ENTRY       osa00630                    Pathway
NAME        Glyoxylate and dicarboxylate metabolism - Oryza sativa japonica (Japanese rice) (RefSeq)
CLASS       Metabolism; Carbohydrate metabolism
PATHWAY_MAP osa00630  Glyoxylate and dicarboxylate metabolism
MODULE      osa_M00012  Glyoxylate cycle [PATH:osa00630]
            osa_M00532  Photorespiration [PATH:osa00630]
DBLINKS     GO: 0046487 0043648
ORGANISM    Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
GENE        4343441  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
            4335745  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
            4329518  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
            4332592  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            4332593  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            9268154  malate synthase [KO:K01638] [EC:2.3.3.9]
            4348905  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
            4336595  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
            4352871  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
            4334274  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
            4326249  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
            4327423  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
            4345657  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
            4339682  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
            4343993  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
            4328812  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
            4328598  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
            4350660  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
            4340833  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            4331547  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            9270306  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            4326136  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            4346520  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            4334349  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
            4337048  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 isoform X1 [KO:K11517] [EC:1.1.3.15]
            4342420  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 isoform X1 [KO:K11517] [EC:1.1.3.15]
            4343908  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
            9266366  LOW QUALITY PROTEIN: peroxisomal (S)-2-hydroxy-acid oxidase GLO2 [KO:K11517] [EC:1.1.3.15]
            4328073  catalase isozyme A [KO:K03781] [EC:1.11.1.6]
            4342124  catalase isozyme B [KO:K03781] [EC:1.11.1.6]
            4331509  catalase-1 [KO:K03781] [EC:1.11.1.6]
            4334916  glyoxylate/hydroxypyruvate reductase HPR3 isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
            4334914  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
            4334915  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
            4334913  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
            4326312  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            4329690  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            4327981  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
            4346547  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            4336245  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            9271010  phosphoglycolate phosphatase 1B, chloroplastic isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            3131463  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
            4352016  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
            4328326  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
            4351966  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
            4352014  ribulose bisphosphate carboxylase small chain A, chloroplastic [KO:K01602] [EC:4.1.1.39]
            4352021  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
            4345962  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
            4342210  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
            4344164  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
            4337272  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
            4333896  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
            4330649  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
            4332108  glutamine synthetase cytosolic isozyme 1-2 [KO:K01915] [EC:6.3.1.2]
            4338868  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
            4324773  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
            4350456  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
            4334048  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
            4352058  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
            4325932  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
            4341516  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
            4337051  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
            4326980  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
            4337862  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
            4326849  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
            4337881  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
            4341790  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
            4349114  glycine cleavage system H protein, mitochondrial [KO:K02437]
            4328441  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
            9269154  uncharacterized protein LOC9269154 [KO:K02437]
            4324401  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
            4341070  formate dehydrogenase 2, mitochondrial [KO:K00122] [EC:1.17.1.9]
            4341069  formate dehydrogenase 1, mitochondrial [KO:K00122] [EC:1.17.1.9]
            4331294  formyltetrahydrofolate deformylase 2, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
            4326894  uncharacterized protein LOC4326894 [KO:K01455] [EC:3.5.1.49]
            4337447  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
COMPOUND    C00007  Oxygen
            C00011  CO2
            C00014  Ammonia
            C00022  Pyruvate
            C00024  Acetyl-CoA
            C00025  L-Glutamate
            C00026  2-Oxoglutarate
            C00027  Hydrogen peroxide
            C00033  Acetate
            C00036  Oxaloacetate
            C00037  Glycine
            C00042  Succinate
            C00048  Glyoxylate
            C00058  Formate
            C00064  L-Glutamine
            C00065  L-Serine
            C00091  Succinyl-CoA
            C00100  Propanoyl-CoA
            C00111  Glycerone phosphate
            C00136  Butanoyl-CoA
            C00149  (S)-Malate
            C00158  Citrate
            C00160  Glycolate
            C00168  Hydroxypyruvate
            C00197  3-Phospho-D-glycerate
            C00209  Oxalate
            C00258  D-Glycerate
            C00266  Glycolaldehyde
            C00311  Isocitrate
            C00313  Oxalyl-CoA
            C00332  Acetoacetyl-CoA
            C00417  cis-Aconitate
            C00552  meso-Tartaric acid
            C00631  2-Phospho-D-glycerate
            C00683  (S)-Methylmalonyl-CoA
            C00798  Formyl-CoA
            C00877  Crotonoyl-CoA
            C00888  Pentanoyl-CoA
            C00898  (R,R)-Tartaric acid
            C00975  Dihydroxyfumarate
            C00988  2-Phosphoglycolate
            C01127  4-Hydroxy-2-oxoglutarate
            C01146  2-Hydroxy-3-oxopropanoate
            C01182  D-Ribulose 1,5-bisphosphate
            C01213  (R)-Methylmalonyl-CoA
            C01380  Ethylene glycol
            C01732  Mesaconate
            C01989  3-Ethylmalate
            C01990  3-Oxalomalate
            C02123  3-Propylmalate
            C02405  Formyl phosphate
            C03217  2-Hydroxy-3-oxoadipate
            C03459  2-Hydroxy-3-oxosuccinate
            C03548  trans-2,3-Epoxysuccinate
            C03561  (R)-3-Hydroxybutanoyl-CoA
            C03618  L-threo-3-Methylaspartate
            C04348  L-Malyl-CoA
            C06027  L-erythro-3-Methylmalyl-CoA
            C06028  2-Methylfumaryl-CoA
            C06049  N-Formylderivatives
            C18026  (2S)-Ethylmalonyl-CoA
            C18324  (2S)-Methylsuccinyl-CoA
            C20238  (2R)-Ethylmalonyl-CoA
            C22337  D-Ribulose 1-phosphate
REFERENCE   PMID:10978349
  AUTHORS   Njau RK, Herndon CA, Hawes JW.
  TITLE     Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  JOURNAL   J Biol Chem 275:38780-6 (2000)
            DOI:10.1074/jbc.M007432200
REFERENCE   PMID:18065535
  AUTHORS   Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  TITLE     Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  JOURNAL   J Bacteriol 190:1366-74 (2008)
            DOI:10.1128/JB.01621-07
REFERENCE   PMID:18819910
  AUTHORS   Erb TJ, Retey J, Fuchs G, Alber BE
  TITLE     Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  JOURNAL   J Biol Chem 283:32283-93 (2008)
            DOI:10.1074/jbc.M805527200
REFERENCE   PMID:9596633
  AUTHORS   Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  TITLE     Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  JOURNAL   Plant Cell 10:741-52 (1998)
            DOI:10.1105/tpc.10.5.741
REFERENCE   PMID:16407450
  AUTHORS   Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  TITLE     Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  JOURNAL   Plant Physiol 140:444-56 (2006)
            DOI:10.1104/pp.105.071910
REFERENCE   PMID:21252347
  AUTHORS   Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  TITLE     A methylaspartate cycle in haloarchaea.
  JOURNAL   Science 331:334-7 (2011)
            DOI:10.1126/science.1196544
REFERENCE   PMID:11513957
  AUTHORS   Serrano JA, Bonete MJ
  TITLE     Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  JOURNAL   Biochim Biophys Acta 1520:154-62 (2001)
            DOI:10.1016/S0167-4781(01)00263-9
REL_PATHWAY osa00010  Glycolysis / Gluconeogenesis
            osa00020  Citrate cycle (TCA cycle)
            osa00030  Pentose phosphate pathway
            osa00053  Ascorbate and aldarate metabolism
            osa00071  Fatty acid degradation
            osa00230  Purine metabolism
            osa00250  Alanine, aspartate and glutamate metabolism
            osa00260  Glycine, serine and threonine metabolism
            osa00620  Pyruvate metabolism
            osa00710  Carbon fixation in photosynthetic organisms
            osa00750  Vitamin B6 metabolism
            osa00910  Nitrogen metabolism
KO_PATHWAY  ko00630
///
