ENTRY       zma03013                    Pathway
NAME        Nucleocytoplasmic transport - Zea mays (maize)
DESCRIPTION The exchange of molecules between the nucleus and cytoplasm is mediated through nuclear pore complexes (NPCs) embedded in the nuclear envelope. The NPC is composed of highly conserved, distinct structural modules: the inner pore ring, the cytoplasmic and nuclear rings as well as the cytoplasmic filaments and the nuclear basket. Nuclear transport receptors (e.g. importins and exportins) mediate translocation of cargos through the NPC. Cargo proteins harbouring a nuclear export signal (NES) bind to exportins and Ran-GTP to form an export complex in the nucleoplasm. Nuclear export of bulk mRNA is provided by the non-karyopherin transport proteins TAP-p15 in a Ran-GTP-independent manner. Several EJC factors are known to function in mRNA export.
CLASS       Genetic Information Processing; Translation
PATHWAY_MAP zma03013  Nucleocytoplasmic transport
DBLINKS     GO: 0050658
ORGANISM    Zea mays (maize) [GN:zma]
GENE        100383460  uncharacterized protein LOC100383460 [KO:K14320]
            100281505  uncharacterized protein LOC100281505 [KO:K14321]
            103625787  protein GLE1 isoform X1 [KO:K18723]
            103644232  protein GLE1 [KO:K18723]
            100193503  uncharacterized protein LOC100193503 [KO:K18655] [EC:3.6.4.13]
            100286267  rae1-like protein [KO:K14298]
            100283675  rae1-like protein [KO:K14298]
            100279429  uncharacterized protein LOC100279429 [KO:K14297]
            101202711  uncharacterized protein LOC101202711 [KO:K14297]
            103639534  nuclear pore complex protein NUP96 [KO:K14297]
            100276843  uncharacterized protein LOC100276843 [KO:K14317]
            100272301  uncharacterized protein LOC100272301 isoform 1 [KO:K14318]
            100191507  putative RAN GTPase activating family protein [KO:K14319]
            100381804  uncharacterized protein LOC100381804 [KO:K14319]
            100282735  ubiquitin-conjugating enzyme E2 I [KO:K10577]
            103646037  SUMO-conjugating enzyme SCE1 [KO:K10577]
            100283731  SUMO-conjugating enzyme SCE1 [KO:K10577]
            103637558  SUMO-conjugating enzyme SCE1 [KO:K10577]
            103639085  SUMO-conjugating enzyme SCE1 [KO:K10577]
            100280784  uncharacterized protein LOC100280784 [KO:K10577]
            100304088  ubiquitin-conjugating enzyme E2 I [KO:K10577]
            100381924  uncharacterized protein LOC100381924 [KO:K14304]
            100283879  SEC13-related protein [KO:K14004]
            100282624  SEC13-related protein [KO:K14004]
            100283613  SEC13-related protein [KO:K14004]
            100280047  uncharacterized protein LOC100280047 [KO:K14004]
            100272594  uncharacterized protein LOC100272594 [KO:K14301]
            100384809  uncharacterized protein LOC100384809 [KO:K14300]
            100284280  IDP351; uncharacterized protein LOC100284280 [KO:K14299]
            100382780  uncharacterized protein LOC100382780 [KO:K14306]
            100282882  nucleoporin p58/p45 [KO:K14307]
            100194061  nucleoporin p58/p45 [KO:K14307]
            103645634  nuclear pore complex protein NUP58 [KO:K14307]
            100276495  uncharacterized protein LOC100276495 [KO:K14308]
            103626805  nuclear pore complex protein NUP205 isoform X1 [KO:K14310]
            100279122  uncharacterized protein LOC100279122 [KO:K14311]
            103639423  nuclear pore complex protein NUP155 isoform X1 [KO:K14312]
            103632918  nuclear pore complex protein NUP155 isoform X1 [KO:K14312]
            103634826  nuclear pore complex protein NUP93A [KO:K14309]
            100216910  Nuclear pore complex protein NUP35 [KO:K14313]
            100194358  uncharacterized protein LOC100194358 [KO:K14313]
            100285840  MPPN domain containing protein [KO:K14313]
            100278395  uncharacterized protein LOC100278395 [KO:K14315]
            103628806  uncharacterized protein LOC103628806 [KO:K14315]
            100384390  uncharacterized protein LOC100384390 [KO:K14314]
            100276047  uncharacterized protein LOC100276047 [KO:K20724]
            100276645  uncharacterized protein LOC100276645 [KO:K20724]
            100216801  uncharacterized protein LOC100216801 [KO:K20724]
            100193455  Nuclear-pore anchor [KO:K09291]
            100282153  uncharacterized protein LOC100282153 [KO:K15042]
            100283608  importin alpha-1b subunit [KO:K15042]
            100273684  uncharacterized protein LOC100273684 [KO:K15042]
            100193437  uncharacterized protein LOC100193437 [KO:K15042]
            100281383  importin alpha-2 subunit [KO:K15042]
            100381984  uncharacterized protein LOC100381984 [KO:K14293]
            100383778  uncharacterized protein LOC100383778 [KO:K14293]
            103630277  importin subunit beta-1 [KO:K14293]
            103635758  importin subunit beta-1 [KO:K14293]
            100381988  uncharacterized protein LOC100381988 [KO:K18752]
            100273670  transportin-1 isoform X1 [KO:K18752]
            100382556  uncharacterized protein LOC100382556 [KO:K15436]
            103626170  transportin MOS14 isoform X1 [KO:K15436]
            103654391  transportin MOS14 [KO:K15436]
            100383753  uncharacterized protein LOC100383753 [KO:K20221]
            103633334  importin-5 [KO:K20222]
            100273504  uncharacterized protein LOC100273504 [KO:K20222]
            103655412  importin beta-like SAD2 isoform X1 [KO:K20223]
            100193617  uncharacterized protein LOC100193617 [KO:K20223]
            100384150  uncharacterized protein LOC100384150 [KO:K20224]
            103647957  importin-11 isoform X1 [KO:K25201]
            100384227  uncharacterized protein LOC100384227 [KO:K14290]
            103625708  protein EXPORTIN 1A [KO:K14290]
            103625943  exportin-2 [KO:K18423]
            103643902  exportin-2 [KO:K18423]
            103647839  exportin-T isoform X1 [KO:K14288]
            103633416  exportin-T [KO:K14288]
            103643456  exportin-4 isoform X1 [KO:K25203]
            103635172  protein HASTY 1 isoform X1 [KO:K14289]
            103629871  exportin-7-A isoform X1 [KO:K18460]
            100193260  GTP-binding nuclear protein Ran-A1 [KO:K07936]
            100282843  uncharacterized protein LOC100282843 [KO:K07936]
            100382806  uncharacterized protein LOC100382806 [KO:K07936]
            103637360  GTP-binding nuclear protein Ran1B [KO:K07936]
            103630761  GTP-binding nuclear protein Ran-2 [KO:K07936]
            542581  elongation factor 1-alpha [KO:K03231]
            100037748  elongation factor alpha 2 [KO:K03231]
            542620  elongation factor alpha 3 [KO:K03231]
            542555  elongation factor alpha 5 [KO:K03231]
            103630200  elongation factor 1-alpha-like [KO:K03231]
            100284707  elongation factor 1-alpha [KO:K03231]
            100286309  uncharacterized protein LOC100286309 [KO:K03231]
            103635498  elongation factor 1-alpha-like [KO:K03231]
            103635497  elongation factor 1-alpha [KO:K03231]
            109939177  elongation factor 1-alpha [KO:K03231]
            100278489  uncharacterized protein LOC100278489 [KO:K14291]
            100384700  nuclear cap-binding protein subunit 1 isoform X1 [KO:K12882]
            100280855  uncharacterized protein LOC100280855 [KO:K12883]
            100283725  uncharacterized protein LOC100283725 [KO:K12883]
            100194368  uncharacterized protein LOC100194368 [KO:K07562]
            100501750  nonsense-mediated mRNA decay NMD3 family protein [KO:K07562]
            100502456  nonsense-mediated mRNA decay NMD3 family protein [KO:K07562]
            100280761  RNA-binding protein 8A [KO:K12876]
            100283893  RNA-binding protein 8A [KO:K12876]
            100283928  uncharacterized protein LOC100283928 [KO:K12876]
            100279432  protein mago nashi [KO:K12877]
            100280575  uncharacterized protein LOC100280575 [KO:K12877]
            732749  putative RH2 protein [KO:K13025] [EC:3.6.4.13]
            103627913  eukaryotic initiation factor 4A-III homolog A [KO:K13025] [EC:3.6.4.13]
            100381870  uncharacterized protein LOC100381870 [KO:K12875]
            100502129  uncharacterized protein LOC100502129 isoform X1 [KO:K12875]
            103635858  formin-like protein 5 isoform X2 [KO:K12875]
            100194333  histone deacetylase complex subunit SAP18 [KO:K14324]
            100381502  histone deacetylase complex subunit SAP18 [KO:K14324]
            103636269  uncharacterized protein LOC103636269 [KO:K14325]
            103650711  uncharacterized protein LOC103650711 [KO:K14325]
            100283191  pinin/SDK/memA/ protein conserved region containing protein [KO:K13114]
            100191788  putative pinin_SDK_memA domain family protein [KO:K13114]
            100193488  uncharacterized protein LOC100193488 [KO:K12881]
            100279524  THO complex subunit 4 [KO:K12881]
            100272743  uncharacterized protein LOC100272743 [KO:K12881]
            100280157  THO complex subunit 4C [KO:K12881]
            100278324  uncharacterized protein LOC100278324 [KO:K12881]
            100280336  THO complex subunit 4 [KO:K12881]
            100383288  regulator of nonsense transcripts 1 homolog isoform X1 [KO:K14326] [EC:3.6.4.13 5.6.2.3]
            100304236  uncharacterized protein LOC100304236 [KO:K14326] [EC:3.6.4.13 5.6.2.3]
            103627442  regulator of nonsense transcripts UPF2 [KO:K14327]
            100194141  uncharacterized protein LOC100194141 [KO:K14327]
            103641667  regulator of nonsense transcripts UPF3-like [KO:K14328]
            103646424  regulator of nonsense transcripts UPF3 [KO:K14328]
            100273717  uncharacterized protein LOC100273717 [KO:K12812] [EC:3.6.4.13]
            100384654  uncharacterized protein LOC100384654 [KO:K12812] [EC:3.6.4.13]
            100304415  splicing factor PWI domain-containing protein [KO:K13171]
            100273358  uncharacterized protein LOC100273358 [KO:K14294]
            100283795  PYM protein [KO:K14294]
            100304252  uncharacterized protein LOC100304252 [KO:K12878]
            103652539  THO complex subunit 2 [KO:K12879]
            100191475  uncharacterized protein LOC100191475 [KO:K13174]
            103632647  THO complex subunit 6 [KO:K13175]
            100283954  ngg1 interacting factor 3 like 1 binding protein 1 [KO:K13176]
            103631020  THO complex subunit 7B [KO:K13176]
            100272607  uncharacterized protein LOC100272607 [KO:K12880]
            103637587  uncharacterized WD repeat-containing protein alr3466-like [KO:K12880]
REFERENCE   PMID:16777596
  AUTHORS   Tran EJ, Wente SR
  TITLE     Dynamic nuclear pore complexes: life on the edge.
  JOURNAL   Cell 125:1041-53 (2006)
            DOI:10.1016/j.cell.2006.05.027
REFERENCE   PMID:15519698
  AUTHORS   Rodriguez MS, Dargemont C, Stutz F
  TITLE     Nuclear export of RNA.
  JOURNAL   Biol Cell 96:639-55 (2004)
            DOI:10.1016/j.biolcel.2004.04.014
REFERENCE   PMID:18313922
  AUTHORS   Palancade B, Doye V
  TITLE     Sumoylating and desumoylating enzymes at nuclear pores: underpinning their unexpected duties?
  JOURNAL   Trends Cell Biol 18:174-83 (2008)
            DOI:10.1016/j.tcb.2008.02.001
REFERENCE   PMID:15901496
  AUTHORS   Reed R, Cheng H
  TITLE     TREX, SR proteins and export of mRNA.
  JOURNAL   Curr Opin Cell Biol 17:269-73 (2005)
            DOI:10.1016/j.ceb.2005.04.011
REFERENCE   PMID:16314458
  AUTHORS   Tange TO, Shibuya T, Jurica MS, Moore MJ
  TITLE     Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core.
  JOURNAL   RNA 11:1869-83 (2005)
            DOI:10.1261/rna.2155905
REFERENCE   PMID:28673770
  AUTHORS   Beck M, Schirmacher P, Singer S
  TITLE     Alterations of the nuclear transport system in hepatocellular carcinoma - New basis for therapeutic strategies.
  JOURNAL   J Hepatol 67:1051-1061 (2017)
            DOI:10.1016/j.jhep.2017.06.021
REL_PATHWAY zma03015  mRNA surveillance pathway
KO_PATHWAY  ko03013
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