ENTRY       gmx00240                    Pathway
NAME        Pyrimidine metabolism - Glycine max (soybean)
CLASS       Metabolism; Nucleotide metabolism
PATHWAY_MAP gmx00240  Pyrimidine metabolism
MODULE      gmx_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:gmx00240]
            gmx_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gmx00240]
            gmx_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gmx00240]
            gmx_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:gmx00240]
DBLINKS     GO: 0006220 0006213
ORGANISM    Glycine max (soybean) [GN:gmx]
GENE        100819867  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
            100797877  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
            100806168  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
            100788470  uncharacterized protein LOC100788470 [KO:K01956] [EC:6.3.5.5]
            100776931  carbamoyl-phosphate synthase small chain, chloroplastic isoform X1 [KO:K01956] [EC:6.3.5.5]
            100802354  aspartate carbamoyltransferase 1, chloroplastic isoform X2 [KO:K00609] [EC:2.1.3.2]
            100796746  aspartate carbamoyltransferase 2, chloroplastic isoform X2 [KO:K00609] [EC:2.1.3.2]
            100815285  uncharacterized protein LOC100815285 [KO:K00609] [EC:2.1.3.2]
            100787097  aspartate carbamoyltransferase 1, chloroplastic [KO:K00609] [EC:2.1.3.2]
            100815210  dihydroorotase, mitochondrial-like [KO:K01465] [EC:3.5.2.3]
            100804389  dihydroorotase, mitochondrial [KO:K01465] [EC:3.5.2.3]
            100800054  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
            100783159  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
            100807008  uridine 5'-monophosphate synthase-like [KO:K13421] [EC:2.4.2.10 4.1.1.23]
            100780481  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
            100500111  UMP-CMP kinase family protein [KO:K13800] [EC:2.7.4.14]
            100306603  UMP/CMP kinase family protein [KO:K13800] [EC:2.7.4.14]
            100806842  UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
            100777369  UMP-CMP kinase isoform X1 [KO:K13800] [EC:2.7.4.14]
            100800162  uridylate kinase [KO:K09903] [EC:2.7.4.22]
            100781745  uridylate kinase [KO:K09903] [EC:2.7.4.22]
            547870  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
            100527141  NDPk domain-containing protein [KO:K00940] [EC:2.7.4.6]
            100527475  uncharacterized protein LOC100527475 [KO:K00940] [EC:2.7.4.6]
            547709  nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
            100500478  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
            100811753  uncharacterized protein LOC100811753 [KO:K00940] [EC:2.7.4.6]
            100799934  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
            100786376  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
            100807287  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
            100780748  LOW QUALITY PROTEIN: probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
            102665764  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
            100806446  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
            100786073  apyrase 2 [KO:K14641] [EC:3.6.1.5]
            100804818  apyrase 1 [KO:K14641] [EC:3.6.1.5]
            100787491  apyrase 2 [KO:K14641] [EC:3.6.1.5]
            100784833  nucleoside-triphosphatase [KO:K14641] [EC:3.6.1.5]
            100781628  GS52; ecto-apyrase GS52 precursor [KO:K14641] [EC:3.6.1.5]
            100811625  apyrase 2 [KO:K14641] [EC:3.6.1.5]
            100789438  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
            100793652  uncharacterized protein LOC100793652 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
            100800630  venom phosphodiesterase 2 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
            100778080  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
            100788720  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
            100793465  CTP synthase isoform X2 [KO:K01937] [EC:6.3.4.2]
            100819563  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
            100805857  CTP synthase isoform X2 [KO:K01937] [EC:6.3.4.2]
            100816167  CTP synthase [KO:K01937] [EC:6.3.4.2]
            100799980  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
            100527893  uridine kinase-like protein [KO:K00876] [EC:2.7.1.48]
            100777904  uridine kinase-like protein 3 isoform X1 [KO:K00876] [EC:2.7.1.48]
            100780005  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
            100816209  uridine kinase-like protein 1, chloroplastic isoform X2 [KO:K00876] [EC:2.7.1.48]
            100798205  uridine kinase-like protein 3 isoform X2 [KO:K00876] [EC:2.7.1.48]
            100792258  uridine kinase-like protein 3 isoform X2 [KO:K00876] [EC:2.7.1.48]
            100811230  inorganic pyrophosphatase TTM1 isoform X2 [KO:K00876] [EC:2.7.1.48]
            100803453  uridine kinase-like protein 5 [KO:K00876] [EC:2.7.1.48]
            100786137  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
            100781286  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
            100803122  inorganic pyrophosphatase TTM1 [KO:K00876] [EC:2.7.1.48]
            100797542  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
            100808698  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            100814744  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            100776267  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            100779772  uncharacterized protein LOC100779772 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            100785738  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            100790833  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            100792340  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
            100787754  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
            100787563  uridine nucleosidase 1-like [KO:K01240] [EC:3.2.2.3]
            100818908  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
            100804545  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
            100797953  putative uracil phosphoribosyltransferase isoform 2 [KO:K00761] [EC:2.4.2.9]
            100797537  uracil phosphoribosyltransferase-like protein [KO:K00761] [EC:2.4.2.9]
            100795266  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
            100815584  7-methylguanosine phosphate-specific 5'-nucleotidase A [KO:K24242] [EC:3.1.3.91]
            100787103  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
            100780880  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
            100795350  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
            102659836  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
            100783628  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
            547948  ribonucleotide reductase large subunit B [KO:K10807] [EC:1.17.4.1]
            548020  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
            100791639  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
            547521  ribonucleotide reductase small subunit [KO:K10808] [EC:1.17.4.1]
            100779885  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
            100820622  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
            100790224  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
            100784040  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
            100500294  nucleoside triphosphate pyrophosphohydrolase-like [KO:K16904] [EC:3.6.1.12]
            100527076  uncharacterized protein LOC100527076 [KO:K16904] [EC:3.6.1.12]
            100306684  uncharacterized protein LOC100306684 [KO:K16904] [EC:3.6.1.12]
            100500214  uncharacterized protein LOC100500214 [KO:K16904] [EC:3.6.1.12]
            106798062  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
            100789619  5'-deoxynucleotidase hdd1 [KO:K07023] [EC:3.1.3.89]
            100784513  5'-deoxynucleotidase hdd1 isoform X1 [KO:K07023] [EC:3.1.3.89]
            100798792  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
            100819398  5'-deoxynucleotidase HDDC2 isoform X2 [KO:K07023] [EC:3.1.3.89]
            100792003  deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
            100778161  thymidylate kinase-like protein [KO:K00943] [EC:2.7.4.9]
            100794055  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
            100782126  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
            100813201  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
            100818437  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
            100809756  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
            100781341  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
            547833  DHFR-TS; bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
            100786311  bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
            100786329  bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
            100788658  bifunctional dihydrofolate reductase-thymidylate synthase isoform X2 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
            100818990  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
            100804632  uncharacterized protein LOC100804632 [KO:K00207] [EC:1.3.1.2]
            100802353  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
            100781590  uncharacterized protein LOC100781590 precursor [KO:K01464] [EC:3.5.2.2]
            100797867  dihydropyrimidinase isoform X2 [KO:K01464] [EC:3.5.2.2]
            100792563  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
COMPOUND    C00015  UDP
            C00039  DNA
            C00046  RNA
            C00055  CMP
            C00063  CTP
            C00064  L-Glutamine
            C00075  UTP
            C00086  Urea
            C00099  beta-Alanine
            C00105  UMP
            C00106  Uracil
            C00112  CDP
            C00119  5-Phospho-alpha-D-ribose 1-diphosphate
            C00169  Carbamoyl phosphate
            C00178  Thymine
            C00214  Thymidine
            C00222  3-Oxopropanoate
            C00239  dCMP
            C00295  Orotate
            C00299  Uridine
            C00337  (S)-Dihydroorotate
            C00363  dTDP
            C00364  dTMP
            C00365  dUMP
            C00380  Cytosine
            C00383  Malonate
            C00429  5,6-Dihydrouracil
            C00438  N-Carbamoyl-L-aspartate
            C00458  dCTP
            C00459  dTTP
            C00460  dUTP
            C00475  Cytidine
            C00526  Deoxyuridine
            C00672  2-Deoxy-D-ribose 1-phosphate
            C00705  dCDP
            C00813  Barbiturate
            C00881  Deoxycytidine
            C01013  3-Hydroxypropanoate
            C01103  Orotidine 5'-phosphate
            C01168  Pseudouridine 5'-phosphate
            C01205  (R)-3-Amino-2-methylpropanoate
            C01346  dUDP
            C01368  3'-UMP
            C01563  Carbamate
            C02067  Pseudouridine
            C02170  Methylmalonate
            C02354  2',3'-Cyclic CMP
            C02355  2',3'-Cyclic UMP
            C02376  5-Methylcytosine
            C02642  3-Ureidopropionate
            C03997  5-Hydroxymethyldeoxycytidylate
            C05281  5-Methylbarbiturate
            C05822  3'-CMP
            C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
            C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
            C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
            C15607  3-Oxo-3-ureidopropanoate
            C20231  (Z)-3-Ureidoacrylate peracid
            C20249  (Z)-3-Peroxyaminoacrylate
            C20253  Aminoacrylate
            C20254  Ureidoacrylate
            C20846  3-Oxo-3-ureidoisobutyrate
            C21028  (R)-5,6-Dihydrothymine
            C21029  (R)-3-Ureidoisobutyrate
REL_PATHWAY gmx00030  Pentose phosphate pathway
            gmx00220  Arginine biosynthesis
            gmx00250  Alanine, aspartate and glutamate metabolism
            gmx00280  Valine, leucine and isoleucine degradation
            gmx00410  beta-Alanine metabolism
KO_PATHWAY  ko00240
///
