Package: ggtranscript
Title: Visualizing transcript structure and annotation using ggplot2
Version: 0.99.3
Date: 2021-12-23
Authors@R:
    c(
    person("David", "Zhang", , "dyzhang32@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2382-8460")), 
    person("Emil", "Gustavsson", , "e.gustavsson@ucl.ac.uk", role = c("aut"),
           comment = c(ORCID = "0000-0003-0541-7537")),
    person("Regina", "Reynolds", , "regina.reynolds.16@ucl.ac.uk", 
           role = c("ctb"), comment = c(ORCID = "0000-0001-6470-7919")), 
    person("Sonia", "Ruiz", , "s.ruiz@ucl.ac.uk", 
           role = c("ctb"))
    )
Description: The goal of ggtranscript is the simplify the process of visualizing 
    transcript structure and annotation. To achieve this, ggtranscript 
    introduces 5 new geoms (geom_range(), geom_half_range(), geom_intron(), 
    geom_junction() and geom_junction_label_repel()) as well as several helper 
    functions. As a ggplot2 extension, ggtranscript inherits ggplot2's 
    familiarity and flexibility, enabling users to intuitively adjust 
    aesthetics, parameters, scales etc as well as complement ggtranscript geoms
    with existing ggplot2 geoms to create informative, publication-ready plots.
License: MIT + file LICENSE
URL: https://github.com/dzhang32/ggtranscript
BugReports: https://github.com/dzhang32/ggtranscript/issues
biocViews: Software, Visualization, Annotation, Transcriptomics, 
    GenomeAnnotation, AlternativeSplicing
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Suggests: 
    BiocStyle,
    covr,
    ggpubr,
    knitr,
    rmarkdown,
    sessioninfo,
    testthat (>= 3.0.0),
    vdiffr
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: 
    R (>= 2.10)
LazyData: true
Imports: 
    dplyr,
    GenomicRanges,
    ggplot2,
    magrittr,
    rlang,
    S4Vectors,
    GenomeInfoDb,
    ggrepel
Collate: 
    'add_exon_number.R'
    'add_utr.R'
    'data.R'
    'geom_range.R'
    'geom_half_range.R'
    'geom_intron.R'
    'geom_junction.R'
    'geom_junction_label_repel.R'
    'ggtranscript-package.R'
    'globals.R'
    'shorten_gaps.R'
    'to_diff.R'
    'to_intron.R'
    'utils.R'
