Find simulation tools

@BioSimulators

Find simulations

@BioSimulations

Run simulations

@runBioSimulations

Viz simulation results

@runBioSimulations

Combine simulations

@Vivarium

BioSimulations is a free platform for sharing and re-using biomodels, simulations, simulation results, and visualizations of simulation results. BioSimulations supports a wide range of frameworks (e.g., logical, Flux-Balance Analysis (FBA), continuous kinetic, discrete kinetic), simulation algorithms (e.g., FBA, SSA), model formats (e.g., SBML), and tools (e.g., COBRApy, COPASI, tellurium).

Helping authors, reviewers, and investigators share and reuse biomodeling projects

BioSimulations provides investigators a central portal for finding models and simulations, interactively visualizing their results, and modifying and re-running simulations.

Authors can easily publish models, simulations, simulation results, and visualizations of simulation results to a central repository where other investigators can easily find, export, and edit, and re-run them.

Reviewers can easily evaluate models and simulations. For example, reviewers can verify the reproducibility of reported results, evaluate alternative predictions, and test models under alternate conditions.

Central access to multiple modeling frameworks, algorithms, formats & tools

About BioSimulations

BioSimulations was developed by the Center for Reproducible Biomedical Modeling , the Karr Lab at the Icahn School of Medicine at Mount Sinai , and the Center for Cell Analysis & Modeling at the University of Connecticut Health Center at the University of Connecticut Health Center with support from the National Institutes of Health and the National Science Foundation.

BioSimulations is implemented using several open-source tools and cloud platforms. The models, simulations, and visualizations are available under the licenses specified for each resource. The code is openly available under the MIT license .

Please see the documentation for more information.