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Python + R: gds

The gds flavour contains a full gds_py stack, as well as an entire R stack. This includes the following:

  • An R stack composed of a list of libraries designed to closely mirror that provided by the excellent rocker/geospatial project.
  • An R kernel for Jupyter Lab/Notebook, provided by the IRkernel project.
  • An interface to R from Python Jupyter notebooks, provided by rpy2 project.

R Libraries

A full list of Python libraries installed in the gds_py environment is available below:

`gds` R library list (click to expand)
 PackageVersionPriority
abindabind1.4-5NA
arealareal0.1.7NA
armarm1.12-2NA
arrowarrow8.0.0.20220522NA
askpassaskpass1.1NA
assertthatassertthat0.2.1NA
backportsbackports1.4.1NA
base64encbase64enc0.1-3NA
bayesplotbayesplot1.9.0NA
bayestestRbayestestR0.12.1NA
BHBH1.78.0-0NA
BiocManagerBiocManager1.30.18NA
BiocVersionBiocVersion3.15.2NA
bitbit4.0.4NA
bit64bit644.0.5NA
bitopsbitops1.0-7NA
blmeblme1.0-5NA
blobblob1.2.3NA
bookdownbookdown0.26NA
brewbrew1.0-7NA
bridgesamplingbridgesampling1.1-2NA
briobrio1.1.3NA
brmsbrms2.17.0NA
BrobdingnagBrobdingnag1.2-7NA
broombroom0.8.0NA
broom.mixedbroom.mixed0.2.9.4NA
bslibbslib0.3.1NA
cachemcachem1.0.6NA
callrcallr3.7.0NA
carcar3.0-13NA
carDatacarData3.0-5NA
cellrangercellranger1.1.0NA
checkmatecheckmate2.1.0NA
classIntclassInt0.4-3NA
clicli3.3.0NA
cliprclipr0.8.0NA
cNORMcNORM3.0.1NA
codacoda0.19-4NA
colorspacecolorspace2.0-3NA
colourpickercolourpicker1.1.1NA
commonmarkcommonmark1.8.0NA
corrplotcorrplot0.92NA
cowplotcowplot1.1.1NA
cpp11cpp110.4.2NA
crayoncrayon1.5.1NA
credentialscredentials1.3.2NA
crosstalkcrosstalk1.2.0NA
crulcrul1.2.0NA
curlcurl4.3.2NA
data.tabledata.table1.14.2NA
datawizarddatawizard0.4.1NA
DBIDBI1.1.2NA
dbplyrdbplyr2.1.1NA
deldirdeldir1.0-6NA
descdesc1.4.1NA
devtoolsdevtools2.4.3NA
dichromatdichromat2.0-0.1NA
diffobjdiffobj0.3.5NA
digestdigest0.6.29NA
distributionaldistributional0.3.0NA
dotCall64dotCall641.0-1NA
dplyrdplyr1.0.9NA
DTDT0.23NA
dtplyrdtplyr1.2.1NA
dygraphsdygraphs1.1.1.6NA
e1071e10711.7-9NA
effectsizeeffectsize0.6.0.1NA
ellipsisellipsis0.3.2NA
emmeansemmeans1.7.4-1NA
estimabilityestimability1.3NA
evaluateevaluate0.15NA
expmexpm0.999-6NA
fansifansi1.0.3NA
farverfarver2.1.0NA
fastmapfastmap1.1.0NA
featherfeather0.3.5NA
FNNFNN1.1.3.1NA
fontawesomefontawesome0.2.2NA
forcatsforcats0.5.1NA
foreachforeach1.5.2NA
FormulaFormula1.2-4NA
FRKFRK2.0.5NA
fsfs1.5.2NA
fstfst0.9.8NA
fstcorefstcore0.9.12NA
furrrfurrr0.3.0NA
futurefuture1.25.0NA
garglegargle1.2.0NA
gdatagdata2.18.0.1NA
genericsgenerics0.1.2NA
geocompkggeocompkg2.0.6NA
geojsongeojson0.3.4NA
geojsoniogeojsonio0.9.4NA
geojsonsfgeojsonsf2.0.2NA
geometriesgeometries0.2.0NA
geospheregeosphere1.5-14NA
gertgert1.6.0NA
ggeffectsggeffects1.1.2NA
gghighlightgghighlight0.3.2NA
ggmapggmap3.0.0NA
ggplot2ggplot23.3.6NA
ggpubrggpubr0.4.0NA
ggrepelggrepel0.9.1NA
ggridgesggridges0.5.3NA
ggsciggsci2.9NA
ggsignifggsignif0.6.3NA
ghgh1.3.0NA
GISToolsGISTools0.7-4NA
gitcredsgitcreds0.1.1NA
glmmTMBglmmTMB1.1.3NA
globalsglobals0.15.0NA
glueglue1.6.2NA
gmodelsgmodels2.18.1.1NA
goftestgoftest1.2-3NA
googledrivegoogledrive2.0.0NA
googlesheets4googlesheets41.0.0NA
gridExtragridExtra2.3NA
gstatgstat2.0-9NA
gtablegtable0.3.0NA
gtoolsgtools3.9.2.1NA
havenhaven2.5.0NA
hdf5rhdf5r1.3.5NA
hexbinhexbin1.28.2NA
highrhighr0.9NA
HmiscHmisc4.7-0NA
hmshms1.1.1NA
htmlTablehtmlTable2.4.0NA
htmltoolshtmltools0.5.2NA
htmlwidgetshtmlwidgets1.5.4NA
httpcodehttpcode0.3.0NA
httpuvhttpuv1.6.5NA
httrhttr1.4.3NA
idsids1.0.1NA
igraphigraph1.3.1NA
iniini0.3.1NA
inlineinline0.3.19NA
insightinsight0.17.1NA
intervalsintervals0.15.2NA
IRdisplayIRdisplay1.1NA
IRkernelIRkernel1.3NA
isobandisoband0.2.5NA
iteratorsiterators1.0.14NA
jpegjpeg0.1-9NA
jqrjqr1.2.3NA
jquerylibjquerylib0.1.4NA
jsonifyjsonify1.2.1NA
jsonlitejsonlite1.8.0NA
jtoolsjtools2.2.0NA
kableExtrakableExtra1.3.4NA
knitrknitr1.39NA
labelinglabeling0.4.2NA
laterlater1.3.0NA
latticeExtralatticeExtra0.6-29NA
lazyevallazyeval0.2.2NA
leafemleafem0.2.0NA
leafletleaflet2.1.1NA
leaflet.providersleaflet.providers1.9.0NA
leafpopleafpop0.1.0NA
leafsyncleafsync0.1.0NA
leapsleaps3.1NA
LearnBayesLearnBayes2.15.1NA
lidRlidR4.0.1NA
lifecyclelifecycle1.0.1NA
listenvlistenv0.8.0NA
lme4lme41.1-29NA
lmtestlmtest0.9-40NA
looloo2.5.1NA
lubridatelubridate1.8.0NA
lwgeomlwgeom0.2-8NA
magrittrmagrittr2.0.3NA
mapdatamapdata2.3.0NA
mapsmaps3.4.0NA
maptoolsmaptools1.1-4NA
mapviewmapview2.11.0NA
markdownmarkdown1.1NA
MASSMASS7.3-57recommended
MatrixModelsMatrixModels0.5-0NA
matrixStatsmatrixStats0.62.0NA
memoisememoise2.0.1NA
merToolsmerTools0.5.2NA
micemice3.14.0NA
mimemime0.12NA
miniUIminiUI0.1.1.1NA
minqaminqa1.2.4NA
modelrmodelr0.1.8NA
munsellmunsell0.5.0NA
mvtnormmvtnorm1.1-3NA
ncdf4ncdf41.19NA
ncmetancmeta0.3.0NA
nleqslvnleqslv3.3.2NA
nlmenlme3.1-157recommended
nloptrnloptr2.0.2NA
numDerivnumDeriv2016.8-1.1NA
opensslopenssl2.0.1NA
panderpander0.6.5NA
parallellyparallelly1.31.1NA
parametersparameters0.17.0NA
patchworkpatchwork1.1.1NA
pbdZMQpbdZMQ0.3-7NA
pbkrtestpbkrtest0.5.1NA
performanceperformance0.9.0NA
pillarpillar1.7.0NA
pkgbuildpkgbuild1.3.1NA
pkgconfigpkgconfig2.0.3NA
pkgloadpkgload1.2.4NA
plogrplogr0.2.0NA
plyrplyr1.8.7NA
pngpng0.1-7NA
polyclippolyclip1.10-0NA
polynompolynom1.4-1NA
posteriorposterior1.2.1NA
praisepraise1.0.0NA
prettyunitsprettyunits1.1.1NA
processxprocessx3.5.3NA
progressprogress1.2.2NA
proj4proj41.0-11NA
promisespromises1.2.0.1NA
protoliteprotolite2.1.1NA
proxyproxy0.4-26NA
psps1.7.0NA
purrrpurrr0.3.4NA
quantregquantreg5.93NA
R6R62.5.1NA
randomForestrandomForest4.7-1.1NA
rapidjsonrrapidjsonr1.2.0NA
rappdirsrappdirs0.3.3NA
rasterraster3.5-15NA
rcmdcheckrcmdcheck1.4.0NA
RColorBrewerRColorBrewer1.1-3NA
RcppRcpp1.0.8.3NA
RcppArmadilloRcppArmadillo0.11.1.1.0NA
RcppEigenRcppEigen0.3.3.9.2NA
RcppParallelRcppParallel5.1.5NA
RCurlRCurl1.98-1.6NA
readrreadr2.1.2NA
readxlreadxl1.4.0NA
rematchrematch1.0.1NA
rematch2rematch22.1.2NA
remotesremotes2.4.2NA
reprrepr1.1.4NA
reprexreprex2.0.1NA
reshape2reshape21.4.4NA
rgdalrgdal1.5-32NA
rgeosrgeos0.5-9NA
rglrgl0.108.3.2NA
RgoogleMapsRgoogleMaps1.4.5.3NA
rhdf5rhdf52.40.0NA
rhdf5filtersrhdf5filters1.8.0NA
Rhdf5libRhdf5lib1.18.2NA
rjsonrjson0.2.21NA
rlangrlang1.0.2NA
rlasrlas1.5.3NA
RMariaDBRMariaDB1.2.1NA
rmarkdownrmarkdown2.14NA
RNetCDFRNetCDF2.5-2NA
roxygen2roxygen27.2.0NA
rpostgisrpostgis1.4.3NA
RPostgresRPostgres1.4.4NA
RPostgreSQLRPostgreSQL0.7-3NA
rprojrootrprojroot2.0.3NA
RSQLiteRSQLite2.2.14NA
rstanrstan2.21.5NA
rstantoolsrstantools2.2.0NA
rstatixrstatix0.7.0NA
rstudioapirstudioapi0.13NA
rversionsrversions2.1.1NA
rvestrvest1.0.2NA
s2s21.0.7NA
sasssass0.4.1NA
satellitesatellite1.0.4NA
scalesscales1.2.0NA
selectrselectr0.4-2NA
servrservr0.24NA
sessioninfosessioninfo1.2.2NA
sfsf1.0-7NA
sfarrowsfarrow0.4.1NA
sfheaderssfheaders0.4.0NA
shinyshiny1.7.1NA
shinyjsshinyjs2.1.0NA
shinystanshinystan2.6.0NA
shinythemesshinythemes1.2.0NA
sjlabelledsjlabelled1.2.0NA
sjmiscsjmisc2.8.9NA
sjPlotsjPlot2.8.10NA
sjstatssjstats0.18.1NA
sourcetoolssourcetools0.1.7NA
spsp1.4-7NA
spacetimespacetime1.2-6NA
spamspam2.8-0NA
sparseinvsparseinv0.1.3NA
SparseMSparseM1.81NA
spatialregspatialreg1.2-3NA
spatstatspatstat2.3-4NA
spatstat.corespatstat.core2.4-4NA
spatstat.dataspatstat.data2.2-0NA
spatstat.geomspatstat.geom2.4-0NA
spatstat.linnetspatstat.linnet2.3-2NA
spatstat.randomspatstat.random2.2-0NA
spatstat.sparsespatstat.sparse2.1-1NA
spatstat.utilsspatstat.utils2.3-1NA
spDataspData2.0.1NA
spDataLargespDataLarge2.0.6NA
spdepspdep1.2-4NA
spgwrspgwr0.6-35NA
splancssplancs2.01-43NA
StanHeadersStanHeaders2.21.0-7NA
stargazerstargazer5.2.3NA
starsstars0.5-5NA
statmodstatmod1.4.36NA
stringistringi1.7.6NA
stringrstringr1.4.0NA
svglitesvglite2.1.0NA
syssys3.4NA
systemfontssystemfonts1.0.4NA
tensortensor1.5NA
tensorAtensorA0.36.2NA
terraterra1.5-21NA
testthattestthat3.1.4NA
threejsthreejs0.3.3NA
tibbletibble3.1.7NA
tidynctidync0.2.4NA
tidyrtidyr1.2.0NA
tidyselecttidyselect1.1.2NA
tidyversetidyverse1.3.1NA
tinytextinytex0.39NA
tmaptmap3.3-3NA
tmaptoolstmaptools3.1-1NA
TMBTMB1.8.1NA
TraMineRTraMineR2.2-3NA
triebeardtriebeard0.3.0NA
tuftetufte0.12NA
tzdbtzdb0.3.0NA
unitsunits0.8-0NA
urltoolsurltools1.7.3NA
usethisusethis2.1.5NA
utf8utf81.2.2NA
uuiduuid1.1-0NA
V8V84.2.0NA
vctrsvctrs0.4.1NA
viridisviridis0.6.2NA
viridisLiteviridisLite0.4.0NA
vroomvroom1.5.7NA
waldowaldo0.4.0NA
webshotwebshot0.5.3NA
weightsweights1.0.4NA
whiskerwhisker0.4NA
widgetframewidgetframe0.3.1NA
withrwithr2.5.0NA
wkwk0.6.0NA
xfunxfun0.31NA
XMLXML3.99-0.9NA
xml2xml21.3.3NA
xopenxopen1.0.0NA
xtablextable1.8-4NA
xtsxts0.12.1NA
yamlyaml2.3.5NA
zipzip2.2.0NA
zoozoo1.8-10NA
basebase4.2.0base
bootboot1.3-28recommended
classclass7.3-20recommended
clustercluster2.1.3recommended
codetoolscodetools0.2-18recommended
compilercompiler4.2.0base
datasetsdatasets4.2.0base
foreignforeign0.8-82recommended
graphicsgraphics4.2.0base
grDevicesgrDevices4.2.0base
gridgrid4.2.0base
KernSmoothKernSmooth2.23-20recommended
latticelattice0.20-45recommended
MASS.1MASS7.3-57recommended
MatrixMatrix1.4-1recommended
methodsmethods4.2.0base
mgcvmgcv1.8-40recommended
nlme.1nlme3.1-157recommended
nnetnnet7.3-17recommended
parallelparallel4.2.0base
rpartrpart4.1.16recommended
spatialspatial7.3-11recommended
splinessplines4.2.0base
statsstats4.2.0base
stats4stats44.2.0base
survivalsurvival3.2-13recommended
tcltktcltk4.2.0base
toolstools4.2.0base
utilsutils4.2.0base

Download table as .txt

Install

The Docker image can be downloaded with the following command:

docker pull darribas/gds:9.0