ENTRY       gmx04136                    Pathway
NAME        Autophagy - other - Glycine max (soybean)
DESCRIPTION Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
CLASS       Cellular Processes; Transport and catabolism
PATHWAY_MAP gmx04136  Autophagy - other
DBLINKS     GO: 0006914
ORGANISM    Glycine max (soybean) [GN:gmx]
GENE        100777178  regulatory-associated protein of TOR 1 isoform X2 [KO:K07204]
            100779159  regulatory-associated protein of TOR 1 isoform X1 [KO:K07204]
            100816558  serine/threonine-protein kinase TOR [KO:K07203] [EC:2.7.11.1]
            100816446  serine/threonine-protein kinase TOR [KO:K07203] [EC:2.7.11.1]
            100781599  uncharacterized protein LOC100781599 [KO:K08266]
            100812024  target of rapamycin complex subunit LST8-1 [KO:K08266]
            100791596  serine/threonine-protein kinase ATG1c isoform X1 [KO:K08269] [EC:2.7.11.1]
            100789255  serine/threonine-protein kinase ATG1c [KO:K08269] [EC:2.7.11.1]
            100778254  autophagy-related protein 13a [KO:K08331]
            100798585  autophagy-related protein 13b [KO:K08331]
            100818104  autophagy-related protein 13a [KO:K08331]
            100816476  autophagy-related protein 13b [KO:K08331]
            100811916  autophagy-related protein 101-like [KO:K19730]
            100794018  autophagy-related protein 11 [KO:K08330]
            100792447  autophagy-related protein 11 [KO:K08330]
            100780847  PP2A regulatory subunit TAP46 isoform X2 [KO:K17606]
            100807894  PP2A regulatory subunit TAP46 [KO:K17606]
            100783950  serine/threonine-protein phosphatase PP2A-5 catalytic subunit [KO:K04382] [EC:3.1.3.16]
            100784312  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
            100794029  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
            100801108  serine/threonine-protein phosphatase PP2A-4 catalytic subunit isoform X1 [KO:K04382] [EC:3.1.3.16]
            100807329  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
            100798408  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
            100817449  serine/threonine-protein phosphatase PP2A-4 catalytic subunit isoform X1 [KO:K04382] [EC:3.1.3.16]
            100782279  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
            100775812  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
            100812326  serine/threonine-protein phosphatase PP2A-2 catalytic subunit [KO:K04382] [EC:3.1.3.16]
            100777405  autophagy-related protein 9 [KO:K17907]
            100779344  autophagy-related protein 9 [KO:K17907]
            100809347  autophagy-related protein 9 [KO:K17907]
            732654  autophagy-related protein 9 [KO:K17907]
            100802641  autophagy-related protein 2 [KO:K17906]
            100805552  autophagy-related protein 2 [KO:K17906]
            100794908  autophagy-related protein 18b isoform X1 [KO:K17908]
            100803048  autophagy-related protein 18b [KO:K17908]
            100820465  autophagy-related protein 18b isoform X2 [KO:K17908]
            100816367  autophagy-related protein 18b [KO:K17908]
            100812721  beclin-1-like protein [KO:K08334]
            732646  ATG6; beclin 1 protein [KO:K08334]
            547983  phosphatidylinositol 3-kinase, root isoform [KO:K00914] [EC:2.7.1.137]
            100778348  phosphatidylinositol 3-kinase, nodule isoform [KO:K00914] [EC:2.7.1.137]
            100796837  serine/threonine-protein kinase VPS15 isoform X1 [KO:K08333] [EC:2.7.11.1]
            100818467  serine/threonine-protein kinase VPS15 [KO:K08333] [EC:2.7.11.1]
            100527905  uncharacterized protein LOC100527905 [KO:K08336]
            100527733  uncharacterized protein LOC100527733 [KO:K08336]
            732567  autophagy protein 5 [KO:K08339]
            100789045  uncharacterized protein LOC100789045 [KO:K08339]
            100806054  autophagy-related protein 16 [KO:K17890]
            100778336  autophagy-related protein 16 [KO:K17890]
            100781725  ATG7; autophagy-related protein ATG7 [KO:K08337]
            100786914  ubiquitin-like-conjugating enzyme ATG10 [KO:K17888]
            100808589  ubiquitin-like-conjugating enzyme ATG10 [KO:K17888]
            100787410  ATG3A; autophagy-related protein 3a isoform 1 [KO:K08343]
            100814257  autophagy-related protein 3 isoform X1 [KO:K08343]
            100301895  ATG8d; autophagy-related protein 8d [KO:K08341]
            100499835  autophagy-related protein 8f-like [KO:K08341]
            100527884  ATG8C; autophagy-related protein 8c [KO:K08341]
            100781703  autophagy-related protein 8f [KO:K08341]
            100818620  autophagy-related protein 8f-like [KO:K08341]
            100818315  autophagy-related protein 8f [KO:K08341]
            100500165  uncharacterized protein LOC100500165 [KO:K08341]
            100305892  uncharacterized protein LOC100305892 [KO:K08341]
            100500023  uncharacterized protein LOC100500023 [KO:K08341]
            100527345  UBQ superfamily protein [KO:K08341]
            100301894  ATG8i; autophagy-related protein 8i [KO:K08341]
            100784677  autophagy-related protein 8C [KO:K08341]
            100809664  cysteine protease ATG4 isoform X1 [KO:K08342] [EC:3.4.22.-]
            100810317  cysteine protease ATG4 isoform X1 [KO:K08342] [EC:3.4.22.-]
COMPOUND    C00350  Phosphatidylethanolamine
            C01194  1-Phosphatidyl-D-myo-inositol
            C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
REFERENCE   PMID:20962583
  AUTHORS   Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  TITLE     Autophagy in protists.
  JOURNAL   Autophagy 7:127-58 (2011)
            DOI:10.4161/auto.7.2.13310
REFERENCE   PMID:21660427
  AUTHORS   Avin-Wittenberg T, Honig A, Galili G
  TITLE     Variations on a theme: plant autophagy in comparison to yeast and mammals.
  JOURNAL   Protoplasma 249:285-99 (2012)
            DOI:10.1007/s00709-011-0296-z
REFERENCE   PMID:22242963
  AUTHORS   Liu Y, Bassham DC
  TITLE     Autophagy: pathways for self-eating in plant cells.
  JOURNAL   Annu Rev Plant Biol 63:215-37 (2012)
            DOI:10.1146/annurev-arplant-042811-105441
REFERENCE   PMID:22764279
  AUTHORS   Yoshimoto K
  TITLE     Beginning to understand autophagy, an intracellular self-degradation system in plants.
  JOURNAL   Plant Cell Physiol 53:1355-65 (2012)
            DOI:10.1093/pcp/pcs099
REFERENCE   PMID:24563201
  AUTHORS   Li F, Chung T, Vierstra RD
  TITLE     AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  JOURNAL   Plant Cell 26:788-807 (2014)
            DOI:10.1105/tpc.113.120014
REFERENCE   PMID:26598298
  AUTHORS   Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  TITLE     Autophagy in Plants--What's New on the Menu?
  JOURNAL   Trends Plant Sci 21:134-44 (2016)
            DOI:10.1016/j.tplants.2015.10.008
REFERENCE   PMID:26614870
  AUTHORS   Yang X, Bassham DC
  TITLE     New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  JOURNAL   Int Rev Cell Mol Biol 320:1-40 (2015)
            DOI:10.1016/bs.ircmb.2015.07.005
KO_PATHWAY  ko04136
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