ENTRY       sly00630                    Pathway
NAME        Glyoxylate and dicarboxylate metabolism - Solanum lycopersicum (tomato)
CLASS       Metabolism; Carbohydrate metabolism
PATHWAY_MAP sly00630  Glyoxylate and dicarboxylate metabolism
MODULE      sly_M00012  Glyoxylate cycle [PATH:sly00630]
            sly_M00532  Photorespiration [PATH:sly00630]
DBLINKS     GO: 0046487 0043648
ORGANISM    Solanum lycopersicum (tomato) [GN:sly]
GENE        544276  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
            101256234  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
            101264442  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
            101265715  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            101259973  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            101263993  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
            101267103  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
            101267395  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
            101253131  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
            778330  cMDH; cytosolic malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
            101249428  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
            101258932  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
            101258530  mMDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
            778285  mMDH1; mitochondrial malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
            778286  gMDH; glyoxisomal malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
            101248141  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
            101249011  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
            101260902  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
            101258079  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
            101248455  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            101254008  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            101256172  probable acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
            101260435  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            101262830  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            101256164  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X2 [KO:K11517] [EC:1.1.3.15]
            101255570  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
            101255867  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
            101246162  (S)-2-hydroxy-acid oxidase GLO1 isoform X2 [KO:K11517] [EC:1.1.3.15]
            100134875  GLO2; glycolate oxidase [KO:K11517] [EC:1.1.3.15]
            544106  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
            101259333  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
            543990  cat1; catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
            543585  CAT2; catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
            101251910  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
            101263391  uncharacterized protein LOC101263391 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
            100147724  SSR1; succinic semialdehyde reductase isofom1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            100147725  SSR2; succinic semialdehyde reductase isoform2 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            100191110  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
            101255287  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            101249417  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            3950460  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
            543973  rbcS1; ribulose bisphosphate carboxylase small subunit, chloroplastic 1 [KO:K01602] [EC:4.1.1.39]
            543974  ribulose bisphosphate carboxylase small subunit, chloroplastic 2 [KO:K01602] [EC:4.1.1.39]
            101268337  RBCS4; ribulose bisphosphate carboxylase small subunit, chloroplastic 4 [KO:K01602] [EC:4.1.1.39]
            101257875  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
            101055519  Hop-interacting protein THI032 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
            101251709  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
            101265236  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
            101246028  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
            101261030  glutamine synthetase-like isoform X1 [KO:K01915] [EC:6.3.1.2]
            544275  GS1; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
            101248274  glutamine synthetase cytosolic isozyme-like isoform X1 [KO:K01915] [EC:6.3.1.2]
            543998  GS2; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
            543756  gts1; glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
            101250548  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
            101254439  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
            101256090  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
            101264818  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
            101259725  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
            101267301  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
            101263138  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
            101260070  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
            101249137  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
            101245293  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
            101246429  dihydrolipoyl dehydrogenase 1, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
            101245444  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
            544237  dihydrolipoamide dehydrogenase precursor [KO:K00382] [EC:1.8.1.4]
            101257194  ADH11A4a; glycine cleavage system H protein, mitochondrial [KO:K02437]
            101258615  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
            101244882  glycine cleavage system H protein, mitochondrial [KO:K02437]
            101244755  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
            544250  fdh; formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
            101251299  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
            101259867  formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
            101258424  uncharacterized protein LOC101258424 isoform X1 [KO:K01455] [EC:3.5.1.49]
            101251259  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
            101265548  oxalate--CoA ligase isoform X1 [KO:K22133] [EC:6.2.1.8]
COMPOUND    C00007  Oxygen
            C00011  CO2
            C00014  Ammonia
            C00022  Pyruvate
            C00024  Acetyl-CoA
            C00025  L-Glutamate
            C00026  2-Oxoglutarate
            C00027  Hydrogen peroxide
            C00033  Acetate
            C00036  Oxaloacetate
            C00037  Glycine
            C00042  Succinate
            C00048  Glyoxylate
            C00058  Formate
            C00064  L-Glutamine
            C00065  L-Serine
            C00091  Succinyl-CoA
            C00100  Propanoyl-CoA
            C00111  Glycerone phosphate
            C00136  Butanoyl-CoA
            C00149  (S)-Malate
            C00158  Citrate
            C00160  Glycolate
            C00168  Hydroxypyruvate
            C00197  3-Phospho-D-glycerate
            C00209  Oxalate
            C00258  D-Glycerate
            C00266  Glycolaldehyde
            C00311  Isocitrate
            C00313  Oxalyl-CoA
            C00332  Acetoacetyl-CoA
            C00417  cis-Aconitate
            C00552  meso-Tartaric acid
            C00631  2-Phospho-D-glycerate
            C00683  (S)-Methylmalonyl-CoA
            C00798  Formyl-CoA
            C00877  Crotonoyl-CoA
            C00888  Pentanoyl-CoA
            C00898  (R,R)-Tartaric acid
            C00975  Dihydroxyfumarate
            C00988  2-Phosphoglycolate
            C01127  4-Hydroxy-2-oxoglutarate
            C01146  2-Hydroxy-3-oxopropanoate
            C01182  D-Ribulose 1,5-bisphosphate
            C01213  (R)-Methylmalonyl-CoA
            C01380  Ethylene glycol
            C01732  Mesaconate
            C01989  3-Ethylmalate
            C01990  3-Oxalomalate
            C02123  3-Propylmalate
            C02405  Formyl phosphate
            C03217  2-Hydroxy-3-oxoadipate
            C03459  2-Hydroxy-3-oxosuccinate
            C03548  trans-2,3-Epoxysuccinate
            C03561  (R)-3-Hydroxybutanoyl-CoA
            C03618  L-threo-3-Methylaspartate
            C04348  L-Malyl-CoA
            C06027  L-erythro-3-Methylmalyl-CoA
            C06028  2-Methylfumaryl-CoA
            C06049  N-Formylderivatives
            C18026  (2S)-Ethylmalonyl-CoA
            C18324  (2S)-Methylsuccinyl-CoA
            C20238  (2R)-Ethylmalonyl-CoA
            C22337  D-Ribulose 1-phosphate
REFERENCE   PMID:10978349
  AUTHORS   Njau RK, Herndon CA, Hawes JW.
  TITLE     Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  JOURNAL   J Biol Chem 275:38780-6 (2000)
            DOI:10.1074/jbc.M007432200
REFERENCE   PMID:18065535
  AUTHORS   Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  TITLE     Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  JOURNAL   J Bacteriol 190:1366-74 (2008)
            DOI:10.1128/JB.01621-07
REFERENCE   PMID:18819910
  AUTHORS   Erb TJ, Retey J, Fuchs G, Alber BE
  TITLE     Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  JOURNAL   J Biol Chem 283:32283-93 (2008)
            DOI:10.1074/jbc.M805527200
REFERENCE   PMID:9596633
  AUTHORS   Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  TITLE     Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  JOURNAL   Plant Cell 10:741-52 (1998)
            DOI:10.1105/tpc.10.5.741
REFERENCE   PMID:16407450
  AUTHORS   Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  TITLE     Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  JOURNAL   Plant Physiol 140:444-56 (2006)
            DOI:10.1104/pp.105.071910
REFERENCE   PMID:21252347
  AUTHORS   Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  TITLE     A methylaspartate cycle in haloarchaea.
  JOURNAL   Science 331:334-7 (2011)
            DOI:10.1126/science.1196544
REFERENCE   PMID:11513957
  AUTHORS   Serrano JA, Bonete MJ
  TITLE     Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  JOURNAL   Biochim Biophys Acta 1520:154-62 (2001)
            DOI:10.1016/S0167-4781(01)00263-9
REL_PATHWAY sly00010  Glycolysis / Gluconeogenesis
            sly00020  Citrate cycle (TCA cycle)
            sly00030  Pentose phosphate pathway
            sly00053  Ascorbate and aldarate metabolism
            sly00071  Fatty acid degradation
            sly00230  Purine metabolism
            sly00250  Alanine, aspartate and glutamate metabolism
            sly00260  Glycine, serine and threonine metabolism
            sly00620  Pyruvate metabolism
            sly00710  Carbon fixation in photosynthetic organisms
            sly00750  Vitamin B6 metabolism
            sly00910  Nitrogen metabolism
KO_PATHWAY  ko00630
///
