ENTRY       osa03022                    Pathway
NAME        Basal transcription factors - Oryza sativa japonica (Japanese rice) (RefSeq)
CLASS       Genetic Information Processing; Transcription
PATHWAY_MAP osa03022  Basal transcription factors
DBLINKS     GO: 0005668 0005669 0005672 0005673 0005674 0005675
ORGANISM    Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
GENE        4338303  transcription initiation factor IIA subunit 1 isoform X1 [KO:K03122]
            4337575  transcription initiation factor IIA subunit 2 [KO:K03123]
            4323838  transcription initiation factor IIA subunit 2-like [KO:K03123]
            4347689  transcription initiation factor IIB [KO:K03124]
            4331943  uncharacterized protein LOC4331943 [KO:K03124]
            4339510  transcription initiation factor IIB-like [KO:K03124]
            107276500  transcription initiation factor IIB-like [KO:K03124]
            107277507  transcription initiation factor IIB-like [KO:K03124]
            4333619  TATA-binding protein 2 isoform X1 [KO:K03120]
            4348699  TATA-binding protein 2-like [KO:K03120]
            4352633  TATA-binding protein 2-like [KO:K03120]
            9266475  transcription initiation factor TFIID subunit 1 isoform X2 [KO:K03125] [EC:2.3.1.48 2.7.11.1]
            4347029  transcription initiation factor TFIID subunit 2 [KO:K03128]
            4338489  transcription initiation factor TFIID subunit 7 [KO:K03132]
            4333405  transcription initiation factor TFIID subunit 8 [KO:K14649]
            9270043  transcription initiation factor TFIID subunit 8 [KO:K14649]
            4347127  transcription initiation factor TFIID subunit 10 [KO:K03134]
            4341679  transcription initiation factor TFIID subunit 5 [KO:K03130]
            4342682  transcription initiation factor TFIID subunit 5 isoform X1 [KO:K03130]
            4333214  transcription initiation factor TFIID subunit 4b isoform X1 [KO:K03129]
            4330186  transcription initiation factor TFIID subunit 4b [KO:K03129]
            4325055  transcription initiation factor TFIID subunit 12 [KO:K03126]
            4327470  transcription initiation factor TFIID subunit 12b isoform X1 [KO:K03126]
            4324027  transcription initiation factor TFIID subunit 6 [KO:K03131]
            4333084  transcription initiation factor TFIID subunit 9 [KO:K03133]
            4325286  transcription initiation factor TFIID subunit 11 [KO:K03135]
            9268703  transcription initiation factor TFIID subunit 13 [KO:K03127]
            4345330  general transcription factor IIE subunit 1 [KO:K03136]
            107278090  general transcription factor IIE subunit 1-like [KO:K03136]
            107277854  general transcription factor IIE subunit 1-like isoform X1 [KO:K03136]
            4348554  uncharacterized protein LOC4348554 [KO:K03137]
            4331801  uncharacterized protein LOC4331801 [KO:K03137]
            4348225  transcription initiation factor IIF subunit alpha isoform X1 [KO:K03138]
            4339276  general transcription factor IIF subunit 2 [KO:K03139] [EC:5.6.2.-]
            9270266  transcription initiation factor IIF subunit beta isoform X1 [KO:K03139] [EC:5.6.2.-]
            4345313  probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [KO:K03141]
            4336358  general transcription factor IIH subunit 2 [KO:K03142]
            4328152  general transcription factor IIH subunit 3 [KO:K03143]
            4337426  general transcription factor IIH subunit 4 [KO:K03144]
            4325640  DNA repair helicase XPB1 [KO:K10843] [EC:5.6.2.4]
            4337788  DNA repair helicase UVH6 [KO:K10844] [EC:5.6.2.3]
            4343686  general transcription factor IIH subunit 5 [KO:K10845]
            4338052  general transcription factor IIH subunit 5 [KO:K10845]
            4338689  cyclin-dependent kinase D-1 [KO:K02202] [EC:2.7.11.22 2.7.11.23]
            4340268  uncharacterized protein LOC4340268 [KO:K10842]
            4350497  uncharacterized protein LOC4350497 [KO:K10842]
            4334040  cyclin-H1-1 isoform X1 [KO:K06634]
REFERENCE   PMID:16858867
  AUTHORS   Thomas MC, Chiang CM
  TITLE     The general transcription machinery and general cofactors.
  JOURNAL   Crit Rev Biochem Mol Biol 41:105-78 (2006)
            DOI:10.1080/10409230600648736
REFERENCE   PMID:12516863
  AUTHORS   Martinez E
  TITLE     Multi-protein complexes in eukaryotic gene transcription.
  JOURNAL   Plant Mol Biol 50:925-47 (2002)
            DOI:10.1023/A:1021258713850
REFERENCE   PMID:19308322
  AUTHORS   Cler E, Papai G, Schultz P, Davidson I
  TITLE     Recent advances in understanding the structure and function of general transcription factor TFIID.
  JOURNAL   Cell Mol Life Sci 66:2123-34 (2009)
            DOI:10.1007/s00018-009-0009-3
REFERENCE   PMID:10838567
  AUTHORS   Malik S, Roeder RG.
  TITLE     Transcriptional regulation through Mediator-like coactivators in yeast and metazoan cells.
  JOURNAL   Trends Biochem Sci 25:277-283 (2000)
            DOI:10.1016/S0968-0004(00)01596-6
REL_PATHWAY osa03020  RNA polymerase
            osa03420  Nucleotide excision repair
KO_PATHWAY  ko03022
///
