plot one tree with study title and geochronological axis
plot_phylo( tree, title = "Tree", time_depth = NULL, axis_type = 1, cex = graphics::par("cex"), mai4 = NULL, write = "nothing", file_name = NULL, GTS = getAnywhere("strat2012") )
| tree | A tree either as a newick character string or as a phylo object |
|---|---|
| title | A character string giving the name and path to write the files to. |
| time_depth | A numeric vector indicating the upper limit on the time x axis scale. |
| axis_type | A numeric vector indicating the type of geochronological axis to plot. See examples. |
| cex | a numeric value giving the factor scaling of the tip and node labels (Character EXpansion). The default is to take the current value from the graphical parameters. |
| mai4 | A numeric vector of length one indicating the space needed for plotting whole tip labels (right margin of the plot). |
| write | A character vector of length 1. Use pdf or png to write a file on those formats respectively. Anything else will not write any image file. |
| file_name | A character string giving the name and path to write the files to. |
| GTS | A dataframe of geochronological limits. |