ENTRY       sly00970                    Pathway
NAME        Aminoacyl-tRNA biosynthesis - Solanum lycopersicum (tomato)
CLASS       Genetic Information Processing; Translation
PATHWAY_MAP sly00970  Aminoacyl-tRNA biosynthesis
ORGANISM    Solanum lycopersicum (tomato) [GN:sly]
GENE        3950445  trnR-UCU; tRNA-Arg [KO:K14219]
            3950419  trnR-ACG; tRNA-Arg [KO:K14219]
            3950495  trnR-ACG; tRNA-Arg [KO:K14219]
            3950418  trnN-GUU; tRNA-Asn [KO:K14220]
            3950500  trnN-GUU; tRNA-Asn [KO:K14220]
            34678275  trnN(GTT); tRNA-Asn [KO:K14220]
            34678285  trnN(GTT); tRNA-Asn [KO:K14220]
            3950449  trnD-GUC; tRNA-Asp [KO:K14221]
            34678272  trnD(GTC); tRNA-Asp [KO:K14221]
            3950416  trnC-GCA; tRNA-Cys [KO:K14222]
            34678284  trnC(GCA); tRNA-Cys [KO:K14222]
            3950503  trnQ-UUG; tRNA-Gln [KO:K14223]
            34678258  trnQ(TTG); tRNA-Gln [KO:K14223]
            34678282  trnQ(TTG); tRNA-Gln [KO:K14223]
            3950505  trnE-UUC; tRNA-Glu [KO:K14224]
            34678305  trnE(TTC); pseudogene [KO:K14224]
            34678320  trnE(TTC); tRNA-Glu [KO:K14224]
            3950504  trnG-GCC; tRNA-Gly [KO:K14225]
            34678259  trnG-GCC; tRNA-Gly [KO:K14225]
            34678283  trnG(GCC); tRNA-Gly [KO:K14225]
            3950446  trnG-GCC; tRNA-Gly [KO:K14225]
            3950490  trnH-GUG; tRNA-His [KO:K14226]
            34678296  trnH; tRNA-His [KO:K14226]
            3950494  trnI-GAU; tRNA-Ile [KO:K14227]
            16976777  trnL-CAA; tRNA-Leu [KO:K14228]
            3950498  trnL-CAA; tRNA-Leu [KO:K14228]
            3950502  trnL-UAA; tRNA-Leu [KO:K14228]
            3950443  trnL-UAG; tRNA-Leu [KO:K14228]
            3950499  trnK-UUU; tRNA-Lys [KO:K14229]
            3950448  trnK-UUU; tRNA-Lys [KO:K14229]
            34678295  trnK-TTT; tRNA-Lys [KO:K14229]
            3950491  trnA-UGC; tRNA-Ala [KO:K14230]
            3950414  trnfM-CAU; tRNA-Met [KO:K14230]
            3950493  trnM-CAU; tRNA-Met [KO:K14230]
            3950444  trnI-CAU; tRNA-Ile [KO:K14230]
            16976778  trnI-CAU; tRNA-Ile [KO:K14230]
            34678260  trnM(CAT); tRNA-Met [KO:K14230]
            34678277  trnL(CAA); tRNA-Leu [KO:K14230]
            34678287  trnM(CAT); tRNA-Met [KO:K14230]
            34678301  trnI(CAT); tRNA-Met [KO:K14230]
            34678315  trnI(CAT); tRNA-Met [KO:K14230]
            34678324  trnI(CAT); tRNA-Met [KO:K14230]
            34678326  trnM(CAT); tRNA-Met [KO:K14230]
            3950492  trnF-GAA; tRNA-Phe [KO:K14231]
            34678291  trnF(GAA); tRNA-Phe [KO:K14231]
            3950440  trnP-UGG; tRNA-Pro [KO:K14232]
            34678292  trnP(TGG); tRNA-Pro [KO:K14232]
            34678298  trnP(TGG); tRNA-Pro [KO:K14232]
            3950489  trnS-GCU; tRNA-Ser [KO:K14233]
            3950447  trnS-UGA; tRNA-Ser [KO:K14233]
            3950497  trnS-GGA; tRNA-Ser [KO:K14233]
            34678290  trnS(GCT); tRNA-Ser [KO:K14233]
            34678273  trnS(TGA); tRNA-Ser [KO:K14233]
            34678271  trnS(GGA); tRNA-Ser [KO:K14233]
            3950488  trnT-GGU; tRNA-Thr [KO:K14234]
            3950501  trnT-UGU; tRNA-Thr [KO:K14234]
            3950438  trnW-CCA; tRNA-Trp [KO:K14235]
            34678299  trnW(CCA); tRNA-Trp [KO:K14235]
            3950506  trnY-GUA; tRNA-Tyr [KO:K14236]
            34678286  trnY(GTA); tRNA-Tyr [KO:K14236]
            3950417  trnV-UAC; tRNA-Val [KO:K14237]
            16976783  trnV-GAC; tRNA-Val [KO:K14237]
            3950441  trnV-GAC; tRNA-Val [KO:K14237]
            101259201  glutamate--tRNA ligase, chloroplastic/mitochondrial [KO:K01885] [EC:6.1.1.17]
            101244420  glutamate--tRNA ligase, cytoplasmic [KO:K01885] [EC:6.1.1.17]
            101249307  glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [KO:K02433] [EC:6.3.5.6 6.3.5.7]
            101268142  glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [KO:K02434] [EC:6.3.5.6 6.3.5.7]
            101255220  glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [KO:K02435] [EC:6.3.5.6 6.3.5.7]
            101251979  glutamine--tRNA ligase isoform X1 [KO:K01886] [EC:6.1.1.18]
            101251229  alanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01872] [EC:6.1.1.7]
            101244561  alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
            101247918  aspartate--tRNA ligase 2, cytoplasmic [KO:K22503] [EC:6.1.1.12]
            101259000  aspartate--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01876] [EC:6.1.1.12]
            101254276  asparagine--tRNA ligase, chloroplastic/mitochondrial [KO:K01893] [EC:6.1.1.22]
            101267264  asparagine--tRNA ligase, cytoplasmic 2 [KO:K01893] [EC:6.1.1.22]
            543755  ats1; putative asparaginyl-tRNA synthetase [KO:K01893] [EC:6.1.1.22]
            101257430  glycine--tRNA ligase, mitochondrial 1-like [KO:K01880] [EC:6.1.1.14]
            101268375  glycine--tRNA ligase, mitochondrial 1 [KO:K01880] [EC:6.1.1.14]
            101256217  glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [KO:K14164] [EC:6.1.1.14]
            101257168  threonine--tRNA ligase, mitochondrial 1 [KO:K01868] [EC:6.1.1.3]
            101249471  threonine--tRNA ligase, chloroplastic/mitochondrial 2 [KO:K01868] [EC:6.1.1.3]
            101244106  threonine--tRNA ligase, mitochondrial 1-like [KO:K01868] [EC:6.1.1.3]
            101263161  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
            101263605  serine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01875] [EC:6.1.1.11]
            101251377  cysteine--tRNA ligase 2, cytoplasmic isoform X2 [KO:K01883] [EC:6.1.1.16]
            101256769  cysteine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01883] [EC:6.1.1.16]
            101260937  methionine--tRNA ligase, chloroplastic/mitochondrial [KO:K01874] [EC:6.1.1.10]
            101263723  methionine--tRNA ligase, cytoplasmic [KO:K01874] [EC:6.1.1.10]
            101261082  uncharacterized protein LOC101261082 isoform X1 [KO:K00604] [EC:2.1.2.9]
            101264294  valine--tRNA ligase, chloroplastic/mitochondrial 2 [KO:K01873] [EC:6.1.1.9]
            101250918  valine--tRNA ligase, mitochondrial 1 [KO:K01873] [EC:6.1.1.9]
            101260692  leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
            101246305  leucine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [KO:K01869] [EC:6.1.1.4]
            101251146  LOW QUALITY PROTEIN: leucine--tRNA ligase, cytoplasmic-like [KO:K01869] [EC:6.1.1.4]
            101249760  isoleucine--tRNA ligase, chloroplastic/mitochondrial [KO:K01870] [EC:6.1.1.5]
            101253854  isoleucine--tRNA ligase, cytoplasmic [KO:K01870] [EC:6.1.1.5]
            101243628  lysine--tRNA ligase, chloroplastic/mitochondrial [KO:K04567] [EC:6.1.1.6]
            778357  LysRS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
            101251001  lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
            101261392  arginine--tRNA ligase, cytoplasmic isoform X1 [KO:K01887] [EC:6.1.1.19]
            101250341  proline--tRNA ligase, chloroplastic/mitochondrial [KO:K01881] [EC:6.1.1.15]
            101262197  proline--tRNA ligase, cytoplasmic-like isoform X2 [KO:K01881] [EC:6.1.1.15]
            101260238  proline--tRNA ligase, cytoplasmic [KO:K01881] [EC:6.1.1.15]
            101251038  histidine--tRNA ligase, cytoplasmic [KO:K01892] [EC:6.1.1.21]
            101267504  histidine--tRNA ligase, chloroplastic/mitochondrial [KO:K01892] [EC:6.1.1.21]
            101268820  phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like [KO:K01889] [EC:6.1.1.20]
            101247618  phenylalanine--tRNA ligase, chloroplastic/mitochondrial [KO:K01889] [EC:6.1.1.20]
            101266074  phenylalanine--tRNA ligase alpha subunit, cytoplasmic [KO:K01889] [EC:6.1.1.20]
            101268498  phenylalanine--tRNA ligase beta subunit, cytoplasmic [KO:K01890] [EC:6.1.1.20]
            101247470  tyrosine--tRNA ligase 1, cytoplasmic [KO:K01866] [EC:6.1.1.1]
            101255211  tyrosine--tRNA ligase, chloroplastic/mitochondrial [KO:K01866] [EC:6.1.1.1]
            101244069  tryptophan--tRNA ligase, chloroplastic/mitochondrial [KO:K01867] [EC:6.1.1.2]
            101246271  tryptophan--tRNA ligase, cytoplasmic [KO:K01867] [EC:6.1.1.2]
COMPOUND    C00025  L-Glutamate
            C00037  Glycine
            C00041  L-Alanine
            C00047  L-Lysine
            C00049  L-Aspartate
            C00062  L-Arginine
            C00064  L-Glutamine
            C00065  L-Serine
            C00073  L-Methionine
            C00078  L-Tryptophan
            C00079  L-Phenylalanine
            C00082  L-Tyrosine
            C00097  L-Cysteine
            C00101  Tetrahydrofolate
            C00123  L-Leucine
            C00135  L-Histidine
            C00148  L-Proline
            C00152  L-Asparagine
            C00183  L-Valine
            C00188  L-Threonine
            C00234  10-Formyltetrahydrofolate
            C00407  L-Isoleucine
            C00886  L-Alanyl-tRNA
            C01005  O-Phospho-L-serine
            C01931  L-Lysyl-tRNA
            C02047  L-Leucyl-tRNA
            C02163  L-Arginyl-tRNA(Arg)
            C02282  Glutaminyl-tRNA
            C02412  Glycyl-tRNA(Gly)
            C02430  L-Methionyl-tRNA
            C02553  L-Seryl-tRNA(Ser)
            C02554  L-Valyl-tRNA(Val)
            C02702  L-Prolyl-tRNA(Pro)
            C02839  L-Tyrosyl-tRNA(Tyr)
            C02984  L-Aspartyl-tRNA(Asp)
            C02987  L-Glutamyl-tRNA(Glu)
            C02988  L-Histidyl-tRNA(His)
            C02992  L-Threonyl-tRNA(Thr)
            C03125  L-Cysteinyl-tRNA(Cys)
            C03127  L-Isoleucyl-tRNA(Ile)
            C03294  N-Formylmethionyl-tRNA
            C03402  L-Asparaginyl-tRNA(Asn)
            C03511  L-Phenylalanyl-tRNA(Phe)
            C03512  L-Tryptophanyl-tRNA(Trp)
            C06112  L-Glutamyl-tRNA(Gln)
            C06113  L-Aspartyl-tRNA(Asn)
            C06481  L-Seryl-tRNA(Sec)
            C06482  L-Selenocysteinyl-tRNA(Sec)
            C16138  L-Pyrrolysine
            C16638  O-Phosphoseryl-tRNA(Sec)
            C17022  O-Phosphoseryl-tRNA(Cys)
            C17027  L-Pyrrolysyl-tRNA(Pyl)
REFERENCE   PMID:18252769
  AUTHORS   Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  TITLE     From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  JOURNAL   Nucleic Acids Res 36:1813-25 (2008)
            DOI:10.1093/nar/gkn015
REFERENCE   PMID:15314242
  AUTHORS   Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  TITLE     An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  JOURNAL   Proc Natl Acad Sci U S A 101:12450-4 (2004)
            DOI:10.1073/pnas.0405362101
REL_PATHWAY sly00250  Alanine, aspartate and glutamate metabolism
            sly00260  Glycine, serine and threonine metabolism
            sly00270  Cysteine and methionine metabolism
            sly00290  Valine, leucine and isoleucine biosynthesis
            sly00300  Lysine biosynthesis
            sly00330  Arginine and proline metabolism
            sly00340  Histidine metabolism
            sly00380  Tryptophan metabolism
            sly00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO_PATHWAY  ko00970
///
