********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000)

For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme.nbcr.net.

This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs.  MAST is available
for interactive use and downloading at http://meme.nbcr.net.
********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
DATAFILE= meme_motif_archea.names_2.fna
ALPHABET= ACGT
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
NC_000909.2              1.0000   1577  NC_002578.1              1.0000   1570  
NC_002607.1              1.0000   1572  NC_005877.1              1.0000   1568  
NC_007355.1              1.0000   1577  NC_007426.1              1.0000   1565  
NC_007681.1              1.0000   1589  NC_007796.1              1.0000   1565  
NC_007955.1              1.0000   1575  NC_008212.2              1.0000   1572  
NC_008942.1              1.0000   1564  NC_009440.1              1.0000   1606  
NC_009515.2              1.0000   1575  NC_009712.1              1.0000   1565  
NC_012028.1              1.0000   1569  NC_013201.1              1.0000   1571  
NC_013202.1              1.0000   1572  NC_013849.1              1.0000   1610  
NC_013926.1              1.0000   1572  NC_014205.1              1.0000   1610  
NC_014253.1              1.0000   1576  NC_014507.1              1.0000   1567  
NC_014729.1              1.0000   1578  NC_015216.1              1.0000   1584  
NC_015416.1              1.0000   1567  NC_015518.1              1.0000   1598  
NC_015954.1              1.0000   1572  NC_017461.1              1.0000   1601  
NC_017527.1              1.0000   1574  NC_020892.1              1.0000   1564  
NC_021313.1              1.0000   1570  NC_021592.1              1.0000   1570  
NC_022093.1              1.0000   1612  
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme meme_motif_archea.names_2.fna -dna -nmotifs 50 -mod zoops -nostatus -oc meme_motif_archea.names_2.meme -w 60 -maxsize 2000000 

model:  mod=         zoops    nmotifs=        50    evt=           inf
object function=  E-value of product of p-values
width:  minw=           60    maxw=           60    minic=        0.00
width:  wg=             11    ws=              1    endgaps=       yes
nsites: minsites=        2    maxsites=       33    wnsites=       0.8
theta:  prob=            1    spmap=         uni    spfuzz=        0.5
global: substring=     yes    branching=      no    wbranch=        no
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
data:   n=           52077    N=              33
strands: +
sample: seed=            0    seqfrac=         1
Letter frequencies in dataset:
A 0.236 C 0.254 G 0.318 T 0.192 
Background letter frequencies (from dataset with add-one prior applied):
A 0.236 C 0.254 G 0.318 T 0.192 
********************************************************************************


********************************************************************************
MOTIF  1 MEME	width =  60  sites =  33  llr = 2516  E-value = 1.8e-854
********************************************************************************
--------------------------------------------------------------------------------
	Motif 1 Description
--------------------------------------------------------------------------------
Simplified        A  ::aaa:::aaa::aa::::::::::a::a::8:aa::::4::a1::::::::::aa::::
pos.-specific     C  :::::a:::::::::::::a:::::::a:a5:a::831::::::98::a::1:1:::1::
probability       G  :a:::::::::aa::::aa:aaaaa:a::::2:::279a:aa:9:2:a:aa:::::::aa
matrix            T  a:::::aa:::::::aa:::::::::::::4::::::::6::::11a::::9a9::a9::

         bits    2.4 *     **       **                             *     *   *   
                 2.1 * *** *****  ****        *  *    **       *   *     ******  
                 1.9 * *********  ****  *     * ***  ***       *   * *  *******  
                 1.7 *********************** ******  ***   * * * * **************
Relative         1.4 ****************************** *****  * *** * **************
Entropy          1.2 ****************************** ***** ******** **************
(110.0 bits)     1.0 ************************************ ***********************
                 0.7 ************************************************************
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATTGG
consensus                                          T     C  A                    
sequence                                                                         
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_017527.1                 897  5.16e-36 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG ATTCAACGCC
NC_014507.1                 891  5.16e-36 GTCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_014253.1                 895  5.16e-36 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_013849.1                 931  5.16e-36 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG ATTCAACGCC
NC_007955.1                 898  5.16e-36 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_000909.2                 901  5.16e-36 GTCGCAAGAC TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG ATTCAACGCC
NC_021313.1                 898  2.07e-35 TCTGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_015954.1                 898  2.07e-35 TCTGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_014729.1                 895  2.07e-35 TCCGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_013202.1                 898  2.07e-35 TCTGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_013201.1                 899  2.07e-35 TCCGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_012028.1                 897  2.07e-35 TCCGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_008212.2                 899  2.07e-35 TCTGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_007426.1                 893  2.07e-35 TCTGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_002607.1                 897  2.07e-35 TCTGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_014205.1                 921  3.74e-35 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGTTTAATTGG AGTCAACGCC
NC_015216.1                 902  4.85e-35 GTCGCAAGAC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGG ATTCAACGCC
NC_009515.2                 897  4.85e-35 GTCGCAAGAC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGG ATTCAACGCC
NC_007681.1                 907  4.85e-35 GTCGCAAGAC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGG ATTCAACGCC
NC_015416.1                 890  5.71e-35 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCTTGCGGTTTAATTGG ATTCAACGCC
NC_008942.1                 888  1.31e-34 GTCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACAGGTGGAGCCTGCGGTTTAATTGG ATTCAACGCC
NC_007355.1                 900  1.31e-34 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACAACAACGGGTGGAGCCTGCGGTTTAATTGG ACTCAACGCC
NC_009712.1                 889  1.65e-34 GTCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGG ACTCAACGCC
NC_007796.1                 890  1.65e-34 GTCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGG ACTCAACGCC
NC_020892.1                 890  4.86e-34 TCCGCAAGGA TGAAACTTAAAGGAATTGGCGGGGGAGCACCGCAACGGGAGGAGCGTGCGGTTTAATTGG ATTCAACACC
NC_017461.1                 922  4.86e-34 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGCTTAATTGG AGTCAACGCC
NC_002578.1                 897  4.86e-34 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCGCAACGGGAGGAGCGTGCGGTTTAATTGG ATTCAACGCC
NC_022093.1                 929  3.79e-33 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGAAGCTTGCGGTTTAATTGG AGTCAACGCC
NC_013926.1                 896  4.30e-33 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGAGAGCACTGCAACGGGAGGAGCGTGCGGTTTAATTGG ATTCAACGCC
NC_021592.1                 894  7.41e-33 GTCGCAAGAC TGAAACTTAAAGGAATTGGCGGGGGAGCACCGCAACGGGAGGAATGTGCGGTTTAATTGG ATTCAACGCC
NC_005877.1                 904  7.41e-33 GTCGCAAGAC TGAAACTTAAAGGAATTGGCGGGGGAGCACCGCAACGGGAGGAATGTGCGGTTTAATTGG ATTCAACGCC
NC_015518.1                 917  9.26e-33 CCCGCAAGGG TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGG AGTCAACGCC
NC_009440.1                 916  9.26e-33 GCCGCAAGGC TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGG AGTCAACGCC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_017527.1                       5.2e-36  896_[+1]_618
NC_014507.1                       5.2e-36  890_[+1]_617
NC_014253.1                       5.2e-36  894_[+1]_622
NC_013849.1                       5.2e-36  930_[+1]_620
NC_007955.1                       5.2e-36  897_[+1]_618
NC_000909.2                       5.2e-36  900_[+1]_617
NC_021313.1                       2.1e-35  897_[+1]_613
NC_015954.1                       2.1e-35  897_[+1]_615
NC_014729.1                       2.1e-35  894_[+1]_624
NC_013202.1                       2.1e-35  897_[+1]_615
NC_013201.1                       2.1e-35  898_[+1]_613
NC_012028.1                       2.1e-35  896_[+1]_613
NC_008212.2                       2.1e-35  898_[+1]_614
NC_007426.1                       2.1e-35  892_[+1]_613
NC_002607.1                       2.1e-35  896_[+1]_616
NC_014205.1                       3.7e-35  920_[+1]_630
NC_015216.1                       4.8e-35  901_[+1]_623
NC_009515.2                       4.8e-35  896_[+1]_619
NC_007681.1                       4.8e-35  906_[+1]_623
NC_015416.1                       5.7e-35  889_[+1]_618
NC_008942.1                       1.3e-34  887_[+1]_617
NC_007355.1                       1.3e-34  899_[+1]_618
NC_009712.1                       1.6e-34  888_[+1]_617
NC_007796.1                       1.6e-34  889_[+1]_616
NC_020892.1                       4.9e-34  889_[+1]_615
NC_017461.1                       4.9e-34  921_[+1]_620
NC_002578.1                       4.9e-34  896_[+1]_614
NC_022093.1                       3.8e-33  928_[+1]_624
NC_013926.1                       4.3e-33  895_[+1]_617
NC_021592.1                       7.4e-33  893_[+1]_617
NC_005877.1                       7.4e-33  903_[+1]_605
NC_015518.1                       9.3e-33  916_[+1]_622
NC_009440.1                       9.3e-33  915_[+1]_631
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 1 width=60 seqs=33
NC_017527.1              (  897) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG  1 
NC_014507.1              (  891) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATTGG  1 
NC_014253.1              (  895) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG  1 
NC_013849.1              (  931) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG  1 
NC_007955.1              (  898) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG  1 
NC_000909.2              (  901) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG  1 
NC_021313.1              (  898) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_015954.1              (  898) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_014729.1              (  895) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_013202.1              (  898) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_013201.1              (  899) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_012028.1              (  897) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_008212.2              (  899) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_007426.1              (  893) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_002607.1              (  897) TGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGG  1 
NC_014205.1              (  921) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGTTTAATTGG  1 
NC_015216.1              (  902) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGG  1 
NC_009515.2              (  897) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGG  1 
NC_007681.1              (  907) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGG  1 
NC_015416.1              (  890) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCTTGCGGTTTAATTGG  1 
NC_008942.1              (  888) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACAGGTGGAGCCTGCGGTTTAATTGG  1 
NC_007355.1              (  900) TGAAACTTAAAGGAATTGGCGGGGGAGCACAACAACGGGTGGAGCCTGCGGTTTAATTGG  1 
NC_009712.1              (  889) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGG  1 
NC_007796.1              (  890) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGG  1 
NC_020892.1              (  890) TGAAACTTAAAGGAATTGGCGGGGGAGCACCGCAACGGGAGGAGCGTGCGGTTTAATTGG  1 
NC_017461.1              (  922) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGCTTAATTGG  1 
NC_002578.1              (  897) TGAAACTTAAAGGAATTGGCGGGGGAGCACCGCAACGGGAGGAGCGTGCGGTTTAATTGG  1 
NC_022093.1              (  929) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGAAGCTTGCGGTTTAATTGG  1 
NC_013926.1              (  896) TGAAACTTAAAGGAATTGGCGGGAGAGCACTGCAACGGGAGGAGCGTGCGGTTTAATTGG  1 
NC_021592.1              (  894) TGAAACTTAAAGGAATTGGCGGGGGAGCACCGCAACGGGAGGAATGTGCGGTTTAATTGG  1 
NC_005877.1              (  904) TGAAACTTAAAGGAATTGGCGGGGGAGCACCGCAACGGGAGGAATGTGCGGTTTAATTGG  1 
NC_015518.1              (  917) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGG  1 
NC_009440.1              (  916) TGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 1.8e-854 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
  -296  -1169    161  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
  -296    110  -1169    114 
   185  -1169   -107  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    174   -107  -1169 
  -296     10    113  -1169 
 -1169   -148    151  -1169 
 -1169  -1169    165  -1169 
    85  -1169  -1169    158 
 -1169  -1169    165  -1169 
  -296  -1169    161  -1169 
   208  -1169  -1169  -1169 
   -96  -1169    147  -1169 
 -1169    189  -1169   -166 
 -1169    163   -107   -166 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169   -148  -1169    224 
 -1169  -1169  -1169    238 
 -1169   -207  -1169    229 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169   -207  -1169    229 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 1.8e-854 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.030303  0.545455  0.000000  0.424242 
 0.848485  0.000000  0.151515  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.848485  0.151515  0.000000 
 0.030303  0.272727  0.696970  0.000000 
 0.000000  0.090909  0.909091  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.424242  0.000000  0.000000  0.575758 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.121212  0.000000  0.878788  0.000000 
 0.000000  0.939394  0.000000  0.060606 
 0.000000  0.787879  0.151515  0.060606 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.090909  0.000000  0.909091 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.060606  0.000000  0.939394 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.060606  0.000000  0.939394 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 regular expression
--------------------------------------------------------------------------------
TGAAACTTAAAGGAATTGGCGGGGGAGCAC[CT]ACAAC[GC]GG[TA]GGAGCCTGCGGTTTAATTGG
--------------------------------------------------------------------------------




Time 22.07 secs.

********************************************************************************


********************************************************************************
MOTIF  2 MEME	width =  60  sites =  33  llr = 2454  E-value = 5.9e-827
********************************************************************************
--------------------------------------------------------------------------------
	Motif 2 Description
--------------------------------------------------------------------------------
Simplified        A  :6a::2::12:aa:::::aa:aa:::a:::::a::::aa:::::1:2:::a::a::::11
pos.-specific     C  8:::::::21:::::a::::a:::::::a9:::::::::4a::a::8:::::a:aa:a91
probability       G  :4:aa8aa7:3::a::a::::::aa::8::a::aaaa:::::a:9a::aa::::::::::
matrix            T  2::::::::77:::a::a:::::::a:2:1:a:::::::6:a:::::a:::a::::a::8

         bits    2.4               *  *       *     *         *         *    *   
                 2.1   *        ** *  *** **  *     **    **  *     *  ** *  *   
                 1.9   *        ** ** ******  ** *  **    ** ** *   *  ********  
                 1.7   ***  *   ***** ********** ****** **** **** * ************ 
Relative         1.4 * *** **  ***************** *********** ********************
Entropy          1.2 * *** ** ***************************************************
(107.3 bits)     1.0 ******** ***************************************************
                 0.7 ************************************************************
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT
consensus            TG   A  C G                            C                    
sequence                                                                         
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_017527.1                1465  2.72e-36 CTGGGCTTTG CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGACGATG
NC_015416.1                1458  2.72e-36 TTGGGCTTTG CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGTTACGA
NC_014507.1                1458  2.72e-36 CTAGGTTTTG CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGAAATAA
NC_014253.1                1467  2.72e-36 CTAAATCTCG CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AAGCAAAAGA
NC_009712.1                1457  2.72e-36 CTAGGTTTTG CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGAATTTT
NC_007955.1                1467  2.72e-36 CTAAATTTCG CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AAGCAAGATC
NC_007796.1                1456  2.72e-36 CTGGGTTTTG CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGAAATGA
NC_007355.1                1469  2.72e-36 CTGTGCTTTG CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AAGCAAAAAA
NC_015954.1                1464  1.62e-35 CTGGGCTCCG CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT ATTGACCGGG
NC_014729.1                1460  1.62e-35 CTGGGCTTCG CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGATCGGG
NC_013202.1                1464  1.62e-35 CTGGGCTTCG CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGATCGGG
NC_008212.2                1463  1.62e-35 CTGGGCTTCG CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGAACGGG
NC_007426.1                1457  1.62e-35 CTGGGCTCCG CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGTCCGGG
NC_002607.1                1463  8.09e-35 CTGGGCTCCG CAAGGGGGATTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AACGTCCGAG
NC_008942.1                1455  1.79e-34 CTAGGTTCCG TGAGGAGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT AAAGAATGAT
NC_013849.1                1501  2.32e-34 CCAGGGTCCG CGAGGGGGGCTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT ACTGATGGGC
NC_012028.1                1460  2.98e-34 CTGGGCTTCG CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCA CCGACCCGAG
NC_013201.1                1463  9.04e-34 CTGGGCTTCG CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGAGGAATCTGCGGCTGGATCACCTCCT ACTGAACGGG
NC_021313.1                1462  9.78e-34 CTGGGTTCCG CAAGGGGGATTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCA CAGACCGGGA
NC_017461.1                1493  1.31e-33 CCTTTCCCTG CGAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT GATGGCACCG
NC_007681.1                1478  1.55e-33 CTAGGTTTTT TGAGGAGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT AATATACAAT
NC_013926.1                1466  1.83e-33 CTGGGGTCAG CGAGGAGGGTTAAGTCGTAACAAGGTATCCGTAGGGGAACCTGCGGATGGATCACCTCCT AAGTTTGCGA
NC_000909.2                1469  1.83e-33 TTGGGTTCAG CGAGGGGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT GAGAAAAAAG
NC_009515.2                1467  4.43e-33 CTAGTTTTTT TAAGGAGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT TACACTTTAT
NC_014205.1                1502  4.80e-33 TCCCCCCTCC CAAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCC GCCTGCGGGC
NC_015216.1                1475  8.46e-33 CTTGGTTCTT TGAGGAGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT TAAACAAAAA
NC_021592.1                1461  1.93e-32 CTGATGTCGG TGAGGAGGGTTAAGTCGTAACAAGGTATCCGTAGGGGAACCTGCGGATGGATCACCTCCA TGTGAAAGGC
NC_002578.1                1463  1.93e-32 CTGATGTCAG TGAGGAGGGTTAAGTCGTAACAAGGTATCCGTAGGGGAACCTGCGGATGGATCACCTCCA AGTTAGAACA
NC_015518.1                1490  4.67e-32 TTCTTCCTCG CGAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCAC ATTCCACAAC
NC_009440.1                1488  4.67e-32 TTCTCCTCCG CGAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCAC ATTTGTGCTC
NC_022093.1                1500  1.05e-31 CTGGGCCTCC CAAGGGGGGAGAAGTCGTAACAAGGTGGCCGTAGGGGAACCTGCGGCCGGATCACCTCCT TTCGATCCGG
NC_020892.1                1455  1.11e-31 TGAGATTCAG CAAGGGAGGTTAAGTCGTAACAAGGTATCTGTAGGGGAACCTGCAGATGGATCACCTCCT ACGCAGGGTT
NC_005877.1                1471  5.24e-31 CTGATGTCAG TGAGGAGGGTTAAGTCATAACAAGGTATCTGTAGGGGAACCTGCAGATGGATCACCTCCT ACGAAAGGCG
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_017527.1                       2.7e-36  1464_[+2]_50
NC_015416.1                       2.7e-36  1457_[+2]_50
NC_014507.1                       2.7e-36  1457_[+2]_50
NC_014253.1                       2.7e-36  1466_[+2]_50
NC_009712.1                       2.7e-36  1456_[+2]_49
NC_007955.1                       2.7e-36  1466_[+2]_49
NC_007796.1                       2.7e-36  1455_[+2]_50
NC_007355.1                       2.7e-36  1468_[+2]_49
NC_015954.1                       1.6e-35  1463_[+2]_49
NC_014729.1                       1.6e-35  1459_[+2]_59
NC_013202.1                       1.6e-35  1463_[+2]_49
NC_008212.2                       1.6e-35  1462_[+2]_50
NC_007426.1                       1.6e-35  1456_[+2]_49
NC_002607.1                       8.1e-35  1462_[+2]_50
NC_008942.1                       1.8e-34  1454_[+2]_50
NC_013849.1                       2.3e-34  1500_[+2]_50
NC_012028.1                         3e-34  1459_[+2]_50
NC_013201.1                         9e-34  1462_[+2]_49
NC_021313.1                       9.8e-34  1461_[+2]_49
NC_017461.1                       1.3e-33  1492_[+2]_49
NC_007681.1                       1.6e-33  1477_[+2]_52
NC_013926.1                       1.8e-33  1465_[+2]_47
NC_000909.2                       1.8e-33  1468_[+2]_49
NC_009515.2                       4.4e-33  1466_[+2]_49
NC_014205.1                       4.8e-33  1501_[+2]_49
NC_015216.1                       8.5e-33  1474_[+2]_50
NC_021592.1                       1.9e-32  1460_[+2]_50
NC_002578.1                       1.9e-32  1462_[+2]_48
NC_015518.1                       4.7e-32  1489_[+2]_49
NC_009440.1                       4.7e-32  1487_[+2]_59
NC_022093.1                       1.1e-31  1499_[+2]_53
NC_020892.1                       1.1e-31  1454_[+2]_50
NC_005877.1                       5.2e-31  1470_[+2]_38
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 2 width=60 seqs=33
NC_017527.1              ( 1465) CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_015416.1              ( 1458) CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_014507.1              ( 1458) CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_014253.1              ( 1467) CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_009712.1              ( 1457) CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_007955.1              ( 1467) CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_007796.1              ( 1456) CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_007355.1              ( 1469) CAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_015954.1              ( 1464) CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_014729.1              ( 1460) CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_013202.1              ( 1464) CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_008212.2              ( 1463) CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_007426.1              ( 1457) CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_002607.1              ( 1463) CAAGGGGGATTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_008942.1              ( 1455) TGAGGAGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_013849.1              ( 1501) CGAGGGGGGCTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT  1 
NC_012028.1              ( 1460) CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCA  1 
NC_013201.1              ( 1463) CAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGAGGAATCTGCGGCTGGATCACCTCCT  1 
NC_021313.1              ( 1462) CAAGGGGGATTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCA  1 
NC_017461.1              ( 1493) CGAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT  1 
NC_007681.1              ( 1478) TGAGGAGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT  1 
NC_013926.1              ( 1466) CGAGGAGGGTTAAGTCGTAACAAGGTATCCGTAGGGGAACCTGCGGATGGATCACCTCCT  1 
NC_000909.2              ( 1469) CGAGGGGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT  1 
NC_009515.2              ( 1467) TAAGGAGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT  1 
NC_014205.1              ( 1502) CAAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCC  1 
NC_015216.1              ( 1475) TGAGGAGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT  1 
NC_021592.1              ( 1461) TGAGGAGGGTTAAGTCGTAACAAGGTATCCGTAGGGGAACCTGCGGATGGATCACCTCCA  1 
NC_002578.1              ( 1463) TGAGGAGGGTTAAGTCGTAACAAGGTATCCGTAGGGGAACCTGCGGATGGATCACCTCCA  1 
NC_015518.1              ( 1490) CGAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCAC  1 
NC_009440.1              ( 1488) CGAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCAC  1 
NC_022093.1              ( 1500) CAAGGGGGGAGAAGTCGTAACAAGGTGGCCGTAGGGGAACCTGCGGCCGGATCACCTCCT  1 
NC_020892.1              ( 1455) CAAGGGAGGTTAAGTCGTAACAAGGTATCTGTAGGGGAACCTGCAGATGGATCACCTCCT  1 
NC_005877.1              ( 1471) TGAGGAGGGTTAAGTCATAACAAGGTATCTGTAGGGGAACCTGCAGATGGATCACCTCCT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 11.3348 E= 5.9e-827 
 -1169    163  -1169     14 
   143  -1169     19  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
     4  -1169    125  -1169 
  -296  -1169    161  -1169 
 -1169  -1169    165  -1169 
  -196    -26    119  -1169 
   -64   -107  -1169    192 
 -1169  -1169    -22    192 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
  -296  -1169    161  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   204  -1169   -339  -1169 
 -1169  -1169    142    -34 
 -1169    198  -1169  -1169 
 -1169    189  -1169   -166 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
  -296  -1169    161  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169     74  -1169    158 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
  -196  -1169    156  -1169 
 -1169  -1169    165  -1169 
   -64    174  -1169  -1169 
 -1169   -306  -1169    234 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
  -196    189  -1169  -1169 
   -96   -148  -1169    204 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 5.9e-827 
 0.000000  0.787879  0.000000  0.212121 
 0.636364  0.000000  0.363636  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.242424  0.000000  0.757576  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.060606  0.212121  0.727273  0.000000 
 0.151515  0.121212  0.000000  0.727273 
 0.000000  0.000000  0.272727  0.727273 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.969697  0.000000  0.030303  0.000000 
 0.000000  0.000000  0.848485  0.151515 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.939394  0.000000  0.060606 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.424242  0.000000  0.575758 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.151515  0.848485  0.000000  0.000000 
 0.000000  0.030303  0.000000  0.969697 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.060606  0.939394  0.000000  0.000000 
 0.121212  0.090909  0.000000  0.787879 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 regular expression
--------------------------------------------------------------------------------
[CT][AG]AGG[GA]GG[GC]T[TG]AAGTCGTAACAAGGTAGCCGTAGGGGAA[TC]CTGCGGCTGGATCACCTCCT
--------------------------------------------------------------------------------




Time 42.78 secs.

********************************************************************************


********************************************************************************
MOTIF  3 MEME	width =  60  sites =  33  llr = 2372  E-value = 1.5e-793
********************************************************************************
--------------------------------------------------------------------------------
	Motif 3 Description
--------------------------------------------------------------------------------
Simplified        A  :a::a9::::2::::a54a241:1:::::aa:9::::::::::::::::a:a:a::::::
pos.-specific     C  ::::::2a:9121:a:25:1528:a::1:::::8:2aaa::a:aa:::a:a:a:aa:aaa
probability       G  ::a::1::a:825:::2::41719:aa:a:::1:a:::::a::::::a::::::::a:::
matrix            T  a::a::8::1:64a::21:4::2::::9:::a:2:8:::a::a::aa:::::::::::::

         bits    2.4 *  *                                   *  *  **             
                 2.1 ** **        * *  *        * ***       *  *  **  * * *      
                 1.9 ** **  *     ***  *     *  * ***    **** ****** ******** ***
                 1.7 **********   ***  *     ** ****** **************************
Relative         1.4 **********   ***  *    *************************************
Entropy          1.2 **********   ***  *    *************************************
(103.7 bits)     1.0 **********   ***  *   **************************************
                 0.7 ************ ***  * * **************************************
                 0.5 **************** ** ****************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           TAGTAATCGCGTGTCAACATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC
consensus                        T   GA GA                                       
sequence                                                                         
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_014253.1                1337  1.07e-36 CTGGAATCCG TAGTAATCGCGTTTCAACATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_007955.1                1340  1.07e-36 CTGGAATCCG TAGTAATCGCGTTTCAACATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_007796.1                1332  1.58e-35 CTGGAATCCG TAGTAATCGCGTTTCAACATAGCGCGGTGAATATGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_009515.2                1341  2.24e-35 CTGGAATGCG TAGTAATCGCGTGTCACAATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCACGCCAC
NC_007355.1                1342  2.66e-35 CTGGAATCCG TAGTAATCGCGTTTCAATATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_002607.1                1342  3.06e-35 CTGGATTCGG TAGTAATCGCGTGTCAGCAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAATCAC
NC_012028.1                1340  3.78e-35 CTGGATTCGG TAGTAATCGCGTGTCATAAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAAGCAC
NC_013202.1                1343  5.23e-35 CTGGATTCGG TAGTAATCGCGTGTCAGAAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAAGCAC
NC_013201.1                1342  5.23e-35 CTGGATTCGG TAGTAATCGCGTGTCAGAAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAAGCAC
NC_007426.1                1337  5.23e-35 CTGGATTCGG TAGTAATCGCGTGTCAGAAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAAGCAC
NC_017527.1                1339  1.17e-34 CTGGAATCCG TAGTAATCGCGTTTCAACAGAACGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_015416.1                1332  1.17e-34 CTGGAATCCG TAGTAATCGCGTTTCAACAGAACGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_008942.1                1330  1.78e-34 CTGGAATCTG TAGTAATCGCGTTTCACTATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAT
NC_014507.1                1333  2.74e-34 CTGGAATCCG TAGTAATCGCGTTTCAAAATAGCGCGGTGAATGCGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_015216.1                1346  4.15e-34 CTGGAATGCG TAGTAATCGCGTGTCATAACCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCACGCCAC
NC_022093.1                1370  6.13e-34 CTGGAATCCC TAGTAACCGCGTGTCATCAACGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCGCTCCAC
NC_014205.1                1363  1.42e-33 GTGGAATCCC TAGTAACCGCGCGTCATCATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCGCTCCAC
NC_014729.1                1339  2.23e-33 CTGGATTCGG TAGTAATCGCATTTCACAAGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAAGCAC
NC_009440.1                1357  5.82e-33 GAGGAATCCC TAGTAACCGCGGGTCAACAACCCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCGCTCCAC
NC_007681.1                1349  1.05e-32 CTGGAATGCG TAGTAATCGCATGTCACAACCGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCACACCAC
NC_013849.1                1375  1.27e-32 CTGGAATCCG TAGTAATCGCGCCTCAAAATGGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAGCCAC
NC_009712.1                1331  1.53e-32 CTGGAATCCG TAGTAATCGTGTTTCAAAATAGCACGGTGAATATGTCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_017461.1                1364  2.01e-32 GAGGAATCCC TAGTAACCGCACGTCATCATCGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCGCTCCAC
NC_015518.1                1359  2.19e-32 GAGGAATCCC TAGTAACCGCACGTCAACAACGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCGCTCCAC
NC_021313.1                1342  1.30e-31 CTGGATTCGG TAGTAATCGCCGTTCAGAAGACGGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAATCAC
NC_000909.2                1342  2.30e-31 CCGGAATCCG TAGTAATCGCGCCTCACCATGGCGCGGTGAATGCGTCCCTGCTCCTTGCACACACCGCCC GTCACGCCAC
NC_005877.1                1344  2.83e-31 CTGGATTCCG TAGTAATCGCGGGTCAACAACCCGCGGTGAATATGCCCCTGCTCCTTGCACACACCGCCT GTCAAACCAT
NC_013926.1                1340  3.96e-31 CTGGATTCCG TAGTAATCGCGGGTCAACATCCCGCGGTGAATGCGCCCCTGCTCTTTGCACACACCGCCC GTCAAACCAT
NC_021592.1                1334  4.23e-31 CTGGATTCCG TAGTAATCGCGGGTCAACAACCCGCGGTGAACATGCCCCTGCTCCTTGCACACACCGCCC GTCAAACCAT
NC_020892.1                1330  1.29e-30 CTGGATTCCG TAGTAATCGCGAATCAACAACTCGCGGTGAATATGCCCCTGCTCCTTGCACACACCGCCC GTCAAACCAC
NC_002578.1                1337  3.22e-30 GTGGATTCCG TAGTAATCGTAGGTCAACAGCCTACGGTGAATATGCCCCTGCTCCTTGCACACACCGCCC GTCAAACCAT
NC_015954.1                1344  4.57e-29 CTGGATTCGG TAGTAGTCGCCTTCCAGGAGAGGGCGGCGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAAGCAC
NC_008212.2                1343  9.53e-29 CTGGATTCGG TAGTAGCCGCCTTTCAGTAGAAGGCGACGAATACGTCCCTGCTCCTTGCACACACCGCCC GTCAAAGCAC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_014253.1                       1.1e-36  1336_[+3]_180
NC_007955.1                       1.1e-36  1339_[+3]_176
NC_007796.1                       1.6e-35  1331_[+3]_174
NC_009515.2                       2.2e-35  1340_[+3]_175
NC_007355.1                       2.7e-35  1341_[+3]_176
NC_002607.1                       3.1e-35  1341_[+3]_171
NC_012028.1                       3.8e-35  1339_[+3]_170
NC_013202.1                       5.2e-35  1342_[+3]_170
NC_013201.1                       5.2e-35  1341_[+3]_170
NC_007426.1                       5.2e-35  1336_[+3]_169
NC_017527.1                       1.2e-34  1338_[+3]_176
NC_015416.1                       1.2e-34  1331_[+3]_176
NC_008942.1                       1.8e-34  1329_[+3]_175
NC_014507.1                       2.7e-34  1332_[+3]_175
NC_015216.1                       4.1e-34  1345_[+3]_179
NC_022093.1                       6.1e-34  1369_[+3]_183
NC_014205.1                       1.4e-33  1362_[+3]_188
NC_014729.1                       2.2e-33  1338_[+3]_180
NC_009440.1                       5.8e-33  1356_[+3]_190
NC_007681.1                         1e-32  1348_[+3]_181
NC_013849.1                       1.3e-32  1374_[+3]_176
NC_009712.1                       1.5e-32  1330_[+3]_175
NC_017461.1                         2e-32  1363_[+3]_178
NC_015518.1                       2.2e-32  1358_[+3]_180
NC_021313.1                       1.3e-31  1341_[+3]_169
NC_000909.2                       2.3e-31  1341_[+3]_176
NC_005877.1                       2.8e-31  1343_[+3]_165
NC_013926.1                         4e-31  1339_[+3]_173
NC_021592.1                       4.2e-31  1333_[+3]_177
NC_020892.1                       1.3e-30  1329_[+3]_175
NC_002578.1                       3.2e-30  1336_[+3]_174
NC_015954.1                       4.6e-29  1343_[+3]_169
NC_008212.2                       9.5e-29  1342_[+3]_170
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 3 width=60 seqs=33
NC_014253.1              ( 1337) TAGTAATCGCGTTTCAACATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_007955.1              ( 1340) TAGTAATCGCGTTTCAACATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_007796.1              ( 1332) TAGTAATCGCGTTTCAACATAGCGCGGTGAATATGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_009515.2              ( 1341) TAGTAATCGCGTGTCACAATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_007355.1              ( 1342) TAGTAATCGCGTTTCAATATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_002607.1              ( 1342) TAGTAATCGCGTGTCAGCAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_012028.1              ( 1340) TAGTAATCGCGTGTCATAAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_013202.1              ( 1343) TAGTAATCGCGTGTCAGAAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_013201.1              ( 1342) TAGTAATCGCGTGTCAGAAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_007426.1              ( 1337) TAGTAATCGCGTGTCAGAAGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_017527.1              ( 1339) TAGTAATCGCGTTTCAACAGAACGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_015416.1              ( 1332) TAGTAATCGCGTTTCAACAGAACGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_008942.1              ( 1330) TAGTAATCGCGTTTCACTATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_014507.1              ( 1333) TAGTAATCGCGTTTCAAAATAGCGCGGTGAATGCGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_015216.1              ( 1346) TAGTAATCGCGTGTCATAACCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_022093.1              ( 1370) TAGTAACCGCGTGTCATCAACGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_014205.1              ( 1363) TAGTAACCGCGCGTCATCATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_014729.1              ( 1339) TAGTAATCGCATTTCACAAGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_009440.1              ( 1357) TAGTAACCGCGGGTCAACAACCCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_007681.1              ( 1349) TAGTAATCGCATGTCACAACCGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_013849.1              ( 1375) TAGTAATCGCGCCTCAAAATGGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_009712.1              ( 1331) TAGTAATCGTGTTTCAAAATAGCACGGTGAATATGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_017461.1              ( 1364) TAGTAACCGCACGTCATCATCGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_015518.1              ( 1359) TAGTAACCGCACGTCAACAACGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_021313.1              ( 1342) TAGTAATCGCCGTTCAGAAGACGGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_000909.2              ( 1342) TAGTAATCGCGCCTCACCATGGCGCGGTGAATGCGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_005877.1              ( 1344) TAGTAATCGCGGGTCAACAACCCGCGGTGAATATGCCCCTGCTCCTTGCACACACCGCCT  1 
NC_013926.1              ( 1340) TAGTAATCGCGGGTCAACATCCCGCGGTGAATGCGCCCCTGCTCTTTGCACACACCGCCC  1 
NC_021592.1              ( 1334) TAGTAATCGCGGGTCAACAACCCGCGGTGAACATGCCCCTGCTCCTTGCACACACCGCCC  1 
NC_020892.1              ( 1330) TAGTAATCGCGAATCAACAACTCGCGGTGAATATGCCCCTGCTCCTTGCACACACCGCCC  1 
NC_002578.1              ( 1337) TAGTAATCGTAGGTCAACAGCCTACGGTGAATATGCCCCTGCTCCTTGCACACACCGCCC  1 
NC_015954.1              ( 1344) TAGTAGTCGCCTTCCAGGAGAGGGCGGCGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
NC_008212.2              ( 1343) TAGTAGCCGCCTTTCAGTAGAAGGCGACGAATACGTCCCTGCTCCTTGCACACACCGCCC  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 1.5e-793 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
   199  -1169   -239  -1169 
 -1169    -48  -1169    209 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169    189  -1169   -166 
   -64   -148    125  -1169 
  -296    -75    -81    173 
  -296   -207     70    104 
 -1169   -306  -1169    234 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
   104    -75    -58    -34 
    62    102   -339   -108 
   208  -1169  -1169  -1169 
   -38   -207     19    104 
    74    110   -239  -1169 
  -138    -48    113   -266 
 -1169    158   -181    -34 
  -196  -1169    156  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
  -296  -1169    161  -1169 
 -1169   -207  -1169    229 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169   -306  -1169    234 
   195  -1169   -181  -1169 
 -1169    169  -1169     -8 
 -1169  -1169    165  -1169 
 -1169    -75  -1169    214 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
 -1169    193  -1169   -266 
 -1169  -1169  -1169    238 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    193  -1169   -266 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 1.5e-793 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.939394  0.000000  0.060606  0.000000 
 0.000000  0.181818  0.000000  0.818182 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.939394  0.000000  0.060606 
 0.151515  0.090909  0.757576  0.000000 
 0.030303  0.151515  0.181818  0.636364 
 0.030303  0.060606  0.515152  0.393939 
 0.000000  0.030303  0.000000  0.969697 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.484848  0.151515  0.212121  0.151515 
 0.363636  0.515152  0.030303  0.090909 
 1.000000  0.000000  0.000000  0.000000 
 0.181818  0.060606  0.363636  0.393939 
 0.393939  0.545455  0.060606  0.000000 
 0.090909  0.181818  0.696970  0.030303 
 0.000000  0.757576  0.090909  0.151515 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.060606  0.000000  0.939394 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.030303  0.000000  0.969697 
 0.909091  0.000000  0.090909  0.000000 
 0.000000  0.818182  0.000000  0.181818 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.151515  0.000000  0.848485 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.969697  0.000000  0.030303 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 regular expression
--------------------------------------------------------------------------------
TAGTAATCGCGT[GT]TCA[AG][CA]A[TG][CA]GCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCC
--------------------------------------------------------------------------------




Time 62.77 secs.

********************************************************************************


********************************************************************************
MOTIF  4 MEME	width =  60  sites =  33  llr = 2355  E-value = 9.9e-783
********************************************************************************
--------------------------------------------------------------------------------
	Motif 4 Description
--------------------------------------------------------------------------------
Simplified        A  :::a:::::1:::::a::::::8::::2941:3:::1:::9a:::8:2:aa::a::1a:a
pos.-specific     C  ::a::::aa:4a:2a::7:a:::96::::::8::8a:2::::::81::8::a:::a::::
probability       G  :a:::aa::9::a:::a:::a:2::a:8169:7:::18::::a:2:a8::::a:a:9:a:
matrix            T  a:::a:::::6::8:::3a::a:14:a::::2:a2:8:aa1::a:1::2:::::::::::

         bits    2.4 *                 *  *    *      *    **   *                
                 2.1 *  **             *  *    *      *    ** * *     **  *   * *
                 1.9 * ***  **  *  **  ** *    *      * *  ** * *     *** * * * *
                 1.7 *********  ****** **** * **      * *  ******     ***** * ***
Relative         1.4 ********** ****** ****** ** * ** ***  ******* *  ***********
Entropy          1.2 ***************************** ** ************ **************
(103.0 bits)     1.0 ************************************************************
                 0.7 ************************************************************
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           TGCATGGCCGTCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA
consensus                      C      T      T    A  A               T           
sequence                                                                         
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_021313.1                1041  2.94e-35 TGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA TCCGTATTCC
NC_015954.1                1042  2.94e-35 AGAGAGGTGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA TCCGCACTCT
NC_015216.1                1043  2.94e-35 TGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCACGCCCT
NC_014729.1                1038  2.94e-35 AGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCACACATC
NC_013202.1                1041  2.94e-35 TGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCGCACTCC
NC_012028.1                1039  2.94e-35 AGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCGCATCCT
NC_009515.2                1038  2.94e-35 TGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCACGCTCT
NC_008212.2                1043  2.94e-35 AGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCGCACCCC
NC_007681.1                1048  2.94e-35 TGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACTGTGAAGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCACGCCCT
NC_007426.1                1036  2.94e-35 TGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCGCACCTC
NC_002607.1                1040  2.94e-35 TGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA CCCGCACTCC
NC_017527.1                1038  3.37e-35 TGAGAGGTGG TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA CCCACGTCCA
NC_015416.1                1031  3.37e-35 TGAGAGGTGG TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA CCCACGCCCA
NC_014253.1                1036  3.37e-35 TGAGAGGAGG TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA CCCGTGCCCA
NC_009712.1                1030  3.37e-35 TGAGAGGAGG TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA CCCACGCCAA
NC_008942.1                1029  3.37e-35 TGAGAGGAGG TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA CCCACGCCGA
NC_007955.1                1039  3.37e-35 TGAGAGGAGG TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA CCCGTGCCCA
NC_000909.2                1042  3.95e-35 CGAGAGGTGG TGCATGGCCGTCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGTAACGAGCGAGA CCCGTGCCCC
NC_013849.1                1072  9.84e-35 TGAGAGGTGG TGCATGGCCGCCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA CCCGCGCCCC
NC_013201.1                1041  2.59e-34 TGAGAGGAGG TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCATCCTGTTAAGTCAGGTAACGAGCGAGA CCCGCATCCG
NC_007355.1                1041  5.22e-34 TGAGAGGAGG TGCATGGCCGTCGCCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA CCCGTGCCCA
NC_014507.1                1032  1.33e-33 TGAGAGGAGG TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTTAGTCAGGCAACGAGCGAGA CCCACGCCAA
NC_007796.1                1031  1.33e-33 TGAGAGGAGG TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTTAGTCAGGCAACGAGCGAGA CCCACGCGAG
NC_014205.1                1062  4.17e-31 TGAGAGGAGG TGCATGGCCGTCGCCAGCTCGTGCCGTGAGGTGTCCGGTTAAGTCCGGCAACGAGCGAGA CCCCCGCCCC
NC_022093.1                1070  2.65e-30 TGAGAGGAGG TGCATGGCCGTCGCCGGCTCGTGCCGTGAGGTGTCCTGTTAAGTCAGGGAACGAGCGAGA CCCCCGCCCC
NC_015518.1                1058  8.43e-30 GGAGAGGAGG TGCATGGCCGTCGCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTCCGGCAACGAGCGAGA CCCCCACCCT
NC_009440.1                1057  8.43e-30 GGAGAGGAGG TGCATGGCCGTCGCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTCCGGCAACGAGCGAGA CCCCCACTTC
NC_021592.1                1035  8.90e-30 GGAGAGGTGG TGCATGGCCGTCGTCAGCTCGTACCGTAGGGCGTTCACTTAAGTGTGATAACGAGCGAGA CCCACATCTT
NC_005877.1                1045  8.90e-30 GGAGAGGTGG TGCATGGCCGTCGTCAGCTCGTACCGTAGGGCGTTCACTTAAGTGTGATAACGAGCGAGA CCCCCATCTC
NC_020892.1                1031  3.41e-29 GGAGAAGTGG TGCATGGCCATCGTCAGTTCGTACTGTAAAGCGTTCTCTTAAGTGAGATAACGAACAAGA CCCTCACTTA
NC_013926.1                1041  3.41e-29 GGAGAGGTGG TGCATGGCCATCGTCAGCTCGTACCGTAGGGCGTTCACTTAAGTGTGATAACGAGCGAGA CCCCCGTCCC
NC_002578.1                1038  3.41e-29 GGAGAGGTGG TGCATGGCCGTCGTCAGCTCGTACCGTAGGGCGTTCACTTAAGTGTGATAACGAGCAAGA CCCCCATCTC
NC_017461.1                1063  1.49e-28 TGAGAGGAGG TGCACGGCCGTCGCCAGCTCGTGCCGTGAGGTGTCTGGTTAAGTCCAGCAACGAGCGAGA CCCCTGCCCC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_021313.1                       2.9e-35  1040_[+4]_470
NC_015954.1                       2.9e-35  1041_[+4]_471
NC_015216.1                       2.9e-35  1042_[+4]_482
NC_014729.1                       2.9e-35  1037_[+4]_481
NC_013202.1                       2.9e-35  1040_[+4]_472
NC_012028.1                       2.9e-35  1038_[+4]_471
NC_009515.2                       2.9e-35  1037_[+4]_478
NC_008212.2                       2.9e-35  1042_[+4]_470
NC_007681.1                       2.9e-35  1047_[+4]_482
NC_007426.1                       2.9e-35  1035_[+4]_470
NC_002607.1                       2.9e-35  1039_[+4]_473
NC_017527.1                       3.4e-35  1037_[+4]_477
NC_015416.1                       3.4e-35  1030_[+4]_477
NC_014253.1                       3.4e-35  1035_[+4]_481
NC_009712.1                       3.4e-35  1029_[+4]_476
NC_008942.1                       3.4e-35  1028_[+4]_476
NC_007955.1                       3.4e-35  1038_[+4]_477
NC_000909.2                         4e-35  1041_[+4]_476
NC_013849.1                       9.8e-35  1071_[+4]_479
NC_013201.1                       2.6e-34  1040_[+4]_471
NC_007355.1                       5.2e-34  1040_[+4]_477
NC_014507.1                       1.3e-33  1031_[+4]_476
NC_007796.1                       1.3e-33  1030_[+4]_475
NC_014205.1                       4.2e-31  1061_[+4]_489
NC_022093.1                       2.7e-30  1069_[+4]_483
NC_015518.1                       8.4e-30  1057_[+4]_481
NC_009440.1                       8.4e-30  1056_[+4]_490
NC_021592.1                       8.9e-30  1034_[+4]_476
NC_005877.1                       8.9e-30  1044_[+4]_464
NC_020892.1                       3.4e-29  1030_[+4]_474
NC_013926.1                       3.4e-29  1040_[+4]_472
NC_002578.1                       3.4e-29  1037_[+4]_473
NC_017461.1                       1.5e-28  1062_[+4]_479
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 4 width=60 seqs=33
NC_021313.1              ( 1041) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_015954.1              ( 1042) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_015216.1              ( 1043) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_014729.1              ( 1038) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_013202.1              ( 1041) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_012028.1              ( 1039) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_009515.2              ( 1038) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_008212.2              ( 1043) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_007681.1              ( 1048) TGCATGGCCGCCGTCAGCTCGTACTGTGAAGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_007426.1              ( 1036) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_002607.1              ( 1040) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_017527.1              ( 1038) TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_015416.1              ( 1031) TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_014253.1              ( 1036) TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_009712.1              ( 1030) TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_008942.1              ( 1029) TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_007955.1              ( 1039) TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_000909.2              ( 1042) TGCATGGCCGTCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGTAACGAGCGAGA  1 
NC_013849.1              ( 1072) TGCATGGCCGCCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_013201.1              ( 1041) TGCATGGCCGCCGTCAGCTCGTACCGTGAGGCATCCTGTTAAGTCAGGTAACGAGCGAGA  1 
NC_007355.1              ( 1041) TGCATGGCCGTCGCCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGA  1 
NC_014507.1              ( 1032) TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTTAGTCAGGCAACGAGCGAGA  1 
NC_007796.1              ( 1031) TGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTTAGTCAGGCAACGAGCGAGA  1 
NC_014205.1              ( 1062) TGCATGGCCGTCGCCAGCTCGTGCCGTGAGGTGTCCGGTTAAGTCCGGCAACGAGCGAGA  1 
NC_022093.1              ( 1070) TGCATGGCCGTCGCCGGCTCGTGCCGTGAGGTGTCCTGTTAAGTCAGGGAACGAGCGAGA  1 
NC_015518.1              ( 1058) TGCATGGCCGTCGCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTCCGGCAACGAGCGAGA  1 
NC_009440.1              ( 1057) TGCATGGCCGTCGCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTCCGGCAACGAGCGAGA  1 
NC_021592.1              ( 1035) TGCATGGCCGTCGTCAGCTCGTACCGTAGGGCGTTCACTTAAGTGTGATAACGAGCGAGA  1 
NC_005877.1              ( 1045) TGCATGGCCGTCGTCAGCTCGTACCGTAGGGCGTTCACTTAAGTGTGATAACGAGCGAGA  1 
NC_020892.1              ( 1031) TGCATGGCCATCGTCAGTTCGTACTGTAAAGCGTTCTCTTAAGTGAGATAACGAACAAGA  1 
NC_013926.1              ( 1041) TGCATGGCCATCGTCAGCTCGTACCGTAGGGCGTTCACTTAAGTGTGATAACGAGCGAGA  1 
NC_002578.1              ( 1038) TGCATGGCCGTCGTCAGCTCGTACCGTAGGGCGTTCACTTAAGTGTGATAACGAGCAAGA  1 
NC_017461.1              ( 1063) TGCACGGCCGTCGCCAGCTCGTGCCGTGAGGTGTCTGGTTAAGTCCAGCAACGAGCGAGA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 11.9126 E= 9.9e-783 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169   -306  -1169    234 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
  -196  -1169    156  -1169 
 -1169     63  -1169    166 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169    -48  -1169    209 
 -1169    198  -1169  -1169 
   204  -1169   -339  -1169 
 -1169  -1169    165  -1169 
 -1169    139  -1169     80 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   185  -1169   -107  -1169 
 -1169    189  -1169   -166 
 -1169    118  -1169    114 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   -64  -1169    142  -1169 
   190  -1169   -139  -1169 
    85  -1169     86  -1169 
  -196  -1169    156  -1169 
 -1169    174  -1169    -34 
    50  -1169    107  -1169 
 -1169  -1169  -1169    238 
 -1169    174  -1169    -34 
 -1169    193  -1169   -266 
   -96  -1169   -139    198 
 -1169    -75    142  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169  -1169    238 
   199  -1169  -1169   -166 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
 -1169    174   -107  -1169 
   168   -107  -1169    -66 
  -296  -1169    161  -1169 
   -64  -1169    142  -1169 
 -1169    158   -339     14 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
  -296  -1169    161  -1169 
 -1169    198  -1169  -1169 
  -196  -1169    156  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 9.9e-783 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.030303  0.000000  0.969697 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  0.393939  0.000000  0.606061 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.181818  0.000000  0.818182 
 0.000000  1.000000  0.000000  0.000000 
 0.969697  0.000000  0.030303  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.666667  0.000000  0.333333 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.848485  0.000000  0.151515  0.000000 
 0.000000  0.939394  0.000000  0.060606 
 0.000000  0.575758  0.000000  0.424242 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.151515  0.000000  0.848485  0.000000 
 0.878788  0.000000  0.121212  0.000000 
 0.424242  0.000000  0.575758  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  0.848485  0.000000  0.151515 
 0.333333  0.000000  0.666667  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.848485  0.000000  0.151515 
 0.000000  0.969697  0.000000  0.030303 
 0.121212  0.000000  0.121212  0.757576 
 0.000000  0.151515  0.848485  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.939394  0.000000  0.000000  0.060606 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.848485  0.151515  0.000000 
 0.757576  0.121212  0.000000  0.121212 
 0.030303  0.000000  0.969697  0.000000 
 0.151515  0.000000  0.848485  0.000000 
 0.000000  0.757576  0.030303  0.212121 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 4 regular expression
--------------------------------------------------------------------------------
TGCATGGCCG[TC]CGTCAG[CT]TCGTAC[CT]GTGA[GA]GC[GA]TCCTGTTAAGTCAGG[CT]AACGAGCGAGA
--------------------------------------------------------------------------------




Time 81.56 secs.

********************************************************************************


********************************************************************************
MOTIF  5 MEME	width =  60  sites =  33  llr = 2321  E-value = 2.8e-767
********************************************************************************
--------------------------------------------------------------------------------
	Motif 5 Description
--------------------------------------------------------------------------------
Simplified        A  :1a::29::aa8:::61:::52:4aa::::a::a:a:a:::::::a:::::6:::::aaa
pos.-specific     C  :::::::a:::::a4:::::5:a:::98::::::::::aaa1::::::a94::a4:::::
probability       G  :9:a981:a::2a::49aa6:6:6:::1aa::::a::::::89a::a::::4a::a::::
matrix            T  a:::1:::::::::6::::4:2:::::::::aa:::a:::::::a::a:16:::6:a:::

         bits    2.4                                **   *       *  *        *   
                 2.1 * *      **             **    **** ***      ** *        ****
                 1.9 * *    * **  *        * **    **** ******   ** **       ****
                 1.7 * **   ****  *   **   * **  *************  *******  ** *****
Relative         1.4 * *** ***** **  ***   * *** *************  *******  ** *****
Entropy          1.2 ***** ********* ***   * ***************** ********* ********
(101.5 bits)     1.0 *************** ***** * ************************************
                 0.7 ********************* **************************************
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           TGAGGGACGAAAGCTAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA
consensus                 A     G  CG   TAT A                          CG  C     
sequence                                                                         
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_009515.2                 745  6.12e-36 ATTCTGACGG TGAGGGACGAAAGCTAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA CGATGCGGAC
NC_002607.1                 745  2.43e-35 GATCCGACAG TGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA CGATGTCCGC
NC_014729.1                 743  1.59e-34 GATCCGACAG TGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAA CAATGTTCAC
NC_007426.1                 741  1.59e-34 GATCCGACAG TGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAA CGATGCTCGC
NC_013202.1                 746  3.33e-34 GACCCGACGG TGAGGAACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA CGATGCTCGC
NC_007796.1                 738  5.10e-34 GGTCCGACAG TGAGGGACGAAAGCTGGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAA CGATGCGCGT
NC_015954.1                 746  6.61e-34 GATCCGACAG TGAGGGACGAAAGCTGGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAA CGATGTTCGC
NC_002578.1                 745  9.49e-34 GATCCGACGG TGAGGGACGAAGGCTAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA CGCTGCCCAC
NC_009712.1                 737  2.52e-33 GCTCCGACAG TGAGGAACGAAAGCTGGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAA CGATGCGCGT
NC_013201.1                 747  2.86e-33 GACCCGACAG TGAGGGACGAAAGCCAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA CGATGCTCGT
NC_012028.1                 745  2.86e-33 GATCCGACAG TGAGGGACGAAAGCCAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA CAATGTCTGT
NC_014253.1                 743  3.47e-33 GGTCCGACGG TGAGGGACGAAAGCTGGGGGCACGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAA CGATGCTCGC
NC_007955.1                 746  3.47e-33 GGTCCGACGG TGAGGGACGAAAGCTGGGGGCACGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAA CGATGTTCGC
NC_007355.1                 748  3.47e-33 GGTTCGACGG TGAGGGACGAAAGCTGGGGGCACGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAA CGATGCTCGC
NC_005877.1                 752  3.47e-33 GATCCGACGG TGAGGAACGAAGGCTAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA CTCTGCCCAC
NC_014507.1                 739  4.31e-33 GCTTCGACAG TGAGGAACGAAAGCTGGGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAA CGATGCGCGT
NC_013849.1                 779  7.27e-33 GGTCCGACGG TGAGGGACGAAGGCCAGGGGAGCGAACCGGATTAGATACCCGGGTAGTCCTGGCTGTAAA CGATGCGGGC
NC_013926.1                 744  8.04e-33 GCTCCGACGG TGAGGGACGAAGGCCAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCTGGCTGTAAA CGCTGCCCGC
NC_000909.2                 749  8.04e-33 GGTCCGACGG TGAGGGACGAAGGCCAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCTGGCTGTAAA CTCTGCGGAC
NC_017527.1                 745  8.82e-33 GGTCCGACGG TAAGGGACGAAAGCTAGGGGCACGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAA CGATGCTCGC
NC_017461.1                 770  1.23e-32 CGCTCGACGG TGAGGGGCGAAAGCTGGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAA CGATGCGGAC
NC_021592.1                 742  3.59e-32 AATCTGACGG TAAGGAACGAAGGCTAGGGTAGCAAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA CATTGCCCAT
NC_008212.2                 747  5.67e-32 GATCCGACAG TGAGGGACGAAAGCCAGGGTCTCCAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA CAATGTTCGC
NC_014205.1                 769  6.24e-32 CGCCCGACGG TGAGGGGCGAAAGCCGGGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCGGCTGTAAA CGATGCGGGC
NC_015216.1                 750  6.88e-32 AACCTGACGG TGAGTAACGAAAGCCAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA CGATGTGGAC
NC_007681.1                 755  6.88e-32 ATCTTGACGG TGAGTAACGAAAGCCAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA CGATGTGGAC
NC_021313.1                 746  9.72e-32 GACCCGACGG TGAGGGACGAAAGCTAAGGTCACGAACCGGATTAGATACCCGGGTAGTCTTAGCTGTAAA CGATGTCCGC
NC_008942.1                 736  1.06e-31 GCTTCGACAG TGAGGGACGAAAGCTGGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCCAGCCGTAAA CAATGTGCGT
NC_015416.1                 738  3.29e-31 GACCTGACGG CAAGGGACGAAAGCTAGGGGCACGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAA CGATACTCGC
NC_022093.1                 777  7.85e-30 CGCCCGACGG TGAGGGACGAAAGCTGGGGGAGCAAAGGGGATTAGATACCCCCGTAGTCCCAGCTGTAAA CGATGCAGGC
NC_015518.1                 765  5.18e-29 CGCCCGACGG TGAGGGGCGAAAGCCGGGGTAGCAAAAGGGATTAGATACCCCTGTAGTCCCGGCTGTAAA CGATGCAGGC
NC_009440.1                 764  1.67e-28 CGCCCGACGG TGAGGGGCGAAAGCCGGGGTAGCAAATAGGATTAGATACCCTAGTAGTCCCGGCTGTAAA CGATGCAGGC
NC_020892.1                 738  6.13e-27 AATCCGACGG TGAGGGACGAAGCCCTAGGTCGCAAACGGGATTAGATACCCCGGTAGTCTAGGGTGTAAA CGCTGCAGAC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_009515.2                       6.1e-36  744_[+5]_771
NC_002607.1                       2.4e-35  744_[+5]_768
NC_014729.1                       1.6e-34  742_[+5]_776
NC_007426.1                       1.6e-34  740_[+5]_765
NC_013202.1                       3.3e-34  745_[+5]_767
NC_007796.1                       5.1e-34  737_[+5]_768
NC_015954.1                       6.6e-34  745_[+5]_767
NC_002578.1                       9.5e-34  744_[+5]_766
NC_009712.1                       2.5e-33  736_[+5]_769
NC_013201.1                       2.9e-33  746_[+5]_765
NC_012028.1                       2.9e-33  744_[+5]_765
NC_014253.1                       3.5e-33  742_[+5]_774
NC_007955.1                       3.5e-33  745_[+5]_770
NC_007355.1                       3.5e-33  747_[+5]_770
NC_005877.1                       3.5e-33  751_[+5]_757
NC_014507.1                       4.3e-33  738_[+5]_769
NC_013849.1                       7.3e-33  778_[+5]_772
NC_013926.1                         8e-33  743_[+5]_769
NC_000909.2                         8e-33  748_[+5]_769
NC_017527.1                       8.8e-33  744_[+5]_770
NC_017461.1                       1.2e-32  769_[+5]_772
NC_021592.1                       3.6e-32  741_[+5]_769
NC_008212.2                       5.7e-32  746_[+5]_766
NC_014205.1                       6.2e-32  768_[+5]_782
NC_015216.1                       6.9e-32  749_[+5]_775
NC_007681.1                       6.9e-32  754_[+5]_775
NC_021313.1                       9.7e-32  745_[+5]_765
NC_008942.1                       1.1e-31  735_[+5]_769
NC_015416.1                       3.3e-31  737_[+5]_770
NC_022093.1                       7.9e-30  776_[+5]_776
NC_015518.1                       5.2e-29  764_[+5]_774
NC_009440.1                       1.7e-28  763_[+5]_783
NC_020892.1                       6.1e-27  737_[+5]_767
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 5 width=60 seqs=33
NC_009515.2              (  745) TGAGGGACGAAAGCTAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA  1 
NC_002607.1              (  745) TGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA  1 
NC_014729.1              (  743) TGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAA  1 
NC_007426.1              (  741) TGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAA  1 
NC_013202.1              (  746) TGAGGAACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA  1 
NC_007796.1              (  738) TGAGGGACGAAAGCTGGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAA  1 
NC_015954.1              (  746) TGAGGGACGAAAGCTGGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAA  1 
NC_002578.1              (  745) TGAGGGACGAAGGCTAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA  1 
NC_009712.1              (  737) TGAGGAACGAAAGCTGGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAA  1 
NC_013201.1              (  747) TGAGGGACGAAAGCCAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA  1 
NC_012028.1              (  745) TGAGGGACGAAAGCCAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA  1 
NC_014253.1              (  743) TGAGGGACGAAAGCTGGGGGCACGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAA  1 
NC_007955.1              (  746) TGAGGGACGAAAGCTGGGGGCACGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAA  1 
NC_007355.1              (  748) TGAGGGACGAAAGCTGGGGGCACGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAA  1 
NC_005877.1              (  752) TGAGGAACGAAGGCTAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA  1 
NC_014507.1              (  739) TGAGGAACGAAAGCTGGGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAA  1 
NC_013849.1              (  779) TGAGGGACGAAGGCCAGGGGAGCGAACCGGATTAGATACCCGGGTAGTCCTGGCTGTAAA  1 
NC_013926.1              (  744) TGAGGGACGAAGGCCAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCTGGCTGTAAA  1 
NC_000909.2              (  749) TGAGGGACGAAGGCCAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCTGGCTGTAAA  1 
NC_017527.1              (  745) TAAGGGACGAAAGCTAGGGGCACGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAA  1 
NC_017461.1              (  770) TGAGGGGCGAAAGCTGGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAA  1 
NC_021592.1              (  742) TAAGGAACGAAGGCTAGGGTAGCAAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAA  1 
NC_008212.2              (  747) TGAGGGACGAAAGCCAGGGTCTCCAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA  1 
NC_014205.1              (  769) TGAGGGGCGAAAGCCGGGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCGGCTGTAAA  1 
NC_015216.1              (  750) TGAGTAACGAAAGCCAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA  1 
NC_007681.1              (  755) TGAGTAACGAAAGCCAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAA  1 
NC_021313.1              (  746) TGAGGGACGAAAGCTAAGGTCACGAACCGGATTAGATACCCGGGTAGTCTTAGCTGTAAA  1 
NC_008942.1              (  736) TGAGGGACGAAAGCTGGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCCAGCCGTAAA  1 
NC_015416.1              (  738) CAAGGGACGAAAGCTAGGGGCACGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAA  1 
NC_022093.1              (  777) TGAGGGACGAAAGCTGGGGGAGCAAAGGGGATTAGATACCCCCGTAGTCCCAGCTGTAAA  1 
NC_015518.1              (  765) TGAGGGGCGAAAGCCGGGGTAGCAAAAGGGATTAGATACCCCTGTAGTCCCGGCTGTAAA  1 
NC_009440.1              (  764) TGAGGGGCGAAAGCCGGGGTAGCAAATAGGATTAGATACCCTAGTAGTCCCGGCTGTAAA  1 
NC_020892.1              (  738) TGAGGGACGAAGCCCTAGGTCGCAAACGGGATTAGATACCCCGGTAGTCTAGGGTGTAAA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 2.8e-767 
 -1169   -306  -1169    234 
  -138  -1169    151  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    156   -166 
   -15  -1169    131  -1169 
   190  -1169   -139  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   174  -1169    -58  -1169 
 -1169   -306    161  -1169 
 -1169    198  -1169  -1169 
 -1169     52  -1169    173 
   129  -1169     31   -266 
  -196  -1169    156  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169     93    104 
    95    110  -1169  -1169 
   -38  -1169     86     34 
 -1169    198  -1169  -1169 
    74   -306     86  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
  -296    184   -339   -266 
  -296    174   -139  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169   -107    142   -266 
  -296   -306    151   -266 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
 -1169    189  -1169   -166 
  -296     63  -1169    158 
   143  -1169     19  -1169 
 -1169  -1169    165  -1169 
 -1169    193   -339  -1169 
 -1169     74  -1169    158 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 2.8e-767 
 0.000000  0.030303  0.000000  0.969697 
 0.090909  0.000000  0.909091  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.939394  0.060606 
 0.212121  0.000000  0.787879  0.000000 
 0.878788  0.000000  0.121212  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.787879  0.000000  0.212121  0.000000 
 0.000000  0.030303  0.969697  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.363636  0.000000  0.636364 
 0.575758  0.000000  0.393939  0.030303 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.606061  0.393939 
 0.454545  0.545455  0.000000  0.000000 
 0.181818  0.000000  0.575758  0.242424 
 0.000000  1.000000  0.000000  0.000000 
 0.393939  0.030303  0.575758  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.030303  0.909091  0.030303  0.030303 
 0.030303  0.848485  0.121212  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.121212  0.848485  0.030303 
 0.030303  0.030303  0.909091  0.030303 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.939394  0.000000  0.060606 
 0.030303  0.393939  0.000000  0.575758 
 0.636364  0.000000  0.363636  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.969697  0.030303  0.000000 
 0.000000  0.424242  0.000000  0.575758 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 5 regular expression
--------------------------------------------------------------------------------
TGAGG[GA]ACGAA[AG]GC[TC][AG]GGG[GT][CA][GT]C[GA]AACCGGATTAGATACCCGGGTAGTCC[TC][AG]GC[TC]GTAAA
--------------------------------------------------------------------------------




Time 99.67 secs.

********************************************************************************


********************************************************************************
MOTIF  6 MEME	width =  60  sites =  33  llr = 2257  E-value = 6.0e-740
********************************************************************************
--------------------------------------------------------------------------------
	Motif 6 Description
--------------------------------------------------------------------------------
Simplified        A  a1:::1:a:9:::742:::a:a:a5:731::7::::::a::::::::a::a::::::9aa
pos.-specific     C  ::aaa21:::3:::41a:::::a:3:::2aa:::aaa::a::::8:a:2a:::a:a::::
probability       G  :8:::89:a::aa2::::a:a::::934:::3aa::::::aaaa:a::8::aa:a:a:::
matrix            T  :::::::::17::137:a::::::2::47::::::::a::::::2:::::::::::::::

         bits    2.4                  *                   *                      
                 2.1 *      *         * * * *             **        *  *       * 
                 1.9 * ***  *        ** * ***     **   ******      ** **       **
                 1.7 * ***  *** **   ********     ** * ********** *** *** *******
Relative         1.4 * ***  ******   ********     ** **************** ***********
Entropy          1.2 * *** *******  ********* *   *******************************
(98.7 bits)      1.0 ***** *******  ********* ** ********************************
                 0.7 ************** ************ ********************************
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           AGCCCGGAGATGGAATCTGAGACAAGAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA
consensus                      C   C         C GT   G                            
sequence                           T            A                                
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_014507.1                 333  1.12e-34 TGGGAGCAAG AGCCCGGAGATGGAATCTGAGACACGATTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA ACTTTACAAT
NC_009712.1                 331  2.40e-34 TGGGAGCAAG AGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA ACTTTGCAAT
NC_007796.1                 332  2.40e-34 TGGGAGCAAG AGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA ACTTTACCAT
NC_013926.1                 335  3.45e-34 TGAGAGGGGT AGCCCGGAGATGGACTCTGAGACACGAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTCGCAAT
NC_014253.1                 333  5.49e-34 TGAGAGCAAG AGCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_007355.1                 338  5.49e-34 TGAGAGCAAG AGCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA ACTTTACAAT
NC_017527.1                 335  2.18e-33 TGAGAGCAAG AGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTACGGGGTGCAGCAGGCGCGAAA ACTTTACAAT
NC_015416.1                 328  2.18e-33 TGAGAGCAAG AGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTACGGGGTGCAGCAGGCGCGAAA ACTTTACAAT
NC_015954.1                 335  4.09e-33 TGAGAGCAAG AGCCCGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_014729.1                 332  4.09e-33 TGAGAGCAAG AGCCCGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_002607.1                 334  4.09e-33 TGAGAGCAAG AGCCCGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_015216.1                 340  9.18e-33 TGAGAGCAAG AGCCCGGAGATGGAACCTGAGACAAGGTTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTCCGCAAT
NC_007426.1                 330  1.77e-32 TGAGAGTGAG AGCCCGGAGACGGACTCTGAGACACGAGTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_007955.1                 337  2.04e-32 TGAGAGCAAG AGCCCAGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA TCTTTACAAT
NC_000909.2                 341  2.04e-32 TGAGAGGGGG AGCCCGGAGATGGACACTGAGACACGGGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTCCGCAAT
NC_002578.1                 335  2.32e-32 TGAAAGGGGG AGCCCGGAGATGGACTCTGAGACAACAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA ACTGTGCAAT
NC_005877.1                 343  2.92e-32 TGGGAGGGGT AGCCCGGAGATGGACTCTGAGACACTAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTGTGCAAT
NC_012028.1                 334  3.71e-32 TGAGAGTGAG AACCCGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_009515.2                 334  4.18e-32 TGAGAGCAAG AGCCCGGAGATGGAACCTGAGACAAGGTTCCAGGCCCTACGGGGTGCAGCAGGCGCGAAA CCTCCGCAAT
NC_021313.1                 335  5.76e-31 TGAGAGTCAG AGCCCGGAGACGGTATCTGAGACAAGATACCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_008212.2                 336  9.74e-31 TGAGAGCAAG AACCTGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_007681.1                 345  1.06e-30 TGAGAGCAAG AGCCCGGAGATGGAACCTGAGACAAGGTTCCAGACCCTACGGGGTGCAGCAGGCGCGAAA CCTCCGCAAT
NC_008942.1                 330  1.36e-30 TGGGAGCAAG ATCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGCAA ACTTTACAAT
NC_021592.1                 334  2.02e-30 TGGGAGGGGT AGCCCGGAGATGGACTCTGAGACATAAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAC ACTGTGCAAT
NC_020892.1                 329  2.19e-30 TGAGAGAGGG AGCCCAGAGTTGGATTCTGAGACACGAATCCAGGCCCTACGGGGCGCAGCAGTCGCGAAA ACTTCACAAT
NC_013202.1                 335  2.37e-30 TGAGAGCAAG AACCCGGAGACGGTATCTGAGACAAGATACCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_013201.1                 336  2.37e-30 TGACAGCCAG AACCCGGAGACGGTATCTGAGACAAGATACCGGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTTTACACT
NC_013849.1                 369  1.69e-29 TGAGAGTGGG AGCCCGGAGATGGCCCCTGAGACACGGGGCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA CCTCCGCAAT
NC_014205.1                 362  4.74e-29 TGAGAGCGGG AGCCCCCAGATGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGTGCACCAGGCGCGAAA CCTCCGCAAT
NC_015518.1                 360  8.40e-29 TGAGAGCGGG AGCCCCCAGTTGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGCGCACCAGGCGCGAAA CGTCCCCAAT
NC_022093.1                 370  1.38e-28 TGAGAGCGGG AGCCCCGAGATGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGTGCACCAGGGGCGAAA CTTCCGCAAT
NC_017461.1                 362  2.03e-28 TGAGAGCGGG AGCCCCCAGATGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGCGCACCAGGCGGGAAA CCTCCGCAAT
NC_009440.1                 359  6.58e-28 TGGGAGCGGG AGCCCCCAGTTGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGCGCACCAGGCGCGGAA CGTCCCCAAT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_014507.1                       1.1e-34  332_[+6]_1175
NC_009712.1                       2.4e-34  330_[+6]_1175
NC_007796.1                       2.4e-34  331_[+6]_1174
NC_013926.1                       3.5e-34  334_[+6]_1178
NC_014253.1                       5.5e-34  332_[+6]_1184
NC_007355.1                       5.5e-34  337_[+6]_1180
NC_017527.1                       2.2e-33  334_[+6]_1180
NC_015416.1                       2.2e-33  327_[+6]_1180
NC_015954.1                       4.1e-33  334_[+6]_1178
NC_014729.1                       4.1e-33  331_[+6]_1187
NC_002607.1                       4.1e-33  333_[+6]_1179
NC_015216.1                       9.2e-33  339_[+6]_1185
NC_007426.1                       1.8e-32  329_[+6]_1176
NC_007955.1                         2e-32  336_[+6]_1179
NC_000909.2                         2e-32  340_[+6]_1177
NC_002578.1                       2.3e-32  334_[+6]_1176
NC_005877.1                       2.9e-32  342_[+6]_1166
NC_012028.1                       3.7e-32  333_[+6]_1176
NC_009515.2                       4.2e-32  333_[+6]_1182
NC_021313.1                       5.8e-31  334_[+6]_1176
NC_008212.2                       9.7e-31  335_[+6]_1177
NC_007681.1                       1.1e-30  344_[+6]_1185
NC_008942.1                       1.4e-30  329_[+6]_1175
NC_021592.1                         2e-30  333_[+6]_1177
NC_020892.1                       2.2e-30  328_[+6]_1176
NC_013202.1                       2.4e-30  334_[+6]_1178
NC_013201.1                       2.4e-30  335_[+6]_1176
NC_013849.1                       1.7e-29  368_[+6]_1182
NC_014205.1                       4.7e-29  361_[+6]_1189
NC_015518.1                       8.4e-29  359_[+6]_1179
NC_022093.1                       1.4e-28  369_[+6]_1183
NC_017461.1                         2e-28  361_[+6]_1180
NC_009440.1                       6.6e-28  358_[+6]_1188
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 6 width=60 seqs=33
NC_014507.1              (  333) AGCCCGGAGATGGAATCTGAGACACGATTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_009712.1              (  331) AGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_007796.1              (  332) AGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_013926.1              (  335) AGCCCGGAGATGGACTCTGAGACACGAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_014253.1              (  333) AGCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_007355.1              (  338) AGCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_017527.1              (  335) AGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTACGGGGTGCAGCAGGCGCGAAA  1 
NC_015416.1              (  328) AGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTACGGGGTGCAGCAGGCGCGAAA  1 
NC_015954.1              (  335) AGCCCGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_014729.1              (  332) AGCCCGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_002607.1              (  334) AGCCCGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_015216.1              (  340) AGCCCGGAGATGGAACCTGAGACAAGGTTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_007426.1              (  330) AGCCCGGAGACGGACTCTGAGACACGAGTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_007955.1              (  337) AGCCCAGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_000909.2              (  341) AGCCCGGAGATGGACACTGAGACACGGGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_002578.1              (  335) AGCCCGGAGATGGACTCTGAGACAACAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_005877.1              (  343) AGCCCGGAGATGGACTCTGAGACACTAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_012028.1              (  334) AACCCGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_009515.2              (  334) AGCCCGGAGATGGAACCTGAGACAAGGTTCCAGGCCCTACGGGGTGCAGCAGGCGCGAAA  1 
NC_021313.1              (  335) AGCCCGGAGACGGTATCTGAGACAAGATACCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_008212.2              (  336) AACCTGGAGACGGAATCTGAGACAAGATTCCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_007681.1              (  345) AGCCCGGAGATGGAACCTGAGACAAGGTTCCAGACCCTACGGGGTGCAGCAGGCGCGAAA  1 
NC_008942.1              (  330) ATCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGCAA  1 
NC_021592.1              (  334) AGCCCGGAGATGGACTCTGAGACATAAGTCCAGGCCCTACGGGGCGCAGCAGGCGCGAAC  1 
NC_020892.1              (  329) AGCCCAGAGTTGGATTCTGAGACACGAATCCAGGCCCTACGGGGCGCAGCAGTCGCGAAA  1 
NC_013202.1              (  335) AACCCGGAGACGGTATCTGAGACAAGATACCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_013201.1              (  336) AACCCGGAGACGGTATCTGAGACAAGATACCGGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_013849.1              (  369) AGCCCGGAGATGGCCCCTGAGACACGGGGCCAGGCCCTACGGGGCGCAGCAGGCGCGAAA  1 
NC_014205.1              (  362) AGCCCCCAGATGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGTGCACCAGGCGCGAAA  1 
NC_015518.1              (  360) AGCCCCCAGTTGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGCGCACCAGGCGCGAAA  1 
NC_022093.1              (  370) AGCCCCGAGATGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGTGCACCAGGGGCGAAA  1 
NC_017461.1              (  362) AGCCCCCAGATGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGCGCACCAGGCGGGAAA  1 
NC_009440.1              (  359) AGCCCCCAGTTGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGCGCACCAGGCGCGGAA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 6.0e-740 
   208  -1169  -1169  -1169 
   -96  -1169    142   -266 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    193  -1169   -266 
  -196    -75    131  -1169 
 -1169   -107    147  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
   195  -1169  -1169   -108 
 -1169     10  -1169    192 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   162   -306   -107   -108 
    62     52  -1169     51 
   -38   -107  -1169    186 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
   113     39  -1169    -34 
  -296   -306    151   -266 
   156  -1169     -7  -1169 
    21  -1169     19     92 
  -138    -75   -339    192 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
   162  -1169    -22  -1169 
 -1169  -1169    165  -1169 
  -296  -1169    161  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169    169  -1169     -8 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    -75    142  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    161   -266 
 -1169    193   -339  -1169 
 -1169  -1169    165  -1169 
 -1169    193   -339  -1169 
 -1169  -1169    165  -1169 
   199   -306   -339  -1169 
   208  -1169  -1169  -1169 
   204   -306  -1169  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 6.0e-740 
 1.000000  0.000000  0.000000  0.000000 
 0.121212  0.000000  0.848485  0.030303 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.969697  0.000000  0.030303 
 0.060606  0.151515  0.787879  0.000000 
 0.000000  0.121212  0.878788  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.909091  0.000000  0.000000  0.090909 
 0.000000  0.272727  0.000000  0.727273 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.727273  0.030303  0.151515  0.090909 
 0.363636  0.363636  0.000000  0.272727 
 0.181818  0.121212  0.000000  0.696970 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.515152  0.333333  0.000000  0.151515 
 0.030303  0.030303  0.909091  0.030303 
 0.696970  0.000000  0.303030  0.000000 
 0.272727  0.000000  0.363636  0.363636 
 0.090909  0.151515  0.030303  0.727273 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.727273  0.000000  0.272727  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.818182  0.000000  0.181818 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.151515  0.848485  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.969697  0.030303 
 0.000000  0.969697  0.030303  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.969697  0.030303  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.939394  0.030303  0.030303  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.969697  0.030303  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 6 regular expression
--------------------------------------------------------------------------------
AGCCCGGAGA[TC]GGA[ACT]TCTGAGACA[AC]G[AG][GTA]TCC[AG]GGCCCTACGGGGCGCAGCAGGCGCGAAA
--------------------------------------------------------------------------------




Time 116.78 secs.

********************************************************************************


********************************************************************************
MOTIF  7 MEME	width =  60  sites =  33  llr = 2220  E-value = 1.5e-725
********************************************************************************
--------------------------------------------------------------------------------
	Motif 7 Description
--------------------------------------------------------------------------------
Simplified        A  a::::a::::8::a:::::::aa1:21::::::29:a::::11::a:aa2:121231a:a
pos.-specific     C  :a::3::::a2:3:1:aaaa::::535a6:::a1:a:a:a:2:9::a:::::56::::a:
probability       G  ::aa::aa:::a:::a::::a:::322::aaa::1:::a:a89:::::::a911879:::
matrix            T  ::::7:::a:::7:9::::::::9242:4::::7:::::::::1a::::8::33::1:::

         bits    2.4         *                                   *               
                 2.1 *    *  *    *       **             *       *  **          *
                 1.9 **   *  **   ** **** ***   *    *  *** *    *****        ***
                 1.7 ***  ***** * ***********   * **** *******   *******      ***
Relative         1.4 ************************   * **** ******* **********     ***
Entropy          1.2 ************************   ****** ******* **********     ***
(97.1 bits)      1.0 ************************   ************** **********  * ****
                 0.7 ************************   ************************* *******
                 0.5 *************************  ************************* *******
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           ACGGTAGGTCAGTATGCCCCGAATCTCCCGGGCTACACGCGGGCTACAATGGCCGGGACA
consensus                C       C           GCG T    A                  TTAA    
sequence                                                                         
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_014253.1                1183  1.09e-35 GGTGCGGGCT ACGGTAGGTCAGTATGCCCCGAATCTCCCGGGCTACACGCGGGCTACAATGGTCGGGACA ATGGGTCCCT
NC_007955.1                1186  2.72e-35 GGTGCGGGCT ACGGTAGGTCAGTATGCCCCGAATCTCCCGGGCTACACGCGGGCTACAATGGTTGGGACA ATGGGTTCCT
NC_017527.1                1185  3.85e-33 GGAGTGGGCA ACGGTAGGTCAGTATGCCCCGAATCTCCCGGGCTACACGCGGGCTACAATGGTTGGTACA ATGGGCATCT
NC_013849.1                1221  9.75e-33 GGTGCGGGCA ACGGCAGGTCCGTATGCCCCGAATCCCCCGGGCTACACGCGGGCTACAATGGCCGGGACA ATGGGTACCG
NC_015216.1                1192  1.74e-32 GGAGTGGACG ACGGTAGGTCCGTATGCCCCGAATCCCCTGGGCTACACGCGGGCTACAATGGCTAGGACA ATGGGTTCCA
NC_014507.1                1179  2.30e-32 GGAATGGGCA ACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGTCGGGACA ATGAGCAACG
NC_007355.1                1188  4.45e-32 GGTGCGGGCC ACGGTAGGTCAGTATGCCCCGAATTTCCCGGGCTACACGCGGGCTACAATGAATGGGACA ATGGGTCCCT
NC_008942.1                1176  6.49e-32 GGAATGGGCA ACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGACGGGACA ATGGGTAACA
NC_007426.1                1183  6.49e-32 GGAACGGGCA ACGGTAGGTCAGTATGCCCCGAATGAGCTGGGCTACACGCGGGCTACAATGGCCAAGACA GTGGGATGCG
NC_012028.1                1186  7.34e-32 GGAACGGGCA ACGGTAGGTCAGTATGCCCCGAATGCGCTGGGCAACACGCGGGCTACAATGGTCGAGACA AAGGGTTCCA
NC_014205.1                1209  1.33e-31 GGAGGGGGCC ACGGCAGGTCAGCATGCCCCGAATCCCCCGGGCTACACGCGGGCTACAATGGCGGGGACA GCGGGATCCG
NC_009515.2                1187  1.67e-31 GGAGTGGACG ACGGTAGGTCCGTATGCCCCGAATCCTCTGGGCAACACGCGGGCTACAATGGCTGAGACA ATGGGTTCCG
NC_007796.1                1178  2.09e-31 GGAATGGGCA ACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGACAGGACA ATGGGTTTCG
NC_002607.1                1188  2.34e-31 GGAACGGGCA ACGGTAGGTCAGTATGCCCCGAATGGGCTGGGCAACACGCGGGCTACAATGGTCGAGACA ATGGGAAGCC
NC_009712.1                1177  3.24e-31 GGAATGGGCA ACGGTAGGTCAGCATGCCCCGAATTGTCCGGGCTACACGCGGGCTACAATGGGTGGGACA ATGGGTATCG
NC_021313.1                1188  3.60e-31 GGAGCGGGCA ACGGTAGGTCAGTATGCCCCGAATGTGCCGGGCGACACGCGGGCTACAATGGCCGAGACA GTGGGATGCG
NC_008212.2                1190  4.44e-31 GGAACGGGCA ACGGTAGGTCAGTATGCCCCGAATGAGCTGGGCAACACGCGGGCTACAATGGCTAAGACA ATGGGTCGCT
NC_014729.1                1185  5.45e-31 GGAATGGGCA ACGGTAGGTCAGTATGCCCCGAATGAGCTGGGCTACACGCGGGCTACAATGGCCAGAACA ATGGGTTGCA
NC_013202.1                1189  6.66e-31 GGAACGGGCA ACGGTAGGTCAGTATGCCCCGAATGGACTGGGCAACACGCGGGCTACAATGGTCGAGACA GTGGGATGCG
NC_013201.1                1188  6.66e-31 GGAACGGGCA ACGGTAGGTCAGTATGCCCCGAATGGACTGGGCAACACGCGGGCTACAATGGTCGAGACA ATGGGTCGCG
NC_013926.1                1187  1.57e-30 GGTGGGGTCA ACGGTAGGTCAGTACGCCCCGAATCCCCCGGGCTACACGCGCGCTACAAAGGGCGGGACA ATGGGTTGCG
NC_002578.1                1184  1.57e-30 GGAGGGGTCG ACGGCAGGTCAGTACGCCCCGAATCTCCCGGGCTACACGCGCGCTACAAAGGACGGGACA ATGAGTTGCA
NC_015416.1                1178  1.72e-30 GGAATGGGCA ACGGTAGGTCAGTATGCCCCGAATATCCCGGGCTACACGCGAGCTACAATGGTTGGTACA ATGGGTATCT
NC_017461.1                1210  2.26e-30 GGTGGGGGCC ACGGCAGGTCAGCATGCCCCGAAACCCCCGGGCTGCACGCGGGCTACAATGGCTGGGACA GCGGGAACCG
NC_015954.1                1190  2.26e-30 GGAACGGGCA ACGGTAGGTCAGTATGCCCCGAATGGGCTGGGCAACACGCGGGCTACAATGGCCGAAACA ATGGGTTCCA
NC_000909.2                1188  2.26e-30 GGTGCGGGCA ACGACAGGTCCGCATGCCCCGAATCCCCTGGGCTACACGCGGGCTACAATGGCCGGGACA ATGGGACGCG
NC_020892.1                1177  2.69e-30 GGAGAGGTCA ACGGTAGGTCAGTATGCCCTGAATCTCCTGGGCTACACGCGCGCTACAAAGGGCGGGACA ATGGGTTCCG
NC_007681.1                1195  9.19e-30 GGAGTGGACG ACGGTAGGTCCGTATGCCCCGAATCTCCTGGGCTACACGCGGGCTACAATGGCTATGGCA ATGGGTTTCT
NC_022093.1                1216  6.03e-29 GGTGGGGGCT ACGGCAGGTCAGTATGCCCCGAAACCCCCGGGCTACACGCGAGCTGCAATGGCGGGGACA ACGGGTTCCG
NC_005877.1                1191  1.18e-28 GGAGGGGTCG ACGGCAGGTCAGTACGCCCCGAATCTCCCGGGCTACACGCGCATTACAAAGGGCAGGACA ATGCGTTGCA
NC_015518.1                1204  2.11e-28 GGAGGGGGCC ACGGCAGGTCAGCATGCCCCGAAACCCCCGGGCCGCACGCGGGTTACAATGGCAGGGACA GCGGGATTCC
NC_009440.1                1203  2.50e-28 GGAGGGGGCC ACGGCAGGTCAGCATGCCCCGAAACTTCCGGGCCGCACGCGGGTTACAATGGCAGGGACA GCGGGATCCG
NC_021592.1                1181  2.96e-28 GGAGTGGTCG ACGGCAGGTCAGTACGCCCCGAATTTCCCGGGCTACACGCGCATTACAAAGAACGGGACA ATACGTTGCA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_014253.1                       1.1e-35  1182_[+7]_334
NC_007955.1                       2.7e-35  1185_[+7]_330
NC_017527.1                       3.8e-33  1184_[+7]_330
NC_013849.1                       9.8e-33  1220_[+7]_330
NC_015216.1                       1.7e-32  1191_[+7]_333
NC_014507.1                       2.3e-32  1178_[+7]_329
NC_007355.1                       4.4e-32  1187_[+7]_330
NC_008942.1                       6.5e-32  1175_[+7]_329
NC_007426.1                       6.5e-32  1182_[+7]_323
NC_012028.1                       7.3e-32  1185_[+7]_324
NC_014205.1                       1.3e-31  1208_[+7]_342
NC_009515.2                       1.7e-31  1186_[+7]_329
NC_007796.1                       2.1e-31  1177_[+7]_328
NC_002607.1                       2.3e-31  1187_[+7]_325
NC_009712.1                       3.2e-31  1176_[+7]_329
NC_021313.1                       3.6e-31  1187_[+7]_323
NC_008212.2                       4.4e-31  1189_[+7]_323
NC_014729.1                       5.4e-31  1184_[+7]_334
NC_013202.1                       6.7e-31  1188_[+7]_324
NC_013201.1                       6.7e-31  1187_[+7]_324
NC_013926.1                       1.6e-30  1186_[+7]_326
NC_002578.1                       1.6e-30  1183_[+7]_327
NC_015416.1                       1.7e-30  1177_[+7]_330
NC_017461.1                       2.3e-30  1209_[+7]_332
NC_015954.1                       2.3e-30  1189_[+7]_323
NC_000909.2                       2.3e-30  1187_[+7]_330
NC_020892.1                       2.7e-30  1176_[+7]_328
NC_007681.1                       9.2e-30  1194_[+7]_335
NC_022093.1                         6e-29  1215_[+7]_337
NC_005877.1                       1.2e-28  1190_[+7]_318
NC_015518.1                       2.1e-28  1203_[+7]_335
NC_009440.1                       2.5e-28  1202_[+7]_344
NC_021592.1                         3e-28  1180_[+7]_330
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 7 width=60 seqs=33
NC_014253.1              ( 1183) ACGGTAGGTCAGTATGCCCCGAATCTCCCGGGCTACACGCGGGCTACAATGGTCGGGACA  1 
NC_007955.1              ( 1186) ACGGTAGGTCAGTATGCCCCGAATCTCCCGGGCTACACGCGGGCTACAATGGTTGGGACA  1 
NC_017527.1              ( 1185) ACGGTAGGTCAGTATGCCCCGAATCTCCCGGGCTACACGCGGGCTACAATGGTTGGTACA  1 
NC_013849.1              ( 1221) ACGGCAGGTCCGTATGCCCCGAATCCCCCGGGCTACACGCGGGCTACAATGGCCGGGACA  1 
NC_015216.1              ( 1192) ACGGTAGGTCCGTATGCCCCGAATCCCCTGGGCTACACGCGGGCTACAATGGCTAGGACA  1 
NC_014507.1              ( 1179) ACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGTCGGGACA  1 
NC_007355.1              ( 1188) ACGGTAGGTCAGTATGCCCCGAATTTCCCGGGCTACACGCGGGCTACAATGAATGGGACA  1 
NC_008942.1              ( 1176) ACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGACGGGACA  1 
NC_007426.1              ( 1183) ACGGTAGGTCAGTATGCCCCGAATGAGCTGGGCTACACGCGGGCTACAATGGCCAAGACA  1 
NC_012028.1              ( 1186) ACGGTAGGTCAGTATGCCCCGAATGCGCTGGGCAACACGCGGGCTACAATGGTCGAGACA  1 
NC_014205.1              ( 1209) ACGGCAGGTCAGCATGCCCCGAATCCCCCGGGCTACACGCGGGCTACAATGGCGGGGACA  1 
NC_009515.2              ( 1187) ACGGTAGGTCCGTATGCCCCGAATCCTCTGGGCAACACGCGGGCTACAATGGCTGAGACA  1 
NC_007796.1              ( 1178) ACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGACAGGACA  1 
NC_002607.1              ( 1188) ACGGTAGGTCAGTATGCCCCGAATGGGCTGGGCAACACGCGGGCTACAATGGTCGAGACA  1 
NC_009712.1              ( 1177) ACGGTAGGTCAGCATGCCCCGAATTGTCCGGGCTACACGCGGGCTACAATGGGTGGGACA  1 
NC_021313.1              ( 1188) ACGGTAGGTCAGTATGCCCCGAATGTGCCGGGCGACACGCGGGCTACAATGGCCGAGACA  1 
NC_008212.2              ( 1190) ACGGTAGGTCAGTATGCCCCGAATGAGCTGGGCAACACGCGGGCTACAATGGCTAAGACA  1 
NC_014729.1              ( 1185) ACGGTAGGTCAGTATGCCCCGAATGAGCTGGGCTACACGCGGGCTACAATGGCCAGAACA  1 
NC_013202.1              ( 1189) ACGGTAGGTCAGTATGCCCCGAATGGACTGGGCAACACGCGGGCTACAATGGTCGAGACA  1 
NC_013201.1              ( 1188) ACGGTAGGTCAGTATGCCCCGAATGGACTGGGCAACACGCGGGCTACAATGGTCGAGACA  1 
NC_013926.1              ( 1187) ACGGTAGGTCAGTACGCCCCGAATCCCCCGGGCTACACGCGCGCTACAAAGGGCGGGACA  1 
NC_002578.1              ( 1184) ACGGCAGGTCAGTACGCCCCGAATCTCCCGGGCTACACGCGCGCTACAAAGGACGGGACA  1 
NC_015416.1              ( 1178) ACGGTAGGTCAGTATGCCCCGAATATCCCGGGCTACACGCGAGCTACAATGGTTGGTACA  1 
NC_017461.1              ( 1210) ACGGCAGGTCAGCATGCCCCGAAACCCCCGGGCTGCACGCGGGCTACAATGGCTGGGACA  1 
NC_015954.1              ( 1190) ACGGTAGGTCAGTATGCCCCGAATGGGCTGGGCAACACGCGGGCTACAATGGCCGAAACA  1 
NC_000909.2              ( 1188) ACGACAGGTCCGCATGCCCCGAATCCCCTGGGCTACACGCGGGCTACAATGGCCGGGACA  1 
NC_020892.1              ( 1177) ACGGTAGGTCAGTATGCCCTGAATCTCCTGGGCTACACGCGCGCTACAAAGGGCGGGACA  1 
NC_007681.1              ( 1195) ACGGTAGGTCCGTATGCCCCGAATCTCCTGGGCTACACGCGGGCTACAATGGCTATGGCA  1 
NC_022093.1              ( 1216) ACGGCAGGTCAGTATGCCCCGAAACCCCCGGGCTACACGCGAGCTGCAATGGCGGGGACA  1 
NC_005877.1              ( 1191) ACGGCAGGTCAGTACGCCCCGAATCTCCCGGGCTACACGCGCATTACAAAGGGCAGGACA  1 
NC_015518.1              ( 1204) ACGGCAGGTCAGCATGCCCCGAAACCCCCGGGCCGCACGCGGGTTACAATGGCAGGGACA  1 
NC_009440.1              ( 1203) ACGGCAGGTCAGCATGCCCCGAAACTTCCGGGCCGCACGCGGGTTACAATGGCAGGGACA  1 
NC_021592.1              ( 1181) ACGGCAGGTCAGTACGCCCCGAATTTCCCGGGCTACACGCGCATTACAAAGAACGGGACA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 1.5e-725 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
  -296  -1169    161  -1169 
 -1169     25  -1169    186 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
   185    -75  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169     10  -1169    192 
   208  -1169  -1169  -1169 
 -1169   -107  -1169    219 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    193  -1169   -266 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   -96  -1169  -1169    219 
  -296    102    -22     -8 
   -38     25   -107     92 
  -196    110    -58     -8 
 -1169    198  -1169  -1169 
 -1169    125  -1169    104 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
   -15   -207   -339    186 
   195  -1169   -181  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
  -196    -75    131  -1169 
  -196  -1169    156  -1169 
 -1169    179  -1169    -66 
 -1169  -1169  -1169    238 
   204  -1169   -339  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   -64  -1169  -1169    214 
 -1169  -1169    165  -1169 
  -196  -1169    156  -1169 
   -64     84   -139     51 
  -196    118   -239     66 
   -15  -1169    131  -1169 
    21  -1169    113   -266 
  -196  -1169    147   -166 
   204  -1169   -339  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 1.5e-725 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.303030  0.000000  0.696970 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.848485  0.151515  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.272727  0.000000  0.727273 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.121212  0.000000  0.878788 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.121212  0.000000  0.000000  0.878788 
 0.030303  0.515152  0.272727  0.181818 
 0.181818  0.303030  0.151515  0.363636 
 0.060606  0.545455  0.212121  0.181818 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.606061  0.000000  0.393939 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.212121  0.060606  0.030303  0.696970 
 0.909091  0.000000  0.090909  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.060606  0.151515  0.787879  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  0.878788  0.000000  0.121212 
 0.000000  0.000000  0.000000  1.000000 
 0.969697  0.000000  0.030303  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.151515  0.000000  0.000000  0.848485 
 0.000000  0.000000  1.000000  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.151515  0.454545  0.121212  0.272727 
 0.060606  0.575758  0.060606  0.303030 
 0.212121  0.000000  0.787879  0.000000 
 0.272727  0.000000  0.696970  0.030303 
 0.060606  0.000000  0.878788  0.060606 
 0.969697  0.000000  0.030303  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 7 regular expression
--------------------------------------------------------------------------------
ACGG[TC]AGGTCAG[TC]ATGCCCCGAAT[CG][TC][CG]C[CT]GGGC[TA]ACACGCGGGCTACAATGG[CT][CT][GA][GA]GACA
--------------------------------------------------------------------------------




Time 133.37 secs.

********************************************************************************


********************************************************************************
MOTIF  8 MEME	width =  60  sites =  33  llr = 2220  E-value = 1.2e-723
********************************************************************************
--------------------------------------------------------------------------------
	Motif 8 Description
--------------------------------------------------------------------------------
Simplified        A  :::::a:::::::::::aa:a::2::5::1:2a:::3:22::52:4::a:::2::::aaa
pos.-specific     C  :::8a::aa:aa:a:::::4:aa2:a2294a:::::::2:68:6:2:::2::::88::::
probability       G  a:a:::a::a::a:aa:::::::7a:38:1:8:a:a7:78225:21:::::a8a::::::
matrix            T  :a:2::::::::::::a::6::::::::14::::a::a::2::284aa:8a:::22a:::

         bits    2.4  *              *                 *           **  *     *   
                 2.1  *   *          *** *           * *  *        *** *     ****
                 1.9  *  ** *  ** *  *** ***  *    * * *  *        *** *     ****
                 1.7 *** *************** ***  *  * * ***  *      * ****** *  ****
Relative         1.4 *** *************** *** **  * * **** *      * ****** * *****
Entropy          1.2 *********************** ** ** * **** *      * **************
(97.1 bits)      1.0 *********************** ** ** ******** * ** * **************
                 0.7 *********************** ** ** ******** ****** **************
                 0.5 ***************************** ******************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           GTGCCAGCCGCCGCGGTAATACCGGCAGCTCGAGTGGTGGCCACTTTTATTGGGCCTAAA
consensus                               C      G  C A    A  AT GA A        T     
sequence                                                                         
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_013202.1                 503  1.55e-33 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCAGCACGAGTGATGGCCGCTATTATTGGGCCTAAA GCGTTCGTAG
NC_015216.1                 507  3.28e-33 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTGGCCATTTTTATTGGGCCTAAA GCGTTCGTAG
NC_013926.1                 502  3.82e-33 GGCAAGACGG GTGCCAGCCGCCGCGGTAATACCCGCAGCTCGAGTGGTGGCCACTATTATTGAGCCTAAA GCGTCCGTAG
NC_021313.1                 503  4.53e-33 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCAGCACGAGTGATGGCCGATTTTATTGGGCCTAAA GCGTCCGTAG
NC_014507.1                 496  5.49e-33 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGACCACTATTATTGGGCTTAAA GCGTTCGTAG
NC_012028.1                 502  5.49e-33 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGATCTTATTGGGCCTAAA GCGTCCGTAG
NC_008212.2                 504  5.49e-33 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGATCTTATTGGGCCTAAA GCGTCCGTAG
NC_014729.1                 500  8.89e-33 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGGCCAATCTTATTGGGCCTAAA GCGTCCGTAG
NC_015954.1                 503  1.06e-32 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGACCGATTTTATTGGGCCTAAA GCGTCCGTAG
NC_007426.1                 498  2.27e-32 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCAGCCCAAGTGATGGCCGATATTATTGGGCCTAAA GCGTCCGTAG
NC_009712.1                 494  3.00e-32 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGGCCACTATTACTGGGCTTAAA GCGTTCGTAG
NC_007796.1                 495  5.24e-32 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGGCCGCTATTACTGGGCTTAAA GGGTCCGTAG
NC_014253.1                 500  8.85e-32 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTGATCGCTATTATTGGGTCTAAA GGGTCCGTAG
NC_017527.1                 502  1.00e-31 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTAACCGCTTTTATTGGGTCTAAA GGGTCTGTAG
NC_007955.1                 503  1.64e-31 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTAATCACTTTTATTGGGTCTAAA GGGTCCGTAG
NC_013201.1                 504  1.85e-31 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGCTGTTATTGGGCCTAAA GCGTCCGTAG
NC_002607.1                 502  2.08e-31 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGGCCTAAA GCGTCCGTAG
NC_020892.1                 496  2.34e-31 GGTAAGACGG GTGCCAGCCGCCGCGGTAATACCCGCAGCCCGAGTGGTGGTCGATTTTATTGAGTCTAAA ACGTTCGTAG
NC_002578.1                 503  2.62e-31 GGCAAGACGG GTGCCAGCCGCCGCGGTAACACCCGCAGCTCGAGTGGTGATCACTTTTATTGAGTCTAAA GCGTTCGTAA
NC_015416.1                 495  3.66e-31 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCGGCTCGAGTGGTAACCGTTATTATTGGGTCTAAA GGGTCTGTAG
NC_005877.1                 510  1.03e-30 GGTAAGACGG GTGCCAGCCGCCGCGGTAACACCCGCAGCTCAAGTGGTGGTCACTTTTACTGAGCCTAAA GCGTTCGTAG
NC_008942.1                 493  1.14e-30 GGCAAGACCG GTGCCAGCCGCCGCGGTAATACCGGCTGCTCGAGTGATGGCCACTATTACTGGGTTTAAA GCGTCCGTAG
NC_007681.1                 512  1.38e-30 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTAGCTGTTTTTATTGGGCCTAAA GCGTTCGTAG
NC_000909.2                 507  1.38e-30 GGCAAGTCCG GTGCCAGCAGCCGCGGTAATACCGGCGGCCCAAGTGGTGGCCACTGTTATTGGGCCTAAA GCGTCCGTAG
NC_007355.1                 505  2.61e-30 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTGATCGTGATTATTGGGTCTAAA GGGTCCGTAG
NC_013849.1                 536  4.35e-30 GGCAAGGCCG GTGGCAGCCGCCGCGGTAATACCGGCGGCCCGAGTGGCGGCCACTATTATTGGGCCTAAA GCGTCCGTAG
NC_021592.1                 500  4.73e-30 GGTAAGACGG GTGCCAGCCGCCGCGGTAACACCCGCAGCACGAGTAGTGGTCACTTTTATTGAGCCTAAA GCGTTCGTAG
NC_009515.2                 502  7.61e-30 GGCAAGACCG GTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGTGGTAGCAGTTTTTATTGGGCCTAAA GCGTCCGTAG
NC_014205.1                 527  1.64e-28 GGCAAGACTG GTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGATTATTGGGCCTAAA GCGCCCGTAG
NC_009440.1                 522  3.21e-28 GGCAAGACTG GTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGATCGGGACGTTTATTGGGCTTAAA GCGCCCGTAG
NC_017461.1                 528  3.38e-28 GGCAAGTCTG GTGTCAGCCGCCGCGGTAATACCAGCCCCACGAGTGGTCGGGACGGTTATTGGGCCTAAA GCGCCCGTAG
NC_022093.1                 536  7.72e-28 GGCAAGCTTG GTGTCAGCCGCCGCGGTAATACCAACCCCGCGAGTGGTCGGGACGTTTATTGGGCCTAAA GCGTCCGTAG
NC_015518.1                 523  1.38e-27 GGCAAGACTG GTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGCTTACTGGGCTTAAA GCGCCCGTAG
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_013202.1                       1.6e-33  502_[+8]_1010
NC_015216.1                       3.3e-33  506_[+8]_1018
NC_013926.1                       3.8e-33  501_[+8]_1011
NC_021313.1                       4.5e-33  502_[+8]_1008
NC_014507.1                       5.5e-33  495_[+8]_1012
NC_012028.1                       5.5e-33  501_[+8]_1008
NC_008212.2                       5.5e-33  503_[+8]_1009
NC_014729.1                       8.9e-33  499_[+8]_1019
NC_015954.1                       1.1e-32  502_[+8]_1010
NC_007426.1                       2.3e-32  497_[+8]_1008
NC_009712.1                         3e-32  493_[+8]_1012
NC_007796.1                       5.2e-32  494_[+8]_1011
NC_014253.1                       8.9e-32  499_[+8]_1017
NC_017527.1                         1e-31  501_[+8]_1013
NC_007955.1                       1.6e-31  502_[+8]_1013
NC_013201.1                       1.8e-31  503_[+8]_1008
NC_002607.1                       2.1e-31  501_[+8]_1011
NC_020892.1                       2.3e-31  495_[+8]_1009
NC_002578.1                       2.6e-31  502_[+8]_1008
NC_015416.1                       3.7e-31  494_[+8]_1013
NC_005877.1                         1e-30  509_[+8]_999
NC_008942.1                       1.1e-30  492_[+8]_1012
NC_007681.1                       1.4e-30  511_[+8]_1018
NC_000909.2                       1.4e-30  506_[+8]_1011
NC_007355.1                       2.6e-30  504_[+8]_1013
NC_013849.1                       4.4e-30  535_[+8]_1015
NC_021592.1                       4.7e-30  499_[+8]_1011
NC_009515.2                       7.6e-30  501_[+8]_1014
NC_014205.1                       1.6e-28  526_[+8]_1024
NC_009440.1                       3.2e-28  521_[+8]_1025
NC_017461.1                       3.4e-28  527_[+8]_1014
NC_022093.1                       7.7e-28  535_[+8]_1017
NC_015518.1                       1.4e-27  522_[+8]_1016
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 8 width=60 seqs=33
NC_013202.1              (  503) GTGCCAGCCGCCGCGGTAATACCGGCAGCACGAGTGATGGCCGCTATTATTGGGCCTAAA  1 
NC_015216.1              (  507) GTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTGGCCATTTTTATTGGGCCTAAA  1 
NC_013926.1              (  502) GTGCCAGCCGCCGCGGTAATACCCGCAGCTCGAGTGGTGGCCACTATTATTGAGCCTAAA  1 
NC_021313.1              (  503) GTGCCAGCCGCCGCGGTAATACCGGCAGCACGAGTGATGGCCGATTTTATTGGGCCTAAA  1 
NC_014507.1              (  496) GTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGACCACTATTATTGGGCTTAAA  1 
NC_012028.1              (  502) GTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGATCTTATTGGGCCTAAA  1 
NC_008212.2              (  504) GTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGATCTTATTGGGCCTAAA  1 
NC_014729.1              (  500) GTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGGCCAATCTTATTGGGCCTAAA  1 
NC_015954.1              (  503) GTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGACCGATTTTATTGGGCCTAAA  1 
NC_007426.1              (  498) GTGCCAGCCGCCGCGGTAACACCGGCAGCCCAAGTGATGGCCGATATTATTGGGCCTAAA  1 
NC_009712.1              (  494) GTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGGCCACTATTACTGGGCTTAAA  1 
NC_007796.1              (  495) GTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGGCCGCTATTACTGGGCTTAAA  1 
NC_014253.1              (  500) GTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTGATCGCTATTATTGGGTCTAAA  1 
NC_017527.1              (  502) GTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTAACCGCTTTTATTGGGTCTAAA  1 
NC_007955.1              (  503) GTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTAATCACTTTTATTGGGTCTAAA  1 
NC_013201.1              (  504) GTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGCTGTTATTGGGCCTAAA  1 
NC_002607.1              (  502) GTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGGCCTAAA  1 
NC_020892.1              (  496) GTGCCAGCCGCCGCGGTAATACCCGCAGCCCGAGTGGTGGTCGATTTTATTGAGTCTAAA  1 
NC_002578.1              (  503) GTGCCAGCCGCCGCGGTAACACCCGCAGCTCGAGTGGTGATCACTTTTATTGAGTCTAAA  1 
NC_015416.1              (  495) GTGCCAGCCGCCGCGGTAACACCGGCGGCTCGAGTGGTAACCGTTATTATTGGGTCTAAA  1 
NC_005877.1              (  510) GTGCCAGCCGCCGCGGTAACACCCGCAGCTCAAGTGGTGGTCACTTTTACTGAGCCTAAA  1 
NC_008942.1              (  493) GTGCCAGCCGCCGCGGTAATACCGGCTGCTCGAGTGATGGCCACTATTACTGGGTTTAAA  1 
NC_007681.1              (  512) GTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTAGCTGTTTTTATTGGGCCTAAA  1 
NC_000909.2              (  507) GTGCCAGCAGCCGCGGTAATACCGGCGGCCCAAGTGGTGGCCACTGTTATTGGGCCTAAA  1 
NC_007355.1              (  505) GTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTGATCGTGATTATTGGGTCTAAA  1 
NC_013849.1              (  536) GTGGCAGCCGCCGCGGTAATACCGGCGGCCCGAGTGGCGGCCACTATTATTGGGCCTAAA  1 
NC_021592.1              (  500) GTGCCAGCCGCCGCGGTAACACCCGCAGCACGAGTAGTGGTCACTTTTATTGAGCCTAAA  1 
NC_009515.2              (  502) GTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGTGGTAGCAGTTTTTATTGGGCCTAAA  1 
NC_014205.1              (  527) GTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGATTATTGGGCCTAAA  1 
NC_009440.1              (  522) GTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGATCGGGACGTTTATTGGGCTTAAA  1 
NC_017461.1              (  528) GTGTCAGCCGCCGCGGTAATACCAGCCCCACGAGTGGTCGGGACGGTTATTGGGCCTAAA  1 
NC_022093.1              (  536) GTGTCAGCCGCCGCGGTAATACCAACCCCGCGAGTGGTCGGGACGTTTATTGGGCCTAAA  1 
NC_015518.1              (  523) GTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGCTTACTGGGCTTAAA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 1.2e-723 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    169   -339    -34 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
  -296    193  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169     52  -1169    173 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
   -64    -75    113  -1169 
  -296  -1169    161  -1169 
 -1169    198  -1169  -1169 
   113    -75     -7   -266 
 -1169    -75    142  -1169 
 -1169    189  -1169   -166 
   -96     52   -139    104 
 -1169    198  -1169  -1169 
   -15  -1169    125   -266 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
  -296  -1169    161  -1169 
    50  -1169    107  -1169 
 -1169   -306  -1169    234 
   -64    -75    113  -1169 
     4  -1169    125  -1169 
 -1169    132   -107     14 
  -296    163   -107   -266 
   113  -1169     61  -1169 
     4    125  -1169    -34 
 -1169  -1169    -81    209 
    62    -75   -181    104 
 -1169  -1169  -1169    238 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169    -75  -1169    214 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
   -64  -1169    142  -1169 
 -1169  -1169    165  -1169 
 -1169    158  -1169     34 
 -1169    169  -1169     -8 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 1.2e-723 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.818182  0.030303  0.151515 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.030303  0.969697  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.363636  0.000000  0.636364 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.151515  0.151515  0.696970  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.515152  0.151515  0.303030  0.030303 
 0.000000  0.151515  0.848485  0.000000 
 0.000000  0.939394  0.000000  0.060606 
 0.121212  0.363636  0.121212  0.393939 
 0.000000  1.000000  0.000000  0.000000 
 0.212121  0.000000  0.757576  0.030303 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.333333  0.000000  0.666667  0.000000 
 0.000000  0.030303  0.000000  0.969697 
 0.151515  0.151515  0.696970  0.000000 
 0.242424  0.000000  0.757576  0.000000 
 0.000000  0.636364  0.151515  0.212121 
 0.030303  0.787879  0.151515  0.030303 
 0.515152  0.000000  0.484848  0.000000 
 0.242424  0.606061  0.000000  0.151515 
 0.000000  0.000000  0.181818  0.818182 
 0.363636  0.151515  0.090909  0.393939 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.151515  0.000000  0.848485 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.151515  0.000000  0.848485  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.757576  0.000000  0.242424 
 0.000000  0.818182  0.000000  0.181818 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 8 regular expression
--------------------------------------------------------------------------------
GTGCCAGCCGCCGCGGTAA[TC]ACCGGC[AG]GC[TC]C[GA]AGTG[GA]TG[GA][CT]C[AG][CA]T[TA]TTATTGGG[CT]CTAAA
--------------------------------------------------------------------------------




Time 154.91 secs.

********************************************************************************


********************************************************************************
MOTIF  9 MEME	width =  60  sites =  33  llr = 2197  E-value = 4.5e-712
********************************************************************************
--------------------------------------------------------------------------------
	Motif 9 Description
--------------------------------------------------------------------------------
Simplified        A  7a1::::::::a:::::::3:9::::a:::::a::2122:1::8::7a:::a:::2a:::
pos.-specific     C  2:3:a7:::::::aa::9a::12287:72:a:::8:::1:48::5::::aa:::8::::8
probability       G  1:::::a9::a:::::a1:7a:88:2:::a:::::8977:12a1::::a::::a26:a::
matrix            T  ::7a:3:1aa::a::a::::::::22:38::a:a2::11a41::5a3:::::a::2::a2

         bits    2.4    *    *   *  *               * *     *     *      *     * 
                 2.1  * *    ** **  *               ***     *     * *   **   * * 
                 1.9  * **   ** *****  *       *   ****     *     * *  ***   * * 
                 1.7  * ** * ********* * *     * ******     *     * * *****  *** 
Relative         1.4  * ** * *********** **    * ******     *  ** ********** ****
Entropy          1.2  ****************** **  * ********  *  *  ************* ****
(96.1 bits)      1.0 ********************** ** ***********  * ************** ****
                 0.7 ************************************** * ************** ****
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           AATTCCGGTTGATCCTGCCGGAGGCCACTGCTATCGGGGTCCGACTAAGCCATGCGAGTC
consensus            C C  T             A    T  T         A  T   T T        T   T
sequence                                                                         
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_000909.2                  49  6.75e-36 CCTCCCACTT AATTCCGGTTGATCCTGCCGGAGGCCACTGCTATCGGGGTCCGACTAAGCCATGCGAGTC AAGGGGCTCC
NC_014507.1                  49  1.11e-34 GAAAAAAAAT AATTCTGGTTGATCCTGCCAGAGGTCACTGCTATCGGGGTTCGATTAAGCCATGCGAGTC GAGAGGGTTT
NC_009712.1                  48  1.41e-34 GTACAATTTG AATTCTGGTTGATCCTGCCAGAGGCCACTGCTATCGGAGTTCGATTAAGCCATGCGAGTC GAGAGGTGTA
NC_021313.1                  50  1.17e-33 ACGGAGGCGA CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGGGTCCGATTTAGCCATGCTAGTC GCACGAGTTC
NC_015954.1                  50  3.17e-33 TTGCACGTAT CATTCCGGTTGATCCTGCCGGAGGTCATTGCTATCGGGGTTCGATTTAGCCATGCTAGTC GTGCGAGTTC
NC_007796.1                  49  3.17e-33 GAAAAATAGA AATTCTGGTTGATCCTGCCAGAGGCCACTGCTATCGGGGTTTGACTAAGCCATGCGAGTC GAGAGGTGCA
NC_013202.1                  50  5.09e-33 CTGCAGGGGA CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTC GCGCGGGTTT
NC_013201.1                  50  5.09e-33 TATGTCAGCA CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTC GCACGGGCTT
NC_008212.2                  50  5.09e-33 CGAGGAATCC CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTC GTGCGAGTTC
NC_002607.1                  49  5.09e-33 CATCCCAGCA AATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTT GTGCGGGTTT
NC_015416.1                  46  2.16e-32 CTTCCTAGAG AATTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGAGGTTCGACTAAGCCATGCGAGTC GAATGTAGCA
NC_014729.1                  47  2.47e-32 GCCAGGAACC CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTT GCACGAGTTC
NC_007426.1                  49  2.83e-32 TCGGGGAATA CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGTGTCCGATTTAGCCATGCGAGTT GTACGTTTAC
NC_013926.1                  47  3.69e-32 TAGGCGGATC AACTCCGGTTGATCCTGCCGGAGGCCACTGCTATCGGGCTCCGACTAAGCCATGCGAGTT TAGGGGCTCC
NC_012028.1                  49  4.20e-32 GGAGGTTATA CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATTGGGATTCGATTTAGCCATGCTAGTC GCACGAGTTC
NC_008942.1                  47  4.20e-32 AAAAAATAGT AATTCTGGTTGATCCTGCCAGAGGCCATTGCTATCAGGGTTTGACTAAGCCATGCGAGTC GAGAGGTGTA
NC_007955.1                  50  5.42e-32 TTTAACAACA AACTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGGTGTTCGACTAAGCCATGCGAGTC ATATGTTCTT
NC_017527.1                  49  3.56e-31 ATACTTCCAT AATTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGAGATTCGACTAAGCCATGCGAGTT GAATGTTCTT
NC_007355.1                  50  1.66e-30 ATACATTAAC AATTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGGTGTTCGTCTAAGCCATGCGAGTT ATATGTTCTT
NC_021592.1                  50  2.02e-30 AGGTAGGATT AACTCCGGTTGATCCTGCCGGCGGCCACTGCTATCAAGTTCCGACTAAGCCATGCGAGTC AAGGTATCGT
NC_005877.1                  59  2.02e-30 GACATGGATT AACTCCGGTTGATCCTGCCGGCGGCCACTGCTATCAAGTTCCGACTAAGCCATGCGAGTC AAGGGGCCGT
NC_014253.1                  47  4.62e-30 TTTCATCTAA AATTCTGGTTGATCCTGCCAGAGATCACTGCTATCAGTGTCCGATTAAGCCATGCAAGTT ATATGTTCTT
NC_015216.1                  49  5.05e-30 CTGGATTTTT AAATCCGTTTGATCCTGGCGGAGGCCACTGCTATTGGGGTCCGATTAAGCCATGCAAGTC GAACGAAACT
NC_002578.1                  50  4.76e-29 TGAGTGTTTT AACTCCGGTCGATCCTGCCGGCGGTCACTGCTATCAGGTTCCGACTAAGCCATGCAAGTC ATGGGGCCGT
NC_009515.2                  49  5.12e-29 TTTTTCATTC AATTCTGTTTGATCCTGGCAGATGCTACTGCTATTGGGATTCGATTAAGCCATGCAAGTC GAACGAGTTT
NC_013849.1                  49  1.27e-28 CTCCCCCGCC AATTCTGGTTGATCCTGCCAGAGGCCGCTGCTATCCGGCTGGGACTAAGCCATGCGAGTC ATGGGGCGCA
NC_007681.1                  60  2.14e-28 AATAGTGTGT AAATCCGTTTGATCCTGGCGGAAGCTACTGCTATTGGGATTCGATTAAGCCATGCAAGTC GAATGAACCT
NC_017461.1                  50  2.59e-28 CTTGCGGCCG AACTCCGGTTGATCCTGCCGGACCCGACTGCTATCGGGGTGGCACTAAGCCATGGGAGTC GCACATCCCA
NC_020892.1                  49  2.93e-28 AATAAGATTT GACTCCGGTTGATCCTGCCGGCGGCCACCGCTATTGGAATTCGATTAAGACATGCGAGTC TAGAGAGCAA
NC_014205.1                  50  4.50e-28 TTGCGGCCGC AACTCCGGTTGATCCTGCCGGACCCGACCGCTATCGGGGTGGGGCTAAGCCATGGGAGTC GTACGCTCCG
NC_015518.1                  49  2.24e-27 TCCTGCTCCC AATTCCGGTTGATCCTGCCGGACCCGACCGCTATGGGGGTAGGGCTAAGCCATGGGAGTC GTACGCCCTC
NC_009440.1                  50  2.37e-27 TAGCTGCCCT AATTCCGGTTGATCCTGCCGGACCCGATCGCTATAGGGGTAGGGCTAAGCCATGGGAGTC GTACGCTCTC
NC_022093.1                  58  2.19e-26 CACGCGGCCA GACTCCGGTTGATCCTGCCGGACCCGACCGCTATCGGGGTGGGGCTAACCCATGGAAGTC TAGGAGCCGG
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_000909.2                       6.8e-36  48_[+9]_1469
NC_014507.1                       1.1e-34  48_[+9]_1459
NC_009712.1                       1.4e-34  47_[+9]_1458
NC_021313.1                       1.2e-33  49_[+9]_1461
NC_015954.1                       3.2e-33  49_[+9]_1463
NC_007796.1                       3.2e-33  48_[+9]_1457
NC_013202.1                       5.1e-33  49_[+9]_1463
NC_013201.1                       5.1e-33  49_[+9]_1462
NC_008212.2                       5.1e-33  49_[+9]_1463
NC_002607.1                       5.1e-33  48_[+9]_1464
NC_015416.1                       2.2e-32  45_[+9]_1462
NC_014729.1                       2.5e-32  46_[+9]_1472
NC_007426.1                       2.8e-32  48_[+9]_1457
NC_013926.1                       3.7e-32  46_[+9]_1466
NC_012028.1                       4.2e-32  48_[+9]_1461
NC_008942.1                       4.2e-32  46_[+9]_1458
NC_007955.1                       5.4e-32  49_[+9]_1466
NC_017527.1                       3.6e-31  48_[+9]_1466
NC_007355.1                       1.7e-30  49_[+9]_1468
NC_021592.1                         2e-30  49_[+9]_1461
NC_005877.1                         2e-30  58_[+9]_1450
NC_014253.1                       4.6e-30  46_[+9]_1470
NC_015216.1                         5e-30  48_[+9]_1476
NC_002578.1                       4.8e-29  49_[+9]_1461
NC_009515.2                       5.1e-29  48_[+9]_1467
NC_013849.1                       1.3e-28  48_[+9]_1502
NC_007681.1                       2.1e-28  59_[+9]_1470
NC_017461.1                       2.6e-28  49_[+9]_1492
NC_020892.1                       2.9e-28  48_[+9]_1456
NC_014205.1                       4.5e-28  49_[+9]_1501
NC_015518.1                       2.2e-27  48_[+9]_1490
NC_009440.1                       2.4e-27  49_[+9]_1497
NC_022093.1                       2.2e-26  57_[+9]_1495
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 9 width=60 seqs=33
NC_000909.2              (   49) AATTCCGGTTGATCCTGCCGGAGGCCACTGCTATCGGGGTCCGACTAAGCCATGCGAGTC  1 
NC_014507.1              (   49) AATTCTGGTTGATCCTGCCAGAGGTCACTGCTATCGGGGTTCGATTAAGCCATGCGAGTC  1 
NC_009712.1              (   48) AATTCTGGTTGATCCTGCCAGAGGCCACTGCTATCGGAGTTCGATTAAGCCATGCGAGTC  1 
NC_021313.1              (   50) CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGGGTCCGATTTAGCCATGCTAGTC  1 
NC_015954.1              (   50) CATTCCGGTTGATCCTGCCGGAGGTCATTGCTATCGGGGTTCGATTTAGCCATGCTAGTC  1 
NC_007796.1              (   49) AATTCTGGTTGATCCTGCCAGAGGCCACTGCTATCGGGGTTTGACTAAGCCATGCGAGTC  1 
NC_013202.1              (   50) CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTC  1 
NC_013201.1              (   50) CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTC  1 
NC_008212.2              (   50) CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTC  1 
NC_002607.1              (   49) AATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTT  1 
NC_015416.1              (   46) AATTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGAGGTTCGACTAAGCCATGCGAGTC  1 
NC_014729.1              (   47) CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTT  1 
NC_007426.1              (   49) CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGTGTCCGATTTAGCCATGCGAGTT  1 
NC_013926.1              (   47) AACTCCGGTTGATCCTGCCGGAGGCCACTGCTATCGGGCTCCGACTAAGCCATGCGAGTT  1 
NC_012028.1              (   49) CATTCCGGTTGATCCTGCCGGAGGCCATTGCTATTGGGATTCGATTTAGCCATGCTAGTC  1 
NC_008942.1              (   47) AATTCTGGTTGATCCTGCCAGAGGCCATTGCTATCAGGGTTTGACTAAGCCATGCGAGTC  1 
NC_007955.1              (   50) AACTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGGTGTTCGACTAAGCCATGCGAGTC  1 
NC_017527.1              (   49) AATTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGAGATTCGACTAAGCCATGCGAGTT  1 
NC_007355.1              (   50) AATTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGGTGTTCGTCTAAGCCATGCGAGTT  1 
NC_021592.1              (   50) AACTCCGGTTGATCCTGCCGGCGGCCACTGCTATCAAGTTCCGACTAAGCCATGCGAGTC  1 
NC_005877.1              (   59) AACTCCGGTTGATCCTGCCGGCGGCCACTGCTATCAAGTTCCGACTAAGCCATGCGAGTC  1 
NC_014253.1              (   47) AATTCTGGTTGATCCTGCCAGAGATCACTGCTATCAGTGTCCGATTAAGCCATGCAAGTT  1 
NC_015216.1              (   49) AAATCCGTTTGATCCTGGCGGAGGCCACTGCTATTGGGGTCCGATTAAGCCATGCAAGTC  1 
NC_002578.1              (   50) AACTCCGGTCGATCCTGCCGGCGGTCACTGCTATCAGGTTCCGACTAAGCCATGCAAGTC  1 
NC_009515.2              (   49) AATTCTGTTTGATCCTGGCAGATGCTACTGCTATTGGGATTCGATTAAGCCATGCAAGTC  1 
NC_013849.1              (   49) AATTCTGGTTGATCCTGCCAGAGGCCGCTGCTATCCGGCTGGGACTAAGCCATGCGAGTC  1 
NC_007681.1              (   60) AAATCCGTTTGATCCTGGCGGAAGCTACTGCTATTGGGATTCGATTAAGCCATGCAAGTC  1 
NC_017461.1              (   50) AACTCCGGTTGATCCTGCCGGACCCGACTGCTATCGGGGTGGCACTAAGCCATGGGAGTC  1 
NC_020892.1              (   49) GACTCCGGTTGATCCTGCCGGCGGCCACCGCTATTGGAATTCGATTAAGACATGCGAGTC  1 
NC_014205.1              (   50) AACTCCGGTTGATCCTGCCGGACCCGACCGCTATCGGGGTGGGGCTAAGCCATGGGAGTC  1 
NC_015518.1              (   49) AATTCCGGTTGATCCTGCCGGACCCGACCGCTATGGGGGTAGGGCTAAGCCATGGGAGTC  1 
NC_009440.1              (   50) AATTCCGGTTGATCCTGCCGGACCCGATCGCTATAGGGGTAGGGCTAAGCCATGGGAGTC  1 
NC_022093.1              (   58) GACTCCGGTTGATCCTGCCGGACCCGACCGCTATCGGGGTGGGGCTAACCCATGGAAGTC  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 12.3203 E= 4.5e-712 
   156     -7   -239  -1169 
   208  -1169  -1169  -1169 
  -196     10  -1169    180 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
 -1169    139  -1169     80 
 -1169  -1169    165  -1169 
 -1169  -1169    151   -108 
 -1169  -1169  -1169    238 
 -1169   -306  -1169    234 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    184   -181  -1169 
 -1169    198  -1169  -1169 
    50  -1169    107  -1169 
 -1169  -1169    165  -1169 
   190   -107  -1169  -1169 
  -296    -75    131   -266 
  -296    -75    136  -1169 
 -1169    158  -1169     34 
 -1169    139   -107     -8 
   204  -1169   -339  -1169 
 -1169    139  -1169     80 
 -1169    -75  -1169    214 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
  -296    163   -339    -34 
   -64   -306    136  -1169 
   -96  -1169    147  -1169 
   -15  -1169    107    -66 
   -64   -207    113   -108 
 -1169  -1169  -1169    238 
  -196     74   -139    104 
 -1169    158    -81   -166 
 -1169   -306    161  -1169 
   185  -1169   -139   -266 
 -1169    102  -1169    134 
 -1169  -1169  -1169    238 
   162  -1169  -1169     51 
   208  -1169  -1169  -1169 
 -1169   -306    161  -1169 
  -296    193  -1169  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    174   -107  -1169 
   -38  -1169     86     34 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
 -1169    163  -1169     14 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 4.5e-712 
 0.696970  0.242424  0.060606  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.060606  0.272727  0.000000  0.666667 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.666667  0.000000  0.333333 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.909091  0.090909 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.030303  0.000000  0.969697 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.909091  0.090909  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.333333  0.000000  0.666667  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.878788  0.121212  0.000000  0.000000 
 0.030303  0.151515  0.787879  0.030303 
 0.030303  0.151515  0.818182  0.000000 
 0.000000  0.757576  0.000000  0.242424 
 0.000000  0.666667  0.151515  0.181818 
 0.969697  0.000000  0.030303  0.000000 
 0.000000  0.666667  0.000000  0.333333 
 0.000000  0.151515  0.000000  0.848485 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.030303  0.787879  0.030303  0.151515 
 0.151515  0.030303  0.818182  0.000000 
 0.121212  0.000000  0.878788  0.000000 
 0.212121  0.000000  0.666667  0.121212 
 0.151515  0.060606  0.696970  0.090909 
 0.000000  0.000000  0.000000  1.000000 
 0.060606  0.424242  0.121212  0.393939 
 0.000000  0.757576  0.181818  0.060606 
 0.000000  0.030303  0.969697  0.000000 
 0.848485  0.000000  0.121212  0.030303 
 0.000000  0.515152  0.000000  0.484848 
 0.000000  0.000000  0.000000  1.000000 
 0.727273  0.000000  0.000000  0.272727 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.030303  0.969697  0.000000 
 0.030303  0.969697  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.848485  0.151515  0.000000 
 0.181818  0.000000  0.575758  0.242424 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.787879  0.000000  0.212121 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 9 regular expression
--------------------------------------------------------------------------------
[AC]A[TC]TC[CT]GGTTGATCCTGCC[GA]GAGG[CT]CA[CT]TGCTATCGG[GA]GT[CT]CGA[CT]T[AT]AGCCATGC[GT]AGT[CT]
--------------------------------------------------------------------------------




Time 179.57 secs.

********************************************************************************


********************************************************************************
MOTIF 10 MEME	width =  60  sites =  33  llr = 2138  E-value = 7.1e-690
********************************************************************************
--------------------------------------------------------------------------------
	Motif 10 Description
--------------------------------------------------------------------------------
Simplified        A  ::a::aa:a:::::5:aa2::7::::232:7112:2a:a9:::::::aaa:::52:4:aa
pos.-specific     C  :9:::::a:a::::45::69::aaa:32:::431:2:::18859::::::a:::::5:::
probability       G  :1:a::::::a:aa::::1::3::::248a:45796::::::::aaa:::::a58a1:::
matrix            T  a:::a::::::a::15::11a::::a32::311::::a::2251:::::::a::::1a::

         bits    2.4 *   *               *                              *        
                 2.1 * * *** *  *    **  *    *          ***        *** *     ***
                 1.9 * * ****** *    **  *  ***          ***        *****     ***
                 1.7 * ************  **  * ****   *      ***    **********    ***
Relative         1.4 **************  ** ** ****   *      ****   **********  * ***
Entropy          1.2 ************** *** ** ****   **   * *****************  * ***
(93.5 bits)      1.0 ************** *** *******  ***   * ******************** ***
                 0.7 ****************** *******  ***   * ******************** ***
                 0.5 **************************  ***  ** ************************
                 0.2 *************************** ********************************
                 0.0 ------------------------------------------------------------

Multilevel           TCAGTAACACGTGGATAACCTACCCTTGGGACGGGGATAACCCCGGGAAACTGGGGCTAA
consensus                          CC  A  G    CAA TGCA C      T          A  A   
sequence                                       A                                 
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_013849.1                 153  1.69e-33 GGCGGACGGC TCAGTAACACGTGGACAACCTACCCTCGGGAGGGGGATAACCCCGGGAAACTGGGGCTAA ACCCCCATAG
NC_013926.1                 139  2.17e-33 GGCGGACGGC TCAGTAACACGTGGACAACCTACCCTCGGGTGGGGGATAACCTCGGGAAACTGAGGCTAA TACCCCATAG
NC_000909.2                 143  2.17e-33 GGCGCACGGC TCAGTAACACGTGGCTAACCTACCCTCGGGTGGGGGATAACCTCGGGAAACTGAGGCTAA TCCCCCATAG
NC_022093.1                 154  3.55e-33 GGCGGACGGC TCAGTAACACGTGGCTAACCTACCCTCGGGAGGGGGATAACCCCGGGAAACTGGGGATAA TCCCCCATAG
NC_014253.1                 136  8.75e-33 GGCGAACTGC TCAGTAACACGTGGATAACCTGCCCTTGGGACCGGGATAACCCCGGGAAACTGGGGATAA TACCGGATGA
NC_009712.1                 135  1.06e-31 GGCATACTGC TCAGTAACACGTGGACAACCTACCCTGAAGAGGGGGATAACCCCGGGAAACTGGGGATAA TACCCCATAG
NC_009515.2                 137  1.23e-31 GGCGTACGGC TCAGTAACACGTGGATAACCTACCCTTAGGACTGGGATAACCCTGGGAAACTGGGGATAA TACTGGATAG
NC_007355.1                 139  1.23e-31 GGCGTACTGC TCAGTAACACGTGGATAACCTGCCCTTGGGTCCGGCATAACCCCGGGAAACTGGGGATAA TACCGGATAA
NC_013202.1                 138  1.43e-31 GGCAGATAGC TCAGTAACACGTGGCCAAACTACCCTATGGACGGGAATAACCTCGGGAAACTGAGGCTAA TCCCCGATAC
NC_014507.1                 137  2.92e-31 GGCGGACTGC TCAGTAACACGTGGATAACCTGCCCTAAGGTGGAGGATAACCCCGGGAAACTGGGGATAA TACTCCATAG
NC_007426.1                 132  9.29e-31 AGCAAACTGC TCAGTAACACGTGGCCAAACTGCCCTATGGACCGGAATAACCTCGGGAAACTGAGGCTAA TTCCGGATAC
NC_021313.1                 138  1.33e-30 GGCGGAAAGC TCAGTAACACGTGGCCAAACTACCCTGTGGACCAGCATAACCTCGGGAAACTGAGGCTAA TTCTGGATAA
NC_015216.1                 143  1.33e-30 GGCAAACGGC TCAGTAACACGTGGATAACCTACCCTTAGGACTGGGATAACCCCGGGAAACTGGGGACAA TACCAGATAT
NC_017527.1                 138  6.68e-30 GGCGGACTGC TCAGTAACACGTGGACAACCTACCCTTGGGTCTGGCATAATCCTGGGAAACTGGGGATAA TTCCGGATAG
NC_017461.1                 144  8.97e-30 GGCGCACGGC TGAGTAACACGTGGCTAACCTACCCTCGGGATGGGGATAACTCCGGGAAACTGGAGCTAA TACCCAATAA
NC_007681.1                 147  1.09e-29 GGCATACGGC TCAGTAACACGTGGATAACTTACCCTTAGGACCGGGATAACTTTGGGAAACTGAAGATAA TACTGGATAT
NC_013201.1                 138  1.44e-29 GGCGTATAGC TCAGTAACACGTGGCCAAACTACCCTATAGACCATGATAACCTCGGGAAACTGAGGCTAA TCGTGGATAT
NC_007955.1                 139  1.73e-29 GGCGGACTGC TCAGTAACACGTGGATAACCTGCCCTTAGGTTTGGCATAACTCCGGGAAACTGGAGATAA TTCCGAATAG
NC_009440.1                 143  2.07e-29 GGCGGACGGC TGAGTAACACGTGGCTAACCTGCCCTTGGGATCTGGATAACCCCGGGAAACTGGGGCTAA TCCGGAGCGG
NC_002578.1                 138  2.26e-29 GGCGAACAGC TCAGTAACACGTGGATAATTTACCCTCAGGCGGGGCATAACCTCGGGAAACTGAGGCTAA TTCCCCATAG
NC_005877.1                 147  2.70e-29 GGCGTACCGC TCAGTAACACGCGGATAATCTACCCTCGGGAAGGGCATAACCTCGGGAAACTGAGGCTAA TTCCCTATAG
NC_015954.1                 138  6.74e-29 GGCGTATAGC TCAGTAACACGTGGCCAAACTACCCACCAGACAGGAATAACCTCGGGAAACTGAGGCTAA TGCCTGATAC
NC_002607.1                 137  7.30e-29 AGCGGAAAGC TCAGTAACACGTGGCCAAGCTACCCTGTGGACGGGAATACTCTCGGGAAACTGAGGCTAA TCCCCGATAA
NC_014205.1                 144  9.23e-29 GGCGGACGGC TGAGTAACACGTGGCTAACCTACCCTCGGGAGGGGGATAACACCGGGAAACTGGTGCTAA TCCCCCATAG
NC_015518.1                 143  1.35e-28 GGCGGACGGC TGAGTAACACGTGGCTAACTTACCCTCGGGACCCGGATAACTCCGGGAAACTGGAGCTAA TCCGGGGCAG
NC_007796.1                 136  1.35e-28 GGCGTACTGC TCAGTAACACGTGGACAATCTGCCCTGAAGAGGAGGATAATCCCGGGAAACTGGGGGTAA TACTCCATAG
NC_008942.1                 134  1.56e-28 GGCATACTGC TCAGTAACACGTGGTTAACCTGCCCTAAGGTGGAGAATACTCCCGGGAAACTGGGGCTAA TGCTCCATAG
NC_012028.1                 137  2.24e-28 GGCGAATAGC TCAGTAACACGTGGCCAAACTACCCTTCGGAGCACGATACCCTCGGGAAACTGAGGTTAA TAGTGCATAC
NC_008212.2                 138  2.24e-28 GGCACCGAGC TCAGTAACACGTGGCCAAACTACCCTACAGAGACGGATACCCTCGGGAAACTGAGGTTAA CCCGTCATAC
NC_020892.1                 133  3.40e-28 GGCGGACTGC TCAGTAACACGTGGACAACGTGCCCTACAGTGGAGCATAATCTCGGGAAACTGAGGATAA TTCTCCATAG
NC_015416.1                 132  6.16e-28 GGCGAACTGC TCAGTAACACGTGGACAACCTGCCCTTAGGTTGGGTATAAACCCGGGAAACTGGGTATAA TACCCGATAG
NC_021592.1                 138  1.98e-27 GGCACACTGC TCAGTAACACGTGGATAATCTAACCTTGAGTAAGGGATAACTTCGGGAAACTGAAGGTAA TACCTTATAA
NC_014729.1                 135  2.10e-27 AGCATATAGC TCAGTAACACGTGGTCAAGCTACCCTGCAGACACGGACAACCTCGGGAAACTGAGGCTAA TCCGCGATAC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_013849.1                       1.7e-33  152_[+10]_1398
NC_013926.1                       2.2e-33  138_[+10]_1374
NC_000909.2                       2.2e-33  142_[+10]_1375
NC_022093.1                       3.5e-33  153_[+10]_1399
NC_014253.1                       8.7e-33  135_[+10]_1381
NC_009712.1                       1.1e-31  134_[+10]_1371
NC_009515.2                       1.2e-31  136_[+10]_1379
NC_007355.1                       1.2e-31  138_[+10]_1379
NC_013202.1                       1.4e-31  137_[+10]_1375
NC_014507.1                       2.9e-31  136_[+10]_1371
NC_007426.1                       9.3e-31  131_[+10]_1374
NC_021313.1                       1.3e-30  137_[+10]_1373
NC_015216.1                       1.3e-30  142_[+10]_1382
NC_017527.1                       6.7e-30  137_[+10]_1377
NC_017461.1                         9e-30  143_[+10]_1398
NC_007681.1                       1.1e-29  146_[+10]_1383
NC_013201.1                       1.4e-29  137_[+10]_1374
NC_007955.1                       1.7e-29  138_[+10]_1377
NC_009440.1                       2.1e-29  142_[+10]_1404
NC_002578.1                       2.3e-29  137_[+10]_1373
NC_005877.1                       2.7e-29  146_[+10]_1362
NC_015954.1                       6.7e-29  137_[+10]_1375
NC_002607.1                       7.3e-29  136_[+10]_1376
NC_014205.1                       9.2e-29  143_[+10]_1407
NC_015518.1                       1.3e-28  142_[+10]_1396
NC_007796.1                       1.3e-28  135_[+10]_1370
NC_008942.1                       1.6e-28  133_[+10]_1371
NC_012028.1                       2.2e-28  136_[+10]_1373
NC_008212.2                       2.2e-28  137_[+10]_1375
NC_020892.1                       3.4e-28  132_[+10]_1372
NC_015416.1                       6.2e-28  131_[+10]_1376
NC_021592.1                         2e-27  137_[+10]_1373
NC_014729.1                       2.1e-27  134_[+10]_1384
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 10 width=60 seqs=33
NC_013849.1              (  153) TCAGTAACACGTGGACAACCTACCCTCGGGAGGGGGATAACCCCGGGAAACTGGGGCTAA  1 
NC_013926.1              (  139) TCAGTAACACGTGGACAACCTACCCTCGGGTGGGGGATAACCTCGGGAAACTGAGGCTAA  1 
NC_000909.2              (  143) TCAGTAACACGTGGCTAACCTACCCTCGGGTGGGGGATAACCTCGGGAAACTGAGGCTAA  1 
NC_022093.1              (  154) TCAGTAACACGTGGCTAACCTACCCTCGGGAGGGGGATAACCCCGGGAAACTGGGGATAA  1 
NC_014253.1              (  136) TCAGTAACACGTGGATAACCTGCCCTTGGGACCGGGATAACCCCGGGAAACTGGGGATAA  1 
NC_009712.1              (  135) TCAGTAACACGTGGACAACCTACCCTGAAGAGGGGGATAACCCCGGGAAACTGGGGATAA  1 
NC_009515.2              (  137) TCAGTAACACGTGGATAACCTACCCTTAGGACTGGGATAACCCTGGGAAACTGGGGATAA  1 
NC_007355.1              (  139) TCAGTAACACGTGGATAACCTGCCCTTGGGTCCGGCATAACCCCGGGAAACTGGGGATAA  1 
NC_013202.1              (  138) TCAGTAACACGTGGCCAAACTACCCTATGGACGGGAATAACCTCGGGAAACTGAGGCTAA  1 
NC_014507.1              (  137) TCAGTAACACGTGGATAACCTGCCCTAAGGTGGAGGATAACCCCGGGAAACTGGGGATAA  1 
NC_007426.1              (  132) TCAGTAACACGTGGCCAAACTGCCCTATGGACCGGAATAACCTCGGGAAACTGAGGCTAA  1 
NC_021313.1              (  138) TCAGTAACACGTGGCCAAACTACCCTGTGGACCAGCATAACCTCGGGAAACTGAGGCTAA  1 
NC_015216.1              (  143) TCAGTAACACGTGGATAACCTACCCTTAGGACTGGGATAACCCCGGGAAACTGGGGACAA  1 
NC_017527.1              (  138) TCAGTAACACGTGGACAACCTACCCTTGGGTCTGGCATAATCCTGGGAAACTGGGGATAA  1 
NC_017461.1              (  144) TGAGTAACACGTGGCTAACCTACCCTCGGGATGGGGATAACTCCGGGAAACTGGAGCTAA  1 
NC_007681.1              (  147) TCAGTAACACGTGGATAACTTACCCTTAGGACCGGGATAACTTTGGGAAACTGAAGATAA  1 
NC_013201.1              (  138) TCAGTAACACGTGGCCAAACTACCCTATAGACCATGATAACCTCGGGAAACTGAGGCTAA  1 
NC_007955.1              (  139) TCAGTAACACGTGGATAACCTGCCCTTAGGTTTGGCATAACTCCGGGAAACTGGAGATAA  1 
NC_009440.1              (  143) TGAGTAACACGTGGCTAACCTGCCCTTGGGATCTGGATAACCCCGGGAAACTGGGGCTAA  1 
NC_002578.1              (  138) TCAGTAACACGTGGATAATTTACCCTCAGGCGGGGCATAACCTCGGGAAACTGAGGCTAA  1 
NC_005877.1              (  147) TCAGTAACACGCGGATAATCTACCCTCGGGAAGGGCATAACCTCGGGAAACTGAGGCTAA  1 
NC_015954.1              (  138) TCAGTAACACGTGGCCAAACTACCCACCAGACAGGAATAACCTCGGGAAACTGAGGCTAA  1 
NC_002607.1              (  137) TCAGTAACACGTGGCCAAGCTACCCTGTGGACGGGAATACTCTCGGGAAACTGAGGCTAA  1 
NC_014205.1              (  144) TGAGTAACACGTGGCTAACCTACCCTCGGGAGGGGGATAACACCGGGAAACTGGTGCTAA  1 
NC_015518.1              (  143) TGAGTAACACGTGGCTAACTTACCCTCGGGACCCGGATAACTCCGGGAAACTGGAGCTAA  1 
NC_007796.1              (  136) TCAGTAACACGTGGACAATCTGCCCTGAAGAGGAGGATAATCCCGGGAAACTGGGGGTAA  1 
NC_008942.1              (  134) TCAGTAACACGTGGTTAACCTGCCCTAAGGTGGAGAATACTCCCGGGAAACTGGGGCTAA  1 
NC_012028.1              (  137) TCAGTAACACGTGGCCAAACTACCCTTCGGAGCACGATACCCTCGGGAAACTGAGGTTAA  1 
NC_008212.2              (  138) TCAGTAACACGTGGCCAAACTACCCTACAGAGACGGATACCCTCGGGAAACTGAGGTTAA  1 
NC_020892.1              (  133) TCAGTAACACGTGGACAACGTGCCCTACAGTGGAGCATAATCTCGGGAAACTGAGGATAA  1 
NC_015416.1              (  132) TCAGTAACACGTGGACAACCTGCCCTTAGGTTGGGTATAAACCCGGGAAACTGGGTATAA  1 
NC_021592.1              (  138) TCAGTAACACGTGGATAATCTAACCTTGAGTAAGGGATAACTTCGGGAAACTGAAGGTAA  1 
NC_014729.1              (  135) TCAGTAACACGTGGTCAAGCTACCCTGCAGACACGGACAACCTCGGGAAACTGAGGCTAA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 7.1e-690 
 -1169  -1169  -1169    238 
 -1169    179   -139  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169   -306  -1169    234 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   113     74  -1169   -166 
 -1169     93  -1169    142 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   -15    125   -239    -66 
 -1169    179   -339   -108 
 -1169  -1169  -1169    238 
   156  -1169     -7  -1169 
  -296    193  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
  -296  -1169  -1169    234 
   -15     25   -107     80 
    36    -75     31    -34 
     4  -1169    125  -1169 
 -1169  -1169    165  -1169 
   150   -306  -1169     66 
  -196     74     31    -66 
   -96     10     61    -66 
   -15   -148    107   -266 
 -1169   -306    156   -266 
   -64    -26     93   -266 
   208  -1169  -1169  -1169 
 -1169   -306  -1169    234 
   208  -1169  -1169  -1169 
   190   -107  -1169  -1169 
  -296    169  -1169    -34 
  -296    169  -1169    -34 
 -1169    102  -1169    134 
 -1169    184  -1169   -108 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
   104  -1169     70  -1169 
   -64  -1169    136   -266 
 -1169  -1169    161   -266 
    62    102   -239   -166 
 -1169   -306  -1169    234 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 7.1e-690 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.878788  0.121212  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.030303  0.000000  0.969697 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.515152  0.424242  0.000000  0.060606 
 0.000000  0.484848  0.000000  0.515152 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.212121  0.606061  0.060606  0.121212 
 0.000000  0.878788  0.030303  0.090909 
 0.000000  0.000000  0.000000  1.000000 
 0.696970  0.000000  0.303030  0.000000 
 0.030303  0.969697  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.030303  0.000000  0.000000  0.969697 
 0.212121  0.303030  0.151515  0.333333 
 0.303030  0.151515  0.393939  0.151515 
 0.242424  0.000000  0.757576  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.666667  0.030303  0.000000  0.303030 
 0.060606  0.424242  0.393939  0.121212 
 0.121212  0.272727  0.484848  0.121212 
 0.212121  0.090909  0.666667  0.030303 
 0.000000  0.030303  0.939394  0.030303 
 0.151515  0.212121  0.606061  0.030303 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.030303  0.000000  0.969697 
 1.000000  0.000000  0.000000  0.000000 
 0.878788  0.121212  0.000000  0.000000 
 0.030303  0.818182  0.000000  0.151515 
 0.030303  0.818182  0.000000  0.151515 
 0.000000  0.515152  0.000000  0.484848 
 0.000000  0.909091  0.000000  0.090909 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.484848  0.000000  0.515152  0.000000 
 0.151515  0.000000  0.818182  0.030303 
 0.000000  0.000000  0.969697  0.030303 
 0.363636  0.515152  0.060606  0.060606 
 0.000000  0.030303  0.000000  0.969697 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 10 regular expression
--------------------------------------------------------------------------------
TCAGTAACACGTGG[AC][TC]AA[CA]CT[AG]CCCT[TCA][GA][GA]G[AT][CG][GC][GA]G[GC]ATAACC[CT]CGGGAAACTG[GA]GG[CA]TAA
--------------------------------------------------------------------------------




Time 193.21 secs.

********************************************************************************


********************************************************************************
MOTIF 11 MEME	width =  60  sites =  33  llr = 2123  E-value = 1.6e-680
********************************************************************************
--------------------------------------------------------------------------------
	Motif 11 Description
--------------------------------------------------------------------------------
Simplified        A  :::a::1:22:1::a::5::2aaa::::219a:::::155::a::8::33:1:::aa4::
pos.-specific     C  1:::a1386::::::::::2:::::9821::::aa51::3:::a9:aa:::::a:::::a
probability       G  9a:::31:18a9a::a95a:8:::::::7:1:::::7943aa::12::47:9a:a::6a:
matrix            T  ::a::7521::::a:::::8::::a:28:9::a::52:1:::::::::3:a1::::::::

         bits    2.4   *          *          *       *                 *         
                 2.1   **         **      ****    * **         *       *    **   
                 1.9   ***        **      ****    * ****       **  **  *  * **  *
                 1.7  ****     * ****  ** *****   * ****     ****  **  * ***** **
Relative         1.4  ****  *  ******  ** ******  ******     ********  * ***** **
Entropy          1.2 *****  * ******** ********** ******* *  ********  * ***** **
(92.8 bits)      1.0 ****** * ******************* ******* *  ******** ***********
                 0.7 ****** * ******************* ******* *  ******** ***********
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           GGTACTTCCGGGGTAGGGGTGAAATCCTGTAATCCTGGAAGGACCACCGGTGGCGAAGGC
consensus                 GC A        A                 CT GC        AA       A  
sequence                                                    G        T           
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 11 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_015416.1                 654  2.33e-32 AGAGGTGAGA GGTACTTCAGGGGTAGGGGTGAAATCTTGTAATCCTTGAAGGACCACCAGTGGCGAAGGC GTCTCACCAG
NC_007681.1                 671  4.41e-32 AGAGGTTAGA GGTACTACCGGGGTAGGGGTGAAATCCTATAATCCTGGGAGGACCACCTGTGGCGAAGGC GTCTAACTGG
NC_009712.1                 653  5.97e-32 AGAGGTGAGA GGTACTCCAGGGGTAGGAGTGAAATCCTGTAATCCTTGGGGGACCACCTGTGGCGAAGGC GTCTCACCAG
NC_015216.1                 666  9.28e-32 AGAGGTTAGG GGTACTCCCAGGGTAGGGGTGAAATCCTATAATCCTGGGAGGACCACCTGTGGCGAAGGC GCCTAACTGG
NC_020892.1                 654  1.07e-31 AGAGGTAAGA GGTACTTCAGGGGTAGGGGTAAAATCCTGTAATCCTTGGAGGACCACCGGTGGCGAAGGC GTCTTACTAG
NC_013926.1                 660  1.07e-31 AGAGGCCGGA GGTACTCCCGGGGTAGGGGTAAAATCCTGTAATCCCGGGGGGACCACCTGTGGCGAAAGC GTCCGGCTTG
NC_013201.1                 663  1.63e-31 AGACTCAGCG GGTACGTCTGGGGTAGGAGTGAAATCCTGTAATCCTGGACGGACCACCAATGGCGAAAGC ACGCTGAGAA
NC_007426.1                 657  3.63e-31 AGATCCAAGG GGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCACCGATGGCGAAAGC ACCTTGGAAG
NC_012028.1                 661  4.12e-31 AGGCGCGACG GGTACGTCCGGGGTAGGAGTGAAATCCTGTAATCCTGGACGGACCGCCGATGGCGAAAGC ACGTCGCGAG
NC_014205.1                 685  4.68e-31 AGAGGCCGAG GGTACTCCCGGGGTAGGGGCGAAATCCTATAATCCCGGGAGGACCACCAGTGGCGAAGGC GCTCGGCTGG
NC_013849.1                 695  4.68e-31 AGAGGCCGGG GGTATTCCCGGGGTAGGGGTGAAATCCTGTAATCCCGGGAGGACCACCTGTGGCGAAGGC GCCCGGCTGG
NC_014507.1                 655  9.79e-31 AGAGGTAAGA GGTACTTCGGGGGTAGGAGTGAAATCCTGTAATCCTCGAGGGACCACCGATGGCGAAGGC ATCTTACCAG
NC_007796.1                 654  9.79e-31 AGAGGTGAGA GGTACTGCCGGGGTAGGAGTGAAATCCTGTAATCCCGGTGGGACCACCTATGGCGAAGGC ATCTCACCAG
NC_002607.1                 661  1.39e-30 AGACCTGAGG GGTACGTCTGGGGTAGGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGC GCCTCAGGAG
NC_015954.1                 662  2.75e-30 AGGCTCGAGG GGTACGTTCGGGGTAGGAGTGAAATCCTGTAATCCTGAACGGACCACCGATGGCGAAAGC ACCTCGAGAG
NC_013202.1                 662  3.07e-30 AGATCTGAGG GGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCACCGGTAGCGAAAGC GCCTCAGAAA
NC_021313.1                 662  3.42e-30 AGATCCAGGG GGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCCGGACGGACCGCCGGTGGCGAAAGC GCCCTGGAAG
NC_007355.1                 664  3.81e-30 AGAGGTAAGA GGTACTACAGGGGTAGGAGTGAAATCTTGTAATCCCTGTGGGACCACCTGTGGCGAAGGC GTCTTACCAG
NC_014729.1                 659  4.24e-30 AGGCTCGAGG GGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCGCCGATGGCGAAAGC ACCTCGAGAA
NC_007955.1                 662  4.24e-30 AGAGGTAAGA GGTACTACAGGGGTAGGAGTGAAATCTTGTAATCCCTGTGGGACCACCAGTGGCGAAGGC GTCTTACCAG
NC_014253.1                 659  1.91e-29 AGAGGTAAGA GGTACTACAGGGGTAGGAGTGAAATCTTGTAATCCCTGTAGGACCACCAGTTGCGAAGGC GTCTTACCAG
NC_021592.1                 658  3.05e-29 TGAGGTTAAA CGTACTTTCAGGGTAGGGGTAAAATCCTGTAATCCCGGAAGGACGACCAGTGGCGAAAGC GTTTAACTAG
NC_017461.1                 686  4.37e-29 AGAGGCCGGG GGTACTGCCGGGGTAGGGGCGAAATCCTATAATCCCGGCAGGACCACCAGTGGCGAAGGC GCCCGGCTGG
NC_022093.1                 693  5.69e-29 AGAGGCCGGG GGTACTCCTGGGGTAGGGGCGAAATCCTATAATCCCAGGAGGACCACCAGTGGCGAAGGC GCCCGGCTAG
NC_008942.1                 652  1.55e-28 AGAGGTAAAC CGTACTTCGGGGGTAGGAGTGAAATCTTGTAATCCTCGAGGGACGACCTATGGCGAAGGC AGTTTACCAG
NC_008212.2                 663  1.82e-28 AGGCTCGAAG GGTACGTTCGGGGTAGGAGTGAAATCCCATAATCCCGCACGGACCACCGATGGCGAAAGC ACTTCGAGAA
NC_005877.1                 668  2.12e-28 TGGGGTTGAA CGTACTTTCAGGGTAGGGGTAAAATCCTGTAATCCTGGAAGGACGACCGGTAGCGAAGGC GTTCAACTAG
NC_002578.1                 661  4.20e-28 TGAGGTTGAA TGTACTTTCAGGGTAGGGGTAAAATCCTGTAATCCTGAAAGGACGACCGGTGGCGAAAGC GTTCAACTAG
NC_017527.1                 661  7.47e-28 AGAGGTGAGA GGTACCTTGGGGGTAGGGGTGAAATCTTGTGATCCTCGGGGGACCACCAGTGGCGAAGGC GTCTCACCAG
NC_009515.2                 661  1.13e-27 AGAGGTTAGA GGTACTCCCAGGGTAGAGGTGAAATTCTGTAATCCTGGGAGGACCGCCTGTTGCGAAGGC GTCTGACTGG
NC_009440.1                 680  1.68e-27 AGAGGTCGGA GGTACTCCCGGAGTAGGGGCGAAATCCTCAGATCCCGGGAGGACCACCAGTGGCGAAAGC GTCCGGCTAG
NC_015518.1                 681  1.47e-26 AGAGGTCGGA GGTACTCCCGGAGTAGGGGCGAAATCCACAGATCCCGGGAGGACCACCAGTGGCGAAAGC GTCCGGCCAG
NC_000909.2                 665  2.67e-25 AGAGGCCGGG GGTACCCCAGGGGTAGCGGTGAAATGCGTTGATCCCTGGGGGACCACCTGTGGCGAAGGC GCCCGGCTGG
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 11 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_015416.1                       2.3e-32  653_[+11]_854
NC_007681.1                       4.4e-32  670_[+11]_859
NC_009712.1                         6e-32  652_[+11]_853
NC_015216.1                       9.3e-32  665_[+11]_859
NC_020892.1                       1.1e-31  653_[+11]_851
NC_013926.1                       1.1e-31  659_[+11]_853
NC_013201.1                       1.6e-31  662_[+11]_849
NC_007426.1                       3.6e-31  656_[+11]_849
NC_012028.1                       4.1e-31  660_[+11]_849
NC_014205.1                       4.7e-31  684_[+11]_866
NC_013849.1                       4.7e-31  694_[+11]_856
NC_014507.1                       9.8e-31  654_[+11]_853
NC_007796.1                       9.8e-31  653_[+11]_852
NC_002607.1                       1.4e-30  660_[+11]_852
NC_015954.1                       2.7e-30  661_[+11]_851
NC_013202.1                       3.1e-30  661_[+11]_851
NC_021313.1                       3.4e-30  661_[+11]_849
NC_007355.1                       3.8e-30  663_[+11]_854
NC_014729.1                       4.2e-30  658_[+11]_860
NC_007955.1                       4.2e-30  661_[+11]_854
NC_014253.1                       1.9e-29  658_[+11]_858
NC_021592.1                         3e-29  657_[+11]_853
NC_017461.1                       4.4e-29  685_[+11]_856
NC_022093.1                       5.7e-29  692_[+11]_860
NC_008942.1                       1.5e-28  651_[+11]_853
NC_008212.2                       1.8e-28  662_[+11]_850
NC_005877.1                       2.1e-28  667_[+11]_841
NC_002578.1                       4.2e-28  660_[+11]_850
NC_017527.1                       7.5e-28  660_[+11]_854
NC_009515.2                       1.1e-27  660_[+11]_855
NC_009440.1                       1.7e-27  679_[+11]_867
NC_015518.1                       1.5e-26  680_[+11]_858
NC_000909.2                       2.7e-25  664_[+11]_853
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 11 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 11 width=60 seqs=33
NC_015416.1              (  654) GGTACTTCAGGGGTAGGGGTGAAATCTTGTAATCCTTGAAGGACCACCAGTGGCGAAGGC  1 
NC_007681.1              (  671) GGTACTACCGGGGTAGGGGTGAAATCCTATAATCCTGGGAGGACCACCTGTGGCGAAGGC  1 
NC_009712.1              (  653) GGTACTCCAGGGGTAGGAGTGAAATCCTGTAATCCTTGGGGGACCACCTGTGGCGAAGGC  1 
NC_015216.1              (  666) GGTACTCCCAGGGTAGGGGTGAAATCCTATAATCCTGGGAGGACCACCTGTGGCGAAGGC  1 
NC_020892.1              (  654) GGTACTTCAGGGGTAGGGGTAAAATCCTGTAATCCTTGGAGGACCACCGGTGGCGAAGGC  1 
NC_013926.1              (  660) GGTACTCCCGGGGTAGGGGTAAAATCCTGTAATCCCGGGGGGACCACCTGTGGCGAAAGC  1 
NC_013201.1              (  663) GGTACGTCTGGGGTAGGAGTGAAATCCTGTAATCCTGGACGGACCACCAATGGCGAAAGC  1 
NC_007426.1              (  657) GGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCACCGATGGCGAAAGC  1 
NC_012028.1              (  661) GGTACGTCCGGGGTAGGAGTGAAATCCTGTAATCCTGGACGGACCGCCGATGGCGAAAGC  1 
NC_014205.1              (  685) GGTACTCCCGGGGTAGGGGCGAAATCCTATAATCCCGGGAGGACCACCAGTGGCGAAGGC  1 
NC_013849.1              (  695) GGTATTCCCGGGGTAGGGGTGAAATCCTGTAATCCCGGGAGGACCACCTGTGGCGAAGGC  1 
NC_014507.1              (  655) GGTACTTCGGGGGTAGGAGTGAAATCCTGTAATCCTCGAGGGACCACCGATGGCGAAGGC  1 
NC_007796.1              (  654) GGTACTGCCGGGGTAGGAGTGAAATCCTGTAATCCCGGTGGGACCACCTATGGCGAAGGC  1 
NC_002607.1              (  661) GGTACGTCTGGGGTAGGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGC  1 
NC_015954.1              (  662) GGTACGTTCGGGGTAGGAGTGAAATCCTGTAATCCTGAACGGACCACCGATGGCGAAAGC  1 
NC_013202.1              (  662) GGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCACCGGTAGCGAAAGC  1 
NC_021313.1              (  662) GGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCCGGACGGACCGCCGGTGGCGAAAGC  1 
NC_007355.1              (  664) GGTACTACAGGGGTAGGAGTGAAATCTTGTAATCCCTGTGGGACCACCTGTGGCGAAGGC  1 
NC_014729.1              (  659) GGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCGCCGATGGCGAAAGC  1 
NC_007955.1              (  662) GGTACTACAGGGGTAGGAGTGAAATCTTGTAATCCCTGTGGGACCACCAGTGGCGAAGGC  1 
NC_014253.1              (  659) GGTACTACAGGGGTAGGAGTGAAATCTTGTAATCCCTGTAGGACCACCAGTTGCGAAGGC  1 
NC_021592.1              (  658) CGTACTTTCAGGGTAGGGGTAAAATCCTGTAATCCCGGAAGGACGACCAGTGGCGAAAGC  1 
NC_017461.1              (  686) GGTACTGCCGGGGTAGGGGCGAAATCCTATAATCCCGGCAGGACCACCAGTGGCGAAGGC  1 
NC_022093.1              (  693) GGTACTCCTGGGGTAGGGGCGAAATCCTATAATCCCAGGAGGACCACCAGTGGCGAAGGC  1 
NC_008942.1              (  652) CGTACTTCGGGGGTAGGAGTGAAATCTTGTAATCCTCGAGGGACGACCTATGGCGAAGGC  1 
NC_008212.2              (  663) GGTACGTTCGGGGTAGGAGTGAAATCCCATAATCCCGCACGGACCACCGATGGCGAAAGC  1 
NC_005877.1              (  668) CGTACTTTCAGGGTAGGGGTAAAATCCTGTAATCCTGGAAGGACGACCGGTAGCGAAGGC  1 
NC_002578.1              (  661) TGTACTTTCAGGGTAGGGGTAAAATCCTGTAATCCTGAAAGGACGACCGGTGGCGAAAGC  1 
NC_017527.1              (  661) GGTACCTTGGGGGTAGGGGTGAAATCTTGTGATCCTCGGGGGACCACCAGTGGCGAAGGC  1 
NC_009515.2              (  661) GGTACTCCCAGGGTAGAGGTGAAATTCTGTAATCCTGGGAGGACCGCCTGTTGCGAAGGC  1 
NC_009440.1              (  680) GGTACTCCCGGAGTAGGGGCGAAATCCTCAGATCCCGGGAGGACCACCAGTGGCGAAAGC  1 
NC_015518.1              (  681) GGTACTCCCGGAGTAGGGGCGAAATCCACAGATCCCGGGAGGACCACCAGTGGCGAAAGC  1 
NC_000909.2              (  665) GGTACCCCAGGGGTAGCGGTGAAATGCGTTGATCCCTGGGGGACCACCTGTGGCGAAGGC  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 11 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 1.6e-680 
 -1169   -148    147   -266 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169    193  -1169   -266 
 -1169   -207    -22    180 
   -96     25   -239    142 
 -1169    169  -1169     -8 
   -15    125   -181   -108 
   -64  -1169    142  -1169 
 -1169  -1169    165  -1169 
  -196  -1169    156  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
  -296   -306    156  -1169 
   104  -1169     70  -1169 
 -1169  -1169    165  -1169 
 -1169    -75  -1169    214 
   -64  -1169    142  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169    189   -339   -266 
 -1169    169  -1169     -8 
  -296    -75   -339    204 
   -38   -207    119   -266 
  -196  -1169  -1169    229 
   190  -1169   -139  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169     84  -1169    151 
  -296   -148    107     14 
  -196   -306    151  -1169 
    95   -306     31    -66 
    95     10    -22  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    179   -139  -1169 
   185  -1169   -107  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
    50  -1169     19     66 
    21  -1169    119  -1169 
 -1169  -1169  -1169    238 
  -196  -1169    147   -166 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
    85  -1169     86  -1169 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 11 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 1.6e-680 
 0.000000  0.090909  0.878788  0.030303 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  0.060606  0.272727  0.666667 
 0.121212  0.303030  0.060606  0.515152 
 0.000000  0.818182  0.000000  0.181818 
 0.212121  0.606061  0.090909  0.090909 
 0.151515  0.000000  0.848485  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.030303  0.939394  0.000000 
 0.484848  0.000000  0.515152  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.151515  0.000000  0.848485 
 0.151515  0.000000  0.848485  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.939394  0.030303  0.030303 
 0.000000  0.818182  0.000000  0.181818 
 0.030303  0.151515  0.030303  0.787879 
 0.181818  0.060606  0.727273  0.030303 
 0.060606  0.000000  0.000000  0.939394 
 0.878788  0.000000  0.121212  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.454545  0.000000  0.545455 
 0.030303  0.090909  0.666667  0.212121 
 0.060606  0.030303  0.909091  0.000000 
 0.454545  0.030303  0.393939  0.121212 
 0.454545  0.272727  0.272727  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.878788  0.121212  0.000000 
 0.848485  0.000000  0.151515  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.333333  0.000000  0.363636  0.303030 
 0.272727  0.000000  0.727273  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.060606  0.000000  0.878788  0.060606 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.424242  0.000000  0.575758  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 11 regular expression
--------------------------------------------------------------------------------
GGTAC[TG][TC]C[CA]GGGGTAGG[GA]GTGAAATCCTGTAATCC[TC][GT]G[AG][ACG]GGACCACC[GAT][GA]TGGCGAA[GA]GC
--------------------------------------------------------------------------------




Time 215.70 secs.

********************************************************************************


********************************************************************************
MOTIF 12 MEME	width =  60  sites =  33  llr = 2096  E-value = 9.3e-670
********************************************************************************
--------------------------------------------------------------------------------
	Motif 12 Description
--------------------------------------------------------------------------------
Simplified        A  a2:::2:aaa:::32:::1a:::1:1a:::7::2:::3aa:::1:::2:7::aa::1::a
pos.-specific     C  ::84872:::9781:5a:2:::17:::13:1:::9::3::a1a:8aa:a:1:::28::::
probability       G  ::::1:2::::::65::6::a::2a9:::a:aa8::a::::::9:::1:3:a::72:aa:
matrix            T  :826126:::132135:38::a9::::97:2:::1a:4:::9::2::7::9:::1:9:::

         bits    2.4                                    *                        
                 2.1 *      **          * *    **       *  **          * **     *
                 1.9 *      ***      *  * **   **       *  *****  ** * * **     *
                 1.7 **     ***      *  * **   ** * ** *** *****  ** * ****  ****
Relative         1.4 ***    ***      *  **** ****** ** *** ***** *** * **** *****
Entropy          1.2 *****  **** *  ** ***** ****** ** *** ********* * **** *****
(91.7 bits)      1.0 *****  ******  ** ***** ************* **************** *****
                 0.7 *************  *********************************************
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           ATCTCCTAAACCCGGCCGTAGTTCGGATTGAGGGCTGTAACTCGCCCTCATGAAGCTGGA
consensus               C  G    TTATT T          C        A           G          
sequence                                                  C                      
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 12 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_015216.1                1281  3.93e-35 GGTGGAGGTA ATCTCCTAAACCTAGTCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCATGAAGCTGGA ATGCGTAGTA
NC_002607.1                1277  1.80e-34 GGAGGCGCTA ATCTCCTAAACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCATGAAGCTGGA TTCGGTAGTA
NC_014729.1                1274  4.95e-33 GAGAACGCTA ATCTCCTAAATCTGGTCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCATGAAGCTGGA TTCGGTAGTA
NC_013202.1                1278  1.33e-32 GGTGGAGCTA ATCCCCTAAACTCGGTCGTAGTTCGGATTGTGGGCTGAAACTCGCCCACATGAAGCTGGA TTCGGTAGTA
NC_009712.1                1266  1.55e-32 GGTGAAGGCA ATCTCCTAAACCCATCCTTAGTTCGGATTGTGGGCTGCAACTCGCCCACATGAAGCTGGA ATCCGTAGTA
NC_007681.1                1284  1.83e-32 AGTGATGGTA ATCTCCTAAACATAGTCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCATGAAGCTGGA ATGCGTAGTA
NC_013201.1                1277  4.54e-32 GGTAGAGCTA ATCTCCCAAACTCGGTCGTAGTTCGGATTGTGGGCTGAAACTCGCCCACATGAAGCTGGA TTCGGTAGTA
NC_015416.1                1267  9.29e-32 GGGGACGGGA ATCTCCTAAAACCAATCTTAGTTCGGATTGAGGGCTGCAACTCGCCCTCATGAAGCTGGA ATCCGTAGTA
NC_007355.1                1277  1.84e-31 AGGGCTGGTA ATCTCACAAACCCATCCTTAGTTCGGATCGAGGGCTGTAACTCGCCCTCGTGAAGCTGGA ATCCGTAGTA
NC_017527.1                1274  4.04e-31 GGGGAAGGAA ATCTCTTAAAGCCAATCGTAGTTCGGATTGAGGGCTGCAACTCGCCCTCATGAAGCTGGA ATCCGTAGTA
NC_007955.1                1275  4.04e-31 GGTGATGGCA ATCTCCTAAACCCAACCGTAGTTCGAATTGAGGACTGTAACTCGTCCTCATGAAGCTGGA ATCCGTAGTA
NC_021313.1                1277  1.22e-30 GGGGAAGCTA ATCTCCTAAACTCGGTCGTAGTTCGGATTGCGGGCTGAAACCCGCCCGCATGAAGCTGGA TTCGGTAGTA
NC_012028.1                1275  1.55e-30 GGAGACGGTA ATCTCAGAAACTCGATCGTAGTTCGGATTGTGGGCTGCAACTCGCCCACATGAAGCTGGA TTCGGTAGTA
NC_014507.1                1268  5.95e-30 AGTGTAGTCA ATCTCCTAAACCCGTCCCAAGTTCGGATTGTGGGCTGTAACTCGCCCACATGAAGCTGGA ATCCGTAGTA
NC_008212.2                1278  5.95e-30 AGAGAACGCT AATCTCGAAACTTAGTCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCATGAAGCTGGA TTCGGTAGTA
NC_014253.1                1272  7.36e-30 GGGGAAGGTA ATCTCATAAACCCGGCCGTAGTTCGGATCGAGGACTGAAACCCGTCCTCGTGAAGCTGGA ATCCGTAGTA
NC_000909.2                1277  1.37e-29 GGGGGAGCGA ATCCCCTAAACCCGGTCGTAGTCCGGATCGAGGGCTGTAACTCGCCCTCGTGAAGCCGGA ATCCGTAGTA
NC_009515.2                1276  1.52e-29 GGCGGAGGTA ATCCTCTAAACTTAGTCGTAGTTCGGATTGAGGACTGTAACTCGTTCTCATGAAGCTGGA ATGCGTAGTA
NC_007426.1                1272  4.07e-29 GGTGAAGCTA ATCTCCTAAACTTGGTCGTAGTTCGGATTGCGGACTGAAACCCGTCCGCATGAAGCTGGA TTCGGTAGTA
NC_015954.1                1279  9.37e-29 GGGAACGGTA ATCTCAGAAATTCGGTCGTAGTTCGGATTGTGGACTGCAACTCGTCCACATGAAGCTGGA TTCGGTAGTA
NC_013926.1                1275  1.46e-28 AGGGGGAGCT AATCCTGAAACCCGTCCGTAGTTCAGATCGAGGGCTGTAACTCGCCCTCGTGAAGCTGGA TTCCGTAGTA
NC_005877.1                1279  1.74e-28 AGGGGAAGCT AATCGCCAAACCTGTCCGTAGTTAGGATTGAGGGCTGTAACTCGCCCTCATGAATCTGGA TTCCGTAGTA
NC_007796.1                1267  1.90e-28 GGTGAGGATA ATCTCCTAAACCTGTCCGAAGTTCGGATTGCGGGTTGTAACTCACCCGCATGAAGCTGGA ATCCGTAGTA
NC_021592.1                1269  9.04e-28 AGAGGAAGCT AATCGCGAAACCCGTCCATAGTTAGGATTGAGGGCTGTAACTCGCCCTCATGAATCTGGA TTCCGTAGTA
NC_014205.1                1298  1.06e-27 GGGGGAGGCA ATCCCTCAAACCCCGCCGCAGTTGGGATCGAGGGCTGCAACTCGCCCTCGTGAACGTGGA ATCCCTAGTA
NC_013849.1                1310  2.24e-27 GGGGTAGGTA ATCCCCTAAACCCGGCCTCACCTGGGATCGAGGGCTGCAACTCGCCCTCGTGAACCTGGA ATCCGTAGTA
NC_015518.1                1294  5.29e-27 GGGGGAGGTA ATCCCTCAAACCCTGCCTCAGTTGGGATCGAGGGCTGAAACTCGCCCTCGTGAACGAGGA ATCCCTAGTA
NC_009440.1                1292  6.97e-27 GGGGAAGGCA ATCCCACAAACCCTGCCTCAGTTGGGATCGAGGGCTGAAACTCGCCCTCGTGAACGAGGA ATCCCTAGTA
NC_022093.1                1305  9.14e-27 GGGGGAGGCA ATCCCTTAAACCCCGCCTCAGTAGGAATCGAGGGCTGCAACTCGCCCTCGTGAACCTGGA ATCCCTAGTA
NC_020892.1                1265  1.04e-26 AGGCGAAGGC AATCTCGAAACCCGTCCGTAGTTCGGACTGAGGGTTGTAACTCACCCTCACGAAGCTGGA TTCCGTAGTA
NC_017461.1                1299  1.19e-26 GGGGAAGGCA ATCTCTTAAACCCAGCCGCAGTTGGGATCGAGGACTGAAACCCGTCCTCGTGAACGAGGA ATCCCTAGTA
NC_002578.1                1272  4.24e-26 AGGGGAAGCT AACCTCGAAACCCGTTCGTAGTCAGGACTGAGGGCTGTAACTCGCCCTCACGAATGTGGA TTCCGTAGTA
NC_008942.1                1265  5.40e-26 GGTGCAGTCA ATCTCCGAACCCCGCCCTTAGTTAGGATTGCGGGTTGCAACTCACCCGCATGAATCTGGA ATCTGTAGTA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 12 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_015216.1                       3.9e-35  1280_[+12]_244
NC_002607.1                       1.8e-34  1276_[+12]_236
NC_014729.1                         5e-33  1273_[+12]_245
NC_013202.1                       1.3e-32  1277_[+12]_235
NC_009712.1                       1.6e-32  1265_[+12]_240
NC_007681.1                       1.8e-32  1283_[+12]_246
NC_013201.1                       4.5e-32  1276_[+12]_235
NC_015416.1                       9.3e-32  1266_[+12]_241
NC_007355.1                       1.8e-31  1276_[+12]_241
NC_017527.1                         4e-31  1273_[+12]_241
NC_007955.1                         4e-31  1274_[+12]_241
NC_021313.1                       1.2e-30  1276_[+12]_234
NC_012028.1                       1.5e-30  1274_[+12]_235
NC_014507.1                       5.9e-30  1267_[+12]_240
NC_008212.2                       5.9e-30  1277_[+12]_235
NC_014253.1                       7.4e-30  1271_[+12]_245
NC_000909.2                       1.4e-29  1276_[+12]_241
NC_009515.2                       1.5e-29  1275_[+12]_240
NC_007426.1                       4.1e-29  1271_[+12]_234
NC_015954.1                       9.4e-29  1278_[+12]_234
NC_013926.1                       1.5e-28  1274_[+12]_238
NC_005877.1                       1.7e-28  1278_[+12]_230
NC_007796.1                       1.9e-28  1266_[+12]_239
NC_021592.1                         9e-28  1268_[+12]_242
NC_014205.1                       1.1e-27  1297_[+12]_253
NC_013849.1                       2.2e-27  1309_[+12]_241
NC_015518.1                       5.3e-27  1293_[+12]_245
NC_009440.1                         7e-27  1291_[+12]_255
NC_022093.1                       9.1e-27  1304_[+12]_248
NC_020892.1                         1e-26  1264_[+12]_240
NC_017461.1                       1.2e-26  1298_[+12]_243
NC_002578.1                       4.2e-26  1271_[+12]_239
NC_008942.1                       5.4e-26  1264_[+12]_240
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 12 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 12 width=60 seqs=33
NC_015216.1              ( 1281) ATCTCCTAAACCTAGTCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCATGAAGCTGGA  1 
NC_002607.1              ( 1277) ATCTCCTAAACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCATGAAGCTGGA  1 
NC_014729.1              ( 1274) ATCTCCTAAATCTGGTCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCATGAAGCTGGA  1 
NC_013202.1              ( 1278) ATCCCCTAAACTCGGTCGTAGTTCGGATTGTGGGCTGAAACTCGCCCACATGAAGCTGGA  1 
NC_009712.1              ( 1266) ATCTCCTAAACCCATCCTTAGTTCGGATTGTGGGCTGCAACTCGCCCACATGAAGCTGGA  1 
NC_007681.1              ( 1284) ATCTCCTAAACATAGTCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCATGAAGCTGGA  1 
NC_013201.1              ( 1277) ATCTCCCAAACTCGGTCGTAGTTCGGATTGTGGGCTGAAACTCGCCCACATGAAGCTGGA  1 
NC_015416.1              ( 1267) ATCTCCTAAAACCAATCTTAGTTCGGATTGAGGGCTGCAACTCGCCCTCATGAAGCTGGA  1 
NC_007355.1              ( 1277) ATCTCACAAACCCATCCTTAGTTCGGATCGAGGGCTGTAACTCGCCCTCGTGAAGCTGGA  1 
NC_017527.1              ( 1274) ATCTCTTAAAGCCAATCGTAGTTCGGATTGAGGGCTGCAACTCGCCCTCATGAAGCTGGA  1 
NC_007955.1              ( 1275) ATCTCCTAAACCCAACCGTAGTTCGAATTGAGGACTGTAACTCGTCCTCATGAAGCTGGA  1 
NC_021313.1              ( 1277) ATCTCCTAAACTCGGTCGTAGTTCGGATTGCGGGCTGAAACCCGCCCGCATGAAGCTGGA  1 
NC_012028.1              ( 1275) ATCTCAGAAACTCGATCGTAGTTCGGATTGTGGGCTGCAACTCGCCCACATGAAGCTGGA  1 
NC_014507.1              ( 1268) ATCTCCTAAACCCGTCCCAAGTTCGGATTGTGGGCTGTAACTCGCCCACATGAAGCTGGA  1 
NC_008212.2              ( 1278) AATCTCGAAACTTAGTCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCATGAAGCTGGA  1 
NC_014253.1              ( 1272) ATCTCATAAACCCGGCCGTAGTTCGGATCGAGGACTGAAACCCGTCCTCGTGAAGCTGGA  1 
NC_000909.2              ( 1277) ATCCCCTAAACCCGGTCGTAGTCCGGATCGAGGGCTGTAACTCGCCCTCGTGAAGCCGGA  1 
NC_009515.2              ( 1276) ATCCTCTAAACTTAGTCGTAGTTCGGATTGAGGACTGTAACTCGTTCTCATGAAGCTGGA  1 
NC_007426.1              ( 1272) ATCTCCTAAACTTGGTCGTAGTTCGGATTGCGGACTGAAACCCGTCCGCATGAAGCTGGA  1 
NC_015954.1              ( 1279) ATCTCAGAAATTCGGTCGTAGTTCGGATTGTGGACTGCAACTCGTCCACATGAAGCTGGA  1 
NC_013926.1              ( 1275) AATCCTGAAACCCGTCCGTAGTTCAGATCGAGGGCTGTAACTCGCCCTCGTGAAGCTGGA  1 
NC_005877.1              ( 1279) AATCGCCAAACCTGTCCGTAGTTAGGATTGAGGGCTGTAACTCGCCCTCATGAATCTGGA  1 
NC_007796.1              ( 1267) ATCTCCTAAACCTGTCCGAAGTTCGGATTGCGGGTTGTAACTCACCCGCATGAAGCTGGA  1 
NC_021592.1              ( 1269) AATCGCGAAACCCGTCCATAGTTAGGATTGAGGGCTGTAACTCGCCCTCATGAATCTGGA  1 
NC_014205.1              ( 1298) ATCCCTCAAACCCCGCCGCAGTTGGGATCGAGGGCTGCAACTCGCCCTCGTGAACGTGGA  1 
NC_013849.1              ( 1310) ATCCCCTAAACCCGGCCTCACCTGGGATCGAGGGCTGCAACTCGCCCTCGTGAACCTGGA  1 
NC_015518.1              ( 1294) ATCCCTCAAACCCTGCCTCAGTTGGGATCGAGGGCTGAAACTCGCCCTCGTGAACGAGGA  1 
NC_009440.1              ( 1292) ATCCCACAAACCCTGCCTCAGTTGGGATCGAGGGCTGAAACTCGCCCTCGTGAACGAGGA  1 
NC_022093.1              ( 1305) ATCCCTTAAACCCCGCCTCAGTAGGAATCGAGGGCTGCAACTCGCCCTCGTGAACCTGGA  1 
NC_020892.1              ( 1265) AATCTCGAAACCCGTCCGTAGTTCGGACTGAGGGTTGTAACTCACCCTCACGAAGCTGGA  1 
NC_017461.1              ( 1299) ATCTCTTAAACCCAGCCGCAGTTGGGATCGAGGACTGAAACCCGTCCTCGTGAACGAGGA  1 
NC_002578.1              ( 1272) AACCTCGAAACCCGTTCGTAGTCAGGACTGAGGGCTGTAACTCGCCCTCACGAATGTGGA  1 
NC_008942.1              ( 1265) ATCTCCGAACCCCGCCCTTAGTTAGGATTGCGGGTTGCAACTCACCCGCATGAATCTGGA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 12 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 11.3348 E= 9.3e-670 
   208  -1169  -1169  -1169 
   -38  -1169  -1169    209 
 -1169    174  -1169    -34 
 -1169     74  -1169    158 
 -1169    169   -239    -66 
   -64    139  -1169     -8 
 -1169    -48    -39    158 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   204   -306  -1169  -1169 
  -296    179   -339   -166 
  -296    146  -1169     51 
 -1169    158  -1169     34 
    36   -207     86   -166 
   -64   -306     78     51 
 -1169    102  -1169    134 
 -1169    198  -1169  -1169 
  -296   -306    100     66 
  -196    -48  -1169    198 
   208  -1169  -1169  -1169 
 -1169   -306    161  -1169 
 -1169   -306  -1169    234 
  -296   -207  -1169    224 
   -96    146    -81  -1169 
  -296  -1169    161  -1169 
  -196  -1169    156  -1169 
   208  -1169  -1169  -1169 
 -1169   -207  -1169    229 
 -1169     25  -1169    186 
 -1169  -1169    165  -1169 
   156   -107  -1169     -8 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   -38  -1169    136  -1169 
 -1169    184  -1169   -108 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
    50     10  -1169    104 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169   -107  -1169    219 
 -1169    198  -1169  -1169 
  -138  -1169    151  -1169 
 -1169    169  -1169     -8 
 -1169    193  -1169   -266 
 -1169    198  -1169  -1169 
   -38  -1169   -139    186 
 -1169    198  -1169  -1169 
   156  -1169     -7  -1169 
 -1169   -207  -1169    229 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    -48    113    -66 
 -1169    174   -107  -1169 
  -138   -306  -1169    219 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 12 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 9.3e-670 
 1.000000  0.000000  0.000000  0.000000 
 0.181818  0.000000  0.000000  0.818182 
 0.000000  0.848485  0.000000  0.151515 
 0.000000  0.424242  0.000000  0.575758 
 0.000000  0.818182  0.060606  0.121212 
 0.151515  0.666667  0.000000  0.181818 
 0.000000  0.181818  0.242424  0.575758 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.969697  0.030303  0.000000  0.000000 
 0.030303  0.878788  0.030303  0.060606 
 0.030303  0.696970  0.000000  0.272727 
 0.000000  0.757576  0.000000  0.242424 
 0.303030  0.060606  0.575758  0.060606 
 0.151515  0.030303  0.545455  0.272727 
 0.000000  0.515152  0.000000  0.484848 
 0.000000  1.000000  0.000000  0.000000 
 0.030303  0.030303  0.636364  0.303030 
 0.060606  0.181818  0.000000  0.757576 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.030303  0.969697  0.000000 
 0.000000  0.030303  0.000000  0.969697 
 0.030303  0.060606  0.000000  0.909091 
 0.121212  0.696970  0.181818  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.060606  0.000000  0.939394 
 0.000000  0.303030  0.000000  0.696970 
 0.000000  0.000000  1.000000  0.000000 
 0.696970  0.121212  0.000000  0.181818 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.181818  0.000000  0.818182  0.000000 
 0.000000  0.909091  0.000000  0.090909 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.333333  0.272727  0.000000  0.393939 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.121212  0.000000  0.878788 
 0.000000  1.000000  0.000000  0.000000 
 0.090909  0.000000  0.909091  0.000000 
 0.000000  0.818182  0.000000  0.181818 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  1.000000  0.000000  0.000000 
 0.181818  0.000000  0.121212  0.696970 
 0.000000  1.000000  0.000000  0.000000 
 0.696970  0.000000  0.303030  0.000000 
 0.000000  0.060606  0.000000  0.939394 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.181818  0.696970  0.121212 
 0.000000  0.848485  0.151515  0.000000 
 0.090909  0.030303  0.000000  0.878788 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 12 regular expression
--------------------------------------------------------------------------------
ATC[TC]CC[TG]AAAC[CT][CT][GA][GT][CT]C[GT]TAGTTCGGAT[TC]GAGGGCTG[TAC]AACTCGCCCTC[AG]TGAAGCTGGA
--------------------------------------------------------------------------------




Time 228.14 secs.

********************************************************************************


********************************************************************************
MOTIF 13 MEME	width =  60  sites =  33  llr = 1942  E-value = 3.5e-599
********************************************************************************
--------------------------------------------------------------------------------
	Motif 13 Description
--------------------------------------------------------------------------------
Simplified        A  :::::::::a::a:::7:33::::::::aa1::3::62:571::1715a:::::a:::::
pos.-specific     C  a::a::981::4:::1:::3::2:::::::7::7aa18a:::aa1:2::551:::8:::4
probability       G  ::a:a9:15::::aa::a::a72aa7a::::a8:::2::3:9::32:4::59a::2aaa:
matrix            T  :a:::1113:a5:::92:75:36::3:a::2:2:::2::33:::5171:5:::a:1:::6

         bits    2.4                            *                         *      
                 2.1  *        *                **                   *    **     
                 1.9 **       ** *  *           ***    **  *   **    *    **     
                 1.7 ** **    ** **** *  *     ****    **  *   **    *    **  ** 
Relative         1.4 ***** *  ** **** ** *  ** **** *  **  * * **    *   *** *** 
Entropy          1.2 ***** *  ** **** ** *  ** **** ** ** ** ****  * **  *** ****
(84.9 bits)      1.0 ******** ********** ** ** ********** ** ****  * ************
                 0.7 ******** *************************** ** **** ** ************
                 0.5 ************************************************************
                 0.2 ************************************************************
                 0.0 ------------------------------------------------------------

Multilevel           CTGCGGCCGATTAGGTAGTTGGTGGGGTAACGGCCCACCAAGCCTATAATCGGTACGGGT
consensus                    T  C    T AA TG  T    T  A   A GT   G  G CG        C
sequence                                C                   T                    
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 13 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_014507.1                 261  6.83e-32 TAGGATGGAT CTGCGGCCGATTAGGTAGTTGTTGGGGTAACGGCCCAACAAGCCTGTAATCGGTACGGGT TGTGGGAGCA
NC_013202.1                 263  6.83e-32 TAGGATGTGG CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCTATAATCGGTACGGGT TGTGAGAGCA
NC_009712.1                 259  4.65e-31 CAGGATGGGT CTGCGGCCGATTAGGTTGTTGTTGGGGTAACGGCCCAACAAGCCTGTAATCGGTACGGGT TGTGGGAGCA
NC_015954.1                 263  5.46e-31 GTGGATGTGG CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCGATAATCGGTACGGGT TGTGAGAGCA
NC_014729.1                 260  5.46e-31 CAGGATGCGG CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCGATAATCGGTACGGGT TGTGAGAGCA
NC_007426.1                 258  5.46e-31 TAGGATGTGG CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCGATAATCGGTACGGGT CATGAGAGTG
NC_021313.1                 263  2.18e-30 CAGGATGTGG CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACGGGT GATGAGAGTC
NC_012028.1                 262  2.18e-30 AAGGATGTGG CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCAATAATCGGTACGGGT CATGAGAGTG
NC_007796.1                 260  7.80e-30 CAGGATGAGT CTGCGGCCGATTAGGTAGTTGTTGGGGTAACGGCCCAACAAGCCTGTCATCGGTACGGGT TGTGGGAGCA
NC_005877.1                 271  1.33e-29 GGGGATGAGT CTGCGGCCTATCAGGTAGTAGGTGGTGTAACGGACCACCTAGCCTAAGACGGGTACGGGC CCTGGGAGGG
NC_002607.1                 262  2.54e-29 CAGGATGCGG CTGCGGTCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACGGGT TGTGAGAGCA
NC_022093.1                 298  3.26e-29 GAGGATGGGG CTGCGGCCTATCAGGTAGTTGGCGGGGTAACGGCCCGCCAAGCCTATAACGGGTAGGGGC CGTGAGAGCG
NC_013201.1                 264  3.26e-29 TAGGATGTGG CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCAGTAATCGGTACGGGT GGTGACAGCC
NC_007681.1                 273  5.33e-29 AAGGATAGAT CTGCGGCTGATTAGGTCGTTGGTGGGGTAATGGCCCACCAAGCCGATGATCGGTACGGGT TGTGAGAGCA
NC_000909.2                 269  8.59e-29 GAGGATGGGG CTGCGGCGGATTAGGTAGTTGGTGGGGTAACGGCCCACCAAGCCTACGATCCGTACGGGC CCTGAGAGGG
NC_008942.1                 258  1.37e-28 TAGGATGGGA CTGCGTCCGATTAGGTTGTTGGCGGGGTAACGGCCCACCAAGCCTTTTATCGGTACGGGT TGTGGGAGCA
NC_002578.1                 263  1.53e-28 GAGGATAAGT CTGCGGCCTATCAGGTAGTAGGTGGTGTAAAGGACCACCTAGCCTAAGACGGGTACGGGC CCTGAAAGGG
NC_013926.1                 263  3.00e-28 GAGGATGGGT CTGCGGCCTATCAGGTAGTTGGTGGTGTAAAGGACCACCAAGCCTGCGACGGGTACGGGC CCTGAGAGGG
NC_014205.1                 290  5.71e-28 GAGGATGGGG CTGCGGCCCATCAGGTAGTTGGCGGGGTAACGGCCCGCCAAGCCGATAACGGGTAGGGGC CGTGAGAGCG
NC_007355.1                 266  2.14e-27 AAGGATGGGT CTGCGGCCTATCAGGTAGTAGTGGGTGTAATGTACCTACTAGCCTACAACGGGTACGGGT TGTGAGAGCA
NC_015216.1                 268  8.02e-27 AAGGATGGAT CTGCGGCAGATTAGGTAGTTGGTGGGGTAATTGCCCACCAAGCCTTTGATCTGTACGGGT TGTGAGAGCA
NC_013849.1                 297  1.26e-26 GAGGATGGGT CTGCGGCGGATTAGGTAGTTGGCGGGGTAACGGCCCGCCAAGCCGAAGATCCGTACGGGC CATGAGAGTG
NC_021592.1                 262  3.24e-26 AAGGATGAGT CTGCGACCTATCAGGTAGTAGGTGGTGTAATGGACCACCTAGCCTCAGACGGGTACGGGC CCTGGGAGGG
NC_015416.1                 256  5.33e-26 AAGGATGGGT CTGCGGCCTATCAGGTAGTAGTGGGTGTAGCGTACCTACTAGCCTACGACGGGTACGGGT TGTGAGAGCA
NC_020892.1                 257  7.98e-26 TAGGATCGGT CTGCGGCCTATCAGGTAGTAGTGGGTGTAACGTACCCCCTAGCCGATTACGGGTATGGGC CTTGAGAGAG
NC_015518.1                 288  1.09e-25 GAGGATAGGG CTGCGGCCCATCAGGCTGTTGGCGGGGTAACGGCCCGCCAAACCGATAACGGGTAGGGGC CGTGAGAGCG
NC_008212.2                 264  1.09e-25 TAGGATGTGG CTGCGGTTGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCAGTACAGGT TGTGAGAGCA
NC_009515.2                 262  1.61e-25 AAGGATGGGT CTGCGGCCGATTAGGTAGTTGGTTAGGTAATGGCTTACCAAGCCTTTGATCGGTACGGGT TGTGAGAGCA
NC_014253.1                 261  2.54e-25 AAGGATGGAT CTGCGGTCTATCAGGTGGTAGTGGGTGTAACGTACCTACTAGCCAATGACGGGTACGGGT TGTGAGAGCA
NC_017461.1                 290  4.91e-25 GAGGATGGGG CTGCGTCCCATCAGGCTGTTGGCGGGGTAATGGCCCGCCAAACCTATAACGGGTAGGGGC CGTGAGAGCG
NC_007955.1                 265  1.72e-24 AAGGATGGAT CTGCGGTCTATCAGGTTGTAGTGGGTGTAACGTACCTACTAGCCTACGACGGATATGGGT TGTGAGAGCA
NC_009440.1                 287  3.38e-23 AAGGATGGGG CTGCGGCCCATCAGGCTGTTGGGGGAGTAAAGGTCCCCCAAACCGATAACGGGTAGGGGC CGTGGGAGCG
NC_017527.1                 263  3.16e-18 AGGATGGGTC TGCGGCCTATCAGGGTTGTAGTGGGTGTAATGTACCTACTAGCCTACGACGGGTACGGGT TGTGAGAGCA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 13 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_014507.1                       6.8e-32  260_[+13]_1247
NC_013202.1                       6.8e-32  262_[+13]_1250
NC_009712.1                       4.6e-31  258_[+13]_1247
NC_015954.1                       5.5e-31  262_[+13]_1250
NC_014729.1                       5.5e-31  259_[+13]_1259
NC_007426.1                       5.5e-31  257_[+13]_1248
NC_021313.1                       2.2e-30  262_[+13]_1248
NC_012028.1                       2.2e-30  261_[+13]_1248
NC_007796.1                       7.8e-30  259_[+13]_1246
NC_005877.1                       1.3e-29  270_[+13]_1238
NC_002607.1                       2.5e-29  261_[+13]_1251
NC_022093.1                       3.3e-29  297_[+13]_1255
NC_013201.1                       3.3e-29  263_[+13]_1248
NC_007681.1                       5.3e-29  272_[+13]_1257
NC_000909.2                       8.6e-29  268_[+13]_1249
NC_008942.1                       1.4e-28  257_[+13]_1247
NC_002578.1                       1.5e-28  262_[+13]_1248
NC_013926.1                         3e-28  262_[+13]_1250
NC_014205.1                       5.7e-28  289_[+13]_1261
NC_007355.1                       2.1e-27  265_[+13]_1252
NC_015216.1                         8e-27  267_[+13]_1257
NC_013849.1                       1.3e-26  296_[+13]_1254
NC_021592.1                       3.2e-26  261_[+13]_1249
NC_015416.1                       5.3e-26  255_[+13]_1252
NC_020892.1                         8e-26  256_[+13]_1248
NC_015518.1                       1.1e-25  287_[+13]_1251
NC_008212.2                       1.1e-25  263_[+13]_1249
NC_009515.2                       1.6e-25  261_[+13]_1254
NC_014253.1                       2.5e-25  260_[+13]_1256
NC_017461.1                       4.9e-25  289_[+13]_1252
NC_007955.1                       1.7e-24  264_[+13]_1251
NC_009440.1                       3.4e-23  286_[+13]_1260
NC_017527.1                       3.2e-18  262_[+13]_1252
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 13 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 13 width=60 seqs=33
NC_014507.1              (  261) CTGCGGCCGATTAGGTAGTTGTTGGGGTAACGGCCCAACAAGCCTGTAATCGGTACGGGT  1 
NC_013202.1              (  263) CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCTATAATCGGTACGGGT  1 
NC_009712.1              (  259) CTGCGGCCGATTAGGTTGTTGTTGGGGTAACGGCCCAACAAGCCTGTAATCGGTACGGGT  1 
NC_015954.1              (  263) CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCGATAATCGGTACGGGT  1 
NC_014729.1              (  260) CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCGATAATCGGTACGGGT  1 
NC_007426.1              (  258) CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCGATAATCGGTACGGGT  1 
NC_021313.1              (  263) CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACGGGT  1 
NC_012028.1              (  262) CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCAATAATCGGTACGGGT  1 
NC_007796.1              (  260) CTGCGGCCGATTAGGTAGTTGTTGGGGTAACGGCCCAACAAGCCTGTCATCGGTACGGGT  1 
NC_005877.1              (  271) CTGCGGCCTATCAGGTAGTAGGTGGTGTAACGGACCACCTAGCCTAAGACGGGTACGGGC  1 
NC_002607.1              (  262) CTGCGGTCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACGGGT  1 
NC_022093.1              (  298) CTGCGGCCTATCAGGTAGTTGGCGGGGTAACGGCCCGCCAAGCCTATAACGGGTAGGGGC  1 
NC_013201.1              (  264) CTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCAGTAATCGGTACGGGT  1 
NC_007681.1              (  273) CTGCGGCTGATTAGGTCGTTGGTGGGGTAATGGCCCACCAAGCCGATGATCGGTACGGGT  1 
NC_000909.2              (  269) CTGCGGCGGATTAGGTAGTTGGTGGGGTAACGGCCCACCAAGCCTACGATCCGTACGGGC  1 
NC_008942.1              (  258) CTGCGTCCGATTAGGTTGTTGGCGGGGTAACGGCCCACCAAGCCTTTTATCGGTACGGGT  1 
NC_002578.1              (  263) CTGCGGCCTATCAGGTAGTAGGTGGTGTAAAGGACCACCTAGCCTAAGACGGGTACGGGC  1 
NC_013926.1              (  263) CTGCGGCCTATCAGGTAGTTGGTGGTGTAAAGGACCACCAAGCCTGCGACGGGTACGGGC  1 
NC_014205.1              (  290) CTGCGGCCCATCAGGTAGTTGGCGGGGTAACGGCCCGCCAAGCCGATAACGGGTAGGGGC  1 
NC_007355.1              (  266) CTGCGGCCTATCAGGTAGTAGTGGGTGTAATGTACCTACTAGCCTACAACGGGTACGGGT  1 
NC_015216.1              (  268) CTGCGGCAGATTAGGTAGTTGGTGGGGTAATTGCCCACCAAGCCTTTGATCTGTACGGGT  1 
NC_013849.1              (  297) CTGCGGCGGATTAGGTAGTTGGCGGGGTAACGGCCCGCCAAGCCGAAGATCCGTACGGGC  1 
NC_021592.1              (  262) CTGCGACCTATCAGGTAGTAGGTGGTGTAATGGACCACCTAGCCTCAGACGGGTACGGGC  1 
NC_015416.1              (  256) CTGCGGCCTATCAGGTAGTAGTGGGTGTAGCGTACCTACTAGCCTACGACGGGTACGGGT  1 
NC_020892.1              (  257) CTGCGGCCTATCAGGTAGTAGTGGGTGTAACGTACCCCCTAGCCGATTACGGGTATGGGC  1 
NC_015518.1              (  288) CTGCGGCCCATCAGGCTGTTGGCGGGGTAACGGCCCGCCAAACCGATAACGGGTAGGGGC  1 
NC_008212.2              (  264) CTGCGGTTGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCAGTACAGGT  1 
NC_009515.2              (  262) CTGCGGCCGATTAGGTAGTTGGTTAGGTAATGGCTTACCAAGCCTTTGATCGGTACGGGT  1 
NC_014253.1              (  261) CTGCGGTCTATCAGGTGGTAGTGGGTGTAACGTACCTACTAGCCAATGACGGGTACGGGT  1 
NC_017461.1              (  290) CTGCGTCCCATCAGGCTGTTGGCGGGGTAATGGCCCGCCAAACCTATAACGGGTAGGGGC  1 
NC_007955.1              (  265) CTGCGGTCTATCAGGTTGTAGTGGGTGTAACGTACCTACTAGCCTACGACGGATATGGGT  1 
NC_009440.1              (  287) CTGCGGCCCATCAGGCTGTTGGGGGAGTAAAGGTCCCCCAAACCGATAACGGGTAGGGGC  1 
NC_017527.1              (  263) TGCGGCCTATCAGGGTTGTAGTGGGTGTAATGTACCTACTAGCCTACGACGGGTACGGGT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 13 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 11.9126 E= 3.5e-599 
 -1169    193  -1169   -266 
 -1169  -1169   -339    234 
 -1169   -306    161  -1169 
 -1169    193   -339  -1169 
 -1169  -1169    165  -1169 
  -296   -306    147   -166 
 -1169    179  -1169    -66 
  -296    169   -239   -108 
  -296   -107     78     66 
   204  -1169  -1169   -266 
 -1169   -306  -1169    234 
  -296     74  -1169    151 
   204  -1169   -339  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169   -148  -1169    224 
   162   -306   -339     14 
 -1169  -1169    165  -1169 
    21  -1169  -1169    192 
    21     10  -1169    124 
 -1169  -1169    165  -1169 
 -1169  -1169    119     51 
 -1169    -48    -58    166 
 -1169  -1169    161   -266 
  -296  -1169    161  -1169 
  -296  -1169    107     66 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
   204  -1169   -339  -1169 
  -138    146  -1169     14 
 -1169  -1169    161   -266 
 -1169  -1169    136     -8 
    36    139  -1169   -266 
 -1169    193  -1169   -266 
 -1169    193  -1169   -266 
   143   -207   -107    -34 
     4    158  -1169  -1169 
 -1169    198  -1169  -1169 
    95  -1169    -22     51 
   162  -1169  -1169     51 
  -138  -1169    151  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
  -138   -148    -22    151 
   162   -306   -107   -108 
   -96    -48  -1169    186 
   113   -306     31   -166 
   208  -1169  -1169  -1169 
 -1169     84  -1169    151 
 -1169    110     52  -1169 
  -296   -207    147   -266 
  -296  -1169    161  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169    163   -107   -166 
  -296  -1169    161  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169     52  -1169    173 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 13 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 3.5e-599 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  0.000000  0.030303  0.969697 
 0.000000  0.030303  0.969697  0.000000 
 0.000000  0.969697  0.030303  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.030303  0.878788  0.060606 
 0.000000  0.878788  0.000000  0.121212 
 0.030303  0.818182  0.060606  0.090909 
 0.030303  0.121212  0.545455  0.303030 
 0.969697  0.000000  0.000000  0.030303 
 0.000000  0.030303  0.000000  0.969697 
 0.030303  0.424242  0.000000  0.545455 
 0.969697  0.000000  0.030303  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.090909  0.000000  0.909091 
 0.727273  0.030303  0.030303  0.212121 
 0.000000  0.000000  1.000000  0.000000 
 0.272727  0.000000  0.000000  0.727273 
 0.272727  0.272727  0.000000  0.454545 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.727273  0.272727 
 0.000000  0.181818  0.212121  0.606061 
 0.000000  0.000000  0.969697  0.030303 
 0.030303  0.000000  0.969697  0.000000 
 0.030303  0.000000  0.666667  0.303030 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.969697  0.000000  0.030303  0.000000 
 0.090909  0.696970  0.000000  0.212121 
 0.000000  0.000000  0.969697  0.030303 
 0.000000  0.000000  0.818182  0.181818 
 0.303030  0.666667  0.000000  0.030303 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  0.969697  0.000000  0.030303 
 0.636364  0.060606  0.151515  0.151515 
 0.242424  0.757576  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.454545  0.000000  0.272727  0.272727 
 0.727273  0.000000  0.000000  0.272727 
 0.090909  0.000000  0.909091  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.090909  0.090909  0.272727  0.545455 
 0.727273  0.030303  0.151515  0.090909 
 0.121212  0.181818  0.000000  0.696970 
 0.515152  0.030303  0.393939  0.060606 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.454545  0.000000  0.545455 
 0.000000  0.545455  0.454545  0.000000 
 0.030303  0.060606  0.878788  0.030303 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.787879  0.151515  0.060606 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.363636  0.000000  0.636364 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 13 regular expression
--------------------------------------------------------------------------------
CTGCGGCC[GT]AT[TC]AGGT[AT]G[TA][TAC]G[GT][TG]GG[GT]GTAA[CT]GG[CA]CCA[CA]C[AGT][AT]GCC[TG]AT[AG]A[TC][CG]GGTACGGG[TC]
--------------------------------------------------------------------------------




Time 249.76 secs.

********************************************************************************


********************************************************************************
MOTIF 14 MEME	width =  60  sites =  33  llr = 1862  E-value = 1.9e-566
********************************************************************************
--------------------------------------------------------------------------------
	Motif 14 Description
--------------------------------------------------------------------------------
Simplified        A  :::22::13::::::3a:1:aa2:::2:aa2::33::2::::::6a::a:::::::aa:2
pos.-specific     C  25522536::::aa:2::1::::77:1::::733:aa:a8:::::::::9::78:a::::
probability       G  824252614a:a::a2:a7a::82:a14::8:627::8:::aaa4:a:::a7::a:::a8
matrix            T  :32424123:9::::3::1::::13:76:::3:1:::::2a::::::a:1:332::::::

         bits    2.4                                         *      *            
                 2.1                 *   **      **          *    * **       **  
                 1.9           * **  *   **      **     ** * *    * **      ***  
                 1.7          ****** **  **   *  **     ** * **** ******   ***** 
Relative         1.4          ****** ** ***   *  **     ** ****** ******  ****** 
Entropy          1.2 *        ****** ** ***  ** *** *   ** ****** ****** ******* 
(81.4 bits)      1.0 *        ****** ** **** ********  ***************** ********
                 0.7 **       ****** ** ************** **************************
                 0.5 ***  ********** ***************** **************************
                 0.2 **** **************************** **************************
                 0.0 ------------------------------------------------------------

Multilevel           GCCTGCGCGGTGCCGTAGGGAAGCCGTTAAGCGAGCCGCCTGGGAAGTACGGCCGCAAGG
consensus             TGCCTC A      A        T  G  ATCCA  A      G      TT       
sequence                G    T      C                 G                          
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 14 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_007426.1                 832  7.29e-31 CAGGCTACGA GCCTGCGCTGTGCCGTAGGGAAGCCGTGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGG ATGAAACTTA
NC_014205.1                 860  9.51e-30 CGGGCTTAGA GCCCGCCCAGTGCCGCAGGGAAGCCGTTAAGCCCGCCGCCTGGGGAGTACGGCCGCAAGG CTGAAACTTA
NC_014729.1                 834  1.75e-29 CAGGCTACGA GCCTGTGCTGTGCCGTAGGGAAGCCGAGAAGTGAACCGCCTGGGAAGTACGTCCGCAAGG ATGAAACTTA
NC_013202.1                 837  3.11e-29 CAGGCTACGA GCCTGCGCTGTGCCGTAGGGAAGCCGAGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGG ATGAAACTTA
NC_017461.1                 861  3.75e-29 CGGACCTAGA GTCCGTCCAGTGCCGCAGGGAAGCCGTTAAGTCCGCCGCCTGGGGAGTACGGCCGCAAGG CTGAAACTTA
NC_022093.1                 868  5.40e-29 CGGGCTTCGT GCCCGCCTAGTGCCGTAGGGAAGCCGTTAAGCCTGCCGCCTGGGGAGTACGGCCGCAAGG CTGAAACTTA
NC_013849.1                 870  2.08e-28 CGAGCCACGA GCTCGCCCGGTGCCGGAGGGAAGCCGTTAAGCCCGCCGCCTGGGGAGTACGGCCGCAAGG CTGAAACTTA
NC_002607.1                 836  2.84e-28 CAGGCTACGA GCCTGCGCTGTGCCGTAGGGAAGCCGAGAAGCGGACCGCCTGGGAAGTACGTCTGCAAGG ATGAAACTTA
NC_014253.1                 834  6.95e-28 GATGGTACGG CCGTTCCTAGTGCCGAAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGG CTGAAACTTA
NC_007355.1                 839  8.02e-28 CATGGCGCGA CCGTGTCTGGTGCCGCAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGG CTGAAACTTA
NC_008212.2                 838  1.06e-27 CAGACTACGC GTCTCTGTTGTGCCGTAGGGAAGCCGAGAAGCGAACCGCCTGGGAAGTACGTCTGCAAGG ATGAAACTTA
NC_000909.2                 840  1.06e-27 TCGGCTTCGG GCCGACGCGGTGCCGAAGGGAAGCCGTTAAGTCCGCCGCCTGGGGAGTACGGTCGCAAGA CTGAAACTTA
NC_009515.2                 836  2.36e-27 GTGGCTTTGA GCTGTCCCAGTGCCGAAGGGAAGCTGTTAAGTCCGCCGCCTGGGAAGTACGGTCGCAAGA CTGAAACTTA
NC_007955.1                 837  3.05e-27 GGCGGTGCGA CCGCTTCTGGTGCCGTAGGGAAGCCGTGAAGCGAACCACCTGGGAAGTACGGCCGCAAGG CTGAAACTTA
NC_015416.1                 829  3.45e-27 CACGGTGCGA CCGTTGTCGGTGCCGTAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGG CTGAAACTTA
NC_015216.1                 841  3.91e-27 ATGGCCTCGA GCTGCTCCAGTGCCGAAGGGAAGCTGTTAAGTCCACCGCCTGGGAAGTACGGTCGCAAGA CTGAAACTTA
NC_007681.1                 846  7.99e-27 ATGGCCTCGA GTTGTTCCGGTGCCGAAGGGAAGCTGTTAAGTCCACCGCCTGGGAAGTACGGTCGCAAGA CTGAAACTTA
NC_015954.1                 837  1.40e-26 CTCACTACGA GTGAGTGATGTGCCGCAGGGAAGCCGCTAAGCGAACCGCCTGGGAAGTACGTCTGCAAGG ATGAAACTTA
NC_007796.1                 829  2.16e-26 GTGACCACGT GTCACTGAGGTGCCGAAGGGAAACCGTGAAACGCGCCGCCTGGGGAGTACGGTCGCAAGG CTGAAACTTA
NC_012028.1                 836  4.40e-26 CCCACTACGA GTGGGTGCTGTGCCGTAGGGAAGCCGCTAAACAGACCGCCTGGGAAGTACGTCCGCAAGG ATGAAACTTA
NC_021313.1                 837  7.11e-26 CAGGCTACGA GCCTGCGCTGTGCCGCAGTGAAGGCGCTAAGCGGACCGCCTGGGAAGTACGTCTGCAAGG ATGAAACTTA
NC_017527.1                 836  1.60e-25 CACGGTGCGA CCGTGATTGGTGCCGTAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTATGGCCGCAAGG CTGAAACTTA
NC_014507.1                 830  1.60e-25 GTGACCACGA GTCACCTGGGTGCCGAAGGGAAACCGTGAAACGTGCCGCCTGGGAAGTACGGTCGCAAGG CTGAAACTTA
NC_009440.1                 855  1.74e-25 TAGGCTTTGT GCCTGCGCGGTGCCGCAGGAAAACTGGTAAGCCCGCCGCCTGGGGAGTACGGCCGCAAGG CTGAAACTTA
NC_015518.1                 856  2.65e-25 TAGGCTTTGC GCCTACGCGGTGCCGCAGGGAAACCGGTAAGCCTGCCGCCTGGGGAGTACGCCCGCAAGG GTGAAACTTA
NC_009712.1                 828  3.38e-25 GTGACCACGA GTCACCGAGGTGCCGAAGAGAAATCGTGAAACGCGCCGCCTGGGAAGTACGGTCGCAAGG CTGAAACTTA
NC_013926.1                 835  1.37e-24 GGTCTCTCGG GGGCCGGCAGTGCCGGAGCGAAGGTGTTAAGCGGGCCGCTTGGGGAGTACGGCCGCAAGG CTGAAACTTA
NC_002578.1                 836  9.00e-24 TCTCCGTTGA GGGGGGGCAGTGCCGTAGCGAAGGTGTTAAGTGGGTCACTTGGGGAGTACGGCCGCAAGG CTGAAACTTA
NC_013201.1                 838  1.06e-23 TGCACTACGA GTGCACGGTGAGCCGAAGTGAAGACGATAAACGAGCCGCCTGGGAAGTACGTCCGCAAGG ATGAAACTTA
NC_008942.1                 827  1.18e-23 GTAACCACGT GTTACTGATGCGCCGAAGAGAAATCGTGAAACGCACCACCTGGGAAGTACGGTCGCAAGG CTGAAACTTA
NC_005877.1                 843  2.33e-23 TTTCCGTTGA GGGGAGGCAGTGCCGGAGCGAAGGTGTTAAGTGGGCCGCTTGGGGAGTATGGTCGCAAGA CTGAAACTTA
NC_020892.1                 829  3.01e-23 GGCCCTTCGG GGGCATTCAGTGCCGGAGAGAAGTTGTTAAGTCTGCTACTTGGGGAGTACGTCCGCAAGG ATGAAACTTA
NC_021592.1                 833  1.24e-22 TTTCCGTTGA GGGAAGGCAGTGTCGGAGCGAAGGTGTTAAATGGGCCGCTTGGGAAGTATGGTCGCAAGA CTGAAACTTA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 14 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_007426.1                       7.3e-31  831_[+14]_674
NC_014205.1                       9.5e-30  859_[+14]_691
NC_014729.1                       1.7e-29  833_[+14]_685
NC_013202.1                       3.1e-29  836_[+14]_676
NC_017461.1                       3.8e-29  860_[+14]_681
NC_022093.1                       5.4e-29  867_[+14]_685
NC_013849.1                       2.1e-28  869_[+14]_681
NC_002607.1                       2.8e-28  835_[+14]_677
NC_014253.1                         7e-28  833_[+14]_683
NC_007355.1                         8e-28  838_[+14]_679
NC_008212.2                       1.1e-27  837_[+14]_675
NC_000909.2                       1.1e-27  839_[+14]_678
NC_009515.2                       2.4e-27  835_[+14]_680
NC_007955.1                         3e-27  836_[+14]_679
NC_015416.1                       3.5e-27  828_[+14]_679
NC_015216.1                       3.9e-27  840_[+14]_684
NC_007681.1                         8e-27  845_[+14]_684
NC_015954.1                       1.4e-26  836_[+14]_676
NC_007796.1                       2.2e-26  828_[+14]_677
NC_012028.1                       4.4e-26  835_[+14]_674
NC_021313.1                       7.1e-26  836_[+14]_674
NC_017527.1                       1.6e-25  835_[+14]_679
NC_014507.1                       1.6e-25  829_[+14]_678
NC_009440.1                       1.7e-25  854_[+14]_692
NC_015518.1                       2.7e-25  855_[+14]_683
NC_009712.1                       3.4e-25  827_[+14]_678
NC_013926.1                       1.4e-24  834_[+14]_678
NC_002578.1                         9e-24  835_[+14]_675
NC_013201.1                       1.1e-23  837_[+14]_674
NC_008942.1                       1.2e-23  826_[+14]_678
NC_005877.1                       2.3e-23  842_[+14]_666
NC_020892.1                         3e-23  828_[+14]_676
NC_021592.1                       1.2e-22  832_[+14]_678
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 14 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 14 width=60 seqs=33
NC_007426.1              (  832) GCCTGCGCTGTGCCGTAGGGAAGCCGTGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGG  1 
NC_014205.1              (  860) GCCCGCCCAGTGCCGCAGGGAAGCCGTTAAGCCCGCCGCCTGGGGAGTACGGCCGCAAGG  1 
NC_014729.1              (  834) GCCTGTGCTGTGCCGTAGGGAAGCCGAGAAGTGAACCGCCTGGGAAGTACGTCCGCAAGG  1 
NC_013202.1              (  837) GCCTGCGCTGTGCCGTAGGGAAGCCGAGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGG  1 
NC_017461.1              (  861) GTCCGTCCAGTGCCGCAGGGAAGCCGTTAAGTCCGCCGCCTGGGGAGTACGGCCGCAAGG  1 
NC_022093.1              (  868) GCCCGCCTAGTGCCGTAGGGAAGCCGTTAAGCCTGCCGCCTGGGGAGTACGGCCGCAAGG  1 
NC_013849.1              (  870) GCTCGCCCGGTGCCGGAGGGAAGCCGTTAAGCCCGCCGCCTGGGGAGTACGGCCGCAAGG  1 
NC_002607.1              (  836) GCCTGCGCTGTGCCGTAGGGAAGCCGAGAAGCGGACCGCCTGGGAAGTACGTCTGCAAGG  1 
NC_014253.1              (  834) CCGTTCCTAGTGCCGAAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGG  1 
NC_007355.1              (  839) CCGTGTCTGGTGCCGCAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGG  1 
NC_008212.2              (  838) GTCTCTGTTGTGCCGTAGGGAAGCCGAGAAGCGAACCGCCTGGGAAGTACGTCTGCAAGG  1 
NC_000909.2              (  840) GCCGACGCGGTGCCGAAGGGAAGCCGTTAAGTCCGCCGCCTGGGGAGTACGGTCGCAAGA  1 
NC_009515.2              (  836) GCTGTCCCAGTGCCGAAGGGAAGCTGTTAAGTCCGCCGCCTGGGAAGTACGGTCGCAAGA  1 
NC_007955.1              (  837) CCGCTTCTGGTGCCGTAGGGAAGCCGTGAAGCGAACCACCTGGGAAGTACGGCCGCAAGG  1 
NC_015416.1              (  829) CCGTTGTCGGTGCCGTAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGG  1 
NC_015216.1              (  841) GCTGCTCCAGTGCCGAAGGGAAGCTGTTAAGTCCACCGCCTGGGAAGTACGGTCGCAAGA  1 
NC_007681.1              (  846) GTTGTTCCGGTGCCGAAGGGAAGCTGTTAAGTCCACCGCCTGGGAAGTACGGTCGCAAGA  1 
NC_015954.1              (  837) GTGAGTGATGTGCCGCAGGGAAGCCGCTAAGCGAACCGCCTGGGAAGTACGTCTGCAAGG  1 
NC_007796.1              (  829) GTCACTGAGGTGCCGAAGGGAAACCGTGAAACGCGCCGCCTGGGGAGTACGGTCGCAAGG  1 
NC_012028.1              (  836) GTGGGTGCTGTGCCGTAGGGAAGCCGCTAAACAGACCGCCTGGGAAGTACGTCCGCAAGG  1 
NC_021313.1              (  837) GCCTGCGCTGTGCCGCAGTGAAGGCGCTAAGCGGACCGCCTGGGAAGTACGTCTGCAAGG  1 
NC_017527.1              (  836) CCGTGATTGGTGCCGTAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTATGGCCGCAAGG  1 
NC_014507.1              (  830) GTCACCTGGGTGCCGAAGGGAAACCGTGAAACGTGCCGCCTGGGAAGTACGGTCGCAAGG  1 
NC_009440.1              (  855) GCCTGCGCGGTGCCGCAGGAAAACTGGTAAGCCCGCCGCCTGGGGAGTACGGCCGCAAGG  1 
NC_015518.1              (  856) GCCTACGCGGTGCCGCAGGGAAACCGGTAAGCCTGCCGCCTGGGGAGTACGCCCGCAAGG  1 
NC_009712.1              (  828) GTCACCGAGGTGCCGAAGAGAAATCGTGAAACGCGCCGCCTGGGAAGTACGGTCGCAAGG  1 
NC_013926.1              (  835) GGGCCGGCAGTGCCGGAGCGAAGGTGTTAAGCGGGCCGCTTGGGGAGTACGGCCGCAAGG  1 
NC_002578.1              (  836) GGGGGGGCAGTGCCGTAGCGAAGGTGTTAAGTGGGTCACTTGGGGAGTACGGCCGCAAGG  1 
NC_013201.1              (  838) GTGCACGGTGAGCCGAAGTGAAGACGATAAACGAGCCGCCTGGGAAGTACGTCCGCAAGG  1 
NC_008942.1              (  827) GTTACTGATGCGCCGAAGAGAAATCGTGAAACGCACCACCTGGGAAGTACGGTCGCAAGG  1 
NC_005877.1              (  843) GGGGAGGCAGTGCCGGAGCGAAGGTGTTAAGTGGGCCGCTTGGGGAGTATGGTCGCAAGA  1 
NC_020892.1              (  829) GGGCATTCAGTGCCGGAGAGAAGTTGTTAAGTCTGCTACTTGGGGAGTACGTCCGCAAGG  1 
NC_021592.1              (  833) GGGAAGGCAGTGTCGGAGCGAAGGTGTTAAATGGGCCGCTTGGGAAGTATGGTCGCAAGA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 14 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 1.9e-566 
 -1169    -75    142  -1169 
 -1169    110   -107     66 
 -1169     84     31    -34 
   -38     -7    -58     92 
   -38    -26     52    -34 
  -296     84   -107     92 
 -1169     25     86    -66 
   -96    132   -239     -8 
    50  -1169     19     66 
 -1169  -1169    165  -1169 
  -296   -306  -1169    229 
 -1169  -1169    165  -1169 
 -1169    193  -1169   -266 
 -1169    198  -1169  -1169 
 -1169  -1169    165  -1169 
    36    -26   -107     80 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
  -138   -107    119   -166 
  -296  -1169    161  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   -38  -1169    136  -1169 
  -296    152   -107   -108 
 -1169    152  -1169     51 
 -1169  -1169    165  -1169 
   -64   -148   -239    186 
 -1169  -1169     42    158 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   -15  -1169    131  -1169 
 -1169    146  -1169     66 
  -296     39    100  -1169 
    50     39    -58    -66 
    36  -1169    113  -1169 
 -1169    193  -1169   -266 
 -1169    193  -1169   -266 
     4  -1169    125  -1169 
 -1169    198  -1169  -1169 
 -1169    174  -1169    -34 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
   143  -1169     19  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
 -1169    184  -1169   -108 
 -1169  -1169    165  -1169 
 -1169   -306    107     66 
 -1169    146  -1169     66 
 -1169    169  -1169     -8 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
   -38  -1169    136  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 14 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 1.9e-566 
 0.000000  0.151515  0.848485  0.000000 
 0.000000  0.545455  0.151515  0.303030 
 0.000000  0.454545  0.393939  0.151515 
 0.181818  0.242424  0.212121  0.363636 
 0.181818  0.212121  0.454545  0.151515 
 0.030303  0.454545  0.151515  0.363636 
 0.000000  0.303030  0.575758  0.121212 
 0.121212  0.636364  0.060606  0.181818 
 0.333333  0.000000  0.363636  0.303030 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.030303  0.000000  0.939394 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.303030  0.212121  0.151515  0.333333 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.090909  0.121212  0.727273  0.060606 
 0.030303  0.000000  0.969697  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.181818  0.000000  0.818182  0.000000 
 0.030303  0.727273  0.151515  0.090909 
 0.000000  0.727273  0.000000  0.272727 
 0.000000  0.000000  1.000000  0.000000 
 0.151515  0.090909  0.060606  0.696970 
 0.000000  0.000000  0.424242  0.575758 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.212121  0.000000  0.787879  0.000000 
 0.000000  0.696970  0.000000  0.303030 
 0.030303  0.333333  0.636364  0.000000 
 0.333333  0.333333  0.212121  0.121212 
 0.303030  0.000000  0.696970  0.000000 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  0.969697  0.000000  0.030303 
 0.242424  0.000000  0.757576  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.848485  0.000000  0.151515 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.636364  0.000000  0.363636  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.909091  0.000000  0.090909 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.030303  0.666667  0.303030 
 0.000000  0.696970  0.000000  0.303030 
 0.000000  0.818182  0.000000  0.181818 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.181818  0.000000  0.818182  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 14 regular expression
--------------------------------------------------------------------------------
G[CT][CG][TCG][GC][CT][GC]C[GAT]GTGCCG[TAC]AGGGAAGC[CT]GT[TG]AA[GA][CT][GC][ACG][GA]CC[GA]CCTGGG[AG]AGTACG[GT][CT]CGCAAGG
--------------------------------------------------------------------------------




Time 270.57 secs.

********************************************************************************


********************************************************************************
MOTIF 15 MEME	width =  60  sites =  33  llr = 1708  E-value = 2.3e-499
********************************************************************************
--------------------------------------------------------------------------------
	Motif 15 Description
--------------------------------------------------------------------------------
Simplified        A  a:::aa::::::76a3:::a::4:2222:a:61:73293:65211:64:::276:73:::
pos.-specific     C  :5:a::a:aa:::4:1a:8:aa::2238::a2:81:1::::13:483:161::31:674:
probability       G  :2:::::a::9a2::1::::::6a655:a:::81:731:732592:1692:53:731:::
matrix            T  :4a:::::::1::::5:a2:::::12:::::1122:4:7212::42:::193:12::36a

         bits    2.4   *              *                                         *
                 2.1 * * **        *  * *         *                    *        *
                 1.9 * ***** **    * ** ***       **                   *        *
                 1.7 * ***** ** *  * ** *** *    ***      *            *        *
Relative         1.4 * **********  * ****** *    ***      **      *    *        *
Entropy          1.2 * **********  * ****** *    ***      **    * *  * * *     **
(74.7 bits)      1.0 * ************* ********   ****  *   ***   * * ** * *  * ***
                 0.7 ************************   ********* ****  * **** * ********
                 0.5 ************************   ********* ****  * ***************
                 0.2 ************************* **********************************
                 0.0 ------------------------------------------------------------

Multilevel           ACTCAACGCCGGAAATCTCACCGGGGGCGACAGCAGTATGAAGGCCAGGCTGAAGACCTT
consensus             T          GC A      A CACA   C  TAG ATGTC TTCA G TGCTGATC 
sequence                                                 A     A        A        
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 15 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_017527.1                 957  1.35e-34 GTTTAATTGG ATTCAACGCCGGAAATCTCACCGGGGGCGACAGCAATATGAAGGTCAGGCTGAAGACCTT ACCCGATTAG
NC_015416.1                 950  1.36e-30 GTTTAATTGG ATTCAACGCCGGAAATCTTACCGGGACCGACAGCAATATGAAGGCCAGGCTGAAGACTTT GCCGGATTAG
NC_015216.1                 962  1.56e-29 GTTTAATTGG ATTCAACGCCGGACATCTCACCAGGGGCGACAGCAGAATGATGGCCAGGTTGACGACCTT GCTTGACAAG
NC_014253.1                 955  1.92e-29 GTTTAATTGG ACTCAACGCCGGAAAACTCACCGGGGGCGACAGCAATATGTGGGTCAGGCTGAAGACCTT ACCTGAATCG
NC_007955.1                 958  4.27e-29 GTTTAATTGG ACTCAACGCCGGAAAACTCACCGGGGGCGACAGCAAAATGTAGGTCAAGCTAAAGACTTT ACCTGAATCG
NC_022093.1                 989  1.46e-27 GTTTAATTGG AGTCAACGCCGGAAACCTTACCGGGGGCGACAGCAGGATGAAGGCCAGGCTAACGACCTT GCCAGACGAG
NC_009515.2                 957  2.33e-27 GTTTAATTGG ATTCAACGCCGGACATCTCACCAGAGGCGACAGCTGTATGATAGCCAGGTTGATGACTTT GCTTGACTAG
NC_007681.1                 967  4.30e-27 GTTTAATTGG ATTCAACGCCGGACATCTCACCAGGAGCGACAGCAGAATGATAATCAGGTTGATGACCTT ATTTGACTAG
NC_007355.1                 960  4.99e-27 GTTTAATTGG ACTCAACGCCGGACAACTCACCGGGAACGACAGCAATATGTAGGTCAGGCCGAAGACCTT ACCTGAATCG
NC_014205.1                 981  8.79e-26 GTTTAATTGG AGTCAACGCCGGGAACCTCACCGGGGGCGACAGCAGGATGACGGCCAGGCTAACGGCCTT GCCCGACGCG
NC_000909.2                 961  8.79e-26 GTTTAATTGG ATTCAACGCCGGGCATCTTACCAGGGGCGACGGCAGGATGAAGGCCAGGTTGACGACCTT GCCAGACGCG
NC_015518.1                 977  7.28e-25 GCTCAATTGG AGTCAACGCCTGGAATCTCACCGGGGGAGACCGCAGGATGACGGCCAGGCTAACGACCTT GCCAGACTCG
NC_009440.1                 976  7.28e-25 GCTCAATTGG AGTCAACGCCTGGAATCTCACCGGGGGAGACCGCAGGATGACGGCCAGGCTAACGACCTT GCCAGACTCG
NC_009712.1                 949  2.10e-24 GTTTAATCGG ACTCAACGCCGGGAAACTCACCGGACAAGACAGCTGAATGATAGTCGGGCTGAAGACTCT ACTTGACTAG
NC_007796.1                 950  2.33e-24 GTTTAATCGG ACTCAACGCCGGAAATCTCACCGGATAAGACAGCTGAATGATAGTCGGGATGAAGACTCT ACTTGACTAG
NC_013926.1                 956  2.85e-24 GTTTAATTGG ATTCAACGCCGGAAAACTCACCGGGGGCGACCGGCACATGTGGGCCAGGCTGACGACCTT GCCCGAATAA
NC_017461.1                 982  8.29e-24 GCTTAATTGG AGTCAACGCCGGGAACTTTACCGGGGGCGACAGCAGGATGACGGCCAGGCTAATGACCTT GCCCGACGCG
NC_002578.1                 957  8.29e-24 GTTTAATTGG ATTCAACGCCGGAAAACTCACCGGGAGCGACCTTCGGATGAGGGTCAACCTGACGAATTT ACCCGATAGA
NC_013849.1                 991  9.98e-24 GTTTAATTGG ATTCAACGCCGGGAAGCTTACCGGGGGAGACAGCTCGATGAAGGTCGGGCTGAAGACCCT ACCAGAGTAG
NC_007426.1                 953  1.31e-23 GTTTAATTGG ACTCAACGCCGGACATCTCACCAGCTCCGACAGCAGTAATGACGGTCAGGTTGATGACCT TACCCGACGC
NC_008942.1                 948  4.05e-23 GTTTAATTGG ATTCAACGCCGGACATCTCACCGGATAAGACAGCTGAATGATTGTCAATCTGAAGGTTTT ACATGACTAG
NC_002607.1                 957  6.11e-23 GTTTAATTGG ACTCAACGCCGGACATCTCACCAGCCCCGACAGTAGTAATGACGGTCAGGTTGATGACCT TACCCGAGGC
NC_005877.1                 964  6.62e-23 GTTTAATTGG ATTCAACGCCGGAAAACTCACCGGGAGCGACCTGTGGATGAGAGTCAACCTGACGAGTTT ACTCGATAGC
NC_013202.1                 958  9.09e-23 GTTTAATTGG ACTCAACGCCGGACATCTCACCAGTCCCGACAGCAGTAATGACGGTCAGGTTGACGACTT TACCCGACGC
NC_021592.1                 954  1.67e-22 GTTTAATTGG ATTCAACGCCGGAAAACTCACCGGGAACGACCTGTGCATGAGAGTCAACCTGACGAGCTT ACTCGATAGC
NC_014729.1                 955  2.25e-22 GTTTAATTGG ACTCAACGCCGGACATCTCACCAGCTCCGACTACAGTAATGACGATCAGGTTGATGACCT TATCACGAGC
NC_021313.1                 958  3.45e-22 GTTTAATTGG ACTCAACGCCGGACATCTCACCGGCACCGACAGCAGTAATGACAGTCAGGCTGATGCCCT TACTCGATGC
NC_020892.1                 950  3.45e-22 GTTTAATTGG ATTCAACACCGGAAAACTCACCAGGGGAGACCATCACATGAAGACCAGGCTAATGACTTT GTCTGATTCT
NC_012028.1                 957  8.33e-22 GTTTAATTGG ACTCAACGCCGGACATCTCACCAGCGTCGACTGTAATAATGACGATCAGGTTGATGACCT TATCCGAGTT
NC_008212.2                 959  8.90e-22 GTTTAATTGG ACTCAACGCCGGACATCTCACCAGCTCCGACTACAGTGATGACGACCAGGTTGATGACCT CATCACGACG
NC_014507.1                 951  1.58e-21 GTTTAATTGG ACTCAACGCCGGGAAGCTCACCGGATAGGACAGCGGAATGATAACCGGGCTGAAGACTCT GTTTGACCAG
NC_013201.1                 959  1.05e-20 GTTTAATTGG ACTCAACGCCGGACATCTCACCAGTCCCGACAGTAATAACGACGGTCAGCTTGACGAGCT TACCCGAGTT
NC_015954.1                 958  2.58e-20 GTTTAATTGG ACTCAACGCCGGTAACCTTACCAGCCCCGACTACAGTGATGACGGCCAGGTTGATGACCT CGCCACGACG
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 15 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_017527.1                       1.3e-34  956_[+15]_558
NC_015416.1                       1.4e-30  949_[+15]_558
NC_015216.1                       1.6e-29  961_[+15]_563
NC_014253.1                       1.9e-29  954_[+15]_562
NC_007955.1                       4.3e-29  957_[+15]_558
NC_022093.1                       1.5e-27  988_[+15]_564
NC_009515.2                       2.3e-27  956_[+15]_559
NC_007681.1                       4.3e-27  966_[+15]_563
NC_007355.1                         5e-27  959_[+15]_558
NC_014205.1                       8.8e-26  980_[+15]_570
NC_000909.2                       8.8e-26  960_[+15]_557
NC_015518.1                       7.3e-25  976_[+15]_562
NC_009440.1                       7.3e-25  975_[+15]_571
NC_009712.1                       2.1e-24  948_[+15]_557
NC_007796.1                       2.3e-24  949_[+15]_556
NC_013926.1                       2.9e-24  955_[+15]_557
NC_017461.1                       8.3e-24  981_[+15]_560
NC_002578.1                       8.3e-24  956_[+15]_554
NC_013849.1                         1e-23  990_[+15]_560
NC_007426.1                       1.3e-23  952_[+15]_553
NC_008942.1                       4.1e-23  947_[+15]_557
NC_002607.1                       6.1e-23  956_[+15]_556
NC_005877.1                       6.6e-23  963_[+15]_545
NC_013202.1                       9.1e-23  957_[+15]_555
NC_021592.1                       1.7e-22  953_[+15]_557
NC_014729.1                       2.2e-22  954_[+15]_564
NC_021313.1                       3.5e-22  957_[+15]_553
NC_020892.1                       3.5e-22  949_[+15]_555
NC_012028.1                       8.3e-22  956_[+15]_553
NC_008212.2                       8.9e-22  958_[+15]_554
NC_014507.1                       1.6e-21  950_[+15]_557
NC_013201.1                       1.1e-20  958_[+15]_553
NC_015954.1                       2.6e-20  957_[+15]_555
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 15 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 15 width=60 seqs=33
NC_017527.1              (  957) ATTCAACGCCGGAAATCTCACCGGGGGCGACAGCAATATGAAGGTCAGGCTGAAGACCTT  1 
NC_015416.1              (  950) ATTCAACGCCGGAAATCTTACCGGGACCGACAGCAATATGAAGGCCAGGCTGAAGACTTT  1 
NC_015216.1              (  962) ATTCAACGCCGGACATCTCACCAGGGGCGACAGCAGAATGATGGCCAGGTTGACGACCTT  1 
NC_014253.1              (  955) ACTCAACGCCGGAAAACTCACCGGGGGCGACAGCAATATGTGGGTCAGGCTGAAGACCTT  1 
NC_007955.1              (  958) ACTCAACGCCGGAAAACTCACCGGGGGCGACAGCAAAATGTAGGTCAAGCTAAAGACTTT  1 
NC_022093.1              (  989) AGTCAACGCCGGAAACCTTACCGGGGGCGACAGCAGGATGAAGGCCAGGCTAACGACCTT  1 
NC_009515.2              (  957) ATTCAACGCCGGACATCTCACCAGAGGCGACAGCTGTATGATAGCCAGGTTGATGACTTT  1 
NC_007681.1              (  967) ATTCAACGCCGGACATCTCACCAGGAGCGACAGCAGAATGATAATCAGGTTGATGACCTT  1 
NC_007355.1              (  960) ACTCAACGCCGGACAACTCACCGGGAACGACAGCAATATGTAGGTCAGGCCGAAGACCTT  1 
NC_014205.1              (  981) AGTCAACGCCGGGAACCTCACCGGGGGCGACAGCAGGATGACGGCCAGGCTAACGGCCTT  1 
NC_000909.2              (  961) ATTCAACGCCGGGCATCTTACCAGGGGCGACGGCAGGATGAAGGCCAGGTTGACGACCTT  1 
NC_015518.1              (  977) AGTCAACGCCTGGAATCTCACCGGGGGAGACCGCAGGATGACGGCCAGGCTAACGACCTT  1 
NC_009440.1              (  976) AGTCAACGCCTGGAATCTCACCGGGGGAGACCGCAGGATGACGGCCAGGCTAACGACCTT  1 
NC_009712.1              (  949) ACTCAACGCCGGGAAACTCACCGGACAAGACAGCTGAATGATAGTCGGGCTGAAGACTCT  1 
NC_007796.1              (  950) ACTCAACGCCGGAAATCTCACCGGATAAGACAGCTGAATGATAGTCGGGATGAAGACTCT  1 
NC_013926.1              (  956) ATTCAACGCCGGAAAACTCACCGGGGGCGACCGGCACATGTGGGCCAGGCTGACGACCTT  1 
NC_017461.1              (  982) AGTCAACGCCGGGAACTTTACCGGGGGCGACAGCAGGATGACGGCCAGGCTAATGACCTT  1 
NC_002578.1              (  957) ATTCAACGCCGGAAAACTCACCGGGAGCGACCTTCGGATGAGGGTCAACCTGACGAATTT  1 
NC_013849.1              (  991) ATTCAACGCCGGGAAGCTTACCGGGGGAGACAGCTCGATGAAGGTCGGGCTGAAGACCCT  1 
NC_007426.1              (  953) ACTCAACGCCGGACATCTCACCAGCTCCGACAGCAGTAATGACGGTCAGGTTGATGACCT  1 
NC_008942.1              (  948) ATTCAACGCCGGACATCTCACCGGATAAGACAGCTGAATGATTGTCAATCTGAAGGTTTT  1 
NC_002607.1              (  957) ACTCAACGCCGGACATCTCACCAGCCCCGACAGTAGTAATGACGGTCAGGTTGATGACCT  1 
NC_005877.1              (  964) ATTCAACGCCGGAAAACTCACCGGGAGCGACCTGTGGATGAGAGTCAACCTGACGAGTTT  1 
NC_013202.1              (  958) ACTCAACGCCGGACATCTCACCAGTCCCGACAGCAGTAATGACGGTCAGGTTGACGACTT  1 
NC_021592.1              (  954) ATTCAACGCCGGAAAACTCACCGGGAACGACCTGTGCATGAGAGTCAACCTGACGAGCTT  1 
NC_014729.1              (  955) ACTCAACGCCGGACATCTCACCAGCTCCGACTACAGTAATGACGATCAGGTTGATGACCT  1 
NC_021313.1              (  958) ACTCAACGCCGGACATCTCACCGGCACCGACAGCAGTAATGACAGTCAGGCTGATGCCCT  1 
NC_020892.1              (  950) ATTCAACACCGGAAAACTCACCAGGGGAGACCATCACATGAAGACCAGGCTAATGACTTT  1 
NC_012028.1              (  957) ACTCAACGCCGGACATCTCACCAGCGTCGACTGTAATAATGACGATCAGGTTGATGACCT  1 
NC_008212.2              (  959) ACTCAACGCCGGACATCTCACCAGCTCCGACTACAGTGATGACGACCAGGTTGATGACCT  1 
NC_014507.1              (  951) ACTCAACGCCGGGAAGCTCACCGGATAGGACAGCGGAATGATAACCGGGCTGAAGACTCT  1 
NC_013201.1              (  959) ACTCAACGCCGGACATCTCACCAGTCCCGACAGTAATAACGACGGTCAGCTTGACGAGCT  1 
NC_015954.1              (  958) ACTCAACGCCGGTAACCTTACCAGCCCCGACTACAGTGATGACGGCCAGGTTGATGACCT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 15 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 11.9126 E= 2.3e-499 
   208  -1169  -1169  -1169 
 -1169     84   -107    104 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
  -296  -1169    161  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169  -1169    156   -166 
 -1169  -1169    165  -1169 
   162  -1169    -39   -266 
   129     74  -1169  -1169 
   208  -1169  -1169  -1169 
    21   -107   -239    151 
 -1169    193  -1169   -266 
 -1169  -1169  -1169    238 
 -1169    169  -1169     -8 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
    74  -1169     93  -1169 
 -1169  -1169    165  -1169 
   -64    -26     86   -166 
   -15    -75     52     -8 
   -38     10     70   -266 
   -15    158   -339  -1169 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
   143    -26   -339    -66 
   -96  -1169    131   -108 
 -1169    158   -181    -34 
   150   -148   -339     14 
    21   -306    113  -1169 
   -15   -148    -22    114 
   199  -1169   -239  -1169 
    21  -1169  -1169    192 
 -1169   -306    119     34 
   136  -1169    -22    -66 
   113   -107   -107     14 
   -15     10     61   -266 
   -96  -1169    147  -1169 
  -138     52    -81     92 
 -1169    163  -1169     14 
   136     10   -139  -1169 
    85  -1169     86  -1169 
 -1169   -148    147   -266 
  -296    125    -39    -66 
 -1169   -207  -1169    229 
   -15  -1169     70     51 
   162  -1169    -22  -1169 
   129     25  -1169    -66 
 -1169   -207    119     14 
   150  -1169      7  -1169 
    21    132   -239   -266 
 -1169    139   -339     66 
 -1169     52  -1169    173 
 -1169  -1169  -1169    238 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 15 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 2.3e-499 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.454545  0.151515  0.393939 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.939394  0.060606 
 0.000000  0.000000  1.000000  0.000000 
 0.727273  0.000000  0.242424  0.030303 
 0.575758  0.424242  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.272727  0.121212  0.060606  0.545455 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.818182  0.000000  0.181818 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.393939  0.000000  0.606061  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.151515  0.212121  0.575758  0.060606 
 0.212121  0.151515  0.454545  0.181818 
 0.181818  0.272727  0.515152  0.030303 
 0.212121  0.757576  0.030303  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.636364  0.212121  0.030303  0.121212 
 0.121212  0.000000  0.787879  0.090909 
 0.000000  0.757576  0.090909  0.151515 
 0.666667  0.090909  0.030303  0.212121 
 0.272727  0.030303  0.696970  0.000000 
 0.212121  0.090909  0.272727  0.424242 
 0.939394  0.000000  0.060606  0.000000 
 0.272727  0.000000  0.000000  0.727273 
 0.000000  0.030303  0.727273  0.242424 
 0.606061  0.000000  0.272727  0.121212 
 0.515152  0.121212  0.151515  0.212121 
 0.212121  0.272727  0.484848  0.030303 
 0.121212  0.000000  0.878788  0.000000 
 0.090909  0.363636  0.181818  0.363636 
 0.000000  0.787879  0.000000  0.212121 
 0.606061  0.272727  0.121212  0.000000 
 0.424242  0.000000  0.575758  0.000000 
 0.000000  0.090909  0.878788  0.030303 
 0.030303  0.606061  0.242424  0.121212 
 0.000000  0.060606  0.000000  0.939394 
 0.212121  0.000000  0.515152  0.272727 
 0.727273  0.000000  0.272727  0.000000 
 0.575758  0.303030  0.000000  0.121212 
 0.000000  0.060606  0.727273  0.212121 
 0.666667  0.000000  0.333333  0.000000 
 0.272727  0.636364  0.060606  0.030303 
 0.000000  0.666667  0.030303  0.303030 
 0.000000  0.363636  0.000000  0.636364 
 0.000000  0.000000  0.000000  1.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 15 regular expression
--------------------------------------------------------------------------------
A[CT]TCAACGCCGG[AG][AC]A[TA]CTCACC[GA]G[GC][GA][GC][CA]GAC[AC]GC[AT][GA][TGA]A[TA][GT][AG][AT][GCA]G[CT][CT][AC][GA]G[CG]T[GTA][AG][AC][GT][AG][CA][CT][TC]T
--------------------------------------------------------------------------------




Time 281.82 secs.

********************************************************************************


********************************************************************************
MOTIF 16 MEME	width =  60  sites =  33  llr = 1592  E-value = 2.1e-452
********************************************************************************
--------------------------------------------------------------------------------
	Motif 16 Description
--------------------------------------------------------------------------------
Simplified        A  ::::::::a:::::1:2231992::11:1:1:aaa:1:2112::::aa:11123142:::
pos.-specific     C  :8:179::::a7::6622:41:::9552321:::::952553:a15::a32121::71:6
probability       G  a2a:::a::a::9a::255::18:::2:3866:::2:13334a::::::3552595:423
matrix            T  :::931:a:::31:245225:::a15283:23:::8133121::95:::3243::::571

         bits    2.4        *               *                                    
                 2.1        **              *        ***           **            
                 1.9    *   ** *            *        ***        ** ***           
                 1.7   ** **** *  *      ** **  *    ****      *** ***           
Relative         1.4 * ** ****** **      ** **  *    *****     *** ***           
Entropy          1.2 ************** *    *****  *    *****     *******     *   * 
(69.6 bits)      1.0 ************** *   ******* * *  *****     *******     * * * 
                 0.7 ****************   ******* * * *******    *******     ******
                 0.5 ****************  ******** * * *******    *******  * *******
                 0.2 ***************** ******************** ** ********** *******
                 0.0 ------------------------------------------------------------

Multilevel           GCGTCCGTAGCCGGCCTGGTAAGTCCCTCGGGAAATCCGCCGGCTCAACGGGTGGGCTTC
consensus                T      T  TTGTAC     T CG TT     TTGGC   T   CCTAA AAGGG
sequence                                         T         A  A       T  C       
                                                                         G       
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 16 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_009712.1                 554  5.48e-28 TGGGCTTAAA GCGTTCGTAGCTGGCTTGTTAAGTCTCTGGGGAAATCTTCCGGCTTAACCGGAAGGCGTC TCAGGGATAC
NC_015954.1                 563  6.62e-27 TGGGCCTAAA GCGTCCGTAGCTGGCCATGCAAGTCCGTCGGGAAATCCACCCGCTTAACGGGTGGGCGTC CGGCGGAAAC
NC_015216.1                 567  1.12e-26 TGGGCCTAAA GCGTTCGTAGCCGGTTTGATAAGTCTCTGGTGAAATCCCGCAGCTTAACTGTGGGACTTG CTGGAGATAC
NC_009515.2                 562  1.33e-26 TGGGCCTAAA GCGTCCGTAGCCGGTTTAATAAGTCTCTGGTGAAATCCTGCAGCTTAACTGTGGGAATTG CTGGAGATAC
NC_014507.1                 556  3.04e-26 TGGGCTTAAA GCGTTCGTAGCTGGACTCTTAAGTCTCTTGGGAAATCCGCCGGCTCAACCGGCGGGCGTC CAAGAGATAC
NC_013849.1                 596  7.63e-25 TGGGCCTAAA GCGTCCGTAGCCGGGCTGGTAAGTCCCCCGGGAAATCTGGCGGCTTAACCGTCAGACTGC CGGGGGATAC
NC_002607.1                 562  8.71e-25 TGGGCCTAAA GCGTCCGTAGCTGGCTGAACAAGTCCGTTGGGAAATCTGTCCGCTTAACGGGCAGGCGTC CAGCGGAAAC
NC_012028.1                 562  1.89e-24 TGGGCCTAAA GCGTCCGTAGCTGGCCGCGCAAGTCTATCGGAAAATCCACCCGCTCAACGGGTGGGCGTC CGGTAGAAAC
NC_000909.2                 567  2.75e-24 TGGGCCTAAA GCGTCCGTAGCCGGCCCGGTAAGTCTCTGCTTAAATCCTGCGGCTCAACCGCAGGGCTGG CAGAGATACT
NC_007426.1                 558  3.11e-24 TGGGCCTAAA GCGTCCGTAGCTGGCCGTGCAAGTTCGTCGGGAAATCCACTCGCTTAACGAGTGGGCGTC CGGCGAAAAC
NC_017527.1                 562  3.97e-24 TGGGTCTAAA GGGTCTGTAGCCGGCCAAGTAAGTCCCTTGGGAAATCTGGCAGCTTAACTGTCAGGCTGC TAGGGGATAC
NC_014253.1                 560  7.19e-24 TGGGTCTAAA GGGTCCGTAGCCGGTTTGATCAGTCCATTGGGAAATCTGGTGGCTTAACCGTCAGAATTC CAATGGATAC
NC_007955.1                 563  7.19e-24 TGGGTCTAAA GGGTCCGTAGCCGGTTTGATCAGTTCTTCGGGAAATCTGACAGCTCAACTGTTAGGCTTC CGGGGAATAC
NC_015416.1                 555  9.06e-24 TGGGTCTAAA GGGTCTGTAGCCGGCCGGATAAGTCTCTTGAGAAATCTGGCAGCTTAACTGTCAGGCTTT CAGGAGATAC
NC_007681.1                 572  1.27e-23 TGGGCCTAAA GCGTTCGTAGCCGGTTTGATAAGTCTTTGGTGAAAGCTTGTAGCTTAACTATAAGAATTG CTGAAGATAC
NC_007796.1                 555  1.43e-23 TGGGCTTAAA GGGTCCGTAGCTGGATATACAAGTCCCTTGAGAAATCCGCCGGCTTAACCGGTGGGCGTT CAGGGGAAAC
NC_008212.2                 564  2.47e-23 TGGGCCTAAA GCGTCCGTAGCTGGCTGCGCAAGTCCGTCGGGAAATCCACTCGCCCAACGAGTGGGCGTC CGACGGAAAC
NC_008942.1                 553  2.75e-23 TGGGTTTAAA GCGTCCGTAGCTTGACTGTTAGGTCTCTTGGGAAATCTTCGCGCTCAACGTGAAGGCGTC TAAGAGATAC
NC_013202.1                 563  3.06e-23 TGGGCCTAAA GCGTTCGTAGCCGGCCGGTCAAGTCTGTTGGGAAATCGACGCGCTCAACGCGTCGGCGTC CAGCGGAAAC
NC_007355.1                 565  1.88e-22 TGGGTCTAAA GGGTCCGTAGCCGGTTTGGTCAGTCCTCCGGGAAATCTGATAGCTCAACTATTAGGCTTT CGGGGGATAC
NC_013201.1                 564  2.74e-22 TGGGCCTAAA GCGTCCGTAGCTTGCCGTGAAAGTCTATCGGGAAATCGACGCGCTCAACGCGTCGGCTTC CGGTGGAAAC
NC_021313.1                 563  4.73e-22 TGGGCCTAAA GCGTCCGTAGCCGGCCAGACAGGTCCATCGGGAAATCTGCACGCCCAACGTGCAGGCGTC CGGTGGAAAC
NC_013926.1                 562  7.36e-22 TGAGCCTAAA GCGTCCGTAGCCGGACCCGCAAATCCCTGGGTAAATCCTGGTGCTCAACATCAGGAATTC CGGGGAGACT
NC_014205.1                 587  9.52e-22 TGGGCCTAAA GCGCCCGTAGCCGGCCTGGCAAGTCCCCTCCTAAATCCCCGGGCTCAACCCGGGGACTGG AGGGGAAACT
NC_020892.1                 556  1.04e-21 TGAGTCTAAA ACGTTCGTAGCCGGCCTAGTAAATCTTTGGGTAAATCGGGAGGCTTAACTTTCCGAATTC CGGAGAGACT
NC_014729.1                 560  3.25e-21 TGGGCCTAAA GCGTCCGTAGCTGGCCACGAAAGTCCGTCGGGAAATCCATCTGCCCAACAGATGGGCGTC CGGCGGAAAC
NC_022093.1                 596  9.34e-21 TGGGCCTAAA GCGTCCGTAGCCGGCCCGGTAAGTCCCTCCTTAAAGCCCACGGCTCAACCGTGGGAGCGG AGGGATACTG
NC_021592.1                 560  1.43e-20 TGAGCCTAAA GCGTTCGTAGCCGGTTTTGTAAATCTTCAGATAAAGCCTGAAGCTTAACTCCAGAAAGTC TGAAGAGACT
NC_005877.1                 570  1.65e-20 TGAGCCTAAA GCGTTCGTAGCCGGCTTTGTAAATCTCCAGGTAAATTCTAGCGCTTAACGTTAGATCTCC TGGAGAGACT
NC_002578.1                 563  2.66e-20 TGAGTCTAAA GCGTTCGTAACCGGTCTTATAAATCTTCAGATAAATTCTTCCGCTTAACGGAAGAACTTC TGAAGAGACT
NC_015518.1                 583  5.00e-19 TGGGCTTAAA GCGCCCGTAGCCGGCCCTGCAAGTCACTGCTTAAAGACCCGGGCTCAACCCGGGAAAGGG CAGTGATACT
NC_017461.1                 588  8.96e-19 TGGGCCTAAA GCGCCCGTAGCCGGCCCAGCAAGTTCCTGCCTAAATCATCGGGCTCAACCCGGTGATTGG TGGGAATACT
NC_009440.1                 582  2.87e-18 TGGGCTTAAA GCGCCCGTAGCCGGCCTGTAAAGTCACCGTTTAAAGACCCGGGCTCAACTCGGGGAACGG CGGTGATACT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 16 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_009712.1                       5.5e-28  553_[+16]_952
NC_015954.1                       6.6e-27  562_[+16]_950
NC_015216.1                       1.1e-26  566_[+16]_958
NC_009515.2                       1.3e-26  561_[+16]_954
NC_014507.1                         3e-26  555_[+16]_952
NC_013849.1                       7.6e-25  595_[+16]_955
NC_002607.1                       8.7e-25  561_[+16]_951
NC_012028.1                       1.9e-24  561_[+16]_948
NC_000909.2                       2.8e-24  566_[+16]_951
NC_007426.1                       3.1e-24  557_[+16]_948
NC_017527.1                         4e-24  561_[+16]_953
NC_014253.1                       7.2e-24  559_[+16]_957
NC_007955.1                       7.2e-24  562_[+16]_953
NC_015416.1                       9.1e-24  554_[+16]_953
NC_007681.1                       1.3e-23  571_[+16]_958
NC_007796.1                       1.4e-23  554_[+16]_951
NC_008212.2                       2.5e-23  563_[+16]_949
NC_008942.1                       2.8e-23  552_[+16]_952
NC_013202.1                       3.1e-23  562_[+16]_950
NC_007355.1                       1.9e-22  564_[+16]_953
NC_013201.1                       2.7e-22  563_[+16]_948
NC_021313.1                       4.7e-22  562_[+16]_948
NC_013926.1                       7.4e-22  561_[+16]_951
NC_014205.1                       9.5e-22  586_[+16]_964
NC_020892.1                         1e-21  555_[+16]_949
NC_014729.1                       3.2e-21  559_[+16]_959
NC_022093.1                       9.3e-21  595_[+16]_957
NC_021592.1                       1.4e-20  559_[+16]_951
NC_005877.1                       1.6e-20  569_[+16]_939
NC_002578.1                       2.7e-20  562_[+16]_948
NC_015518.1                         5e-19  582_[+16]_956
NC_017461.1                         9e-19  587_[+16]_954
NC_009440.1                       2.9e-18  581_[+16]_965
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 16 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 16 width=60 seqs=33
NC_009712.1              (  554) GCGTTCGTAGCTGGCTTGTTAAGTCTCTGGGGAAATCTTCCGGCTTAACCGGAAGGCGTC  1 
NC_015954.1              (  563) GCGTCCGTAGCTGGCCATGCAAGTCCGTCGGGAAATCCACCCGCTTAACGGGTGGGCGTC  1 
NC_015216.1              (  567) GCGTTCGTAGCCGGTTTGATAAGTCTCTGGTGAAATCCCGCAGCTTAACTGTGGGACTTG  1 
NC_009515.2              (  562) GCGTCCGTAGCCGGTTTAATAAGTCTCTGGTGAAATCCTGCAGCTTAACTGTGGGAATTG  1 
NC_014507.1              (  556) GCGTTCGTAGCTGGACTCTTAAGTCTCTTGGGAAATCCGCCGGCTCAACCGGCGGGCGTC  1 
NC_013849.1              (  596) GCGTCCGTAGCCGGGCTGGTAAGTCCCCCGGGAAATCTGGCGGCTTAACCGTCAGACTGC  1 
NC_002607.1              (  562) GCGTCCGTAGCTGGCTGAACAAGTCCGTTGGGAAATCTGTCCGCTTAACGGGCAGGCGTC  1 
NC_012028.1              (  562) GCGTCCGTAGCTGGCCGCGCAAGTCTATCGGAAAATCCACCCGCTCAACGGGTGGGCGTC  1 
NC_000909.2              (  567) GCGTCCGTAGCCGGCCCGGTAAGTCTCTGCTTAAATCCTGCGGCTCAACCGCAGGGCTGG  1 
NC_007426.1              (  558) GCGTCCGTAGCTGGCCGTGCAAGTTCGTCGGGAAATCCACTCGCTTAACGAGTGGGCGTC  1 
NC_017527.1              (  562) GGGTCTGTAGCCGGCCAAGTAAGTCCCTTGGGAAATCTGGCAGCTTAACTGTCAGGCTGC  1 
NC_014253.1              (  560) GGGTCCGTAGCCGGTTTGATCAGTCCATTGGGAAATCTGGTGGCTTAACCGTCAGAATTC  1 
NC_007955.1              (  563) GGGTCCGTAGCCGGTTTGATCAGTTCTTCGGGAAATCTGACAGCTCAACTGTTAGGCTTC  1 
NC_015416.1              (  555) GGGTCTGTAGCCGGCCGGATAAGTCTCTTGAGAAATCTGGCAGCTTAACTGTCAGGCTTT  1 
NC_007681.1              (  572) GCGTTCGTAGCCGGTTTGATAAGTCTTTGGTGAAAGCTTGTAGCTTAACTATAAGAATTG  1 
NC_007796.1              (  555) GGGTCCGTAGCTGGATATACAAGTCCCTTGAGAAATCCGCCGGCTTAACCGGTGGGCGTT  1 
NC_008212.2              (  564) GCGTCCGTAGCTGGCTGCGCAAGTCCGTCGGGAAATCCACTCGCCCAACGAGTGGGCGTC  1 
NC_008942.1              (  553) GCGTCCGTAGCTTGACTGTTAGGTCTCTTGGGAAATCTTCGCGCTCAACGTGAAGGCGTC  1 
NC_013202.1              (  563) GCGTTCGTAGCCGGCCGGTCAAGTCTGTTGGGAAATCGACGCGCTCAACGCGTCGGCGTC  1 
NC_007355.1              (  565) GGGTCCGTAGCCGGTTTGGTCAGTCCTCCGGGAAATCTGATAGCTCAACTATTAGGCTTT  1 
NC_013201.1              (  564) GCGTCCGTAGCTTGCCGTGAAAGTCTATCGGGAAATCGACGCGCTCAACGCGTCGGCTTC  1 
NC_021313.1              (  563) GCGTCCGTAGCCGGCCAGACAGGTCCATCGGGAAATCTGCACGCCCAACGTGCAGGCGTC  1 
NC_013926.1              (  562) GCGTCCGTAGCCGGACCCGCAAATCCCTGGGTAAATCCTGGTGCTCAACATCAGGAATTC  1 
NC_014205.1              (  587) GCGCCCGTAGCCGGCCTGGCAAGTCCCCTCCTAAATCCCCGGGCTCAACCCGGGGACTGG  1 
NC_020892.1              (  556) ACGTTCGTAGCCGGCCTAGTAAATCTTTGGGTAAATCGGGAGGCTTAACTTTCCGAATTC  1 
NC_014729.1              (  560) GCGTCCGTAGCTGGCCACGAAAGTCCGTCGGGAAATCCATCTGCCCAACAGATGGGCGTC  1 
NC_022093.1              (  596) GCGTCCGTAGCCGGCCCGGTAAGTCCCTCCTTAAAGCCCACGGCTCAACCGTGGGAGCGG  1 
NC_021592.1              (  560) GCGTTCGTAGCCGGTTTTGTAAATCTTCAGATAAAGCCTGAAGCTTAACTCCAGAAAGTC  1 
NC_005877.1              (  570) GCGTTCGTAGCCGGCTTTGTAAATCTCCAGGTAAATTCTAGCGCTTAACGTTAGATCTCC  1 
NC_002578.1              (  563) GCGTTCGTAACCGGTCTTATAAATCTTCAGATAAATTCTTCCGCTTAACGGAAGAACTTC  1 
NC_015518.1              (  583) GCGCCCGTAGCCGGCCCTGCAAGTCACTGCTTAAAGACCCGGGCTCAACCCGGGAAAGGG  1 
NC_017461.1              (  588) GCGCCCGTAGCCGGCCCAGCAAGTTCCTGCCTAAATCATCGGGCTCAACCCGGTGATTGG  1 
NC_009440.1              (  582) GCGCCCGTAGCCGGCCTGTAAAGTCACCGTTTAAAGACCCGGGCTCAACTCGGGGAACGG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 16 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 11.3348 E= 2.1e-452 
  -296  -1169    161  -1169 
 -1169    169    -81  -1169 
 -1169  -1169    165  -1169 
 -1169   -107  -1169    219 
 -1169    152  -1169     51 
 -1169    189  -1169   -166 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
   208  -1169  -1169  -1169 
  -296  -1169    161  -1169 
 -1169    198  -1169  -1169 
 -1169    139  -1169     80 
 -1169  -1169    156   -166 
 -1169  -1169    165  -1169 
   -96    125   -339     34 
 -1169    132  -1169     92 
   -64    -75    -58    134 
   -64    -75     52     34 
    36  -1169     78    -34 
  -138     52  -1169    151 
   195   -148  -1169  -1169 
   199  -1169   -239  -1169 
   -64  -1169    142  -1169 
 -1169  -1169  -1169    238 
 -1169    184  -1169   -108 
  -196     93  -1169    124 
   -96    102    -81     -8 
 -1169    -26  -1169    204 
  -138     39     -7     51 
 -1169    -75    136   -266 
   -96   -207     93     14 
  -296  -1169    100     80 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169   -107    214 
  -196    179  -1169   -166 
  -296    110   -181     80 
   -15    -75      7     66 
   -96     84      7   -108 
  -138     93    -22    -34 
     4     39     19   -166 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169   -148  -1169    224 
 -1169    102  -1169    134 
   208  -1169  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
  -196     25      7     66 
   -96    -26     70    -34 
  -196   -148     61     92 
     4     -7    -58     66 
    50   -148     78   -266 
   -96  -1169    147  -1169 
    85  -1169     78   -266 
     4    146   -339   -266 
 -1169   -207     42    142 
 -1169   -306    -39    192 
 -1169    132    -22   -108 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 16 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 2.1e-452 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.818182  0.181818  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.121212  0.000000  0.878788 
 0.000000  0.727273  0.000000  0.272727 
 0.000000  0.939394  0.000000  0.060606 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.666667  0.000000  0.333333 
 0.000000  0.000000  0.939394  0.060606 
 0.000000  0.000000  1.000000  0.000000 
 0.121212  0.606061  0.030303  0.242424 
 0.000000  0.636364  0.000000  0.363636 
 0.151515  0.151515  0.212121  0.484848 
 0.151515  0.151515  0.454545  0.242424 
 0.303030  0.000000  0.545455  0.151515 
 0.090909  0.363636  0.000000  0.545455 
 0.909091  0.090909  0.000000  0.000000 
 0.939394  0.000000  0.060606  0.000000 
 0.151515  0.000000  0.848485  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.909091  0.000000  0.090909 
 0.060606  0.484848  0.000000  0.454545 
 0.121212  0.515152  0.181818  0.181818 
 0.000000  0.212121  0.000000  0.787879 
 0.090909  0.333333  0.303030  0.272727 
 0.000000  0.151515  0.818182  0.030303 
 0.121212  0.060606  0.606061  0.212121 
 0.030303  0.000000  0.636364  0.333333 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.151515  0.848485 
 0.060606  0.878788  0.000000  0.060606 
 0.030303  0.545455  0.090909  0.333333 
 0.212121  0.151515  0.333333  0.303030 
 0.121212  0.454545  0.333333  0.090909 
 0.090909  0.484848  0.272727  0.151515 
 0.242424  0.333333  0.363636  0.060606 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.090909  0.000000  0.909091 
 0.000000  0.515152  0.000000  0.484848 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.060606  0.303030  0.333333  0.303030 
 0.121212  0.212121  0.515152  0.151515 
 0.060606  0.090909  0.484848  0.363636 
 0.242424  0.242424  0.212121  0.303030 
 0.333333  0.090909  0.545455  0.030303 
 0.121212  0.000000  0.878788  0.000000 
 0.424242  0.000000  0.545455  0.030303 
 0.242424  0.696970  0.030303  0.030303 
 0.000000  0.060606  0.424242  0.515152 
 0.000000  0.030303  0.242424  0.727273 
 0.000000  0.636364  0.272727  0.090909 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 16 regular expression
--------------------------------------------------------------------------------
GCGT[CT]CGTAGC[CT]GG[CT][CT][TG][GT][GA][TC]AAGTC[CT]C[TC][CGT]G[GT][GT]AAATC[CT][GTA][CG][CG][GCA]GCT[CT]AAC[GCT][GC][GT][TACG][GA]G[GA][CA][TG][TG][CG]
--------------------------------------------------------------------------------




Time 293.31 secs.

********************************************************************************


********************************************************************************
MOTIF 17 MEME	width =  60  sites =  33  llr = 1544  E-value = 4.6e-427
********************************************************************************
--------------------------------------------------------------------------------
	Motif 17 Description
--------------------------------------------------------------------------------
Simplified        A  1:::11242:3111::a:7::61222:a:::::31::1:9a5111:91:9a1:74:::1:
pos.-specific     C  63352:111242::15:a:6::11::::a6:a9:35:72:::451::::::::::4:::9
probability       G  :112587238229892:::::46788a:::a::65:a::::4418a19a1:9a152aa81
matrix            T  36621::44:25:1:4::33a:311::::4::1215:281::23:::::::::2:3::2:

         bits    2.4                                                             
                 2.1                 *   *      *            *         *         
                 1.9                 **  *      **  *        *         *         
                 1.7                 **  *      ** ***   *  **    ** *** *   ** *
Relative         1.4               * *** *     *** ***   * ***    ********   ** *
Entropy          1.2             * * *** *     *******   * ***    ********   ** *
(67.5 bits)      1.0  **         *** *****    ********  ******   **********  ** *
                 0.7 ***  **  *  **********  *********  *******  *********** ****
                 0.5 **** **  * *********************** ******* ************ ****
                 0.2 ********** *************************************************
                 0.0 ------------------------------------------------------------

Multilevel           CTTCGGGATGCTGGGCACACTAGGGGGACCGCCGGCGCTAAACCGGAGGAAGGAGCGGGC
consensus            TCCTC ATG AG   T  TT GT  A   T   ACT     GGT         TAT    
sequence                G   GA G                                            G    
                                                                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 17 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_017527.1                1124  1.28e-27 CCAGCATACC CTCCGGGGTGATGGGTACACTGTGGAGACCGCCGCTGCTAAAGCGGAGGAAGGAGTGGGC AACGGTAGGT
NC_007355.1                1127  1.36e-26 CCAGCATATC CTCCGGGATGATGGGTACTCTGTGGGGACCGCCGGTGTTAAATCGGAGGAAGGTGCGGGC CACGGTAGGT
NC_002607.1                1127  2.25e-26 CAGCAGTACC CTTTGGGTAGCTGGGTACATTAGGTGGACTGCCGCTGCCAAAGCGGAGGAAGGAACGGGC AACGGTAGGT
NC_015416.1                1117  2.65e-26 CCAGCGTACT CTCTGGAGTGACGGGTACACTGTGGGGACCGCCGCTGCTAAAGCGGAGGAAGGAATGGGC AACGGTAGGT
NC_007955.1                1125  9.41e-26 CCAGCATGTC CTTCGGGATGATGGGTACTCTGTGGGGACCGCTGGTGCTAAACCAGAGGAAGGTGCGGGC TACGGTAGGT
NC_007681.1                1134  1.99e-25 CCAACACAAT CTCTGGATTGGTGGGCACACTAGGGGGACCGCCAGTGATAAACTGGAGGAAGGAGTGGAC GACGGTAGGT
NC_007426.1                1122  4.10e-25 CCAGCAGCAT CTTGCGATGGCTGGGTACACTAGGGGGACTGCCGTCGCTAAGACGGAGGAAGGAACGGGC AACGGTAGGT
NC_013202.1                1128  5.42e-25 CAGCAATACC CTTGTGGTAGTTGGGTACACTAGGAGGACTGCCAACGCTAAGTTGGAGGAAGGAACGGGC AACGGTAGGT
NC_015954.1                1129  6.23e-25 CAGCATGTCC CTTGTGGATGATGGGTACTTTAGGAGGACTGCCGCCGCCAAGGCGGAGGAAGGAACGGGC AACGGTAGGT
NC_014507.1                1118  1.83e-24 CCAGCATGTT CTCCGGAATGATGGGGACACTGTTGGGACCGCCTCTGCTAAAGGGGAGGAAGGAATGGGC AACGGTAGGT
NC_013849.1                1160  2.08e-24 AGCGGGTCCC TTCGGGGACGCCGGGCACACTGGGGGGACTGCCGGCGCTAAGCCGGAGGAAGGTGCGGGC AACGGCAGGT
NC_008212.2                1129  3.06e-24 CCAGCAACAG TTTCGACTGGTTGGGTACATTAGGAGGACTGCCAGTGTTAAACTGGAGGAAGGAACGGGC AACGGTAGGT
NC_015216.1                1131  3.94e-24 AGCGGATCCT TTTTAGGATGCCGGGCACACTAAGGGGACCGCCAGTGATAAACTGGAGGAAGGAGTGGAC GACGGTAGGT
NC_008942.1                1115  1.33e-23 CCAGCAGCAT CTCCGGATGGCTGGGGACATTGTCGGGACCGCCTCTGCTAAAGGGGAGGAAGGAATGGGC AACGGTAGGT
NC_014253.1                1122  1.50e-23 CCAGCATGTT CTTCGGAACGATGGGTACTCTGTGGGGACCGCTGCTGCTAAAGCAGAGGAAGGTGCGGGC TACGGTAGGT
NC_007796.1                1117  4.67e-23 CCAGCTTGAC CTTCGGGTTGATGGGGACACTGCTCGGACCGCCTCTGCTAAAGGGGAGGAAGGAATGGGC AACGGTAGGT
NC_022093.1                1155  6.48e-23 GCTACCCGGT CCTTCGGGACCGGGGCACTCTAGGGGGACTGCCGGCGATAAGCCGGAGGAAGGTGGGGGC TACGGCAGGT
NC_014729.1                1124  1.11e-22 CCAGCAGCAG TTCCGACTGGCTGGGTACATTAGATGGACTGCCAGTGCCAAACTGGAGGAAGGAATGGGC AACGGTAGGT
NC_013201.1                1127  1.23e-22 CCAGCGATAC CCCGAGGTAGTCGGGTACACTACGGAGACCGCCGACGCTAAGTCGGAGGAAGGAACGGGC AACGGTAGGT
NC_009712.1                1116  1.36e-22 CTAGCTCGTC CTCCGGGATGGAGAGGACACTGTTGGGACCGCCTCTGCTAAAGAGGAGGAAGGAATGGGC AACGGTAGGT
NC_021313.1                1127  1.86e-22 CCAGCAACGC CGTGAGGCGGTTGGGTACATTAGGAAGACTGCCGCCGCTAAGGCGGAGGAAGGAGCGGGC AACGGTAGGT
NC_009515.2                1126  3.09e-22 AGCGGATCCT TTTTTGGATGCCGGGCACACTAAGGGGACCGCCTATGATAAATAGGAGGAAGGAGTGGAC GACGGTAGGT
NC_013926.1                1126  3.41e-22 GCCACCTGTC CCTCCGGGGGCAGAGCACACTGGGGAGACCGCCAGCGCTAAGCTGGAGGAAGGTGGGGTC AACGGTAGGT
NC_015518.1                1143  8.17e-22 GGTATCCCGG TCTCCGGATCGGGACCACACTAAGGGGACTGCCGGCGTTAAGCCGGAGGAAGGAGGGGGC CACGGCAGGT
NC_000909.2                1127  2.06e-21 GCTACCTCCT CCTCCGGGAGGAGGGCACTCATGGGGGACCGCCGGCGCTAAGCCGGAGGAAGGTGCGGGC AACGACAGGT
NC_002578.1                1123  3.82e-21 GCCAGACTGT CTTTGCGGGCAGAGGCACTTTAGAGGGACCGCCAGCGCTAAGCTGGAGGAAGGAGGGGTC GACGGCAGGT
NC_009440.1                1142  5.87e-21 GGTAACCGTC TCTCCGGAGACGGTCCACACTAGAAGGACTGCCGGTGTTAAACCGGAGGAAGGAGGGGGC CACGGCAGGT
NC_005877.1                1130  3.73e-20 GCAATTACCT ACGCGGGTAGGTAAGCACTTTGGAGAGACCGCCAGCGCTAAGCTGGAGGAAGGAGGGGTC GACGGCAGGT
NC_020892.1                1116  1.72e-19 GCTACTTCGG TCTCCGGATCGGAGGCACATTATCGGGACCGCTGACGCTAAGTCAGAGGAAGGAGAGGTC AACGGTAGGT
NC_012028.1                1125  7.47e-18 CCAGCAGCAC TGCGAAGTGGCTGGGGACAGTAGGGAGACCGCCGTGGCCAACACGGAGGAAGGAACGGGC AACGGTAGGT
NC_021592.1                1120  3.14e-17 GCAAATGTAT ATGAGAATATGCATGCACTTTAGAGAAACCGCCAGCGCTAAGCTGGAGGAAGGAGTGGTC GACGGCAGGT
NC_017461.1                1148  2.12e-15 GCGACTCACT CCTTTTGGAGTGGGGCACATTAGGGGGACTGCCGGCGTCTAAGCCGGAGGAAGGTGGGGG CCACGGCAGG
NC_014205.1                1147  3.97e-15 GCTACCCGGA GCTCCGGCTCCGGGGCACACTAGGGGGACTGCCGCCGTATAAGGCGGAGGAAGGAGGGGG CCACGGCAGG
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 17 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_017527.1                       1.3e-27  1123_[+17]_391
NC_007355.1                       1.4e-26  1126_[+17]_391
NC_002607.1                       2.2e-26  1126_[+17]_386
NC_015416.1                       2.7e-26  1116_[+17]_391
NC_007955.1                       9.4e-26  1124_[+17]_391
NC_007681.1                         2e-25  1133_[+17]_396
NC_007426.1                       4.1e-25  1121_[+17]_384
NC_013202.1                       5.4e-25  1127_[+17]_385
NC_015954.1                       6.2e-25  1128_[+17]_384
NC_014507.1                       1.8e-24  1117_[+17]_390
NC_013849.1                       2.1e-24  1159_[+17]_391
NC_008212.2                       3.1e-24  1128_[+17]_384
NC_015216.1                       3.9e-24  1130_[+17]_394
NC_008942.1                       1.3e-23  1114_[+17]_390
NC_014253.1                       1.5e-23  1121_[+17]_395
NC_007796.1                       4.7e-23  1116_[+17]_389
NC_022093.1                       6.5e-23  1154_[+17]_398
NC_014729.1                       1.1e-22  1123_[+17]_395
NC_013201.1                       1.2e-22  1126_[+17]_385
NC_009712.1                       1.4e-22  1115_[+17]_390
NC_021313.1                       1.9e-22  1126_[+17]_384
NC_009515.2                       3.1e-22  1125_[+17]_390
NC_013926.1                       3.4e-22  1125_[+17]_387
NC_015518.1                       8.2e-22  1142_[+17]_396
NC_000909.2                       2.1e-21  1126_[+17]_391
NC_002578.1                       3.8e-21  1122_[+17]_388
NC_009440.1                       5.9e-21  1141_[+17]_405
NC_005877.1                       3.7e-20  1129_[+17]_379
NC_020892.1                       1.7e-19  1115_[+17]_389
NC_012028.1                       7.5e-18  1124_[+17]_385
NC_021592.1                       3.1e-17  1119_[+17]_391
NC_017461.1                       2.1e-15  1147_[+17]_394
NC_014205.1                         4e-15  1146_[+17]_404
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 17 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 17 width=60 seqs=33
NC_017527.1              ( 1124) CTCCGGGGTGATGGGTACACTGTGGAGACCGCCGCTGCTAAAGCGGAGGAAGGAGTGGGC  1 
NC_007355.1              ( 1127) CTCCGGGATGATGGGTACTCTGTGGGGACCGCCGGTGTTAAATCGGAGGAAGGTGCGGGC  1 
NC_002607.1              ( 1127) CTTTGGGTAGCTGGGTACATTAGGTGGACTGCCGCTGCCAAAGCGGAGGAAGGAACGGGC  1 
NC_015416.1              ( 1117) CTCTGGAGTGACGGGTACACTGTGGGGACCGCCGCTGCTAAAGCGGAGGAAGGAATGGGC  1 
NC_007955.1              ( 1125) CTTCGGGATGATGGGTACTCTGTGGGGACCGCTGGTGCTAAACCAGAGGAAGGTGCGGGC  1 
NC_007681.1              ( 1134) CTCTGGATTGGTGGGCACACTAGGGGGACCGCCAGTGATAAACTGGAGGAAGGAGTGGAC  1 
NC_007426.1              ( 1122) CTTGCGATGGCTGGGTACACTAGGGGGACTGCCGTCGCTAAGACGGAGGAAGGAACGGGC  1 
NC_013202.1              ( 1128) CTTGTGGTAGTTGGGTACACTAGGAGGACTGCCAACGCTAAGTTGGAGGAAGGAACGGGC  1 
NC_015954.1              ( 1129) CTTGTGGATGATGGGTACTTTAGGAGGACTGCCGCCGCCAAGGCGGAGGAAGGAACGGGC  1 
NC_014507.1              ( 1118) CTCCGGAATGATGGGGACACTGTTGGGACCGCCTCTGCTAAAGGGGAGGAAGGAATGGGC  1 
NC_013849.1              ( 1160) TTCGGGGACGCCGGGCACACTGGGGGGACTGCCGGCGCTAAGCCGGAGGAAGGTGCGGGC  1 
NC_008212.2              ( 1129) TTTCGACTGGTTGGGTACATTAGGAGGACTGCCAGTGTTAAACTGGAGGAAGGAACGGGC  1 
NC_015216.1              ( 1131) TTTTAGGATGCCGGGCACACTAAGGGGACCGCCAGTGATAAACTGGAGGAAGGAGTGGAC  1 
NC_008942.1              ( 1115) CTCCGGATGGCTGGGGACATTGTCGGGACCGCCTCTGCTAAAGGGGAGGAAGGAATGGGC  1 
NC_014253.1              ( 1122) CTTCGGAACGATGGGTACTCTGTGGGGACCGCTGCTGCTAAAGCAGAGGAAGGTGCGGGC  1 
NC_007796.1              ( 1117) CTTCGGGTTGATGGGGACACTGCTCGGACCGCCTCTGCTAAAGGGGAGGAAGGAATGGGC  1 
NC_022093.1              ( 1155) CCTTCGGGACCGGGGCACTCTAGGGGGACTGCCGGCGATAAGCCGGAGGAAGGTGGGGGC  1 
NC_014729.1              ( 1124) TTCCGACTGGCTGGGTACATTAGATGGACTGCCAGTGCCAAACTGGAGGAAGGAATGGGC  1 
NC_013201.1              ( 1127) CCCGAGGTAGTCGGGTACACTACGGAGACCGCCGACGCTAAGTCGGAGGAAGGAACGGGC  1 
NC_009712.1              ( 1116) CTCCGGGATGGAGAGGACACTGTTGGGACCGCCTCTGCTAAAGAGGAGGAAGGAATGGGC  1 
NC_021313.1              ( 1127) CGTGAGGCGGTTGGGTACATTAGGAAGACTGCCGCCGCTAAGGCGGAGGAAGGAGCGGGC  1 
NC_009515.2              ( 1126) TTTTTGGATGCCGGGCACACTAAGGGGACCGCCTATGATAAATAGGAGGAAGGAGTGGAC  1 
NC_013926.1              ( 1126) CCTCCGGGGGCAGAGCACACTGGGGAGACCGCCAGCGCTAAGCTGGAGGAAGGTGGGGTC  1 
NC_015518.1              ( 1143) TCTCCGGATCGGGACCACACTAAGGGGACTGCCGGCGTTAAGCCGGAGGAAGGAGGGGGC  1 
NC_000909.2              ( 1127) CCTCCGGGAGGAGGGCACTCATGGGGGACCGCCGGCGCTAAGCCGGAGGAAGGTGCGGGC  1 
NC_002578.1              ( 1123) CTTTGCGGGCAGAGGCACTTTAGAGGGACCGCCAGCGCTAAGCTGGAGGAAGGAGGGGTC  1 
NC_009440.1              ( 1142) TCTCCGGAGACGGTCCACACTAGAAGGACTGCCGGTGTTAAACCGGAGGAAGGAGGGGGC  1 
NC_005877.1              ( 1130) ACGCGGGTAGGTAAGCACTTTGGAGAGACCGCCAGCGCTAAGCTGGAGGAAGGAGGGGTC  1 
NC_020892.1              ( 1116) TCTCCGGATCGGAGGCACATTATCGGGACCGCTGACGCTAAGTCAGAGGAAGGAGAGGTC  1 
NC_012028.1              ( 1125) TGCGAAGTGGCTGGGGACAGTAGGGAGACCGCCGTGGCCAACACGGAGGAAGGAACGGGC  1 
NC_021592.1              ( 1120) ATGAGAATATGCATGCACTTTAGAGAAACCGCCAGCGCTAAGCTGGAGGAAGGAGTGGTC  1 
NC_017461.1              ( 1148) CCTTTTGGAGTGGGGCACATTAGGGGGACTGCCGGCGTCTAAGCCGGAGGAAGGTGGGGG  1 
NC_014205.1              ( 1147) GCTCCGGCTCCGGGGCACACTAGGGGGACTGCCGCCGTATAAGGCGGAGGAAGGAGGGGG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 17 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 11.3348 E= 4.6e-427 
  -196    132   -339     51 
 -1169     25   -239    173 
 -1169     39   -239    166 
  -296    102    -58     34 
   -96     -7     70    -66 
   -96   -306    136   -266 
   -15   -207    119  -1169 
    62   -207    -58     92 
     4   -207    -22    114 
  -296    -75    131   -266 
    21     52    -58    -34 
  -138    -48    -58    142 
   -96  -1169    147  -1169 
   -96  -1169    136   -166 
 -1169   -207    156  -1169 
 -1169     84   -107    104 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
   162  -1169  -1169     51 
 -1169    132   -339     80 
  -296  -1169  -1169    234 
   136  -1169     19   -266 
  -138   -207     86     51 
   -64   -207    113   -108 
   -64   -306    125   -166 
   -15  -1169    131  -1169 
  -296  -1169    161  -1169 
   208  -1169  -1169  -1169 
 -1169    198  -1169  -1169 
 -1169    125  -1169    104 
 -1169  -1169    165  -1169 
 -1169    198  -1169  -1169 
 -1169    184  -1169   -108 
    21  -1169     86    -34 
   -96     39     61   -166 
 -1169     93   -339    134 
 -1169  -1169    165  -1169 
   -96    146  -1169     -8 
  -296    -75  -1169    209 
   199  -1169  -1169   -166 
   208  -1169  -1169  -1169 
   121   -306     42  -1169 
  -196     74     19    -34 
  -196    110   -139     51 
  -138   -207    142  -1169 
 -1169  -1169    165  -1169 
   199  -1169   -239  -1169 
  -196  -1169    156  -1169 
 -1169  -1169    165  -1169 
   199  -1169   -239  -1169 
   208  -1169  -1169  -1169 
  -196  -1169    156  -1169 
 -1169  -1169    165  -1169 
   162  -1169   -239     14 
    85  -1169     78   -266 
  -296     63    -39     80 
 -1169  -1169    165  -1169 
 -1169  -1169    165  -1169 
  -138  -1169    125    -34 
 -1169    189   -239  -1169 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 17 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 4.6e-427 
 0.060606  0.636364  0.030303  0.272727 
 0.000000  0.303030  0.060606  0.636364 
 0.000000  0.333333  0.060606  0.606061 
 0.030303  0.515152  0.212121  0.242424 
 0.121212  0.242424  0.515152  0.121212 
 0.121212  0.030303  0.818182  0.030303 
 0.212121  0.060606  0.727273  0.000000 
 0.363636  0.060606  0.212121  0.363636 
 0.242424  0.060606  0.272727  0.424242 
 0.030303  0.151515  0.787879  0.030303 
 0.272727  0.363636  0.212121  0.151515 
 0.090909  0.181818  0.212121  0.515152 
 0.121212  0.000000  0.878788  0.000000 
 0.121212  0.000000  0.818182  0.060606 
 0.000000  0.060606  0.939394  0.000000 
 0.000000  0.454545  0.151515  0.393939 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.727273  0.000000  0.000000  0.272727 
 0.000000  0.636364  0.030303  0.333333 
 0.030303  0.000000  0.000000  0.969697 
 0.606061  0.000000  0.363636  0.030303 
 0.090909  0.060606  0.575758  0.272727 
 0.151515  0.060606  0.696970  0.090909 
 0.151515  0.030303  0.757576  0.060606 
 0.212121  0.000000  0.787879  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.606061  0.000000  0.393939 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.909091  0.000000  0.090909 
 0.272727  0.000000  0.575758  0.151515 
 0.121212  0.333333  0.484848  0.060606 
 0.000000  0.484848  0.030303  0.484848 
 0.000000  0.000000  1.000000  0.000000 
 0.121212  0.696970  0.000000  0.181818 
 0.030303  0.151515  0.000000  0.818182 
 0.939394  0.000000  0.000000  0.060606 
 1.000000  0.000000  0.000000  0.000000 
 0.545455  0.030303  0.424242  0.000000 
 0.060606  0.424242  0.363636  0.151515 
 0.060606  0.545455  0.121212  0.272727 
 0.090909  0.060606  0.848485  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.939394  0.000000  0.060606  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.939394  0.000000  0.060606  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.727273  0.000000  0.060606  0.212121 
 0.424242  0.000000  0.545455  0.030303 
 0.030303  0.393939  0.242424  0.333333 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.090909  0.000000  0.757576  0.151515 
 0.000000  0.939394  0.060606  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 17 regular expression
--------------------------------------------------------------------------------
[CT][TC][TC][CTG][GC]G[GA][ATG][TGA]G[CAG][TG]GGG[CT]AC[AT][CT]T[AG][GT]GG[GA]GAC[CT]GCC[GA][GC][CT]GCTAA[AG][CG][CT]GGAGGAAGG[AT][GA][CTG]GGGC
--------------------------------------------------------------------------------




Time 304.38 secs.

********************************************************************************


********************************************************************************
MOTIF 18 MEME	width =  60  sites =  33  llr = 1394  E-value = 1.5e-364
********************************************************************************
--------------------------------------------------------------------------------
	Motif 18 Description
--------------------------------------------------------------------------------
Simplified        A  3::::5:a7:::31:789:::::a:65::13a:1::1a::::151:3172533112111:
pos.-specific     C  79:341a:3::9:5:32146:7::4:11::1:76981::::853142611:221352152
probability       G  :1:1:4::::a:64a:::5:a:a:1449a85:2:::8:a:a:2:5451::2238424423
matrix            T  ::a66::::a:1::::::13:3::5::::21:1212:::a:1222212272321223434

         bits    2.4   *      *                                                  
                 2.1   *      *             *             * *                    
                 1.9   *   ** *             *       *     * *                    
                 1.7   *   ** **      *    **    *  *     * *                    
Relative         1.4  **   ** ***  *  *  * **    *  *  *  ****                   
Entropy          1.2  ** * ******  ****  ****   **  *  ** *****      *           
(61.0 bits)      1.0 ***** ******  **** ******* **  *  ** *****      **          
                 0.7 ************* **** ******* *** *********** *    **   *      
                 0.5 ****************************** *********** * * ****  *    **
                 0.2 ********************************************** ****  *** ***
                 0.0 ------------------------------------------------------------

Multilevel           CCTTTACAATGCGCGAAAGCGCGATAAGGGGACCCCGAGTGCCAGCGCATAAAGGCGGCT
consensus            A  CCG  C   AG C  CT T  CGG   A  T        GCTGATTATTG C TTTG
sequence                                                        T T     G  T C  C
                                                                        C        
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 18 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_014729.1                 392  1.43e-26 AGGCGCGAAA CCTTTACACTGCACGCAAGTGCGATAAGGGGACTCCGAGTGCGAGGGCATATAGTCCTCG CTTTTGAGAA
NC_013202.1                 395  1.45e-25 AGGCGCGAAA CCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGCCCTCG CTTTTCTGTA
NC_013201.1                 396  1.45e-25 AGGCGCGAAA CCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGCCCTCG CTTTTCTCGA
NC_014253.1                 393  2.08e-25 AGGCGCGAAA CCTTTACACTGCGGGAAACCGCGATAAGGGGACACTGAGTGCCAGCATATAATGCTGGCT GTCCGTATGT
NC_017527.1                 395  1.36e-24 AGGCGCGAAA ACTTTACAATGCGGGAAACCGTGATAAGGGAATCTCGAGTGCCAGCATATAATGTTGGCT GTCCAGATGC
NC_007426.1                 390  2.57e-24 AGGCGCGAAA CCTTTACACTGCACGACAGTGCGATAGGGGGACACCGAGTGCGAGGGCATAGAGCCCTCG CTTTTCTGAA
NC_021313.1                 395  4.78e-24 AGGCGCGAAA CCTTTACACTGCACGAGAGTGCGATAGGGGGACCCCGAGTGCGAGGGCATACAGTCCTCG CTTTTCACCA
NC_008212.2                 396  7.52e-24 AGGCGCGAAA CCTTTACACTGCACGCACGTGCGATAAGGGGACTCCGAGTGCGAGGGCATATCGTCCTCG CTTTCGTGTA
NC_015954.1                 395  1.79e-22 AGGCGCGAAA CCTTTACACTGCACGCCAGTGCGATAAGGGAACCCCGAGTGAAAGGGCATATCGCCCTTT CTTTTCTGAA
NC_007355.1                 398  1.79e-22 AGGCGCGAAA ACTTTACAATGCGGGAAACCGTGATAAGGGGACACCGAGTGCTAGCATCATATGCTGGCT GTCCAGGTGT
NC_002607.1                 394  2.61e-22 AGGCGCGAAA CCTTTACACTGTACGAAAGTGCGATAAGGGGACTCCGAGTGTGAAGGCATAGAGCCTTCA CTTTTGTACA
NC_014507.1                 393  6.16e-22 AGGCGCGAAA ACTTTACAATGCAGGAAACTGTGATAAGGGAACCCCGAGTGCTCGTACACGCGAGCTGTC CAGGTGTGCA
NC_009712.1                 391  6.94e-22 AGGCGCGAAA ACTTTGCAATGCGAGAAATCGTGACAAGGGAACTCCGAGTGCCTGTAAAATCAGGCTGTC CGTCAGTGTA
NC_013926.1                 395  1.11e-21 AGGCGCGAAA CCTTCGCAATGCGCGAAAGCGCGACGAGGGGAGCCCGAGTGCCCTTCCTTTTGGGAGGGC TTTTCCGGAG
NC_007955.1                 397  1.11e-21 AGGCGCGAAA TCTTTACAATGCGGGAAACCGCGATAAGGGGACACCGAGTGCCAGCATTTATGTTGGCTG TCCACATGTG
NC_012028.1                 394  1.98e-21 AGGCGCGAAA CCTTTACACTGCACGCCAGTGCGATAAGGGAATCCCAAGTGCGTAGGCATAGAGCCTACG CTTTTGTACA
NC_008942.1                 390  1.12e-20 AGGCGCGCAA ACTTTACAATGCGAGCAATCGTGATAAGGAAACCCTGAGTGCCTGTCGATGCAGGCTGTT CATATATCTA
NC_000909.2                 401  1.38e-20 AGGCGCGAAA CCTCCGCAATGCGCGAAAGCGCGACGGGGGGACCCCGAGTGCCCACGCCCTGCGTGGGCT TTTCCGGAGT
NC_007796.1                 392  4.15e-20 AGGCGCGAAA ACTTTACCATGCGGGCAACCGTGATAAGGAAACCCCGAGTGCCAGCACAGGCTGGCTGTC CACCAGTGTA
NC_015416.1                 388  8.12e-20 AGGCGCGAAA ACTTTACAATGCTGGCAACAGCGATAAGGGAACCTCGAGTGCCAGGTTACAAATCTGGCT GTCGAGATGC
NC_014205.1                 422  2.03e-19 AGGCGCGAAA CCTCCGCAATGCGGGCAACCGTGACGGGGTCACCCCGAGTGCCCCCTAATTAGGGGGCTT TTCCCCGCTG
NC_002578.1                 395  2.03e-19 AGGCGCGAAA ACTGTGCAATGCGCGAAAGCGCGACACGGGGAGCCTGAGTGCCTTGACTTTTTGTCAAGG CTTTTCTGAT
NC_015216.1                 400  5.80e-19 AGGCGCGAAA CCTCCGCAATGCGAGCAATCGCGACGGGGGGACCCCAAGTGCCACTCTTAACGGGGTGGC TTTTCTGAAG
NC_013849.1                 429  7.47e-19 AGGCGCGAAA CCTCCGCAATGCGGGAAACCGCGACGGGGTCAGCCGGAGTGCCCGCGCATCGCGCGGGCT GTCGGGGAGC
NC_022093.1                 430  5.04e-18 AGGGGCGAAA CTTCCGCAATGCGGGAAACCGTGACGGAGTCACCCCGAGTGCCACCCGATGAGGGTGGCT TTTGCCCGGT
NC_021592.1                 394  6.80e-18 AGGCGCGAAC ACTGTGCAATGCGCGAAAGCGCGACACGGGGAGCTTGAGTGTCTTGGCATAGCCAAGACT TTTCTCATTC
NC_020892.1                 389  1.22e-17 AGTCGCGAAA ACTTCACAATGGGCGAAAGCCCGATGAGGGAATTCCAAGTGCATGCACATTTGTGTATGC TTTTCTTCAG
NC_005877.1                 403  2.15e-17 AGGCGCGAAA CCTGTGCAATGCGCGCAAGCGCGACACGGGGAGCTTGAGTGTCTTGGCAAAAGCCAAGAC TTTTCTTATG
NC_017461.1                 422  3.98e-17 AGGCGGGAAA CCTCCGCAATGCGGTAACCCGTGACGGGGTCACCCCGAGTGCTCTCCTTTTGGAGAGCTT TTCCCTGCTG
NC_009440.1                 419  3.98e-17 AGGCGCGGAA CGTCCCCAATGCGGGAAACCGTGAGGGCGTTACCCCTAGTGCCCTCGCAAGAGGGCTTTT CTCCACTCCA
NC_007681.1                 405  6.76e-17 AGGCGCGAAA CCTCCGCAATGTACGCAAGTGCGACGGGGGGATCCCAAGTGTTATTCTTAACAGAATAAC TTTTCATTAG
NC_015518.1                 420  3.89e-15 AGGCGCGAAA CGTCCCCAATGCGGGAAACCGTGAGGGCGCTACCCCCAGTGCTCCCGAAAGGGAGCTTTT CCCCGCTTTA
NC_009515.2                 394  4.38e-13 AGGCGCGAAA CCTCCGCAATGTGAGAAATCGCGACGGGGGGGATCCCAAGTGCCATTCTTAACGGGATGG CTTTTCATTA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 18 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_014729.1                       1.4e-26  391_[+18]_1127
NC_013202.1                       1.5e-25  394_[+18]_1118
NC_013201.1                       1.5e-25  395_[+18]_1116
NC_014253.1                       2.1e-25  392_[+18]_1124
NC_017527.1                       1.4e-24  394_[+18]_1120
NC_007426.1                       2.6e-24  389_[+18]_1116
NC_021313.1                       4.8e-24  394_[+18]_1116
NC_008212.2                       7.5e-24  395_[+18]_1117
NC_015954.1                       1.8e-22  394_[+18]_1118
NC_007355.1                       1.8e-22  397_[+18]_1120
NC_002607.1                       2.6e-22  393_[+18]_1119
NC_014507.1                       6.2e-22  392_[+18]_1115
NC_009712.1                       6.9e-22  390_[+18]_1115
NC_013926.1                       1.1e-21  394_[+18]_1118
NC_007955.1                       1.1e-21  396_[+18]_1119
NC_012028.1                         2e-21  393_[+18]_1116
NC_008942.1                       1.1e-20  389_[+18]_1115
NC_000909.2                       1.4e-20  400_[+18]_1117
NC_007796.1                       4.2e-20  391_[+18]_1114
NC_015416.1                       8.1e-20  387_[+18]_1120
NC_014205.1                         2e-19  421_[+18]_1129
NC_002578.1                         2e-19  394_[+18]_1116
NC_015216.1                       5.8e-19  399_[+18]_1125
NC_013849.1                       7.5e-19  428_[+18]_1122
NC_022093.1                         5e-18  429_[+18]_1123
NC_021592.1                       6.8e-18  393_[+18]_1117
NC_020892.1                       1.2e-17  388_[+18]_1116
NC_005877.1                       2.2e-17  402_[+18]_1106
NC_017461.1                         4e-17  421_[+18]_1120
NC_009440.1                         4e-17  418_[+18]_1128
NC_007681.1                       6.8e-17  404_[+18]_1125
NC_015518.1                       3.9e-15  419_[+18]_1119
NC_009515.2                       4.4e-13  393_[+18]_1122
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 18 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 18 width=60 seqs=33
NC_014729.1              (  392) CCTTTACACTGCACGCAAGTGCGATAAGGGGACTCCGAGTGCGAGGGCATATAGTCCTCG  1 
NC_013202.1              (  395) CCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGCCCTCG  1 
NC_013201.1              (  396) CCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGCCCTCG  1 
NC_014253.1              (  393) CCTTTACACTGCGGGAAACCGCGATAAGGGGACACTGAGTGCCAGCATATAATGCTGGCT  1 
NC_017527.1              (  395) ACTTTACAATGCGGGAAACCGTGATAAGGGAATCTCGAGTGCCAGCATATAATGTTGGCT  1 
NC_007426.1              (  390) CCTTTACACTGCACGACAGTGCGATAGGGGGACACCGAGTGCGAGGGCATAGAGCCCTCG  1 
NC_021313.1              (  395) CCTTTACACTGCACGAGAGTGCGATAGGGGGACCCCGAGTGCGAGGGCATACAGTCCTCG  1 
NC_008212.2              (  396) CCTTTACACTGCACGCACGTGCGATAAGGGGACTCCGAGTGCGAGGGCATATCGTCCTCG  1 
NC_015954.1              (  395) CCTTTACACTGCACGCCAGTGCGATAAGGGAACCCCGAGTGAAAGGGCATATCGCCCTTT  1 
NC_007355.1              (  398) ACTTTACAATGCGGGAAACCGTGATAAGGGGACACCGAGTGCTAGCATCATATGCTGGCT  1 
NC_002607.1              (  394) CCTTTACACTGTACGAAAGTGCGATAAGGGGACTCCGAGTGTGAAGGCATAGAGCCTTCA  1 
NC_014507.1              (  393) ACTTTACAATGCAGGAAACTGTGATAAGGGAACCCCGAGTGCTCGTACACGCGAGCTGTC  1 
NC_009712.1              (  391) ACTTTGCAATGCGAGAAATCGTGACAAGGGAACTCCGAGTGCCTGTAAAATCAGGCTGTC  1 
NC_013926.1              (  395) CCTTCGCAATGCGCGAAAGCGCGACGAGGGGAGCCCGAGTGCCCTTCCTTTTGGGAGGGC  1 
NC_007955.1              (  397) TCTTTACAATGCGGGAAACCGCGATAAGGGGACACCGAGTGCCAGCATTTATGTTGGCTG  1 
NC_012028.1              (  394) CCTTTACACTGCACGCCAGTGCGATAAGGGAATCCCAAGTGCGTAGGCATAGAGCCTACG  1 
NC_008942.1              (  390) ACTTTACAATGCGAGCAATCGTGATAAGGAAACCCTGAGTGCCTGTCGATGCAGGCTGTT  1 
NC_000909.2              (  401) CCTCCGCAATGCGCGAAAGCGCGACGGGGGGACCCCGAGTGCCCACGCCCTGCGTGGGCT  1 
NC_007796.1              (  392) ACTTTACCATGCGGGCAACCGTGATAAGGAAACCCCGAGTGCCAGCACAGGCTGGCTGTC  1 
NC_015416.1              (  388) ACTTTACAATGCTGGCAACAGCGATAAGGGAACCTCGAGTGCCAGGTTACAAATCTGGCT  1 
NC_014205.1              (  422) CCTCCGCAATGCGGGCAACCGTGACGGGGTCACCCCGAGTGCCCCCTAATTAGGGGGCTT  1 
NC_002578.1              (  395) ACTGTGCAATGCGCGAAAGCGCGACACGGGGAGCCTGAGTGCCTTGACTTTTTGTCAAGG  1 
NC_015216.1              (  400) CCTCCGCAATGCGAGCAATCGCGACGGGGGGACCCCAAGTGCCACTCTTAACGGGGTGGC  1 
NC_013849.1              (  429) CCTCCGCAATGCGGGAAACCGCGACGGGGTCAGCCGGAGTGCCCGCGCATCGCGCGGGCT  1 
NC_022093.1              (  430) CTTCCGCAATGCGGGAAACCGTGACGGAGTCACCCCGAGTGCCACCCGATGAGGGTGGCT  1 
NC_021592.1              (  394) ACTGTGCAATGCGCGAAAGCGCGACACGGGGAGCTTGAGTGTCTTGGCATAGCCAAGACT  1 
NC_020892.1              (  389) ACTTCACAATGGGCGAAAGCCCGATGAGGGAATTCCAAGTGCATGCACATTTGTGTATGC  1 
NC_005877.1              (  403) CCTGTGCAATGCGCGCAAGCGCGACACGGGGAGCTTGAGTGTCTTGGCAAAAGCCAAGAC  1 
NC_017461.1              (  422) CCTCCGCAATGCGGTAACCCGTGACGGGGTCACCCCGAGTGCTCTCCTTTTGGAGAGCTT  1 
NC_009440.1              (  419) CGTCCCCAATGCGGGAAACCGTGAGGGCGTTACCCCTAGTGCCCTCGCAAGAGGGCTTTT  1 
NC_007681.1              (  405) CCTCCGCAATGTACGCAAGTGCGACGGGGGGATCCCAAGTGTTATTCTTAACAGAATAAC  1 
NC_015518.1              (  420) CGTCCCCAATGCGGGAAACCGTGAGGGCGCTACCCCCAGTGCTCCCGAAAGGGAGCTTTT  1 
NC_009515.2              (  394) CCTCCGCAATGTGAGAAATCGCGACGGGGGGGATCCCAAGTGCCATTCTTAACGGGATGG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 18 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 10.6035 E= 1.5e-364 
    36    139  -1169   -266 
 -1169    184   -239   -266 
 -1169  -1169  -1169    238 
 -1169     25   -181    166 
 -1169     52  -1169    173 
   121   -207     31  -1169 
 -1169    198  -1169  -1169 
   204   -306  -1169  -1169 
   156     25  -1169  -1169 
 -1169  -1169  -1169    238 
 -1169  -1169    165  -1169 
 -1169    179   -339   -108 
    50  -1169    100   -266 
   -96     93     31  -1169 
 -1169  -1169    161   -266 
   150     39  -1169  -1169 
   179    -75   -339  -1169 
   199   -207  -1169  -1169 
 -1169     63     61    -66 
  -296    132  -1169     80 
 -1169   -306    161  -1169 
 -1169    139  -1169     80 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169     63   -239    151 
   143  -1169     19  -1169 
   104   -148     42  -1169 
  -296   -207    151  -1169 
 -1169  -1169    165  -1169 
  -196   -306    125    -34 
    21   -107     78   -166 
   204  -1169   -339  -1169 
  -296    146   -107    -66 
   -96    132  -1169     34 
 -1169    179  -1169    -66 
 -1169    169   -339    -34 
   -96   -207    131   -266 
   208  -1169  -1169  -1169 
  -296  -1169    161  -1169 
 -1169  -1169   -339    234 
 -1169  -1169    161   -266 
  -296    169   -339    -66 
  -196    110    -39    -34 
   113     10  -1169     14 
   -96   -107     78     14 
 -1169     63     31     14 
    21    -48     52   -108 
  -138    125   -239     34 
   162   -207  -1169     14 
   -15   -148   -339    180 
   121   -306    -81     34 
    21    -26    -39     51 
    50    -48      7    -34 
  -138   -207    125   -108 
  -196     39     31     14 
   -64     93    -81     -8 
   -96    -26     19     66 
   -96   -148     42     92 
  -196     93   -107     66 
  -296     -7     -7    114 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 18 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 1.5e-364 
 0.303030  0.666667  0.000000  0.030303 
 0.000000  0.909091  0.060606  0.030303 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.303030  0.090909  0.606061 
 0.000000  0.363636  0.000000  0.636364 
 0.545455  0.060606  0.393939  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.969697  0.030303  0.000000  0.000000 
 0.696970  0.303030  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.878788  0.030303  0.090909 
 0.333333  0.000000  0.636364  0.030303 
 0.121212  0.484848  0.393939  0.000000 
 0.000000  0.000000  0.969697  0.030303 
 0.666667  0.333333  0.000000  0.000000 
 0.818182  0.151515  0.030303  0.000000 
 0.939394  0.060606  0.000000  0.000000 
 0.000000  0.393939  0.484848  0.121212 
 0.030303  0.636364  0.000000  0.333333 
 0.000000  0.030303  0.969697  0.000000 
 0.000000  0.666667  0.000000  0.333333 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.393939  0.060606  0.545455 
 0.636364  0.000000  0.363636  0.000000 
 0.484848  0.090909  0.424242  0.000000 
 0.030303  0.060606  0.909091  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.060606  0.030303  0.757576  0.151515 
 0.272727  0.121212  0.545455  0.060606 
 0.969697  0.000000  0.030303  0.000000 
 0.030303  0.696970  0.151515  0.121212 
 0.121212  0.636364  0.000000  0.242424 
 0.000000  0.878788  0.000000  0.121212 
 0.000000  0.818182  0.030303  0.151515 
 0.121212  0.060606  0.787879  0.030303 
 1.000000  0.000000  0.000000  0.000000 
 0.030303  0.000000  0.969697  0.000000 
 0.000000  0.000000  0.030303  0.969697 
 0.000000  0.000000  0.969697  0.030303 
 0.030303  0.818182  0.030303  0.121212 
 0.060606  0.545455  0.242424  0.151515 
 0.515152  0.272727  0.000000  0.212121 
 0.121212  0.121212  0.545455  0.212121 
 0.000000  0.393939  0.393939  0.212121 
 0.272727  0.181818  0.454545  0.090909 
 0.090909  0.606061  0.060606  0.242424 
 0.727273  0.060606  0.000000  0.212121 
 0.212121  0.090909  0.030303  0.666667 
 0.545455  0.030303  0.181818  0.242424 
 0.272727  0.212121  0.242424  0.272727 
 0.333333  0.181818  0.333333  0.151515 
 0.090909  0.060606  0.757576  0.090909 
 0.060606  0.333333  0.393939  0.212121 
 0.151515  0.484848  0.181818  0.181818 
 0.121212  0.212121  0.363636  0.303030 
 0.121212  0.090909  0.424242  0.363636 
 0.060606  0.484848  0.151515  0.303030 
 0.030303  0.242424  0.303030  0.424242 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 18 regular expression
--------------------------------------------------------------------------------
[CA]CT[TC][TC][AG]CA[AC]TGC[GA][CG]G[AC]AA[GC][CT]G[CT]GA[TC][AG][AG]GGG[GA]AC[CT]CCGAGTGC[CG][ACT][GT][CGT][GA][CT][AT][TA][AT][ATGC][AG]G[GCT]C[GTC][GT][CT][TGC]
--------------------------------------------------------------------------------




Time 315.26 secs.

********************************************************************************


********************************************************************************
MOTIF 19 MEME	width =  60  sites =  33  llr = 1156  E-value = 3.5e-267
********************************************************************************
--------------------------------------------------------------------------------
	Motif 19 Description
--------------------------------------------------------------------------------
Simplified        A  :::877::a:::1a11241:12:226::a::1:212311113312:13531124321221
pos.-specific     C  ::a:3:7a:8aa:::1:::1153::::::::76323125432:11231:1342:235223
probability       G  a::2:12:::::9:917698212884:a:a92:224211222465554332255422125
matrix            T  :a:::21::2:::::82::17351::a::::14251562443312312344421133431

         bits    2.4  *                                                          
                 2.1  *      *    *            * *                               
                 1.9  **    ** ** *            * *                               
                 1.7 ***    ** ** *            ****                              
Relative         1.4 ****   ***** *    *       ****                              
Entropy          1.2 *****  *********  *       ***** *                           
(50.5 bits)      1.0 **************** **     ******* *                           
                 0.7 **************** ****  ******** *                           
                 0.5 ********************************* *  *       *  *           
                 0.2 ********************************* * ******************  ** *
                 0.0 ------------------------------------------------------------

Multilevel           GTCAAACCACCCGAGTGGGGTCTGGATGAGGCCCTGTTCCTTGGGGGGATTCGGGCCTTG
consensus                C G          A   TC  G     GTACCACTTCAA  TCAGACT AATTACC
sequence                                              G       CT  C TTGGG   G CG 
                                                                               A 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 19 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_017527.1                1399  4.07e-22 CACACCGCCC GTCAAACCACCCGAGTAGGGTCTGGATGAGGGTGTGTTTCCTTGACACATTCGAATCTGG GCTTTGCAAG
NC_008212.2                1403  4.81e-22 CACACCGCCC GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCTATCATTGATAGTCGAATCTGGGCTTCG CAAGGGGGCT
NC_013201.1                1402  2.09e-21 CACACCGCCC GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCCATCATGCGATGGTCAAATCTGGGCTTC GCAAGGGGGC
NC_013202.1                1403  2.86e-21 CACACCGCCC GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCCATCATGCGATGGTCGAATCTGGGCTTC GCAAGGGGGC
NC_007426.1                1397  2.00e-20 CACACCGCCC GTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCTGGCTACCAGGTCGAATCTGGGCTCCG CAAGGGGGCT
NC_014507.1                1393  5.35e-20 CACACCGCCC GTCAAACCACCCGAGTGAGGTTTGGATGAGGCTGTGGTTTTTGCCGCAGTCGAATCTAGG TTTTGCAAGG
NC_012028.1                1400  5.35e-20 CACACCGCCC GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCTCGTTACACGAGTCGAATCTGGGCTTCG CAAGGGGGCT
NC_021313.1                1402  7.03e-20 CACACCGCCC GTCAAATCACCCGAGTGGGATCCGGATGAGGCCCGGTTCCCGGGTCGAATCTGGGTTCCG CAAGGGGGAT
NC_009712.1                1391  9.21e-20 CACACCGCCC GTCAAACCACCCGAGTGAGGTCTTGATGAGGTTGTCGTTTTCTGCGGCGATCGAATCTAG GTTTTGCAAG
NC_013926.1                1400  1.20e-19 CACACCGCCC GTCAAACCATCCGAGTTGGCTCTAGGTGAGGCCCTGTTCTATGGGCAGGGTCGAACCTGG GGTCAGCGAG
NC_015416.1                1392  2.03e-19 CACACCGCCC GTCAAACCACCCGAGTAGGGTCTGAATGAGAGCGCTTTCTTTGGAGGCGTTCGAATTTGG GCTTTGCAAG
NC_002607.1                1402  3.40e-19 CACACCGCCC GTCAAATCACCCGAGTGGGGTTCGGATGAGGCCGGCATGCGCTGGTCAAATCTGGGCTCC GCAAGGGGGA
NC_015954.1                1404  8.10e-19 CACACCGCCC GTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCCACCCAGTGGGTCGAATCTGGGCTCCG CAAGGGGGCT
NC_007355.1                1402  1.48e-18 CACACCGCCC GTCAAACCACCCGAGTGAGGTATGGGTGAGGGCACGAACATCGTGTCGTGTTCGAACCTG TGCTTTGCAA
NC_014729.1                1399  2.36e-18 CACACCGCCC GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCTATCGCAAGATAGTCGAATCTGGGCTTC GCAAGGGGGC
NC_007955.1                1400  2.97e-18 CACACCGCCC GTCAAACCACCCGAGTGAGGTATGGGTGAGGGCACGGACTTAGTGCCGTGTTCGAACCTA AATTTCGCAA
NC_002578.1                1397  1.25e-17 CACACCGCCC GTCAAACCATCCGAGCTGGTGTTGGATGAGGGTCCGTCCTCTGGATGGATTCGAATCTGA TGTCAGTGAG
NC_008942.1                1390  4.77e-17 CACACCGCCC GTCAAACCATCCTAGTGGGGTTTGGATGAGTCCCTGGTCTTTGCCGGGGTCGAATCTAGG TTCCGTGAGG
NC_020892.1                1390  3.15e-16 CACACCGCCC GTCAAACCACCCGAGTCGGGTTTCAGTGAGGCTGCCTTTTTTGGGGTTGTCGAACTGAGA TTCAGCAAGG
NC_014253.1                1397  3.15e-16 CACACCGCCC GTCAAACCACCCGAGTGAGGTTTGGGTGAGGGCATGAACCCCAAGGTGTCATGCTCGAAC CTAAATCTCG
NC_007681.1                1409  3.77e-16 CACACCGCCC GTCACACCACCCAAAAAGGGTTTGGATGAGGCCATAATTTTCAAATGTTATTGTCGAATC TAGGTTTTTT
NC_021592.1                1394  1.15e-15 CACACCGCCC GTCAAACCATCCGAGTTGGTGTTGGATGAGGTTTAATTCGAGAGGGTTAAATCAAATCTG ATGTCGGTGA
NC_000909.2                1402  1.15e-15 CACACCGCCC GTCACGCCACCCGAGTTGAGCCCAAGTGAGGCCCTGTCCGCAAGGGCAGGGTCGAACTTG GGTTCAGCGA
NC_013849.1                1435  1.47e-15 CACACCGCCC GTCAAGCCACCCGAGTGGGCCAGGGGCGAGGCCCGCTCCTTAGGGGCGGGTCGAGCCCAG GGTCCGCGAG
NC_009515.2                1401  1.47e-15 CACACCGCCC GTCACGCCACCCAAAAAGGGATTGGATGAGGATGTAATGTTTTGTTATATTCGAATCTAG TTTTTTTAAG
NC_005877.1                1404  5.13e-15 CACACCGCCT GTCAAACCATCCGAGCTGGTGTTGGATGAGGGTTAGCTCGAGAGGGTTAGCTCAAATCTG ATGTCAGTGA
NC_017461.1                1424  2.79e-14 CACACCGCCC GTCGCTCCACCCGAGTGGGGAAAGGGTGAGGCCCTGCTCCGAAAGGGGTAGGGTCGAACC CTTTCCCTGC
NC_015216.1                1406  2.79e-14 CACACCGCCC GTCACGCCACCCAAAAAGGGTTGGGATGAGGCCCTAATCTTTATCGGTTAGGTTCGAATC TTGGTTCTTT
NC_015518.1                1419  4.99e-14 CACACCGCCC GTCGCTCCACCCGAGTGAGGAAGAAGTGAGGCTCCTTGCCCTTCGGGGTGGGGAGTCGAA CTTCTTCCTC
NC_007796.1                1392  4.99e-14 CACACCGCCC GTCAAACCACCCGAGTGAGGTCTTGATGAGGATGTATCAGTGATATGTTCGAATCTGGGT TTTGCAAGGG
NC_014205.1                1423  3.81e-13 CACACCGCCC GTCGCTCCACCCGAGGGAGGGGGGAGTGAGGCCTGGTCTCCCGGGGAAACCCGGGGGGCC AGGTCGAACT
NC_009440.1                1417  5.80e-13 CACACCGCCC GTCGCTCCACCCGAGTGGAGGGGAAGTGAGGCCTCTTGCCCCTCGGGGTGGGAGGTCGAG CTTCTCCTCC
NC_022093.1                1430  1.12e-12 CACACCGCCC GTCGCTCCACCCGAGGGAGGCCCAGGTGAGGCCTCCTGCCGACGAGGTGGGAGGTCGAAT CTGGGCCTCC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 19 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_017527.1                       4.1e-22  1398_[+19]_116
NC_008212.2                       4.8e-22  1402_[+19]_110
NC_013201.1                       2.1e-21  1401_[+19]_110
NC_013202.1                       2.9e-21  1402_[+19]_110
NC_007426.1                         2e-20  1396_[+19]_109
NC_014507.1                       5.3e-20  1392_[+19]_115
NC_012028.1                       5.3e-20  1399_[+19]_110
NC_021313.1                         7e-20  1401_[+19]_109
NC_009712.1                       9.2e-20  1390_[+19]_115
NC_013926.1                       1.2e-19  1399_[+19]_113
NC_015416.1                         2e-19  1391_[+19]_116
NC_002607.1                       3.4e-19  1401_[+19]_111
NC_015954.1                       8.1e-19  1403_[+19]_109
NC_007355.1                       1.5e-18  1401_[+19]_116
NC_014729.1                       2.4e-18  1398_[+19]_120
NC_007955.1                         3e-18  1399_[+19]_116
NC_002578.1                       1.2e-17  1396_[+19]_114
NC_008942.1                       4.8e-17  1389_[+19]_115
NC_020892.1                       3.2e-16  1389_[+19]_115
NC_014253.1                       3.2e-16  1396_[+19]_120
NC_007681.1                       3.8e-16  1408_[+19]_121
NC_021592.1                       1.1e-15  1393_[+19]_117
NC_000909.2                       1.1e-15  1401_[+19]_116
NC_013849.1                       1.5e-15  1434_[+19]_116
NC_009515.2                       1.5e-15  1400_[+19]_115
NC_005877.1                       5.1e-15  1403_[+19]_105
NC_017461.1                       2.8e-14  1423_[+19]_118
NC_015216.1                       2.8e-14  1405_[+19]_119
NC_015518.1                         5e-14  1418_[+19]_120
NC_007796.1                         5e-14  1391_[+19]_114
NC_014205.1                       3.8e-13  1422_[+19]_128
NC_009440.1                       5.8e-13  1416_[+19]_130
NC_022093.1                       1.1e-12  1429_[+19]_123
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 19 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 19 width=60 seqs=33
NC_017527.1              ( 1399) GTCAAACCACCCGAGTAGGGTCTGGATGAGGGTGTGTTTCCTTGACACATTCGAATCTGG  1 
NC_008212.2              ( 1403) GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCTATCATTGATAGTCGAATCTGGGCTTCG  1 
NC_013201.1              ( 1402) GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCCATCATGCGATGGTCAAATCTGGGCTTC  1 
NC_013202.1              ( 1403) GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCCATCATGCGATGGTCGAATCTGGGCTTC  1 
NC_007426.1              ( 1397) GTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCTGGCTACCAGGTCGAATCTGGGCTCCG  1 
NC_014507.1              ( 1393) GTCAAACCACCCGAGTGAGGTTTGGATGAGGCTGTGGTTTTTGCCGCAGTCGAATCTAGG  1 
NC_012028.1              ( 1400) GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCTCGTTACACGAGTCGAATCTGGGCTTCG  1 
NC_021313.1              ( 1402) GTCAAATCACCCGAGTGGGATCCGGATGAGGCCCGGTTCCCGGGTCGAATCTGGGTTCCG  1 
NC_009712.1              ( 1391) GTCAAACCACCCGAGTGAGGTCTTGATGAGGTTGTCGTTTTCTGCGGCGATCGAATCTAG  1 
NC_013926.1              ( 1400) GTCAAACCATCCGAGTTGGCTCTAGGTGAGGCCCTGTTCTATGGGCAGGGTCGAACCTGG  1 
NC_015416.1              ( 1392) GTCAAACCACCCGAGTAGGGTCTGAATGAGAGCGCTTTCTTTGGAGGCGTTCGAATTTGG  1 
NC_002607.1              ( 1402) GTCAAATCACCCGAGTGGGGTTCGGATGAGGCCGGCATGCGCTGGTCAAATCTGGGCTCC  1 
NC_015954.1              ( 1404) GTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCCACCCAGTGGGTCGAATCTGGGCTCCG  1 
NC_007355.1              ( 1402) GTCAAACCACCCGAGTGAGGTATGGGTGAGGGCACGAACATCGTGTCGTGTTCGAACCTG  1 
NC_014729.1              ( 1399) GTCAAAGCACCCGAGTGAGGTCCGGATGAGGCTATCGCAAGATAGTCGAATCTGGGCTTC  1 
NC_007955.1              ( 1400) GTCAAACCACCCGAGTGAGGTATGGGTGAGGGCACGGACTTAGTGCCGTGTTCGAACCTA  1 
NC_002578.1              ( 1397) GTCAAACCATCCGAGCTGGTGTTGGATGAGGGTCCGTCCTCTGGATGGATTCGAATCTGA  1 
NC_008942.1              ( 1390) GTCAAACCATCCTAGTGGGGTTTGGATGAGTCCCTGGTCTTTGCCGGGGTCGAATCTAGG  1 
NC_020892.1              ( 1390) GTCAAACCACCCGAGTCGGGTTTCAGTGAGGCTGCCTTTTTTGGGGTTGTCGAACTGAGA  1 
NC_014253.1              ( 1397) GTCAAACCACCCGAGTGAGGTTTGGGTGAGGGCATGAACCCCAAGGTGTCATGCTCGAAC  1 
NC_007681.1              ( 1409) GTCACACCACCCAAAAAGGGTTTGGATGAGGCCATAATTTTCAAATGTTATTGTCGAATC  1 
NC_021592.1              ( 1394) GTCAAACCATCCGAGTTGGTGTTGGATGAGGTTTAATTCGAGAGGGTTAAATCAAATCTG  1 
NC_000909.2              ( 1402) GTCACGCCACCCGAGTTGAGCCCAAGTGAGGCCCTGTCCGCAAGGGCAGGGTCGAACTTG  1 
NC_013849.1              ( 1435) GTCAAGCCACCCGAGTGGGCCAGGGGCGAGGCCCGCTCCTTAGGGGCGGGTCGAGCCCAG  1 
NC_009515.2              ( 1401) GTCACGCCACCCAAAAAGGGATTGGATGAGGATGTAATGTTTTGTTATATTCGAATCTAG  1 
NC_005877.1              ( 1404) GTCAAACCATCCGAGCTGGTGTTGGATGAGGGTTAGCTCGAGAGGGTTAGCTCAAATCTG  1 
NC_017461.1              ( 1424) GTCGCTCCACCCGAGTGGGGAAAGGGTGAGGCCCTGCTCCGAAAGGGGTAGGGTCGAACC  1 
NC_015216.1              ( 1406) GTCACGCCACCCAAAAAGGGTTGGGATGAGGCCCTAATCTTTATCGGTTAGGTTCGAATC  1 
NC_015518.1              ( 1419) GTCGCTCCACCCGAGTGAGGAAGAAGTGAGGCTCCTTGCCCTTCGGGGTGGGGAGTCGAA  1 
NC_007796.1              ( 1392) GTCAAACCACCCGAGTGAGGTCTTGATGAGGATGTATCAGTGATATGTTCGAATCTGGGT  1 
NC_014205.1              ( 1423) GTCGCTCCACCCGAGGGAGGGGGGAGTGAGGCCTGGTCTCCCGGGGAAACCCGGGGGGCC  1 
NC_009440.1              ( 1417) GTCGCTCCACCCGAGTGGAGGGGAAGTGAGGCCTCTTGCCCCTCGGGGTGGGAGGTCGAG  1 
NC_022093.1              ( 1430) GTCGCTCCACCCGAGGGAGGCCCAGGTGAGGCCTCCTGCCGACGAGGTGGGAGGTCGAAT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 19 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 12.3203 E= 3.5e-267 
 -1169  -1169    165  -1169 
 -1169  -1169  -1169    238 
 -1169    198  -1169  -1169 
   185  -1169   -107  -1169 
   162     10  -1169  -1169 
   162  -1169   -139    -34 
 -1169    152    -58   -166 
 -1169    198  -1169  -1169 
   208  -1169  -1169  -1169 
 -1169    174  -1169    -34 
 -1169    198  -1169  -1169 
 -1169    198  -1169  -1169 
  -138  -1169    147   -266 
   208  -1169  -1169  -1169 
  -138  -1169    151  -1169 
  -138   -207   -239    204 
   -64   -306    107    -34 
    85  -1169     86  -1169 
  -196  -1169    156  -1169 
  -296   -207    136   -108 
  -138   -148   -107    180 
   -64     84   -239     80 
  -296     39   -107    134 
   -64   -306    125   -166 
   -38  -1169    136  -1169 
   143  -1169     19  -1169 
 -1169   -306  -1169    234 
 -1169  -1169    165  -1169 
   208  -1169  -1169  -1169 
 -1169  -1169    165  -1169 
  -296  -1169    156   -266 
  -196    139    -58   -166 
 -1169    125  -1169    104 
     4     39    -39     -8 
  -138     -7    -81    134 
   -64     25     42    -66 
    21   -107   -107    124 
   -96    -26   -181    158 
   -96    110   -139     14 
  -138     52    -81     92 
   -96     25    -81    104 
    21    -26    -81     80 
    36   -306     31     51 
   -96   -107    100    -66 
   -38   -107     70     -8 
 -1169     -7     61     51 
   -96     10     61    -66 
    36   -148     19     34 
    95  -1169    -22     51 
    21   -148    -22     92 
  -196     25    -58    114 
  -196     52    -58     92 
   -64    -75     78    -34 
    74   -306     52    -66 
    50    -75     31    -66 
   -64     25    -39     66 
  -138     84   -107     66 
     4     -7   -139    104 
   -15     -7    -39     66 
   -96     10     78   -166 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 19 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 3.5e-267 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.848485  0.000000  0.151515  0.000000 
 0.727273  0.272727  0.000000  0.000000 
 0.727273  0.000000  0.121212  0.151515 
 0.000000  0.727273  0.212121  0.060606 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.848485  0.000000  0.151515 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.090909  0.000000  0.878788  0.030303 
 1.000000  0.000000  0.000000  0.000000 
 0.090909  0.000000  0.909091  0.000000 
 0.090909  0.060606  0.060606  0.787879 
 0.151515  0.030303  0.666667  0.151515 
 0.424242  0.000000  0.575758  0.000000 
 0.060606  0.000000  0.939394  0.000000 
 0.030303  0.060606  0.818182  0.090909 
 0.090909  0.090909  0.151515  0.666667 
 0.151515  0.454545  0.060606  0.333333 
 0.030303  0.333333  0.151515  0.484848 
 0.151515  0.030303  0.757576  0.060606 
 0.181818  0.000000  0.818182  0.000000 
 0.636364  0.000000  0.363636  0.000000 
 0.000000  0.030303  0.000000  0.969697 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.030303  0.000000  0.939394  0.030303 
 0.060606  0.666667  0.212121  0.060606 
 0.000000  0.606061  0.000000  0.393939 
 0.242424  0.333333  0.242424  0.181818 
 0.090909  0.242424  0.181818  0.484848 
 0.151515  0.303030  0.424242  0.121212 
 0.272727  0.121212  0.151515  0.454545 
 0.121212  0.212121  0.090909  0.575758 
 0.121212  0.545455  0.121212  0.212121 
 0.090909  0.363636  0.181818  0.363636 
 0.121212  0.303030  0.181818  0.393939 
 0.272727  0.212121  0.181818  0.333333 
 0.303030  0.030303  0.393939  0.272727 
 0.121212  0.121212  0.636364  0.121212 
 0.181818  0.121212  0.515152  0.181818 
 0.000000  0.242424  0.484848  0.272727 
 0.121212  0.272727  0.484848  0.121212 
 0.303030  0.090909  0.363636  0.242424 
 0.454545  0.000000  0.272727  0.272727 
 0.272727  0.090909  0.272727  0.363636 
 0.060606  0.303030  0.212121  0.424242 
 0.060606  0.363636  0.212121  0.363636 
 0.151515  0.151515  0.545455  0.151515 
 0.393939  0.030303  0.454545  0.121212 
 0.333333  0.151515  0.393939  0.121212 
 0.151515  0.303030  0.242424  0.303030 
 0.090909  0.454545  0.151515  0.303030 
 0.242424  0.242424  0.121212  0.393939 
 0.212121  0.242424  0.242424  0.303030 
 0.121212  0.272727  0.545455  0.060606 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 19 regular expression
--------------------------------------------------------------------------------
GTCA[AC]A[CG]CACCCGAGTG[GA]GGT[CT][TC]GG[AG]TGAGG[CG][CT][CAG][TC][GC][TA][TC][CT][CT][TC][TAC][GAT]GG[GTC][GC][GAT][AGT][TAG][TCG][CTG]G[GA][GA][CTG][CT][TAC][TCGA][GC]
--------------------------------------------------------------------------------




Time 325.91 secs.

********************************************************************************


********************************************************************************
MOTIF 20 MEME	width =  60  sites =  33  llr = 921  E-value = 7.5e-173
********************************************************************************
--------------------------------------------------------------------------------
	Motif 20 Description
--------------------------------------------------------------------------------
Simplified        A  :4:::19:92:125233522::::a9::112133121129aa21:11111::::253243
pos.-specific     C  :39654:1:23441213213a:::::1:32331133542:::22246524455632:111
probability       G  :111451:155331243223::99:129421231342141::5631:3555431223652
matrix            T  92:311:9:12213431251:a1:::8125453522342:::2254312111232131:3

         bits    2.4                      *                                      
                 2.1        *             *  *               *                   
                 1.9 *      *            **  *               **                  
                 1.7 * *   ***           **  **             ***                  
Relative         1.4 * *   ***           **  **             ***                  
Entropy          1.2 * *   ***           *******            ***                  
(40.3 bits)      1.0 * *   ***           ********           ***                  
                 0.7 * **  ***           ********           ***    *      *      
                 0.5 * *** ***    *    * ******** *   *   * ***  ***    ***    * 
                 0.2 *********** **** ** ******** *** *  ** *************** *****
                 0.0 ------------------------------------------------------------

Multilevel           TACCCGATAGGCCATGAATGCTGGAATGGTTTGTCGCCGAAAGGTCCCGGGCCCCAAGGA
consensus             C TGC    CGGTCAGGAC        CCCCTAGCTTT     GTTGTCCGGTGGGAAT
sequence              T          A  TC GA        T   A T         C         T T  G
                                                                           A     
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 20 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                                        Site                          
-------------             ----- ---------            ------------------------------------------------------------
NC_017527.1                 198  2.48e-21 CTGGGGATAA TTCCGGATAGGCCACAGATGCTGGAATGCGCTGTGGCCGAAAGCTCCGGCGCCCAAGGAT GGGTCTGCGG
NC_009712.1                 195  3.05e-21 CTGGGGATAA TACCCCATAGGCTATGGATGCTGGAATGCTCTGTAGTTGAAAGGTCCGCCGCTTCAGGAT GGGTCTGCGG
NC_020892.1                 193  1.16e-19 CTGAGGATAA TTCTCCATAGGCCATAGAATCTGGAATGATTTATGGCTCAAAGTTCCGGCGCTGTAGGAT CGGTCTGCGG
NC_013926.1                 199  2.34e-19 CTGAGGCTAA TACCCCATAGGGGAAAGGTACTGGAAGGTCCTTTCCCTGAAAGCTCCGGCGCCCGAGGAT GGGTCTGCGG
NC_014507.1                 197  7.58e-19 CTGGGGATAA TACTCCATAGGCTAGGGATACTGGAATGTTTCCTAGCCAAAAGTTCCGGCGCCTTAGGAT GGATCTGCGG
NC_009515.2                 197  1.23e-18 CTGGGGATAA TACTGGATAGGCAATTATTCCTGTAATGGTTTTTTGTTTAAATGTTTTTTCGCCTAAGGA TGGGTCTGCG
NC_008942.1                 194  2.33e-18 CTGGGGCTAA TGCTCCATAGTGGATATGTCCTGGAATGGTATATCCTCGAAAGATCCGTCGCCTTAGGAT GGGACTGCGT
NC_015416.1                 192  2.72e-18 CTGGGTATAA TACCCGATAGGTCTCGATTGCTGGAATGCATCGAGATTTAAAGCTCCGGCGCCTAAGGAT GGGTCTGCGG
NC_007955.1                 199  1.53e-15 CTGGAGATAA TTCCGAATAGGTCAAATATGCTGGAATGCTTTTTGATCAAAAGACTTCGGTTGCCTAAGG ATGGATCTGC
NC_007796.1                 196  4.80e-15 CTGGGGGTAA TACTCCATAGTTCGTGCTGACTGGAATGTTATGCGAACGAAAGATCCGTCGCTTCAGGAT GAGTCTGCGG
NC_014253.1                 196  5.98e-15 CTGGGGATAA TACCGGATGAGCCACAGATGCTGGAAGGCTCTGTGGTTAAAAGGGGACACCGCCCAAGGA TGGATCTGCG
NC_002607.1                 197  6.68e-15 CTGAGGCTAA TCCCCGATAACGCTTTGCTCCTGGAAGGGGCAAAGCCGGAAACGCTCCGGCGCCACAGGA TGCGGCTGCG
NC_013849.1                 213  3.25e-14 CTGGGGCTAA ACCCCCATAGGGGATAGGTGCTGGAATGCCCTATCCCCGAAAGTGCACGGTTGCCGTAAG GCGCCGTGCA
NC_015216.1                 203  5.37e-14 CTGGGGACAA TACCAGATATGTAGAGATTCCTGCAATGGTCCTCTATTTAAATGTTCCGACGCCTAAGGA TGGATCTGCG
NC_005877.1                 207  7.22e-14 CTGAGGCTAA TTCCCTATAGCCATTCAGAACTGGAATGTTTGGATGGTGAAGGCTCCGGCGCCCGGGGAT GAGTCTGCGG
NC_022093.1                 214  8.76e-14 CTGGGGATAA TCCCCCATAGGTGTAGACTTCTGGAATGGGTCTACGCCGAAAGGGCTACGGCACCATCCC TGCCGTAGCC
NC_002578.1                 198  9.65e-14 CTGAGGCTAA TTCCCCATAGTCATTACAAACTGGAATGGTTGTAATGATGAAAGCTTCTGCACCTGAGGA TAAGTCTGCG
NC_000909.2                 203  1.06e-13 CTGAGGCTAA TCCCCCATAGGGGAGGAGGTCTGGAATGATCCCTCCCCGAAAGGCGTAAGCCGCCCGAGG ATGGGGCTGC
NC_021592.1                 198  1.29e-13 CTGAAGGTAA TACCTTATAATTGCTTAAAACTGGAATGTTTTTGCAATAAAAGTTACGACGCTCAAGGAT GAGTCTGCGA
NC_014205.1                 204  1.29e-13 CTGGTGCTAA TCCCCCATAGGGGAGGACGCCTGGAAGGGTTCCTCCCCGAAAGGGTGCGGCGGGGGTTAT CGCCGCCGCG
NC_007355.1                 199  3.25e-13 CTGGGGATAA TACCGGATAACGCACATATGCTGGAATGCTTTATGCGTAAAATGGATTCGTCTGCCCAAG GATGGGTCTG
NC_012028.1                 197  5.56e-13 CTGAGGTTAA TAGTGCATACCACAATCCACCTGGAATGAGGATTGTGCCAAATGCTCCGGCGCCGAAGGA TGTGGCTGCG
NC_007681.1                 207  6.07e-13 CTGAAGATAA TACTGGATATTAGGTTATGCCTGGAATGGTTTACCTTTGAAATGTATTTTTCGCCTAAGG ATAGATCTGC
NC_007426.1                 192  1.21e-12 CTGAGGCTAA TTCCGGATACCACATTCATCCTGGAATTGGAGAATGTGCGAAATGCTCCGGCGCCATAGG ATGTGGCTGC
NC_013202.1                 198  1.32e-12 CTGAGGCTAA TCCCCGATACAGCTCTCAGACTGGAGTGTCGAGAGCTGGAAACGCTCCGGCGCCATAGGA TGTGGCTGCG
NC_021313.1                 198  1.43e-12 CTGAGGCTAA TTCTGGATAACACCCACATCCTGGAGTGGAGTGGGTGTGAAACGTTCCGGCGCCACAGGA TGTGGCTGCG
NC_014729.1                 195  2.76e-12 CTGAGGCTAA TCCGCGATACCGATCCCACGCTGGAATGCCGGGATCCACAAACGCTCCGGCGCTGCAGGA TGCGGCTGCG
NC_017461.1                 204  7.54e-11 CTGGAGCTAA TACCCAATAAGCGGGGAGGCCTGGAACGGTTCTCCGCCTAAATGGATGGAAGGGGGTTAA CGCCTTCTAT
NC_015518.1                 203  1.87e-10 CTGGAGCTAA TCCGGGGCAGGCGAAGGGTACTGGAACGTCCCTTCGCCTAAAGGGGCATGGGCTATTTCC TGCTCATGCT
NC_009440.1                 203  2.88e-10 CTGGGGCTAA TCCGGAGCGGGCAAGGGAATCTGGAATGATCTCTTGCCTAAAAGCCTCTCGGCTGATCCC GTCGAGAGGC
NC_013201.1                 198  5.25e-10 CTGAGGCTAA TCGTGGATATCGCATTCACGCTTGAACTGCCGAATGCGAGAAACGTTCCGGCGCTATAGG ATGTGGCTGC
NC_015954.1                 198  7.03e-10 CTGAGGCTAA TGCCTGATACGCGTTGTCAGTTTGAAGACGACGACGATCAAACGTTCCGACGCTGGTGGA TGTGGCTGCG
NC_008212.2                 198  4.41e-09 CTGAGGTTAA CCCGTCATACCGATCTCAGGCTTGAATCGCAGAGATCACAAAACGCCCCGGCGCTGTAGG ATGTGGCTGC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 20 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_017527.1                       2.5e-21  197_[+20]_1317
NC_009712.1                         3e-21  194_[+20]_1311
NC_020892.1                       1.2e-19  192_[+20]_1312
NC_013926.1                       2.3e-19  198_[+20]_1314
NC_014507.1                       7.6e-19  196_[+20]_1311
NC_009515.2                       1.2e-18  196_[+20]_1319
NC_008942.1                       2.3e-18  193_[+20]_1311
NC_015416.1                       2.7e-18  191_[+20]_1316
NC_007955.1                       1.5e-15  198_[+20]_1317
NC_007796.1                       4.8e-15  195_[+20]_1310
NC_014253.1                         6e-15  195_[+20]_1321
NC_002607.1                       6.7e-15  196_[+20]_1316
NC_013849.1                       3.3e-14  212_[+20]_1338
NC_015216.1                       5.4e-14  202_[+20]_1322
NC_005877.1                       7.2e-14  206_[+20]_1302
NC_022093.1                       8.8e-14  213_[+20]_1339
NC_002578.1                       9.7e-14  197_[+20]_1313
NC_000909.2                       1.1e-13  202_[+20]_1315
NC_021592.1                       1.3e-13  197_[+20]_1313
NC_014205.1                       1.3e-13  203_[+20]_1347
NC_007355.1                       3.3e-13  198_[+20]_1319
NC_012028.1                       5.6e-13  196_[+20]_1313
NC_007681.1                       6.1e-13  206_[+20]_1323
NC_007426.1                       1.2e-12  191_[+20]_1314
NC_013202.1                       1.3e-12  197_[+20]_1315
NC_021313.1                       1.4e-12  197_[+20]_1313
NC_014729.1                       2.8e-12  194_[+20]_1324
NC_017461.1                       7.5e-11  203_[+20]_1338
NC_015518.1                       1.9e-10  202_[+20]_1336
NC_009440.1                       2.9e-10  202_[+20]_1344
NC_013201.1                       5.3e-10  197_[+20]_1314
NC_015954.1                         7e-10  197_[+20]_1315
NC_008212.2                       4.4e-09  197_[+20]_1315
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 20 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 20 width=60 seqs=33
NC_017527.1              (  198) TTCCGGATAGGCCACAGATGCTGGAATGCGCTGTGGCCGAAAGCTCCGGCGCCCAAGGAT  1 
NC_009712.1              (  195) TACCCCATAGGCTATGGATGCTGGAATGCTCTGTAGTTGAAAGGTCCGCCGCTTCAGGAT  1 
NC_020892.1              (  193) TTCTCCATAGGCCATAGAATCTGGAATGATTTATGGCTCAAAGTTCCGGCGCTGTAGGAT  1 
NC_013926.1              (  199) TACCCCATAGGGGAAAGGTACTGGAAGGTCCTTTCCCTGAAAGCTCCGGCGCCCGAGGAT  1 
NC_014507.1              (  197) TACTCCATAGGCTAGGGATACTGGAATGTTTCCTAGCCAAAAGTTCCGGCGCCTTAGGAT  1 
NC_009515.2              (  197) TACTGGATAGGCAATTATTCCTGTAATGGTTTTTTGTTTAAATGTTTTTTCGCCTAAGGA  1 
NC_008942.1              (  194) TGCTCCATAGTGGATATGTCCTGGAATGGTATATCCTCGAAAGATCCGTCGCCTTAGGAT  1 
NC_015416.1              (  192) TACCCGATAGGTCTCGATTGCTGGAATGCATCGAGATTTAAAGCTCCGGCGCCTAAGGAT  1 
NC_007955.1              (  199) TTCCGAATAGGTCAAATATGCTGGAATGCTTTTTGATCAAAAGACTTCGGTTGCCTAAGG  1 
NC_007796.1              (  196) TACTCCATAGTTCGTGCTGACTGGAATGTTATGCGAACGAAAGATCCGTCGCTTCAGGAT  1 
NC_014253.1              (  196) TACCGGATGAGCCACAGATGCTGGAAGGCTCTGTGGTTAAAAGGGGACACCGCCCAAGGA  1 
NC_002607.1              (  197) TCCCCGATAACGCTTTGCTCCTGGAAGGGGCAAAGCCGGAAACGCTCCGGCGCCACAGGA  1 
NC_013849.1              (  213) ACCCCCATAGGGGATAGGTGCTGGAATGCCCTATCCCCGAAAGTGCACGGTTGCCGTAAG  1 
NC_015216.1              (  203) TACCAGATATGTAGAGATTCCTGCAATGGTCCTCTATTTAAATGTTCCGACGCCTAAGGA  1 
NC_005877.1              (  207) TTCCCTATAGCCATTCAGAACTGGAATGTTTGGATGGTGAAGGCTCCGGCGCCCGGGGAT  1 
NC_022093.1              (  214) TCCCCCATAGGTGTAGACTTCTGGAATGGGTCTACGCCGAAAGGGCTACGGCACCATCCC  1 
NC_002578.1              (  198) TTCCCCATAGTCATTACAAACTGGAATGGTTGTAATGATGAAAGCTTCTGCACCTGAGGA  1 
NC_000909.2              (  203) TCCCCCATAGGGGAGGAGGTCTGGAATGATCCCTCCCCGAAAGGCGTAAGCCGCCCGAGG  1 
NC_021592.1              (  198) TACCTTATAATTGCTTAAAACTGGAATGTTTTTGCAATAAAAGTTACGACGCTCAAGGAT  1 
NC_014205.1              (  204) TCCCCCATAGGGGAGGACGCCTGGAAGGGTTCCTCCCCGAAAGGGTGCGGCGGGGGTTAT  1 
NC_007355.1              (  199) TACCGGATAACGCACATATGCTGGAATGCTTTATGCGTAAAATGGATTCGTCTGCCCAAG  1 
NC_012028.1              (  197) TAGTGCATACCACAATCCACCTGGAATGAGGATTGTGCCAAATGCTCCGGCGCCGAAGGA  1 
NC_007681.1              (  207) TACTGGATATTAGGTTATGCCTGGAATGGTTTACCTTTGAAATGTATTTTTCGCCTAAGG  1 
NC_007426.1              (  192) TTCCGGATACCACATTCATCCTGGAATTGGAGAATGTGCGAAATGCTCCGGCGCCATAGG  1 
NC_013202.1              (  198) TCCCCGATACAGCTCTCAGACTGGAGTGTCGAGAGCTGGAAACGCTCCGGCGCCATAGGA  1 
NC_021313.1              (  198) TTCTGGATAACACCCACATCCTGGAGTGGAGTGGGTGTGAAACGTTCCGGCGCCACAGGA  1 
NC_014729.1              (  195) TCCGCGATACCGATCCCACGCTGGAATGCCGGGATCCACAAACGCTCCGGCGCTGCAGGA  1 
NC_017461.1              (  204) TACCCAATAAGCGGGGAGGCCTGGAACGGTTCTCCGCCTAAATGGATGGAAGGGGGTTAA  1 
NC_015518.1              (  203) TCCGGGGCAGGCGAAGGGTACTGGAACGTCCCTTCGCCTAAAGGGGCATGGGCTATTTCC  1 
NC_009440.1              (  203) TCCGGAGCGGGCAAGGGAATCTGGAATGATCTCTTGCCTAAAAGCCTCTCGGCTGATCCC  1 
NC_013201.1              (  198) TCGTGGATATCGCATTCACGCTTGAACTGCCGAATGCGAGAAACGTTCCGGCGCTATAGG  1 
NC_015954.1              (  198) TGCCTGATACGCGTTGTCAGTTTGAAGACGACGACGATCAAACGTTCCGACGCTGGTGGA  1 
NC_008212.2              (  198) CCCGTCATACCGATCTCAGGCTTGAATCGCAGAGATCACAAAACGCCCCGGCGCTGTAGG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 20 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 60 n= 50130 bayes= 12.3203 E= 7.5e-173 
  -296   -306  -1169    229 
    74     39   -239     14 
 -1169    189   -239  -1169 
 -1169    125   -139     51 
  -296    102     19   -108 
  -138     63     52   -166 
   199  -1169   -239  -1169 
 -1169   -207  -1169    229 
   199  -1169   -239  -1169 
   -38    -48     78   -108 
  -296     10     78    -34 
   -96     52      7     -8 
   -15     63      7   -166 
   121   -207   -139     51 
   -38     -7   -107    114 
    36   -207     19     51 
    36     10     -7    -66 
   104    -75    -58    -34 
   -15   -207    -58    142 
     4     25      7    -66 
 -1169    193  -1169   -266 
 -1169  -1169  -1169    238 
 -1169  -1169    151   -108 
 -1169   -306    156   -266 
   208  -1169  -1169  -1169 
   199  -1169   -239  -1169 
 -1169   -148   -107    198 
  -296   -306    147   -166 
   -96     10     31     14 
  -196    -26    -81    151 
   -64     39   -139    104 
  -138     10    -81    124 
    21   -107     -7     66 
    36   -107   -181    134 
   -96     39      7     14 
   -64     10     42    -34 
  -138     84   -107     66 
  -138     63   -139    104 
   -38    -48     42     14 
   195  -1169   -181  -1169 
   208  -1169  -1169  -1169 
   204  -1169   -339  -1169 
   -64    -75     70     -8 
  -138    -48     86    -34 
 -1169     -7     -7    124 
   -96     74   -181     92 
  -196    118   -339     80 
  -138     93      7   -108 
  -138    -48     70     14 
  -138     52     61   -166 
  -296     52     61    -66 
  -296    102     31   -166 
  -296    110    -22    -34 
 -1169    125   -139     51 
   -15     25    -39     34 
   113    -75    -58    -66 
    50   -306      7     66 
     4   -207     93   -108 
    85   -148     61  -1169 
    50   -148    -39     80 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 20 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 60 nsites= 33 E= 7.5e-173 
 0.030303  0.030303  0.000000  0.939394 
 0.393939  0.333333  0.060606  0.212121 
 0.000000  0.939394  0.060606  0.000000 
 0.000000  0.606061  0.121212  0.272727 
 0.030303  0.515152  0.363636  0.090909 
 0.090909  0.393939  0.454545  0.060606 
 0.939394  0.000000  0.060606  0.000000 
 0.000000  0.060606  0.000000  0.939394 
 0.939394  0.000000  0.060606  0.000000 
 0.181818  0.181818  0.545455  0.090909 
 0.030303  0.272727  0.545455  0.151515 
 0.121212  0.363636  0.333333  0.181818 
 0.212121  0.393939  0.333333  0.060606 
 0.545455  0.060606  0.121212  0.272727 
 0.181818  0.242424  0.151515  0.424242 
 0.303030  0.060606  0.363636  0.272727 
 0.303030  0.272727  0.303030  0.121212 
 0.484848  0.151515  0.212121  0.151515 
 0.212121  0.060606  0.212121  0.515152 
 0.242424  0.303030  0.333333  0.121212 
 0.000000  0.969697  0.000000  0.030303 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.909091  0.090909 
 0.000000  0.030303  0.939394  0.030303 
 1.000000  0.000000  0.000000  0.000000 
 0.939394  0.000000  0.060606  0.000000 
 0.000000  0.090909  0.151515  0.757576 
 0.030303  0.030303  0.878788  0.060606 
 0.121212  0.272727  0.393939  0.212121 
 0.060606  0.212121  0.181818  0.545455 
 0.151515  0.333333  0.121212  0.393939 
 0.090909  0.272727  0.181818  0.454545 
 0.272727  0.121212  0.303030  0.303030 
 0.303030  0.121212  0.090909  0.484848 
 0.121212  0.333333  0.333333  0.212121 
 0.151515  0.272727  0.424242  0.151515 
 0.090909  0.454545  0.151515  0.303030 
 0.090909  0.393939  0.121212  0.393939 
 0.181818  0.181818  0.424242  0.212121 
 0.909091  0.000000  0.090909  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.969697  0.000000  0.030303  0.000000 
 0.151515  0.151515  0.515152  0.181818 
 0.090909  0.181818  0.575758  0.151515 
 0.000000  0.242424  0.303030  0.454545 
 0.121212  0.424242  0.090909  0.363636 
 0.060606  0.575758  0.030303  0.333333 
 0.090909  0.484848  0.333333  0.090909 
 0.090909  0.181818  0.515152  0.212121 
 0.090909  0.363636  0.484848  0.060606 
 0.030303  0.363636  0.484848  0.121212 
 0.030303  0.515152  0.393939  0.060606 
 0.030303  0.545455  0.272727  0.151515 
 0.000000  0.606061  0.121212  0.272727 
 0.212121  0.303030  0.242424  0.242424 
 0.515152  0.151515  0.212121  0.121212 
 0.333333  0.030303  0.333333  0.303030 
 0.242424  0.060606  0.606061  0.090909 
 0.424242  0.090909  0.484848  0.000000 
 0.333333  0.090909  0.242424  0.333333 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 20 regular expression
--------------------------------------------------------------------------------
T[ACT]C[CT][CG][GC]ATAG[GC][CG][CGA][AT][TC][GAT][AGC][AG][TAG][GCA]CTGGAATG[GCT][TC][TC][TC][GTA][TA][CGT][GC][CT][CT][GT]AAAGG[TGC][CT][CT][CG][GT][GC][GC][CG][CG][CT][CGTA][AG][AGT][GA][GA][ATG]
--------------------------------------------------------------------------------




Time 337.67 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
NC_000909.2                      0.00e+00  48_[+9(6.75e-36)]_34_\
    [+10(2.17e-33)]_[+20(1.06e-13)]_6_[+13(8.59e-29)]_12_[+6(2.04e-32)]_\
    [+18(1.38e-20)]_46_[+8(1.38e-30)]_[+16(2.75e-24)]_38_[+11(2.67e-25)]_24_\
    [+5(8.04e-33)]_31_[+14(1.06e-27)]_1_[+1(5.16e-36)]_[+15(8.79e-26)]_21_\
    [+4(3.95e-35)]_25_[+17(2.06e-21)]_1_[+7(2.26e-30)]_29_[+12(1.37e-29)]_5_\
    [+3(2.30e-31)]_[+19(1.15e-15)]_7_[+2(1.83e-33)]_49
NC_002578.1                      0.00e+00  49_[+9(4.76e-29)]_28_\
    [+10(2.26e-29)]_[+20(9.65e-14)]_5_[+13(1.53e-28)]_12_[+6(2.32e-32)]_\
    [+18(2.03e-19)]_48_[+8(2.62e-31)]_[+16(2.66e-20)]_38_[+11(4.20e-28)]_24_\
    [+5(9.49e-34)]_31_[+14(9.00e-24)]_1_[+1(4.86e-34)]_[+15(8.29e-24)]_21_\
    [+4(3.41e-29)]_25_[+17(3.82e-21)]_1_[+7(1.57e-30)]_28_[+12(4.24e-26)]_5_\
    [+3(3.22e-30)]_[+19(1.25e-17)]_6_[+2(1.93e-32)]_48
NC_002607.1                      0.00e+00  48_[+9(5.09e-33)]_28_\
    [+10(7.30e-29)]_[+20(6.68e-15)]_5_[+13(2.54e-29)]_12_[+6(4.09e-33)]_\
    [+18(2.61e-22)]_48_[+8(2.08e-31)]_[+16(8.71e-25)]_39_[+11(1.39e-30)]_24_\
    [+5(2.43e-35)]_31_[+14(2.84e-28)]_1_[+1(2.07e-35)]_[+15(6.11e-23)]_23_\
    [+4(2.94e-35)]_27_[+17(2.25e-26)]_1_[+7(2.34e-31)]_29_[+12(1.80e-34)]_5_\
    [+3(3.06e-35)]_[+19(3.40e-19)]_1_[+2(8.09e-35)]_50
NC_005877.1                      0.00e+00  58_[+9(2.02e-30)]_28_\
    [+10(2.70e-29)]_[+20(7.22e-14)]_4_[+13(1.33e-29)]_12_[+6(2.92e-32)]_\
    [+18(2.15e-17)]_47_[+8(1.03e-30)]_[+16(1.65e-20)]_38_[+11(2.12e-28)]_24_\
    [+5(3.47e-33)]_31_[+14(2.33e-23)]_1_[+1(7.41e-33)]_[+15(6.62e-23)]_21_\
    [+4(8.90e-30)]_25_[+17(3.73e-20)]_1_[+7(1.18e-28)]_28_[+12(1.74e-28)]_5_\
    [+3(2.83e-31)]_[+19(5.13e-15)]_7_[+2(5.24e-31)]_38
NC_007355.1                      0.00e+00  49_[+9(1.66e-30)]_29_\
    [+10(1.23e-31)]_[+20(3.25e-13)]_7_[+13(2.14e-27)]_12_[+6(5.49e-34)]_\
    [+18(1.79e-22)]_47_[+8(2.61e-30)]_[+16(1.88e-22)]_39_[+11(3.81e-30)]_24_\
    [+5(3.47e-33)]_31_[+14(8.02e-28)]_1_[+1(1.31e-34)]_[+15(4.99e-27)]_21_\
    [+4(5.22e-34)]_26_[+17(1.36e-26)]_1_[+7(4.45e-32)]_29_[+12(1.84e-31)]_5_\
    [+3(2.66e-35)]_[+19(1.48e-18)]_7_[+2(2.72e-36)]_49
NC_007426.1                      0.00e+00  48_[+9(2.83e-32)]_23_\
    [+10(9.29e-31)]_[+20(1.21e-12)]_6_[+13(5.46e-31)]_12_[+6(1.77e-32)]_\
    [+18(2.57e-24)]_48_[+8(2.27e-32)]_[+16(3.11e-24)]_39_[+11(3.63e-31)]_24_\
    [+5(1.59e-34)]_31_[+14(7.29e-31)]_1_[+1(2.07e-35)]_[+15(1.31e-23)]_23_\
    [+4(2.94e-35)]_26_[+17(4.10e-25)]_1_[+7(6.49e-32)]_29_[+12(4.07e-29)]_5_\
    [+3(5.23e-35)]_[+19(2.00e-20)]_[+2(1.62e-35)]_49
NC_007681.1                      0.00e+00  59_[+9(2.14e-28)]_27_\
    [+10(1.09e-29)]_[+20(6.07e-13)]_6_[+13(5.33e-29)]_12_[+6(1.06e-30)]_\
    [+18(6.76e-17)]_47_[+8(1.38e-30)]_[+16(1.27e-23)]_39_[+11(4.41e-32)]_24_\
    [+5(6.88e-32)]_31_[+14(7.99e-27)]_1_[+1(4.85e-35)]_[+15(4.30e-27)]_21_\
    [+4(2.94e-35)]_26_[+17(1.99e-25)]_1_[+7(9.19e-30)]_29_[+12(1.83e-32)]_5_\
    [+3(1.05e-32)]_[+19(3.77e-16)]_9_[+2(1.55e-33)]_52
NC_007796.1                      0.00e+00  48_[+9(3.17e-33)]_27_\
    [+10(1.35e-28)]_[+20(4.80e-15)]_4_[+13(7.80e-30)]_12_[+6(2.40e-34)]_\
    [+18(4.15e-20)]_43_[+8(5.24e-32)]_[+16(1.43e-23)]_39_[+11(9.79e-31)]_24_\
    [+5(5.10e-34)]_31_[+14(2.16e-26)]_1_[+1(1.65e-34)]_[+15(2.33e-24)]_21_\
    [+4(1.33e-33)]_26_[+17(4.67e-23)]_1_[+7(2.09e-31)]_29_[+12(1.90e-28)]_5_\
    [+3(1.58e-35)]_[+19(4.99e-14)]_4_[+2(2.72e-36)]_50
NC_007955.1                      0.00e+00  49_[+9(5.42e-32)]_29_\
    [+10(1.73e-29)]_[+20(1.53e-15)]_6_[+13(1.72e-24)]_12_[+6(2.04e-32)]_\
    [+18(1.11e-21)]_46_[+8(1.64e-31)]_[+16(7.19e-24)]_39_[+11(4.24e-30)]_24_\
    [+5(3.47e-33)]_31_[+14(3.05e-27)]_1_[+1(5.16e-36)]_[+15(4.27e-29)]_21_\
    [+4(3.37e-35)]_26_[+17(9.41e-26)]_1_[+7(2.72e-35)]_29_[+12(4.04e-31)]_5_\
    [+3(1.07e-36)]_[+19(2.97e-18)]_7_[+2(2.72e-36)]_49
NC_008212.2                      0.00e+00  49_[+9(5.09e-33)]_28_\
    [+10(2.24e-28)]_[+20(4.41e-09)]_6_[+13(1.09e-25)]_12_[+6(9.74e-31)]_\
    [+18(7.52e-24)]_48_[+8(5.49e-33)]_[+16(2.47e-23)]_39_[+11(1.82e-28)]_24_\
    [+5(5.67e-32)]_31_[+14(1.06e-27)]_1_[+1(2.07e-35)]_[+15(8.90e-22)]_24_\
    [+4(2.94e-35)]_26_[+17(3.06e-24)]_1_[+7(4.44e-31)]_28_[+12(5.95e-30)]_5_\
    [+3(9.53e-29)]_[+19(4.81e-22)]_[+2(1.62e-35)]_50
NC_008942.1                      0.00e+00  46_[+9(4.20e-32)]_27_\
    [+10(1.56e-28)]_[+20(2.33e-18)]_4_[+13(1.37e-28)]_12_[+6(1.36e-30)]_\
    [+18(1.12e-20)]_43_[+8(1.14e-30)]_[+16(2.75e-23)]_39_[+11(1.55e-28)]_24_\
    [+5(1.06e-31)]_31_[+14(1.18e-23)]_1_[+1(1.31e-34)]_[+15(4.05e-23)]_21_\
    [+4(3.37e-35)]_26_[+17(1.33e-23)]_1_[+7(6.49e-32)]_29_[+12(5.40e-26)]_5_\
    [+3(1.78e-34)]_[+19(4.77e-17)]_5_[+2(1.79e-34)]_50
NC_009440.1                      0.00e+00  49_[+9(2.37e-27)]_33_\
    [+10(2.07e-29)]_[+20(2.88e-10)]_24_[+13(3.38e-23)]_12_[+6(6.58e-28)]_\
    [+18(3.98e-17)]_43_[+8(3.21e-28)]_[+16(2.87e-18)]_38_[+11(1.68e-27)]_24_\
    [+5(1.67e-28)]_31_[+14(1.74e-25)]_1_[+1(9.26e-33)]_[+15(7.28e-25)]_21_\
    [+4(8.43e-30)]_25_[+17(5.87e-21)]_1_[+7(2.50e-28)]_29_[+12(6.97e-27)]_5_\
    [+3(5.82e-33)]_[+19(5.80e-13)]_11_[+2(4.67e-32)]_59
NC_009515.2                      0.00e+00  48_[+9(5.12e-29)]_28_\
    [+10(1.23e-31)]_[+20(1.23e-18)]_5_[+13(1.61e-25)]_12_[+6(4.18e-32)]_\
    [+18(4.38e-13)]_48_[+8(7.61e-30)]_[+16(1.33e-26)]_39_[+11(1.13e-27)]_24_\
    [+5(6.12e-36)]_31_[+14(2.36e-27)]_1_[+1(4.85e-35)]_[+15(2.33e-27)]_21_\
    [+4(2.94e-35)]_28_[+17(3.09e-22)]_1_[+7(1.67e-31)]_29_[+12(1.52e-29)]_5_\
    [+3(2.24e-35)]_[+19(1.47e-15)]_6_[+2(4.43e-33)]_49
NC_009712.1                      0.00e+00  47_[+9(1.41e-34)]_27_\
    [+10(1.06e-31)]_[+20(3.05e-21)]_4_[+13(4.65e-31)]_12_[+6(2.40e-34)]_\
    [+18(6.94e-22)]_43_[+8(3.00e-32)]_[+16(5.48e-28)]_39_[+11(5.97e-32)]_24_\
    [+5(2.52e-33)]_31_[+14(3.38e-25)]_1_[+1(1.65e-34)]_[+15(2.10e-24)]_21_\
    [+4(3.37e-35)]_26_[+17(1.36e-22)]_1_[+7(3.24e-31)]_29_[+12(1.55e-32)]_5_\
    [+3(1.53e-32)]_[+19(9.21e-20)]_6_[+2(2.72e-36)]_49
NC_012028.1                      0.00e+00  48_[+9(4.20e-32)]_28_\
    [+10(2.24e-28)]_[+20(5.56e-13)]_5_[+13(2.18e-30)]_12_[+6(3.71e-32)]_\
    [+18(1.98e-21)]_48_[+8(5.49e-33)]_[+16(1.89e-24)]_39_[+11(4.12e-31)]_24_\
    [+5(2.86e-33)]_31_[+14(4.40e-26)]_1_[+1(2.07e-35)]_[+15(8.33e-22)]_22_\
    [+4(2.94e-35)]_26_[+17(7.47e-18)]_1_[+7(7.34e-32)]_29_[+12(1.55e-30)]_5_\
    [+3(3.78e-35)]_[+19(5.35e-20)]_[+2(2.98e-34)]_50
NC_013201.1                      0.00e+00  49_[+9(5.09e-33)]_28_\
    [+10(1.44e-29)]_[+20(5.25e-10)]_6_[+13(3.26e-29)]_12_[+6(2.37e-30)]_\
    [+18(1.45e-25)]_48_[+8(1.85e-31)]_[+16(2.74e-22)]_39_[+11(1.63e-31)]_24_\
    [+5(2.86e-33)]_31_[+14(1.06e-23)]_1_[+1(2.07e-35)]_[+15(1.05e-20)]_22_\
    [+4(2.59e-34)]_26_[+17(1.23e-22)]_1_[+7(6.66e-31)]_29_[+12(4.54e-32)]_5_\
    [+3(5.23e-35)]_[+19(2.09e-21)]_1_[+2(9.04e-34)]_49
NC_013202.1                      0.00e+00  49_[+9(5.09e-33)]_28_\
    [+10(1.43e-31)]_[+20(1.32e-12)]_5_[+13(6.83e-32)]_12_[+6(2.37e-30)]_\
    [+18(1.45e-25)]_48_[+8(1.55e-33)]_[+16(3.06e-23)]_39_[+11(3.07e-30)]_24_\
    [+5(3.33e-34)]_31_[+14(3.11e-29)]_1_[+1(2.07e-35)]_[+15(9.09e-23)]_23_\
    [+4(2.94e-35)]_27_[+17(5.42e-25)]_1_[+7(6.66e-31)]_29_[+12(1.33e-32)]_5_\
    [+3(5.23e-35)]_[+19(2.86e-21)]_1_[+2(1.62e-35)]_49
NC_013849.1                      0.00e+00  48_[+9(1.27e-28)]_44_\
    [+10(1.69e-33)]_[+20(3.25e-14)]_24_[+13(1.26e-26)]_12_[+6(1.69e-29)]_\
    [+18(7.47e-19)]_47_[+8(4.35e-30)]_[+16(7.63e-25)]_39_[+11(4.68e-31)]_24_\
    [+5(7.27e-33)]_31_[+14(2.08e-28)]_1_[+1(5.16e-36)]_[+15(9.98e-24)]_21_\
    [+4(9.84e-35)]_28_[+17(2.08e-24)]_1_[+7(9.75e-33)]_29_[+12(2.24e-27)]_5_\
    [+3(1.27e-32)]_[+19(1.47e-15)]_6_[+2(2.32e-34)]_50
NC_013926.1                      0.00e+00  46_[+9(3.69e-32)]_32_\
    [+10(2.17e-33)]_[+20(2.34e-19)]_4_[+13(3.00e-28)]_12_[+6(3.45e-34)]_\
    [+18(1.11e-21)]_47_[+8(3.82e-33)]_[+16(7.36e-22)]_38_[+11(1.07e-31)]_24_\
    [+5(8.04e-33)]_31_[+14(1.37e-24)]_1_[+1(4.30e-33)]_[+15(2.85e-24)]_25_\
    [+4(3.41e-29)]_25_[+17(3.41e-22)]_1_[+7(1.57e-30)]_28_[+12(1.46e-28)]_5_\
    [+3(3.96e-31)]_[+19(1.20e-19)]_6_[+2(1.83e-33)]_47
NC_014205.1                      0.00e+00  49_[+9(4.50e-28)]_34_\
    [+10(9.23e-29)]_[+20(1.29e-13)]_26_[+13(5.71e-28)]_12_[+6(4.74e-29)]_\
    [+18(2.03e-19)]_45_[+8(1.64e-28)]_[+16(9.52e-22)]_38_[+11(4.68e-31)]_24_\
    [+5(6.24e-32)]_31_[+14(9.51e-30)]_1_[+1(3.74e-35)]_[+15(8.79e-26)]_21_\
    [+4(4.17e-31)]_25_[+17(3.97e-15)]_2_[+7(1.33e-31)]_29_[+12(1.06e-27)]_5_\
    [+3(1.42e-33)]_[+19(3.81e-13)]_19_[+2(4.80e-33)]_49
NC_014253.1                      0.00e+00  46_[+9(4.62e-30)]_29_\
    [+10(8.75e-33)]_[+20(5.98e-15)]_5_[+13(2.54e-25)]_12_[+6(5.49e-34)]_\
    [+18(2.08e-25)]_47_[+8(8.85e-32)]_[+16(7.19e-24)]_39_[+11(1.91e-29)]_24_\
    [+5(3.47e-33)]_31_[+14(6.95e-28)]_1_[+1(5.16e-36)]_[+15(1.92e-29)]_21_\
    [+4(3.37e-35)]_26_[+17(1.50e-23)]_1_[+7(1.09e-35)]_29_[+12(7.36e-30)]_5_\
    [+3(1.07e-36)]_[+19(3.15e-16)]_10_[+2(2.72e-36)]_50
NC_014507.1                      0.00e+00  48_[+9(1.11e-34)]_28_\
    [+10(2.92e-31)]_[+20(7.58e-19)]_4_[+13(6.83e-32)]_12_[+6(1.12e-34)]_\
    [+18(6.16e-22)]_43_[+8(5.49e-33)]_[+16(3.04e-26)]_39_[+11(9.79e-31)]_24_\
    [+5(4.31e-33)]_31_[+14(1.60e-25)]_1_[+1(5.16e-36)]_[+15(1.58e-21)]_21_\
    [+4(1.33e-33)]_26_[+17(1.83e-24)]_1_[+7(2.30e-32)]_29_[+12(5.95e-30)]_5_\
    [+3(2.74e-34)]_[+19(5.35e-20)]_5_[+2(2.72e-36)]_50
NC_014729.1                      0.00e+00  46_[+9(2.47e-32)]_28_\
    [+10(2.10e-27)]_[+20(2.76e-12)]_5_[+13(5.46e-31)]_12_[+6(4.09e-33)]_\
    [+18(1.43e-26)]_48_[+8(8.89e-33)]_[+16(3.25e-21)]_39_[+11(4.24e-30)]_24_\
    [+5(1.59e-34)]_31_[+14(1.75e-29)]_1_[+1(2.07e-35)]_[+15(2.25e-22)]_23_\
    [+4(2.94e-35)]_26_[+17(1.11e-22)]_1_[+7(5.45e-31)]_29_[+12(4.95e-33)]_5_\
    [+3(2.23e-33)]_[+19(2.36e-18)]_1_[+2(1.62e-35)]_59
NC_015216.1                      0.00e+00  48_[+9(5.05e-30)]_34_\
    [+10(1.33e-30)]_[+20(5.37e-14)]_5_[+13(8.02e-27)]_12_[+6(9.18e-33)]_\
    [+18(5.80e-19)]_47_[+8(3.28e-33)]_[+16(1.12e-26)]_39_[+11(9.28e-32)]_24_\
    [+5(6.88e-32)]_31_[+14(3.91e-27)]_1_[+1(4.85e-35)]_[+15(1.56e-29)]_21_\
    [+4(2.94e-35)]_28_[+17(3.94e-24)]_1_[+7(1.74e-32)]_29_[+12(3.93e-35)]_5_\
    [+3(4.15e-34)]_[+19(2.79e-14)]_9_[+2(8.46e-33)]_50
NC_015416.1                      0.00e+00  45_[+9(2.16e-32)]_26_\
    [+10(6.16e-28)]_[+20(2.72e-18)]_4_[+13(5.33e-26)]_12_[+6(2.18e-33)]_\
    [+18(8.12e-20)]_47_[+8(3.66e-31)]_[+16(9.06e-24)]_39_[+11(2.33e-32)]_24_\
    [+5(3.29e-31)]_31_[+14(3.45e-27)]_1_[+1(5.71e-35)]_[+15(1.36e-30)]_21_\
    [+4(3.37e-35)]_26_[+17(2.65e-26)]_1_[+7(1.72e-30)]_29_[+12(9.29e-32)]_5_\
    [+3(1.17e-34)]_[+19(2.03e-19)]_6_[+2(2.72e-36)]_50
NC_015518.1                      0.00e+00  48_[+9(2.24e-27)]_34_\
    [+10(1.35e-28)]_[+20(1.87e-10)]_25_[+13(1.09e-25)]_12_[+6(8.40e-29)]_\
    [+18(3.89e-15)]_43_[+8(1.38e-27)]_[+16(5.00e-19)]_38_[+11(1.47e-26)]_24_\
    [+5(5.18e-29)]_31_[+14(2.65e-25)]_1_[+1(9.26e-33)]_[+15(7.28e-25)]_21_\
    [+4(8.43e-30)]_25_[+17(8.17e-22)]_1_[+7(2.11e-28)]_30_[+12(5.29e-27)]_5_\
    [+3(2.19e-32)]_[+19(4.99e-14)]_11_[+2(4.67e-32)]_49
NC_015954.1                      0.00e+00  49_[+9(3.17e-33)]_28_\
    [+10(6.74e-29)]_[+20(7.03e-10)]_5_[+13(5.46e-31)]_12_[+6(4.09e-33)]_\
    [+18(1.79e-22)]_48_[+8(1.06e-32)]_[+16(6.62e-27)]_39_[+11(2.75e-30)]_24_\
    [+5(6.61e-34)]_31_[+14(1.40e-26)]_1_[+1(2.07e-35)]_[+15(2.58e-20)]_24_\
    [+4(2.94e-35)]_27_[+17(6.23e-25)]_1_[+7(2.26e-30)]_29_[+12(9.37e-29)]_5_\
    [+3(4.57e-29)]_[+19(8.10e-19)]_[+2(1.62e-35)]_49
NC_017461.1                      0.00e+00  49_[+9(2.59e-28)]_34_\
    [+10(8.97e-30)]_[+20(7.54e-11)]_26_[+13(4.91e-25)]_12_[+6(2.03e-28)]_\
    [+18(3.98e-17)]_46_[+8(3.38e-28)]_[+16(8.96e-19)]_38_[+11(4.37e-29)]_24_\
    [+5(1.23e-32)]_31_[+14(3.75e-29)]_1_[+1(4.86e-34)]_[+15(8.29e-24)]_21_\
    [+4(1.49e-28)]_25_[+17(2.12e-15)]_2_[+7(2.26e-30)]_29_[+12(1.19e-26)]_5_\
    [+3(2.01e-32)]_[+19(2.79e-14)]_9_[+2(1.31e-33)]_49
NC_017527.1                      0.00e+00  48_[+9(3.56e-31)]_29_\
    [+10(6.68e-30)]_[+20(2.48e-21)]_5_[+13(3.16e-18)]_12_[+6(2.18e-33)]_\
    [+18(1.36e-24)]_47_[+8(1.00e-31)]_[+16(3.97e-24)]_39_[+11(7.47e-28)]_24_\
    [+5(8.82e-33)]_31_[+14(1.60e-25)]_1_[+1(5.16e-36)]_[+15(1.35e-34)]_21_\
    [+4(3.37e-35)]_26_[+17(1.28e-27)]_1_[+7(3.85e-33)]_29_[+12(4.04e-31)]_5_\
    [+3(1.17e-34)]_[+19(4.07e-22)]_6_[+2(2.72e-36)]_50
NC_020892.1                      0.00e+00  48_[+9(2.93e-28)]_24_\
    [+10(3.40e-28)]_[+20(1.16e-19)]_4_[+13(7.98e-26)]_12_[+6(2.19e-30)]_\
    [+18(1.22e-17)]_47_[+8(2.34e-31)]_[+16(1.04e-21)]_38_[+11(1.07e-31)]_24_\
    [+5(6.13e-27)]_31_[+14(3.01e-23)]_1_[+1(4.86e-34)]_[+15(3.45e-22)]_21_\
    [+4(3.41e-29)]_25_[+17(1.72e-19)]_1_[+7(2.69e-30)]_28_[+12(1.04e-26)]_5_\
    [+3(1.29e-30)]_[+19(3.15e-16)]_5_[+2(1.11e-31)]_50
NC_021313.1                      0.00e+00  49_[+9(1.17e-33)]_28_\
    [+10(1.33e-30)]_[+20(1.43e-12)]_5_[+13(2.18e-30)]_12_[+6(5.76e-31)]_\
    [+18(4.78e-24)]_48_[+8(4.53e-33)]_[+16(4.73e-22)]_39_[+11(3.42e-30)]_24_\
    [+5(9.72e-32)]_31_[+14(7.11e-26)]_1_[+1(2.07e-35)]_[+15(3.45e-22)]_23_\
    [+4(2.94e-35)]_26_[+17(1.86e-22)]_1_[+7(3.60e-31)]_29_[+12(1.22e-30)]_5_\
    [+3(1.30e-31)]_[+19(7.03e-20)]_[+2(9.78e-34)]_49
NC_021592.1                      0.00e+00  49_[+9(2.02e-30)]_28_\
    [+10(1.98e-27)]_[+20(1.29e-13)]_4_[+13(3.24e-26)]_12_[+6(2.02e-30)]_\
    [+18(6.80e-18)]_46_[+8(4.73e-30)]_[+16(1.43e-20)]_38_[+11(3.05e-29)]_24_\
    [+5(3.59e-32)]_31_[+14(1.24e-22)]_1_[+1(7.41e-33)]_[+15(1.67e-22)]_21_\
    [+4(8.90e-30)]_25_[+17(3.14e-17)]_1_[+7(2.96e-28)]_28_[+12(9.04e-28)]_5_\
    [+3(4.23e-31)]_[+19(1.15e-15)]_7_[+2(1.93e-32)]_50
NC_022093.1                      0.00e+00  57_[+9(2.19e-26)]_36_\
    [+10(3.55e-33)]_[+20(8.76e-14)]_24_[+13(3.26e-29)]_12_[+6(1.38e-28)]_\
    [+18(5.04e-18)]_46_[+8(7.72e-28)]_[+16(9.34e-21)]_37_[+11(5.69e-29)]_24_\
    [+5(7.85e-30)]_31_[+14(5.40e-29)]_1_[+1(3.79e-33)]_[+15(1.46e-27)]_21_\
    [+4(2.65e-30)]_25_[+17(6.48e-23)]_1_[+7(6.03e-29)]_29_[+12(9.14e-27)]_5_\
    [+3(6.13e-34)]_[+19(1.12e-12)]_10_[+2(1.05e-31)]_53
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because couldn't find any more starting points for EM.
********************************************************************************

CPU: zebra

********************************************************************************
