Lineage through time plots of all chronograms in multiphylo object and its summaries.

plot_ltt_summary(
  taxon,
  phy,
  phy_sdm,
  phy_median,
  file_name = NULL,
  file_dir = NULL,
  height = 3.5,
  width = 7,
  add_legend = TRUE,
  add_title = FALSE,
  col_sdm = "#00AFBB",
  col_median = "#CC79A7",
  tax_datedotol = NULL,
  ...
)

Arguments

taxon	Character vector indicating the name of the taxon or lineage that the chronograms in phy belong to.
phy	A phylo or multiphylo object with chronograms (trees with branch lengths proportional to geologic time), ideally.
phy_sdm	A multiphylo object with chronograms from a SDM summary.
phy_median	A multiphylo object with chronograms from a median summary.
file_name	A character string giving the name of the pdf file.
file_dir	A character string giving the path to write the file to.
height	Height of the plot
width	Width of the plot
add_legend	Boolean
add_title	Boolean
col_sdm	Color of the SDM tree
col_median	Color of the median tree
tax_datedotol	A chronogram to compare other chronograms to.
...	Arguments passed on to `ape::ltt.plot` `xlab` a character string (or a variable of mode character) giving the label for the \(x\)-axis (default is "Time"). `ylab` idem for the \(y\)-axis (default is "N"). `backward` a logical value: should the time axis be traced from the present (the default), or from the root of the tree? `tol` a numeric value (see details).