ENTRY       gmx00630                    Pathway
NAME        Glyoxylate and dicarboxylate metabolism - Glycine max (soybean)
CLASS       Metabolism; Carbohydrate metabolism
PATHWAY_MAP gmx00630  Glyoxylate and dicarboxylate metabolism
MODULE      gmx_M00012  Glyoxylate cycle [PATH:gmx00630]
            gmx_M00532  Photorespiration [PATH:gmx00630]
DBLINKS     GO: 0046487 0043648
ORGANISM    Glycine max (soybean) [GN:gmx]
GENE        100789036  ICL1; isocitrate lyase 1 [KO:K01637] [EC:4.1.3.1]
            100782793  ICL; isocitrate lyase 2 [KO:K01637] [EC:4.1.3.1]
            100808939  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
            100789257  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
            100811706  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            100777882  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            100808187  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
            732628  MS; malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
            100782820  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
            100813906  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
            100783188  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
            100811402  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
            547963  cytosolic malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
            100777296  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
            100799793  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
            100170735  peroxisomal malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
            606509  MDH-1; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
            732641  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
            100783173  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
            100814078  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
            100814425  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
            106797956  malate dehydrogenase 1, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
            100784332  citrate synthase, glyoxysomal isoform X1 [KO:K01647] [EC:2.3.3.1]
            100499624  citrate synthase [KO:K01647] [EC:2.3.3.1]
            100781418  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
            100775180  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
            100170739  peroxisomal citrate synthase [KO:K01647] [EC:2.3.3.1]
            100805556  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
            100499625  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
            100793264  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            100811955  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
            100778506  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
            100794803  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            100810088  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
            100804647  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            100500596  probable acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
            100780213  probable acetyl-CoA acetyltransferase, cytosolic 2 isoform X2 [KO:K00626] [EC:2.3.1.9]
            100776777  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
            102666369  L-lactate dehydrogenase [KO:K11517] [EC:1.1.3.15]
            100777153  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
            100170730  peroxisomal glycolate oxidase [KO:K11517] [EC:1.1.3.15]
            100782977  uncharacterized protein LOC100782977 [KO:K11517] [EC:1.1.3.15]
            100800520  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
            102670034  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
            100170736  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
            100798419  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
            100798937  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
            121173714  peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like [KO:K11517] [EC:1.1.3.15]
            121172669  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
            100037447  CAT3; catalase-3 [KO:K03781] [EC:1.11.1.6]
            547510  CAT1; catalase-1/2 [KO:K03781] [EC:1.11.1.6]
            547511  CAT4; catalase-4 [KO:K03781] [EC:1.11.1.6]
            100037448  CAT5; catalase [KO:K03781] [EC:1.11.1.6]
            100776772  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
            100781928  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            100802847  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            100817216  uncharacterized protein LOC100817216 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
            547640  putative NADH-dependent hydroxypyruvate reductase [KO:K15893] [EC:1.1.1.29]
            548099  P42-1; conversion of hydroxypyruvate to glycerate [KO:K15893] [EC:1.1.1.29]
            100798113  phosphoglycolate phosphatase 1A, chloroplastic isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            100305976  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            100820476  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
            3989271  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
            547605  ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 [KO:K01602] [EC:4.1.1.39]
            100527679  putative ribulose bisphosphate carboxylase small chain [KO:K01602] [EC:4.1.1.39]
            100794277  ribulose bisphosphate carboxylase small chain 4, chloroplastic [KO:K01602] [EC:4.1.1.39]
            100500504  RBCS-1; ribulose bisphosphate carboxylase small chain 1, chloroplastic [KO:K01602] [EC:4.1.1.39]
            732565  serine glyoxylate aminotransferase 3 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
            100786630  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
            100127414  ALAAT2; alanine aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
            100787173  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
            548016  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
            100809299  ferredoxin-dependent glutamate synthase, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
            548036  GS-2; glutamine synthetase precursor [KO:K01915] [EC:6.3.1.2]
            547621  GS1GAMMA2; glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
            547798  GS1-GAMMA; glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
            100817922  glutamine synthetase PR-2 [KO:K01915] [EC:6.3.1.2]
            547953  GS; glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
            548082  GS; glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
            547620  GS1alpha; cytosolic glutamine synthetase alpha [KO:K01915] [EC:6.3.1.2]
            100780873  glutamine synthetase leaf isozyme, chloroplastic isoform X1 [KO:K01915] [EC:6.3.1.2]
            100794457  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
            100305381  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
            100305380  SHMT; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
            100816213  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
            100499635  serine hydroxymethyltransferase 5 [KO:K00600] [EC:2.1.2.1]
            100776419  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
            100793208  LOW QUALITY PROTEIN: serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
            100799472  serine hydroxymethyltransferase 7 isoform X1 [KO:K00600] [EC:2.1.2.1]
            100815417  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
            100499634  serine hydroxymethyltransferase 3 [KO:K00600] [EC:2.1.2.1]
            100779843  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
            100810926  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
            100812952  serine hydroxymethyltransferase, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
            100795673  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
            100814366  glycine dehydrogenase (decarboxylating), mitochondrial isoform X1 [KO:K00281] [EC:1.4.4.2]
            100819714  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
            100777528  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
            100778188  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
            100800509  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
            100809241  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
            547523  ferric leghemoglobin reductase-2 precursor [KO:K00382] [EC:1.8.1.4]
            100782004  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
            100803176  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
            100788043  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
            100809578  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
            100776304  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
            100306654  uncharacterized protein LOC100306654 [KO:K02437]
            100305815  glycine cleavage system H protein 2-like [KO:K02437]
            100785811  glycine cleavage system H protein, mitochondrial [KO:K02437]
            100792708  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
            100796561  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
            100806896  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
            100820573  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
            100796009  formate dehydrogenase 1, mitochondrial [KO:K00122] [EC:1.17.1.9]
            100797606  uncharacterized protein LOC100797606 [KO:K00122] [EC:1.17.1.9]
            100794313  uncharacterized protein LOC100794313 [KO:K00122] [EC:1.17.1.9]
            100791905  formyltetrahydrofolate deformylase 1, mitochondrial isoform X2 [KO:K01433] [EC:3.5.1.10]
            100780134  uncharacterized protein LOC100780134 [KO:K01433] [EC:3.5.1.10]
            100780793  LOW QUALITY PROTEIN: formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
            100809779  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
            100527923  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
            100783685  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
            100817853  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
            100779306  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
COMPOUND    C00007  Oxygen
            C00011  CO2
            C00014  Ammonia
            C00022  Pyruvate
            C00024  Acetyl-CoA
            C00025  L-Glutamate
            C00026  2-Oxoglutarate
            C00027  Hydrogen peroxide
            C00033  Acetate
            C00036  Oxaloacetate
            C00037  Glycine
            C00042  Succinate
            C00048  Glyoxylate
            C00058  Formate
            C00064  L-Glutamine
            C00065  L-Serine
            C00091  Succinyl-CoA
            C00100  Propanoyl-CoA
            C00111  Glycerone phosphate
            C00136  Butanoyl-CoA
            C00149  (S)-Malate
            C00158  Citrate
            C00160  Glycolate
            C00168  Hydroxypyruvate
            C00197  3-Phospho-D-glycerate
            C00209  Oxalate
            C00258  D-Glycerate
            C00266  Glycolaldehyde
            C00311  Isocitrate
            C00313  Oxalyl-CoA
            C00332  Acetoacetyl-CoA
            C00417  cis-Aconitate
            C00552  meso-Tartaric acid
            C00631  2-Phospho-D-glycerate
            C00683  (S)-Methylmalonyl-CoA
            C00798  Formyl-CoA
            C00877  Crotonoyl-CoA
            C00888  Pentanoyl-CoA
            C00898  (R,R)-Tartaric acid
            C00975  Dihydroxyfumarate
            C00988  2-Phosphoglycolate
            C01127  4-Hydroxy-2-oxoglutarate
            C01146  2-Hydroxy-3-oxopropanoate
            C01182  D-Ribulose 1,5-bisphosphate
            C01213  (R)-Methylmalonyl-CoA
            C01380  Ethylene glycol
            C01732  Mesaconate
            C01989  3-Ethylmalate
            C01990  3-Oxalomalate
            C02123  3-Propylmalate
            C02405  Formyl phosphate
            C03217  2-Hydroxy-3-oxoadipate
            C03459  2-Hydroxy-3-oxosuccinate
            C03548  trans-2,3-Epoxysuccinate
            C03561  (R)-3-Hydroxybutanoyl-CoA
            C03618  L-threo-3-Methylaspartate
            C04348  L-Malyl-CoA
            C06027  L-erythro-3-Methylmalyl-CoA
            C06028  2-Methylfumaryl-CoA
            C06049  N-Formylderivatives
            C18026  (2S)-Ethylmalonyl-CoA
            C18324  (2S)-Methylsuccinyl-CoA
            C20238  (2R)-Ethylmalonyl-CoA
            C22337  D-Ribulose 1-phosphate
REFERENCE   PMID:10978349
  AUTHORS   Njau RK, Herndon CA, Hawes JW.
  TITLE     Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  JOURNAL   J Biol Chem 275:38780-6 (2000)
            DOI:10.1074/jbc.M007432200
REFERENCE   PMID:18065535
  AUTHORS   Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  TITLE     Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  JOURNAL   J Bacteriol 190:1366-74 (2008)
            DOI:10.1128/JB.01621-07
REFERENCE   PMID:18819910
  AUTHORS   Erb TJ, Retey J, Fuchs G, Alber BE
  TITLE     Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  JOURNAL   J Biol Chem 283:32283-93 (2008)
            DOI:10.1074/jbc.M805527200
REFERENCE   PMID:9596633
  AUTHORS   Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  TITLE     Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  JOURNAL   Plant Cell 10:741-52 (1998)
            DOI:10.1105/tpc.10.5.741
REFERENCE   PMID:16407450
  AUTHORS   Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  TITLE     Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  JOURNAL   Plant Physiol 140:444-56 (2006)
            DOI:10.1104/pp.105.071910
REFERENCE   PMID:21252347
  AUTHORS   Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  TITLE     A methylaspartate cycle in haloarchaea.
  JOURNAL   Science 331:334-7 (2011)
            DOI:10.1126/science.1196544
REFERENCE   PMID:11513957
  AUTHORS   Serrano JA, Bonete MJ
  TITLE     Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  JOURNAL   Biochim Biophys Acta 1520:154-62 (2001)
            DOI:10.1016/S0167-4781(01)00263-9
REL_PATHWAY gmx00010  Glycolysis / Gluconeogenesis
            gmx00020  Citrate cycle (TCA cycle)
            gmx00030  Pentose phosphate pathway
            gmx00053  Ascorbate and aldarate metabolism
            gmx00071  Fatty acid degradation
            gmx00230  Purine metabolism
            gmx00250  Alanine, aspartate and glutamate metabolism
            gmx00260  Glycine, serine and threonine metabolism
            gmx00620  Pyruvate metabolism
            gmx00710  Carbon fixation in photosynthetic organisms
            gmx00750  Vitamin B6 metabolism
            gmx00910  Nitrogen metabolism
KO_PATHWAY  ko00630
///
