Check for conflicting calibrations.

check_conflicting_calibrations checks if calibrations are younger or older relative to descendants and ancestors, respectively.

Usage

check_conflicting_calibrations(phy, calibration_distribution)

Arguments

phy

A phylo object.

calibration_distribution

A list of node age distributions, named with phy's node numbers.

Details

It removes conflicting calibrations if needed, but BLADJ works as long as it has an age for the root.