ENTRY       ath01100                    Pathway
NAME        Metabolic pathways - Arabidopsis thaliana (thale cress)
PATHWAY_MAP ath01100  Metabolic pathways
MODULE      ath_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ath01100]
            ath_M00002  Glycolysis, core module involving three-carbon compounds [PATH:ath01100]
            ath_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ath01100]
            ath_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ath01100]
            ath_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ath01100]
            ath_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ath01100]
            ath_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ath01100]
            ath_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ath01100]
            ath_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ath01100]
            ath_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ath01100]
            ath_M00012  Glyoxylate cycle [PATH:ath01100]
            ath_M00015  Proline biosynthesis, glutamate => proline [PATH:ath01100]
            ath_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ath01100]
            ath_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:ath01100]
            ath_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:ath01100]
            ath_M00021  Cysteine biosynthesis, serine => cysteine [PATH:ath01100]
            ath_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:ath01100]
            ath_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:ath01100]
            ath_M00026  Histidine biosynthesis, PRPP => histidine [PATH:ath01100]
            ath_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:ath01100]
            ath_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:ath01100]
            ath_M00034  Methionine salvage pathway [PATH:ath01100]
            ath_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:ath01100]
            ath_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:ath01100]
            ath_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:ath01100]
            ath_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:ath01100]
            ath_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:ath01100]
            ath_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:ath01100]
            ath_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:ath01100]
            ath_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:ath01100]
            ath_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ath01100]
            ath_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ath01100]
            ath_M00055  N-glycan precursor biosynthesis [PATH:ath01100]
            ath_M00072  N-glycosylation by oligosaccharyltransferase [PATH:ath01100]
            ath_M00073  N-glycan precursor trimming [PATH:ath01100]
            ath_M00081  Pectin degradation [PATH:ath01100]
            ath_M00082  Fatty acid biosynthesis, initiation [PATH:ath01100]
            ath_M00083  Fatty acid biosynthesis, elongation [PATH:ath01100]
            ath_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:ath01100]
            ath_M00087  beta-Oxidation [PATH:ath01100]
            ath_M00089  Triacylglycerol biosynthesis [PATH:ath01100]
            ath_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:ath01100]
            ath_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:ath01100]
            ath_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:ath01100]
            ath_M00097  beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:ath01100]
            ath_M00098  Acylglycerol degradation [PATH:ath01100]
            ath_M00100  Sphingosine degradation [PATH:ath01100]
            ath_M00112  Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:ath01100]
            ath_M00113  Jasmonic acid biosynthesis [PATH:ath01100]
            ath_M00114  Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:ath01100]
            ath_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:ath01100]
            ath_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:ath01100]
            ath_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:ath01100]
            ath_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:ath01100]
            ath_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:ath01100]
            ath_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:ath01100]
            ath_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:ath01100]
            ath_M00132  Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:ath01100]
            ath_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:ath01100]
            ath_M00138  Flavonoid biosynthesis, naringenin => pelargonidin [PATH:ath01100]
            ath_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:ath01100]
            ath_M00166  Reductive pentose phosphate cycle, ribulose-5P => glyceraldehyde-3P [PATH:ath01100]
            ath_M00167  Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P [PATH:ath01100]
            ath_M00168  CAM (Crassulacean acid metabolism), dark [PATH:ath01100]
            ath_M00169  CAM (Crassulacean acid metabolism), light [PATH:ath01100]
            ath_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:ath01100]
            ath_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:ath01100]
            ath_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:ath01100]
            ath_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ath01100]
            ath_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:ath01100]
            ath_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:ath01100]
            ath_M00370  Glucosinolate biosynthesis, tryptophan => glucobrassicin [PATH:ath01100]
            ath_M00372  Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:ath01100]
            ath_M00415  Fatty acid elongation in endoplasmic reticulum [PATH:ath01100]
            ath_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:ath01100]
            ath_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:ath01100]
            ath_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:ath01100]
            ath_M00532  Photorespiration [PATH:ath01100]
            ath_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:ath01100]
            ath_M00555  Betaine biosynthesis, choline => betaine [PATH:ath01100]
            ath_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:ath01100]
            ath_M00844  Arginine biosynthesis, ornithine => arginine [PATH:ath01100]
            ath_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:ath01100]
            ath_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:ath01100]
            ath_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:ath01100]
            ath_M00882  Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:ath01100]
            ath_M00892  UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:ath01100]
            ath_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:ath01100]
            ath_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:ath01100]
            ath_M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:ath01100]
            ath_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:ath01100]
            ath_M00917  Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:ath01100]
            ath_M00927  Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:ath01100]
            ath_M00928  Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:ath01100]
            ath_M00932  Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:ath01100]
            ath_M00933  Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:ath01100]
            ath_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:ath01100]
ORGANISM    Arabidopsis thaliana (thale cress) [GN:ath]
REL_PATHWAY ath00010  Glycolysis / Gluconeogenesis
            ath00020  Citrate cycle (TCA cycle)
            ath00030  Pentose phosphate pathway
            ath00040  Pentose and glucuronate interconversions
            ath00051  Fructose and mannose metabolism
            ath00052  Galactose metabolism
            ath00053  Ascorbate and aldarate metabolism
            ath00061  Fatty acid biosynthesis
            ath00062  Fatty acid elongation
            ath00071  Fatty acid degradation
            ath00073  Cutin, suberine and wax biosynthesis
            ath00100  Steroid biosynthesis
            ath00130  Ubiquinone and other terpenoid-quinone biosynthesis
            ath00190  Oxidative phosphorylation
            ath00195  Photosynthesis
            ath00196  Photosynthesis - antenna proteins
            ath00220  Arginine biosynthesis
            ath00230  Purine metabolism
            ath00232  Caffeine metabolism
            ath00240  Pyrimidine metabolism
            ath00250  Alanine, aspartate and glutamate metabolism
            ath00260  Glycine, serine and threonine metabolism
            ath00261  Monobactam biosynthesis
            ath00270  Cysteine and methionine metabolism
            ath00280  Valine, leucine and isoleucine degradation
            ath00290  Valine, leucine and isoleucine biosynthesis
            ath00300  Lysine biosynthesis
            ath00310  Lysine degradation
            ath00330  Arginine and proline metabolism
            ath00340  Histidine metabolism
            ath00350  Tyrosine metabolism
            ath00360  Phenylalanine metabolism
            ath00380  Tryptophan metabolism
            ath00400  Phenylalanine, tyrosine and tryptophan biosynthesis
            ath00410  beta-Alanine metabolism
            ath00430  Taurine and hypotaurine metabolism
            ath00440  Phosphonate and phosphinate metabolism
            ath00450  Selenocompound metabolism
            ath00460  Cyanoamino acid metabolism
            ath00470  D-Amino acid metabolism
            ath00480  Glutathione metabolism
            ath00500  Starch and sucrose metabolism
            ath00510  N-Glycan biosynthesis
            ath00511  Other glycan degradation
            ath00513  Various types of N-glycan biosynthesis
            ath00514  Other types of O-glycan biosynthesis
            ath00520  Amino sugar and nucleotide sugar metabolism
            ath00531  Glycosaminoglycan degradation
            ath00543  Exopolysaccharide biosynthesis
            ath00561  Glycerolipid metabolism
            ath00562  Inositol phosphate metabolism
            ath00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
            ath00564  Glycerophospholipid metabolism
            ath00565  Ether lipid metabolism
            ath00590  Arachidonic acid metabolism
            ath00591  Linoleic acid metabolism
            ath00592  alpha-Linolenic acid metabolism
            ath00600  Sphingolipid metabolism
            ath00601  Glycosphingolipid biosynthesis - lacto and neolacto series
            ath00603  Glycosphingolipid biosynthesis - globo and isoglobo series
            ath00604  Glycosphingolipid biosynthesis - ganglio series
            ath00620  Pyruvate metabolism
            ath00630  Glyoxylate and dicarboxylate metabolism
            ath00640  Propanoate metabolism
            ath00650  Butanoate metabolism
            ath00660  C5-Branched dibasic acid metabolism
            ath00670  One carbon pool by folate
            ath00710  Carbon fixation in photosynthetic organisms
            ath00730  Thiamine metabolism
            ath00740  Riboflavin metabolism
            ath00750  Vitamin B6 metabolism
            ath00760  Nicotinate and nicotinamide metabolism
            ath00770  Pantothenate and CoA biosynthesis
            ath00780  Biotin metabolism
            ath00785  Lipoic acid metabolism
            ath00790  Folate biosynthesis
            ath00860  Porphyrin metabolism
            ath00900  Terpenoid backbone biosynthesis
            ath00901  Indole alkaloid biosynthesis
            ath00902  Monoterpenoid biosynthesis
            ath00903  Limonene and pinene degradation
            ath00904  Diterpenoid biosynthesis
            ath00905  Brassinosteroid biosynthesis
            ath00906  Carotenoid biosynthesis
            ath00908  Zeatin biosynthesis
            ath00909  Sesquiterpenoid and triterpenoid biosynthesis
            ath00910  Nitrogen metabolism
            ath00920  Sulfur metabolism
            ath00940  Phenylpropanoid biosynthesis
            ath00941  Flavonoid biosynthesis
            ath00942  Anthocyanin biosynthesis
            ath00944  Flavone and flavonol biosynthesis
            ath00950  Isoquinoline alkaloid biosynthesis
            ath00960  Tropane, piperidine and pyridine alkaloid biosynthesis
            ath00965  Betalain biosynthesis
            ath00966  Glucosinolate biosynthesis
            ath00999  Biosynthesis of various plant secondary metabolites
            ath01040  Biosynthesis of unsaturated fatty acids
KO_PATHWAY  ko01100
///
