Author: Guido Hooiveld (guido.hooiveld@wur.nl)
Date: 11 January 2023

This ZIP-archive contains six files reported on in the manuscript:
Title: Systematic comparison of transcriptomes of Caco-2 cells cultured under different cellular and physiological conditions.
Authors: Janneke Elzinga, Menno Grouls, Guido Hooiveld et al.
Published in: Archives of Toxicology (2023), DOI: 10.1007/s00204-022-03430-y

** caco2_transcriptome_comparison.html
 -- HTML file containing R-code to generate all data and figures presented in the manuscript.

** Supplementary_file_1d.xlsx
 -- Excel file containing an overview of samples used in the manuscript that were arrayed on the Affymetrix platform.

** helpFunctions.R
 -- set of help functions used to analyze the Affymetrix microarray data sets.

** combined.dataset.rpt.100samples.Rdata
 -- R-data file containing the rank percentile transformed (rpt) expression values of the 11203 common features in 100 samples.

** combined.dataset.probit.100samples.Rdata
 -- R-data file containing the probit-transformed rpt expression values of the 11203 common features in 100 samples.

** README.txt
 -- this readme file.
