Python + R: gds
The gds
flavour contains a full gds_py
stack, as well as an entire R stack. This includes the following:
- An R stack composed of a list of libraries designed to closely mirror that provided by the excellent
rocker/geospatial
project. - An R kernel for Jupyter Lab/Notebook, provided by the
IRkernel
project. - An interface to R from Python Jupyter notebooks, provided by
rpy2
project.
R Libraries
A full list of Python libraries installed in the gds_py
environment is available below:
`gds`
R library list (click to expand)
Package | Version | Priority | |
---|---|---|---|
abind | abind | 1.4-5 | NA |
areal | areal | 0.1.7 | NA |
arm | arm | 1.12-2 | NA |
arrow | arrow | 8.0.0.20220522 | NA |
askpass | askpass | 1.1 | NA |
assertthat | assertthat | 0.2.1 | NA |
backports | backports | 1.4.1 | NA |
base64enc | base64enc | 0.1-3 | NA |
bayesplot | bayesplot | 1.9.0 | NA |
bayestestR | bayestestR | 0.12.1 | NA |
BH | BH | 1.78.0-0 | NA |
BiocManager | BiocManager | 1.30.18 | NA |
BiocVersion | BiocVersion | 3.15.2 | NA |
bit | bit | 4.0.4 | NA |
bit64 | bit64 | 4.0.5 | NA |
bitops | bitops | 1.0-7 | NA |
blme | blme | 1.0-5 | NA |
blob | blob | 1.2.3 | NA |
bookdown | bookdown | 0.26 | NA |
brew | brew | 1.0-7 | NA |
bridgesampling | bridgesampling | 1.1-2 | NA |
brio | brio | 1.1.3 | NA |
brms | brms | 2.17.0 | NA |
Brobdingnag | Brobdingnag | 1.2-7 | NA |
broom | broom | 0.8.0 | NA |
broom.mixed | broom.mixed | 0.2.9.4 | NA |
bslib | bslib | 0.3.1 | NA |
cachem | cachem | 1.0.6 | NA |
callr | callr | 3.7.0 | NA |
car | car | 3.0-13 | NA |
carData | carData | 3.0-5 | NA |
cellranger | cellranger | 1.1.0 | NA |
checkmate | checkmate | 2.1.0 | NA |
classInt | classInt | 0.4-3 | NA |
cli | cli | 3.3.0 | NA |
clipr | clipr | 0.8.0 | NA |
cNORM | cNORM | 3.0.1 | NA |
coda | coda | 0.19-4 | NA |
colorspace | colorspace | 2.0-3 | NA |
colourpicker | colourpicker | 1.1.1 | NA |
commonmark | commonmark | 1.8.0 | NA |
corrplot | corrplot | 0.92 | NA |
cowplot | cowplot | 1.1.1 | NA |
cpp11 | cpp11 | 0.4.2 | NA |
crayon | crayon | 1.5.1 | NA |
credentials | credentials | 1.3.2 | NA |
crosstalk | crosstalk | 1.2.0 | NA |
crul | crul | 1.2.0 | NA |
curl | curl | 4.3.2 | NA |
data.table | data.table | 1.14.2 | NA |
datawizard | datawizard | 0.4.1 | NA |
DBI | DBI | 1.1.2 | NA |
dbplyr | dbplyr | 2.1.1 | NA |
deldir | deldir | 1.0-6 | NA |
desc | desc | 1.4.1 | NA |
devtools | devtools | 2.4.3 | NA |
dichromat | dichromat | 2.0-0.1 | NA |
diffobj | diffobj | 0.3.5 | NA |
digest | digest | 0.6.29 | NA |
distributional | distributional | 0.3.0 | NA |
dotCall64 | dotCall64 | 1.0-1 | NA |
dplyr | dplyr | 1.0.9 | NA |
DT | DT | 0.23 | NA |
dtplyr | dtplyr | 1.2.1 | NA |
dygraphs | dygraphs | 1.1.1.6 | NA |
e1071 | e1071 | 1.7-9 | NA |
effectsize | effectsize | 0.6.0.1 | NA |
ellipsis | ellipsis | 0.3.2 | NA |
emmeans | emmeans | 1.7.4-1 | NA |
estimability | estimability | 1.3 | NA |
evaluate | evaluate | 0.15 | NA |
expm | expm | 0.999-6 | NA |
fansi | fansi | 1.0.3 | NA |
farver | farver | 2.1.0 | NA |
fastmap | fastmap | 1.1.0 | NA |
feather | feather | 0.3.5 | NA |
FNN | FNN | 1.1.3.1 | NA |
fontawesome | fontawesome | 0.2.2 | NA |
forcats | forcats | 0.5.1 | NA |
foreach | foreach | 1.5.2 | NA |
Formula | Formula | 1.2-4 | NA |
FRK | FRK | 2.0.5 | NA |
fs | fs | 1.5.2 | NA |
fst | fst | 0.9.8 | NA |
fstcore | fstcore | 0.9.12 | NA |
furrr | furrr | 0.3.0 | NA |
future | future | 1.25.0 | NA |
gargle | gargle | 1.2.0 | NA |
gdata | gdata | 2.18.0.1 | NA |
generics | generics | 0.1.2 | NA |
geocompkg | geocompkg | 2.0.6 | NA |
geojson | geojson | 0.3.4 | NA |
geojsonio | geojsonio | 0.9.4 | NA |
geojsonsf | geojsonsf | 2.0.2 | NA |
geometries | geometries | 0.2.0 | NA |
geosphere | geosphere | 1.5-14 | NA |
gert | gert | 1.6.0 | NA |
ggeffects | ggeffects | 1.1.2 | NA |
gghighlight | gghighlight | 0.3.2 | NA |
ggmap | ggmap | 3.0.0 | NA |
ggplot2 | ggplot2 | 3.3.6 | NA |
ggpubr | ggpubr | 0.4.0 | NA |
ggrepel | ggrepel | 0.9.1 | NA |
ggridges | ggridges | 0.5.3 | NA |
ggsci | ggsci | 2.9 | NA |
ggsignif | ggsignif | 0.6.3 | NA |
gh | gh | 1.3.0 | NA |
GISTools | GISTools | 0.7-4 | NA |
gitcreds | gitcreds | 0.1.1 | NA |
glmmTMB | glmmTMB | 1.1.3 | NA |
globals | globals | 0.15.0 | NA |
glue | glue | 1.6.2 | NA |
gmodels | gmodels | 2.18.1.1 | NA |
goftest | goftest | 1.2-3 | NA |
googledrive | googledrive | 2.0.0 | NA |
googlesheets4 | googlesheets4 | 1.0.0 | NA |
gridExtra | gridExtra | 2.3 | NA |
gstat | gstat | 2.0-9 | NA |
gtable | gtable | 0.3.0 | NA |
gtools | gtools | 3.9.2.1 | NA |
haven | haven | 2.5.0 | NA |
hdf5r | hdf5r | 1.3.5 | NA |
hexbin | hexbin | 1.28.2 | NA |
highr | highr | 0.9 | NA |
Hmisc | Hmisc | 4.7-0 | NA |
hms | hms | 1.1.1 | NA |
htmlTable | htmlTable | 2.4.0 | NA |
htmltools | htmltools | 0.5.2 | NA |
htmlwidgets | htmlwidgets | 1.5.4 | NA |
httpcode | httpcode | 0.3.0 | NA |
httpuv | httpuv | 1.6.5 | NA |
httr | httr | 1.4.3 | NA |
ids | ids | 1.0.1 | NA |
igraph | igraph | 1.3.1 | NA |
ini | ini | 0.3.1 | NA |
inline | inline | 0.3.19 | NA |
insight | insight | 0.17.1 | NA |
intervals | intervals | 0.15.2 | NA |
IRdisplay | IRdisplay | 1.1 | NA |
IRkernel | IRkernel | 1.3 | NA |
isoband | isoband | 0.2.5 | NA |
iterators | iterators | 1.0.14 | NA |
jpeg | jpeg | 0.1-9 | NA |
jqr | jqr | 1.2.3 | NA |
jquerylib | jquerylib | 0.1.4 | NA |
jsonify | jsonify | 1.2.1 | NA |
jsonlite | jsonlite | 1.8.0 | NA |
jtools | jtools | 2.2.0 | NA |
kableExtra | kableExtra | 1.3.4 | NA |
knitr | knitr | 1.39 | NA |
labeling | labeling | 0.4.2 | NA |
later | later | 1.3.0 | NA |
latticeExtra | latticeExtra | 0.6-29 | NA |
lazyeval | lazyeval | 0.2.2 | NA |
leafem | leafem | 0.2.0 | NA |
leaflet | leaflet | 2.1.1 | NA |
leaflet.providers | leaflet.providers | 1.9.0 | NA |
leafpop | leafpop | 0.1.0 | NA |
leafsync | leafsync | 0.1.0 | NA |
leaps | leaps | 3.1 | NA |
LearnBayes | LearnBayes | 2.15.1 | NA |
lidR | lidR | 4.0.1 | NA |
lifecycle | lifecycle | 1.0.1 | NA |
listenv | listenv | 0.8.0 | NA |
lme4 | lme4 | 1.1-29 | NA |
lmtest | lmtest | 0.9-40 | NA |
loo | loo | 2.5.1 | NA |
lubridate | lubridate | 1.8.0 | NA |
lwgeom | lwgeom | 0.2-8 | NA |
magrittr | magrittr | 2.0.3 | NA |
mapdata | mapdata | 2.3.0 | NA |
maps | maps | 3.4.0 | NA |
maptools | maptools | 1.1-4 | NA |
mapview | mapview | 2.11.0 | NA |
markdown | markdown | 1.1 | NA |
MASS | MASS | 7.3-57 | recommended |
MatrixModels | MatrixModels | 0.5-0 | NA |
matrixStats | matrixStats | 0.62.0 | NA |
memoise | memoise | 2.0.1 | NA |
merTools | merTools | 0.5.2 | NA |
mice | mice | 3.14.0 | NA |
mime | mime | 0.12 | NA |
miniUI | miniUI | 0.1.1.1 | NA |
minqa | minqa | 1.2.4 | NA |
modelr | modelr | 0.1.8 | NA |
munsell | munsell | 0.5.0 | NA |
mvtnorm | mvtnorm | 1.1-3 | NA |
ncdf4 | ncdf4 | 1.19 | NA |
ncmeta | ncmeta | 0.3.0 | NA |
nleqslv | nleqslv | 3.3.2 | NA |
nlme | nlme | 3.1-157 | recommended |
nloptr | nloptr | 2.0.2 | NA |
numDeriv | numDeriv | 2016.8-1.1 | NA |
openssl | openssl | 2.0.1 | NA |
pander | pander | 0.6.5 | NA |
parallelly | parallelly | 1.31.1 | NA |
parameters | parameters | 0.17.0 | NA |
patchwork | patchwork | 1.1.1 | NA |
pbdZMQ | pbdZMQ | 0.3-7 | NA |
pbkrtest | pbkrtest | 0.5.1 | NA |
performance | performance | 0.9.0 | NA |
pillar | pillar | 1.7.0 | NA |
pkgbuild | pkgbuild | 1.3.1 | NA |
pkgconfig | pkgconfig | 2.0.3 | NA |
pkgload | pkgload | 1.2.4 | NA |
plogr | plogr | 0.2.0 | NA |
plyr | plyr | 1.8.7 | NA |
png | png | 0.1-7 | NA |
polyclip | polyclip | 1.10-0 | NA |
polynom | polynom | 1.4-1 | NA |
posterior | posterior | 1.2.1 | NA |
praise | praise | 1.0.0 | NA |
prettyunits | prettyunits | 1.1.1 | NA |
processx | processx | 3.5.3 | NA |
progress | progress | 1.2.2 | NA |
proj4 | proj4 | 1.0-11 | NA |
promises | promises | 1.2.0.1 | NA |
protolite | protolite | 2.1.1 | NA |
proxy | proxy | 0.4-26 | NA |
ps | ps | 1.7.0 | NA |
purrr | purrr | 0.3.4 | NA |
quantreg | quantreg | 5.93 | NA |
R6 | R6 | 2.5.1 | NA |
randomForest | randomForest | 4.7-1.1 | NA |
rapidjsonr | rapidjsonr | 1.2.0 | NA |
rappdirs | rappdirs | 0.3.3 | NA |
raster | raster | 3.5-15 | NA |
rcmdcheck | rcmdcheck | 1.4.0 | NA |
RColorBrewer | RColorBrewer | 1.1-3 | NA |
Rcpp | Rcpp | 1.0.8.3 | NA |
RcppArmadillo | RcppArmadillo | 0.11.1.1.0 | NA |
RcppEigen | RcppEigen | 0.3.3.9.2 | NA |
RcppParallel | RcppParallel | 5.1.5 | NA |
RCurl | RCurl | 1.98-1.6 | NA |
readr | readr | 2.1.2 | NA |
readxl | readxl | 1.4.0 | NA |
rematch | rematch | 1.0.1 | NA |
rematch2 | rematch2 | 2.1.2 | NA |
remotes | remotes | 2.4.2 | NA |
repr | repr | 1.1.4 | NA |
reprex | reprex | 2.0.1 | NA |
reshape2 | reshape2 | 1.4.4 | NA |
rgdal | rgdal | 1.5-32 | NA |
rgeos | rgeos | 0.5-9 | NA |
rgl | rgl | 0.108.3.2 | NA |
RgoogleMaps | RgoogleMaps | 1.4.5.3 | NA |
rhdf5 | rhdf5 | 2.40.0 | NA |
rhdf5filters | rhdf5filters | 1.8.0 | NA |
Rhdf5lib | Rhdf5lib | 1.18.2 | NA |
rjson | rjson | 0.2.21 | NA |
rlang | rlang | 1.0.2 | NA |
rlas | rlas | 1.5.3 | NA |
RMariaDB | RMariaDB | 1.2.1 | NA |
rmarkdown | rmarkdown | 2.14 | NA |
RNetCDF | RNetCDF | 2.5-2 | NA |
roxygen2 | roxygen2 | 7.2.0 | NA |
rpostgis | rpostgis | 1.4.3 | NA |
RPostgres | RPostgres | 1.4.4 | NA |
RPostgreSQL | RPostgreSQL | 0.7-3 | NA |
rprojroot | rprojroot | 2.0.3 | NA |
RSQLite | RSQLite | 2.2.14 | NA |
rstan | rstan | 2.21.5 | NA |
rstantools | rstantools | 2.2.0 | NA |
rstatix | rstatix | 0.7.0 | NA |
rstudioapi | rstudioapi | 0.13 | NA |
rversions | rversions | 2.1.1 | NA |
rvest | rvest | 1.0.2 | NA |
s2 | s2 | 1.0.7 | NA |
sass | sass | 0.4.1 | NA |
satellite | satellite | 1.0.4 | NA |
scales | scales | 1.2.0 | NA |
selectr | selectr | 0.4-2 | NA |
servr | servr | 0.24 | NA |
sessioninfo | sessioninfo | 1.2.2 | NA |
sf | sf | 1.0-7 | NA |
sfarrow | sfarrow | 0.4.1 | NA |
sfheaders | sfheaders | 0.4.0 | NA |
shiny | shiny | 1.7.1 | NA |
shinyjs | shinyjs | 2.1.0 | NA |
shinystan | shinystan | 2.6.0 | NA |
shinythemes | shinythemes | 1.2.0 | NA |
sjlabelled | sjlabelled | 1.2.0 | NA |
sjmisc | sjmisc | 2.8.9 | NA |
sjPlot | sjPlot | 2.8.10 | NA |
sjstats | sjstats | 0.18.1 | NA |
sourcetools | sourcetools | 0.1.7 | NA |
sp | sp | 1.4-7 | NA |
spacetime | spacetime | 1.2-6 | NA |
spam | spam | 2.8-0 | NA |
sparseinv | sparseinv | 0.1.3 | NA |
SparseM | SparseM | 1.81 | NA |
spatialreg | spatialreg | 1.2-3 | NA |
spatstat | spatstat | 2.3-4 | NA |
spatstat.core | spatstat.core | 2.4-4 | NA |
spatstat.data | spatstat.data | 2.2-0 | NA |
spatstat.geom | spatstat.geom | 2.4-0 | NA |
spatstat.linnet | spatstat.linnet | 2.3-2 | NA |
spatstat.random | spatstat.random | 2.2-0 | NA |
spatstat.sparse | spatstat.sparse | 2.1-1 | NA |
spatstat.utils | spatstat.utils | 2.3-1 | NA |
spData | spData | 2.0.1 | NA |
spDataLarge | spDataLarge | 2.0.6 | NA |
spdep | spdep | 1.2-4 | NA |
spgwr | spgwr | 0.6-35 | NA |
splancs | splancs | 2.01-43 | NA |
StanHeaders | StanHeaders | 2.21.0-7 | NA |
stargazer | stargazer | 5.2.3 | NA |
stars | stars | 0.5-5 | NA |
statmod | statmod | 1.4.36 | NA |
stringi | stringi | 1.7.6 | NA |
stringr | stringr | 1.4.0 | NA |
svglite | svglite | 2.1.0 | NA |
sys | sys | 3.4 | NA |
systemfonts | systemfonts | 1.0.4 | NA |
tensor | tensor | 1.5 | NA |
tensorA | tensorA | 0.36.2 | NA |
terra | terra | 1.5-21 | NA |
testthat | testthat | 3.1.4 | NA |
threejs | threejs | 0.3.3 | NA |
tibble | tibble | 3.1.7 | NA |
tidync | tidync | 0.2.4 | NA |
tidyr | tidyr | 1.2.0 | NA |
tidyselect | tidyselect | 1.1.2 | NA |
tidyverse | tidyverse | 1.3.1 | NA |
tinytex | tinytex | 0.39 | NA |
tmap | tmap | 3.3-3 | NA |
tmaptools | tmaptools | 3.1-1 | NA |
TMB | TMB | 1.8.1 | NA |
TraMineR | TraMineR | 2.2-3 | NA |
triebeard | triebeard | 0.3.0 | NA |
tufte | tufte | 0.12 | NA |
tzdb | tzdb | 0.3.0 | NA |
units | units | 0.8-0 | NA |
urltools | urltools | 1.7.3 | NA |
usethis | usethis | 2.1.5 | NA |
utf8 | utf8 | 1.2.2 | NA |
uuid | uuid | 1.1-0 | NA |
V8 | V8 | 4.2.0 | NA |
vctrs | vctrs | 0.4.1 | NA |
viridis | viridis | 0.6.2 | NA |
viridisLite | viridisLite | 0.4.0 | NA |
vroom | vroom | 1.5.7 | NA |
waldo | waldo | 0.4.0 | NA |
webshot | webshot | 0.5.3 | NA |
weights | weights | 1.0.4 | NA |
whisker | whisker | 0.4 | NA |
widgetframe | widgetframe | 0.3.1 | NA |
withr | withr | 2.5.0 | NA |
wk | wk | 0.6.0 | NA |
xfun | xfun | 0.31 | NA |
XML | XML | 3.99-0.9 | NA |
xml2 | xml2 | 1.3.3 | NA |
xopen | xopen | 1.0.0 | NA |
xtable | xtable | 1.8-4 | NA |
xts | xts | 0.12.1 | NA |
yaml | yaml | 2.3.5 | NA |
zip | zip | 2.2.0 | NA |
zoo | zoo | 1.8-10 | NA |
base | base | 4.2.0 | base |
boot | boot | 1.3-28 | recommended |
class | class | 7.3-20 | recommended |
cluster | cluster | 2.1.3 | recommended |
codetools | codetools | 0.2-18 | recommended |
compiler | compiler | 4.2.0 | base |
datasets | datasets | 4.2.0 | base |
foreign | foreign | 0.8-82 | recommended |
graphics | graphics | 4.2.0 | base |
grDevices | grDevices | 4.2.0 | base |
grid | grid | 4.2.0 | base |
KernSmooth | KernSmooth | 2.23-20 | recommended |
lattice | lattice | 0.20-45 | recommended |
MASS.1 | MASS | 7.3-57 | recommended |
Matrix | Matrix | 1.4-1 | recommended |
methods | methods | 4.2.0 | base |
mgcv | mgcv | 1.8-40 | recommended |
nlme.1 | nlme | 3.1-157 | recommended |
nnet | nnet | 7.3-17 | recommended |
parallel | parallel | 4.2.0 | base |
rpart | rpart | 4.1.16 | recommended |
spatial | spatial | 7.3-11 | recommended |
splines | splines | 4.2.0 | base |
stats | stats | 4.2.0 | base |
stats4 | stats4 | 4.2.0 | base |
survival | survival | 3.2-13 | recommended |
tcltk | tcltk | 4.2.0 | base |
tools | tools | 4.2.0 | base |
utils | utils | 4.2.0 | base |
Install
The Docker image can be downloaded with the following command:
docker pull darribas/gds:9.0