webatlas-pipeline
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webatlas-pipeline
Index
Index
B
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C
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G
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H
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I
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M
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O
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P
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S
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T
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V
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W
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X
B
batch_process_array() (in module process_h5ad)
batch_process_sparse() (in module process_h5ad)
build_config
module
build_options() (in module build_config)
build_raster_options() (in module build_config)
C
consolidate() (in module consolidate_md)
consolidate_md
module
constants
module
G
get_metadata() (in module ome_zarr_metadata)
H
h5ad_to_zarr() (in module process_h5ad)
I
integrate_image
module
M
module
build_config
consolidate_md
constants
integrate_image
ome_zarr_metadata
process_h5ad
process_molecules
process_spaceranger
process_xenium
O
ome_zarr_metadata
module
P
preprocess_anndata() (in module process_h5ad)
process_h5ad
module
process_molecules
module
process_spaceranger
module
process_xenium
module
S
spaceranger_to_anndata() (in module process_spaceranger)
spaceranger_to_zarr() (in module process_spaceranger)
T
tsv_to_json() (in module process_molecules)
V
visium_label() (in module process_spaceranger)
W
write_json() (in module build_config)
X
xenium_label() (in module process_xenium)
xenium_to_anndata() (in module process_xenium)
xenium_to_zarr() (in module process_xenium)