ENTRY       osa00230                    Pathway
NAME        Purine metabolism - Oryza sativa japonica (Japanese rice) (RefSeq)
CLASS       Metabolism; Nucleotide metabolism
PATHWAY_MAP osa00230  Purine metabolism
MODULE      osa_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:osa00230]
            osa_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:osa00230]
            osa_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:osa00230]
            osa_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:osa00230]
            osa_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:osa00230]
DBLINKS     GO: 0006163 0042278
ORGANISM    Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
GENE        4344352  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
            4346295  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
            4347801  nudix hydrolase 23, chloroplastic [KO:K18453] [EC:3.6.1.13 3.6.1.18]
            4339996  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
            4333895  phosphoglucomutase, cytoplasmic 2 [KO:K01835] [EC:5.4.2.2]
            4348230  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
            4328168  ribose-phosphate pyrophosphokinase 1, chloroplastic [KO:K00948] [EC:2.7.6.1]
            4341535  ribose-phosphate pyrophosphokinase 2, chloroplastic isoform X1 [KO:K00948] [EC:2.7.6.1]
            107276220  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
            4338879  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
            4324764  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
            4344854  phosphoribosylamine--glycine ligase isoform X1 [KO:K01945] [EC:6.3.4.13]
            4351721  phosphoribosylamine--glycine ligase isoform X1 [KO:K01945] [EC:6.3.4.13]
            4345953  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
            4324899  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial isoform X1 [KO:K01952] [EC:6.3.5.3]
            107277292  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
            4334671  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic [KO:K01933] [EC:6.3.3.1]
            4327345  phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [KO:K11808] [EC:4.1.1.21]
            4347318  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
            4332642  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
            4344931  bifunctional purine biosynthesis protein PurH isoform X1 [KO:K00602] [EC:2.1.2.3 3.5.4.10]
            4343246  adenine phosphoribosyltransferase 4 isoform X1 [KO:K00759] [EC:2.4.2.7]
            4329972  adenine phosphoribosyltransferase 4 [KO:K00759] [EC:2.4.2.7]
            4336327  adenine phosphoribosyltransferase 2 [KO:K00759] [EC:2.4.2.7]
            4352670  adenine phosphoribosyltransferase 1 [KO:K00759] [EC:2.4.2.7]
            107275550  adenine phosphoribosyltransferase 1-like [KO:K00759] [EC:2.4.2.7]
            4327823  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            4342678  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            107276353  hypoxanthine-guanine phosphoribosyltransferase-like [KO:K00760] [EC:2.4.2.8]
            4334308  inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
            4339815  nucleoside diphosphate kinase 3 [KO:K00940] [EC:2.7.4.6]
            4343275  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
            4352460  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
            4349403  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
            4332967  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
            4345665  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
            4344315  probable apyrase 2 [KO:K14641] [EC:3.6.1.5]
            4350420  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
            4332721  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
            4349645  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
            4349647  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
            4351367  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
            4348803  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
            4333171  xanthine dehydrogenase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
            4345281  GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
            4332674  guanylate kinase 2, chloroplastic/mitochondrial [KO:K00942] [EC:2.7.4.8]
            4352344  guanylate kinase 1 [KO:K00942] [EC:2.7.4.8]
            4340258  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
            4331059  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
            4339981  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
            9266846  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
            4326555  HD domain-containing protein 2 homolog [KO:K07023] [EC:3.1.3.89]
            4328498  HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
            4337888  probable GTP diphosphokinase CRSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
            4345756  probable GTP diphosphokinase RSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
            4337890  probable GTP diphosphokinase CRSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
            9270381  probable GTP diphosphokinase CRSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
            4347182  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
            4332791  putative GTP diphosphokinase RSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
            4343883  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
            4333815  adenylosuccinate synthetase 2, chloroplastic [KO:K01939] [EC:6.3.4.4]
            4331792  adenylosuccinate synthetase 1, chloroplastic [KO:K01939] [EC:6.3.4.4]
            4344386  probable AMP deaminase [KO:K01490] [EC:3.5.4.6]
            4338495  probable AMP deaminase [KO:K01490] [EC:3.5.4.6]
            4336412  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
            4330032  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
            4350358  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
            4345177  probable adenylate kinase 5, chloroplastic [KO:K00939] [EC:2.7.4.3]
            4344470  probable adenylate kinase 2, chloroplastic [KO:K00939] [EC:2.7.4.3]
            4351850  adenylate kinase 3 [KO:K00939] [EC:2.7.4.3]
            4331502  probable adenylate kinase 1, chloroplastic isoform X1 [KO:K00939] [EC:2.7.4.3]
            107276068  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
            4337358  probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
            4344534  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
            4343011  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
            4327327  ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
            4349630  bis(5'-adenosyl)-triphosphatase [KO:K01522] [EC:3.6.1.29]
            4351353  bis(5'-adenosyl)-triphosphatase [KO:K01522] [EC:3.6.1.29]
            4351354  bis(5'-adenosyl)-triphosphatase [KO:K01522] [EC:3.6.1.29]
            4334073  ATP-sulfurylase 3, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
            4334932  LOW QUALITY PROTEIN: ATP sulfurylase 2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
            4350977  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
            4343681  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
            9272308  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
            4324793  uricase [KO:K00365] [EC:1.7.3.3]
            4333020  uric acid degradation bifunctional protein TTL isoform X1 [KO:K13484] [EC:3.5.2.17 4.1.1.97]
            4337428  probable allantoinase [KO:K01466] [EC:3.5.2.5]
            4341777  probable allantoate deiminase [KO:K02083] [EC:3.5.3.9]
            4343286  probable (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
            4352706  probable ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
            107279825  urease isoform X1 [KO:K01427] [EC:3.5.1.5]
COMPOUND    C00002  ATP
            C00008  ADP
            C00011  CO2
            C00014  Ammonia
            C00020  AMP
            C00035  GDP
            C00037  Glycine
            C00039  DNA
            C00044  GTP
            C00046  RNA
            C00048  Glyoxylate
            C00053  3'-Phosphoadenylyl sulfate
            C00054  Adenosine 3',5'-bisphosphate
            C00059  Sulfate
            C00064  L-Glutamine
            C00081  ITP
            C00086  Urea
            C00104  IDP
            C00117  D-Ribose 5-phosphate
            C00119  5-Phospho-alpha-D-ribose 1-diphosphate
            C00130  IMP
            C00131  dATP
            C00144  GMP
            C00147  Adenine
            C00169  Carbamoyl phosphate
            C00206  dADP
            C00209  Oxalate
            C00212  Adenosine
            C00224  Adenylyl sulfate
            C00242  Guanine
            C00262  Hypoxanthine
            C00286  dGTP
            C00288  HCO3-
            C00294  Inosine
            C00301  ADP-ribose
            C00330  Deoxyguanosine
            C00360  dAMP
            C00361  dGDP
            C00362  dGMP
            C00366  Urate
            C00385  Xanthine
            C00387  Guanosine
            C00499  Allantoate
            C00559  Deoxyadenosine
            C00575  3',5'-Cyclic AMP
            C00603  (S)-Ureidoglycolate
            C00620  alpha-D-Ribose 1-phosphate
            C00655  Xanthosine 5'-phosphate
            C00700  XTP
            C00802  Oxalureate
            C00942  3',5'-Cyclic GMP
            C01228  Guanosine 3',5'-bis(diphosphate)
            C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
            C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
            C01344  dIDP
            C01345  dITP
            C01367  3'-AMP
            C01444  Oxamate
            C01762  Xanthosine
            C02091  (S)-Ureidoglycine
            C02348  (R)(-)-Allantoin
            C02350  (S)-Allantoin
            C02353  2',3'-Cyclic AMP
            C02718  N-Formiminoglycine
            C03090  5-Phosphoribosylamine
            C03373  Aminoimidazole ribotide
            C03483  Adenosine tetraphosphate
            C03614  Inosine 5'-tetraphosphate
            C03794  N6-(1,2-Dicarboxyethyl)-AMP
            C03838  5'-Phosphoribosylglycinamide
            C04051  5-Amino-4-imidazolecarboxyamide
            C04376  5'-Phosphoribosyl-N-formylglycinamide
            C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
            C04494  Guanosine 3'-diphosphate 5'-triphosphate
            C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
            C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
            C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
            C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
            C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
            C05239  5-Aminoimidazole
            C05512  Deoxyinosine
            C05513  Urate-3-ribonucleoside
            C05515  5-Ureido-4-imidazole carboxylate
            C05516  5-Amino-4-imidazole carboxylate
            C05993  Acetyl adenylate
            C06193  Guanosine 3'-phosphate
            C06194  2',3'-Cyclic GMP
            C06195  Imidazolone
            C06196  2'-Deoxyinosine 5'-phosphate
            C06197  P1,P3-Bis(5'-adenosyl) triphosphate
            C06433  5'-Benzoylphosphoadenosine
            C06435  5'-Butyrylphosphoinosine
            C11821  5-Hydroxyisourate
            C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
            C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
            C22395  N6-Succino-2-amino-2'-deoxyadenylate
            C22441  dZMP
            C22442  dZDP
            C22443  dZTP
            C22499  8-Hydroxyadenine
            C22500  2,8-Dihydroxyadenine
REFERENCE   PMID:10601204
  AUTHORS   Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  TITLE     Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  JOURNAL   J Bacteriol 181:7479-84 (1999)
            DOI:10.1128/JB.181.24.7479-7484.1999
REFERENCE   PMID:10986234
  AUTHORS   Xi H, Schneider BL, Reitzer L.
  TITLE     Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  JOURNAL   J Bacteriol 182:5332-41 (2000)
            DOI:10.1128/JB.182.19.5332-5341.2000
REL_PATHWAY osa00030  Pentose phosphate pathway
            osa00220  Arginine biosynthesis
            osa00250  Alanine, aspartate and glutamate metabolism
            osa00260  Glycine, serine and threonine metabolism
            osa00340  Histidine metabolism
            osa00630  Glyoxylate and dicarboxylate metabolism
            osa00730  Thiamine metabolism
            osa00740  Riboflavin metabolism
            osa00790  Folate biosynthesis
KO_PATHWAY  ko00230
///
