plot one tree with study title and geochronological axis

plot_phylo(
  tree,
  title = "Tree",
  time_depth = NULL,
  axis_type = 1,
  cex = graphics::par("cex"),
  mai4 = NULL,
  write = "nothing",
  file_name = NULL,
  GTS = getAnywhere("strat2012")
)

Arguments

tree

A tree either as a newick character string or as a phylo object

title

A character string giving the name and path to write the files to.

time_depth

A numeric vector indicating the upper limit on the time x axis scale.

axis_type

A numeric vector indicating the type of geochronological axis to plot. See examples.

cex

a numeric value giving the factor scaling of the tip and node labels (Character EXpansion). The default is to take the current value from the graphical parameters.

mai4

A numeric vector of length one indicating the space needed for plotting whole tip labels (right margin of the plot).

write

A character vector of length 1. Use pdf or png to write a file on those formats respectively. Anything else will not write any image file.

file_name

A character string giving the name and path to write the files to.

GTS

A dataframe of geochronological limits.