ENTRY       mtr00630                    Pathway
NAME        Glyoxylate and dicarboxylate metabolism - Medicago truncatula (barrel medic)
CLASS       Metabolism; Carbohydrate metabolism
PATHWAY_MAP mtr00630  Glyoxylate and dicarboxylate metabolism
MODULE      mtr_M00012  Glyoxylate cycle [PATH:mtr00630]
            mtr_M00532  Photorespiration [PATH:mtr00630]
DBLINKS     GO: 0046487 0043648
ORGANISM    Medicago truncatula (barrel medic) [GN:mtr]
GENE        25492112  isocitrate lyase 2 [KO:K01637] [EC:4.1.3.1]
            11437257  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
            11422889  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            25486581  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            25500778  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
            11436578  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
            11430390  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
            25484448  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
            25502524  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
            11405683  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
            11420535  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
            120580136  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
            11445289  citrate synthase, glyoxysomal isoform X1 [KO:K01647] [EC:2.3.3.1]
            11437065  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
            25486862  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
            11416041  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            11440920  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            11421844  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
            25481093  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            25494326  LOW QUALITY PROTEIN: acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            11424070  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            25487060  peroxisomal (S)-2-hydroxy-acid oxidase isoform X1 [KO:K11517] [EC:1.1.3.15]
            120577450  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
            120577451  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
            120577452  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
            120577602  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
            120577617  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
            25490307  catalase-4 [KO:K03781] [EC:1.11.1.6]
            25501000  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
            25500766  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            11432939  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            25485608  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
            11410757  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            11436721  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            120576791  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
            120579494  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
            120580073  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
            120580927  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
            5333101  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
            25497418  ribulose bisphosphate carboxylase small chain 3A, chloroplastic [KO:K01602] [EC:4.1.1.39]
            112416064  ribulose bisphosphate carboxylase small chain 3A, chloroplastic [KO:K01602] [EC:4.1.1.39]
            25497422  ribulose bisphosphate carboxylase small chain 3A, chloroplastic [KO:K01602] [EC:4.1.1.39]
            25497424  ribulose bisphosphate carboxylase small chain 3A, chloroplastic [KO:K01602] [EC:4.1.1.39]
            25497425  ribulose bisphosphate carboxylase small chain 3A, chloroplastic [KO:K01602] [EC:4.1.1.39]
            11446762  ribulose bisphosphate carboxylase small chain clone 512 [KO:K01602] [EC:4.1.1.39]
            11420076  ribulose bisphosphate carboxylase small chain, chloroplastic isoform X3 [KO:K01602] [EC:4.1.1.39]
            11440516  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
            11423326  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
            11409437  glutamate--glyoxylate aminotransferase 2 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
            11415038  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
            11406645  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
            11431638  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
            120575736  glutamine synthetase leaf isozyme, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
            25486062  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
            11427840  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
            11445860  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
            11415840  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
            11424199  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
            11420162  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
            11442479  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
            11405458  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
            11429401  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
            11415278  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
            11437303  aminomethyltransferase, mitochondrial isoform X1 [KO:K00605] [EC:2.1.2.10]
            11408806  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
            11422305  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
            25494137  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
            11443425  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
            11433975  glycine cleavage system H protein, mitochondrial [KO:K02437]
            11436362  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
            25495172  formate dehydrogenase 1, mitochondrial [KO:K00122] [EC:1.17.1.9]
            11426938  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
            11428500  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
            25493523  formamidase isoform X2 [KO:K01455] [EC:3.5.1.49]
            11407788  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
COMPOUND    C00007  Oxygen
            C00011  CO2
            C00014  Ammonia
            C00022  Pyruvate
            C00024  Acetyl-CoA
            C00025  L-Glutamate
            C00026  2-Oxoglutarate
            C00027  Hydrogen peroxide
            C00033  Acetate
            C00036  Oxaloacetate
            C00037  Glycine
            C00042  Succinate
            C00048  Glyoxylate
            C00058  Formate
            C00064  L-Glutamine
            C00065  L-Serine
            C00091  Succinyl-CoA
            C00100  Propanoyl-CoA
            C00111  Glycerone phosphate
            C00136  Butanoyl-CoA
            C00149  (S)-Malate
            C00158  Citrate
            C00160  Glycolate
            C00168  Hydroxypyruvate
            C00197  3-Phospho-D-glycerate
            C00209  Oxalate
            C00258  D-Glycerate
            C00266  Glycolaldehyde
            C00311  Isocitrate
            C00313  Oxalyl-CoA
            C00332  Acetoacetyl-CoA
            C00417  cis-Aconitate
            C00552  meso-Tartaric acid
            C00631  2-Phospho-D-glycerate
            C00683  (S)-Methylmalonyl-CoA
            C00798  Formyl-CoA
            C00877  Crotonoyl-CoA
            C00888  Pentanoyl-CoA
            C00898  (R,R)-Tartaric acid
            C00975  Dihydroxyfumarate
            C00988  2-Phosphoglycolate
            C01127  4-Hydroxy-2-oxoglutarate
            C01146  2-Hydroxy-3-oxopropanoate
            C01182  D-Ribulose 1,5-bisphosphate
            C01213  (R)-Methylmalonyl-CoA
            C01380  Ethylene glycol
            C01732  Mesaconate
            C01989  3-Ethylmalate
            C01990  3-Oxalomalate
            C02123  3-Propylmalate
            C02405  Formyl phosphate
            C03217  2-Hydroxy-3-oxoadipate
            C03459  2-Hydroxy-3-oxosuccinate
            C03548  trans-2,3-Epoxysuccinate
            C03561  (R)-3-Hydroxybutanoyl-CoA
            C03618  L-threo-3-Methylaspartate
            C04348  L-Malyl-CoA
            C06027  L-erythro-3-Methylmalyl-CoA
            C06028  2-Methylfumaryl-CoA
            C06049  N-Formylderivatives
            C18026  (2S)-Ethylmalonyl-CoA
            C18324  (2S)-Methylsuccinyl-CoA
            C20238  (2R)-Ethylmalonyl-CoA
            C22337  D-Ribulose 1-phosphate
REFERENCE   PMID:10978349
  AUTHORS   Njau RK, Herndon CA, Hawes JW.
  TITLE     Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  JOURNAL   J Biol Chem 275:38780-6 (2000)
            DOI:10.1074/jbc.M007432200
REFERENCE   PMID:18065535
  AUTHORS   Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  TITLE     Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  JOURNAL   J Bacteriol 190:1366-74 (2008)
            DOI:10.1128/JB.01621-07
REFERENCE   PMID:18819910
  AUTHORS   Erb TJ, Retey J, Fuchs G, Alber BE
  TITLE     Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  JOURNAL   J Biol Chem 283:32283-93 (2008)
            DOI:10.1074/jbc.M805527200
REFERENCE   PMID:9596633
  AUTHORS   Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  TITLE     Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  JOURNAL   Plant Cell 10:741-52 (1998)
            DOI:10.1105/tpc.10.5.741
REFERENCE   PMID:16407450
  AUTHORS   Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  TITLE     Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  JOURNAL   Plant Physiol 140:444-56 (2006)
            DOI:10.1104/pp.105.071910
REFERENCE   PMID:21252347
  AUTHORS   Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  TITLE     A methylaspartate cycle in haloarchaea.
  JOURNAL   Science 331:334-7 (2011)
            DOI:10.1126/science.1196544
REFERENCE   PMID:11513957
  AUTHORS   Serrano JA, Bonete MJ
  TITLE     Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  JOURNAL   Biochim Biophys Acta 1520:154-62 (2001)
            DOI:10.1016/S0167-4781(01)00263-9
REL_PATHWAY mtr00010  Glycolysis / Gluconeogenesis
            mtr00020  Citrate cycle (TCA cycle)
            mtr00030  Pentose phosphate pathway
            mtr00053  Ascorbate and aldarate metabolism
            mtr00071  Fatty acid degradation
            mtr00230  Purine metabolism
            mtr00250  Alanine, aspartate and glutamate metabolism
            mtr00260  Glycine, serine and threonine metabolism
            mtr00620  Pyruvate metabolism
            mtr00710  Carbon fixation in photosynthetic organisms
            mtr00750  Vitamin B6 metabolism
            mtr00910  Nitrogen metabolism
KO_PATHWAY  ko00630
///
