0000000000000000000000000000000000000000 66334cb7090575d5724a43bc40f0c7c90225ae36 remi.vezy <VEZY@users.noreply.github.com> 1635269248 +0200	commit (initial): First commit of the code for the paper stics-IC
66334cb7090575d5724a43bc40f0c7c90225ae36 73f5b3abc0a4a6e0fd4162b5a1bc31785403b585 remi.vezy <VEZY@users.noreply.github.com> 1635431271 +0200	commit: Rename figs + update them
73f5b3abc0a4a6e0fd4162b5a1bc31785403b585 7e06bed6af6994ed4400e83fd52fbb9670ae58cd remi.vezy <VEZY@users.noreply.github.com> 1635512439 +0200	commit: Make Fig.2 on usms with optimized parameters + optimize params with beer option
7e06bed6af6994ed4400e83fd52fbb9670ae58cd 0841250db49c6b96866228102e48fd7ae9d47204 remi.vezy <VEZY@users.noreply.github.com> 1636211952 +0100	commit: Add transform_obs/sim to better optimize yield and pheneoly related parameters
0841250db49c6b96866228102e48fd7ae9d47204 7067c5fe3bfdc1ecc510beb1d363a68450c316c0 remi.vezy <VEZY@users.noreply.github.com> 1637074746 +0100	commit: Rename files by step + add figure 4
7067c5fe3bfdc1ecc510beb1d363a68450c316c0 4b0d290bf1d82625492c7a5053ed4738c9d4edd2 remi.vezy <VEZY@users.noreply.github.com> 1637253107 +0100	commit: Rename 3-optim
4b0d290bf1d82625492c7a5053ed4738c9d4edd2 08672e528fe8b617d3b8567550c95855b1668499 remi.vezy <VEZY@users.noreply.github.com> 1637863789 +0100	commit: Update to new version of filter_ob + now using 2011 for fababean-wheat
08672e528fe8b617d3b8567550c95855b1668499 366862beb4d5c290b8d858039a69ecce0b14948f remi.vezy <VEZY@users.noreply.github.com> 1637864852 +0100	commit: Update figure_1_self-intercrops.R
366862beb4d5c290b8d858039a69ecce0b14948f 4f5e6c914b29dd559bf658455ca3deb53bc59a5a remi.vezy <VEZY@users.noreply.github.com> 1642095967 +0100	commit: Update stics version
4f5e6c914b29dd559bf658455ca3deb53bc59a5a 033848cac65161034c4adcdccbab13923ef8477b remi.vezy <VEZY@users.noreply.github.com> 1642682911 +0100	commit: Export optim process into function + make a first manual optimisation of the parameters to help the automatic optimisation
033848cac65161034c4adcdccbab13923ef8477b 90730cb2ff6d84e73b471afbb0c7ca4d750782f2 remi.vezy <VEZY@users.noreply.github.com> 1642683450 +0100	commit: Add manually optimized usms (from which everything starts from) + the calibration file
90730cb2ff6d84e73b471afbb0c7ca4d750782f2 955b7913765078629ac4be8f84d2dc84ce616cdf remi.vezy <VEZY@users.noreply.github.com> 1642688594 +0100	commit: Update 2-optimisation-beer.R
955b7913765078629ac4be8f84d2dc84ce616cdf 9a8318bfe48bf616266144dea17b255ed07acca3 remi.vezy <VEZY@users.noreply.github.com> 1643360016 +0100	commit: Update scripts
9a8318bfe48bf616266144dea17b255ed07acca3 9e24e40a703cc41f206c0b0af074c1570eef3836 remi.vezy <VEZY@users.noreply.github.com> 1643360028 +0100	commit: Update .gitignore
9e24e40a703cc41f206c0b0af074c1570eef3836 88a2050795e4f0d8bf402c6a378823b6f5d05fef remi.vezy <VEZY@users.noreply.github.com> 1643360832 +0100	commit: Update gitignore: remove simulated files
88a2050795e4f0d8bf402c6a378823b6f5d05fef 9212a3064b68ee3a7fcaddd67ff7753fffe67682 remi.vezy <VEZY@users.noreply.github.com> 1643711150 +0100	commit: Add LER to figure 3
9212a3064b68ee3a7fcaddd67ff7753fffe67682 dc3ebd034dd3635bd35f893f5c9e62842ef1b8aa remi.vezy <VEZY@users.noreply.github.com> 1643711168 +0100	commit: Update figure_1_self-intercrops.R
dc3ebd034dd3635bd35f893f5c9e62842ef1b8aa 4860ae7f0b224a68c80fb628dfc697a9d259b736 remi.vezy <VEZY@users.noreply.github.com> 1643717472 +0100	commit: Update figure_1_self-intercrops.R
4860ae7f0b224a68c80fb628dfc697a9d259b736 0e52b043ca59e1eed182c92ebf5784985f0e5c37 remi.vezy <VEZY@users.noreply.github.com> 1643717670 +0100	commit: Update figure_2_plant_interactions.R
0e52b043ca59e1eed182c92ebf5784985f0e5c37 d7bdc9f12585d47d7e4b4bc53f7bd836b45a48d7 remi.vezy <VEZY@users.noreply.github.com> 1643730731 +0100	commit: Update figure_2_plant_interactions.R
d7bdc9f12585d47d7e4b4bc53f7bd836b45a48d7 6d0e8764ecfa094a3c6db81fce3d0958eeb11f1b remi.vezy <VEZY@users.noreply.github.com> 1643793592 +0100	commit: Add stats computation to fig 2
6d0e8764ecfa094a3c6db81fce3d0958eeb11f1b e829660ab88c4261bc7c4a66d5c1a025718a1695 remi.vezy <VEZY@users.noreply.github.com> 1643798739 +0100	commit: Update figure_2_plant_interactions.R
e829660ab88c4261bc7c4a66d5c1a025718a1695 f582943fcba1ef979765b7442f8063b1b960ce3a remi.vezy <VEZY@users.noreply.github.com> 1643798752 +0100	commit: Update figure_3_contrasted_systems.R
f582943fcba1ef979765b7442f8063b1b960ce3a ad8635eabfed7ce8daad62fb761c5b1faddcb978 remi.vezy <VEZY@users.noreply.github.com> 1643803244 +0100	commit: Rename Grain yield into Grain for fig1&2 + name the image outputs as the fig. in the article
ad8635eabfed7ce8daad62fb761c5b1faddcb978 78cdedcca536cb0da258c9e160a5029d629f4f7d remi.vezy <VEZY@users.noreply.github.com> 1643821099 +0100	commit: Update figure_1_self-intercrops.R
78cdedcca536cb0da258c9e160a5029d629f4f7d eabdbf0a7cb213917dd00cc08bbf13f0459da7bd remi.vezy <VEZY@users.noreply.github.com> 1643821429 +0100	commit: Add self-intercrop for Auzeville Pea
eabdbf0a7cb213917dd00cc08bbf13f0459da7bd d2549abf8b58966e162914d5cd31334d7671c478 remi.vezy <VEZY@users.noreply.github.com> 1643905509 +0100	commit: Make the fig3 x and y labs more visible
d2549abf8b58966e162914d5cd31334d7671c478 a5bf018b7c60a7849fb43e671d8032465ebbda68 remi.vezy <VEZY@users.noreply.github.com> 1644320909 +0100	commit: Update figure_3_contrasted_systems.R
a5bf018b7c60a7849fb43e671d8032465ebbda68 f283c20a54fc3d8dae4f69136a7d4e2e27f3e321 remi.vezy <VEZY@users.noreply.github.com> 1650035407 +0200	commit: Add code for presentation
f283c20a54fc3d8dae4f69136a7d4e2e27f3e321 34ebd4b3b4f7371b3733237df1749703dbbd867d remi.vezy <VEZY@users.noreply.github.com> 1650039839 +0200	commit: Create figure_1_self-intercrops_table.R
34ebd4b3b4f7371b3733237df1749703dbbd867d ea2d069a5453dc4159238d90e64f8643c3d35b89 remi.vezy <VEZY@users.noreply.github.com> 1650536633 +0200	commit: Improve fig.1: show all species
ea2d069a5453dc4159238d90e64f8643c3d35b89 780d2b38eaa4e697c4eac66d35bcec3b23208797 remi.vezy <VEZY@users.noreply.github.com> 1650536940 +0200	commit: Update figure_2_plant_interactions.R
780d2b38eaa4e697c4eac66d35bcec3b23208797 9e6fb7d1ee7770b4aa78644ebf31567dbe13feed remi.vezy <VEZY@users.noreply.github.com> 1650538412 +0200	commit: Update figure_2_plant_interactions.R
9e6fb7d1ee7770b4aa78644ebf31567dbe13feed cd8f95627b650b27cc1528fc43cb72a0b359ff6c remi.vezy <VEZY@users.noreply.github.com> 1650545672 +0200	commit: Clean up figure_1_self-intercrops_all
cd8f95627b650b27cc1528fc43cb72a0b359ff6c aa789c8194a11958f46fc7119fd1108cf0b20489 remi.vezy <VEZY@users.noreply.github.com> 1650545715 +0200	commit: Update figure_3_contrasted_systems.R
aa789c8194a11958f46fc7119fd1108cf0b20489 dc37dfdff99db0f713f0d511981d7e48cdae6f60 remi.vezy <VEZY@users.noreply.github.com> 1650547645 +0200	commit: Update figure_3_contrasted_systems.R
dc37dfdff99db0f713f0d511981d7e48cdae6f60 644145220ab305e5db76acd20b379ae9dcf9be32 remi.vezy <VEZY@users.noreply.github.com> 1650556328 +0200	commit: Update figure_1_self-intercrops_all.R
644145220ab305e5db76acd20b379ae9dcf9be32 c46bef6e54f3492f0cf89c725d20e6cca55ec260 remi.vezy <VEZY@users.noreply.github.com> 1650556350 +0200	commit: Update figure_3_contrasted_systems.R
c46bef6e54f3492f0cf89c725d20e6cca55ec260 bfb24c7ed762ff67f1c758e7733f8dfbdae34973 remi.vezy <VEZY@users.noreply.github.com> 1650645034 +0200	commit: clean up a little bit
bfb24c7ed762ff67f1c758e7733f8dfbdae34973 511345850f59be13396c51c9d9be21be5641b4f0 remi.vezy <VEZY@users.noreply.github.com> 1650645281 +0200	commit: Add Julia code for making the radiative transfer diagram
511345850f59be13396c51c9d9be21be5641b4f0 292fda24005a11cacf3a5badc9823b7ba599533b remi.vezy <VEZY@users.noreply.github.com> 1650650911 +0200	commit: Start implementing radiation transfer in Julia
292fda24005a11cacf3a5badc9823b7ba599533b 0433f0e92f7b3111e4bd6079210f296b313eeb0e remi.vezy <VEZY@users.noreply.github.com> 1650651714 +0200	commit: Finish implementation of radiation transfer (untested)
0433f0e92f7b3111e4bd6079210f296b313eeb0e 685c3718bf2fc11f7a91050a09249c49221b2b2f remi.vezy <VEZY@users.noreply.github.com> 1650665315 +0200	commit: Make the diagram: plants shapes + start of light
685c3718bf2fc11f7a91050a09249c49221b2b2f e6b0b5395ba422dd94c60ef0360fea2ca67b6890 remi.vezy <VEZY@users.noreply.github.com> 1650904934 +0200	commit: Update figure_0_radiative_transfer.jl
e6b0b5395ba422dd94c60ef0360fea2ca67b6890 cffdcb00f081029e0bb2a395110f972d04d15ad4 remi.vezy <VEZY@users.noreply.github.com> 1650908864 +0200	commit: Export some functions
cffdcb00f081029e0bb2a395110f972d04d15ad4 aa5523dd155e12319b954b62c6e0dd2a87debfe6 remi.vezy <VEZY@users.noreply.github.com> 1650911762 +0200	commit: Add more text
aa5523dd155e12319b954b62c6e0dd2a87debfe6 7704c6e8209d09e97333e00907f55f156f2eeed6 remi.vezy <VEZY@users.noreply.github.com> 1650912031 +0200	commit: Update figure_0_radiative_transfer.jl
7704c6e8209d09e97333e00907f55f156f2eeed6 8b706e02bd5fd8a64753f0bcceec7aad3b341262 remi.vezy <VEZY@users.noreply.github.com> 1650916795 +0200	commit: Update figure_0_radiative_transfer.jl
8b706e02bd5fd8a64753f0bcceec7aad3b341262 dd9284cd0058f7b5dc4d9270631a1e10f6fb5a66 remi.vezy <VEZY@users.noreply.github.com> 1650922149 +0200	commit: Add more text again: use labels
dd9284cd0058f7b5dc4d9270631a1e10f6fb5a66 57a1b29fa7425c8f5e88bb96ff06e702c2be00eb remi.vezy <VEZY@users.noreply.github.com> 1650981571 +0200	commit: Add Pluto notebook
57a1b29fa7425c8f5e88bb96ff06e702c2be00eb a626151df698532fb80061b767e50141993e95cd remi.vezy <VEZY@users.noreply.github.com> 1650990248 +0200	commit: Fix several things + parameters in dataFrame now
a626151df698532fb80061b767e50141993e95cd 811033387dce84ff7e3ff50cf04867dc923419aa remi.vezy <VEZY@users.noreply.github.com> 1650991593 +0200	commit: Fix shape in Notebook (combine does not work for Radio)
811033387dce84ff7e3ff50cf04867dc923419aa 880be60e37766acce36fa000ca05b144437c6ff4 remi.vezy <VEZY@users.noreply.github.com> 1650991660 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
880be60e37766acce36fa000ca05b144437c6ff4 767bbe63fdead715967306562254b5a9ae57c3ab remi.vezy <VEZY@users.noreply.github.com> 1651065269 +0200	commit: Fix how the theta are used
767bbe63fdead715967306562254b5a9ae57c3ab ec94736be0042e43a44b4dac152b1ca5c128ad95 remi.vezy <VEZY@users.noreply.github.com> 1651067793 +0200	commit: Update notebook accordingly
ec94736be0042e43a44b4dac152b1ca5c128ad95 9dc54e693f9ea9b964d0d6ac2c43d2d65b748b79 remi.vezy <VEZY@users.noreply.github.com> 1651073052 +0200	commit: Use plant shape for theta 1
9dc54e693f9ea9b964d0d6ac2c43d2d65b748b79 7f7e9e4e0ec23d5d8d11a18e750e15d72ee33737 remi.vezy <VEZY@users.noreply.github.com> 1651073930 +0200	commit: Fix error when the plant is completely shaded
7f7e9e4e0ec23d5d8d11a18e750e15d72ee33737 b186d6e5741d30858555e43e038a890db1e200f4 remi.vezy <VEZY@users.noreply.github.com> 1651133151 +0200	commit: Investigating how kdif works
b186d6e5741d30858555e43e038a890db1e200f4 d0140bf499b7275a97be6e736dbe247903036a43 remi.vezy <VEZY@users.noreply.github.com> 1651158548 +0200	commit: Finaaaaaally! I understood how kdif works
d0140bf499b7275a97be6e736dbe247903036a43 c47c89e7c72660fc495aa5819763902bb7d83844 remi.vezy <VEZY@users.noreply.github.com> 1651161982 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
c47c89e7c72660fc495aa5819763902bb7d83844 874b1de625c388a8e51c49cb2e653ae232f30aad remi.vezy <VEZY@users.noreply.github.com> 1651682935 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
874b1de625c388a8e51c49cb2e653ae232f30aad fc0d5630f599492317b7d874b01df9f8f9383e32 remi.vezy <VEZY@users.noreply.github.com> 1652273040 +0200	commit: Add calibration for mixed Wheat - Pea from Auzeville
fc0d5630f599492317b7d874b01df9f8f9383e32 b5a39a9bf8974f30dfc169fa5af62c219bdaef16 remi.vezy <VEZY@users.noreply.github.com> 1652273529 +0200	rebase (continue) (finish): refs/heads/master onto 032bdb42eaabb25931ee95c1badbaae418dfbdcb
b5a39a9bf8974f30dfc169fa5af62c219bdaef16 442ae691e5975a83d940245d5a8360930c5516e4 remi.vezy <VEZY@users.noreply.github.com> 1652286312 +0200	commit: Add figure 4
442ae691e5975a83d940245d5a8360930c5516e4 1263469818580bde162a024f5fb37aef26cc3674 remi.vezy <VEZY@users.noreply.github.com> 1652449124 +0200	commit: Update
1263469818580bde162a024f5fb37aef26cc3674 f1c9422c15dbe4037d4f3dbb315ca1a5a7878db9 remi.vezy <VEZY@users.noreply.github.com> 1652449157 +0200	commit: Use last version of stics-IC with corrections for radiative transfer
f1c9422c15dbe4037d4f3dbb315ca1a5a7878db9 6f94e25b4cbd735cd022750897faa6a8d6ca8bca remi.vezy <VEZY@users.noreply.github.com> 1652450489 +0200	commit: Updqte to v0.5.0
6f94e25b4cbd735cd022750897faa6a8d6ca8bca bcdbfe6507264046e9bd4d5016987377dcaa74fc remi.vezy <VEZY@users.noreply.github.com> 1652455182 +0200	commit: Clear-up the code
bcdbfe6507264046e9bd4d5016987377dcaa74fc 82ebfb5f6a0953a3f9879552c3096c8fd1f82736 remi.vezy <VEZY@users.noreply.github.com> 1652721357 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
82ebfb5f6a0953a3f9879552c3096c8fd1f82736 c0fab51a282dfc6fd11074808fd6baa0b0185cd2 remi.vezy <VEZY@users.noreply.github.com> 1652785011 +0200	commit: Use last version of the model
c0fab51a282dfc6fd11074808fd6baa0b0185cd2 edff7947c337b80c81135db3558240e03d258002 remi.vezy <VEZY@users.noreply.github.com> 1652785039 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
edff7947c337b80c81135db3558240e03d258002 6bb398a42090fab60e3875f7f84ee02dc2855629 remi.vezy <VEZY@users.noreply.github.com> 1652786527 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
6bb398a42090fab60e3875f7f84ee02dc2855629 2f8abf7e52a985756f405d29eb714bd20edbcefa remi.vezy <VEZY@users.noreply.github.com> 1652791294 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
2f8abf7e52a985756f405d29eb714bd20edbcefa c1a27291ddb17181275e9fa3ae2a85e9e4a1b8d4 remi.vezy <VEZY@users.noreply.github.com> 1652806492 +0200	commit: Create fig.0 from code
c1a27291ddb17181275e9fa3ae2a85e9e4a1b8d4 c5aa4e3e10604205f28a553ad5ac083921994871 remi.vezy <VEZY@users.noreply.github.com> 1652807326 +0200	commit: Fix transmitted light for rectangle and up triangle
c5aa4e3e10604205f28a553ad5ac083921994871 0e082e71e8956efbc22b542d18b80c8795626927 remi.vezy <VEZY@users.noreply.github.com> 1652809312 +0200	commit: Make some twicks
0e082e71e8956efbc22b542d18b80c8795626927 5f6c557b6149bfb879365b531316e185d215de46 remi.vezy <VEZY@users.noreply.github.com> 1652868946 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
5f6c557b6149bfb879365b531316e185d215de46 d6aebd90f8ea8afde5934c198214c90ccca1acde remi.vezy <VEZY@users.noreply.github.com> 1652868978 +0200	commit: Update figure_0_radiative_transfer.jl
d6aebd90f8ea8afde5934c198214c90ccca1acde 6359c37dce218a2f119a62c79fdf62ed10bfbc3c remi.vezy <VEZY@users.noreply.github.com> 1652870806 +0200	commit: Finish up Fig. 0
6359c37dce218a2f119a62c79fdf62ed10bfbc3c ed7120f9d2da5e3d76cbffcbce8c4a0efaffb99a remi.vezy <VEZY@users.noreply.github.com> 1652958020 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
ed7120f9d2da5e3d76cbffcbce8c4a0efaffb99a af4f6ae757463fbcb389b488fc977927856cf7af remi.vezy <VEZY@users.noreply.github.com> 1652977035 +0200	commit: Update figure 0, can now change rg lai and k
af4f6ae757463fbcb389b488fc977927856cf7af 5dc3b26445fdfa8349e67718c392dd1e1d84318c remi.vezy <VEZY@users.noreply.github.com> 1652978469 +0200	commit: Update figure_0_radiative_transfer_notebook.jl
5dc3b26445fdfa8349e67718c392dd1e1d84318c e232bf66daedde626b0614d65873dbff2110d058 remi.vezy <VEZY@users.noreply.github.com> 1652978687 +0200	commit: Updqte script to last version of notebook
e232bf66daedde626b0614d65873dbff2110d058 6a743bc1e0903742f921c4c01caa721b7d1d0f49 remi.vezy <VEZY@users.noreply.github.com> 1653397735 +0200	commit: Clean-up the repository
6a743bc1e0903742f921c4c01caa721b7d1d0f49 b981b87d4868c21324a854e9d4be567e855c89bb remi.vezy <VEZY@users.noreply.github.com> 1653398403 +0200	commit: Add README + github action to run the notebook for radiative transfer.
b981b87d4868c21324a854e9d4be567e855c89bb 66496e5d7fcef9b9f2797a1364e7bb96a795a658 remi.vezy <VEZY@users.noreply.github.com> 1657041464 +0200	commit: Update folllowing co-authors suggestions
66496e5d7fcef9b9f2797a1364e7bb96a795a658 c7837be76f4084a7c7cb10637166e9036fb5ed78 remi.vezy <VEZY@users.noreply.github.com> 1657103012 +0200	commit: Clean up data + update notebook
c7837be76f4084a7c7cb10637166e9036fb5ed78 10417b7d04b71acaca19318ad1b51c06f31a3dff remi.vezy <VEZY@users.noreply.github.com> 1657110064 +0200	commit: Add stics source code
10417b7d04b71acaca19318ad1b51c06f31a3dff a6ec3a984b22fa34a20876b378329bc1b8e6aab2 remi.vezy <VEZY@users.noreply.github.com> 1657110095 +0200	commit: Add optimized results
a6ec3a984b22fa34a20876b378329bc1b8e6aab2 50c3915cec78ebb5125026464da4123ec0f84d60 remi.vezy <VEZY@users.noreply.github.com> 1657110343 +0200	commit: Add outputs
50c3915cec78ebb5125026464da4123ec0f84d60 3d012c6345ed0d4211ddc4a32540d1a492ea5f07 remi.vezy <VEZY@users.noreply.github.com> 1657128290 +0200	commit: Update README.md
3d012c6345ed0d4211ddc4a32540d1a492ea5f07 0584c4f4543b92105a6fb655852c29750b72e3ed remi.vezy <VEZY@users.noreply.github.com> 1659621714 +0200	commit: Update names in figures
0584c4f4543b92105a6fb655852c29750b72e3ed 55eca10670efab2064fdb2f9d227bc19406a7646 remi.vezy <VEZY@users.noreply.github.com> 1660811927 +0200	commit: Create LICENSE
55eca10670efab2064fdb2f9d227bc19406a7646 a1bc0f04e0db303d9b83fbd5121d4fdce014b7bd remi.vezy <VEZY@users.noreply.github.com> 1660833638 +0200	commit: Add n to the plots and stats of Fig. 4 + 5
a1bc0f04e0db303d9b83fbd5121d4fdce014b7bd 84a18f126ad6ce043fbd8f4cb7b14858f83e9c5d remi.vezy <VEZY@users.noreply.github.com> 1660834840 +0200	commit: Update .gitignore
84a18f126ad6ce043fbd8f4cb7b14858f83e9c5d c2b2d30fca3474d03c2c0dfc7774cd5f3f71f089 remi.vezy <VEZY@users.noreply.github.com> 1660835529 +0200	commit: Add var.mod files
c2b2d30fca3474d03c2c0dfc7774cd5f3f71f089 569f35fb1524d057c4937e8f5ac6e3505e015f91 remi.vezy <VEZY@users.noreply.github.com> 1660836023 +0200	pull --ff --progress origin: Fast-forward
