ENTRY       gmx00195                    Pathway
NAME        Photosynthesis - Glycine max (soybean)
DESCRIPTION Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
CLASS       Metabolism; Energy metabolism
PATHWAY_MAP gmx00195  Photosynthesis
MODULE      gmx_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:gmx00195]
            gmx_M00161  Photosystem II [PATH:gmx00195]
            gmx_M00163  Photosystem I [PATH:gmx00195]
ORGANISM    Glycine max (soybean) [GN:gmx]
GENE        3989259  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
            3989323  psbB; photosystem II 47 kDa protein [KO:K02704]
            3989283  psbC; photosystem II 44 kDa protein [KO:K02705]
            3989284  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
            3989313  psbE; photosystem II protein V [KO:K02707]
            3989312  psbF; photosystem II protein VI [KO:K02708]
            3989326  psbH; photosystem II protein H [KO:K02709]
            3989302  psbI; photosystem II protein I [KO:K02710]
            3989310  psbJ; photosystem II protein J [KO:K02711]
            3989303  psbK; photosystem II protein K [KO:K02712]
            3989311  psbL; photosystem II protein L [KO:K02713]
            3989288  psbM; photosystem II protein M [KO:K02714]
            100820458  uncharacterized protein LOC100820458 [KO:K02716]
            100798485  uncharacterized protein LOC100798485 [KO:K02716]
            100811386  uncharacterized protein LOC100811386 [KO:K02716]
            100792252  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
            100784806  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
            100781848  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
            100789641  psbP-like protein 1, chloroplastic isoform X1 [KO:K02717]
            100813388  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
            100802315  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
            100305918  psbP-like protein 1, chloroplastic [KO:K02717]
            100814163  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
            100306034  uncharacterized LOC100306034 [KO:K08901]
            100807480  photosynthetic NDH subunit of lumenal location 2, chloroplastic [KO:K08901]
            100499794  uncharacterized protein LOC100499794 [KO:K08901]
            100783530  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
            100305752  photosystem II subunit R-like [KO:K03541]
            100499745  uncharacterized protein LOC100499745 [KO:K03541]
            100305885  uncharacterized protein LOC100305885 [KO:K03542]
            100779417  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
            100807355  photosystem II 22 kDa protein, chloroplastic [KO:K03542]
            3989324  psbT; photosystem II protein T [KO:K02718]
            100305788  uncharacterized protein LOC100305788 [KO:K02721]
            100306223  uncharacterized protein LOC100306223 [KO:K02721]
            100526966  uncharacterized protein LOC100526966 [KO:K02721]
            100499815  uncharacterized protein LOC100499815 [KO:K02721]
            100779397  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
            100814665  photosystem II core complex proteins psbY, chloroplastic [KO:K02723]
            3989281  psbZ; photosystem II protein Z [KO:K02724]
            100777979  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
            100787080  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
            100306491  photosystem II reaction center PSB28-like [KO:K08903]
            100780777  photosystem II reaction center PSB28 protein, chloroplastic [KO:K08903]
            3989266  psaA; photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689]
            3989267  psaB; photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690]
            3989360  psaC; photosystem I subunit VII [KO:K02691]
            100101915  PSAD; photosystem I subunit PsaD [KO:K02692]
            100800992  photosystem I reaction center subunit II, chloroplastic [KO:K02692]
            100526993  uncharacterized protein LOC100526993 [KO:K02693]
            100811078  uncharacterized protein LOC100811078 [KO:K02693]
            100499814  uncharacterized protein LOC100499814 [KO:K02693]
            100500098  uncharacterized protein LOC100500098 [KO:K02693]
            100807732  photosystem I reaction center subunit III, chloroplastic [KO:K02694]
            100305786  putative photosystem I subunit G [KO:K08905]
            100499718  photosystem I subunit V [KO:K08905]
            100499832  uncharacterized protein LOC100499832 [KO:K02695]
            100811201  uncharacterized protein LOC100811201 [KO:K02695]
            100776789  uncharacterized protein LOC100776789 [KO:K02695]
            100500540  uncharacterized protein LOC100500540 [KO:K02695]
            100806824  photosystem I reaction center subunit VI, chloroplastic [KO:K02695]
            3989307  psaI; photosystem I subunit VIII [KO:K02696]
            3989318  psaJ; photosystem I subunit IX [KO:K02697]
            100527056  putative photosystem I reaction center subunit psaK 247 [KO:K02698]
            100785563  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
            100527240  uncharacterized protein LOC100527240 [KO:K02699]
            100500317  uncharacterized protein LOC100500317 [KO:K02699]
            100499729  uncharacterized protein LOC100499729 [KO:K02701]
            100306036  uncharacterized protein LOC100306036 [KO:K02701]
            100809697  photosystem I subunit O [KO:K14332]
            100305746  putative photosystem I subunit O [KO:K14332]
            3989309  petA; cytochrome f [KO:K02634]
            3989327  petB; cytochrome b6 [KO:K02635]
            100127419  PETC; Rieske iron-sulphur protein precursor [KO:K02636] [EC:7.1.1.6]
            100799420  photosynthetic electron transfer C-like protein [KO:K02636] [EC:7.1.1.6]
            3989328  petD; cytochrome b6/f complex subunit IV [KO:K02637]
            3989315  petG; cytochrome b6/f complex subunit V [KO:K02640]
            3989289  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
            100499708  putative plastocyanin [KO:K02638]
            100306554  plastocyanin [KO:K02638]
            100785611  ferredoxin-3, chloroplastic-like [KO:K02639]
            100500583  uncharacterized protein LOC100500583 [KO:K02639]
            100499711  ferredoxin 3-like [KO:K02639]
            100500300  2Fe-2S ferredoxin-like superfamily protein [KO:K02639]
            100813636  ferredoxin-A [KO:K02639]
            100794941  ferredoxin C 1, chloroplastic [KO:K02639]
            100500372  2Fe-2S ferredoxin-like superfamily protein [KO:K02639]
            100791128  ferredoxin C 2, chloroplastic [KO:K02639]
            100808254  ferredoxin-A [KO:K02639]
            100305932  uncharacterized protein LOC100305932 [KO:K02639]
            100305886  putative ferredoxin [KO:K02639]
            100807723  ferredoxin-A [KO:K02639]
            100782906  ferredoxin C 2, chloroplastic [KO:K02639]
            100798467  ferredoxin--NADP reductase, leaf isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
            100807968  uncharacterized protein LOC100807968 [KO:K02641] [EC:1.18.1.2]
            100802032  ferredoxin--NADP reductase, leaf isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
            100793840  ferredoxin--NADP reductase, leaf isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
            100789291  uncharacterized protein LOC100789291 [KO:K02641] [EC:1.18.1.2]
            100500456  uncharacterized protein LOC100500456 [KO:K08906]
            100797820  cytochrome c6, chloroplastic isoform X4 [KO:K08906]
            3989273  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
            3989272  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
            100037480  ATPC; ATP synthase gamma chain, chloroplastic [KO:K02115]
            100797290  ATP synthase gamma chain, chloroplastic [KO:K02115]
            100797879  ATP synthase gamma chain, chloroplastic [KO:K02115]
            3989298  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
            100815063  ATP synthase delta chain, chloroplastic [KO:K02113]
            100819224  ATP synthase delta chain, chloroplastic [KO:K02113]
            100527009  putative ATP synthase subunit b' [KO:K02109]
            3989297  atpF; ATP synthase CF0 B subunit [KO:K02109]
            15308626  atp8; ATPase subunit 8 [KO:K02109]
            100817028  ATP synthase subunit b', chloroplastic [KO:K02109]
            3989296  atpH; ATP synthase CF0 C subunit [KO:K02110]
            3989295  atpI; ATP synthase CF0 A subunit [KO:K02108]
COMPOUND    C00001  H2O
            C00002  ATP
            C00005  NADPH
            C00006  NADP+
            C00007  Oxygen
            C00008  ADP
            C00009  Orthophosphate
            C00034  Manganese
            C00080  H+
            C02061  Plastoquinone
            C02185  Plastoquinol-1
REFERENCE   PMID:14764885
  AUTHORS   Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  TITLE     Architecture of the photosynthetic oxygen-evolving center.
  JOURNAL   Science 303:1831-8 (2004)
            DOI:10.1126/science.1093087
REFERENCE   PMID:12518057
  AUTHORS   Kamiya N, Shen JR.
  TITLE     Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  JOURNAL   Proc Natl Acad Sci U S A 100:98-103 (2003)
            DOI:10.1073/pnas.0135651100
REFERENCE   PMID:11217865
  AUTHORS   Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  TITLE     Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  JOURNAL   Nature 409:739-743 (2001)
            DOI:10.1038/35055589
REFERENCE   PMID:11418848
  AUTHORS   Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  TITLE     Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  JOURNAL   Nature 411:909-917 (2001)
            DOI:10.1038/35082000
REFERENCE   PMID:11369223
  AUTHORS   Jones MR, Fyfe PK.
  TITLE     Photosynthesis: new light on biological oxygen production.
  JOURNAL   Curr Biol 17:R318-R321 (2001)
            DOI:10.1016/S0960-9822(01)00174-9
REFERENCE   PMID:11914373
  AUTHORS   Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  TITLE     Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  JOURNAL   J Biol Chem 277:20343-54 (2002)
            DOI:10.1074/jbc.M201103200
REL_PATHWAY gmx00196  Photosynthesis - antenna proteins
            gmx00710  Carbon fixation in photosynthetic organisms
KO_PATHWAY  ko00195
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