organelle organization, GO:0007029 - endoplasmic reticulum organization, GO:0016021 - integral to membrane, GO:0048653 - anther development, GO:0005787 - signal peptidase complex, GO:0005789 - endoplasmic reticulum membrane, GO:0009555 - pollen development, GO:0048658 - tapetal layer development, GO:0006465 - signal peptide processing	TO:0000259 - heat tolerance, TO:0000437 - male sterility, TO:0006007 - polysaccharide content	PO:0025545 - anther wall tapetum cell , PO:0001004 - anther development stage , PO:0000002 - anther wall 
22579	GAS2	OsGAS2	_	glucosidase II beta subunit, glucosidase II b subunit			1	Q5NBP9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0276800	LOC_Os01g16970.3, LOC_Os01g16970.2, LOC_Os01g16970.1				GO:0010506 - regulation of autophagy, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0034976 - response to endoplasmic reticulum stress, GO:0042742 - defense response to bacterium, GO:0006491 - N-glycan processing, GO:0005783 - endoplasmic reticulum, GO:0043067 - regulation of programmed cell death, GO:0009408 - response to heat, GO:0009409 - response to cold	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	
22580	_	HSP40	_	heat shock protein 40, TPR-containing HSP40			2		 Tolerance and resistance - Stress tolerance	Os02g0100300	LOC_Os02g01030.4, LOC_Os02g01030.3, LOC_Os02g01030.2, LOC_Os02g01030.1				GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0009408 - response to heat, GO:0046686 - response to cadmium ion, GO:0051085 - chaperone mediated protein folding requiring cofactor, GO:0046983 - protein dimerization activity	TO:0000259 - heat tolerance	
22581	ARE1	OsARE1	ABNORMAL CYTOKININ RESPONSE 1-1 REPRESSOR 1	abnormal cytokinin response 1-1 repressor1, abnormal cytokinin response 1-1 repressor 1, abc1-1 repressor 1		are1, are1-1, are1-2, ARE1-9311, ARE1-MH63, ARE1-NPB	8	LOC_Os08g12780. a genetic suppressor of a rice fd-gogat mutant defective.	 Character as QTL - Yield and productivity	Os08g0224300	LOC_Os08g12780.5, LOC_Os08g12780.4, LOC_Os08g12780.3, LOC_Os08g12780.2, LOC_Os08g12780.1				GO:0009507 - chloroplast, GO:0048573 - photoperiodism, flowering, GO:0006808 - regulation of nitrogen utilization, GO:0010150 - leaf senescence, GO:0016021 - integral to membrane	TO:0000495 - chlorophyll content, TO:0000396 - grain yield, TO:0000249 - leaf senescence, TO:0000137 - days to heading, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000326 - leaf color	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
22582	SNI1	OsSNI1	_	"\"Suppressor of NPR1-1, Inducible 1\""			2	LOC_Os02g20870. GO:0044212: transcription regulatory region DNA binding.		Os02g0312800	LOC_Os02g20870.2, LOC_Os02g20870.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0030915 - Smc5-Smc6 complex, GO:0006974 - response to DNA damage stimulus, GO:0016570 - histone modification, GO:0010113 - negative regulation of systemic acquired resistance, GO:0005634 - nucleus		
22583	WSL5	OsWSL5	WHITE STRIPE LEAF 5	white stripe leaf 5		wsl5	4	TO:0006060: leaf chlorosis. a chloroplast-targeted pentatricopeptide repeat protein.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os04g0684500	LOC_Os04g58780.2, LOC_Os04g58780.1				GO:0048366 - leaf development, GO:0042254 - ribosome biogenesis, GO:0009409 - response to cold, GO:0009658 - chloroplast organization, GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0008380 - RNA splicing, GO:0009880 - embryonic pattern specification, GO:0003723 - RNA binding	TO:0000303 - cold tolerance, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0000069 - variegated leaf	
22584	ATX1	OsATX1	ANTIOXIDANT PROTEIN 1	Antioxidant Protein1	ANTIOXIDANT PROTEIN 1	osatx1	8	TO:0006052: copper concentration. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os08g0205400	LOC_Os08g10480.1				GO:0005886 - plasma membrane, GO:0012505 - endomembrane system, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0046872 - metal ion binding, GO:0006825 - copper ion transport, GO:0005737 - cytoplasm, GO:0030001 - metal ion transport, GO:0005634 - nucleus	TO:0000021 - copper sensitivity, TO:0000080 - micronutrient sensitivity	PO:0000036 - leaf vascular system , PO:0020121 - lateral root , PO:0005020 - vascular bundle , PO:0005772 - exodermis , PO:0020124 - root stele 
22585	PHL3	OsPHL3	PHR1 LIKE 3	PHR1 like3, PHOSPHATE STARVATION RESPONSE 1-like 3	PHR1 LIKE 3	osphl3	9	LOC_Os09g12750. a G2-like family transcription factor.	 Reproductive organ - Heading date,  Other	Os09g0299000	LOC_Os09g12750.2, LOC_Os09g12750.1				GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0025034 - leaf 
22586	VAL1	OsVAL1, PurD, OsPurD	VIRESCENT-ALBINO LEAF 1			val1	8	LOC_Os08g09210. a phosphoribosylamine-glycine ligase.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others	Os08g0191200	LOC_Os08g09210.2, LOC_Os08g09210.1				GO:0005524 - ATP binding, GO:0048366 - leaf development, GO:0090056 - regulation of chlorophyll metabolic process, GO:0006164 - purine nucleotide biosynthetic process, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0051302 - regulation of cell division, GO:0043476 - pigment accumulation, GO:0046872 - metal ion binding, GO:0004637 - phosphoribosylamine-glycine ligase activity, GO:0009113 - purine base biosynthetic process	TO:0002715 - chloroplast development trait, TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000370 - leaf width, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color	PO:0001050 - leaf development stage 
22587	LAIR		LRK ANTISENSE INTERGENIC RNA	LRK Antisense Intergenic RNA, Long noncoding RNA LAIR			2	JX512719-JX512728. GO:0080182: histone H3-K4 trimethylation.	 Character as QTL - Yield and productivity,  Other	Os02g0154100					GO:0010468 - regulation of gene expression, GO:0016571 - histone methylation, GO:0043984 - histone H4-K16 acetylation, GO:0016570 - histone modification, GO:0016569 - covalent chromatin modification	TO:0000152 - panicle number, TO:0000396 - grain yield, TO:0006032 - panicle size	
22588	NRTP1	OsNRTP1	NECROTIC ROOT TIP 1	Necrotic root tip 1		nrtp1-D	12	LOC_Os12g17410. a CC-NB-LRR-type protein. GO:0035732: nitric oxide storage.	 Vegetative organ - Root,  Tolerance and resistance	Os12g0272800	LOC_Os12g17410.1				GO:0009751 - response to salicylic acid stimulus, GO:0048364 - root development, GO:0008219 - cell death, GO:0043531 - ADP binding, GO:0009753 - response to jasmonic acid stimulus	TO:0000652 - leaf necrosis, TO:0000227 - root length, TO:0000207 - plant height, TO:0000656 - root development trait, TO:0000172 - jasmonic acid sensitivity	PO:0007520 - root development stage , PO:0009005 - root 
22589	KCH2	OsKCH2	_	Kinesins with a calponin homology domain 2, Kinesins with CH domain 2		kch2	4	a plant-specific kinesin-14. a preprophase band-associated kinesin-14.		Os04g0467901	LOC_Os04g39280.2, LOC_Os04g39280.1				GO:0008017 - microtubule binding, GO:0007018 - microtubule-based movement, GO:0060001 - minus-end directed microfilament motor activity, GO:0003777 - microtubule motor activity, GO:0005524 - ATP binding, GO:0005874 - microtubule, GO:0005871 - kinesin complex, GO:0016887 - ATPase activity		
22590	MYB80	OsMYB80	_	MYB80 transcription factor			4	Q7XQN1. GO:0044212: transcription regulatory region DNA binding. an AtMYB80 homolog.		Os04g0470600	LOC_Os04g39470.1				GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0048658 - tapetal layer development, GO:0043565 - sequence-specific DNA binding		
22591	PMR	OsPMR	POLLEN MITOSIS RELATIVE	Pollen Mitosis Relative		pmr-1, pmr-2	5	GO:0140014: mitotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility	Os05g0420800	LOC_Os05g34780.1				GO:0009555 - pollen development, GO:0051052 - regulation of DNA metabolic process, GO:0005634 - nucleus	TO:0000421 - pollen fertility, TO:0000180 - spikelet fertility	PO:0009066 - anther , PO:0001007 - pollen development stage 
22592	GAUT4	OsGAUT4	GALACTURONOSYLTRANSFERASE 4	Galacturonosyltransferase 4	GALACTURONOSYLTRANSFERASE 4		8	GO:0071555: cell wall organization.	 Biochemical character	Os08g0327100	LOC_Os08g23780.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0045489 - pectin biosynthetic process, GO:0000139 - Golgi membrane		
22593	DSSR1	OsDSSR1	DROUGHT AND SALT STRESS RESPONSE 1	drought and salt stress response-1			9	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os09g0109600	LOC_Os09g02180.1				GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006002 - proline content, TO:0000276 - drought tolerance, TO:0000340 - total soluble sugar content	PO:0009047 - stem , PO:0009005 - root , PO:0020141 - stem node , PO:0025034 - leaf 
22594	CUL1-2	OsCUL1-2	CULLIN 1-2	Cullin 1-2	CULLIN 1-2		5		 Tolerance and resistance - Stress tolerance	Os05g0149600	LOC_Os05g05700.2, LOC_Os05g05700.1				GO:0031625 - ubiquitin protein ligase binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0019005 - SCF ubiquitin ligase complex, GO:0016567 - protein ubiquitination, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009010 - seed 
22595	CUL1-3	OsCUL1-3	CULLIN 1-3	Cullin 1-3	CULLIN 1-3		1		 Tolerance and resistance - Stress tolerance	Os01g0369200	LOC_Os01g27160.1				GO:0009737 - response to abscisic acid stimulus, GO:0019005 - SCF ubiquitin ligase complex, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0031625 - ubiquitin protein ligase binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0016567 - protein ubiquitination, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0031461 - cullin-RING ubiquitin ligase complex	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed 
22596	PKPA1	OsPKpa1	PYRUVATE KINASE P ALPHA 1	Pyruvate kinase palpha1, plastidic PK alpha 1	PYRUVATE KINASE P ALPHA 1		7		 Biochemical character,  Seed - Physiological traits - Storage substances	Os07g0181000	LOC_Os07g08340.2, LOC_Os07g08340.1				GO:0004743 - pyruvate kinase activity, GO:0005737 - cytoplasm, GO:0009570 - chloroplast stroma, GO:0030955 - potassium ion binding, GO:0000287 - magnesium ion binding, GO:0016301 - kinase activity, GO:0009501 - amyloplast, GO:0008610 - lipid biosynthetic process, GO:0019252 - starch biosynthetic process	TO:0000696 - starch content, TO:0000587 - endosperm quality, TO:0000104 - floury endosperm	PO:0009089 - endosperm 
22597	PPS1	OsPPS1	_				12	a DYW motif-containing PPR protein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os12g0552300  	LOC_Os12g36620.1				GO:0008270 - zinc ion binding, GO:0009451 - RNA modification	TO:0000053 - pollen sterility	
22598	DRZ1	OsDRZ1	DROUGHT RESPONSIVE ZINC FINGER PROTEIN 1	drought responsive zinc finger protein 1	DROUGHT RESPONSIVE ZINC FINGER PROTEIN 1		3		 Tolerance and resistance - Stress tolerance	Os03g0437100	LOC_Os03g32220.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0009414 - response to water deprivation	TO:0006002 - proline content, TO:0000276 - drought tolerance	
22599	STD1	OsSTD1	STEMLESS DWARF 1	Stemless Dwarf 1		std1	2	Q6K990. a phragmoplast-associated kinesin-related protein. a homolog of AtPAKRP2. GO:0099402: plant organ development.	 Vegetative organ - Culm	Os02g0810200	LOC_Os02g56540.1				GO:0051301 - cell division, GO:0009524 - phragmoplast, GO:0000910 - cytokinesis, GO:0051326 - telophase, GO:0008017 - microtubule binding, GO:0000919 - cell plate formation, GO:0003777 - microtubule motor activity, GO:0007018 - microtubule-based movement, GO:0005871 - kinesin complex, GO:0005524 - ATP binding, GO:0008574 - plus-end-directed microtubule motor activity, GO:0005874 - microtubule, GO:0016887 - ATPase activity	TO:0000207 - plant height	
22600	PLS3	OsPLS3, SPL21, spl21(t), OsSPL21, OsGCNT, GCNT, OsPSL, PSL, C2GNT1, OsC2GNT1	PRECOCIOUS LEAF SENESCENCE 3	precocious leaf senescence3, beta-1, 6-N-acetylglucosaminyl transferase, spotted-leaf 21, premature senescence leaf, core 2/I branching beta-1, 6-N- acetylglucosaminyl transferase-1		ospls3, spl21, psl	12	DUF266-containing protein. GT14-like family. GO:1900055: regulation of leaf senescence. PO:0030123: panicle inflorescence.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os12g0618800	LOC_Os12g42420.1				GO:0006486 - protein amino acid glycosylation, GO:0008375 - acetylglucosaminyltransferase activity, GO:0042742 - defense response to bacterium, GO:0012501 - programmed cell death, GO:0005794 - Golgi apparatus, GO:0009694 - jasmonic acid metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0031348 - negative regulation of defense response, GO:0009873 - ethylene mediated signaling pathway, GO:0009736 - cytokinin mediated signaling, GO:0042542 - response to hydrogen peroxide, GO:0009735 - response to cytokinin stimulus, GO:0010150 - leaf senescence, GO:0016021 - integral to membrane	TO:0000605 - hydrogen peroxide content, TO:0000063 - mimic response, TO:0002668 - jasmonic acid content, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000175 - bacterial blight disease resistance, TO:0000167 - cytokinin sensitivity, TO:0000249 - leaf senescence	PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
22601	FLO13	OsNDUFA9, NDUFA9	FLOURY ENDOSPERM 3	Mitochondrial complex I accessory subunit OsNDUFA9, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, floury endosperm 3			2	GO:1901006: ubiquinone-6 biosynthetic process.	 Biochemical character,  Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm	Os02g0816800	LOC_Os02g57180.2, LOC_Os02g57180.1				GO:0050662 - coenzyme binding, GO:0005739 - mitochondrion, GO:0019252 - starch biosynthetic process, GO:0009790 - embryonic development, GO:0005747 - mitochondrial respiratory chain complex I, GO:0009651 - response to salt stress, GO:0003954 - NADH dehydrogenase activity	TO:0000592 - 1000-dehulled grain weight, TO:0002658 - starch grain synthesis, TO:0000104 - floury endosperm	
22602	DUA1	OsDUA1	_				9	RNA editing factor. GO:1900865: chloroplast RNA modification.	 Tolerance and resistance - Stress tolerance	Os09g0474051	LOC_Os09g29825.1				GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0009451 - RNA modification, GO:0008270 - zinc ion binding	TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait	
22603	_	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, TGW3, OsGSK5/OsSK41, OsSK41/OsGSK5	_	GSK3/SHAGGY-Like Kinase 41, QTL FOR THOUSAND GRAIN WEIGHT ON CHROMOSOME 3, GSK3-like Kinase 5, Glycogen Synthase Kinase-like 5, thousand grain weight 3			3	LOC_Os03g62500. a GSK3/SHAGGY-like kinase clade IV member. GEO DataSets: GSE98924. an orthologue of a Medicago GSK3. TO:0000919: grain weight. PO:0030123: panicle inflorescence.	 Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0841800	LOC_Os03g62500.1				GO:0005982 - starch metabolic process, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0009651 - response to salt stress, GO:0010233 - phloem transport, GO:0042742 - defense response to bacterium, GO:0005975 - carbohydrate metabolic process	TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000653 - seed development trait, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000696 - starch content, TO:0000391 - seed size	PO:0001170 - seed development stage , PO:0009005 - root 
22604	HSP40	OsHSP40	HEAT SHOCK PROTEIN 40	heat shock protein 40	HEAT SHOCK PROTEIN 40	oshsp40	2		 Tolerance and resistance - Stress tolerance	Os02g0100300	LOC_Os02g01030.4, LOC_Os02g01030.3, LOC_Os02g01030.2, LOC_Os02g01030.1				GO:0009651 - response to salt stress, GO:0046983 - protein dimerization activity, GO:0051085 - chaperone mediated protein folding requiring cofactor, GO:0046686 - response to cadmium ion, GO:0005829 - cytosol	TO:0006001 - salt tolerance	
22605	pTAC2	OspTAC2	PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME PROTEIN 2	plastid transcriptionally active chromosome protein 2	PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME PROTEIN 2	osptac2	3	a pentatricopeptide repeat protein. an ortholog of Arabidopsis  pTAC2.	 Coloration - Chlorophyll	Os03g0824100	LOC_Os03g60910.1				GO:0009507 - chloroplast, GO:0009658 - chloroplast organization	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait	
22606	TLP27	OsTLP27	THYLAKOID LUMENAL PROTEIN 27	Thylakoid lumenal protein 27	THYLAKOID LUMENAL PROTEIN 27		1	AtTLP homolog. TO:0020116: photochemical quenching.	 Coloration - Chlorophyll	Os01g0102300	LOC_Os01g01280.1				GO:0015979 - photosynthesis, GO:0009658 - chloroplast organization, GO:0043476 - pigment accumulation, GO:0007623 - circadian rhythm, GO:0009543 - chloroplast thylakoid lumen	TO:0000494 - pigment content, TO:0002715 - chloroplast development trait	PO:0025034 - leaf , PO:0020104 - leaf sheath 
22607	MEG2	OsMEG2	MATERNALLY EXPRESSED GENE 2	Maternally Expressed Gene2	MATERNALLY EXPRESSED PROTEIN 2		7			Os07g0296900	LOC_Os07g20110.1						
22608	LAS	OsLAS	LETHAL ALBINIC SEEDLING	Lethal albinic seedling		las	2		 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os02g0538000	LOC_Os02g33500.1				GO:0006435 - threonyl-tRNA aminoacylation, GO:0009570 - chloroplast stroma, GO:0009658 - chloroplast organization, GO:0004829 - threonine-tRNA ligase activity, GO:0005739 - mitochondrion, GO:0010027 - thylakoid membrane organization, GO:0005524 - ATP binding, GO:0005737 - cytoplasm	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000495 - chlorophyll content	PO:0025034 - leaf 
22609	RAD52-2A	OsRad52-2a	RADIATION SENSITIVE 52-2A	Radiation sensitive 52-2a			3		 Tolerance and resistance - Stress tolerance	Os03g0851500	LOC_Os03g63450.2, LOC_Os03g63450.1				GO:0000733 - DNA strand renaturation, GO:0003690 - double-stranded DNA binding, GO:0003677 - DNA binding, GO:0009507 - chloroplast, GO:0003697 - single-stranded DNA binding, GO:0000724 - double-strand break repair via homologous recombination		
22610	_		_	rice homolog of AtRING1A/1B.			4			Os04g0450400	LOC_Os04g37740.1				GO:0016567 - protein ubiquitination, GO:0016021 - integral to membrane		
22611	_	MEG2	_	Maternally Expressed Gene2		meg2-1, meg2-2	7	LOC_Os07g20110.	 Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os07g0296900	LOC_Os07g20110.1				GO:0048316 - seed development	TO:0000696 - starch content, TO:0000146 - seed length, TO:0000149 - seed width, TO:0000304 - seed thickness, TO:0000382 - 1000-seed weight, TO:0000064 - embryo related trait	PO:0001170 - seed development stage 
22612	2ODD3	2-ODD3, Os2-ODD3, Os2ODD3	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 3	2-oxoglutarate-dependent dioxygenase 3	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 3		4		 Biochemical character	Os04g0581000	LOC_Os04g49194.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22613	2ODD5	2-ODD5, Os2-ODD5, Os2ODD5	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 5	2-oxoglutarate-dependent dioxygenase 5	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 5		1		 Biochemical character	Os01g0832600	LOC_Os01g61610.4, LOC_Os01g61610.3, LOC_Os01g61610.2, LOC_Os01g61610.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22614	2ODD6	2-ODD6, Os2-ODD6, Os2ODD6	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 6	2-oxoglutarate-dependent dioxygenase 6	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 6		5	GO:0120091: jasmonic acid hydrolase	 Biochemical character	Os05g0127500	LOC_Os05g03640.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22615	2ODD7	2-ODD7, Os2-ODD7, Os2ODD7	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 7	2-oxoglutarate-dependent dioxygenase 7	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 7		7		 Biochemical character	Os07g0169600	LOC_Os07g07410.2, LOC_Os07g07410.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22616	2ODD9	2-ODD9, Os2-ODD9, Os2ODD9	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 9	2-oxoglutarate-dependent dioxygenase 9	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 9		10		 Biochemical character	Os10g0523100	LOC_Os10g37899.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22617	2ODD10	2-ODD10, Os2-ODD10, Os2ODD10	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 10	2-oxoglutarate-dependent dioxygenase 10	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 10		6		 Biochemical character	Os06g0162500	LOC_Os06g06720.1				GO:0051213 - dioxygenase activity, GO:0005777 - peroxisome, GO:0046872 - metal ion binding		
22618	2ODD12	2-ODD12, Os2-ODD12, Os2ODD12	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 12	2-oxoglutarate-dependent dioxygenase 12	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 12		2		 Biochemical character	Os02g0280700	LOC_Os02g17940.6, LOC_Os02g17940.5, LOC_Os02g17940.4, LOC_Os02g17940.3, LOC_Os02g17940.2, LOC_Os02g17940.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22619	2ODD13	2-ODD13, Os2-ODD13, Os2ODD13	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 13	2-oxoglutarate-dependent dioxygenase 13	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 13		6		 Biochemical character	Os06g0176700/Os06g0178500					GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
22620	2ODD16	2-ODD16, Os2-ODD16, Os2ODD16	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 16	2-oxoglutarate-dependent dioxygenase 16	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 16		1		 Biochemical character	Os01g0351800	LOC_Os01g24980.2, LOC_Os01g24980.1				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
22622	2ODD18	2-ODD18, Os2-ODD18, Os2ODD18	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 18	2-oxoglutarate-dependent dioxygenase 18	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 18		1		 Biochemical character	Os01g0352100	LOC_Os01g25010.1				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
22623	2ODD20	2-ODD20, Os2-ODD20, Os2ODD20	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 20	2-oxoglutarate-dependent dioxygenase 20	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 20		3		 Biochemical character	Os03g0860600	LOC_Os03g64280.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22624	2ODD22	2-ODD22, Os2-ODD22, Os2ODD22	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 22	2-oxoglutarate-dependent dioxygenase 22	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 22		3		 Biochemical character	Os03g0618300	LOC_Os03g42130.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22625	2ODD23	2-ODD23, Os2-ODD23, Os2ODD23	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 23	2-oxoglutarate-dependent dioxygenase 23	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 23		4		 Biochemical character	Os04g0182200	LOC_Os04g10350.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22626	2ODD25	2-ODD25, Os2-ODD25, Os2ODD25	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 25	2-oxoglutarate-dependent dioxygenase 25	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 25		3		 Biochemical character	Os03g0439500	LOC_Os03g32480.1, LOC_Os03g32470.2, LOC_Os03g32470.1				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
22627	2ODD26	2-ODD26, Os2-ODD26, Os2ODD26	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 26	2-oxoglutarate-dependent dioxygenase 26	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 26		3		 Biochemical character	Os03g0856000	LOC_Os03g63900.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22628	2ODD27	2-ODD27, Os2-ODD27, Os2ODD27	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 27	2-oxoglutarate-dependent dioxygenase 27	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 27		6		 Biochemical character	Os06g0178700	LOC_Os06g08060.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22629	2ODD28	2-ODD28, Os2-ODD28, Os2ODD28	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 28	2-oxoglutarate-dependent dioxygenase 28	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 28		8		 Biochemical character	Os08g0390200	LOC_Os08g30080.1				GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity, GO:0051213 - dioxygenase activity		
22630	2ODD29	2-ODD29, Os2-ODD29, Os2ODD29	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 29	2-oxoglutarate-dependent dioxygenase 29	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 29		6		 Biochemical character	Os06g0255100	LOC_Os06g14400.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22631	2ODD30	2-ODD30, Os2-ODD30, Os2ODD30	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 30	2-oxoglutarate-dependent dioxygenase 30	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 30		1		 Biochemical character	Os01g0536400	LOC_Os01g35230.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22632	2ODD33	2-ODD33, Os2-ODD33, Os2ODD33	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 33	2-oxoglutarate-dependent dioxygenase 33	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 33		9	melatonin 2- hydroxylase.	 Biochemical character	Os09g0245500	LOC_Os09g07020.2, LOC_Os09g07020.1				GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity, GO:0051213 - dioxygenase activity		
22633	2ODD34	2-ODD34, Os2-ODD34, Os2ODD34	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 34	2-oxoglutarate-dependent dioxygenase 34	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 34		8		 Biochemical character	Os08g0417100	LOC_Os08g32170.1				GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity, GO:0051213 - dioxygenase activity		
22634	_	OsSK12/OsGSK3, OsSK12, OsGSK3, SK12, GSK3	_	GSK3/SHAGGY-Like Kinase 12, GSK3-like Kinase 3			1	LOC_Os01g19150. a GSK3/SHAGGY-like kinase clade I member.	 Biochemical character	Os01g0296100	LOC_Os01g19150.5, LOC_Os01g19150.4, LOC_Os01g19150.3, LOC_Os01g19150.2, LOC_Os01g19150.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
22635	_	OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, GSK4	_	GSK3/SHAGGY-Like Kinase 23, GSK3-like Kinase 4			2	LOC_Os02g14130. a GSK3/SHAGGY-like kinase clade II member.	 Biochemical character	Os02g0236200	LOC_Os02g14130.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
22636	_	OsSTA147, STA147	_				5	LOC_Os05g28710 (not found in MSU Rice Genome Annotation Project Release 7 data). a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn								PO:0009066 - anther 
22637	ARP6	OsARP6	ACTIN RELATED PROTEIN 6				1	LOC_Os01g16414. Q5NBI2. a key component of the H2A.Z exchange complex. a key component of SWR1c.		Os01g0269900	LOC_Os01g16414.4, LOC_Os01g16414.3, LOC_Os01g16414.2, LOC_Os01g16414.1				GO:0005634 - nucleus, GO:0008283 - cell proliferation, GO:0006338 - chromatin remodeling, GO:0006952 - defense response, GO:0009910 - negative regulation of flower development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006970 - response to osmotic stress, GO:0009266 - response to temperature stimulus, GO:0009845 - seed germination, GO:0006950 - response to stress	TO:0000495 - chlorophyll content	
22638	MORC1	OsMORC1	MICRORCHIDIA PROTEIN 1	Microrchidia protein 1	MICRORCHIDIA PROTEIN 1		10	LOC_Os10g10190.1		Os10g0181700	LOC_Os10g10190.1				GO:0016301 - kinase activity, GO:0005737 - cytoplasm		
22639	MORC4	OsMORC4	MICRORCHIDIA PROTEIN 4	Microrchidia protein 4	MICRORCHIDIA PROTEIN 4		2	LOC_Os02g27000.1		Os02g0469300	LOC_Os02g27000.1				GO:0005634 - nucleus, GO:0005524 - ATP binding		PO:0005052 - plant callus 
22640	MORC6A	OsMORC6a	MICRORCHIDIA PROTEIN 6A	Microrchidia protein 6a	MICRORCHIDIA PROTEIN 6A		6	LOC_Os06g28060.1		Os06g0474900	LOC_Os06g28060.3, LOC_Os06g28060.2, LOC_Os06g28060.1				GO:0005634 - nucleus		PO:0000003 - whole plant 
22641	MORC6B	OsMORC6b	MICRORCHIDIA PROTEIN 6B	Microrchidia protein 6b	MICRORCHIDIA PROTEIN 6B		11	LOC_Os11g26830.1		Os11g0454800	LOC_Os11g26830.1				GO:0005634 - nucleus		PO:0009010 - seed 
22642	MORC6C	OsMORC6c	MICRORCHIDIA PROTEIN 6C	Microrchidia protein 6c	MICRORCHIDIA PROTEIN 6C		1	LOC_Os01g36840.1		Os01g0549200	LOC_Os01g36840.3, LOC_Os01g36840.2, LOC_Os01g36840.1				GO:0005739 - mitochondrion		
22643	MORC7	OsMORC7	MICRORCHIDIA PROTEIN 7	Microrchidia protein 7	MICRORCHIDIA PROTEIN 7		4	LOC_Os04g24550.1		Os04g0311100	LOC_Os04g24550.1				GO:0005634 - nucleus		PO:0009010 - seed 
22644	_	OrGSE	_	Oryza rufipogon GREEN SPECIAL EXPRESS				OrGSE corresponds to LOC_Os08g02210 (Os08g0114100) of Oryza sativa. OrGSE shares homology with D27 (Os11g0587000) protein in rice. PO:0030117: spike inflorescence.							GO:0009507 - chloroplast		PO:0009047 - stem , PO:0025034 - leaf 
22645	CD		CLUSTER AND DWARF 	cluster and dwarf		cd	8	Th T-DNA insertion of cluster and dwarf (cd) mutant  was in close proximity to the miR156f gene and was associated with its up-regulation (Dai et al. 2018). 	 Vegetative organ - Culm,  Character as QTL - Yield and productivity							TO:0000346 - tiller number, TO:0000207 - plant height	
22646	RAB5-GEF2	Rab5-GEF2, OsRab5-GEF2, Rab5GEF2, OsRab5GEF2	_	Guanine nucleotide exchange factor 2 for Rab5 proteins			3	LOC_Os03g62580.1		Os03g0842700	LOC_Os03g62580.7, LOC_Os03g62580.6, LOC_Os03g62580.5, LOC_Os03g62580.4, LOC_Os03g62580.3, LOC_Os03g62580.2, LOC_Os03g62580.1				GO:0015031 - protein transport, GO:0016482 - cytoplasmic transport, GO:0016021 - integral to membrane	TO:0000490 - protein composition related trait	
22647	_		_	TraB family protein			8	LOC_Os08g43230. Os08g43230 might play vital roles in salt stress tolerance (Nounjan et al. 2018).	 Tolerance and resistance - Stress tolerance	Os08g0545700	LOC_Os08g43230.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
22648	_		_	cytochrome P450			8	LOC_Os08g43440. Os08g43440 might play vital roles in salt stress tolerance (Nounjan et al. 2018).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0547900	LOC_Os08g43440.1				GO:0005506 - iron ion binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0020037 - heme binding	TO:0006001 - salt tolerance	
22649	RBP-L	OsRBP-L	RNA-BINDING PROTEIN L	RNA-Binding Protein L	RNA-BINDING PROTEIN L		4	LOC_Os04g53440. an interacting partner of RBP-P.		Os04g0625800	LOC_Os04g53440.2, LOC_Os04g53440.1				GO:0005829 - cytosol, GO:0003729 - mRNA binding		
22650	RBP-208	OsRBP-208	RNA-BINDING PROTEIN 208	RNA-Binding Protein 208	RNA-BINDING PROTEIN 208		8	LOC_Os08g40880. an interacting partner of RBP-P.		Os08g0520300	LOC_Os08g40880.1				GO:0003729 - mRNA binding		
22651	RAD17	OsRAD17	RADIATION SENSITIVE 17	Radiation sensitive 17		Osrad17, Osrad17-1, Osrad17-2, and Osrad17-3	3	LOC_Os03g13850. GO:1990918: double-strand break repair involved in meiotic recombination.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0242100	LOC_Os03g13850.1				GO:0000077 - DNA damage checkpoint, GO:0000790 - nuclear chromatin, GO:0033314 - mitotic cell cycle DNA replication checkpoint, GO:0003682 - chromatin binding, GO:0006302 - double-strand break repair		
22652	XA44	xa44, xa44(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 44				11	a recessive resistance gene conferring Xoo resistance. two candidate genes: Os11g0690066 and Os11g0690466. 	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
22653	XA43	Xa43(t), Xa43	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 43				11	a single dominant resistance gene conferring Xoo resistance. two candidate genes: Os11g0687700 and Os11g0688000.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
22654	HEIP1	OsHEIP1	HEI10 INTERACTION PROTEIN 1	HEI10 Interaction Protein 1	HEI10 INTERACTION PROTEIN 1	heip1, heip1-1, heip1-2, heip1-3, heip1-4	1		 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0167700	LOC_Os01g07330.4, LOC_Os01g07330.3, LOC_Os01g07330.2, LOC_Os01g07330.1				GO:0051026 - chiasma formation, GO:0010520 - regulation of reciprocal meiotic recombination		
22655	_	Bph33	_	BROWN PLANTHOPPER RESISTANCE 33			4	LOC_Os04g02520. Bph33 was present in BPH-resistant Sri Lankan rice cultivars KOLAYAL and POLIYAL.	 Tolerance and resistance - Insect resistance	Os04g0115650	LOC_Os04g02520.1				GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
22656	_	ZnF5, OrZnF5	_	zinc-finger protein 5			7	ZnF5 in RPAD (RICE PLANT ARCHITECTURE DOMESTICATION) locus of O. rufipogon (deleted in O. sativa). MF503970, MF503971, MF503972 (O. rufipogon). ASR75319 (O. rufipogon).	 Character as QTL - Yield and productivity							TO:0000449 - grain yield per plant, TO:0000567 - tiller angle, TO:0000346 - tiller number, TO:0000447 - filled grain number	
22657	_	ZnF7, OrZnF7	_	zinc-finger protein 7			7	ZnF7 in RPAD (RICE PLANT ARCHITECTURE DOMESTICATION) locus of O. rufipogon (deleted in O. sativa). MF503970, MF503971, MF503972 (O. rufipogon). ASR75325 (O. rufipogon).	 Character as QTL - Yield and productivity							TO:0000346 - tiller number, TO:0000567 - tiller angle, TO:0000447 - filled grain number, TO:0000449 - grain yield per plant	
22658	_	ZnF8, OrZnF8	_	zinc-finger protein 8			7	ZnF8 in RPAD (RICE PLANT ARCHITECTURE DOMESTICATION) locus of O. rufipogon (deleted in O. sativa). MF503970, MF503971, MF503972 (O. rufipogon). ASR75331 (O. rufipogon).	 Character as QTL - Yield and productivity							TO:0000567 - tiller angle, TO:0000449 - grain yield per plant, TO:0000447 - filled grain number, TO:0000346 - tiller number	
22659	ARD4	OsARD4	ACIREDUCTONE DIOXYGENASE 4	acireductone dioxygenase 4	ACIREDUCTONE DIOXYGENASE 4		10	LOC_Os10g28360.1 Q7XEJ5. TO:0001041: root yield.	 Biochemical character,  Vegetative organ - Root	Os10g0419500	LOC_Os10g28360.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0048364 - root development, GO:0010311 - lateral root formation, GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity, GO:0005506 - iron ion binding, GO:0019509 - methionine salvage, GO:0006555 - methionine metabolic process, GO:0080022 - primary root development	TO:0000043 - root anatomy and morphology trait	PO:0009005 - root 
22660	ACL2	OsACL2	ABAXIALLY CURLED LEAF 2	abaxially curled leaf 2			2	LOC_Os02g33330.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0536500	LOC_Os02g33330.1				GO:0048366 - leaf development, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000085 - leaf rolling	PO:0001050 - leaf development stage , PO:0020104 - leaf sheath , PO:0025034 - leaf 
22661	NLS1	OsNLS1	NECROTIC LEAF SHEATH 1	necrotic leaf sheath 1		nls1-1D, nls1-2D	11	a CC-NB-LRR-type R gene. LOC_Os11g14380.	 Tolerance and resistance - Disease resistance	Os11g0249000 	LOC_Os11g14380.1				GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0043531 - ADP binding, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22662	RPM1 	OsRPM1	_	disease resistance protein RPM1 homolog			9	LOC_Os09g09490.	 Tolerance and resistance	Os09g0267800	LOC_Os09g09490.1				GO:0009626 - plant-type hypersensitive response		
22663	STI1A	OsHop/Sti1a, Hop/Sti1a, Sti1a	STRESS-INDUCED PROTEIN 1A	stress-induced protein 1a, Hop/Sti1 homolog a, STI1 homolog a, Hsp90 co-chaperone Hop/Sti1a, Hsp70-Hsp90 Organizing Protein/stress-induced protein 1a	STRESS-INDUCED PROTEIN 1A		2		 Tolerance and resistance - Disease resistance	Os02g0644100	LOC_Os02g43020.1				GO:0005783 - endoplasmic reticulum, GO:0051879 - Hsp90 protein binding, GO:0050832 - defense response to fungus, GO:0010200 - response to chitin	TO:0000074 - blast disease, TO:0000439 - fungal disease resistance	
22664	STI1B	OsHop/Sti1b, Hop/Sti1b, Sti1b	STRESS-INDUCED PROTEIN 1B	stress-induced protein 1b, Hop/Sti1 homolog b, STI1 homolog b, Hsp90 co-chaperone Hop/Sti1b, Hsp70-Hsp90 Organizing Protein/stress-induced protein 1b	STRESS-INDUCED PROTEIN 1B		4		 Tolerance and resistance - Disease resistance	Os04g0538000	LOC_Os04g45480.1				GO:0050832 - defense response to fungus, GO:0051879 - Hsp90 protein binding, GO:0010200 - response to chitin, GO:0005783 - endoplasmic reticulum	TO:0000074 - blast disease	
22665	SLL2	OsSLL2	SHALLOT-LIKE 2 	shallot-like 2		sll2	7	LOC_Os07g38664.	 Vegetative organ - Leaf	Os07g0574400	LOC_Os07g38664.1					TO:0000316 - photosynthetic ability, TO:0000085 - leaf rolling, TO:0000207 - plant height, TO:0000346 - tiller number	
22667	EPF1	OsEPF1	EPIDERMAL PATTERNING FACTOR 1	epidermal patterning factor 1	EPIDERMAL PATTERNING FACTOR 1		4	GO:2000122: negative regulation of stomatal complex development .	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0637300	LOC_Os04g54490.1				GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0010052 - guard cell differentiation, GO:0010374 - stomatal complex development	TO:0000566 - stomatal frequency, TO:0000522 - stomatal conductance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
22668	ALKBH1	OsALKBH1	_	AlkB homolog 1		Osalkbh1, Osalkbh1_1, Osalkbh1_2	3	PDB ID: 5XOI. LOC_Os03g60190. a rice homolog of Escherichia coli AlkB.	 Biochemical character	Os03g0816500	LOC_Os03g60190.2, LOC_Os03g60190.1				GO:0008198 - ferrous iron binding, GO:0051213 - dioxygenase activity, GO:0016491 - oxidoreductase activity, GO:0080111 - DNA demethylation		
22669	SHL1	OsSHL1	SHORT LIFE 1	SHL homolog 1			7	LOC_Os07g08880. an Arabidopsis SHL (SHORT LIFE) homolog. 		Os07g0186400	LOC_Os07g08880.4, LOC_Os07g08880.3, LOC_Os07g08880.2, LOC_Os07g08880.1				GO:0046872 - metal ion binding, GO:0003682 - chromatin binding		
22670	EBL2	OsEBL2	EBS-LIKE 2	EARLY BOLTING IN SHORT DAYS-like 2, EBS-like 2	EBS-LIKE 2		9	LOC_Os09g21770. an Arabidopsis EBS homolog.		Os09g0386500	LOC_Os09g21770.1				GO:0003682 - chromatin binding, GO:0046872 - metal ion binding		
22671	SHL2	OsSHL2	SHORT LIFE 2	SHL homolog 2			7	LOC_Os03g58530. an Arabidopsis SHL (SHORT LIFE) homolog. 		Os03g0799600	LOC_Os03g58530.2, LOC_Os03g58530.1				GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
22672	DUF810.2	OsDUF810.2	DUF810 FAMILY MEMBER 2	domains of unknown function 810.2, DUF810 family member 2	DUF810 FAMILY MEMBER 2		3	LOC_Os03g47930.		Os03g0683700	LOC_Os03g47930.1				GO:0005737 - cytoplasm		
22673	DUF810.3	OsDUF810.3	DUF810 FAMILY MEMBER 3	domains of unknown function 810.3, DUF810 family member 3	DUF810 FAMILY MEMBER 3		4	LOC_Os04g48040.		Os04g0568800	LOC_Os04g48040.1				GO:0005737 - cytoplasm		
22674	DUF810.4	OsDUF810.4	DUF810 FAMILY MEMBER 4	domains of unknown function 810.4, DUF810 family member 4	DUF810 FAMILY MEMBER 4		8	LOC_Os08g30070.		Os08g0390100	LOC_Os08g30070.1				GO:0005759 - mitochondrial matrix		
22675	DUF810.5	OsDUF810.5	DUF810 FAMILY MEMBER 5	domains of unknown function 810.5, DUF810 family member 5	DUF810 FAMILY MEMBER 5		9	LOC_Os09g17760.		Os09g0346700	LOC_Os09g17760.1				GO:0005759 - mitochondrial matrix		
22676	DUF810.6	OsDUF810.6	DUF810 FAMILY MEMBER 6	domains of unknown function 810.6, DUF810 family member 6	DUF810 FAMILY MEMBER 6		10	LOC_Os10g16430.		Os10g0264950	LOC_Os10g16430.1				GO:0042579 - microbody		
22677	DUF810.7	OsDUF810.7	DUF810 FAMILY MEMBER 7	domains of unknown function 810.7, DUF810 family member 7	DUF810 FAMILY MEMBER 7		10	LOC_Os10g33240.	 Tolerance and resistance - Stress tolerance	Os10g0471000	LOC_Os10g33240.1				GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity	
22678	G	OsG	_				3	LOC_Os03g01014. rice ortholog of soybean stay-green gene G (GmG).	 Seed - Physiological traits - Dormancy	Os03g0100030	LOC_Os03g01014.1				GO:0010162 - seed dormancy, GO:0016021 - integral to membrane	TO:0000253 - seed dormancy	
22679	GDPD2	OsGDPD2	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 2	Glycerophosphodiester phosphodiesterase 2	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 2		2	LOC_Os02g31030. Arabidopsis GDPD2 homolog. TO:0020102: phosphate content.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0514500	LOC_Os02g31030.2, LOC_Os02g31030.1				GO:0045017 - glycerolipid biosynthetic process, GO:0008081 - phosphoric diester hydrolase activity, GO:0006629 - lipid metabolic process, GO:0046475 - glycerophospholipid catabolic process, GO:0042594 - response to starvation, GO:0008889 - glycerophosphodiester phosphodiesterase activity	TO:0000602 - total fat content, TO:0000227 - root length, TO:0000143 - relative biomass, TO:0000627 - relative phosphorus utilization efficiency	PO:0009037 - lemma , PO:0009038 - palea , PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem , PO:0009010 - seed , PO:0009066 - anther , PO:0000003 - whole plant 
22680	SUN1	OsSUN1	SUN DOMAIN-CONTAINING PROTEIN 1	SUN (Sad1/UNC-84) domain-containing protein 1, SUN domain-containing protein 1, SUN protein 1	SUN DOMAIN-CONTAINING PROTEIN 1		1	LOC_Os01g16220.	 Tolerance and resistance - Stress tolerance	Os01g0267600	LOC_Os01g16220.1				GO:0009737 - response to abscisic acid stimulus, GO:0006998 - nuclear envelope organization, GO:0005635 - nuclear envelope, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0043495 - protein anchor	TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
22681	SUN3	OsSUN3, OsSUN3.1, OsSUN3.2, OsSUN3.3, OsSUN3.4	SUN DOMAIN-CONTAINING PROTEIN 3	SUN (Sad1/UNC-84) domain-containing protein 3, SUN domain-containing protein 3, SUN protein 3	SUN DOMAIN-CONTAINING PROTEIN 3		1	LOC_Os01g65520.	 Tolerance and resistance - Stress tolerance	Os01g0876400	LOC_Os01g65520.1				GO:0016020 - membrane, GO:0005737 - cytoplasm, GO:0034975 - protein folding in endoplasmic reticulum, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
22682	SUN5	OsSUN5	SUN DOMAIN-CONTAINING PROTEIN 5	SUN (Sad1/UNC-84) domain-containing protein 5, SUN domain-containing protein 5, SUN protein 5	SUN DOMAIN-CONTAINING PROTEIN 5		1	LOC_Os01g41600.	 Tolerance and resistance - Stress tolerance	Os01g0599900	LOC_Os01g41600.1				GO:0034975 - protein folding in endoplasmic reticulum, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	PO:0007616 - flowering stage , PO:0025281 - pollen 
22683	_		_	Harpin-induced 1 domain containing protein			4		 Tolerance and resistance - Disease resistance	Os04g0685300	LOC_Os04g58850.1				GO:0046658 - anchored to plasma membrane, GO:0050832 - defense response to fungus, GO:0009506 - plasmodesma, GO:0016021 - integral to membrane	TO:0000074 - blast disease	
22684	_		_				1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0542000	LOC_Os01g36090.1				GO:0005829 - cytosol, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0005975 - carbohydrate metabolic process, GO:0016853 - isomerase activity	TO:0000074 - blast disease	
22685	_		_				1		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0926300 	LOC_Os01g70170.1				GO:0009809 - lignin biosynthetic process, GO:0046686 - response to cadmium ion, GO:0033587 - shikimate biosynthetic process, GO:0009570 - chloroplast stroma, GO:0005739 - mitochondrion, GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process, GO:0004801 - transaldolase activity, GO:0006098 - pentose-phosphate shunt	TO:0000074 - blast disease	
22686	_		_				2		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0198600  	LOC_Os02g10510.1				GO:0046686 - response to cadmium ion, GO:0050832 - defense response to fungus, GO:0004190 - aspartic-type endopeptidase activity, GO:0031593 - polyubiquitin binding, GO:0005829 - cytosol, GO:0005634 - nucleus	TO:0000074 - blast disease	
22687	_		_				2	Q6K9N6.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0621700 	LOC_Os02g40830.3, LOC_Os02g40830.2, LOC_Os02g40830.1				GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0050832 - defense response to fungus, GO:0006099 - tricarboxylic acid cycle, GO:0004775 - succinate-CoA ligase (ADP-forming) activity, GO:0000287 - magnesium ion binding	TO:0000074 - blast disease	
22688	_		_				3	LOC_Os03g21560.	 Tolerance and resistance - Disease resistance	Os03g0333400 	LOC_Os03g21560.1				GO:0009543 - chloroplast thylakoid lumen, GO:0010207 - photosystem II assembly, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22689	_		_				4		 Tolerance and resistance - Disease resistance	Os04g0435700  	LOC_Os04g35570.3, LOC_Os04g35570.2, LOC_Os04g35570.1				GO:0009881 - photoreceptor activity, GO:0050832 - defense response to fungus, GO:0010224 - response to UV-B, GO:0042803 - protein homodimerization activity	TO:0000074 - blast disease	
22690	_		_	DNA mismatch repair protein			5	GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0274200	LOC_Os05g19270.1				GO:0006301 - postreplication repair, GO:0045128 - negative regulation of reciprocal meiotic recombination, GO:0045910 - negative regulation of DNA recombination, GO:0043570 - maintenance of DNA repeat elements, GO:0006298 - mismatch repair, GO:0030983 - mismatched DNA binding, GO:0051321 - meiotic cell cycle, GO:0005524 - ATP binding, GO:0003684 - damaged DNA binding, GO:0008094 - DNA-dependent ATPase activity, GO:0032300 - mismatch repair complex, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0032302 - MutSbeta complex, GO:0032301 - MutSalpha complex, GO:0006290 - pyrimidine dimer repair		
22691	CDKF2	OsCDKF2	CYCLIN-DEPENDENT KINASE F2	cyclin-dependent kinase F-2	CYCLIN-DEPENDENT KINASE F2		5	GO:0140013: meiotic nuclear division. GO:0035556: intracellular signal transduction.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os10g0157200	LOC_Os10g06930.1				GO:0005737 - cytoplasm, GO:0010468 - regulation of gene expression, GO:0004674 - protein serine/threonine kinase activity, GO:0051321 - meiotic cell cycle, GO:0005524 - ATP binding, GO:0005634 - nucleus		
22692	CDKG1	OsCDKG1	CYCLIN-DEPENDENT KINASG1	cyclin-dependent kinase G-1	CYCLIN-DEPENDENT KINASE G1		5	GO:0140013: meiotic nuclear division. GO:0035556: intracellular signal transduction.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0432000	LOC_Os12g24420.1				GO:0006468 - protein amino acid phosphorylation, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0051321 - meiotic cell cycle		
22693	_	RPS10, OsRPS10, rps10	_	ribosomal protein S10, ribosomal protein small subunit 10	_		3		 Other	Os03g0196800	LOC_Os03g10060.1				GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0009570 - chloroplast stroma, GO:0006412 - translation, GO:0005739 - mitochondrion		
22694	_	RPS16, OsRPS16, rps16	_	ribosomal protein S16, ribosomal protein small subunit 16	_		8		 Other	Os08g0517900	LOC_Os08g40610.1				GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
22695	_	RPS20, OsRPS20, rps20	_	ribosomal protein S20, ribosomal protein small subunit 20	_		1		 Other	Os01g0678600	LOC_Os01g48690.2, LOC_Os01g48690.1				GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0070181 - SSU rRNA binding, GO:0005840 - ribosome, GO:0006412 - translation		
22696	GSE	OsGSE	GREEN SPECIAL EXPRESS				8	LOC_Os08g02210.		Os08g0114100	LOC_Os08g02210.2, LOC_Os08g02210.1				GO:0009507 - chloroplast, GO:0009534 - chloroplast thylakoid, GO:0009941 - chloroplast envelope		PO:0009006 - shoot system , PO:0025034 - leaf 
22697	_		_				1		 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0884200 						TO:0000207 - plant height, TO:0000485 - sterility related trait	
22698	_		_				1		 Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0886000  	LOC_Os01g66280.1				GO:0048573 - photoperiodism, flowering	TO:0000485 - sterility related trait, TO:0000346 - tiller number, TO:0000137 - days to heading	
22699	_		_				10		 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os10g0555200  	LOC_Os10g40650.1				GO:0000967 - rRNA 5'-end processing	TO:0000485 - sterility related trait, TO:0000207 - plant height	
22700	_		_				10		 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os10g0555300   	LOC_Os10g40660.1				GO:0003676 - nucleic acid binding	TO:0000485 - sterility related trait, TO:0000207 - plant height	
22701	_		_				10	TO:0006064: rolled leaf.	 Vegetative organ - Leaf,  Vegetative organ - Culm	Os10g0558850    					GO:0003676 - nucleic acid binding	TO:0000085 - leaf rolling, TO:0000207 - plant height	
22702	_		_				1		 Biochemical character,  Vegetative organ - Leaf	Os01g0883900    	LOC_Os01g66110.2, LOC_Os01g66110.1				GO:0008168 - methyltransferase activity, GO:0016021 - integral to membrane, GO:0005802 - trans-Golgi network, GO:0005768 - endosome	TO:0002681 - leaf curling	
22703	_		_				1		 Character as QTL - Yield and productivity	Os01g0931600     	LOC_Os01g70590.1					TO:0000346 - tiller number	
22704	_		_				2		 Biochemical character,  Vegetative organ - Leaf	Os02g0258900     	LOC_Os02g15870.5, LOC_Os02g15870.4, LOC_Os02g15870.3, LOC_Os02g15870.2, LOC_Os02g15870.1				GO:0019008 - molybdopterin synthase complex, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0003824 - catalytic activity, GO:0046872 - metal ion binding, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process	TO:0000326 - leaf color, TO:0002681 - leaf curling	
22705	_		_				5		 Vegetative organ - Leaf	Os05g0170200      	LOC_Os05g07810.1					TO:0002681 - leaf curling	
22706	_		_				10		 Vegetative organ - Leaf	Os10g0556500       						TO:0002681 - leaf curling, TO:0000326 - leaf color	
22707	_		_				12		 Biochemical character,  Vegetative organ - Leaf	Os12g0103000        	LOC_Os12g01240.1				GO:0000095 - S-adenosylmethionine transmembrane transporter activity, GO:0005743 - mitochondrial inner membrane, GO:0016021 - integral to membrane, GO:0005509 - calcium ion binding, GO:0009941 - chloroplast envelope	TO:0000326 - leaf color	
22708	_		_				12		 Biochemical character,  Vegetative organ - Leaf	Os12g0104400         	LOC_Os12g01370.1				GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, GO:0016021 - integral to membrane, GO:0006629 - lipid metabolic process	TO:0000326 - leaf color	
22709	_		_				12		 Vegetative organ - Leaf	Os12g0104733         					GO:0048366 - leaf development	TO:0000655 - leaf development trait	
22710	DSM1	OsDSM1	DROUGHT-HYPERSENSITIVE MUTANT 1	drought-hypersensitive mutant1		dsm1, dsm1-1, dsm1-2	2	LOC_Os02g50970. A Raf-Like MAPKKK Gene. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os02g0743500	LOC_Os02g50970.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
22711	_		_	Brittle-1			9	LOC_Os09g32200.	 Biochemical character	Os09g0497000	LOC_Os09g32200.1				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity		
22712	_		_	ATP- binding protein			1	LOC_Os01g54420.	 Biochemical character	Os01g0748000	LOC_Os01g54420.1				GO:0008017 - microtubule binding, GO:0016020 - membrane, GO:0005737 - cytoplasm, GO:0005525 - GTP binding, GO:0003924 - GTPase activity		
22713	_		_	cupin domain containing protein, cupin			3	LOC_Os03g10110.	 Seed - Physiological traits - Storage substances	Os03g0197300	LOC_Os03g10110.1				GO:0045735 - nutrient reservoir activity, GO:0016021 - integral to membrane		
22714	_		_	18S rRNA			9	LOC_Os09g00999. Although these RNAs were annotated as expressed proteins in the MSU v.7.0 database, both contained abundant repetitive sequences with significant alignment with 18S and 26S rRNA sequences (Yang et al. 2018).									
22715	_		_	26S rRNA			9	LOC_ Os09g01000. Although these RNAs were annotated as expressed proteins in the MSU v.7.0 database, both contained abundant repetitive sequences with significant alignment with 18S and 26S rRNA sequences (Yang et al. 2018).									
22716	RBPD	OsRBP-D, RBP-D	_	RNA-binding protein RBP-D, RNA-binding protein D			6	LOC_ Os06g37000. GO:1990904: ribonucleoprotein complex.		Os06g0566100	LOC_Os06g37000.2, LOC_Os06g37000.1				GO:0005737 - cytoplasm, GO:0003727 - single-stranded RNA binding, GO:0003730 - mRNA 3'-UTR binding, GO:0003723 - RNA binding		
22717	_		_	RNA-recognition motif (RRM)-containing RNA-binding protein			3	LOC_ Os03g04780. GO:1990904: ribonucleoprotein complex.		Os03g0141300	LOC_Os03g04780.1				GO:0003723 - RNA binding		
22718	LHCA1	OsLhca1, Lhca1	_				6	LOC_Os06g21590.		Os06g0320500	LOC_Os06g21590.2, LOC_Os06g21590.1				GO:0009535 - chloroplast thylakoid membrane, GO:0009768 - photosynthesis, light harvesting in photosystem I, GO:0018298 - protein-chromophore linkage, GO:0009416 - response to light stimulus, GO:0009941 - chloroplast envelope, GO:0010287 - plastoglobule, GO:0016021 - integral to membrane, GO:0009522 - photosystem I, GO:0009523 - photosystem II, GO:0016168 - chlorophyll binding		
22719	RBP10	OsRBP10, RBP-10, OsRBP-10	RNA-BINDING PROTEIN 10	RNA-Binding Protein 10	RNA-BINDING PROTEIN 10		11	LOC_Os11g43890. a WD domain, a G-beta repeat domain-containing protein.		Os11g0660300	LOC_Os11g43890.1						
22720	RBP213	OsRBP213, RBP-213, OsRBP-213	RNA-BINDING PROTEIN 213	RNA-Binding Protein 213	RNA-BINDING PROTEIN 213		1	LOC_Os01g12840.		Os01g0228800	LOC_Os01g12840.1						
22721	_		_	PPR repeat domain-containing protein			1	LOC_Os01g05860.		Os01g0151900	LOC_Os01g05860.1				GO:0022626 - cytosolic ribosome		
22722	_		_	ATPase			8	LOC_Os08g40555.									
22723	_		_	ribosomal protein			1	LOC_Os01g70010.		Os01g0924800	LOC_Os01g70010.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0042254 - ribosome biogenesis, GO:0005840 - ribosome, GO:0003723 - RNA binding, GO:0000470 - maturation of LSU-rRNA		
22724	_		_	glycine-rich cell wall protein			1	LOC_Os01g57250.		Os01g0780900	LOC_Os01g57250.1						
22725	_		_	glutelin			2	LOC_Os02g25860.		Os02g0456100	LOC_Os02g25860.1				GO:0045735 - nutrient reservoir activity		
22726	NHL25	OsNHL25	_	NDR1/HIN1-1ike gene 25			1	LOC_Os01g59680.		Os01g0812100	LOC_Os01g59680.1				GO:0016021 - integral to membrane		
22727	_		_	defensin family protein			11	LOC_Os11g45360..									
22728	_		_	defensin family protein			12	LOC_Os12g12230.		Os12g0223700	LOC_Os12g12230.1						
22729	SPP1	OsSPP1	SIGNAL PEPTIDE PEPTIDASE 1	signal peptide peptidase 1	SIGNAL PEPTIDE PEPTIDASE 1		2	LOC_Os02g02530. Q6ZGL9. GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane. GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane.	 Biochemical character	Os02g0117400	LOC_Os02g02530.3, LOC_Os02g02530.2, LOC_Os02g02530.1				GO:0033619 - membrane protein proteolysis, GO:0042500 - aspartic endopeptidase activity, intramembrane cleaving, GO:0005783 - endoplasmic reticulum, GO:0006465 - signal peptide processing		
22730	SPP2	OsSPP2	SIGNAL PEPTIDE PEPTIDASE 2	signal peptide peptidase 2	SIGNAL PEPTIDE PEPTIDASE 2		5	LOC_Os05g36070. B9FJ61. GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane. GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane.	 Biochemical character	Os05g0436400	LOC_Os05g36070.3, LOC_Os05g36070.2, LOC_Os05g36070.1				GO:0005783 - endoplasmic reticulum, GO:0042500 - aspartic endopeptidase activity, intramembrane cleaving, GO:0006465 - signal peptide processing, GO:0033619 - membrane protein proteolysis		
22731	SRP32	Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32	SERINE/ARGININE-RICH PROTEIN 32	Serine/Arginine-Rich Protein Splicing Factor 32, Serine/Arginine-Rich Protein 32, SR Protein 32, SR subfamily protein 32	SERINE/ARGININE-RICH PROTEIN 32		3	LOC_Os03g22380.	 Tolerance and resistance - Stress tolerance	Os03g0344100	LOC_Os03g22380.3, LOC_Os03g22380.2, LOC_Os03g22380.1				GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0042594 - response to starvation		
22732	SRP33A	Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a	SERINE/ARGININE-RICH PROTEIN 33A	Serine/Arginine-Rich Protein Splicing Factor 33a, Serine/Arginine-Rich Protein 33a, SR Protein 33a, SR subfamily protein 33a	SERINE/ARGININE-RICH PROTEIN 33A		5	LOC_Os05g30140.	 Tolerance and resistance - Stress tolerance	Os05g0364600	LOC_Os05g30140.2, LOC_Os05g30140.1				GO:0042594 - response to starvation, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0045292 - nuclear mRNA cis splicing, via spliceosome		
22733	SRP33B	Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b	SERINE/ARGININE-RICH PROTEIN 33B	Serine/Arginine-Rich Protein Splicing Factor 33b, Serine/Arginine-Rich Protein 33b, SR Protein 33b, SR subfamily protein 33b	SERINE/ARGININE-RICH PROTEIN 33B	sr33	7	LOC_Os07g47630. Os-SR33 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0673500	LOC_Os07g47630.8, LOC_Os07g47630.7, LOC_Os07g47630.6, LOC_Os07g47630.4, LOC_Os07g47630.3, LOC_Os07g47630.2, LOC_Os07g47630.1				GO:0055062 - phosphate ion homeostasis, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0042594 - response to starvation, GO:0016607 - nuclear speck, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22734	SRP20	Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20	SERINE/ARGININE-RICH PROTEIN 20	Serine/Arginine-Rich Protein Splicing Factor 20, Serine/Arginine-Rich Protein 20, SR Protein 20, SR subfamily protein 20	SERINE/ARGININE-RICH PROTEIN 20	sr40	1	LOC_Os01g21420. Os-SR40 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os01g0316550	LOC_Os01g21420.1				GO:0055062 - phosphate ion homeostasis, GO:0042594 - response to starvation		
22735	RSZP21A	Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a	_	RS domain with zinc knuckle protein 21A, RSZ subfamily protein 21A	_	rsz21a	6	LOC_Os06g08840. Q69KL9. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os06g0187900	LOC_Os06g08840.8, LOC_Os06g08840.7, LOC_Os06g08840.6, LOC_Os06g08840.5, LOC_Os06g08840.4, LOC_Os06g08840.3, LOC_Os06g08840.2, LOC_Os06g08840.1				GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck, GO:0008270 - zinc ion binding, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22736	RSZP21B	Os-RSZ21, OsRSZ21, RSZ21, Os-RSZp21b, OsRSZp21b	_	RS domain with zinc knuckle protein 21B, RSZ subfamily protein 21B	_		2	LOC_Os02g54770. Q6K4N0. Os-RSZ21 in Barta et al. 2010, Dong et al. 2018.	 Tolerance and resistance - Stress tolerance	Os02g0789400	LOC_Os02g54770.2, LOC_Os02g54770.1				GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0042594 - response to starvation, GO:0008270 - zinc ion binding, GO:0005634 - nucleus		
22737	RSZP23	Os-RSZ23, OsRSZ23, Os-RSZp23, OsRSZp23	_	RS domain with zinc knuckle protein 23, RSZ subfamily protein 23	_		2	LOC_Os02g39720. Q6K9C3.		Os02g0610600	LOC_Os02g39720.6, LOC_Os02g39720.4, LOC_Os02g39720.3, LOC_Os02g39720.2				GO:0005634 - nucleus, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck, GO:0008270 - zinc ion binding		
22738	SC35A	Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a	_	SC subfamily protein 35a	_		6	LOC_Os08g37960. Os-SC34 in Barta et al. 2010, Dong et al. 2018.	 Tolerance and resistance - Stress tolerance	Os08g0486200	LOC_Os08g37960.3, LOC_Os08g37960.2, LOC_Os08g37960.1				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck, GO:0005737 - cytoplasm, GO:0042594 - response to starvation, GO:0005634 - nucleus		
22739	SC35B	OsSC32, Os-SC32, SC32, OsSC35b, Os-SC35b	_	SC subfamily protein 35b	_		7	LOC_Os07g43050. Os-SC32 in Barta et al. 2010, Dong et al. 2018.	 Tolerance and resistance - Stress tolerance	Os07g0623300	LOC_Os07g43050.3, LOC_Os07g43050.2, LOC_Os07g43050.1				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005737 - cytoplasm, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome		
22740	SC35C	Os-SC25, OsSC25, Os-SC35c, OsSC35c	_	SC subfamily protein 35c	_		3	LOC_Os03g27030. Os-SC25 in Barta et al. 2010.		Os03g0388000	LOC_Os03g27030.3, LOC_Os03g27030.2, LOC_Os03g27030.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22741	SCL25	Os-SCL25, OsSCL25	SC35-LIKE PROTEIN 25	SC35-like protein 25, SCL subfamily protein 25	SC35-LIKE PROTEIN 25	scl25, scl25-1	7	LOC_Os07g43950. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0633200	LOC_Os07g43950.1				GO:0016607 - nuclear speck, GO:0005634 - nucleus, GO:0042594 - response to starvation, GO:0000395 - nuclear mRNA 5'-splice site recognition, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22742	SCL26	Os-SCL26, OsSCL26	SC35-LIKE PROTEIN 26	SC35-like protein 26, SCL subfamily protein 26	SC35-LIKE PROTEIN 26	scl26	3	LOC_Os03g25770. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os03g0374575	LOC_Os03g25770.2, LOC_Os03g25770.1				GO:0000395 - nuclear mRNA 5'-splice site recognition, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck		
22743	SCL30A	Os-SCL30a, OsSCL30a, SCL30a	SC35-LIKE PROTEIN 30A	SC35-like protein 30a, SCL subfamily protein 30a	SC35-LIKE PROTEIN 30A		2	LOC_Os02g15310.	 Tolerance and resistance - Stress tolerance	Os02g0252100	LOC_Os02g15310.4, LOC_Os02g15310.3, LOC_Os02g15310.2, LOC_Os02g15310.1				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck, GO:0042594 - response to starvation, GO:0005634 - nucleus		
22744	SCL28	Os-SCL28, OsSCL28	SC35-LIKE PROTEIN 28	SC35-like protein 28, SCL subfamily protein 28	SC35-LIKE PROTEIN 28		3	LOC_Os03g24890.		Os03g0363800	LOC_Os03g24890.2, LOC_Os03g24890.1				GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0016607 - nuclear speck, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus		
22745	SCL57	Os-SCL57, OsSCL57	SC35-LIKE PROTEIN 57	SC35-like protein 57, SCL subfamily protein 57	SC35-LIKE PROTEIN 57	scl57	11	LOC_Os11g47830. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os11g0704700	LOC_Os11g47830.2, LOC_Os11g47830.1				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0005634 - nucleus, GO:0016607 - nuclear speck, GO:0055062 - phosphate ion homeostasis, GO:0042594 - response to starvation		
22746	RSZP36	Os-RS2Z36, OsRS2Z36, Os-RSZ36, OsRSZ36, RSZ36	_	RS domain with zinc knuckle protein 36, RSZ subfamily protein 36, RS2Z subfamily protein 36	_	rs2z36	5	LOC_Os05g02880. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os05g0120100	LOC_Os05g02880.1				GO:0016607 - nuclear speck, GO:0055062 - phosphate ion homeostasis, GO:0003729 - mRNA binding, GO:0008270 - zinc ion binding, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding		
22747	RSZP37A	Os-RS2Z37, OsRS2Z37, RS2Z37, Os-RSZ37a, OsRSZ37a	_	RS domain with zinc knuckle protein 37a, RSZ subfamily protein 37a, RS2Z subfamily protein 37	_		1	LOC_Os01g06290. Os-RS2Z37 in Barta et al. 2010, Dong et al. 2018.	 Tolerance and resistance - Stress tolerance	Os01g0155600	LOC_Os01g06290.4, LOC_Os01g06290.3, LOC_Os01g06290.2, LOC_Os01g06290.1				GO:0008270 - zinc ion binding, GO:0003729 - mRNA binding, GO:0042594 - response to starvation, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus		
22748	RSZP37B	Os-RS2Z38, OsRS2Z38, Os-RSZ37b, OsRSZ37b	_	RS domain with zinc knuckle protein 37b, RSZ subfamily protein 37b, RS2Z subfamily protein 38	_	rs2z38	3	LOC_Os03g17710. Os-RS2Z38 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os03g0285900	LOC_Os03g17710.2, LOC_Os03g17710.1				GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0055062 - phosphate ion homeostasis, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0042594 - response to starvation, GO:0003729 - mRNA binding, GO:0008270 - zinc ion binding		
22749	RSZP39	Os-RS2Z39, OsRS2Z39, Os-RSZ39, OsRSZ39	_	RS domain with zinc knuckle protein 39, RSZ subfamily protein 39, RS2Z subfamily protein 39	_		5	LOC_Os05g07000. 		Os05g0162600	LOC_Os05g07000.1				GO:0003729 - mRNA binding, GO:0008270 - zinc ion binding, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus		
22750	RSP29	OsRS29, Os-RS29, OsRSp29, Os-RSp29	RS domain protein 29	RS domain protein 29, RS subfamily protein 29	RS domain protein 29	rs29	4	LOC_Os04g02870. TO:0020091: manganese content.		Os04g0118900	LOC_Os04g02870.4, LOC_Os04g02870.3, LOC_Os04g02870.2, LOC_Os04g02870.1				GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck, GO:0005681 - spliceosomal complex		
22751	RSP33	OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2	RS domain protein 33	RS domain protein 33, RS subfamily protein 33	RS domain protein 33	rs33	2	LOC_Os02g03040. TO:0006053: zinc concentration.GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os02g0122800	LOC_Os02g03040.4, LOC_Os02g03040.3, LOC_Os02g03040.2, LOC_Os02g03040.1				GO:0005634 - nucleus, GO:0006829 - zinc ion transport, GO:0003723 - RNA binding, GO:0005681 - spliceosomal complex, GO:0016607 - nuclear speck, GO:0042594 - response to starvation, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22752	_		_	leucine-rich repeat (LRR)-containing protein			1		 Tolerance and resistance - Stress tolerance	Os01g0162300					GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance	
22753	_		_	leucine-rich repeat (LRR)-containing protein			1		 Tolerance and resistance - Stress tolerance	Os02g0138000					GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22754	_		_	leucine-rich repeat (LRR)-containing protein			1		 Tolerance and resistance - Stress tolerance	Os05g0406800					GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22755	_		_	leucine-rich repeat (LRR)-containing protein			1		 Tolerance and resistance - Stress tolerance	Os03g0637600					GO:0016301 - kinase activity, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22756	_		_				10		 Tolerance and resistance - Stress tolerance	Os10g0343100					GO:0048193 - Golgi vesicle transport, GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance	
22757	_		_				2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0739400					GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009409 - response to cold, GO:0005794 - Golgi apparatus	TO:0000303 - cold tolerance	
22758	_		_				9		 Tolerance and resistance - Stress tolerance	Os09g0482680					GO:0009409 - response to cold, GO:0042781 - 3'-tRNA processing endoribonuclease activity	TO:0000303 - cold tolerance	
22759	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0191900					GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22760	_		_				3		 Tolerance and resistance - Stress tolerance	Os03g0411300					GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22761	_		_	MYB transcription factor			7	LOC_Os07g30130. GO:0044212: transcription regulatory region DNA binding. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance	Os07g0484700					GO:0010039 - response to iron ion, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0030154 - cell differentiation	TO:0000224 - iron sensitivity	
22762	_		_				8	LOC_Os08g41460. LOC_Os08g41460 is highly homologous to Ob08g19210 (O. brachyantha) and the pseudogene sequence in Cen8 region. In the cases within the rice Cen8 region, two genes (homologs of O. brachyantha Ob08g19210 and Ob08g19230) were lost, while remnants of homolog of Ob08g19210 were observed in the corresponding syntenic region of O. sativa Cen8. Its orthologous gene is syntenically conserved at the Cen8 region in O. brachyantha (Ob08g19210), O. punctata (Opunc08g09410), and L. perrieri. Os08g41460 may be the derived copy (acceptor) which  appears to have originated from an insertion event by the double-strand break repair through nonhomologous ending joining (Liao et al. 2018).		Os08g0526300					GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0016730 - oxidoreductase activity, acting on iron-sulfur proteins as donors, GO:0009773 - photosynthetic electron transport in photosystem I		
22763	_		_	PEBP family protein, PhosphatidylEthanolamine-Binding Protein			1			Os01g0748800							
22764	_		_	BTB domain containing protein			9	GO:0060918: auxin transport. GO:0099402: plant organ development.		Os09g0420900							
22765	_		_				3			Os03g0639400					GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
22766	_		_				7		 Biochemical character	Os07g0240200					GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0046658 - anchored to plasma membrane		
22767	_		_				3		 Biochemical character	Os03g0626700					GO:0042910 - xenobiotic transporter activity, GO:0016021 - integral to membrane, GO:0006855 - multidrug transport, GO:0015297 - antiporter activity		
22768	_		_				4			Os04g0685400					GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane		
22769	_		_				12			Os12g0630500							
22770	ACOT 	OsACOT	ACYL-COA THIOESTERASE	Acyl-CoA thioesterase	ACYL-COA THIOESTERASE		4	miR1432 target gene. LOC_Os04g35590. TO:0020106: Indole-3-acetic acid content.	 Biochemical character,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os04g0436100					GO:0019217 - regulation of fatty acid metabolic process, GO:0005777 - peroxisome, GO:0047617 - acyl-CoA hydrolase activity	TO:0002672 - auxin content, TO:0002667 - abscisic acid content, TO:0000304 - seed thickness, TO:0000149 - seed width, TO:0000734 - grain length, TO:0000592 - 1000-dehulled grain weight, TO:0000396 - grain yield	PO:0009005 - root , PO:0009010 - seed 
22771	_	OsTAA1, TAA1, OsTAA1;4, TAA1;4	_				1		 Biochemical character	Os01g0717700					GO:0016846 - carbon-sulfur lyase activity, GO:0016021 - integral to membrane		
22772	_	OsABA4, ABA4	_				1	Q5ZEG0.		Os01g0128300					GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane, GO:0009688 - abscisic acid biosynthetic process, GO:0016123 - xanthophyll biosynthetic process, GO:0031969 - chloroplast membrane		
22773	_	OsADT, ADT	_	arogenate dehydratase			4		 Biochemical character	Os04g0406600					GO:0009570 - chloroplast stroma, GO:0047769 - arogenate dehydratase activity, GO:0004664 - prephenate dehydratase activity, GO:0009094 - L-phenylalanine biosynthetic process, GO:0009507 - chloroplast		
22774	PPAAT	OsPPA-AT, PPA-AT	PREPHENATE AMINOTRANSFERASE	prephenate aminotransferase	PREPHENATE AMINOTRANSFERASE		1		 Biochemical character	Os01g0871300 					GO:0009793 - embryonic development ending in seed dormancy, GO:0030170 - pyridoxal phosphate binding, GO:0033854 - glutamate-prephenate aminotransferase activity, GO:0033853 - aspartate-prephenate aminotransferase activity, GO:0009570 - chloroplast stroma, GO:0009095 - aromatic amino acid family biosynthetic process, prephenate pathway, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity		
22775	_	5C700	_				5	a homolog of OsLEA5. 5C subgroup of LEAs.		Os05g0526700					GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
22776	_	5C300	_				5	a homolog of OsLEA5. 5C subgroup of LEAs.		Os05g0584300 					GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane	TO:0000615 - abscisic acid sensitivity	
22777	PRN	OsPRN	PIRIN	OsPIRIN, pirin-like protein	PIRIN		3	LOC_Os03g62790.		Os03g0845000					GO:0009507 - chloroplast		
22778	GRAS46	OsGRAS44, OsGRAS-44, GRAS-44, GRAS44, OsGRAS-46, OsGRAS46, GRAS-46	GRAS PROTEIN 46	GRAS family transcription factor domain-containing protein 44, GRAS protein 46	GRAS PROTEIN 46		11	LOC_Os11g47870. OsGRAS44 in Park et al. 2018.		Os11g0705200					GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
22779	GRAS2	OsGRAS-2, OsGRAS2, GRAS-2	GRAS PROTEIN 2	GRAS protein 2	GRAS PROTEIN 2		1			Os01g0842200					GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
22780	GRAS4	OsGRAS-4, OsGRAS4, GRAS-4	GRAS PROTEIN 4	GRAS protein 4	GRAS PROTEIN 4		1	LOC_Os01g67650.									
22781	GRAS5	OsGRAS-5, OsGRAS5, GRAS-5	GRAS PROTEIN 5	GRAS protein 5	GRAS PROTEIN 5		1	LOC_Os01g67670.									
22782	GRAS6	OsGRAS-6, OsGRAS6, GRAS-6	GRAS PROTEIN 6	GRAS protein 6	GRAS PROTEIN 6		1			Os01g0948200					GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0003712 - transcription cofactor activity, GO:0005634 - nucleus		
22783	GRAS7	OsGRAS-7, OsGRAS7, GRAS-7	GRAS PROTEIN 7	GRAS protein 7	GRAS PROTEIN 7		2			Os02g0197300	LOC_Os02g10360.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0010014 - meristem initiation		
22784	GRAS10	OsGRAS-10, OsGRAS10, GRAS-10	GRAS PROTEIN 10	GRAS protein 10	GRAS PROTEIN 10		2	BI799129.		Os02g0681900	LOC_Os02g45760.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22785	GRAS11	OsGRAS-11, OsGRAS11, GRAS-11	GRAS PROTEIN 11	GRAS protein 11	GRAS PROTEIN 11		3	OsGRAS-11 appears to encode a functional copy in indica, but a putative pseudo-gene in japonica.									
22786	GRAS12	OsGRAS-12, OsGRAS12, GRAS-12	GRAS PROTEIN 12	GRAS protein 12	GRAS PROTEIN 12		3			Os03g0193000					GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
22788	GRAS20	OsGRAS-20, OsGRAS20, GRAS-20	GRAS PROTEIN 20	GRAS protein 20	GRAS PROTEIN 20		4			Os04g0432100					GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22789	GRAS22	OsGRAS-22, OsGRAS22, GRAS-22	GRAS PROTEIN 22	GRAS protein 22	GRAS PROTEIN 22		4			Os04g0580300					GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
22790	GRAS24	OsGRAS-24, OsGRAS24, GRAS-24	GRAS PROTEIN 24	GRAS protein 24	GRAS PROTEIN 24		5										
22791	GRAS25	OsGRAS-25, OsGRAS25, GRAS-25	GRAS PROTEIN 25	GRAS protein 25	GRAS PROTEIN 25		5										
22792	GRAS26	OsGRAS-26, OsGRAS26, GRAS-26	GRAS PROTEIN 26	GRAS protein 26	GRAS PROTEIN 26		5			Os05g0378200	LOC_Os05g31380.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22793	GRAS27	OsGRAS-27, OsGRAS27, GRAS-27	GRAS PROTEIN 27	GRAS protein 27	GRAS PROTEIN 27		5			Os05g0378500					GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003712 - transcription cofactor activity		
22794	GRAS28	OsGRAS-28, OsGRAS28, GRAS-28	GRAS PROTEIN 28	GRAS protein 28	GRAS PROTEIN 28		5			Os05g0485400					GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22795	GRAS29	OsGRAS-29, OsGRAS29, GRAS-29	GRAS PROTEIN 29	GRAS protein 29	GRAS PROTEIN 29		5			Os05g0500600					GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22796	GRAS35	OsGRAS-35, OsGRAS35, GRAS-35	GRAS PROTEIN 35	GRAS protein 35	GRAS PROTEIN 35		7	GO:0090610: bundle sheath cell fate specification.		Os07g0567700					GO:0003700 - transcription factor activity, GO:0048366 - leaf development, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22797	GRAS37	OsGRAS-37, OsGRAS37, GRAS-37	GRAS PROTEIN 37	GRAS protein 37	GRAS PROTEIN 37		7			Os07g0589200	LOC_Os07g40020.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22798	GRAS42	OsGRAS-42, OsGRAS42, GRAS-42	GRAS PROTEIN 42	GRAS protein 42	GRAS PROTEIN 42		11	D23637.		Os11g0139600					GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
22799	GRAS43	OsGRAS-43, OsGRAS43, GRAS-43	GRAS PROTEIN 43	GRAS protein 43	GRAS PROTEIN 43		11			Os11g0141550					GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22800	GRAS44	OsGRAS-44, OsGRAS44, GRAS-44	GRAS PROTEIN 44	GRAS protein 44	GRAS PROTEIN 44		11			Os11g0141700					GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
22801	GRAS48	OsGRAS-48, OsGRAS48, GRAS-48	GRAS PROTEIN 48	GRAS protein 48	GRAS PROTEIN 48		11			Os11g0705900					GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
22802	GRAS49	OsGRAS-49, OsGRAS49, GRAS-49	GRAS PROTEIN 49	GRAS protein 49	GRAS PROTEIN 49		11	LOC_Os11g47910.									
22803	GRAS50	OsGRAS-50, OsGRAS50, GRAS-50	GRAS PROTEIN 50	GRAS protein 50	GRAS PROTEIN 50		11			Os11g0706200					GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22804	GRAS53	OsGRAS-53, OsGRAS53, GRAS-53	GRAS PROTEIN 53	GRAS protein 53	GRAS PROTEIN 53		12	LOC_Os12g04370.		Os12g0138100/Os12g0138166					GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
22805	GRAS54	OsGRAS-54, OsGRAS54, GRAS-54	GRAS PROTEIN 54	GRAS protein 54	GRAS PROTEIN 54		12			Os12g0138200					GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22806	GRAS55	OsGRAS-55, OsGRAS55, GRAS-55	GRAS PROTEIN 55	GRAS protein 55	GRAS PROTEIN 55		12			Os12g0162700							
22807	GRAS56	OsGRAS-56, OsGRAS56, GRAS-56	GRAS PROTEIN 56	GRAS protein 56	GRAS PROTEIN 56		12	CA999102.		Os12g0573200							
22809	GRAS31	OsGRAS-31, OsGRAS31, GRAS-31	GRAS PROTEIN 31	GRAS protein 31	GRAS PROTEIN 31		5			Os06g0105350					GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
22810	GRAS39	OsGRAS-39, OsGRAS39, GRAS-39	GRAS PROTEIN 39	GRAS protein 39	GRAS PROTEIN 39		10	CB211621 (Oryza minuta cDNA).		Os10g0369600					GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22811	GRAS40	OsGRAS-40, OsGRAS40, GRAS-40	GRAS PROTEIN 40	GRAS protein 40	GRAS PROTEIN 40		10	AU183195.		Os10g0551200					GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22812	GRAS45	OsGRAS-45, OsGRAS45, GRAS-45	GRAS PROTEIN 45	GRAS protein 45	GRAS PROTEIN 45		11	CA762305. LOC_Os11g06180.		Os11g0160550/Os11g0160600					GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22813	GRAS47	OsGRAS-47, OsGRAS47, GRAS-47	GRAS PROTEIN 47	GRAS protein 47	GRAS PROTEIN 47		11	CA756197. LOC_Os11g47890.									
22814	GRAS52	OsGRAS-52, OsGRAS52, GRAS-52	GRAS PROTEIN 52	GRAS protein 52	GRAS PROTEIN 52		12	LOC_Os12g04200. D23637.									
22815	GRAS57	OsGRAS-57, OsGRAS57, GRAS-57	GRAS PROTEIN 57	GRAS protein 57	GRAS PROTEIN 57			One putative gene (OsGRAS-57) was not detected in japonica (Tian et al. 2004).									
22816	SAC1	OsSAC1	SUGAR ACCUMULATION 1	sugar accumulation 1		ossac1	7	LOC_Os07G02520. GO:0061458: reproductive system development. GO:0080186: developmental vegetative growth.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os07g0116300					GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane	TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000696 - starch content, TO:0000328 - sucrose content, TO:0000300 - glucose content, TO:0000495 - chlorophyll content, TO:0001015 - photosynthetic rate, TO:0000339 - stem thickness, TO:0000576 - stem length, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000333 - sugar content, TO:0000592 - 1000-dehulled grain weight, TO:0000040 - panicle length, TO:0000180 - spikelet fertility	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22817	_	Cyt b6, OsCytb6, Cytb6	_	Cytochrome b6			1	homologous to ATCG00720 (PETB).			LOC_Os01g57942.1						
22818	_		_	photosynthetic reaction center protein			8	homologous to ATCG00020 (PSBA).			LOC_Os08g35420.1						
22820	_	OsSTA171	_				6	a mature anther-preferentially expressed gene. LOC_Os06g08680.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0186000	LOC_Os06g08680.1						PO:0009066 - anther 
22821	UGT93B	OsUGT93B	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 93B	UDP-glucose-dependent glycosyltransferase 93B	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 93B		4		 Biochemical character	Os04g0556400	LOC_Os04g46970.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008194 - UDP-glycosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups		
22822	_	pro13b.10	_				5	13 kDa prolamin.	 Seed - Physiological traits - Storage substances	Os05g0329001 					GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
22823	ESP	OsESP	EPIGENETIC SHORT PANICLE	Epigenetic Short Panicle		Epi-sp	1	Epi-sp is a gain-of-function epiallele of the rice ESP (long noncoding RNA). TO:0000847: panicle inflorescence morphology trait.	 Reproductive organ - panicle	Os01g0356951						TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000040 - panicle length	
22824	LG1	OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1	LARGE GRAIN 1	large grain1, large grain 1, ubiquitin-specific protease15, ubiquitin-specific processing protease 7-1	UBIQUITIN-SPECIFIC PROTEASE 15	Osubp15, lg1-D, lg1-1, lg1-2		TO:0000975: grain width. OsUBP7-1 in Wnag et al. 2018. OsUBP15 in Shi et al. 2019, Ma et al. 2019.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os02g0244300	LOC_Os02g14730.1				GO:0008285 - negative regulation of cell proliferation	TO:0000592 - 1000-dehulled grain weight, TO:0000149 - seed width, TO:0000396 - grain yield, TO:0000397 - grain size	PO:0009029 - stamen 
22825	DA1	OsDA1	_				6	"a homolog of Arabidopsis DA1 (ubiquitin receptor, DA means \"large\" in Chinese)."		Os06g0182500	LOC_Os06g08400.2, LOC_Os06g08400.1				GO:0043130 - ubiquitin binding, GO:0046872 - metal ion binding		
22826	NCA1B	OsNCA1b, NCA1b	NO CATALASE ACTIVITY 1B			nca1b	2	nca1a/nca1b double mutant displayed obvious lesion and even albino symptoms on leaves throughout the growth stages (Liu et al. 2019).	 Vegetative organ - Leaf	Os02g0795300	LOC_Os02g55200.2, LOC_Os02g55200.1					TO:0000326 - leaf color	PO:0025034 - leaf 
22827	WLS5	OsWLS5	WEAKNESS AND LEAF SENESCENCE 5	weakness and leaf senescence5		wls5	5	TO:0000892: stem size. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os05g0141050	LOC_Os05g04900.1				GO:0008283 - cell proliferation, GO:0009826 - unidimensional cell growth, GO:0009738 - abscisic acid mediated signaling, GO:0009658 - chloroplast organization, GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence	TO:0000447 - filled grain number, TO:0000249 - leaf senescence, TO:0000605 - hydrogen peroxide content, TO:0002715 - chloroplast development trait, TO:0000371 - yield trait, TO:0000495 - chlorophyll content, TO:0000566 - stomatal frequency, TO:0002667 - abscisic acid content, TO:0002668 - jasmonic acid content, TO:0002675 - gibberellic acid content, TO:0000207 - plant height, TO:0000040 - panicle length	PO:0001054 - 4 leaf senescence stage 
22828	PIDB	OsPIDb, PIDb	PINOID B	PINOID b			3	the closest homolog of OsPID.		Os03g0642300	LOC_Os03g44020.1				GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
22829	PIDL1 	OsPIDL1	PINOID-LIKE 1	PINOID-like 1			11	OsPID homolog.		Os11g0150700	LOC_Os11g05320.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm		
22830	WAG 	OsWAG	WAVY ROOT GROWTH 1	WAVY ROOT GROWTH1			3	OsPID homolog.		Os03g0253200					GO:0004672 - protein kinase activity, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
22831	NPY2 	OsNPY2	NAKED PINS IN YUC MUTANT 2			osnpy2, osnpy2-c1, osnpy2-c2	3		 Reproductive organ - Spikelet, flower, glume, awn	Os06g0184500	LOC_Os06g08550.1				GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0004672 - protein kinase activity	TO:0000346 - tiller number	
22832	LR10	OsLR10	_	resistance protein LR10			4		 Tolerance and resistance - Insect resistance	Os04g0193950	LOC_Os04g11780.1				GO:0002213 - defense response to insect, GO:0043531 - ADP binding	TO:0000424 - brown planthopper resistance	
22833	VWR	OsVWR	VERTICILLIUM WILT RESISTANCE	Verticillium wilt resistance, Verticillium wilt resistance protein			4		 Tolerance and resistance - Insect resistance	Os04g0349700	LOC_Os04g28210.1				GO:0002213 - defense response to insect, GO:0016021 - integral to membrane	TO:0000424 - brown planthopper resistance	
22834	TRFL1	OsTRFL1	TELOMERE REPEAT-BINDING FACTOR LIKE 1	telomere repeat-binding factor like 1	TELOMERE REPEAT-BINDING FACTOR LIKE 1	ostrfl1	2	GO:0090567: reproductive shoot system development. GO:0080186: developmental vegetative growth. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Sterility	Os02g0776700	LOC_Os02g53670.4, LOC_Os02g53670.3, LOC_Os02g53670.2, LOC_Os02g53670.1				GO:0032502 - developmental process, GO:0000723 - telomere maintenance, GO:0003677 - DNA binding	TO:0000485 - sterility related trait	PO:0005052 - plant callus , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009010 - seed 
22835	GDCP	OsGDCP	GLYCINE DECARBOXYLASE P	Glycine decarboxylase P subunit, glycine decarboxylase P	GLYCINE DECARBOXYLASE P		6		 Biochemical character	Os06g0611900	LOC_Os06g40940.3, LOC_Os06g40940.2, LOC_Os06g40940.1				GO:0005739 - mitochondrion, GO:0006546 - glycine catabolic process, GO:0004375 - glycine dehydrogenase (decarboxylating) activity		
22836	DCM1	OsDCM1	DEFECTIVE CALLOSE IN MEIOSIS 1	defective callose in meiosis 1		dcm1	6		 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os06g0638000	LOC_Os06g43120.2, LOC_Os06g43120.1				GO:0009555 - pollen development, GO:0051294 - establishment of spindle orientation, GO:0010584 - pollen exine formation, GO:0052545 - callose localization, GO:0007112 - male meiosis cytokinesis, GO:0005634 - nucleus, GO:0046872 - metal ion binding	TO:0000053 - pollen sterility, TO:0000180 - spikelet fertility	
22837	PABN1	OsPABN1	POLY (A) BINDING PROTEIN 1	poly (A) binding protein 1	POLY (A) BINDING PROTEIN 1		2			Os02g0757900	LOC_Os02g52140.2, LOC_Os02g52140.1				GO:0016607 - nuclear speck, GO:0003723 - RNA binding		
22838	PABN2	OsPABN2	POLY (A) BINDING PROTEIN 2	poly (A) binding protein 2	POLY (A) BINDING PROTEIN 2		6			Os06g0219600	LOC_Os06g11620.1				GO:0016607 - nuclear speck, GO:0003723 - RNA binding		
22839	_	OsA6	_	O-Glycosyl hydrolases family 17 protein			9		 Biochemical character	Os09g0502200	LOC_Os09g32550.2, LOC_Os09g32550.1				GO:0046658 - anchored to plasma membrane, GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
22840	SPK1	OsSPK1	SPIKE 1				3	LOC4332718 (XM_015775852.2). a DOCK family guanine nucleotide exchange factor.	 Tolerance and resistance - Disease resistance								
22841	PKIWI	OsPKIWI, PKIWI502	_				2	a homolog of the Arabidopsis FNRL protein (AT1G15140). A fruit protein.	 Biochemical character	Os02g0328300 					GO:0016491 - oxidoreductase activity		
22842	_	SPL24	_	spotted leaf 24, spotted-leaf 24		spl24	11	OsSPL24 was in a 110 kb region flanked by markers Indel-33 and Indel-12 in chromosome 11. 9 candidate genes: LOC_Os11g34460, LOC_Os11g34470, LOC_Os11g34570, LOC_Os11g34580, LOC_Os11g34610, LOC_Os11g34624, LOC_Os11g34640, LOC_Os11g34650, LOC_Os11g34660. (Chen et al. 2018).	 Vegetative organ - Culm,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic,  Character as QTL - Yield and productivity						GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0012501 - programmed cell death, GO:0010150 - leaf senescence, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0002667 - abscisic acid content, TO:0002668 - jasmonic acid content, TO:0000180 - spikelet fertility, TO:0000346 - tiller number, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000605 - hydrogen peroxide content, TO:0000316 - photosynthetic ability, TO:0000063 - mimic response, TO:0000325 - soluble protein content, TO:0000249 - leaf senescence, TO:0000592 - 1000-dehulled grain weight, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance	PO:0001054 - 4 leaf senescence stage 
22843	LIP1	OsLIP1	LC3-INTERACTING PROTEIN 1	LC3-interacting protein 1	LC3-INTERACTING PROTEIN 1		10	a HIT zinc finger domain-containing protein. TO: 0000829: leaf lamina morphology trait.	 Vegetative organ - Leaf	Os10g0520700	LOC_Os10g37640.2, LOC_Os10g37640.1				GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0010252 - auxin homeostasis, GO:0046872 - metal ion binding	TO:0000163 - auxin sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000206 - leaf angle	
22844	_	OsbHLH168, bHLH168	_	basic helix-loop-helix protein 168			2			Os02g0791300	LOC_Os02g54870.1						
22845	_	OsbHLH169, bHLH169	_	basic helix-loop-helix protein 169			1			Os01g0630300	LOC_Os01g43950.1						
22846	_	OsbHLH171, bHLH171	_	basic helix-loop-helix protein 171			8			Os08g0260400	LOC_Os08g16030.1						
22847	_	OsbHLH176, bHLH176	_	basic helix-loop-helix protein 176			3			Os03g0311600	LOC_Os03g19780.1						
22848	_	OsbHLH177, bHLH177	_	basic helix-loop-helix protein 177			3	CT835941.		Os08g0414500	LOC_Os08g31950.1				GO:0046983 - protein dimerization activity		PO:0009010 - seed 
22849	_	OsbHLH178, bHLH178	_	basic helix-loop-helix protein 178			7				LOC_Os07g48900.1						
22850	_	OsbHLH179, bHLH179	_	basic helix-loop-helix protein 179			12	GO:0001228: DNA-binding transcription activator activity, RNA polymerase II-specific.		Os12g0180800	LOC_Os12g08025.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity		
22851	_	OsbHLH180, bHLH180	_	basic helix-loop-helix protein 180			1	GO:0001228: DNA-binding transcription activator activity, RNA polymerase II-specific.		Os01g0626900	LOC_Os01g43680.3, LOC_Os01g43680.2, LOC_Os01g43680.1				GO:0046983 - protein dimerization activity, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
22852	_	OsbHLH181, bHLH181	_	basic helix-loop-helix protein 181			12				LOC_Os12g31430.1				GO:0003677 - DNA binding, GO:0046983 - protein dimerization activity		
22853	_	OsbHLH182, bHLH182	_	basic helix-loop-helix protein 182			1			Os01g0243400	LOC_Os01g14110.1						
22854	_	OsbHLH183, bHLH183	_	basic helix-loop-helix protein 183			1			Os01g0518300	LOC_Os01g33400.1						
22855	_	OsbHLH184, bHLH184	_	basic helix-loop-helix protein 184			12			Os12g0536300	LOC_Os12g35070.1						
22856	_	OsbHLH185, bHLH185	_	basic helix-loop-helix protein 185			1		 Tolerance and resistance - Stress tolerance	Os01g0773800	LOC_Os01g56690.1				GO:0009414 - response to water deprivation, GO:0046983 - protein dimerization activity	TO:0000276 - drought tolerance	
22857	_	OsbHLH187, bHLH187	_	basic helix-loop-helix protein 187			1	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding. GO:0090575: RNA polymerase II transcription factor complex. AK353822.		Os01g0108400	LOC_Os01g01840.1				GO:0005634 - nucleus, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0008134 - transcription factor binding, GO:0046983 - protein dimerization activity		
22858	_	OsbHLH188, bHLH188	_	basic helix-loop-helix protein 188			7			Os07g0101200/Os07g0101300	LOC_Os07g01130.1				GO:0046983 - protein dimerization activity		
22859	UCH1	OsUCH1	UBIQUITIN C-TERMINAL HYDROLASE 1	ubiquitin C-terminal hydrolase 1	UBIQUITIN C-TERMINAL HYDROLASE 1		2		 Biochemical character	Os02g0180100	LOC_Os02g08370.1				GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity		
22860	UCH2	OsUCH2	UBIQUITIN C-TERMINAL HYDROLASE 2	ubiquitin C-terminal hydrolase 2	UBIQUITIN C-TERMINAL HYDROLASE 2		2		 Biochemical character	Os02g0180100	LOC_Os02g57630.5, LOC_Os02g57630.4, LOC_Os02g57630.3, LOC_Os02g57630.2, LOC_Os02g57630.1				GO:0004843 - ubiquitin-specific protease activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm		
22861	UCH3	OsUCH3	UBIQUITIN C-TERMINAL HYDROLASE 3	ubiquitin C-terminal hydrolase 3	UBIQUITIN C-TERMINAL HYDROLASE 3		2		 Biochemical character	Os02g0654500	LOC_Os02g43760.1				GO:0005829 - cytosol, GO:0004843 - ubiquitin-specific protease activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm		PO:0009029 - stamen 
22862	UCH4	OsUCH4	UBIQUITIN C-TERMINAL HYDROLASE 4	ubiquitin C-terminal hydrolase 4	UBIQUITIN C-TERMINAL HYDROLASE 4		4		 Biochemical character	Os04g0546400	LOC_Os04g46190.2, LOC_Os04g46190.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004843 - ubiquitin-specific protease activity		PO:0009029 - stamen 
22863	UCH5	OsUCH5	UBIQUITIN C-TERMINAL HYDROLASE 5	ubiquitin C-terminal hydrolase 5	UBIQUITIN C-TERMINAL HYDROLASE 5		4		 Biochemical character	Os04g0667500	LOC_Os04g57190.4, LOC_Os04g57190.3, LOC_Os04g57190.2, LOC_Os04g57190.1				GO:0005737 - cytoplasm, GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0006511 - ubiquitin-dependent protein catabolic process		PO:0009029 - stamen 
22864	UBP1-1	OsUBP1-1, OsUBP29, UBP29	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-1	ubiquitin-specific processing protease 1-1, Ubiquitin-specific protease 29	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-1		8	OsUBP29 in Ma et al. 2019.	 Biochemical character	Os08g0527100	LOC_Os08g41530.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination, GO:0008270 - zinc ion binding, GO:0004843 - ubiquitin-specific protease activity		
22865	UBP1-2	OsUBP1-2, OsUBP30, UBP30	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-2	ubiquitin-specific processing protease 1-2, Ubiquitin-specific protease 30	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-2		8	OsUBP30 in Ma et al. 2019.	 Biochemical character	Os08g0527200	LOC_Os08g41540.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity, GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22866	UBP1-3	OsUBP1-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-3	ubiquitin-specific processing protease 1-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-3		8	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os08g0527300	LOC_Os08g41550.1				GO:0016579 - protein deubiquitination, GO:0008270 - zinc ion binding		
22867	UBP1-4	OsUBP1-4, OsUBP2, UBP2	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-4	ubiquitin-specific processing protease 1-4, Ubiquitin-specific protease 2	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-4		8	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP2 in Ma et al. 2019.	 Biochemical character	Os08g0527400	LOC_Os08g41560.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination		
22868	UBP1-6	OsUBP1-6	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-6	ubiquitin-specific processing protease 1-6	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-6		8	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os08g0527800	LOC_Os08g41610.1				GO:0016579 - protein deubiquitination, GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process		
22869	UBP1-7	OsUBP1-7, OsUBP32, UBP32	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-7	ubiquitin-specific processing protease 1-7, Ubiquitin-specific protease 32	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-7		8	OsUBP32 in Ma et al. 2019.	 Biochemical character	Os08g0527900	LOC_Os08g41620.1				GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination		
22870	UBP1-9	OsUBP1-9, OsUBP1, UBP1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-9	ubiquitin-specific processing protease 1-9, Ubiquitin-specific protease 1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-9		9	OsUBP1 in Ma et al. 2019.	 Biochemical character	Os09g0505100	LOC_Os09g32740.1				GO:0016579 - protein deubiquitination, GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity		PO:0009029 - stamen 
22871	UBP1-10	OsUBP1-10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-10	ubiquitin-specific processing protease 1-10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-10		9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os11g0619500/Os11g0619601/Os11g0619701	LOC_Os11g40450.1				GO:0016021 - integral to membrane, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		
22872	UBP2-1	OsUBP2-1, OsUBP18, UBP18	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-1	ubiquitin-specific processing protease 2-1, Ubiquitin-specific protease 18	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-1		2	OsUBP18 in Ma et al. 2019.	 Biochemical character	Os02g0573400	LOC_Os02g36400.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016021 - integral to membrane		PO:0009029 - stamen 
22873	UBP2-2	OsUBP2-2, OsUBP4, UBP4	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-2	ubiquitin-specific processing protease 2-2, Ubiquitin-specific protease 4	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-2		3	OsUBP4 in Ma et al. 2019.	 Biochemical character	Os03g0190800	LOC_Os03g09080.1				GO:0004843 - ubiquitin-specific protease activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination, GO:0004197 - cysteine-type endopeptidase activity		
22874	UBP2-3	OsUBP2-3, OsUBP3, UBP3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-3	ubiquitin-specific processing protease 2-3, Ubiquitin-specific protease 3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-3		4	OsUBP3 in Ma et al. 2019.	 Biochemical character	Os04g0452400	LOC_Os04g37950.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004843 - ubiquitin-specific protease activity		
22875	UBP3	OsUBP3, OsUBP6, UBP6	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 3	ubiquitin-specific processing protease 3, Ubiquitin-specific protease 6	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 3		1	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP6 in Ma et al. 2019.	 Biochemical character	Os01g0550100	LOC_Os01g36930.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		PO:0009029 - stamen 
22876	UBP4-1	OsUBP4-1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-1	ubiquitin-specific processing protease 4-1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-1		1		 Biochemical character		LOC_Os01g48600.1						PO:0009029 - stamen 
22877	UBP4-2	OsUBP4-2, OsUBP10, UBP10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-2	ubiquitin-specific processing protease 4-2, Ubiquitin-specific protease 10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-2		7	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP10 in Ma et al. 2019.	 Biochemical character	Os07g0160000	LOC_Os07g06610.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		PO:0009029 - stamen 
22878	UBP4-3	OsUBP4-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-3	ubiquitin-specific processing protease 4-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-3		9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os09g0343900	LOC_Os09g17480.1				GO:0016579 - protein deubiquitination		
22879	UBP4-4	OsUBP4-4, OsUBP9, UBP9	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-4	ubiquitin-specific processing protease 4-4, Ubiquitin-specific protease 9	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-4		10	OsUBP9 in Ma et al. 2019.	 Biochemical character	Os10g0160000	LOC_Os10g07270.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004843 - ubiquitin-specific protease activity, GO:0016579 - protein deubiquitination		PO:0009029 - stamen 
22880	FLA	UBP4-5, OsUBP4-5, OsUBP5, UBP5, OsFLA	FLOWER AND LEAF COLOR ABERRANT	ubiquitin-specific processing protease 4-5, flower and leaf color aberrant, Ubiquitin-specific protease 5	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-5	fla	11	OsUBP5 in Ma et al. 2019. TO:0006064: rolled leaf. TO:1000024: palea morphology trait. TO:1000023: lemma morphology trait.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0473200	LOC_Os11g28360.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004843 - ubiquitin-specific protease activity, GO:0009555 - pollen development, GO:0016020 - membrane, GO:0048437 - floral organ development, GO:0048439 - flower morphogenesis, GO:0009658 - chloroplast organization, GO:0009908 - flower development, GO:0016579 - protein deubiquitination	TO:0000495 - chlorophyll content, TO:0000622 - flower development trait, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000069 - variegated leaf, TO:0000455 - seed set percent, TO:0000072 - awn length, TO:0000209 - palea number, TO:0000734 - grain length, TO:0000614 - lemma shape	PO:0007615 - flower development stage , PO:0025395 - floral organ , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0001007 - pollen development stage , PO:0025060 - lamina , PO:0009038 - palea , PO:0009066 - anther 
22881	UBP4-6	OsUBP4-6, OsUBP11, UBP11	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-6	ubiquitin-specific processing protease 4-6, Ubiquitin-specific protease 11	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-6		11	CT835620. GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP11 in Ma et al. 2019.	 Biochemical character	Os11g0473350	LOC_Os11g28365.1				GO:0016579 - protein deubiquitination		
22882	UBP4-7	OsUBP4-7	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-7	ubiquitin-specific processing protease 4-7	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-7		11	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os11g0667400	LOC_Os11g44540.1				GO:0016579 - protein deubiquitination		
22883	UBP4-8	OsUBP4-8, OsUBP8, UBP8	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-8	ubiquitin-specific processing protease 4-8, Ubiquitin-specific protease 8	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-8		12	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP8 in Ma et al. 2019.	 Biochemical character	Os12g0621000	LOC_Os12g42600.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		
22884	UBP5-3	OsUBP5-3, OsUBP21, UBP21	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 5-3	ubiquitin-specific processing protease 5-3, Ubiquitin-specific protease 21	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 5-3		11	OsUBP21 in Ma et al. 2019.	 Biochemical character	Os11g0573000	LOC_Os11g36470.1				GO:0005829 - cytosol, GO:0031647 - regulation of protein stability, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22885	UBP6	OsUBP6, OsUBP14, UBP14	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 6	ubiquitin-specific processing protease 6, Ubiquitin-specific protease 14	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 6		1	OsUBP14 in Ma et al. 2019.	 Biochemical character	Os01g0177200	LOC_Os01g08200.1				GO:0005829 - cytosol, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0048767 - root hair elongation, GO:0009793 - embryonic development ending in seed dormancy		PO:0009029 - stamen 
22886	UBP7-2	OsUBP7-2, OsUBP23, UBP23	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-2	ubiquitin-specific processing protease 7-2, Ubiquitin-specific protease 23	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-2		2	OsUBP23 in Ma et al. 2019.	 Biochemical character	Os02g0795000	LOC_Os02g55180.2, LOC_Os02g55180.1				GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22887	UBP7-3	OsUBP7-3, OsUBP25, UBP25	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-3	ubiquitin-specific processing protease 7-3, Ubiquitin-specific protease 25	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-3		5	OsUBP25 in Ma et al. 2019.	 Biochemical character	Os05g0510300	LOC_Os05g43480.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity		
22888	UBP7-5	OsUBP7-5, OsUBP19, UBP19	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-5	ubiquitin-specific processing protease 7-5, Ubiquitin-specific protease 19	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-5		6	OsUBP19 in Ma et al. 2019.	 Biochemical character	Os06g0654000	LOC_Os06g44380.1				GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		PO:0009029 - stamen 
22889	UBP7-6	OsUBP7-6, OsUBP17, UBP17	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-6	ubiquitin-specific processing protease 7-6, Ubiquitin-specific protease 17	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-6		8	OsUBP17 in Ma et al. 2019.	 Biochemical character	Os08g0478500	LOC_Os08g37350.1				GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity		PO:0009029 - stamen 
22890	UBP7-7	OsUBP7-7, OsUBP16, UBP16	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-7	ubiquitin-specific processing protease 7-7, Ubiquitin-specific protease 16	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-7		9	OsUBP16 in Ma et al. 2019.	 Biochemical character	Os09g0464400	LOC_Os09g28940.1				GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0046872 - metal ion binding		
22891	UBP8	OsUBP8, OsUBP20, UBP20	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 8	ubiquitin-specific processing protease 8, Ubiquitin-specific protease 20	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 8		2	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP20 in Ma et al. 2019.	 Biochemical character	Os02g0693400	LOC_Os02g46650.1				GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22892	UBP9-1	OsUBP9-1, OsUBP22, UBP22	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-1	ubiquitin-specific processing protease 9-1, Ubiquitin-specific protease 22	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-1		4	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP22 in Ma et al. 2019.	 Biochemical character	Os04g0647300	LOC_Os04g55360.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		
22893	UBP9-2	OsUBP9-2, OsUBP34, UBP34	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-2	ubiquitin-specific processing protease 9-2, Ubiquitin-specific protease 34	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-2		9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP34 in Ma et al. 2019.	 Biochemical character	Os09g0407900	LOC_Os09g24250.1				GO:0000245 - spliceosome assembly, GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination		
22894	UBP10	OsUBP10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 10	ubiquitin-specific processing protease 10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 10		7		 Biochemical character	Os07g0661300	LOC_Os07g46660.2, LOC_Os07g46660.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination		
22895	UBP11	OsUBP11, OsUBP26, UBP26	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 11	ubiquitin-specific processing protease 11, Ubiquitin-specific protease 26	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 11		3	A3AF13. OsUBP26 in Ma et al. 2019.	 Biochemical character	Os03g0192800	LOC_Os03g09260.1				GO:0005634 - nucleus, GO:0016579 - protein deubiquitination, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity, GO:0006511 - ubiquitin-dependent protein catabolic process		
22896	UBP12	OsUBP12, OsUBP27, UBP27	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 12	ubiquitin-specific processing protease 12, Ubiquitin-specific protease 27	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 12		4	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP27 in Ma et al. 2019.	 Biochemical character	Os04g0429200	LOC_Os04g34984.3, LOC_Os04g34984.2, LOC_Os04g34984.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		
22897	UBP14-1	OsUBP14-1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-1	ubiquitin-specific processing protease 14-1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-1		9		 Biochemical character	Os09g0547900	LOC_Os09g37580.1						
22898	UBP14-2	OsUBP14-2, OsUBP24, UBP24	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-2	ubiquitin-specific processing protease 14-2, Ubiquitin-specific protease 24	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-2		3	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP24 in Ma et al. 2019.	 Biochemical character	Os03g0165600	LOC_Os03g06950.1				GO:0016579 - protein deubiquitination		
22899	UBP14-3	OsUBP14-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-3	ubiquitin-specific processing protease 14-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-3		11		 Biochemical character	Os11g0549605							
22900	UCH	OsUCH	UBIQUITIN C-TERMINAL HYDROLASE	ubiquitin C-terminal hydrolase	UBIQUITIN C-TERMINAL HYDROLASE		11		 Biochemical character	Os11g0598800	LOC_Os11g38610.2						PO:0009029 - stamen 
22901	_		_	lipin N-terminal conserved region family protein			5	OsCaM1 target gene.		Os05g0462400	LOC_Os05g38710.3, LOC_Os05g38710.2, LOC_Os05g38710.1				GO:0008195 - phosphatidate phosphatase activity		
22902	_		_	DUF1336 domain containing protein			8	OsCaM1 target gene.		Os08g0439100	LOC_Os08g34060.4, LOC_Os08g34060.3, LOC_Os08g34060.2, LOC_Os08g34060.1				GO:0005886 - plasma membrane, GO:0008289 - lipid binding		
22903	_		_				2	OsCaM1 target gene.		Os02g0223700	LOC_Os02g13060.1				GO:0008289 - lipid binding, GO:0005886 - plasma membrane		
22904	CGS1	OsaCGS1, OsCGS1	CYSTATHIONINE GAMMA-SYNTHASE 1	cystathionine gamma-synthase 1	CYSTATHIONINE GAMMA-SYNTHASE 1		10		 Biochemical character	Os10g0399200	LOC_Os10g25950.1				GO:0030170 - pyridoxal phosphate binding, GO:0016829 - lyase activity		
22905	CGS2	OsaCGS2, OsCGS2	CYSTATHIONINE GAMMA-SYNTHASE 2	cystathionine gamma-synthase 2	CYSTATHIONINE GAMMA-SYNTHASE 2		10		 Biochemical character	Os10g0399700	LOC_Os10g26010.1				GO:0016829 - lyase activity, GO:0030170 - pyridoxal phosphate binding		
22906	CGS3	OsaCGS3, OsCGS3	CYSTATHIONINE GAMMA-SYNTHASE 3	cystathionine gamma-synthase 3	CYSTATHIONINE GAMMA-SYNTHASE 3		6		 Biochemical character	Os06g0242600	LOC_Os06g13450.1				GO:0030170 - pyridoxal phosphate binding, GO:0016829 - lyase activity		PO:0025034 - leaf , PO:0009005 - root 
22907	CGS4	OsaCGS4, OsCGS4	CYSTATHIONINE GAMMA-SYNTHASE 4	cystathionine gamma-synthase 4	CYSTATHIONINE GAMMA-SYNTHASE 4		10		 Biochemical character	Os10g0399100	LOC_Os10g25930.1				GO:0016829 - lyase activity, GO:0030170 - pyridoxal phosphate binding		
22908	MMT	OsaMMT, OsMMT	METHIONINE METHYLTRANSFERASE	methionine methyltransferase	METHIONINE METHYLTRANSFERASE		5		 Biochemical character	Os05g0105000	LOC_Os05g01470.3, LOC_Os05g01470.2, LOC_Os05g01470.1				GO:0005829 - cytosol, GO:0001887 - selenium metabolic process, GO:0046500 - S-adenosylmethionine metabolic process, GO:0009058 - biosynthetic process, GO:0030732 - methionine S-methyltransferase activity, GO:0030170 - pyridoxal phosphate binding		
22909	CGS5	OsaCGS5, OsCGS5	CYSTATHIONINE GAMMA-SYNTHASE 5	cystathionine gamma-synthase 5	CYSTATHIONINE GAMMA-SYNTHASE 5		3		 Biochemical character	Os03g0376100	LOC_Os03g25940.4, LOC_Os03g25940.1				GO:0003824 - catalytic activity, GO:0030170 - pyridoxal phosphate binding		PO:0009089 - endosperm 
22910	HMT1	OsaHMT1, OsHMT1	HOMOCYSTEINE METHYLTRANSFERASE 1	homocysteine methyltransferase 1	HOMOCYSTEINE METHYLTRANSFERASE 1		10		 Biochemical character	Os10g0422200	LOC_Os10g28630.2, LOC_Os10g28630.1				GO:0033528 - S-methylmethionine cycle, GO:0009086 - methionine biosynthetic process, GO:0008270 - zinc ion binding, GO:0008898 - homocysteine S-methyltransferase activity, GO:0047150 - betaine-homocysteine S-methyltransferase activity		PO:0009005 - root , PO:0025034 - leaf 
22911	HMT2	OsaHMT2, OsHMT2	HOMOCYSTEINE METHYLTRANSFERASE 2	homocysteine methyltransferase 2	HOMOCYSTEINE METHYLTRANSFERASE 2		1		 Biochemical character	Os01g0772900	LOC_Os01g56610.1				GO:0047150 - betaine-homocysteine S-methyltransferase activity, GO:0008898 - homocysteine S-methyltransferase activity, GO:0008270 - zinc ion binding, GO:0009086 - methionine biosynthetic process, GO:0033528 - S-methylmethionine cycle		PO:0025082 - reproductive shoot system 
22912	HMT3	OsaHMT3, OsHMT3	HOMOCYSTEINE METHYLTRANSFERASE 3	homocysteine methyltransferase 3	HOMOCYSTEINE METHYLTRANSFERASE 3		3		 Biochemical character	Os03g0221200	LOC_Os03g12110.2, LOC_Os03g12110.1				GO:0033528 - S-methylmethionine cycle, GO:0009086 - methionine biosynthetic process, GO:0008898 - homocysteine S-methyltransferase activity		
22913	HMT4	OsaHMT4, OsHMT4	HOMOCYSTEINE METHYLTRANSFERASE 4	homocysteine methyltransferase 4	HOMOCYSTEINE METHYLTRANSFERASE 4		12		 Biochemical character	Os12g0607000	LOC_Os12g41390.3, LOC_Os12g41390.2, LOC_Os12g41390.1				GO:0008270 - zinc ion binding, GO:0047150 - betaine-homocysteine S-methyltransferase activity, GO:0008898 - homocysteine S-methyltransferase activity, GO:0009086 - methionine biosynthetic process, GO:0033528 - S-methylmethionine cycle		PO:0025082 - reproductive shoot system 
22914	SAE1	OsSAE1, OsSAE1.1, OsSAE1.2, OsSAE1.3	SUMO-ACTIVATING ENZYME 1	SUMO-activating enzyme 1, E1 SUMO-activating enzyme 1	SUMO-ACTIVATING ENZYME 1		11		 Biochemical character	Os11g0497000	LOC_Os11g30410.3, LOC_Os11g30410.2, LOC_Os11g30410.1				GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005737 - cytoplasm, GO:0031510 - SUMO activating enzyme complex, GO:0016925 - protein sumoylation, GO:0032446 - protein modification by small protein conjugation, GO:0019948 - SUMO activating enzyme activity	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
22915	SAE2	OsSAE2, OsSAE2.1, OsSAE2.2, OsSAE2.3	SUMO-ACTIVATING ENZYME 2	SUMO-activating enzyme 2, E1 SUMO-activating enzyme 2, E1 enzyme SAE2	SUMO-ACTIVATING ENZYME 2		11		 Biochemical character	Os07g0586500	LOC_Os07g39780.3, LOC_Os07g39780.2, LOC_Os07g39780.1				GO:0019948 - SUMO activating enzyme activity, GO:0032446 - protein modification by small protein conjugation, GO:0016925 - protein sumoylation, GO:0031510 - SUMO activating enzyme complex, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
22916	SUMO2	OsSUMO2	SMALL UBIQUITIN LIKE MODIFIER 2	small ubiquitin like modifier 2, small ubiquitin like modifier protein 2, SUMO protein 2	SMALL UBIQUITIN LIKE MODIFIER 2		1	GO:0044389: ubiquitin-like protein ligase binding.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0918200             	LOC_Os01g68940.1				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0016925 - protein sumoylation, GO:0031386 - protein tag	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
22917	HPY2	OsHPY2, OsHPY2.1, OsHPY2.2	HIGH PLOIDY 2	HIGH PLOIDY2	HIGH PLOIDY 2		5	E3 SUMO ligase.	 Biochemical character	Os05g0563500	LOC_Os05g48880.2, LOC_Os05g48880.1				GO:0030915 - Smc5-Smc6 complex, GO:0016021 - integral to membrane, GO:0000724 - double-strand break repair via homologous recombination, GO:0019789 - SUMO ligase activity		PO:0009005 - root 
22918	_		_	uricase			1		 Biochemical character	Os01g0865100	LOC_Os01g64520.2, LOC_Os01g64520.1				GO:0005777 - peroxisome, GO:0019628 - urate catabolic process, GO:0006144 - purine base metabolic process, GO:0007031 - peroxisome organization, GO:0004846 - urate oxidase activity		
22919	_		_	DUF26 domain protein			1			Os08g0136300	LOC_Os08g04210.1						
22920	MPK9	OsMPK9	MITOGEN-ACTIVATED PROTEIN KINASE 9	mitogen-activated protein kinase 9	MITOGEN-ACTIVATED PROTEIN KINASE 9		5	Q6L5D4. GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os05g0582400	LOC_Os05g50560.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0010468 - regulation of gene expression, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding, GO:0002213 - defense response to insect, GO:0009814 - defense response, incompatible interaction, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance	
22921	_	OsMPK16, MPK16	_	mitogen-activated protein kinase 16			5	Q5VP69. GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance		LOC_Os01g45620.1				GO:0009611 - response to wounding, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0005524 - ATP binding, GO:0004707 - MAP kinase activity, GO:0010468 - regulation of gene expression, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance	
22922	ATASE2	Atase2, OsATASE2	AMIDO PHOSPHORIBOSYLTRANSFERASE 2	amido phosphoribosyltransferase 2	AMIDO PHOSPHORIBOSYLTRANSFERASE 2		1		 Biochemical character	Os01g0873200							
22923	GARS	OsGARS	GAR SYNTHETASE	GAR synthetase	GAR SYNTHETASE		5		 Biochemical character	Os05g0270800 	LOC_Os05g18790.1				GO:0009507 - chloroplast, GO:0006189 - 'de novo' IMP biosynthetic process, GO:0004644 - phosphoribosylglycinamide formyltransferase activity		
22924	GART	OsGART	GAR FORMYL TRANSFERASE	GAR formyl transferase	GAR FORMYL TRANSFERASE		8		 Biochemical character	Os08g0500900  	LOC_Os08g39160.1				GO:0004644 - phosphoribosylglycinamide formyltransferase activity, GO:0006189 - 'de novo' IMP biosynthetic process, GO:0009507 - chloroplast		
22925	FGAMS	OsFGAMS	FGAM SYNTHETASE	FGAM synthetase	FGAM SYNTHETASE		1		 Biochemical character	Os01g0888500  	LOC_Os01g66500.1				GO:0005737 - cytoplasm, GO:0004642 - phosphoribosylformylglycinamidine synthase activity, GO:0006189 - 'de novo' IMP biosynthetic process		
22926	AIRS	OsAIRS	AIR SYNTHETASE	AIR synthetase	AIR SYNTHETASE		3		 Biochemical character	Os03g0831500  	LOC_Os03g61600.1				GO:0005829 - cytosol, GO:0006164 - purine nucleotide biosynthetic process, GO:0046084 - adenine biosynthetic process, GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity, GO:0004637 - phosphoribosylamine-glycine ligase activity, GO:0006189 - 'de novo' IMP biosynthetic process		
22927	AIRC	OsAIRC	AIR CARBOXYLASE	AIR carboxylase	AIR CARBOXYLASE		1		 Biochemical character	Os01g0199900  	LOC_Os01g10280.4, LOC_Os01g10280.3, LOC_Os01g10280.2, LOC_Os01g10280.1				GO:0009507 - chloroplast, GO:0004638 - phosphoribosylaminoimidazole carboxylase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0006189 - 'de novo' IMP biosynthetic process		
22928	ASL	OsASL	ADENYLOSUCCINATE LYASE	adenylosuccinate lyase	ADENYLOSUCCINATE LYASE		3	GO:0044208: 'de novo' AMP biosynthetic process.	 Biochemical character	Os03g0313600  	LOC_Os03g19930.4, LOC_Os03g19930.3, LOC_Os03g19930.2, LOC_Os03g19930.1				GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, GO:0070626 - (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity, GO:0006189 - 'de novo' IMP biosynthetic process		
22929	ATIC	OsATIC	AICAR FORMYL TRANSFERASE	AICAR formyl transferase	AICAR FORMYL TRANSFERASE		8		 Biochemical character	Os08g0206600  	LOC_Os08g10570.2, LOC_Os08g10570.1				GO:0006164 - purine nucleotide biosynthetic process, GO:0010319 - stromule, GO:0005829 - cytosol, GO:0009570 - chloroplast stroma, GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity, GO:0003937 - IMP cyclohydrolase activity, GO:0006189 - 'de novo' IMP biosynthetic process		
22930	ASS1	OsASS1	SAMP SYNTHETASE 1	SAMP synthetase 1	SAMP SYNTHETASE 1		3	Q851S8. GO:0044208: 'de novo' AMP biosynthetic process.	 Biochemical character	Os03g0699300	LOC_Os03g49220.2, LOC_Os03g49220.1				GO:0004019 - adenylosuccinate synthase activity, GO:0005525 - GTP binding, GO:0000287 - magnesium ion binding, GO:0046040 - IMP metabolic process, GO:0009507 - chloroplast, GO:0005737 - cytoplasm		
22931	DIRP1	OsDIRP1	DROUGHT-INDUCED RING PROTEIN 1	Drought-Induced RING Protein 1	DROUGHT-INDUCED RING PROTEIN 1		6		 Tolerance and resistance - Stress tolerance	Os06g0687300	LOC_Os06g47280.1				GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
22932	ACLA2	SPL30, OsACL-A2, ACL-A2	ATP-CITRATE LYASE A2	spotted leaf 30, ATP-citrate lyase A2	ATP-CITRATE LYASE A2	spl30-1, spl30-2	12	Q2QNG7.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0566300	LOC_Os12g37870.1				GO:0031348 - negative regulation of defense response, GO:0060548 - negative regulation of cell death, GO:0006952 - defense response, GO:0009346 - citrate lyase complex, GO:0005829 - cytosol, GO:0006633 - fatty acid biosynthetic process, GO:0006085 - acetyl-CoA biosynthetic process, GO:0003878 - ATP citrate synthase activity, GO:0005524 - ATP binding	TO:0000063 - mimic response, TO:0000112 - disease resistance	
22933	ACLA1	OsACL-A1, ACL-A1	ATP-CITRATE LYASE A1	ATP-citrate lyase A1	ATP-CITRATE LYASE A1		11	Q2QZ86.	 Biochemical character	Os11g0696200	LOC_Os11g47330.1				GO:0005524 - ATP binding, GO:0003878 - ATP citrate synthase activity, GO:0006085 - acetyl-CoA biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0005829 - cytosol, GO:0009346 - citrate lyase complex		
22934	ACLA3	OsACL-A3, ACL-A3	ATP-CITRATE LYASE A3	ATP-citrate lyase A3	ATP-CITRATE LYASE A3		11	Q53JY8.	 Biochemical character	Os11g0693800					GO:0009346 - citrate lyase complex, GO:0005829 - cytosol, GO:0006633 - fatty acid biosynthetic process, GO:0006085 - acetyl-CoA biosynthetic process, GO:0003878 - ATP citrate synthase activity, GO:0005524 - ATP binding		
22935	MSL01	OsMSL01, MSL1	MYB/SANT-LIKE 1	Myb/SANT-LIKE 1	MYB/SANT-LIKE 1		1		 Tolerance and resistance - Stress tolerance	Os01g0210200	LOC_Os01g11200.1				GO:0009642 - response to light intensity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22936	MSL16	OsMSL16	MYB/SANT-LIKE 16	Myb/SANT-LIKE 16	MYB/SANT-LIKE 16		3		 Tolerance and resistance - Stress tolerance	Os03g0643100	LOC_Os03g44130.1				GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009642 - response to light intensity	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22937	MSL25	OsMSL25, OsMSL25a, OsMSL25b	MYB/SANT-LIKE 25	Myb/SANT-LIKE 25	MYB/SANT-LIKE 25		5	GO:0044212: transcription regulatory region DNA binding.	 Tolerance and resistance - Stress tolerance	Os05g0560600	LOC_Os05g48690.2, LOC_Os05g48690.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0009642 - response to light intensity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22938	MSL27	OsMSL27	MYB/SANT-LIKE 27	Myb/SANT-LIKE 27	MYB/SANT-LIKE 27		7		 Tolerance and resistance - Stress tolerance	Os07g0115800	LOC_Os07g02500.1				GO:0009642 - response to light intensity, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22939	MSL28	OsMSL28	MYB/SANT-LIKE 28	Myb/SANT-LIKE 28	MYB/SANT-LIKE 28		7		 Tolerance and resistance - Stress tolerance	Os07g0210800	LOC_Os07g10950.1				GO:0009642 - response to light intensity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22940	MSL33	OsMSL33	MYB/SANT-LIKE 33	Myb/SANT-LIKE 33	MYB/SANT-LIKE 33		9		 Tolerance and resistance - Stress tolerance	Os09g0122200	LOC_Os09g03570.1				GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009642 - response to light intensity	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22941	MSL34	OsMSL34, OsMSL34a, OsMSL34b	MYB/SANT-LIKE 34	Myb/SANT-LIKE 34	MYB/SANT-LIKE 34		9	GO:0044212: transcription regulatory region DNA binding.	 Tolerance and resistance - Stress tolerance	Os09g0558200	LOC_Os09g38570.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0009642 - response to light intensity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0025034 - leaf 
22942	MSL35	OsMSL35	MYB/SANT-LIKE 35	Myb/SANT-LIKE 35	MYB/SANT-LIKE 35		10		 Tolerance and resistance - Stress tolerance	Os10g0468301	LOC_Os10g33030.1				GO:0009642 - response to light intensity, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22943	MSL39	OsMSL39	MYB/SANT-LIKE 39	Myb/SANT-LIKE 39	MYB/SANT-LIKE 39		11		 Tolerance and resistance - Stress tolerance	Os11g0599400	LOC_Os11g38660.1				GO:0009642 - response to light intensity, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22944	MSL41	OsMSL41	MYB/SANT-LIKE 41	Myb/SANT-LIKE 41	MYB/SANT-LIKE 41		12		 Tolerance and resistance - Stress tolerance	Os12g0207200	LOC_Os12g10550.1				GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009642 - response to light intensity	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22945	MSL02	OsMSL02, MSL2	MYB/SANT-LIKE 2	Myb/SANT-LIKE 2	MYB/SANT-LIKE 2		1			Os01g0373400	LOC_Os01g27590.1				GO:0005840 - ribosome, GO:0003677 - DNA binding, GO:0005634 - nucleus		
22946	MSL03	OsMSL03, MSL3	MYB/SANT-LIKE 3	Myb/SANT-LIKE 3	MYB/SANT-LIKE 3		1			Os01g0527900	LOC_Os01g34400.1				GO:0009507 - chloroplast, GO:0005840 - ribosome		PO:0025034 - leaf , PO:0009047 - stem 
22947	MSL04	OsMSL04, MSL4	MYB/SANT-LIKE 4	Myb/SANT-LIKE 4	MYB/SANT-LIKE 4		1			Os01g0549300	LOC_Os01g36850.1				GO:0003677 - DNA binding, GO:0005777 - peroxisome, GO:0005840 - ribosome		PO:0020104 - leaf sheath , PO:0025034 - leaf 
22948	MSL05	OsMSL05, MSL5	MYB/SANT-LIKE 5	Myb/SANT-LIKE 5	MYB/SANT-LIKE 5		1	GO:0044212: transcription regulatory region DNA binding.		Os01g0674000	LOC_Os01g48320.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		PO:0009047 - stem , PO:0025034 - leaf 
22949	MSL06	OsMSL06, MSL6	MYB/SANT-LIKE 6	Myb/SANT-LIKE 6	MYB/SANT-LIKE 6		1	GO:0044212: transcription regulatory region DNA binding.		Os01g0718900	LOC_Os01g52090.2, LOC_Os01g52090.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		PO:0020104 - leaf sheath , PO:0025034 - leaf 
22950	MSL08	OsMSL08, MSL8	MYB/SANT-LIKE 8	Myb/SANT-LIKE 8	MYB/SANT-LIKE 8		2			Os02g0104500	LOC_Os02g01380.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22951	MSL09	OsMSL09, MSL9	MYB/SANT-LIKE 9	Myb/SANT-LIKE 9	MYB/SANT-LIKE 9		2			Os02g0174300	LOC_Os02g07800.1				GO:0009507 - chloroplast		PO:0025034 - leaf , PO:0020104 - leaf sheath 
22952	MSL10	OsMSL10, MSL10	MYB/SANT-LIKE 10	Myb/SANT-LIKE 10	MYB/SANT-LIKE 10		2			Os02g0181400	LOC_Os02g08450.1				GO:0009507 - chloroplast		PO:0025034 - leaf , PO:0020104 - leaf sheath 
22953	MSL11	OsMSL11	MYB/SANT-LIKE 11	Myb/SANT-LIKE 11	MYB/SANT-LIKE 11		2			Os02g0516800	LOC_Os02g31160.1				GO:0005634 - nucleus		PO:0009047 - stem , PO:0025034 - leaf 
22954	MSL13	OsMSL13	MYB/SANT-LIKE 13	Myb/SANT-LIKE 13	MYB/SANT-LIKE 13		2			Os02g0542400	LOC_Os02g33770.1				GO:0005634 - nucleus		PO:0009047 - stem , PO:0025034 - leaf 
22955	MSL14	OsMSL14	MYB/SANT-LIKE 14	Myb/SANT-LIKE 14	MYB/SANT-LIKE 14		2			Os02g0565000	LOC_Os02g35690.2, LOC_Os02g35690.1				GO:0005634 - nucleus		
22956	MSL15	OsMSL15	MYB/SANT-LIKE 15	Myb/SANT-LIKE 15	MYB/SANT-LIKE 15		2			Os02g0648300	LOC_Os02g43300.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22957	MSL17	OsMSL17	MYB/SANT-LIKE 17	Myb/SANT-LIKE 17	MYB/SANT-LIKE 17		3			Os03g0666300	LOC_Os03g46350.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22958	MSL18	OsMSL18	MYB/SANT-LIKE 18	Myb/SANT-LIKE 18	MYB/SANT-LIKE 18		4			Os04g0286500	LOC_Os04g21860.1				GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22959	MSL19	OsMSL19	MYB/SANT-LIKE 19	Myb/SANT-LIKE 19	MYB/SANT-LIKE 19		4			Os04g0377932	LOC_Os04g30890.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0009005 - root 
22960	MSL20	OsMSL20	MYB/SANT-LIKE 20	Myb/SANT-LIKE 20	MYB/SANT-LIKE 20		4	GO:0044212: transcription regulatory region DNA binding.		Os04g0445600	LOC_Os04g36790.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		PO:0009005 - root 
22961	MSL24	OsMSL24	MYB/SANT-LIKE 24	Myb/SANT-LIKE 24	MYB/SANT-LIKE 24		5			Os05g0128000	LOC_Os05g03740.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22962	MSL26	OsMSL26	MYB/SANT-LIKE 26	Myb/SANT-LIKE 26	MYB/SANT-LIKE 26		6			Os06g0521000	LOC_Os06g32944.1				GO:0005840 - ribosome, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22963	MSL29	OsMSL29	MYB/SANT-LIKE 29	Myb/SANT-LIKE 29	MYB/SANT-LIKE 29		8			Os08g0178900	LOC_Os08g08130.1				GO:0005777 - peroxisome, GO:0003677 - DNA binding		PO:0025034 - leaf , PO:0009047 - stem 
22964	MSL30	OsMSL30	MYB/SANT-LIKE 30	Myb/SANT-LIKE 30	MYB/SANT-LIKE 30		8			Os08g0225900	LOC_Os08g12950.1				GO:0005634 - nucleus		PO:0020104 - leaf sheath , PO:0025034 - leaf 
22965	MSL31	OsMSL31	MYB/SANT-LIKE 31	Myb/SANT-LIKE 31	MYB/SANT-LIKE 31		8	GO:0044212: transcription regulatory region DNA binding.		Os08g0484700	LOC_Os08g37810.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		PO:0009005 - root 
22966	MSL32	OsMSL32	MYB/SANT-LIKE 32	Myb/SANT-LIKE 32	MYB/SANT-LIKE 32		8			Os08g0561000	LOC_Os08g44690.1				GO:0005840 - ribosome, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22967	MSL36	OsMSL36	MYB/SANT-LIKE 36	Myb/SANT-LIKE 36	MYB/SANT-LIKE 36		10	GO:0044212: transcription regulatory region DNA binding.		Os10g0564200	LOC_Os10g41460.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		PO:0009005 - root 
22968	MSL37	OsMSL37	MYB/SANT-LIKE 37	Myb/SANT-LIKE 37	MYB/SANT-LIKE 37		11			Os11g0163500	LOC_Os11g06410.3, LOC_Os11g06410.2, LOC_Os11g06410.1				GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22969	MSL38	OsMSL38	MYB/SANT-LIKE 38	Myb/SANT-LIKE 38	MYB/SANT-LIKE 38		11			Os11g0282700	LOC_Os11g17954.1				GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22971	MSL40	OsMSL40	MYB/SANT-LIKE 40	Myb/SANT-LIKE 40	MYB/SANT-LIKE 40		12			Os12g0163500	LOC_Os12g06640.2, LOC_Os12g06640.1				GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22972	SEC1	OsSEC1	SECRET AGENT 1				1	O-linked N-acetylglucosamine (O-GlcNAc) transferase (OGT).		Os01g0915400	LOC_Os01g68680.1						
22973	SEC2	OsSEC2	SECRET AGENT 2				1	O-linked N-acetylglucosamine (O-GlcNAc) transferase (OGT).	 Biochemical character	Os02g0489550	LOC_Os02g28830.1				GO:0006493 - protein amino acid O-linked glycosylation, GO:0016757 - transferase activity, transferring glycosyl groups		
22974	SG1	OsSG1, OsSG1-1, OsSG1-2, OsSG1-3	STAY-GREEN 1	stay-green 1			7	Q6Z3A3.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os07g0462000	LOC_Os07g27790.1				GO:0009507 - chloroplast, GO:0006750 - glutathione biosynthetic process, GO:0004357 - glutamate-cysteine ligase activity, GO:0005524 - ATP binding	TO:0000495 - chlorophyll content, TO:0000326 - leaf color	
22975	_	PR1	_	Pathogen response gene 1			7			Os07g0125201	LOC_Os07g03319.1				GO:0005615 - extracellular space		
22976	_	OsMYB6, MYB6	_	MYB transcription factor 6			4	MK061534. GO:1902584: positive regulation of response to water deprivation. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0676700	LOC_Os04g58020.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
22977	LPA1-P	OsLpa1-P, Lpa1-P	LOW PHYTIC ACID 1-PARALOG	low phytic acid 1-paralog, OsLpa1 paralog			9	Q651A1.		Os09g0572200	LOC_Os09g39870.2, LOC_Os09g39870.1						
22978	G1L10	OsG1L10	G1 LIKE PROTEIN 10		G1 LIKE PROTEIN 10		1	OsG1L10 gene is expressed at extremely low levels in almost all studied tissues. OsG1L10 might have lost its function (lLi et al. 2019).			LOC_Os01g54180.1						
22979	G1L11	OsG1L11	G1 LIKE PROTEIN 11		G1 LIKE PROTEIN 11		5	OsG1L11 gene is expressed at extremely low levels in almost all studied tissues. OsG1L11 might have lost its function (lLi et al. 2019).			LOC_Os05g27120.1						
22980	G1L12	OsG1L12	G1 LIKE PROTEIN 12		G1 LIKE PROTEIN 12		8				LOC_Os08g09660.1						
22981	G1L13	OsG1L13	G1 LIKE PROTEIN 13		G1 LIKE PROTEIN 13		8			Os08g0248000	LOC_Os08g14970.1				GO:0005634 - nucleus, GO:0009416 - response to light stimulus		PO:0020104 - leaf sheath 
22982	BC1L8	OsBC1L8	BRITTLE CULM-LIKE 8	BRITTLE CULM1-like 8			7		 Vegetative organ - Culm	Os07g0690900	LOC_Os07g49080.1				GO:0031225 - anchored to membrane, GO:0010215 - cellulose microfibril organization, GO:0016021 - integral to membrane		
22983	BC1L2	OsBC1L2	BRITTLE CULM-LIKE 2	BRITTLE CULM1-like 2			3	Q75IW1.	 Vegetative organ - Culm	Os03g0416300	LOC_Os03g30260.1				GO:0009664 - plant-type cell wall organization, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009832 - plant-type cell wall biogenesis, GO:0031225 - anchored to membrane, GO:0010215 - cellulose microfibril organization, GO:0016021 - integral to membrane		
22984	BC1L3	OsBC1L3	BRITTLE CULM-LIKE 3	BRITTLE CULM1-like 3			3		 Vegetative organ - Culm	Os03g0754500	LOC_Os03g54750.1				GO:0046658 - anchored to plasma membrane, GO:0010215 - cellulose microfibril organization, GO:0009832 - plant-type cell wall biogenesis, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009664 - plant-type cell wall organization		
22985	BC1L4	OsBC1L4	BRITTLE CULM-LIKE 4	BRITTLE CULM1-like 4			5	Q60E70.	 Vegetative organ - Culm	Os05g0386800	LOC_Os05g32110.4, LOC_Os05g32110.3, LOC_Os05g32110.2, LOC_Os05g32110.1				GO:0016021 - integral to membrane, GO:0009664 - plant-type cell wall organization, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009832 - plant-type cell wall biogenesis, GO:0010215 - cellulose microfibril organization, GO:0046658 - anchored to plasma membrane		
22986	BC1L5	OsBC1L5	BRITTLE CULM-LIKE 5	BRITTLE CULM1-like 5			6		 Vegetative organ - Culm	Os06g0685100	LOC_Os06g47110.1				GO:0031225 - anchored to membrane, GO:0010215 - cellulose microfibril organization, GO:0016021 - integral to membrane		
22987	BC1L6	OsBC1L6	BRITTLE CULM-LIKE 6	BRITTLE CULM1-like 6, Brittle Culm 1-like 6		Osbc1l6	7	Q6Z4G8. TO:0020068: beta-glucan content.	 Vegetative organ - Culm,  Seed	Os07g0604300	LOC_Os07g41310.1				GO:0070492 - oligosaccharide binding, GO:0009960 - endosperm development, GO:0032951 - regulation of beta-glucan biosynthetic process, GO:0005886 - plasma membrane, GO:0046658 - anchored to plasma membrane, GO:0010215 - cellulose microfibril organization, GO:0009832 - plant-type cell wall biogenesis, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009664 - plant-type cell wall organization		PO:0007633 - endosperm development stage , PO:0009010 - seed 
22988	BC1L7	OsBC1L7	BRITTLE CULM-LIKE 7	BRITTLE CULM1-like 7			7	Q6Z4G7.	 Vegetative organ - Culm	Os07g0604400	LOC_Os07g41320.1				GO:0009664 - plant-type cell wall organization, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009832 - plant-type cell wall biogenesis, GO:0010215 - cellulose microfibril organization, GO:0046658 - anchored to plasma membrane		
22989	BC1L9	OsBC1L9	BRITTLE CULM-LIKE 9	BRITTLE CULM1-like 9			10	Q8W3E8.	 Vegetative organ - Culm	Os10g0497700	LOC_Os10g35460.1				GO:0046658 - anchored to plasma membrane, GO:0010215 - cellulose microfibril organization, GO:0009832 - plant-type cell wall biogenesis, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009664 - plant-type cell wall organization		
22990	_	OsBC1L2, BC1L2	_	BRITTLE CULM1-like 2			3		 Vegetative organ - Culm	Os03g0416250 	LOC_Os03g30260.1						
22991	PPA6	OsPPa6, PPa6	INORGANIC PYROPHOSPHATASE 6	soluble inorganic pyrophosphatase 6, inorganic pyrophosphatase 6, PPase 6, sPPase 6, pyrophosphorylase 6	INORGANIC PYROPHOSPHATASE 6		2	AtPPa6 homolog. TO:0000975: grain width.	 Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0768600	LOC_Os02g52940.3, LOC_Os02g52940.2, LOC_Os02g52940.1				GO:0006970 - response to osmotic stress, GO:0010446 - response to alkalinity, GO:0005737 - cytoplasm, GO:0006796 - phosphate metabolic process, GO:0000287 - magnesium ion binding, GO:0004427 - inorganic diphosphatase activity	TO:0002627 - fruit width, TO:0000396 - grain yield, TO:0000180 - spikelet fertility, TO:0000442 - plant fresh weight, TO:0000143 - relative biomass, TO:0000207 - plant height, TO:0002673 - amino acid content, TO:0000095 - osmotic response sensitivity, TO:0000525 - sodium to potassium content ratio, TO:0000333 - sugar content, TO:0006002 - proline content, TO:0000696 - starch content, TO:0000328 - sucrose content, TO:0000495 - chlorophyll content, TO:0001027 - net photosynthetic rate, TO:0000481 - alkali sensitivity	
22992	_		_	sPPase, Soluble Inorganic Pyrophosphatase			1		 Biochemical character	Os01g0974800	LOC_Os01g74350.1				GO:0005829 - cytosol, GO:0004427 - inorganic diphosphatase activity, GO:0000287 - magnesium ion binding, GO:0006796 - phosphate metabolic process		
22993	_		_	sPPase, Soluble Inorganic Pyrophosphatase			1		 Biochemical character	Os01g0866500	LOC_Os01g64670.3, LOC_Os01g64670.2, LOC_Os01g64670.1				GO:0006796 - phosphate metabolic process, GO:0000287 - magnesium ion binding, GO:0004427 - inorganic diphosphatase activity, GO:0005829 - cytosol		
22994	_		_	sPPase, Soluble Inorganic Pyrophosphatase			2	Q0DYB1.	 Biochemical character	Os02g0704900	LOC_Os02g47600.2, LOC_Os02g47600.1				GO:0005829 - cytosol, GO:0004427 - inorganic diphosphatase activity, GO:0000287 - magnesium ion binding, GO:0006796 - phosphate metabolic process		
22995	_		_	sPPase, Soluble Inorganic Pyrophosphatase			5		 Biochemical character	Os05g0114000	LOC_Os05g02310.1				GO:0006796 - phosphate metabolic process, GO:0000287 - magnesium ion binding, GO:0004427 - inorganic diphosphatase activity, GO:0005829 - cytosol		
22996	_		_	sPPase, Soluble Inorganic Pyrophosphatase			5		 Biochemical character	Os05g0438500	LOC_Os05g36260.1				GO:0005829 - cytosol, GO:0004427 - inorganic diphosphatase activity, GO:0000287 - magnesium ion binding, GO:0006796 - phosphate metabolic process		
22997	GS1 	OsGS1	GLUTATHIONE SYNTHETASE 1	glutathione synthetase 1	GLUTATHIONE SYNTHETASE 1		11			Os11g0642800	LOC_Os11g42350.3, LOC_Os11g42350.2, LOC_Os11g42350.1				GO:0005829 - cytosol, GO:0042803 - protein homodimerization activity, GO:0000287 - magnesium ion binding, GO:0004363 - glutathione synthase activity, GO:0043295 - glutathione binding, GO:0005524 - ATP binding		
22998	GS3	OsGS3	GLUTATHIONE SYNTHETASE 3	glutathione synthetase 3	GLUTATHIONE SYNTHETASE 3		12			Os12g0528400	LOC_Os12g34380.1				GO:0005524 - ATP binding, GO:0043295 - glutathione binding, GO:0004363 - glutathione synthase activity, GO:0005829 - cytosol		PO:0009006 - shoot system 
22999	GS2	OsGS2	GLUTATHIONE SYNTHETASE 2	glutathione synthetase 2, hydroxymethyl-glutathione synthetase	GLUTATHIONE SYNTHETASE 2		12	EU267952.	 Biochemical character	Os12g0263000	LOC_Os12g16200.1				GO:0005524 - ATP binding, GO:0043295 - glutathione binding, GO:0004363 - glutathione synthase activity, GO:0000287 - magnesium ion binding, GO:0042803 - protein homodimerization activity		PO:0009006 - shoot system 
23000	LC5	OsLC5, OsTTA, TTA	LOW CADMIUM 5	OsTITANIA, TITANIA			3	Q10PC5. an ortholog of the transcriptional regulator Arabidopsis thaliana TITANIA (TTA). a putative Arabidopsis thaliana TITANIA1 (TTA1) and TTA2 ortholog. TO:0020092: copper content trait. TO:0020090: zinc content trait. TO:0020091: manganese content.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os03g0239200	LOC_Os03g13590.1				GO:0005634 - nucleus, GO:0010071 - root meristem specification, GO:0040008 - regulation of growth, GO:0010468 - regulation of gene expression, GO:0055065 - metal ion homeostasis, GO:0010492 - maintenance of shoot apical meristem identity, GO:0010078 - maintenance of root meristem identity, GO:0009880 - embryonic pattern specification, GO:0001708 - cell fate specification, GO:0046872 - metal ion binding	TO:0000346 - tiller number, TO:0000207 - plant height	PO:0000003 - whole plant 
23001	CNX6	OsCNX6	CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 6	cofactor for nitrate reductase and xanthine dehydrogenase 6	CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 6	cnx6, cnx6-06, cnx6-11	2	Q6Z2X3. TO:0020084: spiral leaf.	 Biochemical character,  Vegetative organ - Leaf,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os02g0140300	LOC_Os02g04740.1				GO:0009688 - abscisic acid biosynthetic process, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009845 - seed germination, GO:0048623 - seed germination on parent plant, GO:0019008 - molybdopterin synthase complex, GO:0005829 - cytosol, GO:0032324 - molybdopterin cofactor biosynthetic process, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0030366 - Mo-molybdopterin synthase activity	TO:0000253 - seed dormancy, TO:0000370 - leaf width, TO:0000492 - leaf shape, TO:0002661 - seed maturation, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage , PO:0009010 - seed , PO:0007632 - seed maturation stage 
23002	CNX1	OsCNX1	CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1	cofactor for nitrate reductase and xanthine dehydrogenase 1	CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1		4	TO:0020084: spiral leaf. GO:0061598: molybdopterin adenylyltransferase activity. GO:0061599: molybdopterin molybdotransferase activity.	 Biochemical character,  Vegetative organ - Leaf,  Seed - Physiological traits - Dormancy	Os04g0661600	LOC_Os04g56620.2, LOC_Os04g56620.1				GO:0009688 - abscisic acid biosynthetic process, GO:0010038 - response to metal ion, GO:0009734 - auxin mediated signaling pathway, GO:0008940 - nitrate reductase activity, GO:0030151 - molybdenum ion binding, GO:0005524 - ATP binding, GO:0030366 - Mo-molybdopterin synthase activity, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0032324 - molybdopterin cofactor biosynthetic process, GO:0005829 - cytosol, GO:0048623 - seed germination on parent plant, GO:0009845 - seed germination	TO:0000253 - seed dormancy, TO:0000370 - leaf width, TO:0000492 - leaf shape, TO:0002661 - seed maturation	
23003	BIG	OsBIG	_			Osbig	9	MH464384. B9G2A8. A putative homolog of AtBIG.		Os09g0247700	LOC_Os09g07294.1				GO:0010109 - regulation of photosynthesis, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0046466 - membrane lipid catabolic process, GO:0008219 - cell death, GO:0009506 - plasmodesma, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0005829 - cytosol, GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development, GO:0009734 - auxin mediated signaling pathway, GO:0009926 - auxin polar transport, GO:0008270 - zinc ion binding	TO:0000495 - chlorophyll content, TO:0000357 - growth and development trait, TO:0000084 - root number, TO:0000496 - carotenoid content, TO:0000298 - chlorophyll ratio	
23004	HOP2	OsHOP2	HOMOLOGOUS PAIRING PROTEIN2		HOMOLOGOUS PAIRING PROTEIN2	Oshop2, Oshop2-1, Oshop2-2, Oshop2-3, Oshop2-4	3	GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0710100	LOC_Os03g50220.1				GO:0070193 - synaptonemal complex organization, GO:0000785 - chromatin, GO:0007129 - synapsis, GO:0007131 - reciprocal meiotic recombination, GO:0005634 - nucleus, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
23005	SHOC1	OsSHOC1	SHORTAGE IN CHIASMATA 1	Shortage in chiasmata 1		Osshoc1	2	GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os02g0642600	LOC_Os02g42910.1				GO:0007131 - reciprocal meiotic recombination, GO:0000712 - resolution of meiotic joint molecules as recombinants	TO:0000485 - sterility related trait	
23006	PTD1	OsPTD1	PARTING DANCER 1	Parting Dancer 1		Osptd1	5	GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os05g0588200	LOC_Os05g51060.1				GO:0010845 - positive regulation of reciprocal meiotic recombination, GO:0009555 - pollen development, GO:0048236 - plant-type spore development, GO:0007140 - male meiosis, GO:0000712 - resolution of meiotic joint molecules as recombinants	TO:0000485 - sterility related trait	
23007	TPR1	OsTPR1	TETRATRICOPEPTIDE REPEAT PROTEIN 1	tetratricopeptide repeat protein 1	TETRATRICOPEPTIDE REPEAT PROTEIN 1		10	AK063937.	 Tolerance and resistance - Disease resistance	Os10g0486900	LOC_Os10g34540.1				GO:0010200 - response to chitin, GO:0050832 - defense response to fungus, GO:0051879 - Hsp90 protein binding	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease	
23008	VAMP724	OsVAMP724	VESICLE-ASSOCIATED MEMBRANE PROTEIN 724	vesicle-associated membrane protein 724	VESICLE-ASSOCIATED MEMBRANE PROTEIN 724		7			Os07g0249200 	LOC_Os07g14540.1				GO:0031201 - SNARE complex, GO:0016021 - integral to membrane, GO:0006906 - vesicle fusion, GO:0006887 - exocytosis, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding		
23009	SYP132	OsSYP132	SYNTAXIN OF PLANTS 132	Syntaxin of Plants132	SYNTAXIN OF PLANTS 132		7			Os07g0164300	LOC_Os07g07000.1				GO:0016021 - integral to membrane, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding, GO:0006887 - exocytosis, GO:0048278 - vesicle docking, GO:0006906 - vesicle fusion, GO:0012505 - endomembrane system, GO:0031201 - SNARE complex		PO:0020104 - leaf sheath , PO:0025034 - leaf 
23010	SYP124	OsSYP124	SYNTAXIN OF PLANTS 124	Syntaxin of Plants124	SYNTAXIN OF PLANTS 124		6		 Biochemical character	Os06g0590500	LOC_Os06g39050.1				GO:0016021 - integral to membrane, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding, GO:0006887 - exocytosis, GO:0048278 - vesicle docking, GO:0006906 - vesicle fusion, GO:0012505 - endomembrane system, GO:0031201 - SNARE complex		
23011	SYP125	OsSYP125	SYNTAXIN OF PLANTS 125	Syntaxin of Plants125	SYNTAXIN OF PLANTS 125		2		 Biochemical character	Os02g0209900	LOC_Os02g11890.1				GO:0031201 - SNARE complex, GO:0012505 - endomembrane system, GO:0006906 - vesicle fusion, GO:0048278 - vesicle docking, GO:0006887 - exocytosis, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0005886 - plasma membrane, GO:0006886 - intracellular protein transport, GO:0016021 - integral to membrane		
23012	SYP131	OsSYP131	SYNTAXIN OF PLANTS 131	Syntaxin of Plants131	SYNTAXIN OF PLANTS 131		6		 Biochemical character	Os06g0168500	LOC_Os06g07200.1				GO:0016021 - integral to membrane, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding, GO:0006887 - exocytosis, GO:0048278 - vesicle docking, GO:0006906 - vesicle fusion, GO:0012505 - endomembrane system, GO:0031201 - SNARE complex		
23013	VPE2	OsVPE2	VACUOLAR PHOSPHATE EFFLUX TRANSPORTER 2	vacuolar Pi efflux transporter 2, vacuolar phosphate efflux transporter 2	VACUOLAR PHOSPHATE EFFLUX TRANSPORTER 2	Osvpe2, Osvpe2-1, Osvpe2-2	8	TO:0020102: phosphate content. a vacuolar GlpT protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0156600	LOC_Os08g06010.1				GO:0022857 - transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0042594 - response to starvation, GO:0006817 - phosphate transport		
23014	GLPT1	OsGlpT1, GlpT1	GLYCEROL-3-PHOSPHATE TRANSPORTER 1	GlpT protein 1, Glycerol-3-phosphate transporter 1, G3P transporter 1	GLYCEROL-3-PHOSPHATE TRANSPORTER 1		2		 Biochemical character	Os02g0652800	LOC_Os02g43620.1				GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane, GO:0055062 - phosphate ion homeostasis, GO:0022857 - transmembrane transporter activity		
23015	GLPT2	OsGlpT2, GlpT2	GLYCEROL-3-PHOSPHATE TRANSPORTER 2	GlpT protein 2, Glycerol-3-phosphate transporter 2, G3P transporter 2	GLYCEROL-3-PHOSPHATE TRANSPORTER 2		6		 Biochemical character	Os06g0179900	LOC_Os06g08170.1				GO:0022857 - transmembrane transporter activity, GO:0055062 - phosphate ion homeostasis, GO:0016021 - integral to membrane		
23016	_	AGP, OsAGP	_	Arabinogalactan protein			3	PO:0030123: panicle inflorescence.		Os03g0245300	LOC_Os03g14140.1						
23017	_	AGP, OsAGP	_	Arabinogalactan protein			3	PO:0030123: panicle inflorescence.		Os03g0663900	LOC_Os03g46110.1						
23018	_	AGP, OsAGP	_	Arabinogalactan protein			4	PO:0030123: panicle inflorescence.		Os04g0668300	LOC_Os04g57270.1						
23019	_	AGP, OsAGP	_	Arabinogalactan protein			10	PO:0030123: panicle inflorescence.		Os10g0148700	LOC_Os10g05790.1						PO:0009073 - stigma 
23020	_	AGP, OsAGP	_	Arabinogalactan protein			5	PO:0030123: panicle inflorescence.		Os05g0597700	LOC_Os05g51900.1						PO:0009066 - anther 
23021	_	AGP, OsAGP	_	Arabinogalactan protein			7	PO:0030123: panicle inflorescence.		Os07g0247000	LOC_Os07g14340.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
23022	_	AGP, OsAGP, OsXYLP8, XYLP8	_	Arabinogalactan protein			7	PO:0030123: panicle inflorescence.		Os01g0814100	LOC_Os01g59870.1				GO:0008233 - peptidase activity		PO:0009010 - seed 
23023	_	AGP, OsAGP	_	Arabinogalactan protein			2	PO:0030123: panicle inflorescence.		Os02g0101900	LOC_Os02g01190.2, LOC_Os02g01190.1						PO:0009010 - seed 
23024	_	AGP, OsAGP	_	Arabinogalactan protein			4	PO:0030123: panicle inflorescence.		Os04g0498700	LOC_Os04g42100.1				GO:0009506 - plasmodesma, GO:0009505 - plant-type cell wall, GO:0006979 - response to oxidative stress, GO:0042744 - hydrogen peroxide catabolic process, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		PO:0009010 - seed 
23025	_	AGP, OsAGP	_	Arabinogalactan protein			7	CT836117. 		Os07g0537300	LOC_Os07g35290.1				GO:0016021 - integral to membrane		PO:0009047 - stem , PO:0009005 - root , PO:0009010 - seed 
23026	_	AGP, OsAGP	_	Arabinogalactan protein			7			Os07g0540100	LOC_Os07g35580.1				GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		PO:0025034 - leaf , PO:0009047 - stem , PO:0009010 - seed 
23027	_	AGP, OsAGP	_	Arabinogalactan protein			9	AK371492.		Os09g0364400	LOC_Os09g19970.1				GO:0016021 - integral to membrane		PO:0009005 - root , PO:0025034 - leaf , PO:0009010 - seed 
23028	OSD1	OsOSD1	OMISSION OF SECOND DIVISION 1			Ososd1	2	GO:1904667: negative regulation of ubiquitin protein ligase activity.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0591500	LOC_Os02g37850.2, LOC_Os02g37850.1				GO:0007135 - meiosis II, GO:0005634 - nucleus, GO:0051783 - regulation of nuclear division		
23029	_		_	galactose oxidase/HUP6-like gene			8			Os08g0128000	LOC_Os08g03420.4, LOC_Os08g03420.3, LOC_Os08g03420.2, LOC_Os08g03420.1						
23030	_		_	Dreg-2 like protein/haloacid dehalogenase-like hydrolase domain-containing protein 3			2			Os02g0173600	LOC_Os02g07730.1						
23031	HIR3	OsHIR3	HYPERSENSITIVE INDUCED REACTION 3	hypersensitive induced reaction 3			6		 Tolerance and resistance - Disease resistance	Os06g0136000	LOC_Os06g04460.1				GO:0042742 - defense response to bacterium, GO:0051607 - defense response to virus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009626 - plant-type hypersensitive response	TO:0000175 - bacterial blight disease resistance, TO:0000148 - viral disease resistance	
23032	_	PR5	_	pathogenesis-related gene 5			5			Os05g0538500	LOC_Os05g46110.1				GO:0016021 - integral to membrane, GO:0005576 - extracellular region, GO:0006952 - defense response		
23033	SPL35	OsSPL35	SPOTTED LEAF 35	spotted leaf 35		spl35	3	a CUE (coupling of ubiquitin conjugation to ER degradation) domain-containing protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0205000	LOC_Os03g10750.1				GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0010547 - thylakoid membrane disassembly, GO:0009658 - chloroplast organization, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0031347 - regulation of defense response, GO:0010941 - regulation of cell death, GO:0005783 - endoplasmic reticulum, GO:0005829 - cytosol, GO:0043130 - ubiquitin binding, GO:0006952 - defense response	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000316 - photosynthetic ability, TO:0002715 - chloroplast development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000063 - mimic response	PO:0009049 - inflorescence , PO:0025034 - leaf 
23034	DELTA-COP1 	Delta-COP1	COATOMER SUBUNIT DELTA PROTEIN 1	coatomer subunit delta protein 1	COATOMER SUBUNIT DELTA PROTEIN 1		5	Q0DJA0.	 Tolerance and resistance - Lesion mimic	Os05g0310800					GO:0030137 - COPI-coated vesicle, GO:0000139 - Golgi membrane, GO:0030126 - COPI vesicle coat, GO:0005829 - cytosol, GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER, GO:0015031 - protein transport, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0051645 - Golgi localization	TO:0000063 - mimic response	
23035	DELTA-COP2	Delta-COP2	COATOMER SUBUNIT DELTA PROTEIN 2	coatomer subunit delta protein 2	COATOMER SUBUNIT DELTA PROTEIN 2		5	Q0DJ99.	 Tolerance and resistance - Lesion mimic	Os05g0311000	LOC_Os05g24601.3, LOC_Os05g24601.2, LOC_Os05g24601.1				GO:0030137 - COPI-coated vesicle, GO:0000139 - Golgi membrane, GO:0030126 - COPI vesicle coat, GO:0005829 - cytosol, GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER, GO:0015031 - protein transport, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0051645 - Golgi localization	TO:0000063 - mimic response	
23036	HAN1	OsHAN1	_			HAN102428, HAN1Teqing, han1deltaMYB	11	"CT835686. rice ortholog of AtCYP94B3. \"han\" termed \"chilling\" in Chinese (Mao et al. 2019)."	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0483000	LOC_Os11g29290.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005783 - endoplasmic reticulum, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009409 - response to cold, GO:0005506 - iron ion binding, GO:0020037 - heme binding	TO:0000303 - cold tolerance	PO:0000003 - whole plant 
23037	_		_	Subtilisin/chymotrypsin inhibitor			12		 Biochemical character	Os12g0548700	LOC_Os12g36240.1				GO:0009611 - response to wounding, GO:0004867 - serine-type endopeptidase inhibitor activity		
23038	_		_				3	Similar to Barley stem rust resistance protein.	 Biochemical character	Os03g0126700	LOC_Os03g03500.1				GO:0030001 - metal ion transport, GO:0046872 - metal ion binding		
23039	_		_	lipid transfer protein			10		 Biochemical character	Os10g0169200	LOC_Os10g08780.1						
23040	_		_	plant lipid transfer protein			10		 Biochemical character	Os10g0551700	LOC_Os10g40420.1				GO:0008233 - peptidase activity		
23041	_		_				10	Similar to Thaumatin-like protein.	 Biochemical character	Os10g0146200	LOC_Os10g05600.1				GO:0005576 - extracellular region, GO:0006952 - defense response		
23042	_		_				7	Similar to PR1a protein.	 Biochemical character	Os07g0128800	LOC_Os07g03690.1				GO:0005615 - extracellular space		
23043	_		_				3		 Other	Os03g0815900	LOC_Os03g60130.2, LOC_Os03g60130.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0003746 - translation elongation factor activity		PO:0005052 - plant callus 
23044	VAMP727	OsVAMP727	VESICLE-ASSOCIATED MEMBRANE PROTEIN 727	vesicle-associated membrane protein 727	VESICLE-ASSOCIATED MEMBRANE PROTEIN 727		8			Os08g0558600 	LOC_Os08g44430.2, LOC_Os08g44430.1				GO:0033263 - CORVET complex, GO:0007033 - vacuole organization, GO:0006623 - protein targeting to vacuole, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0006887 - exocytosis, GO:0006906 - vesicle fusion, GO:0016021 - integral to membrane, GO:0031201 - SNARE complex		
23045	VAMP722	OsVAMP722	VESICLE-ASSOCIATED MEMBRANE PROTEIN 722	vesicle-associated membrane protein 722	VESICLE-ASSOCIATED MEMBRANE PROTEIN 722		7			Os07g0194000 	LOC_Os07g09600.1				GO:0031201 - SNARE complex, GO:0016021 - integral to membrane, GO:0006906 - vesicle fusion, GO:0006887 - exocytosis, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding		
23046	VAMP721	OsVAMP721	VESICLE-ASSOCIATED MEMBRANE PROTEIN 721	vesicle-associated membrane protein 721	VESICLE-ASSOCIATED MEMBRANE PROTEIN 721		3			Os03g0803000 	LOC_Os03g58840.1				GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0006887 - exocytosis, GO:0006906 - vesicle fusion, GO:0016021 - integral to membrane, GO:0031201 - SNARE complex		
23047	_		_	circumsporozoite protein precursor			1			Os01g0537250	LOC_Os01g35330.2, LOC_Os01g35330.1						
23048	_		_				8	GO:0102965: alcohol-forming fatty acyl-CoA reductase activity. GO:0035336: long-chain fatty-acyl-CoA metabolic process.	 Biochemical character	Os08g0298700	LOC_Os08g20200.2, LOC_Os08g20200.1				GO:0010345 - suberin biosynthetic process, GO:0006629 - lipid metabolic process, GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity		
23049	_		_				4			Os04g0677600	LOC_Os04g58120.1						
23050	_		_				4			Os04g0528200	LOC_Os04g44600.1						
23051	_		_				3			Os03g0244000	LOC_Os03g14040.3, LOC_Os03g14040.2, LOC_Os03g14040.1				GO:0016021 - integral to membrane		
23052	_		_				3			Os03g0270200	LOC_Os03g16369.2, LOC_Os03g16369.1				GO:0006397 - mRNA processing		
23053	_		_				6			Os06g0103800	LOC_Os06g01440.1				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0010168 - ER body, GO:0005783 - endoplasmic reticulum, GO:0006880 - intracellular sequestering of iron ion, GO:0030026 - cellular manganese ion homeostasis, GO:0005384 - manganese ion transmembrane transporter activity, GO:0005381 - iron ion transmembrane transporter activity		
23054	_		_				7			Os07g0406600	LOC_Os07g22390.2, LOC_Os07g22390.1				GO:0004620 - phospholipase activity, GO:0016021 - integral to membrane		
23055	_		_				5			Os05g0367200	LOC_Os05g30430.2, LOC_Os05g30430.1				GO:0016021 - integral to membrane		
23056	_		_	sterol glucosyltransferase			2		 Biochemical character	Os02g0210800	LOC_Os02g11940.2, LOC_Os02g11940.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008194 - UDP-glycosyltransferase activity		
23057	_		_				2	related to starch and sucrose metabolism (Wang et al. 2019).		Os02g0791450							
23058	_		_				7	related to starch and sucrose metabolism (Wang et al. 2019).		Os07g0551650							
23059	GRF7	OsGRF7	GROWTH-REGULATING FACTOR 7	growth-regulating factor7	GROWTH-REGULATING FACTOR 7		12	BK004862. Q6AWY2. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os12g0484900	LOC_Os12g29980.1, LOC_Os12g29980.2				GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016563 - transcription activator activity, GO:0050832 - defense response to fungus	TO:0000396 - grain yield, TO:0000074 - blast disease	
23060	SPL34	OsSPL34	SPOTTED LEAF 34	spotted leaf 34		spl34	4	GO:0070481: nuclear-transcribed mRNA catabolic process, non-stop decay. GO:0070966: nuclear-transcribed mRNA catabolic process, no-go decay.	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Stress tolerance	Os04g0659900	LOC_Os04g56480.3, LOC_Os04g56480.2, LOC_Os04g56480.1				GO:0012501 - programmed cell death, GO:0009416 - response to light stimulus, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0004519 - endonuclease activity, GO:0005737 - cytoplasm, GO:0032790 - ribosome disassembly, GO:0070651 - nonfunctional rRNA decay, GO:0071025 - RNA surveillance, GO:0043022 - ribosome binding	TO:0000063 - mimic response, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0000075 - light sensitivity, TO:0000447 - filled grain number, TO:0000431 - ear length, TO:0000180 - spikelet fertility, TO:0000592 - 1000-dehulled grain weight, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	
23061	_		_	indole-3-acetate O-methyl- transferase 1-like, jasmonate O-methyltransferase			6		 Biochemical character	Os06g0323100 	LOC_Os06g21820.2, LOC_Os06g21820.1				GO:0009751 - response to salicylic acid stimulus, GO:0008168 - methyltransferase activity, GO:0032259 - methylation, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity		
23062	_		_	glycine-rich RNA-binding protein			4			Os04g0653700  	LOC_Os04g55980.1				GO:0016021 - integral to membrane, GO:0009751 - response to salicylic acid stimulus		
23063	_		_	conserved hypothetical protein			8			Os08g0351300  	LOC_Os08g26230.7, LOC_Os08g26230.6, LOC_Os08g26230.5, LOC_Os08g26230.4, LOC_Os08g26230.3, LOC_Os08g26230.2				GO:0009751 - response to salicylic acid stimulus		
23064	_		_	conserved hypothetical protein			8			Os08g0395700  	LOC_Os08g30510.1				GO:0009751 - response to salicylic acid stimulus		
