/lustre/atlas2/csc206/proj-shared/kevin/sc16-amd-branch
nid02341
Application 13020539 resources: utime ~0s, stime ~0s, Rss ~7244, inblocks ~19, outblocks ~28
Welcome to Ludwig v0.5.80 (MPI version running on 2 processes)

The SVN revision details are: 3050M
Read 31 user parameters from input

System details
--------------
System size:    128 128 128
Decomposition:  2 1 1
Local domain:   64 128 128
Periodic:       1 1 1
Halo nhalo:     2
Reorder:        true
Initialised:    1

Free energy details
-------------------

Blue phase free energy selected.

Liquid crystal blue phase free energy
Bulk parameter A0:         =  1.0000000e-02
Magnitude of order gamma   =  3.0000000e+00
Pitch wavevector q0        =  1.9635000e-01
... gives pitch length     =  3.1999925e+01
Elastic constant kappa0    =  6.4845600e-04
Elastic constant kappa1    =  6.4845600e-04
Amplitude (uniaxial) order =  3.3333333e-01
Effective aspect ratio xi  =  7.0000000e-01
Chirality                  =  3.0000080e-01
Reduced temperature        =  0.0000000e+00
Initial redshift           =  1.0000000e+00
Dynamic redshift update    =             no
LC activity constant zeta  =  0.0000000e+00

Liquid crystal anchoring
Anchoring method:          =            two
Anchoring type (colloids): =         normal
Anchoring type (walls):          =         normal
Surface free energy (colloid)w1: =  2.5938240e-03
Surface free energy (colloid)w2: =  0.0000000e+00
Surface free energy (wall) w1:   =  0.0000000e+00
Surface free energy (wall) w2:   =  0.0000000e+00
Ratio (colloid) w1/kappa0:       =  4.0000000e+00
Ratio (wall) w1/kappa0:          =  0.0000000e+00
Computed surface order f(gamma)  =  3.3333333e-01

Using Beris-Edwards solver:
Rotational diffusion const =  5.0000000e-01
LC fluctuations:           =  off

System properties
----------------
Mean fluid density:           1.00000e+00
Shear viscosity               1.00000e+00
Bulk viscosity                1.00000e+00
Temperature                   0.00000e+00
External body force density   0.00000e+00  0.00000e+00  0.00000e+00
External E-field amplitude    0.00000e+00  0.00000e+00  0.00000e+00
External E-field frequency    0.00000e+00
External magnetic field       0.00000e+00  0.00000e+00  0.00000e+00

Lattice Boltzmann distributions
-------------------------------
Model:            d3q19  
SIMD vector len:  1
Number of sets:   1
Halo type:        full
Input format:     binary
Output format:    binary
I/O grid:         1 1 1

Lattice Boltzmann collision
---------------------------
Hydrodynamic modes:       on
Ghost modes:              on
Isothermal fluctuations:  off
Shear relaxation time:    3.50000e+00
Bulk relaxation time:     3.50000e+00
Ghost relaxation time:    1.00000e+00
[User   ] Random number seed: 8361235

Hydrodynamics
-------------
Hydrodynamics: on

Order parameter I/O
-------------------
Order parameter I/O format:   
I/O decomposition:            1 1 1

Advection scheme order: 3
Gradient calcaulation: 3d_7pt_fluid


Initialising Q_ab to cholesteric
Helical axis Z
Initial conditions.

Scalars - total mean variance min max
[rho]     2097152.00  1.00000000000  0.0000000e+00  1.00000000000  1.00000000000
[phi]  1.7476388e+05  8.3333910e-02 3.1250069e-02 -1.6666667e-01 3.3333333e-01
[phi]  2.4079829e-01  1.1482157e-07 3.1249931e-02 -2.5000000e-01 2.5000000e-01
[phi]  0.0000000e+00  0.0000000e+00 0.0000000e+00  0.0000000e+00 0.0000000e+00
[phi]  1.7476146e+05  8.3332756e-02 3.1250069e-02 -1.6666667e-01 3.3333333e-01
[phi]  0.0000000e+00  0.0000000e+00 0.0000000e+00  0.0000000e+00 0.0000000e+00

Momentum - x y z
[total   ]  2.9103830e-11  0.0000000e+00  0.0000000e+00
[fluid   ]  2.9103830e-11  0.0000000e+00  0.0000000e+00

Starting time step loop.

Scalars - total mean variance min max
[rho]     2097152.00  0.99999999998  3.4473757e-11  0.99999999991  1.00000000302
[phi]  1.7303123e+05  8.2507719e-02 3.1029972e-02 -1.6661093e-01 3.3162533e-01
[phi]  2.2790390e-01  1.0867305e-07 3.1029859e-02 -2.4911811e-01 2.4911811e-01
[phi]  1.2694110e-12  6.0530235e-19 2.4351748e-33 -1.3127508e-16 1.0504498e-16
[phi]  1.7302894e+05  8.2506627e-02 3.1029972e-02 -1.6661097e-01 3.3162528e-01
[phi] -4.9039184e-13 -2.3383705e-19 1.3100910e-33 -9.2409055e-17 1.2802092e-16

Free energy density - timestep total fluid
[fed]           1000 -6.7377806476e-05 -6.7377806476e-05

Momentum - x y z
[total   ] -8.8897423e-10 -1.0114150e-09 -7.6170181e-11
[fluid   ] -8.8897423e-10 -1.0114150e-09 -7.6170181e-11

Velocity - x y z
[minimum ] -4.8573987e-16 -5.3429854e-16 -1.6326076e-12
[maximum ]  1.1754944e-38  1.1754944e-38  1.6323752e-12

Completed cycle 1000

Timer resolution: 1e-06 second

Timer statistics
             Section:       tmin       tmax      total
               Total:    568.846    568.847    568.847 568.846595 (1 call)
      Time step loop:      0.559      0.806    567.825   0.567825 (1000 calls)
         Propagation:      0.059      0.085     62.260   0.062260 (1000 calls)
    Propagtn (krnl) :      0.059      0.085     62.255   0.062255 (1000 calls)
           Collision:      0.095      0.126     95.736   0.095736 (1000 calls)
   Collision (krnl) :      0.095      0.126     95.729   0.095729 (1000 calls)
       Lattice halos:      0.009      0.034     10.362   0.010362 (1000 calls)
       phi gradients:      0.039      0.143     40.534   0.040534 (1000 calls)
    phi grad (krnl) :      0.033      0.059     34.285   0.034285 (1000 calls)
           phi halos:      0.005      0.089      6.242   0.006242 (1000 calls)
                 BBL:      0.000      0.000      0.001   0.000001 (1000 calls)
   Force calculation:      0.158      0.190    158.606   0.158606 (1000 calls)
   Phi force (krnl) :      0.023      0.024     23.207   0.023207 (1000 calls)
          phi update:      0.190      0.252    194.534   0.194534 (1000 calls)
      Velocity Halo :      0.002      0.032      2.453   0.002453 (1000 calls)
BE mol field (krnl) :      0.043      0.049     43.615   0.043615 (1000 calls)
BP BE update (krnl) :      0.052      0.054     52.907   0.052907 (1000 calls)
     Advectn (krnl) :      0.047      0.074     49.623   0.049623 (1000 calls)
 Advectn BCS (krnl) :      0.035      0.043     39.087   0.039087 (1000 calls)
               Free1:      0.000      0.549      0.550   0.000550 (1000 calls)
Ludwig finished normally.
Application 13020541 resources: utime ~9089s, stime ~3s, Rss ~992428, inblocks ~1484, outblocks ~2682
