ENTRY       osa02010                    Pathway
NAME        ABC transporters - Oryza sativa japonica (Japanese rice) (RefSeq)
DESCRIPTION The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
CLASS       Environmental Information Processing; Membrane transport
PATHWAY_MAP osa02010  ABC transporters
DBLINKS     GO: 0043190 0043191 0043192
            TC: 3.A.1
ORGANISM    Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
GENE        4343172  ABC transporter B family member 28 [KO:K05657]
            4332438  ABC transporter B family member 20 [KO:K05658] [EC:7.6.2.2]
            4346344  ABC transporter B family member 1 [KO:K05658] [EC:7.6.2.2]
            4328570  putative multidrug resistance protein [KO:K05658] [EC:7.6.2.2]
            4330390  ABC transporter B family member 2 [KO:K05658] [EC:7.6.2.2]
            4336042  ABC transporter B family member 19 [KO:K05658] [EC:7.6.2.2]
            4324720  putative ABC transporter B family member 8 [KO:K05658] [EC:7.6.2.2]
            9268765  ABC transporter B family member 11 isoform X1 [KO:K05658] [EC:7.6.2.2]
            107275736  ABC transporter B family member 5-like [KO:K05658] [EC:7.6.2.2]
            107275785  ABC transporter B family member 14-like [KO:K05658] [EC:7.6.2.2]
            107276580  ABC transporter B family member 19-like [KO:K05658] [EC:7.6.2.2]
            107278184  ABC transporter B family member 10-like [KO:K05658] [EC:7.6.2.2]
            4323895  ABC transporter B family member 9 isoform X1 [KO:K05658] [EC:7.6.2.2]
            4323896  ABC transporter B family member 11 [KO:K05658] [EC:7.6.2.2]
            4324305  ABC transporter B family member 20 [KO:K05658] [EC:7.6.2.2]
            4325158  ABC transporter B family member 21 [KO:K05658] [EC:7.6.2.2]
            4325290  ABC transporter B family member 9 [KO:K05658] [EC:7.6.2.2]
            4326410  ABC transporter B family member 9 isoform X1 [KO:K05658] [EC:7.6.2.2]
            4336189  ABC transporter B family member 15 [KO:K05658] [EC:7.6.2.2]
            4337173  ABC transporter B family member 19 isoform X1 [KO:K05658] [EC:7.6.2.2]
            4337742  ABC transporter B family member 21 [KO:K05658] [EC:7.6.2.2]
            4339511  ABC transporter B family member 4 [KO:K05658] [EC:7.6.2.2]
            9269254  putative multidrug resistance protein [KO:K05658] [EC:7.6.2.2]
            9270100  ABC transporter B family member 9 isoform X1 [KO:K05658] [EC:7.6.2.2]
            4328566  putative multidrug resistance protein [KO:K05658] [EC:7.6.2.2]
            4339984  ABC transporter B family member 25, mitochondrial [KO:K05662]
            4340331  ABC transporter C family member 13 isoform X1 [KO:K05674]
            4324471  ABC transporter D family member 1 [KO:K25819] [EC:7.6.2.4]
            4337574  ABC transporter D family member 1 [KO:K25819] [EC:7.6.2.4]
            4344750  ABC transporter G family member 14 [KO:K05681]
            4331674  ABC transporter G family member 22 isoform X1 [KO:K05681]
            4349927  ABC transporter G family member 25 [KO:K05681]
            107275309  ABC transporter G family member 2-like isoform X1 [KO:K05681]
            107280670  LOW QUALITY PROTEIN: ABC transporter G family member 5-like [KO:K05681]
            4326649  ABC transporter G family member 10 [KO:K05681]
            4332449  ABC transporter G family member 5 [KO:K05681]
            4338652  ABC transporter G family member 23 [KO:K05681]
            4341120  ABC transporter G family member 4 [KO:K05681]
            4346998  ABC transporter G family member 17 [KO:K05681]
            4338133  ABC transporter G family member 12 [KO:K05681]
            4348993  ABC transporter G family member 11 [KO:K05681]
            4336468  ABC transporter G family member 11 isoform X1 [KO:K05681]
            4347345  ABC transporter G family member 11 [KO:K05681]
            4326045  ABC transporter G family member 7 [KO:K05681]
            4341486  ABC transporter G family member 26 [KO:K05681]
            4347344  ABC transporter G family member 11 [KO:K05681]
            4327728  ABC transporter G family member 36 [KO:K08711]
            4327727  ABC transporter G family member 35 [KO:K08711]
            4324722  ABC transporter G family member 38 [KO:K08711]
            9268322  ABC transporter G family member 49 isoform X1 [KO:K08711]
            4348271  ABC transporter G family member 51 [KO:K08711]
            4341281  ABC transporter G family member 42 [KO:K08711]
            4323865  ABC transporter G family member 31 [KO:K08711]
            4350807  ABC transporter G family member 48 [KO:K08711]
            4328687  ABC transporter G family member 39 [KO:K08711]
            4343412  ABC transporter G family member 43 [KO:K08711]
            4327730  ABC transporter G family member 37 isoform X1 [KO:K08711]
            9268937  ABC transporter G family member 41 isoform X1 [KO:K08711]
            9272130  ABC transporter G family member 34 [KO:K08711]
            4345450  ABC transporter G family member 44 [KO:K08711]
            4352332  ABC transporter G family member 50 isoform X1 [KO:K08711]
            9269190  ABC transporter G family member 53 [KO:K08711]
            4326812  ABC transporter G family member 32 isoform X1 [KO:K08711]
            107276397  ABC transporter G family member 47 [KO:K08711]
            4346210  ABC transporter G family member 45 [KO:K08711]
            4329158  ABC transporter G family member 40 isoform X1 [KO:K08711]
COMPOUND    C00009  Orthophosphate
            C00025  L-Glutamate
            C00031  D-Glucose
            C00032  Heme
            C00034  Manganese
            C00037  Glycine
            C00038  Zinc cation
            C00041  L-Alanine
            C00047  L-Lysine
            C00049  L-Aspartate
            C00051  Glutathione
            C00059  Sulfate
            C00062  L-Arginine
            C00064  L-Glutamine
            C00065  L-Serine
            C00070  Copper
            C00077  L-Ornithine
            C00079  L-Phenylalanine
            C00086  Urea
            C00088  Nitrite
            C00089  Sucrose
            C00093  sn-Glycerol 3-phosphate
            C00095  D-Fructose
            C00098  Oligopeptide
            C00107  Dipeptide
            C00114  Choline
            C00116  Glycerol
            C00120  Biotin
            C00121  D-Ribose
            C00123  L-Leucine
            C00134  Putrescine
            C00135  L-Histidine
            C00137  myo-Inositol
            C00140  N-Acetyl-D-glucosamine
            C00148  L-Proline
            C00151  L-Amino acid
            C00159  D-Mannose
            C00175  Cobalt ion
            C00181  D-Xylose
            C00183  L-Valine
            C00185  Cellobiose
            C00188  L-Threonine
            C00208  Maltose
            C00212  Adenosine
            C00243  Lactose
            C00244  Nitrate
            C00245  Taurine
            C00255  Riboflavin
            C00259  L-Arabinose
            C00288  HCO3-
            C00291  Nickel
            C00294  Inosine
            C00299  Uridine
            C00315  Spermidine
            C00320  Thiosulfate
            C00330  Deoxyguanosine
            C00333  D-Galacturonate
            C00338  Lipopolysaccharide
            C00378  Thiamine
            C00379  Xylitol
            C00387  Guanosine
            C00392  Mannitol
            C00407  L-Isoleucine
            C00430  5-Aminolevulinate
            C00470  Pectate
            C00475  Cytidine
            C00487  Carnitine
            C00491  L-Cystine
            C00492  Raffinose
            C00503  Erythritol
            C00526  Deoxyuridine
            C00559  Deoxyadenosine
            C00719  Betaine
            C00794  D-Sorbitol
            C00855  D-Methionine
            C00865  Phospholipid
            C00881  Deoxycytidine
            C00919  Choline sulfate
            C00973  Cyclomaltodextrin
            C01083  alpha,alpha-Trehalose
            C01153  Orthophosphoric monoester
            C01157  Hydroxyproline
            C01177  Inositol 1-phosphate
            C01181  4-Trimethylammoniobutanoate
            C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
            C01330  Sodium cation
            C01417  Cyanate
            C01487  D-Allose
            C01606  Phthalate
            C01630  Xylobiose
            C01667  Bacitracin
            C01674  Chitobiose
            C01682  Nopaline
            C01684  D-Rhamnose
            C01762  Xanthosine
            C01834  Lipoprotein
            C01835  Maltotriose
            C01935  Maltodextrin
            C01946  Oleandomycin
            C02160  Isomaltotriose
            C02273  Digalacturonate
            C03557  2-Aminoethylphosphonate
            C03611  Galactose oligosaccharide
            C03619  Methyl beta-D-galactoside
            C04114  (E)-4-(Trimethylammonio)but-2-enoate
            C04137  Octopine
            C05349  Ciprofloxacin
            C05402  Melibiose
            C05512  Deoxyinosine
            C05776  Vitamin B12
            C06227  Fe(III)hydroxamate
            C06229  Fe(III)dicitrate
            C06230  Fe-enterobactin
            C06232  Molybdate
            C06687  Norfloxacin
            C06705  Capsular polysaccharide
            C06706  Lipo-oligosaccharide
            C06707  Teichoic acid
            C06767  Hemine
            C07662  Sparfloxacin
            C07663  Moxifloxacin
            C11612  Polymyxin B
            C13768  Colistin sulfate
            C14818  Fe2+
            C14819  Fe3+
            C15521  Alkanesulfonate
            C15719  Coelichelin
            C16421  AI-2
            C16692  Mannopine
            C19609  Nickel(2+)
            C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
            C20570  alpha-1,5-L-Arabinobiose
            C20571  alpha-1,5-L-Arabinotriose
            C20572  alpha-1,5-L-Arabinotetraose
            C20573  Aldotetraouronic acid
            C20679  Tungstate
            C21066  D-Galactofuranose
            C22040  S-Methyl-L-cysteine
            G00457  Maltotetraose
REFERENCE   PMID:9799792
  AUTHORS   Tomii K, Kanehisa M.
  TITLE     A comparative analysis of ABC transporters in complete microbial genomes.
  JOURNAL   Genome Res 8:1048-59 (1998)
            DOI:10.1101/gr.8.10.1048
REFERENCE   PMID:18424520
  AUTHORS   Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  TITLE     Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  JOURNAL   J Bacteriol 190:4460-9 (2008)
            DOI:10.1128/JB.00270-08
REFERENCE   PMID:18375759
  AUTHORS   Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  TITLE     Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  JOURNAL   Proc Natl Acad Sci U S A 105:5537-42 (2008)
            DOI:10.1073/pnas.0801196105
REFERENCE   PMID:10557362
  AUTHORS   Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  TITLE     Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  JOURNAL   Proc Natl Acad Sci U S A 96:13571-6 (1999)
            DOI:10.1073/pnas.96.23.13571
REFERENCE   PMID:11731493
  AUTHORS   Quintero MJ, Montesinos ML, Herrero A, Flores E
  TITLE     Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  JOURNAL   Genome Res 11:2034-40 (2001)
            DOI:10.1101/gr.196301
REFERENCE   PMID:16135226
  AUTHORS   Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  TITLE     ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  JOURNAL   Mol Microbiol 57:1582-92 (2005)
            DOI:10.1111/j.1365-2958.2005.04791.x
REFERENCE   PMID:11929526
  AUTHORS   Valladares A, Montesinos ML, Herrero A, Flores E.
  TITLE     An ABC-type, high-affinity urea permease identified in cyanobacteria.
  JOURNAL   Mol Microbiol 43:703-15 (2002)
            DOI:10.1046/j.1365-2958.2002.02778.x
REFERENCE   PMID:18326572
  AUTHORS   Richard-Fogal CL, Frawley ER, Kranz RG
  TITLE     Topology and function of CcmD in cytochrome c maturation.
  JOURNAL   J Bacteriol 190:3489-93 (2008)
            DOI:10.1128/JB.00146-08
REFERENCE   PMID:16109926
  AUTHORS   Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  TITLE     The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  JOURNAL   J Bacteriol 187:5861-7 (2005)
            DOI:10.1128/JB.187.17.5861-5867.2005
REFERENCE   PMID:17873039
  AUTHORS   Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  TITLE     The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  JOURNAL   J Bacteriol 189:8361-5 (2007)
            DOI:10.1128/JB.01028-07
REFERENCE   PMID:17214741
  AUTHORS   Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  TITLE     Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  JOURNAL   Mol Microbiol 63:895-910 (2007)
            DOI:10.1111/j.1365-2958.2006.05549.x
REFERENCE   PMID:18805970
  AUTHORS   Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  TITLE     MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  JOURNAL   J Bacteriol 190:7693-8 (2008)
            DOI:10.1128/JB.00853-08
KO_PATHWAY  ko02010
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