ENTRY       sly00195                    Pathway
NAME        Photosynthesis - Solanum lycopersicum (tomato)
DESCRIPTION Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
CLASS       Metabolism; Energy metabolism
PATHWAY_MAP sly00195  Photosynthesis
MODULE      sly_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:sly00195]
            sly_M00161  Photosystem II [PATH:sly00195]
            sly_M00163  Photosystem I [PATH:sly00195]
ORGANISM    Solanum lycopersicum (tomato) [GN:sly]
GENE        3950408  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
            3950388  psbB; photosystem II CP47 chlorophyll apoprotein [KO:K02704]
            3950405  psbC; photosystem II CP43 chlorophyll apoprotein [KO:K02705]
            3950483  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
            3950399  psbE; photosystem II cytochrome b559 alpha subunit [KO:K02707]
            3950450  psbF; photosystem II cytochrome b559 beta subunit [KO:K02708]
            3950407  psbH; photosystem II phosphoprotein [KO:K02709]
            3950390  psbI; photosystem II protein I [KO:K02710]
            3950394  psbJ; photosystem II protein J [KO:K02711]
            3950386  psbK; photosystem II protein K [KO:K02712]
            3950454  psbL; photosystem II protein L [KO:K02713]
            3950485  psbM; photosystem II protein M [KO:K02714]
            101258321  OEE1; oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
            544299  PSBO; oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
            101252409  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
            544077  PSBP; oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
            101259227  photosystem II reaction center PsbP family protein [KO:K02717]
            101249865  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
            543931  PsbQ; photosystem II oxygen-evolving complex protein 3 [KO:K08901]
            101245163  photosynthetic NDH subunit of lumenal location 2, chloroplastic isoform X2 [KO:K08901]
            101252753  photosystem II 10 kDa polypeptide, chloroplastic isoform X1 [KO:K03541]
            778297  PSBR; photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
            101260830  psbS; photosystem II subunit S [KO:K03542]
            3950459  psbT; photosystem II protein T [KO:K02718]
            101245583  photosystem II reaction center W protein, chloroplastic [KO:K02721]
            101257676  photosystem II reaction center W protein, chloroplastic [KO:K02721]
            101259494  photosystem II core complex proteins psbY, chloroplastic [KO:K02723]
            3950482  psbZ; photosystem II protein Z [KO:K02724]
            101263132  LOW QUALITY PROTEIN: photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
            101245880  photosystem II reaction center Psb28 protein [KO:K08903]
            3950484  psaA; photosystem I P700 apoprotein A1 [KO:K02689]
            3950392  psaB; photosystem I P700 apoprotein A2 [KO:K02690]
            3950411  psaC; photosystem I subunit VII [KO:K02691]
            543978  photosystem I reaction center subunit II, chloroplastic [KO:K02692]
            101266666  photosystem I reaction center subunit IV B, chloroplastic [KO:K02693]
            101266426  photosystem I reaction center subunit IV A, chloroplastic [KO:K02693]
            101245421  photosystem I reaction center subunit III, chloroplastic [KO:K02694]
            101245121  photosystem I reaction center subunit III, chloroplastic [KO:K02694]
            101263732  photosystem I reaction center subunit V, chloroplastic [KO:K08905]
            101264609  photosystem I reaction center subunit VI-1, chloroplastic [KO:K02695]
            101244751  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
            101248983  photosystem I reaction center subunit VI-1, chloroplastic-like [KO:K02695]
            3950462  psaI; photosystem I subunit VIII [KO:K02696]
            3950381  psaJ; photosystem I subunit IX [KO:K02697]
            101255222  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
            101265555  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
            101265249  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
            101268297  photosystem I reaction center subunit [KO:K02701]
            101254806  photosystem I subunit O [KO:K14332]
            3950466  petA; cytochrome f [KO:K02634]
            3950400  petB; cytochrome b6 [KO:K02635]
            101243864  cytochrome b6-f complex iron-sulfur subunit, chloroplastic [KO:K02636] [EC:7.1.1.6]
            3950401  petD; cytochrome b6/f complex subunit IV [KO:K02637]
            3950375  petG; cytochrome b6/f complex subunit V [KO:K02640]
            3950487  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
            544053  PETE; plastocyanin, chloroplastic [KO:K02638]
            778301  SEND33; ferredoxin-1, chloroplastic [KO:K02639]
            101248335  ferredoxin [KO:K02639]
            101254454  ferredoxin C 1, chloroplastic [KO:K02639]
            101266472  ferredoxin, root R-B2 [KO:K02639]
            101265784  ferredoxin [KO:K02639]
            101252890  uncharacterized protein LOC101252890 [KO:K02639]
            101245166  ferredoxin, root R-B2 [KO:K02639]
            101259118  ferredoxin, root R-B1 [KO:K02639]
            101247208  ferredoxin, root R-B2-like [KO:K02639]
            101266059  ferredoxin C 2, chloroplastic [KO:K02639]
            101268044  ferredoxin--NADP reductase, root-type isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
            101251845  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like isoform X1 [KO:K02641] [EC:1.18.1.2]
            101261284  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
            101255756  cytochrome c6, chloroplastic [KO:K08906]
            3950391  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
            3950387  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
            101253342  ATP synthase gamma chain, chloroplastic [KO:K02115]
            101257833  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
            3950425  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
            101249084  ATP synthase subunit delta, chloroplastic isoform X3 [KO:K02113]
            101254882  ATP synthase delta chain, chloroplastic [KO:K02113]
            101263124  ATP synthase subunit b', chloroplastic [KO:K02109]
            3950472  atpF; ATP synthase CF0 subunit I [KO:K02109]
            109120519  ATP synthase subunit b', chloroplastic [KO:K02109]
            112940612  uncharacterized protein LOC112940612 [KO:K02109]
            34678268  atp8; ATP synthase subunit 8 [KO:K02109]
            3950479  atpH; ATP synthase CF0 subunit III [KO:K02110]
            3950464  atpI; ATP synthase CF0 subunit IV [KO:K02108]
COMPOUND    C00001  H2O
            C00002  ATP
            C00005  NADPH
            C00006  NADP+
            C00007  Oxygen
            C00008  ADP
            C00009  Orthophosphate
            C00034  Manganese
            C00080  H+
            C02061  Plastoquinone
            C02185  Plastoquinol-1
REFERENCE   PMID:14764885
  AUTHORS   Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  TITLE     Architecture of the photosynthetic oxygen-evolving center.
  JOURNAL   Science 303:1831-8 (2004)
            DOI:10.1126/science.1093087
REFERENCE   PMID:12518057
  AUTHORS   Kamiya N, Shen JR.
  TITLE     Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  JOURNAL   Proc Natl Acad Sci U S A 100:98-103 (2003)
            DOI:10.1073/pnas.0135651100
REFERENCE   PMID:11217865
  AUTHORS   Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  TITLE     Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  JOURNAL   Nature 409:739-743 (2001)
            DOI:10.1038/35055589
REFERENCE   PMID:11418848
  AUTHORS   Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  TITLE     Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  JOURNAL   Nature 411:909-917 (2001)
            DOI:10.1038/35082000
REFERENCE   PMID:11369223
  AUTHORS   Jones MR, Fyfe PK.
  TITLE     Photosynthesis: new light on biological oxygen production.
  JOURNAL   Curr Biol 17:R318-R321 (2001)
            DOI:10.1016/S0960-9822(01)00174-9
REFERENCE   PMID:11914373
  AUTHORS   Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  TITLE     Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  JOURNAL   J Biol Chem 277:20343-54 (2002)
            DOI:10.1074/jbc.M201103200
REL_PATHWAY sly00196  Photosynthesis - antenna proteins
            sly00710  Carbon fixation in photosynthetic organisms
KO_PATHWAY  ko00195
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