ENTRY       osa03060                    Pathway
NAME        Protein export - Oryza sativa japonica (Japanese rice) (RefSeq)
DESCRIPTION The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.
CLASS       Genetic Information Processing; Folding, sorting and degradation
PATHWAY_MAP osa03060  Protein export
DBLINKS     GO: 0043952 0043953
ORGANISM    Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
GENE        4349143  mitochondrial inner membrane protein OXA1-like [KO:K03217]
            4334759  ALBINO3-like protein 1, chloroplastic isoform X1 [KO:K03217]
            4324524  inner membrane protein PPF-1, chloroplastic isoform X1 [KO:K03217]
            4331399  mitochondrial inner membrane protein OXA1-like [KO:K03217]
            4349987  protein translocase subunit SECA2, chloroplastic isoform X1 [KO:K03070] [EC:7.4.2.8]
            4327279  protein translocase subunit SECA1, chloroplastic [KO:K03070] [EC:7.4.2.8]
            4339274  signal recognition particle 54 kDa protein 2 [KO:K03106] [EC:3.6.5.4]
            4324712  signal recognition particle 54 kDa protein 2 [KO:K03106] [EC:3.6.5.4]
            4349809  signal recognition particle 54 kDa protein, chloroplastic [KO:K03106] [EC:3.6.5.4]
            9267495  signal recognition particle 54 kDa protein, chloroplastic [KO:K03106] [EC:3.6.5.4]
            4325387  cell division protein FtsY homolog, chloroplastic [KO:K03110]
            4346811  protein transport protein Sec61 subunit alpha [KO:K10956]
            4332042  protein transport protein Sec61 subunit alpha [KO:K10956]
            4345097  preprotein translocase subunit SECY, chloroplastic [KO:K10956]
            4346809  protein transport protein Sec61 subunit alpha [KO:K10956]
            4347548  protein transport protein Sec61 subunit alpha isoform 2 [KO:K10956]
            107276128  protein transport protein Sec61 subunit alpha-like [KO:K10956]
            107276600  protein transport protein Sec61 subunit alpha-like 1 [KO:K10956]
            4327929  protein transport protein Sec61 subunit beta [KO:K09481]
            9271333  protein transport protein Sec61 subunit beta [KO:K09481]
            9266625  protein transport protein Sec61 subunit beta [KO:K09481]
            9269540  protein transport protein Sec61 subunit beta [KO:K09481]
            4328492  protein transport protein Sec61 subunit gamma [KO:K07342]
            4341707  protein transport protein Sec61 subunit gamma-like [KO:K07342]
            4329219  uncharacterized protein LOC4329219 [KO:K12275]
            4335435  dnaJ protein ERDJ2A [KO:K09540]
            4328075  luminal-binding protein 3 [KO:K09490] [EC:3.6.4.10]
            4339788  luminal-binding protein [KO:K09490] [EC:3.6.4.10]
            4338866  luminal-binding protein 2 [KO:K09490] [EC:3.6.4.10]
            4333877  luminal-binding protein 4 [KO:K09490] [EC:3.6.4.10]
            4340470  luminal-binding protein 4 [KO:K09490] [EC:3.6.4.10]
            9266859  uncharacterized protein LOC9266859 [KO:K09490] [EC:3.6.4.10]
            4344882  luminal-binding protein 2 [KO:K09490] [EC:3.6.4.10]
            4338568  luminal-binding protein 2 [KO:K09490] [EC:3.6.4.10]
            107275251  luminal-binding protein 5-like [KO:K09490] [EC:3.6.4.10]
            4340680  signal recognition particle 9 kDa protein [KO:K03109]
            4337050  signal recognition particle 14 kDa protein isoform X1 [KO:K03104]
            4324904  signal recognition particle subunit SRP72 [KO:K03108]
            4345269  signal recognition particle subunit SRP68 isoform X1 [KO:K03107]
            4340957  signal recognition particle 19 kDa protein [KO:K03105]
            4345847  signal recognition particle receptor subunit alpha [KO:K13431]
            4346082  signal recognition particle receptor subunit beta [KO:K12272]
            4324478  sec-independent protein translocase protein TATC, chloroplastic [KO:K03118]
            4328965  chloroplast processing peptidase isoform X1 [KO:K03100] [EC:3.4.21.89]
            4347239  thylakoidal processing peptidase 1, chloroplastic [KO:K03100] [EC:3.4.21.89]
            4352133  probable signal peptidase complex subunit 1 [KO:K12946] [EC:3.4.-.-]
            4335967  probable signal peptidase complex subunit 2 [KO:K12947] [EC:3.4.-.-]
            4329702  probable signal peptidase complex subunit 2 [KO:K12947] [EC:3.4.-.-]
            4347817  signal peptidase complex subunit 3B [KO:K12948] [EC:3.4.-.-]
            4325792  probable signal peptidase complex subunit 3 [KO:K12948] [EC:3.4.-.-]
            4338334  signal peptidase complex catalytic subunit SEC11A [KO:K13280] [EC:3.4.21.89]
            4340738  signal peptidase complex catalytic subunit SEC11A [KO:K13280] [EC:3.4.21.89]
            4331226  signal peptidase complex catalytic subunit SEC11A isoform X1 [KO:K13280] [EC:3.4.21.89]
            107280467  signal peptidase complex catalytic subunit SEC11A-like [KO:K13280] [EC:3.4.21.89]
            4350939  mitochondrial inner membrane protease subunit 1 isoform X1 [KO:K09647] [EC:3.4.21.-]
            4335047  mitochondrial inner membrane protease subunit 2 [KO:K09648] [EC:3.4.21.-]
            9271486  mitochondrial inner membrane protease subunit 2 [KO:K09648] [EC:3.4.21.-]
REFERENCE   PMID:10087917
  AUTHORS   Dalbey RE, Robinson C.
  TITLE     Protein translocation into and across the bacterial plasma membrane and the plant thylakoid membrane.
  JOURNAL   Trends Biochem Sci 24:17-22 (1999)
            DOI:10.1016/S0968-0004(98)01333-4
REFERENCE   PMID:10652088
  AUTHORS   Berks BC, Sargent F, Palmer T.
  TITLE     The Tat protein export pathway.
  JOURNAL   Mol Microbiol 35:260-74 (2000)
            DOI:10.1046/j.1365-2958.2000.01719.x
REFERENCE   PMID:10747959
  AUTHORS   Wexler M, Sargent F, Jack RL, Stanley NR, Bogsch EG, Robinson C, Berks BC, Palmer T.
  TITLE     TatD is a cytoplasmic protein with DNase activity. No requirement for TatD family proteins in sec-independent protein export.
  JOURNAL   J Biol Chem 275:16717-22 (2000)
            DOI:10.1074/jbc.M000800200
REFERENCE   PMID:11007775
  AUTHORS   Jongbloed JD, Martin U, Antelmann H, Hecker M, Tjalsma H, Venema G, Bron S, van Dijl JM, Muller J.
  TITLE     TatC is a specificity determinant for protein secretion via the twin-arginine translocation pathway.
  JOURNAL   J Biol Chem 275:41350-7 (2000)
            DOI:10.1074/jbc.M004887200
REFERENCE   PMID:18046402
  AUTHORS   Rapoport TA
  TITLE     Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes.
  JOURNAL   Nature 450:663-9 (2007)
            DOI:10.1038/nature06384
REFERENCE   PMID:17368028
  AUTHORS   Flower AM
  TITLE     The SecY translocation complex: convergence of genetics and structure.
  JOURNAL   Trends Microbiol 15:203-10 (2007)
            DOI:10.1016/j.tim.2007.03.001
REFERENCE   PMID:16212506
  AUTHORS   Osborne AR, Rapoport TA, van den Berg B
  TITLE     Protein translocation by the Sec61/SecY channel.
  JOURNAL   Annu Rev Cell Dev Biol 21:529-50 (2005)
            DOI:10.1146/annurev.cellbio.21.012704.133214
REFERENCE   PMID:12475201
  AUTHORS   Paetzel M, Karla A, Strynadka NC, Dalbey RE
  TITLE     Signal peptidases.
  JOURNAL   Chem Rev 102:4549-80 (2002)
            DOI:10.1021/cr010166y
REFERENCE   PMID:10924740
  AUTHORS   Paetzel M, Dalbey RE, Strynadka NC
  TITLE     The structure and mechanism of bacterial type I signal peptidases. A novel antibiotic target.
  JOURNAL   Pharmacol Ther 87:27-49 (2000)
            DOI:10.1016/S0163-7258(00)00064-4
REFERENCE   PMID:17259602
  AUTHORS   Ng SY, Chaban B, VanDyke DJ, Jarrell KF
  TITLE     Archaeal signal peptidases.
  JOURNAL   Microbiology 153:305-14 (2007)
            DOI:10.1099/mic.0.2006/003087-0
REFERENCE   PMID:19299134
  AUTHORS   Desvaux M, Hebraud M, Talon R, Henderson IR
  TITLE     Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  JOURNAL   Trends Microbiol 17:139-45 (2009)
            DOI:10.1016/j.tim.2009.01.004
REFERENCE   PMID:15063851
  AUTHORS   Nakatogawa H, Murakami A, Ito K
  TITLE     Control of SecA and SecM translation by protein secretion.
  JOURNAL   Curr Opin Microbiol 7:145-50 (2004)
            DOI:10.1016/j.mib.2004.01.001
KO_PATHWAY  ko03060
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