! uberon definition changes
!
! Files used:
! file 1 (old): 27:09:2015 17:40, cvs revision unknown
! file 2 (new): 19:11:2015 21:01, cvs revision unknown

!
! Format of first line of each entry:
! Term ID : term name  ( total # annots / # direct annots)


UBERON:0000977 : pleura   
OLD: the serous membrane surrounding the lungs and lining the walls of the pleural cavity
NEW: The invaginated serous membrane that surrounds the lungs (the visceral portion) and lines the walls of the pleural cavity (parietal portion).


UBERON:0001074 : pericardial cavity   
OLD: Cavity of serous sac surrounded by serous pericardium.
NEW: A potential space between the visceral and parietal layers of the pericardium.


UBERON:0001221 : transversus abdominis muscle   
OLD: The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted].
NEW: The lateral abdominal wall muscle that is deep to the internal oblique.


UBERON:0001341 : lesser sac   
OLD: The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted].
NEW: The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). [WP,unvetted].


UBERON:0001891 : midbrain   
OLD: Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct[FMA]. The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally[ZFA]. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].
NEW: The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].


UBERON:0001894 : diencephalon   
OLD: Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis).
NEW: The division of the forebrain that develops from the foremost primary cerebral vesicle.


UBERON:0002097 : skin of body   
OLD: Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body.[FMA].
NEW: The organ covering the body that consists of the dermis and epidermis.


UBERON:0002224 : thoracic cavity   
OLD: Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA].
NEW: The part of the coelemic cavity lumen that is enclosed by the walls of the thorax.


UBERON:0002228 : rib   
OLD: An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body.
NEW: An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses.


UBERON:0002348 : epicardium   
OLD: a serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart.
NEW: a region of the serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart.


UBERON:0002357 : serous pericardium   
OLD: Serous membrane which is divided into parietal and visceral pericardium.
NEW: Serous membrane which is divided into parietal and visceral serous pericardium.


UBERON:0002400 : parietal pleura   
OLD: the part of the pleura external to the visceral pleura. It lines the inner surface of the chest wall, covers the diaphragm, and is reflected over the structures occupying the middle of the thorax.
NEW: The outer serous membrane of the pulmonary pleural.


UBERON:0002401 : visceral pleura   
OLD: Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung.[FMA]
NEW: The inner serous membrane of the pulmonary pleural. The visceral pleura lines the lungs.


UBERON:0002402 : pleural cavity   
OLD: Cavity of serous sac surropunded by the pleura.[FMA]
NEW: The fluid-filled cavity that lies between the visceral and parietal pleurae.


UBERON:0002408 : parietal serous pericardium   
OLD: Parietal serous membrane which is part of the serous membrane.
NEW: Parietal serous membrane which is part of the pericardium and forms the outer layer of the pericardial sac.


UBERON:0002463 : muscle of posterior compartment of hindlimb stylopod   
(was hamstring muscle)
OLD: In human anatomy, the hamstring refers to one of the three posterior thigh muscles, or to the tendons that make up the borders of the space behind the knee. In modern anatomical contexts, however, they usually refer to the posterior thigh muscles, or the tendons of the semitendinosus, the semimembranosus and the biceps femoris. In quadrupeds, it refers to the single large tendon found behind the knee or comparable area. [WP,unvetted].
NEW: Any of the posterior thigh muscles. [WP,modified].


UBERON:0003684 : abdominal cavity   
OLD: body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron).
NEW: The part of the ventral body cavity that is within the abdomen proper (excluding the pelvic cavity).


UBERON:0003728 : mediastinum   
OLD: A central thoracic cavity surrounded by loose connective tissue that contains (where present) the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest.
NEW: The central part of the thoracic cavity enclosed by the left and right pleurae.


UBERON:0003829 : urethra muscle tissue   
(was urethra muscle)
OLD: A muscle structure that is part of a urethra [Automatically generated definition].
NEW: Any muscle tissue that is part of the urethra.


UBERON:0004160 : proepicardium   
OLD: An outpouching of the septum transversum[GO]. An embryonic group of progenitor cells that forms near the venous pole of the heart and gives rise to the epicardium[Wiktionary]
NEW: An embryonic group of progenitor cells that forms from an outpouching of the septum transversum near the venous pole of the heart and gives rise to the epicardium


UBERON:0005442 : abdominal external oblique muscle   
OLD: The external oblique muscle (of the abdomen) (also external abdominal oblique muscle) is the largest and the most superficial (outermost) of the three flat muscles of the lateral anterior abdomen.
NEW: The lateral abdominal wall muscle that is the most superficial, immediately superficial to the internal oblique.


UBERON:0005454 : abdominal internal oblique muscle   
OLD: The internal oblique muscle (of the abdomen) is the intermediate muscle of the abdomen, lying just underneath the external oblique and just above (superficial to) the transverse abdominal muscle.
NEW: The lateral abdominal wall muscle that is deep to the external oblique and superficial to the transversus.


UBERON:0005626 : ventral mesogastrium   
OLD: Ventral mesentery is the part of the peritoneum closest to the navel.
NEW: Portion of ventral mesentery closest to the stomach.


UBERON:0006222 : future diencephalon   
OLD: A multi-tissue structure that has the potential to develop into a diencephalon.
NEW: The foremost region of the future forebrain that develops into the diencephalon.


UBERON:0006906 : ala of nose   
OLD: The lateral surface of the external nose ends below in a rounded eminence, the wing of the nose. It is elevated by the Levator labii superioris alaeque nasi muscle[WP]. the tissue comprising the lateral boundary of the nose, inferiorly, surrounding the naris[EoM].
NEW: The lateral surface parts of the external nose, inferiorly, surrounding the naris[EoM].


UBERON:0007719 : bone of reproductive organ   
(was bone of reproductive structure)
OLD: A bone that is part of a reproductive structure.
NEW: A bone that is part of a reproductive organ.


UBERON:0007794 : serous fluid   
OLD: Transudate contained in a serous sac.
NEW: Any fluid produced by a serous gland.


UBERON:0007826 : peritoneal mesentery   
OLD: A double layer composed of peritoneum that attaches the visceral organs to the body wall.
NEW: Mesentery that is located in the peritoneum.


UBERON:0008203 : pelvic cavity   
OLD: The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded 'house'. It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness.
NEW: The part of the ventral body cavity that is within the pelvis.


UBERON:0008446 : flexor pollicis longus muscle   
OLD: A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. This muscle is unique to humans, being 'either rudimentary or absent' in other primates.
NEW: A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus.


UBERON:0009025 : gastroepiploic artery   
OLD: Abdominal artery that follows the curvature of the stomach. The right gasteroepiploic artery is frequently used in coronary artery bypass grafting, myocardial revascularization, and other vascular reconstruction.
NEW: One of two (right and left) arteries along the greater curvature of the stomach that supply blood to the greater omentum and stomach.


UBERON:0009778 : pleural sac   
OLD: Serous sac, which has as parts the pleura and the pleural cavity. Examples: There are only two canonical instances, right and left pleural sacs.
NEW: A serous sac that has the pleura and the pleural cavity as parts.


UBERON:0011997 : coelom   
OLD: The structure that contains the coelemic cavity.
NEW: The aggregate of the coelemic cavity lumen plus the membranes that line the lumen.


UBERON:0013411 : cranial cavity   
OLD: The cranial cavity, or intracranial space, is the space formed inside the skull. The brain occupies the cranial cavity, which is lined by the meninges and which contains cerebrospinal fluid to cushion blows. Eight fused cranial bones together form the cranial cavity: the frontal, occipital, sphenoid and ethmoid bones, and two each of the parietal and temporal bones. The capacity of an adult human cranial cavity is 1,200-1,700 cm.
NEW: Anatomical cavity that is the lumen of the skull and contains the brain.


UBERON:0014765 : crus of diaphragm   
OLD: The crura of the diaphragm are tendinous structures that extend inferiorly from the diaphragm to attach to the vertebral column.
NEW: The domain of the diaphragm that is located dorsally and attaches to the vertebrae and surrounds the esophagus and aorta.


UBERON:0015129 : epicardial fat   
OLD: A adipose tissue that is part of a epicardium.
NEW: Visceral intrapericardial fat contiguous with the myocardial surface.


UBERON:0016886 : muscle tissue of terminal part of digestive tract   
(was muscle of terminal part of digestive tract)
OLD: Any muscle structure of the distalmost portion of the digestive tract.
NEW: Any muscle tissue of the distalmost portion of the digestive tract.


UBERON:0018374 : sallet   
OLD: A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008; see also http://books.google.com/books?id=oZaaal687X8C&pg=PA227&lpg=PA227&dq=sallet+inner+ear&source=bl&ots=Y7e2_zTIoi&sig=dFLn4yvWwdEV55_uMYkzGMrTGY8&hl=en&sa=X&ei=S_aVU9HvDKWysATtx4G4DA&ved=0CHUQ6AEwDQ#v=onepage&q=sallet&f=false
NEW: A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 


UBERON:0023869 : obsolete body membrane   
(was body membrane)
OLD: Part of body that takes the form of a thin sheet of cells or fibrous material, e.g., the meningeal coverings of the brain.
NEW: Part of body that takes the form of a thin sheet of cells or fibrous material, e.g., the meningeal coverings of the brain[NIFSTD].


UBERON:2000223 : infraorbital 1   
OLD: Infraorbital that is the first (anteriormost) bone of the infraorbital series.
NEW: Infraorbital in fishes that is the first (anteriormost) bone of the infraorbital series.


UBERON:3010146 : lacrimal   
OLD: Investing bone associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal.
NEW: Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal.



uberon
Ontology Comparison Report
==========================

Files used:
- file 1 (old): uberon-lastbuild.obo; data version: releases/2015-09-27; date: 27:09:2015 17:40
- file 2 (new): uberon.obo; data version: releases/2015-11-19; date: 19:11:2015 21:01

NEW TERMS
=========

ID	name	namespace
UBERON:0035804	future mouth	
UBERON:0035805	muscle layer of sigmoid colon	
UBERON:0035806	Hensen stripe	
UBERON:0035807	area X of basal ganglion	
UBERON:0035808	robust nucleus of arcopallium	
UBERON:0035809	serous cavity	
UBERON:0035814	pericardial fat	
UBERON:0035815	paracardial fat	
UBERON:0035818	visceral fat	
UBERON:0035819	abdominopelvic cavity	
UBERON:0035820	peritoneal sac	
UBERON:0035825	left adrenal gland cortex	
UBERON:0035826	left adrenal gland medulla	
UBERON:0035827	right adrenal gland cortex	
UBERON:0035828	right adrenal gland medulla	
UBERON:0035829	right gastroepiploic artery	
UBERON:0035830	left gastroepiploic artery	
UBERON:0035831	costal diaphragm	
UBERON:0035832	caval sphincter	
UBERON:0035833	lower esophagus muscularis layer	
UBERON:0035834	lower esophagus mucosa	
UBERON:0035835	apical region of left ventricle	
UBERON:0035836	apical region of right ventricle	
UBERON:0035837	apical region of heart ventricle	
UBERON:4300150	gill membrane	
UBERON:4300151	pelvic intercleithral cartilage	
UBERON:4300152	accessory nasal sac	
UBERON:4300153	Sharpey's fiber	
UBERON:4300154	procurrent spur	
UBERON:4300155	pectoral splint	


OBSOLETIONS
===========
UBERON:0004457, obsolete cavity lining
UBERON:0004458, obsolete body cavity or lining
UBERON:0023869, obsolete body membrane


TERM MERGES
===========
UBERON:0008538, muscle of posterior compartment of thigh was merged into UBERON:0002463, muscle of posterior compartment of hindlimb stylopod


TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	alt_id	def	comment	subset	synonym	xref	is_a	intersection_of	union_of	relationship	is_obsolete	replaced_by	consider	
UBERON:0000042								1 D, 1 A							
UBERON:0000053							1 A								
UBERON:0000106							1 A								
UBERON:0000165								1 D, 1 A			1 D, 1 A				
UBERON:0000166								1 D							
UBERON:0000170											2 D, 2 A				
UBERON:0000378								1 D							
UBERON:0000412							1 A								
UBERON:0000456							1 A								
UBERON:0000925						1 D, 1 A									
UBERON:0000930											1 D, 1 A				
UBERON:0000977			C			1 D, 1 A			2 A		1 D, 3 A				
UBERON:0000997							1 A								
UBERON:0001019							1 A								
UBERON:0001065							1 A								
UBERON:0001074			C					1 A	3 D, 2 A		2 A				
UBERON:0001075							1 A								
UBERON:0001088							1 A								
UBERON:0001103				D				2 D, 1 A							
UBERON:0001178						1 A		1 D, 1 A	2 A						
UBERON:0001179							3 D, 1 A	1 D, 1 A	1 D, 1 A		1 D, 2 A				
UBERON:0001180								1 D, 1 A							
UBERON:0001181								1 D, 1 A							
UBERON:0001201								1 D							
UBERON:0001212							1 A								
UBERON:0001221			C						3 A		1 D, 2 A				
UBERON:0001283							1 A								
UBERON:0001323							1 A								
UBERON:0001341			C					1 D, 1 A			1 D, 1 A				
UBERON:0001366						1 D, 2 A	2 D, 1 A	1 D, 1 A	2 A						
UBERON:0001374											1 D				
UBERON:0001375											1 D				
UBERON:0001381											1 D				
UBERON:0001479							1 A								
UBERON:0001565							1 A								
UBERON:0001576								1 D, 1 A							
UBERON:0001581								1 D							
UBERON:0001610								1 D							
UBERON:0001611								1 D, 1 A							
UBERON:0001617								1 D, 1 A							
UBERON:0001625							1 A								
UBERON:0001626							1 A								
UBERON:0001628								5 A							
UBERON:0001655								1 D, 1 A							
UBERON:0001672							1 A								
UBERON:0001682							1 A								
UBERON:0001710								1 D							
UBERON:0001723								1 D							
UBERON:0001726								1 D							
UBERON:0001788							1 A								
UBERON:0001794							1 A								
UBERON:0001800							1 A								
UBERON:0001801							1 A								
UBERON:0001802							1 A								
UBERON:0001827							1 A								
UBERON:0001833								1 D							
UBERON:0001836							1 A								
UBERON:0001837								1 D							
UBERON:0001838							1 A								
UBERON:0001839							1 A								
UBERON:0001845							1 A								
UBERON:0001852							1 A								
UBERON:0001891			C												
UBERON:0001894			C												
UBERON:0001912							1 A								
UBERON:0001913							1 A								
UBERON:0001999											1 D, 1 A				
UBERON:0002001								1 A							
UBERON:0002002											1 D, 1 A				
UBERON:0002030							1 A								
UBERON:0002074							1 A								
UBERON:0002075							1 A								
UBERON:0002097			C												
UBERON:0002138							1 A								
UBERON:0002141						3 D, 4 A					1 D, 1 A				
UBERON:0002160							1 A								
UBERON:0002175							1 A								
UBERON:0002181							1 A								
UBERON:0002213							1 A								
UBERON:0002224			C			1 D, 2 A	1 A		3 A		1 D, 2 A				
UBERON:0002227						2 A									
UBERON:0002228			C					1 D							
UBERON:0002233															
UBERON:0002259							1 A								
UBERON:0002293							1 A								
UBERON:0002306							1 A								
UBERON:0002323						2 D, 3 A	1 D	1 D			1 D, 2 A				
UBERON:0002348			C			2 D, 1 A		2 D, 2 A							
UBERON:0002356							1 A								
UBERON:0002357			C												
UBERON:0002358							1 A		2 A		1 D, 1 A				
UBERON:0002359											1 A				
UBERON:0002379							1 A								
UBERON:0002400			C	A				2 D, 2 A	3 A		1 A				
UBERON:0002401			C	D		1 D, 2 A	1 D	2 D, 2 A	3 A		1 A				
UBERON:0002402			C			1 D, 3 A		1 D, 1 A	2 D, 2 A		1 D, 3 A				
UBERON:0002406															
UBERON:0002407								2 D, 1 A							
UBERON:0002408			C			1 A									
UBERON:0002424								1 D							
UBERON:0002425						1 D, 1 A					1 A				
UBERON:0002438									2 D		1 D, 1 A				
UBERON:0002461						1 A					1 A				
UBERON:0002463	C	1 A	C			3 D, 6 A	2 A	1 D, 1 A			1 A				
UBERON:0002475							1 A								
UBERON:0002485							1 A								
UBERON:0002499							1 A								
UBERON:0002500							1 A								
UBERON:0002514							1 A								
UBERON:0002524								1 D							
UBERON:0002553							1 A								
UBERON:0002707							1 A								
UBERON:0002899							1 A								
UBERON:0003214							1 A								
UBERON:0003236								1 D							
UBERON:0003281								1 D							
UBERON:0003282								1 D							
UBERON:0003324								1 D							
UBERON:0003357								1 D							
UBERON:0003416								1 D							
UBERON:0003420								1 D							
UBERON:0003427							1 A								
UBERON:0003452							1 A								
UBERON:0003463							1 A								
UBERON:0003488							1 A								
UBERON:0003496							1 A								
UBERON:0003500							1 A								
UBERON:0003501							1 A								
UBERON:0003503							1 A								
UBERON:0003514							1 A								
UBERON:0003534							1 A								
UBERON:0003540							1 A								
UBERON:0003541							1 A								
UBERON:0003542							1 A								
UBERON:0003543							1 A								
UBERON:0003585							1 A								
UBERON:0003656							1 A								
UBERON:0003657							1 A								
UBERON:0003679								1 D							
UBERON:0003684			C				1 A	1 D, 1 A	3 A		1 D, 3 A				
UBERON:0003728			C					1 D, 1 A			2 A				
UBERON:0003729								1 D							
UBERON:0003829	C		C			2 D									
UBERON:0003886	C					1 A					2 A				
UBERON:0003887			C					1 D, 2 A			1 A				
UBERON:0003888	C					1 A		1 D, 1 A			1 A				
UBERON:0003911							1 A								
UBERON:0004019							1 A								
UBERON:0004160			C												
UBERON:0004219						4 D	1 A								
UBERON:0004271								2 D, 1 A							
UBERON:0004365							1 A								
UBERON:0004457	C						1 D	2 D				A	1 A		
UBERON:0004458	C						2 D	1 D		2 D		A	1 A		
UBERON:0004486							1 A								
UBERON:0004538							1 A								
UBERON:0004539							1 A								
UBERON:0004657							1 A								
UBERON:0004691							1 A								
UBERON:0004693							1 A								
UBERON:0004695							1 A								
UBERON:0004696							1 A								
UBERON:0004747							1 A								
UBERON:0004775							1 A								
UBERON:0004776							1 A								
UBERON:0004786							1 A								
UBERON:0004796							1 A								
UBERON:0004809								1 D							
UBERON:0004810							1 A								
UBERON:0004817							1 A								
UBERON:0004829	C					1 A									
UBERON:0004831							1 A								
UBERON:0004833								1 D							
UBERON:0004867									1 D, 1 A		1 D, 1 A				
UBERON:0005086							1 A								
UBERON:0005200							1 A								
UBERON:0005203							1 A								
UBERON:0005206							1 A								
UBERON:0005248							1 A								
UBERON:0005250															
UBERON:0005272							1 A								
UBERON:0005334								1 D							
UBERON:0005382							1 A								
UBERON:0005402								1 D							
UBERON:0005403							1 A								
UBERON:0005406							1 A								
UBERON:0005432							1 A								
UBERON:0005442			C						3 A		1 D, 3 A				
UBERON:0005449							1 A	1 D			1 D, 1 A				
UBERON:0005450							1 D								
UBERON:0005454			C						4 A		3 A				
UBERON:0005462							1 A								
UBERON:0005626			C			1 D, 1 A	1 D				1 D				
UBERON:0005658								1 A							
UBERON:0005659								1 A							
UBERON:0005669						2 A									
UBERON:0005890								1 D							
UBERON:0005891								1 D							
UBERON:0005905								1 D							
UBERON:0005906							2 A								
UBERON:0005981								1 D, 1 A							
UBERON:0006007							1 A								
UBERON:0006086							1 A								
UBERON:0006101											1 D, 1 A				
UBERON:0006222			C												
UBERON:0006260								1 D							
UBERON:0006288								1 D							
UBERON:0006289								1 D							
UBERON:0006347								1 A							
UBERON:0006360								1 D							
UBERON:0006508								1 D, 1 A			1 D, 1 A				
UBERON:0006530							1 A								
UBERON:0006536							1 A								
UBERON:0006538							1 A								
UBERON:0006539							1 A								
UBERON:0006586							1 A								
UBERON:0006606								1 D							
UBERON:0006669								1 D							
UBERON:0006688								1 D							
UBERON:0006699								1 D							
UBERON:0006721							1 A								
UBERON:0006764								1 A							
UBERON:0006845								1 D, 1 A			1 D				
UBERON:0006861				D			1 D								
UBERON:0006905								1 D							
UBERON:0006906			C												
UBERON:0006913								1 D							
UBERON:0007181								1 D							
UBERON:0007250								1 D							
UBERON:0007311							1 A								
UBERON:0007610							1 A								
UBERON:0007617									1 D, 1 A		1 D, 1 A				
UBERON:0007719	C		C						1 D, 1 A		1 D, 1 A				
UBERON:0007721											1 D, 1 A				
UBERON:0007794			C			1 A	1 A	1 D, 2 A	1 D, 2 A		1 A				
UBERON:0007826			C					1 A							
UBERON:0007993							1 A								
UBERON:0008199								1 D							
UBERON:0008203			C						1 A		1 D, 2 A				
UBERON:0008253								1 D							
UBERON:0008287											1 D, 1 A				
UBERON:0008428								1 D							
UBERON:0008446			C								1 A				
UBERON:0008464								1 D, 1 A							
UBERON:0008465								1 A							
UBERON:0008596								1 D							
UBERON:0008824							1 A								
UBERON:0008826							1 A								
UBERON:0008828							1 A								
UBERON:0009025			C				1 A	1 A			3 A				
UBERON:0009116								2 D, 1 A			1 D, 2 A				
UBERON:0009471								1 D							
UBERON:0009522								1 D							
UBERON:0009538								1 D							
UBERON:0009654								1 D, 1 A							
UBERON:0009658							1 A								
UBERON:0009668			A				1 A								
UBERON:0009778			C		1 A		1 A		3 A		2 A				
UBERON:0009848							1 A								
UBERON:0010013								1 D							
UBERON:0010032								1 D							
UBERON:0010033								1 D							
UBERON:0010034								1 D							
UBERON:0010047								1 D							
UBERON:0010056								1 D							
UBERON:0010057								1 D							
UBERON:0010059								1 D							
UBERON:0010084								2 D	1 D, 1 A		2 A				
UBERON:0010166							1 A								
UBERON:0010260							1 A								
UBERON:0010337								1 D, 1 A							
UBERON:0010358							1 A								
UBERON:0010389							1 A								
UBERON:0010509							1 A								
UBERON:0010510							1 A								
UBERON:0010511							1 A								
UBERON:0010512							1 A								
UBERON:0010513							1 A								
UBERON:0011011						1 D, 1 A		1 D, 2 A							
UBERON:0011012								1 D, 1 A							
UBERON:0011022								1 D							
UBERON:0011268								1 D							
UBERON:0011303								1 D							
UBERON:0011349								1 D							
UBERON:0011534								1 A							
UBERON:0011535								1 D							
UBERON:0011595								1 D							
UBERON:0011642								1 A							
UBERON:0011799									1 D, 1 A		1 D, 1 A				
UBERON:0011805									1 D, 1 A		1 D, 1 A				
UBERON:0011850								1 D							
UBERON:0011876								1 D							
UBERON:0011932							1 A								
UBERON:0011938							1 A								
UBERON:0011939							1 A								
UBERON:0011967								1 D							
UBERON:0011997			C			3 A		1 D			1 D				
UBERON:0012054									2 A		1 D, 1 A				
UBERON:0012105								1 D							
UBERON:0012106								1 D, 1 A							
UBERON:0012128						1 A									
UBERON:0012132											1 D, 1 A				
UBERON:0012336											1 A				
UBERON:0012376								1 D							
UBERON:0012621								1 D							
UBERON:0013074									1 D, 1 A		1 D, 1 A				
UBERON:0013411			C												
UBERON:0013476								1 D							
UBERON:0013526									1 D, 1 A		1 D, 1 A				
UBERON:0013540											1 A				
UBERON:0013656								1 D							
UBERON:0013734								1 D, 2 A							
UBERON:0013737								1 D, 2 A							
UBERON:0013738								1 D, 2 A							
UBERON:0013749								1 A	1 D, 1 A		1 D, 1 A				
UBERON:0013768							1 A								
UBERON:0013778									1 D, 1 A		1 D				
UBERON:0014375								1 A							
UBERON:0014378								1 A							
UBERON:0014451								1 D							
UBERON:0014453								1 D, 1 A							
UBERON:0014478								1 A			1 A				
UBERON:0014549							1 A								
UBERON:0014645								1 D, 2 A							
UBERON:0014646								1 D, 2 A							
UBERON:0014705								1 D							
UBERON:0014765			C	A		1 A	1 A	1 D, 1 A			2 A				
UBERON:0014790								1 D							
UBERON:0015019								1 A							
UBERON:0015129			C			2 A	1 A	1 D, 1 A	1 D, 3 A		1 D, 3 A				
UBERON:0015171							1 A								
UBERON:0015430							1 A								
UBERON:0015716							1 A								
UBERON:0015766								1 A							
UBERON:0015855							1 A								
UBERON:0016411											1 D, 1 A				
UBERON:0016513								1 D, 1 A	1 D, 1 A		1 D, 1 A				
UBERON:0016514								1 D, 1 A	1 D, 1 A		1 D, 1 A				
UBERON:0016522								1 D, 1 A	1 D, 1 A		1 D, 1 A				
UBERON:0016621								1 D							
UBERON:0016622								1 D							
UBERON:0016624								1 D							
UBERON:0016886	C		C					1 D, 1 A	1 D, 1 A						
UBERON:0018112								1 A							
UBERON:0018149								1 D							
UBERON:0018374			C					1 D, 3 A			1 A				
UBERON:0019324							1 A								
UBERON:0019325							1 A								
UBERON:0022283							1 A								
UBERON:0022351						1 A	1 A								
UBERON:0023869	C		C	C		1 D	1 D	1 D				A		2 A	
UBERON:0034696								1 D, 1 A							
UBERON:0034719								1 D							
UBERON:0034946				A		2 A									
UBERON:0034995								1 D							
UBERON:0035032			A								1 A				
UBERON:0035037								1 D							
UBERON:0035112								1 D, 1 A							
UBERON:0035149								1 D							
UBERON:0035648							1 A								
UBERON:0035652							1 A								
UBERON:1000000								1 D							
UBERON:1000011								1 D							
UBERON:2000089				C											
UBERON:2000216								3 D, 1 A							
UBERON:2000223			C												
UBERON:2000226						3 D, 3 A									
UBERON:2000230								1 D, 1 A							
UBERON:2000286	C							3 D, 1 A							
UBERON:2000288								3 D, 1 A							
UBERON:2000349								3 D, 1 A							
UBERON:2000350						3 D, 3 A									
UBERON:2000356						1 D, 1 A									
UBERON:2000362								3 D, 1 A							
UBERON:2000410						2 D, 2 A									
UBERON:2000439								1 A							
UBERON:2000476											1 A				
UBERON:2000492								1 D, 1 A							
UBERON:2000499								1 A							
UBERON:2000526						2 D, 2 A									
UBERON:2000528								1 D, 1 A							
UBERON:2000564								1 A							
UBERON:2000594						1 D, 1 A									
UBERON:2000614								1 A							
UBERON:2000651								1 A							
UBERON:2000660						3 D, 3 A									
UBERON:2000685								1 A							
UBERON:2000701								1 A							
UBERON:2000704								1 A							
UBERON:2000902								1 D, 1 A							
UBERON:2001058						2 D, 2 A									
UBERON:2001162						2 D, 2 A									
UBERON:2001364						2 D, 2 A									
UBERON:2001798						1 D, 1 A									
UBERON:2002044						1 D, 1 A									
UBERON:2002051	C					1 D, 1 A									
UBERON:2002108								1 D							
UBERON:2002147								1 D, 1 A							
UBERON:2002276						1 D, 1 A									
UBERON:2007008								1 D, 1 A							
UBERON:2007048								1 D, 1 A							
UBERON:3010091								1 D							
UBERON:3010144								1 D							
UBERON:3010146			C												
UBERON:3010815								1 D, 1 A							
UBERON:4000162						1 D, 1 A									
UBERON:4000163						2 D, 2 A									
UBERON:4000164						2 D, 2 A									
UBERON:4200031								1 D, 1 A							
UBERON:4200203	C														
UBERON:4200218								1 D, 1 A							
UBERON:4300030								1 D, 1 A							
UBERON:4300137								1 D							
UBERON:4300138								1 D							
UBERON:4300139								1 D							
UBERON:4400007			C	C											



OTHER STANZA TYPES
==================

Stanzas Edited
==============

Stanza type	ID	Name
Typedef	example_of_usage	example of usage



FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
none	268	268	
	(213 defined)	(213 defined)	
uberon	10777	10803	+26
	(9072 defined)	(9096 defined)	
uberon/phenoscape-anatomy	2241	2241	
	(1568 defined)	(1568 defined)	

Obsolete	1008	1011	+3
	(7.1% of total)	 (7.1% of total)	(+0.3%)

Totals	13286	13312	+29 (+0.2%)
	10853 (81.7%) defined	10877 (81.7%) defined	
	14294 inc. obs	14323 inc. obs



