ENTRY       sly01100                    Pathway
NAME        Metabolic pathways - Solanum lycopersicum (tomato)
PATHWAY_MAP sly01100  Metabolic pathways
MODULE      sly_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sly01100]
            sly_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sly01100]
            sly_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sly01100]
            sly_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sly01100]
            sly_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sly01100]
            sly_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sly01100]
            sly_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sly01100]
            sly_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sly01100]
            sly_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sly01100]
            sly_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sly01100]
            sly_M00012  Glyoxylate cycle [PATH:sly01100]
            sly_M00015  Proline biosynthesis, glutamate => proline [PATH:sly01100]
            sly_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sly01100]
            sly_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sly01100]
            sly_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:sly01100]
            sly_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sly01100]
            sly_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sly01100]
            sly_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:sly01100]
            sly_M00026  Histidine biosynthesis, PRPP => histidine [PATH:sly01100]
            sly_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:sly01100]
            sly_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:sly01100]
            sly_M00034  Methionine salvage pathway [PATH:sly01100]
            sly_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:sly01100]
            sly_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:sly01100]
            sly_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:sly01100]
            sly_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:sly01100]
            sly_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:sly01100]
            sly_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sly01100]
            sly_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sly01100]
            sly_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sly01100]
            sly_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sly01100]
            sly_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sly01100]
            sly_M00055  N-glycan precursor biosynthesis [PATH:sly01100]
            sly_M00072  N-glycosylation by oligosaccharyltransferase [PATH:sly01100]
            sly_M00073  N-glycan precursor trimming [PATH:sly01100]
            sly_M00081  Pectin degradation [PATH:sly01100]
            sly_M00082  Fatty acid biosynthesis, initiation [PATH:sly01100]
            sly_M00083  Fatty acid biosynthesis, elongation [PATH:sly01100]
            sly_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:sly01100]
            sly_M00087  beta-Oxidation [PATH:sly01100]
            sly_M00089  Triacylglycerol biosynthesis [PATH:sly01100]
            sly_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:sly01100]
            sly_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:sly01100]
            sly_M00097  beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:sly01100]
            sly_M00098  Acylglycerol degradation [PATH:sly01100]
            sly_M00100  Sphingosine degradation [PATH:sly01100]
            sly_M00112  Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:sly01100]
            sly_M00113  Jasmonic acid biosynthesis [PATH:sly01100]
            sly_M00114  Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:sly01100]
            sly_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sly01100]
            sly_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:sly01100]
            sly_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:sly01100]
            sly_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:sly01100]
            sly_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:sly01100]
            sly_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sly01100]
            sly_M00132  Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:sly01100]
            sly_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:sly01100]
            sly_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:sly01100]
            sly_M00138  Flavonoid biosynthesis, naringenin => pelargonidin [PATH:sly01100]
            sly_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:sly01100]
            sly_M00166  Reductive pentose phosphate cycle, ribulose-5P => glyceraldehyde-3P [PATH:sly01100]
            sly_M00167  Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P [PATH:sly01100]
            sly_M00168  CAM (Crassulacean acid metabolism), dark [PATH:sly01100]
            sly_M00169  CAM (Crassulacean acid metabolism), light [PATH:sly01100]
            sly_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:sly01100]
            sly_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:sly01100]
            sly_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:sly01100]
            sly_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sly01100]
            sly_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:sly01100]
            sly_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:sly01100]
            sly_M00371  Castasterone biosynthesis, campesterol => castasterone [PATH:sly01100]
            sly_M00372  Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:sly01100]
            sly_M00415  Fatty acid elongation in endoplasmic reticulum [PATH:sly01100]
            sly_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sly01100]
            sly_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:sly01100]
            sly_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:sly01100]
            sly_M00532  Photorespiration [PATH:sly01100]
            sly_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:sly01100]
            sly_M00555  Betaine biosynthesis, choline => betaine [PATH:sly01100]
            sly_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sly01100]
            sly_M00844  Arginine biosynthesis, ornithine => arginine [PATH:sly01100]
            sly_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:sly01100]
            sly_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sly01100]
            sly_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sly01100]
            sly_M00882  Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:sly01100]
            sly_M00892  UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:sly01100]
            sly_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:sly01100]
            sly_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:sly01100]
            sly_M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:sly01100]
            sly_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:sly01100]
            sly_M00917  Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:sly01100]
            sly_M00927  Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:sly01100]
            sly_M00928  Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:sly01100]
            sly_M00932  Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:sly01100]
            sly_M00933  Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:sly01100]
            sly_M00936  Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin [PATH:sly01100]
            sly_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sly01100]
ORGANISM    Solanum lycopersicum (tomato) [GN:sly]
REL_PATHWAY sly00010  Glycolysis / Gluconeogenesis
            sly00020  Citrate cycle (TCA cycle)
            sly00030  Pentose phosphate pathway
            sly00040  Pentose and glucuronate interconversions
            sly00051  Fructose and mannose metabolism
            sly00052  Galactose metabolism
            sly00053  Ascorbate and aldarate metabolism
            sly00061  Fatty acid biosynthesis
            sly00062  Fatty acid elongation
            sly00071  Fatty acid degradation
            sly00073  Cutin, suberine and wax biosynthesis
            sly00100  Steroid biosynthesis
            sly00130  Ubiquinone and other terpenoid-quinone biosynthesis
            sly00190  Oxidative phosphorylation
            sly00195  Photosynthesis
            sly00196  Photosynthesis - antenna proteins
            sly00220  Arginine biosynthesis
            sly00230  Purine metabolism
            sly00232  Caffeine metabolism
            sly00240  Pyrimidine metabolism
            sly00250  Alanine, aspartate and glutamate metabolism
            sly00260  Glycine, serine and threonine metabolism
            sly00261  Monobactam biosynthesis
            sly00270  Cysteine and methionine metabolism
            sly00280  Valine, leucine and isoleucine degradation
            sly00290  Valine, leucine and isoleucine biosynthesis
            sly00300  Lysine biosynthesis
            sly00310  Lysine degradation
            sly00330  Arginine and proline metabolism
            sly00340  Histidine metabolism
            sly00350  Tyrosine metabolism
            sly00360  Phenylalanine metabolism
            sly00380  Tryptophan metabolism
            sly00400  Phenylalanine, tyrosine and tryptophan biosynthesis
            sly00410  beta-Alanine metabolism
            sly00430  Taurine and hypotaurine metabolism
            sly00440  Phosphonate and phosphinate metabolism
            sly00450  Selenocompound metabolism
            sly00460  Cyanoamino acid metabolism
            sly00470  D-Amino acid metabolism
            sly00480  Glutathione metabolism
            sly00500  Starch and sucrose metabolism
            sly00510  N-Glycan biosynthesis
            sly00511  Other glycan degradation
            sly00513  Various types of N-glycan biosynthesis
            sly00514  Other types of O-glycan biosynthesis
            sly00520  Amino sugar and nucleotide sugar metabolism
            sly00531  Glycosaminoglycan degradation
            sly00543  Exopolysaccharide biosynthesis
            sly00561  Glycerolipid metabolism
            sly00562  Inositol phosphate metabolism
            sly00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
            sly00564  Glycerophospholipid metabolism
            sly00565  Ether lipid metabolism
            sly00590  Arachidonic acid metabolism
            sly00591  Linoleic acid metabolism
            sly00592  alpha-Linolenic acid metabolism
            sly00600  Sphingolipid metabolism
            sly00601  Glycosphingolipid biosynthesis - lacto and neolacto series
            sly00603  Glycosphingolipid biosynthesis - globo and isoglobo series
            sly00604  Glycosphingolipid biosynthesis - ganglio series
            sly00620  Pyruvate metabolism
            sly00630  Glyoxylate and dicarboxylate metabolism
            sly00640  Propanoate metabolism
            sly00650  Butanoate metabolism
            sly00660  C5-Branched dibasic acid metabolism
            sly00670  One carbon pool by folate
            sly00710  Carbon fixation in photosynthetic organisms
            sly00730  Thiamine metabolism
            sly00740  Riboflavin metabolism
            sly00750  Vitamin B6 metabolism
            sly00760  Nicotinate and nicotinamide metabolism
            sly00770  Pantothenate and CoA biosynthesis
            sly00780  Biotin metabolism
            sly00785  Lipoic acid metabolism
            sly00790  Folate biosynthesis
            sly00860  Porphyrin metabolism
            sly00900  Terpenoid backbone biosynthesis
            sly00902  Monoterpenoid biosynthesis
            sly00903  Limonene and pinene degradation
            sly00904  Diterpenoid biosynthesis
            sly00905  Brassinosteroid biosynthesis
            sly00906  Carotenoid biosynthesis
            sly00908  Zeatin biosynthesis
            sly00909  Sesquiterpenoid and triterpenoid biosynthesis
            sly00910  Nitrogen metabolism
            sly00920  Sulfur metabolism
            sly00940  Phenylpropanoid biosynthesis
            sly00941  Flavonoid biosynthesis
            sly00942  Anthocyanin biosynthesis
            sly00943  Isoflavonoid biosynthesis
            sly00944  Flavone and flavonol biosynthesis
            sly00950  Isoquinoline alkaloid biosynthesis
            sly00960  Tropane, piperidine and pyridine alkaloid biosynthesis
            sly00965  Betalain biosynthesis
            sly00966  Glucosinolate biosynthesis
            sly00996  Biosynthesis of various alkaloids
            sly00999  Biosynthesis of various plant secondary metabolites
            sly01040  Biosynthesis of unsaturated fatty acids
KO_PATHWAY  ko01100
///
