ENTRY       osa01100                    Pathway
NAME        Metabolic pathways - Oryza sativa japonica (Japanese rice) (RefSeq)
PATHWAY_MAP osa01100  Metabolic pathways
MODULE      osa_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:osa01100]
            osa_M00002  Glycolysis, core module involving three-carbon compounds [PATH:osa01100]
            osa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:osa01100]
            osa_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:osa01100]
            osa_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:osa01100]
            osa_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:osa01100]
            osa_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:osa01100]
            osa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:osa01100]
            osa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:osa01100]
            osa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:osa01100]
            osa_M00012  Glyoxylate cycle [PATH:osa01100]
            osa_M00015  Proline biosynthesis, glutamate => proline [PATH:osa01100]
            osa_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:osa01100]
            osa_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:osa01100]
            osa_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:osa01100]
            osa_M00021  Cysteine biosynthesis, serine => cysteine [PATH:osa01100]
            osa_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:osa01100]
            osa_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:osa01100]
            osa_M00026  Histidine biosynthesis, PRPP => histidine [PATH:osa01100]
            osa_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:osa01100]
            osa_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:osa01100]
            osa_M00034  Methionine salvage pathway [PATH:osa01100]
            osa_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:osa01100]
            osa_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:osa01100]
            osa_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:osa01100]
            osa_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:osa01100]
            osa_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:osa01100]
            osa_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:osa01100]
            osa_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:osa01100]
            osa_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:osa01100]
            osa_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:osa01100]
            osa_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:osa01100]
            osa_M00055  N-glycan precursor biosynthesis [PATH:osa01100]
            osa_M00072  N-glycosylation by oligosaccharyltransferase [PATH:osa01100]
            osa_M00073  N-glycan precursor trimming [PATH:osa01100]
            osa_M00081  Pectin degradation [PATH:osa01100]
            osa_M00082  Fatty acid biosynthesis, initiation [PATH:osa01100]
            osa_M00083  Fatty acid biosynthesis, elongation [PATH:osa01100]
            osa_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:osa01100]
            osa_M00087  beta-Oxidation [PATH:osa01100]
            osa_M00089  Triacylglycerol biosynthesis [PATH:osa01100]
            osa_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:osa01100]
            osa_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:osa01100]
            osa_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:osa01100]
            osa_M00097  beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:osa01100]
            osa_M00098  Acylglycerol degradation [PATH:osa01100]
            osa_M00100  Sphingosine degradation [PATH:osa01100]
            osa_M00112  Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:osa01100]
            osa_M00113  Jasmonic acid biosynthesis [PATH:osa01100]
            osa_M00114  Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:osa01100]
            osa_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:osa01100]
            osa_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:osa01100]
            osa_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:osa01100]
            osa_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:osa01100]
            osa_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:osa01100]
            osa_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:osa01100]
            osa_M00132  Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:osa01100]
            osa_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:osa01100]
            osa_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:osa01100]
            osa_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:osa01100]
            osa_M00166  Reductive pentose phosphate cycle, ribulose-5P => glyceraldehyde-3P [PATH:osa01100]
            osa_M00167  Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P [PATH:osa01100]
            osa_M00168  CAM (Crassulacean acid metabolism), dark [PATH:osa01100]
            osa_M00169  CAM (Crassulacean acid metabolism), light [PATH:osa01100]
            osa_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:osa01100]
            osa_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:osa01100]
            osa_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:osa01100]
            osa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:osa01100]
            osa_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:osa01100]
            osa_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:osa01100]
            osa_M00372  Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:osa01100]
            osa_M00415  Fatty acid elongation in endoplasmic reticulum [PATH:osa01100]
            osa_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:osa01100]
            osa_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:osa01100]
            osa_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:osa01100]
            osa_M00532  Photorespiration [PATH:osa01100]
            osa_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:osa01100]
            osa_M00555  Betaine biosynthesis, choline => betaine [PATH:osa01100]
            osa_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:osa01100]
            osa_M00844  Arginine biosynthesis, ornithine => arginine [PATH:osa01100]
            osa_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:osa01100]
            osa_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:osa01100]
            osa_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:osa01100]
            osa_M00882  Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:osa01100]
            osa_M00892  UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:osa01100]
            osa_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:osa01100]
            osa_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:osa01100]
            osa_M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:osa01100]
            osa_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:osa01100]
            osa_M00917  Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:osa01100]
            osa_M00927  Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:osa01100]
            osa_M00928  Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:osa01100]
            osa_M00932  Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:osa01100]
            osa_M00933  Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:osa01100]
            osa_M00936  Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin [PATH:osa01100]
            osa_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:osa01100]
            osa_M00953  Mugineic acid biosynthesis, methionine => 3-epihydroxymugineic acid [PATH:osa01100]
ORGANISM    Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
REL_PATHWAY osa00010  Glycolysis / Gluconeogenesis
            osa00020  Citrate cycle (TCA cycle)
            osa00030  Pentose phosphate pathway
            osa00040  Pentose and glucuronate interconversions
            osa00051  Fructose and mannose metabolism
            osa00052  Galactose metabolism
            osa00053  Ascorbate and aldarate metabolism
            osa00061  Fatty acid biosynthesis
            osa00062  Fatty acid elongation
            osa00071  Fatty acid degradation
            osa00073  Cutin, suberine and wax biosynthesis
            osa00100  Steroid biosynthesis
            osa00130  Ubiquinone and other terpenoid-quinone biosynthesis
            osa00190  Oxidative phosphorylation
            osa00195  Photosynthesis
            osa00196  Photosynthesis - antenna proteins
            osa00220  Arginine biosynthesis
            osa00230  Purine metabolism
            osa00232  Caffeine metabolism
            osa00240  Pyrimidine metabolism
            osa00250  Alanine, aspartate and glutamate metabolism
            osa00260  Glycine, serine and threonine metabolism
            osa00261  Monobactam biosynthesis
            osa00270  Cysteine and methionine metabolism
            osa00280  Valine, leucine and isoleucine degradation
            osa00290  Valine, leucine and isoleucine biosynthesis
            osa00300  Lysine biosynthesis
            osa00310  Lysine degradation
            osa00330  Arginine and proline metabolism
            osa00340  Histidine metabolism
            osa00350  Tyrosine metabolism
            osa00360  Phenylalanine metabolism
            osa00380  Tryptophan metabolism
            osa00400  Phenylalanine, tyrosine and tryptophan biosynthesis
            osa00402  Benzoxazinoid biosynthesis
            osa00410  beta-Alanine metabolism
            osa00430  Taurine and hypotaurine metabolism
            osa00440  Phosphonate and phosphinate metabolism
            osa00450  Selenocompound metabolism
            osa00460  Cyanoamino acid metabolism
            osa00470  D-Amino acid metabolism
            osa00480  Glutathione metabolism
            osa00500  Starch and sucrose metabolism
            osa00510  N-Glycan biosynthesis
            osa00511  Other glycan degradation
            osa00513  Various types of N-glycan biosynthesis
            osa00514  Other types of O-glycan biosynthesis
            osa00520  Amino sugar and nucleotide sugar metabolism
            osa00531  Glycosaminoglycan degradation
            osa00543  Exopolysaccharide biosynthesis
            osa00561  Glycerolipid metabolism
            osa00562  Inositol phosphate metabolism
            osa00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
            osa00564  Glycerophospholipid metabolism
            osa00565  Ether lipid metabolism
            osa00590  Arachidonic acid metabolism
            osa00591  Linoleic acid metabolism
            osa00592  alpha-Linolenic acid metabolism
            osa00600  Sphingolipid metabolism
            osa00601  Glycosphingolipid biosynthesis - lacto and neolacto series
            osa00603  Glycosphingolipid biosynthesis - globo and isoglobo series
            osa00604  Glycosphingolipid biosynthesis - ganglio series
            osa00620  Pyruvate metabolism
            osa00630  Glyoxylate and dicarboxylate metabolism
            osa00640  Propanoate metabolism
            osa00650  Butanoate metabolism
            osa00660  C5-Branched dibasic acid metabolism
            osa00670  One carbon pool by folate
            osa00710  Carbon fixation in photosynthetic organisms
            osa00730  Thiamine metabolism
            osa00740  Riboflavin metabolism
            osa00750  Vitamin B6 metabolism
            osa00760  Nicotinate and nicotinamide metabolism
            osa00770  Pantothenate and CoA biosynthesis
            osa00780  Biotin metabolism
            osa00785  Lipoic acid metabolism
            osa00790  Folate biosynthesis
            osa00860  Porphyrin metabolism
            osa00900  Terpenoid backbone biosynthesis
            osa00902  Monoterpenoid biosynthesis
            osa00903  Limonene and pinene degradation
            osa00904  Diterpenoid biosynthesis
            osa00905  Brassinosteroid biosynthesis
            osa00906  Carotenoid biosynthesis
            osa00908  Zeatin biosynthesis
            osa00909  Sesquiterpenoid and triterpenoid biosynthesis
            osa00910  Nitrogen metabolism
            osa00920  Sulfur metabolism
            osa00940  Phenylpropanoid biosynthesis
            osa00941  Flavonoid biosynthesis
            osa00942  Anthocyanin biosynthesis
            osa00944  Flavone and flavonol biosynthesis
            osa00950  Isoquinoline alkaloid biosynthesis
            osa00960  Tropane, piperidine and pyridine alkaloid biosynthesis
            osa00965  Betalain biosynthesis
            osa00966  Glucosinolate biosynthesis
            osa00999  Biosynthesis of various plant secondary metabolites
            osa01040  Biosynthesis of unsaturated fatty acids
KO_PATHWAY  ko01100
///
