ENTRY       osa00240                    Pathway
NAME        Pyrimidine metabolism - Oryza sativa japonica (Japanese rice) (RefSeq)
CLASS       Metabolism; Nucleotide metabolism
PATHWAY_MAP osa00240  Pyrimidine metabolism
MODULE      osa_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:osa00240]
            osa_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:osa00240]
            osa_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:osa00240]
            osa_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:osa00240]
DBLINKS     GO: 0006220 0006213
ORGANISM    Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
GENE        4326346  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
            4330474  carbamoyl-phosphate synthase small chain, chloroplastic isoform X2 [KO:K01956] [EC:6.3.5.5]
            4345071  aspartate carbamoyltransferase, chloroplastic [KO:K00609] [EC:2.1.3.2]
            4325542  dihydroorotase, mitochondrial [KO:K01465] [EC:3.5.2.3]
            4337396  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
            4325739  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
            4325740  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
            4330910  UMP-CMP kinase 4-like [KO:K13800] [EC:2.7.4.14]
            4343960  UMP-CMP kinase 3 isoform X2 [KO:K13800] [EC:2.7.4.14]
            4334909  UMP-CMP kinase 2 isoform X1 [KO:K13800] [EC:2.7.4.14]
            4339882  UMP-CMP kinase 1 isoform X2 [KO:K13800] [EC:2.7.4.14]
            9267059  UMP-CMP kinase 4-like isoform X1 [KO:K13800] [EC:2.7.4.14]
            4324465  uridylate kinase [KO:K09903] [EC:2.7.4.22]
            4339815  nucleoside diphosphate kinase 3 [KO:K00940] [EC:2.7.4.6]
            4343275  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
            4352460  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
            4349403  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
            4332967  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
            4345665  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
            4344315  probable apyrase 2 [KO:K14641] [EC:3.6.1.5]
            4350420  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
            4332721  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
            4349645  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
            4349647  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
            4351367  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
            4327327  ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
            4339675  CTP synthase [KO:K01937] [EC:6.3.4.2]
            4324172  CTP synthase [KO:K01937] [EC:6.3.4.2]
            4326656  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
            4352499  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
            107275437  CTP synthase 1-like [KO:K01937] [EC:6.3.4.2]
            4347509  uridine kinase-like protein 2, chloroplastic isoform X1 [KO:K00876] [EC:2.7.1.48]
            4328991  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
            4350243  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
            4346121  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
            4330475  uridine-cytidine kinase C [KO:K00876] [EC:2.7.1.48]
            4327823  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            4342678  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            4346302  probable uridine nucleosidase 1 isoform X1 [KO:K01240] [EC:3.2.2.3]
            4347891  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
            4333153  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
            4338981  uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
            4345970  pseudouridine-5'-phosphate glycosidase isoform X1 [KO:K16329] [EC:4.2.1.70]
            4333582  7-methylguanosine phosphate-specific 5'-nucleotidase A [KO:K24242] [EC:3.1.3.91]
            4325937  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
            4340258  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
            4331059  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
            4339981  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
            9266846  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
            4329363  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
            4335533  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
            4336398  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
            4326555  HD domain-containing protein 2 homolog [KO:K07023] [EC:3.1.3.89]
            4328498  HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
            4326895  deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
            4344056  thymidylate kinase [KO:K00943] [EC:2.7.4.9]
            4333679  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
            4331376  thymidine kinase isoform X1 [KO:K00857] [EC:2.7.1.21]
            4350527  bifunctional dihydrofolate reductase-thymidylate synthase isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
            9271078  putative bifunctional dihydrofolate reductase-thymidylate synthase isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
            4330657  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
            4327558  dihydropyrimidinase isoform X1 [KO:K01464] [EC:3.5.2.2]
            4343249  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
COMPOUND    C00015  UDP
            C00039  DNA
            C00046  RNA
            C00055  CMP
            C00063  CTP
            C00064  L-Glutamine
            C00075  UTP
            C00086  Urea
            C00099  beta-Alanine
            C00105  UMP
            C00106  Uracil
            C00112  CDP
            C00119  5-Phospho-alpha-D-ribose 1-diphosphate
            C00169  Carbamoyl phosphate
            C00178  Thymine
            C00214  Thymidine
            C00222  3-Oxopropanoate
            C00239  dCMP
            C00295  Orotate
            C00299  Uridine
            C00337  (S)-Dihydroorotate
            C00363  dTDP
            C00364  dTMP
            C00365  dUMP
            C00380  Cytosine
            C00383  Malonate
            C00429  5,6-Dihydrouracil
            C00438  N-Carbamoyl-L-aspartate
            C00458  dCTP
            C00459  dTTP
            C00460  dUTP
            C00475  Cytidine
            C00526  Deoxyuridine
            C00672  2-Deoxy-D-ribose 1-phosphate
            C00705  dCDP
            C00813  Barbiturate
            C00881  Deoxycytidine
            C01013  3-Hydroxypropanoate
            C01103  Orotidine 5'-phosphate
            C01168  Pseudouridine 5'-phosphate
            C01205  (R)-3-Amino-2-methylpropanoate
            C01346  dUDP
            C01368  3'-UMP
            C01563  Carbamate
            C02067  Pseudouridine
            C02170  Methylmalonate
            C02354  2',3'-Cyclic CMP
            C02355  2',3'-Cyclic UMP
            C02376  5-Methylcytosine
            C02642  3-Ureidopropionate
            C03997  5-Hydroxymethyldeoxycytidylate
            C05281  5-Methylbarbiturate
            C05822  3'-CMP
            C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
            C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
            C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
            C15607  3-Oxo-3-ureidopropanoate
            C20231  (Z)-3-Ureidoacrylate peracid
            C20249  (Z)-3-Peroxyaminoacrylate
            C20253  Aminoacrylate
            C20254  Ureidoacrylate
            C20846  3-Oxo-3-ureidoisobutyrate
            C21028  (R)-5,6-Dihydrothymine
            C21029  (R)-3-Ureidoisobutyrate
REL_PATHWAY osa00030  Pentose phosphate pathway
            osa00220  Arginine biosynthesis
            osa00250  Alanine, aspartate and glutamate metabolism
            osa00280  Valine, leucine and isoleucine degradation
            osa00410  beta-Alanine metabolism
KO_PATHWAY  ko00240
///
