ENTRY       gmx03060                    Pathway
NAME        Protein export - Glycine max (soybean)
DESCRIPTION The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.
CLASS       Genetic Information Processing; Folding, sorting and degradation
PATHWAY_MAP gmx03060  Protein export
DBLINKS     GO: 0043952 0043953
ORGANISM    Glycine max (soybean) [GN:gmx]
GENE        100787806  mitochondrial inner membrane protein OXA1 isoform X1 [KO:K03217]
            100817052  mitochondrial inner membrane protein OXA1 [KO:K03217]
            100813782  inner membrane protein PPF-1, chloroplastic isoform X1 [KO:K03217]
            100815190  ALBINO3-like protein 1, chloroplastic [KO:K03217]
            100817173  inner membrane protein PPF-1, chloroplastic isoform X1 [KO:K03217]
            100792907  mitochondrial inner membrane protein OXA1 [KO:K03217]
            100802546  ALBINO3-like protein 1, chloroplastic [KO:K03217]
            100793437  protein translocase subunit SECA2, chloroplastic isoform X2 [KO:K03070] [EC:7.4.2.8]
            100803415  protein translocase subunit SecA, chloroplastic isoform X1 [KO:K03070] [EC:7.4.2.8]
            100815860  protein translocase subunit SecA, chloroplastic isoform X1 [KO:K03070] [EC:7.4.2.8]
            100782581  signal recognition particle 54 kDa protein, chloroplastic [KO:K03106] [EC:3.6.5.4]
            100792778  signal recognition particle 54 kDa protein 2 [KO:K03106] [EC:3.6.5.4]
            100811698  signal recognition particle 54 kDa protein 2 [KO:K03106] [EC:3.6.5.4]
            100815799  signal recognition particle 54 kDa protein 2 [KO:K03106] [EC:3.6.5.4]
            100789217  signal recognition particle 54 kDa protein 2 [KO:K03106] [EC:3.6.5.4]
            100791073  cell division protein FtsY homolog, chloroplastic isoform X2 [KO:K03110]
            100809203  cell division protein FtsY homolog, chloroplastic [KO:K03110]
            100810430  preprotein translocase subunit SECY, chloroplastic isoform X1 [KO:K10956]
            100817566  protein transport protein Sec61 subunit alpha [KO:K10956]
            100798372  uncharacterized protein LOC100798372 [KO:K10956]
            100809703  protein transport protein Sec61 subunit alpha [KO:K10956]
            100795147  protein transport protein Sec61 subunit alpha [KO:K10956]
            100500335  protein transport protein Sec61 subunit beta [KO:K09481]
            100795313  protein transport protein Sec61 subunit beta-like [KO:K09481]
            100790740  protein transport protein Sec61 subunit beta [KO:K09481]
            100815435  protein transport protein Sec61 subunit beta-like [KO:K09481]
            100814692  protein transport protein Sec61 subunit beta [KO:K09481]
            100795094  LOW QUALITY PROTEIN: protein transport protein Sec61 subunit beta [KO:K09481]
            106795243  protein transport protein Sec61 subunit beta [KO:K09481]
            100789824  protein transport protein Sec61 subunit gamma [KO:K07342]
            100805604  protein transport protein Sec61 subunit gamma [KO:K07342]
            100306386  protein transport protein Sec61 subunit gamma [KO:K07342]
            100527335  transport protein Sec61 subunit gamma [KO:K07342]
            100784481  uncharacterized protein LOC100784481 [KO:K12275]
            100809457  uncharacterized protein LOC100809457 [KO:K12275]
            100776439  dnaJ protein ERDJ2A isoform X1 [KO:K09540]
            100809969  dnaJ protein ERDJ2A [KO:K09540]
            547839  BIP4; ER-binding immunoglobulin protein BiP4 precursor [KO:K09490] [EC:3.6.4.10]
            547840  BIP2; ER-binding immunoglobulin protein BIP2 precursor [KO:K09490] [EC:3.6.4.10]
            547838  luminal-binding protein 5 [KO:K09490] [EC:3.6.4.10]
            100803843  Hsp 70 family protein precursor [KO:K09490] [EC:3.6.4.10]
            100500606  putative signal recognition particle SRP9 [KO:K03109]
            100776490  signal recognition particle 9 kDa protein [KO:K03109]
            100811012  signal recognition particle 9 kDa protein [KO:K03109]
            100788603  signal recognition particle 9 kDa protein [KO:K03109]
            100526909  signal recognition particle 14 [KO:K03104]
            100500453  putative signal recognition particle, SRP9/SRP14 subunit [KO:K03104]
            100810125  signal recognition particle subunit SRP72 [KO:K03108]
            100791472  signal recognition particle subunit SRP72 [KO:K03108]
            100777159  signal recognition particle subunit SRP68-like isoform X1 [KO:K03107]
            100816486  signal recognition particle subunit SRP68 [KO:K03107]
            100801614  uncharacterized protein LOC100801614 [KO:K03105]
            100500027  uncharacterized protein LOC100500027 [KO:K03105]
            100805636  signal recognition particle receptor subunit alpha [KO:K13431]
            100783780  signal recognition particle receptor subunit alpha [KO:K13431]
            100815500  signal recognition particle receptor subunit beta [KO:K12272]
            100800572  signal recognition particle receptor subunit beta [KO:K12272]
            100804789  signal recognition particle receptor subunit beta [KO:K12272]
            100500409  mttA/Hcf106 domain-containing protein [KO:K03116]
            100306385  uncharacterized protein LOC100306385 [KO:K03116]
            100797959  sec-independent protein translocase protein TATA, chloroplastic [KO:K03116]
            100807037  sec-independent protein translocase protein TATA, chloroplastic [KO:K03116]
            100801670  sec-independent periplasmic protein translocase-like protein isoform 1 [KO:K03118]
            100788116  sec-independent protein translocase protein TATC, chloroplastic isoform X1 [KO:K03118]
            100306121  chloroplast processing peptidase-like [KO:K03100] [EC:3.4.21.89]
            100817525  probable thylakoidal processing peptidase 2, chloroplastic [KO:K03100] [EC:3.4.21.89]
            100785296  chloroplast processing peptidase [KO:K03100] [EC:3.4.21.89]
            100802457  thylakoidal processing peptidase 1, chloroplastic [KO:K03100] [EC:3.4.21.89]
            100815810  chloroplast processing peptidase [KO:K03100] [EC:3.4.21.89]
            100526911  probable signal peptidase complex subunit 1 [KO:K12946] [EC:3.4.-.-]
            100801319  probable signal peptidase complex subunit 1 [KO:K12946] [EC:3.4.-.-]
            100797100  probable signal peptidase complex subunit 1 [KO:K12946] [EC:3.4.-.-]
            100777545  probable signal peptidase complex subunit 1 [KO:K12946] [EC:3.4.-.-]
            100499695  uncharacterized protein LOC100499695 [KO:K12947] [EC:3.4.-.-]
            100305648  uncharacterized protein LOC100305648 [KO:K12947] [EC:3.4.-.-]
            100499792  signal peptidase complex subunit 3 precursor [KO:K12948] [EC:3.4.-.-]
            100306631  signal peptidase complex subunit precursor [KO:K12948] [EC:3.4.-.-]
            100499788  uncharacterized protein LOC100499788 precursor [KO:K12948] [EC:3.4.-.-]
            100812692  signal peptidase complex subunit 3A [KO:K12948] [EC:3.4.-.-]
            100807064  signal peptidase complex catalytic subunit SEC11C-like [KO:K13280] [EC:3.4.21.89]
            100797179  signal peptidase complex catalytic subunit SEC11A [KO:K13280] [EC:3.4.21.89]
            100797511  LOW QUALITY PROTEIN: signal peptidase complex catalytic subunit SEC11A [KO:K13280] [EC:3.4.21.89]
            100526949  uncharacterized protein LOC100526949 [KO:K09647] [EC:3.4.21.-]
            100527597  uncharacterized protein LOC100527597 [KO:K09647] [EC:3.4.21.-]
            100805997  mitochondrial inner membrane protease subunit 1 [KO:K09647] [EC:3.4.21.-]
            100818627  mitochondrial inner membrane protease subunit 1 [KO:K09647] [EC:3.4.21.-]
            100807792  mitochondrial inner membrane protease subunit 1 [KO:K09647] [EC:3.4.21.-]
            100499932  uncharacterized protein LOC100499932 [KO:K09648] [EC:3.4.21.-]
            100527429  uncharacterized protein LOC100527429 [KO:K09648] [EC:3.4.21.-]
REFERENCE   PMID:10087917
  AUTHORS   Dalbey RE, Robinson C.
  TITLE     Protein translocation into and across the bacterial plasma membrane and the plant thylakoid membrane.
  JOURNAL   Trends Biochem Sci 24:17-22 (1999)
            DOI:10.1016/S0968-0004(98)01333-4
REFERENCE   PMID:10652088
  AUTHORS   Berks BC, Sargent F, Palmer T.
  TITLE     The Tat protein export pathway.
  JOURNAL   Mol Microbiol 35:260-74 (2000)
            DOI:10.1046/j.1365-2958.2000.01719.x
REFERENCE   PMID:10747959
  AUTHORS   Wexler M, Sargent F, Jack RL, Stanley NR, Bogsch EG, Robinson C, Berks BC, Palmer T.
  TITLE     TatD is a cytoplasmic protein with DNase activity. No requirement for TatD family proteins in sec-independent protein export.
  JOURNAL   J Biol Chem 275:16717-22 (2000)
            DOI:10.1074/jbc.M000800200
REFERENCE   PMID:11007775
  AUTHORS   Jongbloed JD, Martin U, Antelmann H, Hecker M, Tjalsma H, Venema G, Bron S, van Dijl JM, Muller J.
  TITLE     TatC is a specificity determinant for protein secretion via the twin-arginine translocation pathway.
  JOURNAL   J Biol Chem 275:41350-7 (2000)
            DOI:10.1074/jbc.M004887200
REFERENCE   PMID:18046402
  AUTHORS   Rapoport TA
  TITLE     Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes.
  JOURNAL   Nature 450:663-9 (2007)
            DOI:10.1038/nature06384
REFERENCE   PMID:17368028
  AUTHORS   Flower AM
  TITLE     The SecY translocation complex: convergence of genetics and structure.
  JOURNAL   Trends Microbiol 15:203-10 (2007)
            DOI:10.1016/j.tim.2007.03.001
REFERENCE   PMID:16212506
  AUTHORS   Osborne AR, Rapoport TA, van den Berg B
  TITLE     Protein translocation by the Sec61/SecY channel.
  JOURNAL   Annu Rev Cell Dev Biol 21:529-50 (2005)
            DOI:10.1146/annurev.cellbio.21.012704.133214
REFERENCE   PMID:12475201
  AUTHORS   Paetzel M, Karla A, Strynadka NC, Dalbey RE
  TITLE     Signal peptidases.
  JOURNAL   Chem Rev 102:4549-80 (2002)
            DOI:10.1021/cr010166y
REFERENCE   PMID:10924740
  AUTHORS   Paetzel M, Dalbey RE, Strynadka NC
  TITLE     The structure and mechanism of bacterial type I signal peptidases. A novel antibiotic target.
  JOURNAL   Pharmacol Ther 87:27-49 (2000)
            DOI:10.1016/S0163-7258(00)00064-4
REFERENCE   PMID:17259602
  AUTHORS   Ng SY, Chaban B, VanDyke DJ, Jarrell KF
  TITLE     Archaeal signal peptidases.
  JOURNAL   Microbiology 153:305-14 (2007)
            DOI:10.1099/mic.0.2006/003087-0
REFERENCE   PMID:19299134
  AUTHORS   Desvaux M, Hebraud M, Talon R, Henderson IR
  TITLE     Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  JOURNAL   Trends Microbiol 17:139-45 (2009)
            DOI:10.1016/j.tim.2009.01.004
REFERENCE   PMID:15063851
  AUTHORS   Nakatogawa H, Murakami A, Ito K
  TITLE     Control of SecA and SecM translation by protein secretion.
  JOURNAL   Curr Opin Microbiol 7:145-50 (2004)
            DOI:10.1016/j.mib.2004.01.001
KO_PATHWAY  ko03060
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