ENTRY       gmx00030                    Pathway
NAME        Pentose phosphate pathway - Glycine max (soybean)
DESCRIPTION The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
CLASS       Metabolism; Carbohydrate metabolism
PATHWAY_MAP gmx00030  Pentose phosphate pathway
MODULE      gmx_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gmx00030]
            gmx_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:gmx00030]
            gmx_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gmx00030]
            gmx_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gmx00030]
DBLINKS     GO: 0006098
ORGANISM    Glycine max (soybean) [GN:gmx]
GENE        100807719  glucose-6-phosphate isomerase, cytosolic-like [KO:K01810] [EC:5.3.1.9]
            100791285  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
            100818441  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
            100809452  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
            100791496  LOW QUALITY PROTEIN: glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
            100814915  glucose-6-phosphate isomerase, cytosolic 2 [KO:K01810] [EC:5.3.1.9]
            100798134  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
            100793694  glucose-6-phosphate 1-dehydrogenase, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100817852  G6PDH; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100780018  glucose-6-phosphate 1-dehydrogenase, chloroplastic isoform X3 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100806107  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100811075  inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100793462  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100815891  glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100796541  inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100777353  glucose-6-phosphate 1-dehydrogenase 1, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100801945  glucose-6-phosphate 1-dehydrogenase, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
            100809411  putative 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
            100803687  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
            100804571  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
            100792737  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
            100794078  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
            100806593  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
            547455  GND; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
            100796103  6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
            100803740  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
            100818789  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
            100799034  6-phosphogluconate dehydrogenase, decarboxylating 2 isoform X2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
            100527490  putative ribulose phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
            100786514  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
            100817791  putative D-ribulose-5-phosphate-3-epimerase [KO:K01783] [EC:5.1.3.1]
            100500085  ribulose-phosphate 3-epimerase, cytoplasmic isoform isoform X1 [KO:K01783] [EC:5.1.3.1]
            100781676  transketolase, chloroplastic isoform X1 [KO:K00615] [EC:2.2.1.1]
            100818028  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
            100805786  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
            100807267  transaldolase [KO:K00616] [EC:2.2.1.2]
            100789900  transaldolase [KO:K00616] [EC:2.2.1.2]
            100800377  uncharacterized protein LOC100800377 [KO:K00616] [EC:2.2.1.2]
            100813545  transaldolase [KO:K00616] [EC:2.2.1.2]
            100811673  transaldolase [KO:K00616] [EC:2.2.1.2]
            100816075  transaldolase [KO:K00616] [EC:2.2.1.2]
            100806367  transaldolase [KO:K00616] [EC:2.2.1.2]
            100792138  transaldolase [KO:K00616] [EC:2.2.1.2]
            100792666  probable ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
            100790894  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
            100795150  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
            100783936  probable ribose-5-phosphate isomerase 4, chloroplastic [KO:K01807] [EC:5.3.1.6]
            100781866  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
            100787958  ribokinase [KO:K00852] [EC:2.7.1.15]
            100801418  ribokinase [KO:K00852] [EC:2.7.1.15]
            102666284  ribokinase [KO:K00852] [EC:2.7.1.15]
            100780166  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
            100802730  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
            100778321  phosphoglucomutase, chloroplastic isoform X1 [KO:K01835] [EC:5.4.2.2]
            100802789  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
            100816430  ribose-phosphate pyrophosphokinase 1 isoform X2 [KO:K00948] [EC:2.7.6.1]
            100789585  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
            100794730  ribose-phosphate pyrophosphokinase 1 isoform X2 [KO:K00948] [EC:2.7.6.1]
            100807743  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
            100789100  ALDH11A2; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
            100780041  ALDH11A1; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
            100789108  ALDH11A3; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
            100820082  gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
            100775407  gluconokinase [KO:K00851] [EC:2.7.1.12]
            100527532  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
            100778363  fructose-bisphosphate aldolase, cytoplasmic isozyme-like [KO:K01623] [EC:4.1.2.13]
            100786504  putative fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
            100818383  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
            100818915  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
            100798677  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
            100795446  uncharacterized protein LOC100795446 [KO:K01623] [EC:4.1.2.13]
            100775844  putative fructose-bisphosphate aldolase 2 [KO:K01623] [EC:4.1.2.13]
            100802732  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
            547751  FBA; fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
            100792394  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [KO:K01623] [EC:4.1.2.13]
            100815070  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
            100783089  putative fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
            100815943  fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
            100793620  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
            100812684  uncharacterized protein LOC100812684 [KO:K03841] [EC:3.1.3.11]
            100787135  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
            100797157  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
            547809  FBP; fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
            100807451  fructose-1,6-bisphosphatase, cytosolic isoform X1 [KO:K03841] [EC:3.1.3.11]
            100799873  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
            100820495  ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 [KO:K00850] [EC:2.7.1.11]
            100794539  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
            100803139  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
            100818755  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
            100795344  ATP-dependent 6-phosphofructokinase 7 [KO:K00850] [EC:2.7.1.11]
            100798766  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
            100780164  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
            100793844  ATP-dependent 6-phosphofructokinase 3 isoform X1 [KO:K00850] [EC:2.7.1.11]
            100815278  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
            100776597  ATP-dependent 6-phosphofructokinase 3 isoform X1 [KO:K00850] [EC:2.7.1.11]
            100796769  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
            100782166  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
            100796614  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
            100807957  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
            100793883  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
            100800863  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
            100819847  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
            100782857  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
            100797925  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta isoform X2 [KO:K00895] [EC:2.7.1.90]
            100804429  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
COMPOUND    C00022  Pyruvate
            C00031  D-Glucose
            C00117  D-Ribose 5-phosphate
            C00118  D-Glyceraldehyde 3-phosphate
            C00119  5-Phospho-alpha-D-ribose 1-diphosphate
            C00121  D-Ribose
            C00197  3-Phospho-D-glycerate
            C00198  D-Glucono-1,5-lactone
            C00199  D-Ribulose 5-phosphate
            C00204  2-Dehydro-3-deoxy-D-gluconate
            C00221  beta-D-Glucose
            C00231  D-Xylulose 5-phosphate
            C00257  D-Gluconic acid
            C00258  D-Glycerate
            C00279  D-Erythrose 4-phosphate
            C00345  6-Phospho-D-gluconate
            C00577  D-Glyceraldehyde
            C00620  alpha-D-Ribose 1-phosphate
            C00631  2-Phospho-D-glycerate
            C00668  alpha-D-Glucose 6-phosphate
            C00672  2-Deoxy-D-ribose 1-phosphate
            C00673  2-Deoxy-D-ribose 5-phosphate
            C01151  D-Ribose 1,5-bisphosphate
            C01172  beta-D-Glucose 6-phosphate
            C01182  D-Ribulose 1,5-bisphosphate
            C01218  6-Phospho-2-dehydro-D-gluconate
            C01236  D-Glucono-1,5-lactone 6-phosphate
            C01801  Deoxyribose
            C03752  2-Amino-2-deoxy-D-gluconate
            C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
            C05345  beta-D-Fructose 6-phosphate
            C05378  beta-D-Fructose 1,6-bisphosphate
            C05382  Sedoheptulose 7-phosphate
            C06019  D-arabino-Hex-3-ulose 6-phosphate
            C06473  2-Keto-D-gluconic acid
            C20589  D-Glucosaminate-6-phosphate
REFERENCE   
  AUTHORS   Nishizuka Y (ed).
  TITLE     [Metabolic Maps] (In Japanese)
  JOURNAL   Tokyo Kagaku Dojin (1980)
REFERENCE   
  AUTHORS   Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  TITLE     [Cellular Functions and Metabolic Maps] (In Japanese)
  JOURNAL   Tokyo Kagaku Dojin (1997)
REFERENCE   
  AUTHORS   Michal G.
  TITLE     Biochemical Pathways
  JOURNAL   Wiley (1999)
REFERENCE   PMID:12700258
  AUTHORS   Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  TITLE     Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  JOURNAL   J Bacteriol 185:2793-801 (2003)
            DOI:10.1128/JB.185.9.2793-2801.2003
REFERENCE   PMID:16788179
  AUTHORS   Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  TITLE     The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  JOURNAL   J Bacteriol 188:4698-704 (2006)
            DOI:10.1128/JB.00492-06
REFERENCE   PMID:16428816
  AUTHORS   Kato N, Yurimoto H, Thauer RK
  TITLE     The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  JOURNAL   Biosci Biotechnol Biochem 70:10-21 (2006)
            DOI:10.1271/bbb.70.10
REFERENCE   PMID:23279921
  AUTHORS   Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  TITLE     Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  JOURNAL   FEBS J 280:1126-38 (2013)
            DOI:10.1111/febs.12106
REFERENCE   PMID:16458304
  AUTHORS   Reher M, Schonheit P
  TITLE     Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  JOURNAL   FEBS Lett 580:1198-204 (2006)
            DOI:10.1016/j.febslet.2006.01.029
REFERENCE   PMID:20023024
  AUTHORS   Reher M, Fuhrer T, Bott M, Schonheit P
  TITLE     The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  JOURNAL   J Bacteriol 192:964-74 (2010)
            DOI:10.1128/JB.01281-09
REL_PATHWAY gmx00010  Glycolysis / Gluconeogenesis
            gmx00040  Pentose and glucuronate interconversions
            gmx00052  Galactose metabolism
            gmx00230  Purine metabolism
            gmx00240  Pyrimidine metabolism
            gmx00340  Histidine metabolism
            gmx00630  Glyoxylate and dicarboxylate metabolism
            gmx00750  Vitamin B6 metabolism
KO_PATHWAY  ko00030
///
