ENTRY       gmx01100                    Pathway
NAME        Metabolic pathways - Glycine max (soybean)
PATHWAY_MAP gmx01100  Metabolic pathways
MODULE      gmx_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:gmx01100]
            gmx_M00002  Glycolysis, core module involving three-carbon compounds [PATH:gmx01100]
            gmx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gmx01100]
            gmx_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gmx01100]
            gmx_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:gmx01100]
            gmx_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gmx01100]
            gmx_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gmx01100]
            gmx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gmx01100]
            gmx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gmx01100]
            gmx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gmx01100]
            gmx_M00012  Glyoxylate cycle [PATH:gmx01100]
            gmx_M00015  Proline biosynthesis, glutamate => proline [PATH:gmx01100]
            gmx_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:gmx01100]
            gmx_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:gmx01100]
            gmx_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:gmx01100]
            gmx_M00021  Cysteine biosynthesis, serine => cysteine [PATH:gmx01100]
            gmx_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:gmx01100]
            gmx_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:gmx01100]
            gmx_M00026  Histidine biosynthesis, PRPP => histidine [PATH:gmx01100]
            gmx_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:gmx01100]
            gmx_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:gmx01100]
            gmx_M00034  Methionine salvage pathway [PATH:gmx01100]
            gmx_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:gmx01100]
            gmx_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:gmx01100]
            gmx_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:gmx01100]
            gmx_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:gmx01100]
            gmx_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:gmx01100]
            gmx_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:gmx01100]
            gmx_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:gmx01100]
            gmx_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:gmx01100]
            gmx_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gmx01100]
            gmx_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gmx01100]
            gmx_M00055  N-glycan precursor biosynthesis [PATH:gmx01100]
            gmx_M00065  GPI-anchor biosynthesis, core oligosaccharide [PATH:gmx01100]
            gmx_M00072  N-glycosylation by oligosaccharyltransferase [PATH:gmx01100]
            gmx_M00073  N-glycan precursor trimming [PATH:gmx01100]
            gmx_M00081  Pectin degradation [PATH:gmx01100]
            gmx_M00082  Fatty acid biosynthesis, initiation [PATH:gmx01100]
            gmx_M00083  Fatty acid biosynthesis, elongation [PATH:gmx01100]
            gmx_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:gmx01100]
            gmx_M00087  beta-Oxidation [PATH:gmx01100]
            gmx_M00089  Triacylglycerol biosynthesis [PATH:gmx01100]
            gmx_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:gmx01100]
            gmx_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:gmx01100]
            gmx_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:gmx01100]
            gmx_M00097  beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:gmx01100]
            gmx_M00098  Acylglycerol degradation [PATH:gmx01100]
            gmx_M00100  Sphingosine degradation [PATH:gmx01100]
            gmx_M00112  Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:gmx01100]
            gmx_M00113  Jasmonic acid biosynthesis [PATH:gmx01100]
            gmx_M00114  Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:gmx01100]
            gmx_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:gmx01100]
            gmx_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:gmx01100]
            gmx_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:gmx01100]
            gmx_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:gmx01100]
            gmx_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:gmx01100]
            gmx_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:gmx01100]
            gmx_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:gmx01100]
            gmx_M00132  Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:gmx01100]
            gmx_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:gmx01100]
            gmx_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:gmx01100]
            gmx_M00138  Flavonoid biosynthesis, naringenin => pelargonidin [PATH:gmx01100]
            gmx_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:gmx01100]
            gmx_M00166  Reductive pentose phosphate cycle, ribulose-5P => glyceraldehyde-3P [PATH:gmx01100]
            gmx_M00167  Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P [PATH:gmx01100]
            gmx_M00168  CAM (Crassulacean acid metabolism), dark [PATH:gmx01100]
            gmx_M00169  CAM (Crassulacean acid metabolism), light [PATH:gmx01100]
            gmx_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:gmx01100]
            gmx_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:gmx01100]
            gmx_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:gmx01100]
            gmx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gmx01100]
            gmx_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:gmx01100]
            gmx_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:gmx01100]
            gmx_M00371  Castasterone biosynthesis, campesterol => castasterone [PATH:gmx01100]
            gmx_M00372  Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:gmx01100]
            gmx_M00415  Fatty acid elongation in endoplasmic reticulum [PATH:gmx01100]
            gmx_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:gmx01100]
            gmx_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:gmx01100]
            gmx_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:gmx01100]
            gmx_M00532  Photorespiration [PATH:gmx01100]
            gmx_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:gmx01100]
            gmx_M00555  Betaine biosynthesis, choline => betaine [PATH:gmx01100]
            gmx_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:gmx01100]
            gmx_M00844  Arginine biosynthesis, ornithine => arginine [PATH:gmx01100]
            gmx_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:gmx01100]
            gmx_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:gmx01100]
            gmx_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:gmx01100]
            gmx_M00882  Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:gmx01100]
            gmx_M00892  UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:gmx01100]
            gmx_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:gmx01100]
            gmx_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:gmx01100]
            gmx_M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:gmx01100]
            gmx_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:gmx01100]
            gmx_M00917  Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:gmx01100]
            gmx_M00927  Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:gmx01100]
            gmx_M00928  Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:gmx01100]
            gmx_M00932  Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:gmx01100]
            gmx_M00933  Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:gmx01100]
            gmx_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:gmx01100]
            gmx_M00940  Flavanone biosynthesis, p-coumaroyl-CoA => liquiritigenin [PATH:gmx01100]
            gmx_M00941  Isoflavone biosynthesis, liquiritigenin/naringenin => daidzein/genistein [PATH:gmx01100]
            gmx_M00942  Pterocarpan biosynthesis, daidzein => medicarpin [PATH:gmx01100]
ORGANISM    Glycine max (soybean) [GN:gmx]
REL_PATHWAY gmx00010  Glycolysis / Gluconeogenesis
            gmx00020  Citrate cycle (TCA cycle)
            gmx00030  Pentose phosphate pathway
            gmx00040  Pentose and glucuronate interconversions
            gmx00051  Fructose and mannose metabolism
            gmx00052  Galactose metabolism
            gmx00053  Ascorbate and aldarate metabolism
            gmx00061  Fatty acid biosynthesis
            gmx00062  Fatty acid elongation
            gmx00071  Fatty acid degradation
            gmx00073  Cutin, suberine and wax biosynthesis
            gmx00100  Steroid biosynthesis
            gmx00130  Ubiquinone and other terpenoid-quinone biosynthesis
            gmx00190  Oxidative phosphorylation
            gmx00195  Photosynthesis
            gmx00196  Photosynthesis - antenna proteins
            gmx00220  Arginine biosynthesis
            gmx00230  Purine metabolism
            gmx00232  Caffeine metabolism
            gmx00240  Pyrimidine metabolism
            gmx00250  Alanine, aspartate and glutamate metabolism
            gmx00260  Glycine, serine and threonine metabolism
            gmx00261  Monobactam biosynthesis
            gmx00270  Cysteine and methionine metabolism
            gmx00280  Valine, leucine and isoleucine degradation
            gmx00290  Valine, leucine and isoleucine biosynthesis
            gmx00300  Lysine biosynthesis
            gmx00310  Lysine degradation
            gmx00330  Arginine and proline metabolism
            gmx00340  Histidine metabolism
            gmx00350  Tyrosine metabolism
            gmx00360  Phenylalanine metabolism
            gmx00380  Tryptophan metabolism
            gmx00400  Phenylalanine, tyrosine and tryptophan biosynthesis
            gmx00410  beta-Alanine metabolism
            gmx00430  Taurine and hypotaurine metabolism
            gmx00440  Phosphonate and phosphinate metabolism
            gmx00450  Selenocompound metabolism
            gmx00460  Cyanoamino acid metabolism
            gmx00470  D-Amino acid metabolism
            gmx00480  Glutathione metabolism
            gmx00500  Starch and sucrose metabolism
            gmx00510  N-Glycan biosynthesis
            gmx00511  Other glycan degradation
            gmx00513  Various types of N-glycan biosynthesis
            gmx00514  Other types of O-glycan biosynthesis
            gmx00520  Amino sugar and nucleotide sugar metabolism
            gmx00531  Glycosaminoglycan degradation
            gmx00543  Exopolysaccharide biosynthesis
            gmx00561  Glycerolipid metabolism
            gmx00562  Inositol phosphate metabolism
            gmx00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
            gmx00564  Glycerophospholipid metabolism
            gmx00565  Ether lipid metabolism
            gmx00590  Arachidonic acid metabolism
            gmx00591  Linoleic acid metabolism
            gmx00592  alpha-Linolenic acid metabolism
            gmx00600  Sphingolipid metabolism
            gmx00601  Glycosphingolipid biosynthesis - lacto and neolacto series
            gmx00603  Glycosphingolipid biosynthesis - globo and isoglobo series
            gmx00604  Glycosphingolipid biosynthesis - ganglio series
            gmx00620  Pyruvate metabolism
            gmx00630  Glyoxylate and dicarboxylate metabolism
            gmx00640  Propanoate metabolism
            gmx00650  Butanoate metabolism
            gmx00660  C5-Branched dibasic acid metabolism
            gmx00670  One carbon pool by folate
            gmx00710  Carbon fixation in photosynthetic organisms
            gmx00730  Thiamine metabolism
            gmx00740  Riboflavin metabolism
            gmx00750  Vitamin B6 metabolism
            gmx00760  Nicotinate and nicotinamide metabolism
            gmx00770  Pantothenate and CoA biosynthesis
            gmx00780  Biotin metabolism
            gmx00785  Lipoic acid metabolism
            gmx00790  Folate biosynthesis
            gmx00860  Porphyrin metabolism
            gmx00900  Terpenoid backbone biosynthesis
            gmx00903  Limonene and pinene degradation
            gmx00904  Diterpenoid biosynthesis
            gmx00905  Brassinosteroid biosynthesis
            gmx00906  Carotenoid biosynthesis
            gmx00908  Zeatin biosynthesis
            gmx00909  Sesquiterpenoid and triterpenoid biosynthesis
            gmx00910  Nitrogen metabolism
            gmx00920  Sulfur metabolism
            gmx00940  Phenylpropanoid biosynthesis
            gmx00941  Flavonoid biosynthesis
            gmx00942  Anthocyanin biosynthesis
            gmx00943  Isoflavonoid biosynthesis
            gmx00944  Flavone and flavonol biosynthesis
            gmx00950  Isoquinoline alkaloid biosynthesis
            gmx00960  Tropane, piperidine and pyridine alkaloid biosynthesis
            gmx00965  Betalain biosynthesis
            gmx00966  Glucosinolate biosynthesis
            gmx00999  Biosynthesis of various plant secondary metabolites
            gmx01040  Biosynthesis of unsaturated fatty acids
KO_PATHWAY  ko01100
///
