OMP_NUM_THREADS=6
iqtree2 -nt 6 -s infile.txt -spp partition.txt -ninit 2 -bb 1000 -safe -bnni -alrt 1000 -st DNA -pre output -m TESTNEWMERGE
IQ-TREE multicore version 2.0.5 for Linux 64-bit built May 15 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    comet-08-14.sdsc.edu (AVX2, FMA3, 125 GB RAM)
Command: iqtree2 -nt 6 -s infile.txt -spp partition.txt -ninit 2 -bb 1000 -safe -bnni -alrt 1000 -st DNA -pre output -m TESTNEWMERGE
Seed:    260198 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Tue Jun 23 09:38:00 2020
Kernel:  Safe AVX+FMA - 6 threads (6 CPU cores detected)

Reading partition model file partition.txt ...
Reading alignment file infile.txt ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
WARNING: 21 sites contain only gaps or ambiguous characters.
Alignment has 463 sequences with 6404 columns, 5098 distinct patterns
2538 parsimony-informative, 438 singleton sites, 3428 constant sites
                Gap/Ambiguity  Composition  p-value
   1  ACTAG4852        73.41%    passed     38.44%
   2  AM_93_0448       70.36%    passed     83.54%
   3  AM_GB_001        70.39%    passed     29.32%
   4  AM_GB_003        70.41%    passed     89.70%
   5  AM_GB_005        70.19%    passed     52.02%
   6  AM_GB_007        80.65%    failed      0.00%
   7  AM_GB_010        70.22%    passed     23.89%
   8  AM_GB_011        70.17%    passed     46.86%
   9  AM_GB_012        80.65%    failed      0.00%
  10  AM_GB_013        70.27%    passed     79.08%
  11  AM_GB_016        70.17%    passed     31.98%
  12  AM_GB_018        70.36%    passed     83.10%
  13  AM_GB_021        80.64%    failed      0.00%
  14  AM_GB_025        80.65%    failed      0.00%
  15  AM_GB_026        80.73%    failed      0.00%
  16  AM_GB_028        80.65%    failed      0.00%
  17  AM_GB_029        80.64%    failed      0.00%
  18  AM_GB_030        80.64%    failed      0.00%
  19  AM_GB_032        80.68%    failed      0.00%
  20  AM_GB_035        80.65%    failed      0.00%
  21  AM_GB_041        80.67%    failed      0.00%
  22  AM_GB_042        80.70%    failed      0.00%
  23  AM_GB_043        70.21%    passed     76.41%
  24  AM_GB_044        80.64%    failed      0.00%
  25  AM_GB_045        70.17%    passed     80.47%
  26  AM_GB_046        80.68%    failed      0.00%
  27  AM_GB_048        80.64%    failed      0.00%
  28  AM_GB_049        80.65%    failed      0.00%
  29  AM_GB_050        70.21%    passed     80.10%
  30  AM_GB_051        80.67%    failed      0.00%
  31  AM_GB_053        80.72%    failed      0.00%
  32  AM_GB_054        80.64%    failed      0.00%
  33  AM_GB_055        80.67%    failed      0.00%
  34  AM_GB_057        71.02%    passed     17.11%
  35  AM_GB_060        70.17%    passed     31.50%
  36  AM_GB_081        70.22%    passed     76.74%
  37  AM_GB_084        70.19%    passed     59.85%
  38  AM_GB_085        70.19%    passed     74.30%
  39  AM_GB_095        70.21%    passed     49.69%
  40  AM_GB_097        70.17%    passed     79.16%
  41  AM_GB_098        70.25%    passed     98.01%
  42  AM_GB_099        80.67%    failed      0.00%
  43  AM_GB_100        70.39%    passed     20.67%
  44  AM_GB_102        80.64%    failed      0.00%
  45  AM_GB_107        70.19%    passed     98.40%
  46  AM_GB_108        80.68%    failed      0.00%
  47  AM_GB_109        80.67%    failed      0.00%
  48  AM_GB_111        70.19%    passed     68.73%
  49  AM_GB_117        70.19%    passed     38.10%
  50  AM_GB_119        80.65%    failed      0.00%
  51  AM_GB_122        80.68%    failed      0.00%
  52  AM_GB_131        80.67%    failed      0.00%
  53  AM_GB_132        80.67%    failed      0.00%
  54  AM_GB_134        80.64%    failed      0.00%
  55  AM_GB_138        80.64%    failed      0.00%
  56  AM_GB_139        80.68%    failed      0.00%
  57  AM_GB_140        70.17%    passed     68.43%
  58  AM_GB_144        80.65%    failed      0.00%
  59  AM_GB_151        70.17%    passed     34.53%
  60  AM_GB_167        80.70%    failed      0.00%
  61  AM_GB_169        80.64%    failed      0.00%
  62  AM_GB_189        80.64%    failed      0.00%
  63  AM_GB_193        80.67%    failed      0.00%
  64  AM_GB_196        80.75%    failed      0.00%
  65  AM_GB_198        80.64%    failed      0.00%
  66  AM_GB_199        80.68%    failed      0.00%
  67  AMFRG4292        77.42%    passed     21.37%
  68  APFRG4284        80.92%    failed      0.27%
  69  ARFRG4295        80.87%    failed      0.48%
  70  ARFRG4296        83.03%    failed      4.39%
  71  AZ003            60.43%    failed      0.01%
  72  AZ004            62.76%    failed      0.06%
  73  AZ006            49.56%    failed      0.41%
  74  AZ009            59.87%    failed      0.00%
  75  AZ011            32.67%    passed      9.42%
  76  AZ012            36.99%    passed     43.19%
  77  AZ013            53.92%    failed      0.00%
  78  AZ014            60.92%    failed      0.42%
  79  AZ019            49.06%    failed      0.06%
  80  AZ021            77.61%    failed      0.04%
  81  AZ023_42cmb      37.18%    passed     49.07%
  82  AZ026            71.21%    failed      0.00%
  83  AZ029            41.36%    failed      3.66%
  84  AZ049            41.30%    failed      4.90%
  85  AZ050            71.44%    failed      0.00%
  86  AZ053_07527cmb   43.24%    failed      0.17%
  87  BUGHG0196        73.38%    passed     65.51%
  88  BUTAG3803        73.38%    passed     53.61%
  89  CAFRG4218        73.41%    passed     64.65%
  90  CAFRG4297        73.38%    passed     65.95%
  91  CAMAG3961        73.41%    passed     52.73%
  92  CFIA_LEP3197     72.03%    passed     16.19%
  93  CFIA_LEP3201     57.70%    failed      3.69%
  94  CFIA_LEP3202     65.58%    passed     63.89%
  95  CFIA_LEP3204     66.57%    passed     28.88%
  96  CFIA_LEP3205     57.79%    failed      0.03%
  97  CFIA_LEP3206     63.82%    passed      8.95%
  98  CFIA_LEP3208     66.61%    passed     28.72%
  99  CFIA_LEP3210     57.96%    failed      0.39%
 100  CFIA_LEP3213     57.82%    failed      0.00%
 101  CFIA_LEP3214     63.82%    passed     94.53%
 102  CFIA_LEP3215     57.68%    failed      0.25%
 103  CFIA_LEP3217     67.74%    passed     99.57%
 104  CFIA_LEP3218     73.25%    passed     37.51%
 105  CFIA_LEP3219     89.54%    failed      0.00%
 106  CFIA_LEP3240     57.57%    failed      0.13%
 107  CFIA_LEP3241     65.49%    passed      8.88%
 108  CFIA_LEP3245     80.72%    failed      0.06%
 109  CFIA_LEP3246     66.54%    failed      1.45%
 110  CFIA_LEP3248     67.93%    passed     93.37%
 111  CFIA_LEP3254     64.83%    passed     13.04%
 112  CFIA_LEP3255     58.46%    failed      0.06%
 113  CFIA_LEP3256     58.31%    failed      0.00%
 114  CFIA_LEP3257     59.21%    failed      0.01%
 115  CFIA_LEP3258     58.15%    failed      0.04%
 116  CFIA_LEP3262     66.01%    passed     20.19%
 117  CFIA_LEP3265     58.82%    failed      0.04%
 118  CFIA_LEP3266     64.68%    failed      0.00%
 119  CFIA_LEP3267     59.78%    failed      0.58%
 120  CFIA_LEP3268     69.21%    failed      1.45%
 121  CFIA_LEP3270     67.00%    passed     15.16%
 122  CFIA_LEP3271     59.37%    failed      0.13%
 123  CFIA_LEP3272     59.79%    failed      0.27%
 124  CFIA_LEP3273     76.56%    passed     26.19%
 125  CFIA_LEP3275     62.70%    failed      2.45%
 126  CFIA_LEP3276     59.54%    failed      0.00%
 127  CFIA_LEP3278     67.69%    failed      0.45%
 128  CFIA_LEP3280     82.31%    failed      0.26%
 129  CFIA_LEP3470     73.39%    passed     61.07%
 130  COASG7191        77.50%    passed     31.84%
 131  COFRG4302        91.15%    failed      0.00%
 132  CRFRG4272        77.40%    passed     29.00%
 133  CWM_93_0001      70.27%    failed      0.00%
 134  CWM_94_0372      12.68%    failed      0.07%
 135  CWM_95_0471      24.22%    failed      0.03%
 136  DLW111           83.28%    failed      0.46%
 137  DLW123           25.31%    failed      3.80%
 138  DLW126           35.07%    passed     28.87%
 139  DLW127           55.59%    failed      1.31%
 140  DLW160           93.96%    failed      1.20%
 141  DLW25            15.93%    passed      8.92%
 142  DLW26             6.92%    passed     66.96%
 143  DLW28            12.51%    passed     94.60%
 144  DLW35            12.96%    passed     67.08%
 145  DLW49            15.85%    passed     80.34%
 146  DLW76            76.17%    passed     91.40%
 147  DLW77            57.67%    failed      0.00%
 148  DLW78            27.14%    passed     90.08%
 149  DLW79            14.26%    passed      9.26%
 150  DLW81            56.86%    failed      0.00%
 151  DLW82            12.68%    failed      0.02%
 152  DLW85            17.58%    passed      5.65%
 153  DLW87            15.91%    passed      5.16%
 154  DLW88            16.11%    passed      9.63%
 155  DLW97            16.47%    passed     37.43%
 156  DLW98            21.67%    failed      0.22%
 157  DLW_106          26.67%    passed     76.05%
 158  ERFRG4303        87.12%    passed     59.33%
 159  FEKEG3654        73.38%    passed     54.84%
 160  GOFRG4304        73.38%    passed     63.07%
 161  HEFRG4301        80.87%    failed      4.44%
 162  HST002           71.89%    passed     90.83%
 163  HYFRG4305        80.89%    failed      3.85%
 164  HYTAG6454        73.41%    passed     70.91%
 165  JN_92_0192        2.17%    passed     70.11%
 166  JN_92_0194        2.03%    passed     76.83%
 167  JR440            37.73%    passed     88.57%
 168  JR443            39.79%    passed     33.81%
 169  JR451            47.63%    passed     51.56%
 170  JR453            46.75%    passed      5.85%
 171  JR457            38.93%    passed     87.91%
 172  JR459            40.18%    passed     60.79%
 173  JR460            43.99%    passed     38.77%
 174  KA1412           83.45%    failed      0.01%
 175  KA1413           85.35%    failed      0.38%
 176  KA1604           73.45%    failed      0.00%
 177  KA1890           44.52%    failed      3.37%
 178  KLKDNA0002       17.47%    passed     94.72%
 179  KLKDNA0003       29.23%    failed      2.24%
 180  KLKDNA0006       17.82%    passed     46.48%
 181  KLKDNA0008       15.85%    passed     25.94%
 182  KLKDNA0009       79.18%    passed      5.56%
 183  KLKDNA0010       19.14%    passed     96.27%
 184  KLKDNA0011       19.96%    passed     73.99%
 185  KLKDNA0014       38.55%    failed      1.42%
 186  KLKDNA0015       37.54%    failed      1.11%
 187  KLKDNA0017       18.13%    passed     87.83%
 188  KLKDNA0018       29.90%    passed     69.83%
 189  KLKDNA0019       18.10%    passed     87.49%
 190  KLKDNA0021       18.19%    passed     73.37%
 191  KLKDNA0023       38.46%    failed      0.00%
 192  KLKDNA0024       64.44%    passed     58.39%
 193  KLKDNA0025       48.00%    failed      0.01%
 194  KLKDNA0026       46.97%    failed      0.02%
 195  KLKDNA0027       16.63%    passed     72.09%
 196  KLKDNA0029       57.26%    failed      0.19%
 197  KLKDNA0031       66.61%    passed     31.97%
 198  KLKDNA0032       68.52%    passed     99.36%
 199  KLKDNA0033       49.56%    passed     36.99%
 200  KLKDNA0034       58.03%    failed      2.38%
 201  KLKDNA0037       19.41%    passed     43.74%
 202  KLKDNA0038       78.33%    failed      0.00%
 203  KLKDNA0039       79.40%    passed      8.08%
 204  KLKDNA0043       28.73%    passed     14.07%
 205  KLKDNA0044       38.71%    passed     12.46%
 206  KLKDNA0045       21.74%    passed     91.77%
 207  KLKDNA0046       18.89%    passed     89.47%
 208  KLKDNA0047       76.25%    passed     61.91%
 209  KLKDNA0048       66.72%    passed     15.01%
 210  KLKDNA0049       18.29%    passed     77.84%
 211  KLKDNA0050       17.33%    passed     92.51%
 212  KLKDNA0052       16.97%    passed     97.12%
 213  KLKDNA0056       17.35%    passed     94.69%
 214  KLKDNA0060       27.75%    passed     99.59%
 215  KLKDNA0063       51.84%    failed      2.36%
 216  KLKDNA0064       33.60%    passed     67.00%
 217  KLKDNA0069       26.87%    passed     15.28%
 218  KLKDNA0076       19.47%    passed     68.27%
 219  KLKDNA0080       80.75%    passed     19.62%
 220  KLKDNA0083       28.25%    passed     86.22%
 221  KLKDNA0087       18.50%    passed     89.11%
 222  KLKDNA0088       17.43%    passed     97.95%
 223  KLKDNA0090       78.81%    failed      0.00%
 224  KLKDNA0093       89.66%    failed      0.00%
 225  KLKDNA0111       27.55%    failed      2.56%
 226  KLKDNA0125       19.60%    passed     93.16%
 227  KLKDNA0127       29.23%    passed     40.58%
 228  KLKDNA0134       30.81%    passed     66.84%
 229  KLKDNA0137       33.84%    passed     88.95%
 230  KLKDNA0139       44.41%    failed      0.01%
 231  KLKDNA0144       42.36%    failed      0.00%
 232  KLKDNA0146       83.67%    failed      0.00%
 233  KLKDNA0147       18.36%    passed     95.66%
 234  KLKDNA0148       18.49%    passed     92.91%
 235  KLKDNA0149       41.96%    passed      5.52%
 236  KLKDNA0150       30.98%    failed      1.24%
 237  KLKDNA0151       32.12%    passed     88.66%
 238  KLKDNA0152       29.34%    passed     96.18%
 239  KLKDNA0155       33.78%    passed     43.45%
 240  KLKDNA0160       82.15%    failed      0.02%
 241  KLKDNA0168       60.27%    failed      0.00%
 242  KLKDNA0170       52.53%    failed      0.00%
 243  KLKDNA0171       35.35%    passed     41.38%
 244  KLKDNA0172       67.97%    failed      0.00%
 245  KLKDNA0173       56.07%    failed      0.00%
 246  KLKDNA0174       54.53%    passed     30.89%
 247  KLKDNA0175       30.76%    passed     35.72%
 248  KLKDNA0176       88.71%    failed      0.06%
 249  KLKDNA0177       31.31%    passed     97.43%
 250  KLKDNA0179       51.20%    passed     90.27%
 251  KLKDNA0180       61.93%    failed      0.00%
 252  KLKDNA0181       43.16%    failed      2.15%
 253  KLKDNA0182       64.99%    passed     28.11%
 254  KLKDNA0183       56.84%    passed     99.91%
 255  KLKDNA0184       45.89%    failed      0.00%
 256  KLKDNA0185       31.57%    passed     21.01%
 257  KLKDNA0186       38.91%    passed     13.62%
 258  KLKDNA0190       30.45%    failed      1.12%
 259  KLKDNA0191       53.33%    failed      0.00%
 260  KLKDNA0192       41.43%    passed     14.21%
 261  KLKDNA0193       39.91%    passed     99.63%
 262  KLKDNA0197       62.45%    passed     13.49%
 263  KLKDNA0201       35.48%    passed     18.91%
 264  KLKDNA0214       48.39%    passed     84.45%
 265  KLKDNA0215       48.63%    passed     51.18%
 266  KLKDNA0216       28.12%    passed     66.74%
 267  KLKDNA0223       32.45%    failed      2.71%
 268  KLKDNA0224       51.75%    failed      0.09%
 269  KLKDNA0225       76.16%    failed      2.96%
 270  KLKDNA0226       90.63%    failed      0.00%
 271  KLKDNA0228       43.46%    failed      0.36%
 272  KLKDNA0229       51.06%    failed      0.04%
 273  KLKDNA0230       35.79%    failed      3.85%
 274  KLKDNA0231       27.69%    passed     66.43%
 275  KLKDNA0232       81.40%    failed      0.00%
 276  KLKDNA0233       56.68%    failed      0.00%
 277  KLKDNA0234       38.88%    passed     83.31%
 278  KLKDNA0235       51.67%    failed      0.16%
 279  KLKDNA0242       50.02%    failed      0.01%
 280  KLKDNA0244       49.44%    failed      0.01%
 281  KLKDNA0247       60.15%    failed      0.00%
 282  KLKDNA0261       49.02%    failed      0.00%
 283  KLKDNA0265       48.77%    failed      0.01%
 284  KLKDNA0267       58.45%    passed     57.60%
 285  KLKDNA0281       36.34%    failed      0.00%
 286  KLKDNA0301       56.04%    failed      0.02%
 287  KLKDNA0304       83.73%    failed      0.00%
 288  KLKDNA0305       72.95%    passed     78.91%
 289  KLKDNA0313       68.33%    passed     59.42%
 290  KLKDNA0317       75.72%    passed     70.36%
 291  KLKDNA0319       72.35%    passed     46.90%
 292  KLKDNA0324       39.55%    passed     37.23%
 293  KLKDNA0325       53.75%    failed      0.01%
 294  KLKDNA0329       50.55%    passed     14.72%
 295  KLKDNA0335       70.74%    passed     95.20%
 296  KLKDNA0339       81.07%    failed      0.00%
 297  KLKDNA0340       52.69%    passed     90.07%
 298  KLKDNA0342       76.30%    failed      0.01%
 299  KLKDNA0343       67.58%    passed     25.50%
 300  KLKDNA0346       76.45%    passed     90.74%
 301  KLKDNA0350       55.78%    failed      0.55%
 302  KLKDNA0353       61.06%    passed     48.56%
 303  KLKDNA0354       72.45%    failed      0.00%
 304  KLKDNA0363       69.82%    failed      0.00%
 305  KLKDNA0366       54.59%    failed      0.00%
 306  KLKDNA0367       57.59%    failed      0.00%
 307  KLKDNA0370       69.19%    passed     19.22%
 308  KLKDNA0373       80.62%    failed      0.00%
 309  KLKDNA0376       50.72%    failed      0.00%
 310  KLKDNA0377       70.44%    failed      0.00%
 311  KLKDNA0381       14.43%    passed     53.18%
 312  KLKDNA0384       73.53%    passed     95.52%
 313  KLKDNA0385       43.08%    failed      0.04%
 314  KLKDNA0386       38.30%    passed      5.82%
 315  KLKDNA0387       50.08%    passed     15.27%
 316  KLKDNA0388       55.98%    passed     59.29%
 317  KLKDNA0389       56.59%    passed     94.47%
 318  KLKDNA0390       41.49%    failed      0.47%
 319  KLKDNA0395       38.65%    failed      3.63%
 320  KLKDNA0396       49.81%    passed     33.30%
 321  KLKDNA0397       43.85%    passed     65.13%
 322  KLKDNA0398       56.76%    passed     67.62%
 323  KLKDNA0399       76.37%    passed     76.30%
 324  KLKDNA0400       56.28%    passed     22.61%
 325  KLKDNA0401       76.78%    passed     39.82%
 326  KLKDNA0404       60.54%    passed     61.09%
 327  KLKDNA0405       67.08%    passed     74.69%
 328  KLKDNA0406       42.61%    passed     12.35%
 329  KLKDNA0407       50.56%    failed      2.08%
 330  KLKDNA0408       56.98%    passed     38.55%
 331  KLKDNA0411       55.92%    passed     13.22%
 332  KLKDNA0412       39.52%    failed      0.26%
 333  KLKDNA0413       57.35%    passed     36.93%
 334  KLKDNA0414       44.77%    passed     21.91%
 335  KLKDNA0416       67.47%    passed     97.18%
 336  KLKDNA0421       73.99%    failed      0.00%
 337  KLKDNA0422       82.20%    failed      0.27%
 338  KLKDNA0433       55.47%    passed     48.65%
 339  KLKDNA0434       61.88%    passed      9.19%
 340  LEFRG4285        95.58%    failed      0.94%
 341  LEFRG4308        84.46%    failed      0.01%
 342  LEP1860          58.00%    failed      0.27%
 343  LEP1862          64.08%    passed     35.49%
 344  LEP2818          59.18%    passed      5.09%
 345  LEP2822          72.28%    passed     54.21%
 346  LUFRG4310        73.80%    passed     64.08%
 347  MAASG5407        77.40%    passed     24.07%
 348  MEFRG4312        83.89%    passed      8.05%
 349  MF_05_0053       14.79%    passed     96.81%
 350  MM00005           4.23%    passed      7.47%
 351  MM00107           4.50%    passed     12.28%
 352  MM00152           8.10%    failed      0.02%
 353  MM00160           7.67%    passed     60.98%
 354  MM00328          22.30%    passed     63.21%
 355  MM00821          53.67%    failed      0.00%
 356  MM00998           4.61%    failed      1.49%
 357  MM01048          17.15%    failed      0.00%
 358  MM01162           4.58%    passed     64.76%
 359  MM01170           5.51%    passed     89.93%
 360  MM01542           5.42%    passed      6.41%
 361  MM01651          12.02%    passed     19.66%
 362  MM02752          89.73%    failed      0.00%
 363  MM02777          66.26%    failed      0.00%
 364  MM03713          24.47%    failed      0.00%
 365  MM04358           4.75%    passed     35.66%
 366  MM04543           6.84%    passed     37.52%
 367  MM04583          19.93%    failed      0.00%
 368  MM04601           7.82%    failed      0.06%
 369  MM04752           6.18%    passed     72.05%
 370  MM04919           7.51%    failed      0.49%
 371  MM05114           7.26%    passed     14.06%
 372  MM05132          19.69%    failed      1.30%
 373  MM05153          12.87%    failed      0.20%
 374  MM06745           9.81%    failed      1.53%
 375  MM06993          62.82%    failed      0.00%
 376  MM07065          69.91%    failed      0.00%
 377  MM07669           7.75%    failed      4.63%
 378  MM09267          25.53%    failed      0.03%
 379  MM09888          19.14%    failed      0.00%
 380  MM09893          22.64%    failed      0.00%
 381  MM09894          19.60%    failed      2.32%
 382  MM12192          51.42%    failed      0.99%
 383  MM12241          60.12%    failed      0.01%
 384  MM15883          73.91%    failed      0.00%
 385  MM24022          35.90%    failed      0.17%
 386  MM24108          89.73%    failed      0.00%
 387  MM24147          61.21%    failed      1.87%
 388  MP_AC_01         38.63%    passed     85.30%
 389  MP_AC_07         61.06%    failed      0.00%
 390  NOFRG4313        79.61%    passed     41.25%
 391  NW17737          23.30%    passed     96.39%
 392  NW17831          34.54%    passed     62.02%
 393  NW17832          32.34%    passed     55.75%
 394  NW_T071          28.17%    passed     88.95%
 395  NW_T106           7.87%    passed     20.14%
 396  NW_T107           7.92%    passed     31.98%
 397  NW_T148           7.92%    passed     68.19%
 398  NW_T163          20.82%    passed     57.32%
 399  NW_T187          24.77%    passed     90.01%
 400  OLFRG4315        77.40%    passed     30.19%
 401  OMFRG4283        80.87%    failed      0.96%
 402  ORFRG4316        77.45%    passed     27.33%
 403  OUT_LSU20        71.14%    failed      0.00%
 404  PHFRG4320        80.92%    failed      0.91%
 405  PIASG3801        73.39%    passed     17.62%
 406  POCOG7531        73.38%    passed     52.85%
 407  RHFRG4321        81.12%    passed     21.13%
 408  RR_96_0224       81.07%    failed      0.00%
 409  RR_98_0914       13.51%    passed     76.01%
 410  RWP_87_0438_2    51.48%    passed     11.58%
 411  RWP_94_0187       1.81%    passed     76.29%
 412  RZ10             18.83%    failed      0.00%
 413  RZ120            12.71%    passed      7.67%
 414  RZ14             36.85%    passed     97.65%
 415  RZ147            18.11%    passed     32.96%
 416  RZ25             17.82%    failed      0.68%
 417  RZ277            25.36%    passed     70.56%
 418  RZ281            11.84%    failed      1.03%
 419  RZ341             9.53%    passed     66.80%
 420  RZ35              8.20%    passed     99.41%
 421  RZ351            13.63%    passed     20.95%
 422  RZ382            22.06%    passed     78.88%
 423  RZ384            12.98%    passed     15.47%
 424  RZ388            12.27%    passed      5.99%
 425  RZ395            12.41%    passed     13.48%
 426  RZ463            32.25%    passed     71.49%
 427  RZ464            33.82%    failed      0.01%
 428  RZ469            16.76%    passed     21.61%
 429  RZ472            27.05%    passed     45.27%
 430  RZ474            63.66%    passed     28.76%
 431  RZ482            21.30%    passed     97.44%
 432  RZ50             22.03%    passed     27.56%
 433  RZ511            29.39%    passed     87.21%
 434  RZ517            20.22%    passed     99.86%
 435  RZ523            26.39%    failed      4.22%
 436  RZ54             17.40%    failed      3.91%
 437  RZ541            28.20%    passed     50.39%
 438  RZ548            40.37%    failed      1.27%
 439  RZ552            34.07%    passed      5.40%
 440  RZ595            39.57%    passed     38.02%
 441  RZ596            19.75%    failed      0.00%
 442  RZ600            23.80%    passed     12.06%
 443  RZ61             33.24%    passed     23.87%
 444  RZ610            13.16%    passed     93.28%
 445  RZ617            20.41%    passed     81.99%
 446  RZ618            18.99%    passed     59.34%
 447  RZ619            12.73%    passed     58.36%
 448  RZ620            11.26%    passed     39.80%
 449  RZ621            38.09%    passed     74.30%
 450  RZ634            46.17%    failed      0.00%
 451  RZ636            27.44%    failed      1.26%
 452  RZ658            42.55%    failed      3.48%
 453  RZ659            32.04%    failed      0.00%
 454  RZ699            74.86%    passed     98.65%
 455  RZ97              9.93%    failed      0.14%
 456  SCTAG8183        73.39%    passed     50.24%
 457  SEFRG4322        73.38%    passed     51.64%
 458  SMK001           57.87%    passed     30.98%
 459  SMK002           50.45%    failed      0.00%
 460  SMK003           35.10%    passed     29.39%
 461  SMK015           41.15%    failed      0.16%
 462  SMK023           46.17%    passed      6.66%
 463  SPASG4085        74.45%    passed     42.45%
WARNING: 260 sequences contain more than 50% gaps/ambiguity
****  TOTAL            50.96%  209 sequences failed composition chi2 test (p-value<5%; df=3)

Partition file is not in NEXUS format, assuming RAxML-style partition file...
Subset	Type	Seqs	Sites	Infor	Invar	Model	Name
1	DNA	95	288	65	200	GTR	CAD_pos1
2	DNA	95	288	30	235	GTR	CAD_pos2
3	DNA	95	289	271	15	GTR	CAD_pos3
4	DNA	405	492	119	320	GTR	COI_pos1
5	DNA	405	492	38	426	GTR	COI_pos2
6	DNA	405	492	451	16	GTR	COI_pos3
7	DNA	429	413	37	341	GTR	EF1a-begin_pos1
8	DNA	429	413	18	370	GTR	EF1a-begin_pos2
9	DNA	429	414	359	29	GTR	EF1a-begin_pos3
10	DNA	167	230	28	187	GTR	GAPDH_pos1
11	DNA	167	230	12	199	GTR	GAPDH_pos2
12	DNA	167	231	224	5	GTR	GAPDH_pos3
13	DNA	187	240	64	151	GTR	IDH_pos1
14	DNA	187	241	27	188	GTR	IDH_pos2
15	DNA	187	241	230	9	GTR	IDH_pos3
16	DNA	237	136	28	93	GTR	MDH_pos1
17	DNA	237	135	12	108	GTR	MDH_pos2
18	DNA	237	136	131	5	GTR	MDH_pos3
19	DNA	269	201	27	163	GTR	RpS5_pos1
20	DNA	269	201	8	180	GTR	RpS5_pos2
21	DNA	269	201	190	10	GTR	RpS5_pos3
22	DNA	288	133	29	79	GTR	Wgl400_pos1
23	DNA	288	133	12	96	GTR	Wgl400_pos2
24	DNA	288	134	128	3	GTR	Wgl400_pos3
Degree of missing data: 0.381
Info: multi-threading strategy over partitions



Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.746 seconds
Perform fast likelihood tree search using GTR+I+G model...
Estimate model parameters (epsilon = 5.000)
Initial log-likelihood: -280911.842
Current log-likelihood at step 1: -247623.995
Current log-likelihood at step 2: -239040.932
Current log-likelihood at step 3: -238227.107
Current log-likelihood at step 4: -238119.528
Current log-likelihood at step 5: -238102.858
Current log-likelihood at step 6: -238096.957
Current log-likelihood at step 7: -238089.842
Current log-likelihood at step 8: -238086.570
Parameters optimization took 7 rounds (22.059 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

Perform nearest neighbor interchange...
Estimate model parameters (epsilon = 1.000)
Initial log-likelihood: -237660.023
Current log-likelihood at step 1: -237636.824
Current log-likelihood at step 2: -237609.613
Current log-likelihood at step 3: -237606.637
Current log-likelihood at step 4: -237605.933
Partition-specific rates:  0.255 0.096 1.634 0.259 0.053 7.618 0.101 0.025 0.922 0.166 0.113 1.330 0.142 0.091 1.414 0.222 0.059 1.422 0.230 0.015 1.193 0.123 0.067 1.356
Parameters optimization took 3 rounds (8.044 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

Time for fast ML tree search: 37.965 seconds

NOTE: ModelFinder requires 329 MB RAM!
Selecting individual models for 24 charsets using BIC...
 No. Model        Score       TreeLen     Charset
   1 GTR+F+I+G4   5406.113    2.182       COI_pos2
   2 GTR+F+I+G4   45813.614   37.446      RpS5_pos3
   3 GTR+F+I+G4   74404.236   39.444      EF1a-begin_pos3
   4 GTR+F+I+G4   4355.012    7.249       RpS5_pos1
   5 GTR+F+I+G4   1462.606    0.474       RpS5_pos2
   6 GTR+F+I+G4   42804.870   34.219      IDH_pos3
   7 GTR+F+I+G4   3078.591    1.027       EF1a-begin_pos2
   8 GTR+F+I+G4   5624.459    3.400       IDH_pos1
   9 GTR+F+I+G4   31094.686   44.408      Wgl400_pos3
  10 GTR+F+I+G4   4256.532    4.014       Wgl400_pos1	0h:0m:0s (0h:0m:40s left)
  11 GTR+F+I+G4   1938.673    2.191       Wgl400_pos2	0h:0m:0s (0h:0m:37s left)
  12 GTR+F+I+G4   27317.770   40.966      MDH_pos3	0h:0m:0s (0h:0m:36s left)
  13 GTR+F+I+G4   3675.901    2.199       IDH_pos2	0h:0m:0s (0h:0m:33s left)
  14 GTR+F+I+G4   120317.091  312.843     COI_pos3	0h:0m:0s (0h:0m:31s left)
  15 GTR+F+I+G4   22457.662   10.706      COI_pos1	0h:0m:0s (0h:0m:29s left)
  16 GTR+F+I+G4   31674.181   28.870      GAPDH_pos3	0h:0m:0s (0h:0m:29s left)
  17 GTR+F+I+G4   3325.247    3.556       GAPDH_pos1	0h:0m:0s (0h:0m:27s left)
  18 GTR+F+I+G4   2071.535    2.448       GAPDH_pos2	0h:0m:0s (0h:0m:26s left)
  19 GTR+F+I+G4   1396.338    1.693       MDH_pos2	0h:0m:0s (0h:0m:26s left)
  20 GTR+F+I+G4   3399.700    6.402       MDH_pos1	0h:0m:0s (0h:0m:25s left)
  21 GTR+F+I+G4   2979.087    1.486       CAD_pos2	0h:0m:0s (0h:0m:25s left)
  22 GTR+F+I+G4   26314.876   26.842      CAD_pos3	0h:0m:1s (0h:0m:24s left)
  23 GTR+F+I+G4   5143.524    4.783       CAD_pos1	0h:0m:1s (0h:0m:26s left)
  24 GTR+F+I+G4   6287.777    3.700       EF1a-begin_pos1	0h:0m:1s (0h:0m:31s left)
Full partition model BIC score: 485545.759 (LnL: -237575.425  df:1186)
Merging models to increase model fit (about 553 total partition schemes)...
  25 GTR+F+I+G4   486001.711  22.760      COI_pos1+EF1a-begin_pos3	0h:0m:10s (0h:3m:49s left)
  26 GTR+F+I+G4   491876.176  44.520      COI_pos2+COI_pos3	0h:0m:11s (0h:3m:45s left)
  27 GTR+F+I+G4   493059.940  62.655      COI_pos3+EF1a-begin_pos3	0h:0m:12s (0h:4m:2s left)
  28 GTR+F+I+G4   492066.782  46.186      COI_pos3+EF1a-begin_pos2	0h:0m:13s (0h:4m:20s left)
  29 GTR+F+I+G4   492457.803  42.846      COI_pos3+EF1a-begin_pos1	0h:0m:15s (0h:4m:40s left)
  30 GTR+F+I+G4   486235.160  18.360      EF1a-begin_pos1+EF1a-begin_pos3	0h:0m:18s (0h:5m:19s left)
  31 GTR+F+I+G4   486064.132  18.991      EF1a-begin_pos2+EF1a-begin_pos3	0h:0m:22s (0h:6m:20s left)
  32 GTR+F+I+G4   486296.594  19.759      COI_pos2+EF1a-begin_pos3	0h:0m:23s (0h:6m:14s left)
  33 GTR+F+I+G4   485990.464  7.212       COI_pos1+COI_pos2	0h:0m:24s (0h:6m:29s left)
  34 GTR+F+I+G4   485853.218  7.751       COI_pos1+EF1a-begin_pos2	0h:0m:25s (0h:6m:24s left)
  35 GTR+F+I+G4   485880.655  7.863       COI_pos1+EF1a-begin_pos1	0h:0m:26s (0h:6m:37s left)
  36 GTR+F+I+G4   485697.640  3.743       COI_pos2+EF1a-begin_pos1	0h:0m:28s (0h:6m:52s left)
  37 GTR+F+I+G4   485612.833  2.949       EF1a-begin_pos1+EF1a-begin_pos2	0h:0m:29s (0h:6m:55s left)
  38 GTR+F+I+G4   485554.694  2.362       COI_pos2+EF1a-begin_pos2	0h:0m:31s (0h:7m:7s left)
  39 GTR+F+I+G4   490605.350  92.010      COI_pos1+COI_pos3	0h:0m:34s (0h:7m:36s left)
  40 GTR+F+I+G4   490902.888  101.164     COI_pos3+RpS5_pos3	0h:0m:37s (0h:8m:6s left)
  41 GTR+F+I+G4   490532.187  116.145     COI_pos3+IDH_pos3	0h:0m:45s (0h:9m:22s left)
  42 GTR+F+I+G4   489713.026  115.825     COI_pos3+RpS5_pos2	0h:0m:49s (0h:10m:5s left)
  43 GTR+F+I+G4   490727.844  106.967     COI_pos3+GAPDH_pos3	0h:0m:50s (0h:9m:56s left)
  44 GTR+F+I+G4   489172.278  119.101     COI_pos3+IDH_pos1	0h:0m:52s (0h:10m:7s left)
  45 GTR+F+I+G4   490207.210  104.464     COI_pos3+RpS5_pos1	0h:0m:53s (0h:9m:59s left)
  46 GTR+F+I+G4   490980.648  118.652     COI_pos3+Wgl400_pos3	0h:0m:53s (0h:9m:50s left)
  47 GTR+F+I+G4   485811.665  41.676      EF1a-begin_pos3+RpS5_pos3	0h:0m:59s (0h:10m:39s left)
  48 GTR+F+I+G4   485952.073  28.386      EF1a-begin_pos3+RpS5_pos1	0h:1m:1s (0h:10m:48s left)
  49 GTR+F+I+G4   485815.914  27.386      EF1a-begin_pos3+RpS5_pos2	0h:1m:9s (0h:11m:54s left)
  50 GTR+F+I+G4   489052.772  129.026     COI_pos3+Wgl400_pos2	0h:1m:9s (0h:11m:39s left)
  51 GTR+F+I+G4   488893.653  148.332     COI_pos3+MDH_pos3	0h:1m:10s (0h:11m:33s left)
  52 GTR+F+I+G4   488933.481  118.006     COI_pos3+IDH_pos2	0h:1m:11s (0h:11m:33s left)
  53 GTR+F+I+G4   489872.328  118.823     COI_pos3+Wgl400_pos1	0h:1m:11s (0h:11m:18s left)
  54 GTR+F+I+G4   489268.579  111.400     COI_pos3+GAPDH_pos1	0h:1m:17s (0h:11m:58s left)
  55 GTR+F+I+G4   486016.834  45.016      EF1a-begin_pos3+IDH_pos3	0h:1m:19s (0h:12m:4s left)
  56 GTR+F+I+G4   486453.527  19.471      COI_pos1+RpS5_pos3	0h:1m:23s (0h:12m:18s left)
  57 GTR+F+I+G4   489205.249  125.591     COI_pos3+GAPDH_pos2	0h:1m:26s (0h:12m:33s left)
  58 GTR+F+I+G4   485750.910  9.613       COI_pos1+RpS5_pos1	0h:1m:29s (0h:12m:47s left)
  59 GTR+F+I+G4   485789.141  28.914      EF1a-begin_pos3+IDH_pos1	0h:1m:33s (0h:13m:5s left)
  60 GTR+F+I+G4   488267.599  144.610     COI_pos3+MDH_pos2	0h:1m:35s (0h:13m:1s left)
  61 GTR+F+I+G4   485685.793  42.313      EF1a-begin_pos3+Wgl400_pos3	0h:1m:35s (0h:12m:52s left)
  62 GTR+F+I+G4   489111.255  131.160     COI_pos3+MDH_pos1	0h:1m:36s (0h:12m:44s left)
  63 GTR+F+I+G4   487636.952  263.913     CAD_pos3+COI_pos3	0h:1m:42s (0h:13m:18s left)
  64 GTR+F+I+G4   485975.412  34.159      EF1a-begin_pos3+Wgl400_pos1	0h:1m:43s (0h:13m:11s left)
  65 GTR+F+I+G4   485659.674  41.521      EF1a-begin_pos3+GAPDH_pos3	0h:1m:43s (0h:13m:0s left)
  66 GTR+F+I+G4   485613.202  8.497       COI_pos1+RpS5_pos2	0h:1m:46s (0h:13m:2s left)
  67 GTR+F+I+G4   485693.965  33.287      EF1a-begin_pos3+Wgl400_pos2	0h:1m:49s (0h:13m:12s left)
  68 GTR+F+I+G4   488068.966  172.147     CAD_pos1+COI_pos3	0h:1m:49s (0h:13m:3s left)
  69 GTR+F+I+G4   485907.423  27.117      EF1a-begin_pos3+IDH_pos2	0h:1m:51s (0h:12m:59s left)
  70 GTR+F+I+G4   485845.187  41.209      EF1a-begin_pos3+MDH_pos3	0h:1m:51s (0h:12m:50s left)
  71 GTR+F+I+G4   485966.766  28.676      EF1a-begin_pos3+GAPDH_pos1	0h:1m:54s (0h:12m:55s left)
  72 GTR+F+I+G4   486524.384  22.085      COI_pos1+IDH_pos3	0h:1m:55s (0h:12m:53s left)
  73 GTR+F+I+G4   486495.510  24.270      EF1a-begin_pos1+RpS5_pos3	0h:1m:56s (0h:12m:46s left)
  74 GTR+F+I+G4   485985.371  27.802      EF1a-begin_pos3+GAPDH_pos2	0h:1m:58s (0h:12m:48s left)
  75 GTR+F+I+G4   485581.757  4.069       EF1a-begin_pos1+RpS5_pos1	0h:1m:59s (0h:12m:43s left)
  76 GTR+F+I+G4   485737.670  32.487      EF1a-begin_pos3+MDH_pos1	0h:2m:1s (0h:12m:42s left)
  77 GTR+F+I+G4   485528.411  3.399       EF1a-begin_pos1+RpS5_pos2	0h:2m:1s (0h:12m:31s left)
  78 GTR+F+I+G4   486378.935  40.907      CAD_pos3+EF1a-begin_pos3	0h:2m:1s (0h:12m:22s left)
  79 GTR+F+I+G4   485705.441  10.712      COI_pos1+IDH_pos1	0h:2m:6s (0h:12m:36s left)
  80 GTR+F+I+G4   487569.980  210.987     CAD_pos2+COI_pos3	0h:2m:6s (0h:12m:29s left)
  81 GTR+F+I+G4   486307.717  29.700      EF1a-begin_pos2+RpS5_pos3	0h:2m:7s (0h:12m:21s left)
  82 GTR+F+I+G4   486172.489  17.970      COI_pos1+Wgl400_pos3	0h:2m:8s (0h:12m:16s left)
  83 GTR+F+I+G4   486003.347  10.802      COI_pos1+Wgl400_pos1	0h:2m:8s (0h:12m:6s left)
  84 GTR+F+I+G4   486385.207  17.874      COI_pos1+GAPDH_pos3	0h:2m:8s (0h:11m:56s left)
  85 GTR+F+I+G4   485465.633  0.776       EF1a-begin_pos2+RpS5_pos2	0h:2m:10s (0h:11m:59s left)
  86 GTR+F+I+G4   485634.849  1.827       EF1a-begin_pos2+RpS5_pos1	0h:2m:13s (0h:12m:7s left)
  87 GTR+F+I+G4   485538.617  10.053      COI_pos1+Wgl400_pos2	0h:2m:14s (0h:11m:58s left)
  88 GTR+F+I+G4   485886.383  9.778       COI_pos1+IDH_pos2	0h:2m:14s (0h:11m:49s left)
  89 GTR+F+I+G4   486733.354  18.295      EF1a-begin_pos1+IDH_pos3	0h:2m:14s (0h:11m:41s left)
  90 GTR+F+I+G4   485651.189  31.477      EF1a-begin_pos3+MDH_pos2	0h:2m:14s (0h:11m:34s left)
  91 GTR+F+I+G4   485930.891  29.659      CAD_pos1+EF1a-begin_pos3	0h:2m:17s (0h:11m:37s left)
  92 GTR+F+I+G4   485540.620  4.641       EF1a-begin_pos1+IDH_pos1	0h:2m:19s (0h:11m:38s left)
  93 GTR+F+I+G4   486202.063  17.333      COI_pos1+MDH_pos3	0h:2m:20s (0h:11m:34s left)
  94 GTR+F+I+G4   485836.801  8.648       COI_pos1+GAPDH_pos2	0h:2m:20s (0h:11m:26s left)
  95 GTR+F+I+G4   485959.941  27.659      CAD_pos2+EF1a-begin_pos3	0h:2m:20s (0h:11m:17s left)
  96 GTR+F+I+G4   485780.277  9.285       COI_pos1+GAPDH_pos1	0h:2m:22s (0h:11m:16s left)
  97 GTR+F+I+G4   486000.071  16.226      EF1a-begin_pos1+Wgl400_pos3	0h:2m:24s (0h:11m:17s left)
  98 GTR+F+I+G4   485661.425  4.216       EF1a-begin_pos1+Wgl400_pos1	0h:2m:26s (0h:11m:18s left)
  99 GTR+F+I+G4   486150.651  16.296      COI_pos2+RpS5_pos3	0h:2m:26s (0h:11m:11s left)
 100 GTR+F+I+G4   486316.510  16.683      EF1a-begin_pos1+GAPDH_pos3	0h:2m:27s (0h:11m:8s left)
 101 GTR+F+I+G4   486537.405  34.528      CAD_pos3+COI_pos1	0h:2m:28s (0h:11m:4s left)
 102 GTR+F+I+G4   486482.390  18.433      EF1a-begin_pos2+IDH_pos3	0h:2m:29s (0h:11m:1s left)
 103 GTR+F+I+G4   485529.032  4.227       EF1a-begin_pos1+Wgl400_pos2	0h:2m:31s (0h:11m:3s left)
 104 GTR+F+I+G4   485665.184  3.261       COI_pos2+RpS5_pos1	0h:2m:31s (0h:10m:56s left)
 105 GTR+F+I+G4   485668.482  4.292       EF1a-begin_pos1+IDH_pos2	0h:2m:32s (0h:10m:51s left)
 106 GTR+F+I+G4   485589.514  9.889       COI_pos1+MDH_pos1	0h:2m:32s (0h:10m:43s left)
 107 GTR+F+I+G4   485498.866  2.181       COI_pos2+RpS5_pos2	0h:2m:34s (0h:10m:43s left)
 108 GTR+F+I+G4   485661.686  3.601       EF1a-begin_pos2+IDH_pos1	0h:2m:34s (0h:10m:36s left)
 109 GTR+F+I+G4   485672.951  2.053       EF1a-begin_pos2+Wgl400_pos1	0h:2m:36s (0h:10m:36s left)
 110 GTR+F+I+G4   486259.037  16.396      EF1a-begin_pos2+GAPDH_pos3	0h:2m:37s (0h:10m:35s left)
 111 GTR+F+I+G4   486223.827  11.874      EF1a-begin_pos1+MDH_pos3	0h:2m:37s (0h:10m:29s left)
 112 GTR+F+I+G4   486031.995  10.166      EF1a-begin_pos2+Wgl400_pos3	0h:2m:38s (0h:10m:23s left)
 113 GTR+F+I+G4   485513.518  2.246       EF1a-begin_pos2+IDH_pos2	0h:2m:40s (0h:10m:25s left)
 114 GTR+F+I+G4   485495.275  4.303       EF1a-begin_pos1+GAPDH_pos1	0h:2m:41s (0h:10m:20s left)
 115 GTR+F+I+G4   485568.311  1.654       EF1a-begin_pos2+Wgl400_pos2	0h:2m:42s (0h:10m:18s left)
 116 GTR+F+I+G4   485525.354  10.161      COI_pos1+MDH_pos2	0h:2m:42s (0h:10m:13s left)
 117 GTR+F+I+G4   485586.267  3.566       EF1a-begin_pos1+GAPDH_pos2	0h:2m:43s (0h:10m:8s left)
 118 GTR+F+I+G4   486534.131  15.592      COI_pos2+IDH_pos3	0h:2m:45s (0h:10m:10s left)
 119 GTR+F+I+G4   485652.274  19.932      CAD_pos1+COI_pos1	0h:2m:45s (0h:10m:3s left)
 120 GTR+F+I+G4   485571.237  2.336       EF1a-begin_pos2+GAPDH_pos1	0h:2m:47s (0h:10m:4s left)
 121 GTR+F+I+G4   486157.847  12.835      EF1a-begin_pos2+MDH_pos3	0h:2m:48s (0h:10m:0s left)
 122 GTR+F+I+G4   485692.039  4.307       COI_pos2+IDH_pos1	0h:2m:48s (0h:9m:55s left)
 123 GTR+F+I+G4   485721.128  9.261       CAD_pos2+COI_pos1	0h:2m:49s (0h:9m:52s left)
 124 GTR+F+I+G4   485546.123  4.204       EF1a-begin_pos1+MDH_pos1	0h:2m:49s (0h:9m:47s left)
 125 GTR+F+I+G4   487027.586  17.248      CAD_pos3+EF1a-begin_pos1	0h:2m:49s (0h:9m:41s left)
 126 GTR+F+I+G4   485488.783  3.096       EF1a-begin_pos2+GAPDH_pos2	0h:2m:51s (0h:9m:41s left)
 127 GTR+F+I+G4   486324.390  14.558      COI_pos2+GAPDH_pos3	0h:2m:52s (0h:9m:39s left)
 128 GTR+F+I+G4   485700.774  3.214       COI_pos2+Wgl400_pos1	0h:2m:54s (0h:9m:38s left)
 129 GTR+F+I+G4   485653.880  2.304       EF1a-begin_pos2+MDH_pos1	0h:2m:54s (0h:9m:32s left)
 130 GTR+F+I+G4   486092.359  9.196       COI_pos2+Wgl400_pos3	0h:2m:55s (0h:9m:30s left)
 131 GTR+F+I+G4   485610.541  2.741       COI_pos2+Wgl400_pos2	0h:2m:56s (0h:9m:27s left)
 132 GTR+F+I+G4   485521.831  4.005       EF1a-begin_pos1+MDH_pos2	0h:2m:56s (0h:9m:22s left)
 133 GTR+F+I+G4   485554.260  2.533       COI_pos2+IDH_pos2	0h:2m:57s (0h:9m:21s left)
 134 GTR+F+I+G4   486671.711  19.774      CAD_pos3+EF1a-begin_pos2	0h:2m:59s (0h:9m:19s left)
 135 GTR+F+I+G4   485498.306  1.312       EF1a-begin_pos2+MDH_pos2	0h:2m:59s (0h:9m:17s left)
 136 GTR+F+I+G4   485606.288  4.159       CAD_pos2+EF1a-begin_pos1	0h:3m:0s (0h:9m:12s left)
 137 GTR+F+I+G4   486269.431  13.226      COI_pos2+MDH_pos3	0h:3m:0s (0h:9m:7s left)
 138 GTR+F+I+G4   485627.013  2.553       COI_pos2+GAPDH_pos1	0h:3m:0s (0h:9m:2s left)
 139 GTR+F+I+G4   485517.963  1.784       CAD_pos2+EF1a-begin_pos2	0h:3m:3s (0h:9m:7s left)
 140 GTR+F+I+G4   485549.922  2.592       COI_pos2+GAPDH_pos2	0h:3m:4s (0h:9m:2s left)
 141 GTR+F+I+G4   485612.383  5.507       CAD_pos1+EF1a-begin_pos1	0h:3m:4s (0h:8m:59s left)
 142 GTR+F+I+G4   485696.162  3.748       CAD_pos1+EF1a-begin_pos2	0h:3m:4s (0h:8m:54s left)
 143 GTR+F+I+G4   485684.849  2.510       COI_pos2+MDH_pos1	0h:3m:5s (0h:8m:51s left)
 144 GTR+F+I+G4   486853.449  21.162      CAD_pos3+COI_pos2	0h:3m:5s (0h:8m:47s left)
 145 GTR+F+I+G4   486133.531  21.029      RpS5_pos1+RpS5_pos3	0h:3m:7s (0h:8m:47s left)
 146 GTR+F+I+G4   485910.638  17.957      RpS5_pos2+RpS5_pos3	0h:3m:7s (0h:8m:42s left)
 147 GTR+F+I+G4   485718.887  3.972       CAD_pos1+COI_pos2	0h:3m:7s (0h:8m:38s left)
 148 GTR+F+I+G4   485503.215  2.669       COI_pos2+MDH_pos2	0h:3m:8s (0h:8m:36s left)
 149 GTR+F+I+G4   485521.142  2.674       CAD_pos2+COI_pos2	0h:3m:8s (0h:8m:32s left)
 150 GTR+F+I+G4   485519.903  1.403       RpS5_pos1+RpS5_pos2	0h:3m:9s (0h:8m:28s left)
 151 GTR+F+I+G4   485572.629  42.300      IDH_pos3+RpS5_pos3	0h:3m:9s (0h:8m:25s left)
 152 GTR+F+I+G4   486301.120  22.867      IDH_pos3+RpS5_pos1	0h:3m:9s (0h:8m:21s left)
 153 GTR+F+I+G4   486107.983  22.224      IDH_pos3+RpS5_pos2	0h:3m:11s (0h:8m:19s left)
 154 GTR+F+I+G4   486147.036  28.677      RpS5_pos3+Wgl400_pos1	0h:3m:12s (0h:8m:17s left)
 155 GTR+F+I+G4   485651.724  43.560      RpS5_pos3+Wgl400_pos3	0h:3m:12s (0h:8m:13s left)
 156 GTR+F+I+G4   485488.352  40.901      GAPDH_pos3+RpS5_pos3	0h:3m:12s (0h:8m:9s left)
 157 GTR+F+I+G4   485945.537  22.106      IDH_pos1+RpS5_pos3	0h:3m:13s (0h:8m:7s left)
 158 GTR+F+I+G4   485551.006  4.732       IDH_pos1+RpS5_pos1	0h:3m:13s (0h:8m:4s left)
 159 GTR+F+I+G4   485937.450  19.434      RpS5_pos1+Wgl400_pos3	0h:3m:14s (0h:8m:1s left)
 160 GTR+F+I+G4   485881.755  26.816      RpS5_pos3+Wgl400_pos2	0h:3m:14s (0h:7m:58s left)
 161 GTR+F+I+G4   486008.993  20.996      GAPDH_pos3+RpS5_pos1	0h:3m:15s (0h:7m:55s left)
 162 GTR+F+I+G4   485553.382  3.370       IDH_pos1+RpS5_pos2	0h:3m:15s (0h:7m:52s left)
 163 GTR+F+I+G4   485922.897  20.269      GAPDH_pos3+RpS5_pos2	0h:3m:15s (0h:7m:48s left)
 164 GTR+F+I+G4   485988.784  19.137      IDH_pos2+RpS5_pos3	0h:3m:16s (0h:7m:46s left)
 165 GTR+F+I+G4   485544.874  2.880       RpS5_pos1+Wgl400_pos1	0h:3m:16s (0h:7m:42s left)
 166 GTR+F+I+G4   485561.664  2.400       RpS5_pos2+Wgl400_pos1	0h:3m:16s (0h:7m:39s left)
 167 GTR+F+I+G4   485780.010  15.227      RpS5_pos2+Wgl400_pos3	0h:3m:17s (0h:7m:36s left)
 168 GTR+F+I+G4   485690.070  2.523       IDH_pos2+RpS5_pos1	0h:3m:18s (0h:7m:35s left)
 169 GTR+F+I+G4   486030.784  19.853      MDH_pos3+RpS5_pos1	0h:3m:19s (0h:7m:32s left)
 170 GTR+F+I+G4   485513.695  41.982      MDH_pos3+RpS5_pos3	0h:3m:19s (0h:7m:29s left)
 171 GTR+F+I+G4   485509.304  2.305       RpS5_pos1+Wgl400_pos2	0h:3m:20s (0h:7m:27s left)
 172 GTR+F+I+G4   485513.487  2.085       IDH_pos2+RpS5_pos2	0h:3m:20s (0h:7m:23s left)
 173 GTR+F+I+G4   485516.020  1.603       RpS5_pos2+Wgl400_pos2	0h:3m:20s (0h:7m:20s left)
 174 GTR+F+I+G4   486102.949  16.286      IDH_pos1+IDH_pos3	0h:3m:20s (0h:7m:17s left)
 175 GTR+F+I+G4   486013.371  21.504      GAPDH_pos1+RpS5_pos3	0h:3m:21s (0h:7m:14s left)
 176 GTR+F+I+G4   485526.139  38.070      GAPDH_pos3+IDH_pos3	0h:3m:22s (0h:7m:13s left)
 177 GTR+F+I+G4   485590.500  8.349       GAPDH_pos1+RpS5_pos1	0h:3m:22s (0h:7m:9s left)
 178 GTR+F+I+G4   486351.153  27.615      IDH_pos3+Wgl400_pos1	0h:3m:22s (0h:7m:6s left)
 179 GTR+F+I+G4   485906.154  15.912      MDH_pos3+RpS5_pos2	0h:3m:23s (0h:7m:4s left)
 180 GTR+F+I+G4   485541.779  4.372       GAPDH_pos1+RpS5_pos2	0h:3m:23s (0h:7m:1s left)
 181 GTR+F+I+G4   486003.888  20.146      GAPDH_pos2+RpS5_pos3	0h:3m:24s (0h:6m:59s left)
 182 GTR+F+I+G4   485718.151  49.071      IDH_pos3+Wgl400_pos3	0h:3m:24s (0h:6m:56s left)
 183 GTR+F+I+G4   485863.449  39.966      CAD_pos3+RpS5_pos3	0h:3m:25s (0h:6m:55s left)
 184 GTR+F+I+G4   486078.165  26.854      IDH_pos3+Wgl400_pos2	0h:3m:25s (0h:6m:52s left)
 185 GTR+F+I+G4   486170.759  15.413      IDH_pos2+IDH_pos3	0h:3m:26s (0h:6m:50s left)
 186 GTR+F+I+G4   486570.767  24.203      CAD_pos3+RpS5_pos1	0h:3m:26s (0h:6m:47s left)
 187 GTR+F+I+G4   485501.777  3.000       GAPDH_pos2+RpS5_pos2	0h:3m:26s (0h:6m:44s left)
 188 GTR+F+I+G4   485960.864  27.979      MDH_pos1+RpS5_pos3	0h:3m:27s (0h:6m:42s left)
 189 GTR+F+I+G4   485858.205  17.501      GAPDH_pos3+IDH_pos1	0h:3m:28s (0h:6m:41s left)
 190 GTR+F+I+G4   485507.711  5.018       MDH_pos1+RpS5_pos1	0h:3m:28s (0h:6m:38s left)
 191 GTR+F+I+G4   485555.267  4.467       IDH_pos1+Wgl400_pos1	0h:3m:29s (0h:6m:36s left)
 192 GTR+F+I+G4   485767.048  20.724      IDH_pos1+Wgl400_pos3	0h:3m:29s (0h:6m:34s left)
 193 GTR+F+I+G4   485513.084  43.329      IDH_pos3+MDH_pos3	0h:3m:30s (0h:6m:31s left)
 194 GTR+F+I+G4   485644.984  3.423       GAPDH_pos2+RpS5_pos1	0h:3m:31s (0h:6m:30s left)
 195 GTR+F+I+G4   485510.858  44.217      GAPDH_pos3+Wgl400_pos3	0h:3m:31s (0h:6m:27s left)
 196 GTR+F+I+G4   486237.822  18.651      GAPDH_pos1+IDH_pos3	0h:3m:31s (0h:6m:25s left)
 197 GTR+F+I+G4   486030.847  24.901      GAPDH_pos3+Wgl400_pos1	0h:3m:31s (0h:6m:22s left)
 198 GTR+F+I+G4   486036.537  24.731      Wgl400_pos1+Wgl400_pos3	0h:3m:31s (0h:6m:20s left)
 199 GTR+F+I+G4   485543.572  2.681       MDH_pos1+RpS5_pos2	0h:3m:32s (0h:6m:18s left)
 200 GTR+F+I+G4   485499.203  3.994       IDH_pos1+Wgl400_pos2	0h:3m:33s (0h:6m:16s left)
 201 GTR+F+I+G4   485760.759  24.225      MDH_pos2+RpS5_pos3	0h:3m:33s (0h:6m:13s left)
 202 GTR+F+I+G4   485596.459  3.481       IDH_pos1+IDH_pos2	0h:3m:33s (0h:6m:10s left)
 203 GTR+F+I+G4   486294.734  24.057      CAD_pos3+RpS5_pos2	0h:3m:33s (0h:6m:8s left)
 204 GTR+F+I+G4   485731.063  19.719      Wgl400_pos2+Wgl400_pos3	0h:3m:34s (0h:6m:6s left)
 205 GTR+F+I+G4   485534.511  3.353       Wgl400_pos1+Wgl400_pos2	0h:3m:34s (0h:6m:4s left)
 206 GTR+F+I+G4   486206.561  18.799      GAPDH_pos2+IDH_pos3	0h:3m:34s (0h:6m:2s left)
 207 GTR+F+I+G4   486008.139  16.357      GAPDH_pos3+IDH_pos2	0h:3m:35s (0h:5m:59s left)
 208 GTR+F+I+G4   485836.998  24.507      GAPDH_pos3+Wgl400_pos2	0h:3m:35s (0h:5m:57s left)
 209 GTR+F+I+G4   485658.776  3.387       IDH_pos2+Wgl400_pos1	0h:3m:36s (0h:5m:56s left)
 210 GTR+F+I+G4   485921.299  14.646      IDH_pos2+Wgl400_pos3	0h:3m:36s (0h:5m:54s left)
 211 GTR+F+I+G4   486009.643  21.084      CAD_pos1+RpS5_pos3	0h:3m:37s (0h:5m:52s left)
 212 GTR+F+I+G4   485501.141  2.010       MDH_pos2+RpS5_pos1	0h:3m:37s (0h:5m:50s left)
 213 GTR+F+I+G4   485834.185  19.877      IDH_pos1+MDH_pos3	0h:3m:38s (0h:5m:48s left)
 214 GTR+F+I+G4   485611.580  42.499      MDH_pos3+Wgl400_pos3	0h:3m:38s (0h:5m:46s left)
 215 GTR+F+I+G4   485498.943  5.524       CAD_pos1+RpS5_pos1	0h:3m:38s (0h:5m:44s left)
 216 GTR+F+I+G4   485649.163  38.903      CAD_pos3+IDH_pos3	0h:3m:38s (0h:5m:41s left)
 217 GTR+F+I+G4   485530.256  5.105       GAPDH_pos1+IDH_pos1	0h:3m:39s (0h:5m:39s left)
 218 GTR+F+I+G4   486132.702  25.004      IDH_pos3+MDH_pos1	0h:3m:39s (0h:5m:38s left)
 219 GTR+F+I+G4   486133.292  27.156      MDH_pos3+Wgl400_pos1	0h:3m:40s (0h:5m:36s left)
 220 GTR+F+I+G4   485602.756  39.578      GAPDH_pos3+MDH_pos3	0h:3m:40s (0h:5m:33s left)
 221 GTR+F+I+G4   485472.883  1.079       MDH_pos2+RpS5_pos2	0h:3m:40s (0h:5m:31s left)
 222 GTR+F+I+G4   485981.552  13.359      GAPDH_pos1+GAPDH_pos3	0h:3m:40s (0h:5m:29s left)
 223 GTR+F+I+G4   485932.455  18.061      CAD_pos2+RpS5_pos3	0h:3m:42s (0h:5m:29s left)
 224 GTR+F+I+G4   485824.071  20.663      GAPDH_pos1+Wgl400_pos3	0h:3m:42s (0h:5m:27s left)
 225 GTR+F+I+G4   485616.210  8.390       GAPDH_pos1+Wgl400_pos1	0h:3m:43s (0h:5m:25s left)
 226 GTR+F+I+G4   485598.371  3.342       IDH_pos2+Wgl400_pos2	0h:3m:43s (0h:5m:23s left)
 227 GTR+F+I+G4   485548.377  3.775       CAD_pos1+RpS5_pos2	0h:3m:43s (0h:5m:21s left)
 228 GTR+F+I+G4   485633.904  3.586       GAPDH_pos2+IDH_pos1	0h:3m:43s (0h:5m:18s left)
 229 GTR+F+I+G4   485606.311  3.618       CAD_pos2+RpS5_pos1	0h:3m:44s (0h:5m:17s left)
 230 GTR+F+I+G4   485836.244  22.766      MDH_pos3+Wgl400_pos2	0h:3m:44s (0h:5m:15s left)
 231 GTR+F+I+G4   486015.768  13.403      GAPDH_pos2+GAPDH_pos3	0h:3m:44s (0h:5m:13s left)
 232 GTR+F+I+G4   485594.496  2.858       GAPDH_pos1+IDH_pos2	0h:3m:45s (0h:5m:11s left)
 233 GTR+F+I+G4   485951.945  16.342      IDH_pos2+MDH_pos3	0h:3m:45s (0h:5m:9s left)
 234 GTR+F+I+G4   485537.922  3.686       GAPDH_pos1+Wgl400_pos2	0h:3m:45s (0h:5m:7s left)
 235 GTR+F+I+G4   485644.167  2.827       GAPDH_pos2+Wgl400_pos1	0h:3m:46s (0h:5m:5s left)
 236 GTR+F+I+G4   485899.765  15.014      GAPDH_pos2+Wgl400_pos3	0h:3m:46s (0h:5m:4s left)
 237 GTR+F+I+G4   485497.600  1.666       CAD_pos2+RpS5_pos2	0h:3m:46s (0h:5m:2s left)
 238 GTR+F+I+G4   485875.445  31.679      CAD_pos3+GAPDH_pos3	0h:3m:46s (0h:5m:0s left)
 239 GTR+F+I+G4   486279.399  20.910      CAD_pos3+IDH_pos1	0h:3m:47s (0h:4m:58s left)
 240 GTR+F+I+G4   485487.036  4.408       IDH_pos1+MDH_pos1	0h:3m:47s (0h:4m:57s left)
 241 GTR+F+I+G4   486575.362  26.330      CAD_pos3+Wgl400_pos1	0h:3m:48s (0h:4m:56s left)
 242 GTR+F+I+G4   485925.176  24.534      IDH_pos3+MDH_pos2	0h:3m:48s (0h:4m:54s left)
 243 GTR+F+I+G4   486067.228  43.841      CAD_pos3+Wgl400_pos3	0h:3m:48s (0h:4m:52s left)
 244 GTR+F+I+G4   485811.122  29.739      MDH_pos1+Wgl400_pos3	0h:3m:49s (0h:4m:50s left)
 245 GTR+F+I+G4   485922.533  17.866      GAPDH_pos1+MDH_pos3	0h:3m:49s (0h:4m:48s left)
 246 GTR+F+I+G4   485855.498  22.185      GAPDH_pos3+MDH_pos1	0h:3m:50s (0h:4m:47s left)
 247 GTR+F+I+G4   485529.114  2.359       GAPDH_pos2+IDH_pos2	0h:3m:50s (0h:4m:45s left)
 248 GTR+F+I+G4   486097.737  18.515      CAD_pos1+IDH_pos3	0h:3m:50s (0h:4m:43s left)
 249 GTR+F+I+G4   485541.294  4.708       MDH_pos1+Wgl400_pos1	0h:3m:50s (0h:4m:42s left)
 250 GTR+F+I+G4   485584.047  2.717       GAPDH_pos2+Wgl400_pos2	0h:3m:51s (0h:4m:40s left)
 251 GTR+F+I+G4   485545.144  2.181       GAPDH_pos1+GAPDH_pos2	0h:3m:51s (0h:4m:38s left)
 252 GTR+F+I+G4   486034.345  13.719      GAPDH_pos2+MDH_pos3	0h:3m:51s (0h:4m:36s left)
 253 GTR+F+I+G4   485644.815  3.129       IDH_pos2+MDH_pos1	0h:3m:51s (0h:4m:34s left)
 254 GTR+F+I+G4   486234.125  25.947      CAD_pos3+Wgl400_pos2	0h:3m:52s (0h:4m:33s left)
 255 GTR+F+I+G4   485468.966  4.089       MDH_pos1+Wgl400_pos2	0h:3m:52s (0h:4m:31s left)
 256 GTR+F+I+G4   485512.039  3.716       IDH_pos1+MDH_pos2	0h:3m:53s (0h:4m:30s left)
 257 GTR+F+I+G4   486062.516  17.133      CAD_pos2+IDH_pos3	0h:3m:53s (0h:4m:29s left)
 258 GTR+F+I+G4   486266.619  20.648      CAD_pos3+IDH_pos2	0h:3m:53s (0h:4m:27s left)
 259 GTR+F+I+G4   485769.692  21.681      GAPDH_pos3+MDH_pos2	0h:3m:53s (0h:4m:25s left)
 260 GTR+F+I+G4   485681.191  18.470      MDH_pos2+Wgl400_pos3	0h:3m:54s (0h:4m:24s left)
 261 GTR+F+I+G4   485567.210  43.823      CAD_pos3+MDH_pos3	0h:3m:55s (0h:4m:23s left)
 262 GTR+F+I+G4   486462.996  18.136      CAD_pos3+GAPDH_pos1	0h:3m:55s (0h:4m:21s left)
 263 GTR+F+I+G4   485532.397  3.154       MDH_pos2+Wgl400_pos1	0h:3m:55s (0h:4m:19s left)
 264 GTR+F+I+G4   485884.989  17.971      MDH_pos1+MDH_pos3	0h:3m:55s (0h:4m:17s left)
 265 GTR+F+I+G4   485500.172  4.262       CAD_pos1+IDH_pos1	0h:3m:55s (0h:4m:16s left)
 266 GTR+F+I+G4   485940.022  15.363      CAD_pos1+GAPDH_pos3	0h:3m:56s (0h:4m:15s left)
 267 GTR+F+I+G4   485553.239  4.718       CAD_pos1+Wgl400_pos1	0h:3m:56s (0h:4m:13s left)
 268 GTR+F+I+G4   485552.336  5.032       GAPDH_pos1+MDH_pos1	0h:3m:57s (0h:4m:12s left)
 269 GTR+F+I+G4   485473.772  2.017       MDH_pos2+Wgl400_pos2	0h:3m:57s (0h:4m:10s left)
 270 GTR+F+I+G4   485508.455  2.636       IDH_pos2+MDH_pos2	0h:3m:57s (0h:4m:8s left)
 271 GTR+F+I+G4   485553.664  3.252       CAD_pos2+IDH_pos1	0h:3m:58s (0h:4m:7s left)
 272 GTR+F+I+G4   485934.810  19.487      CAD_pos1+Wgl400_pos3	0h:3m:58s (0h:4m:6s left)
 273 GTR+F+I+G4   486374.594  19.379      CAD_pos3+GAPDH_pos2	0h:3m:58s (0h:4m:4s left)
 274 GTR+F+I+G4   485647.203  2.801       GAPDH_pos2+MDH_pos1	0h:3m:58s (0h:4m:3s left)
 275 GTR+F+I+G4   485960.002  14.418      CAD_pos2+GAPDH_pos3	0h:3m:58s (0h:4m:1s left)
 276 GTR+F+I+G4   485619.962  3.505       CAD_pos1+IDH_pos2	0h:3m:59s (0h:4m:0s left)
 277 GTR+F+I+G4   485815.321  17.075      MDH_pos2+MDH_pos3	0h:4m:0s (0h:3m:59s left)
 278 GTR+F+I+G4   485603.802  2.904       CAD_pos2+Wgl400_pos1	0h:4m:0s (0h:3m:57s left)
 279 GTR+F+I+G4   485529.867  4.860       CAD_pos1+Wgl400_pos2	0h:4m:0s (0h:3m:55s left)
 280 GTR+F+I+G4   485875.617  15.082      CAD_pos2+Wgl400_pos3	0h:4m:0s (0h:3m:54s left)
 281 GTR+F+I+G4   485534.976  2.558       GAPDH_pos1+MDH_pos2	0h:4m:0s (0h:3m:52s left)
 282 GTR+F+I+G4   486367.093  25.767      CAD_pos3+MDH_pos1	0h:4m:0s (0h:3m:51s left)
 283 GTR+F+I+G4   485464.998  2.367       CAD_pos2+IDH_pos2	0h:4m:0s (0h:3m:49s left)
 284 GTR+F+I+G4   485569.286  2.555       CAD_pos2+Wgl400_pos2	0h:4m:1s (0h:3m:48s left)
 285 GTR+F+I+G4   485515.120  2.351       GAPDH_pos2+MDH_pos2	0h:4m:1s (0h:3m:47s left)
 286 GTR+F+I+G4   485588.519  5.060       CAD_pos1+GAPDH_pos1	0h:4m:1s (0h:3m:45s left)
 287 GTR+F+I+G4   485856.441  18.045      CAD_pos1+MDH_pos3	0h:4m:2s (0h:3m:44s left)
 288 GTR+F+I+G4   485864.390  15.219      CAD_pos2+MDH_pos3	0h:4m:2s (0h:3m:42s left)
 289 GTR+F+I+G4   485502.040  2.795       MDH_pos1+MDH_pos2	0h:4m:2s (0h:3m:41s left)
 290 GTR+F+I+G4   485665.246  3.111       CAD_pos1+GAPDH_pos2	0h:4m:2s (0h:3m:40s left)
 291 GTR+F+I+G4   485568.361  3.296       CAD_pos2+GAPDH_pos1	0h:4m:2s (0h:3m:38s left)
 292 GTR+F+I+G4   485529.721  2.228       CAD_pos2+GAPDH_pos2	0h:4m:3s (0h:3m:37s left)
 293 GTR+F+I+G4   486204.589  12.830      CAD_pos1+CAD_pos3	0h:4m:3s (0h:3m:35s left)
 294 GTR+F+I+G4   486043.090  28.671      CAD_pos3+MDH_pos2	0h:4m:3s (0h:3m:34s left)
 295 GTR+F+I+G4   485493.360  5.642       CAD_pos1+MDH_pos1	0h:4m:3s (0h:3m:33s left)
 296 GTR+F+I+G4   486138.135  12.778      CAD_pos2+CAD_pos3	0h:4m:4s (0h:3m:31s left)
 297 GTR+F+I+G4   485544.224  2.150       CAD_pos1+CAD_pos2	0h:4m:4s (0h:3m:30s left)
 298 GTR+F+I+G4   485598.413  3.167       CAD_pos2+MDH_pos1	0h:4m:4s (0h:3m:29s left)
 299 GTR+F+I+G4   485526.073  4.059       CAD_pos1+MDH_pos2	0h:4m:4s (0h:3m:27s left)
 300 GTR+F+I+G4   485495.220  2.070       CAD_pos2+MDH_pos2	0h:4m:4s (0h:3m:26s left)
8 compatible better partition pairs found
Merging CAD_pos2+IDH_pos2 with BIC score: 485464.998 (LnL: -237583.251  df: 1175)
Merging EF1a-begin_pos2+RpS5_pos2 with BIC score: 485384.872 (LnL: -237591.393  df: 1164)
Merging MDH_pos1+Wgl400_pos2 with BIC score: 485308.079 (LnL: -237601.203  df: 1153)
Merging GAPDH_pos3+RpS5_pos3 with BIC score: 485250.672 (LnL: -237620.705  df: 1142)
Merging EF1a-begin_pos1+GAPDH_pos1 with BIC score: 485200.189 (LnL: -237643.669  df: 1131)
Merging CAD_pos1+RpS5_pos1 with BIC score: 485153.372 (LnL: -237668.466  df: 1120)
Merging COI_pos2+MDH_pos2 with BIC score: 485110.829 (LnL: -237695.400  df: 1109)
Merging IDH_pos3+MDH_pos3 with BIC score: 485078.153 (LnL: -237727.268  df: 1098)
 301 GTR+F+I+G4   492264.137  35.212      COI_pos3+EF1a-begin_pos2+RpS5_pos2	0h:4m:14s (0h:3m:32s left)
 302 GTR+F+I+G4   485941.129  15.797      EF1a-begin_pos1+EF1a-begin_pos3+GAPDH_pos1	0h:4m:19s (0h:3m:35s left)
 303 GTR+F+I+G4   491786.821  39.514      COI_pos2+COI_pos3+MDH_pos2	0h:4m:19s (0h:3m:34s left)
 304 GTR+F+I+G4   485538.106  7.521       COI_pos1+EF1a-begin_pos1+GAPDH_pos1	0h:4m:19s (0h:3m:32s left)
 305 GTR+F+I+G4   485758.610  16.034      EF1a-begin_pos2+EF1a-begin_pos3+RpS5_pos2	0h:4m:22s (0h:3m:33s left)
 306 GTR+F+I+G4   492580.562  34.204      COI_pos3+EF1a-begin_pos1+GAPDH_pos1	0h:4m:24s (0h:3m:33s left)
 307 GTR+F+I+G4   485835.400  18.094      COI_pos2+EF1a-begin_pos3+MDH_pos2	0h:4m:24s (0h:3m:32s left)
 308 GTR+F+I+G4   485519.868  7.144       COI_pos1+COI_pos2+MDH_pos2	0h:4m:28s (0h:3m:33s left)
 309 GTR+F+I+G4   485469.119  6.956       COI_pos1+EF1a-begin_pos2+RpS5_pos2	0h:4m:30s (0h:3m:33s left)
 310 GTR+F+I+G4   485190.938  3.179       EF1a-begin_pos1+EF1a-begin_pos2+GAPDH_pos1+RpS5_pos2	0h:4m:31s (0h:3m:33s left)
 311 GTR+F+I+G4   485251.717  3.963       COI_pos2+EF1a-begin_pos1+GAPDH_pos1+MDH_pos2	0h:4m:31s (0h:3m:31s left)
 312 GTR+F+I+G4   485096.821  1.860       COI_pos2+EF1a-begin_pos2+MDH_pos2+RpS5_pos2	0h:4m:36s (0h:3m:33s left)
 313 GTR+F+I+G4   492016.200  70.458      COI_pos3+GAPDH_pos3+RpS5_pos3	0h:4m:38s (0h:3m:33s left)
 314 GTR+F+I+G4   491218.852  97.230      COI_pos3+IDH_pos3+MDH_pos3	0h:4m:39s (0h:3m:32s left)
 315 GTR+F+I+G4   485693.437  46.794      EF1a-begin_pos3+IDH_pos3+MDH_pos3	0h:4m:44s (0h:3m:35s left)
 316 GTR+F+I+G4   485411.357  28.052      EF1a-begin_pos3+MDH_pos1+Wgl400_pos2	0h:4m:45s (0h:3m:34s left)
 317 GTR+F+I+G4   490467.238  71.823      COI_pos3+MDH_pos1+Wgl400_pos2	0h:4m:50s (0h:3m:35s left)
 318 GTR+F+I+G4   486246.229  28.646      COI_pos1+IDH_pos3+MDH_pos3	0h:4m:54s (0h:3m:37s left)
 319 GTR+F+I+G4   485171.914  9.603       COI_pos1+MDH_pos1+Wgl400_pos2	0h:4m:54s (0h:3m:35s left)
 320 GTR+F+I+G4   485419.317  44.358      EF1a-begin_pos3+GAPDH_pos3+RpS5_pos3	0h:4m:55s (0h:3m:35s left)
 321 GTR+F+I+G4   490591.979  78.858      CAD_pos1+COI_pos3+RpS5_pos1	0h:4m:55s (0h:3m:33s left)
 322 GTR+F+I+G4   485226.100  4.488       EF1a-begin_pos1+GAPDH_pos1+Wgl400_pos1	0h:4m:59s (0h:3m:34s left)
 323 GTR+F+I+G4   486257.731  24.285      COI_pos1+GAPDH_pos3+RpS5_pos3	0h:5m:1s (0h:3m:34s left)
 324 GTR+F+I+G4   485720.135  20.958      CAD_pos2+EF1a-begin_pos3+IDH_pos2	0h:5m:2s (0h:3m:33s left)
 325 GTR+F+I+G4   486695.231  18.383      EF1a-begin_pos1+GAPDH_pos1+IDH_pos3+MDH_pos3	0h:5m:4s (0h:3m:33s left)
 326 GTR+F+I+G4   485081.347  5.181       EF1a-begin_pos1+GAPDH_pos1+IDH_pos1	0h:5m:6s (0h:3m:33s left)
 327 GTR+F+I+G4   485230.205  1.824       EF1a-begin_pos2+RpS5_pos2+Wgl400_pos1	0h:5m:6s (0h:3m:31s left)
 328 GTR+F+I+G4   485694.592  21.537      CAD_pos1+EF1a-begin_pos3+RpS5_pos1	0h:5m:7s (0h:3m:31s left)
 329 GTR+F+I+G4   485139.082  4.698       EF1a-begin_pos1+GAPDH_pos1+MDH_pos1+Wgl400_pos2	0h:5m:11s (0h:3m:31s left)
 330 GTR+F+I+G4   489670.261  83.754      CAD_pos2+COI_pos3+IDH_pos2	0h:5m:11s (0h:3m:30s left)
 331 GTR+F+I+G4   485114.704  3.992       EF1a-begin_pos1+GAPDH_pos1+GAPDH_pos2	0h:5m:12s (0h:3m:29s left)
 332 GTR+F+I+G4   486441.101  18.975      EF1a-begin_pos2+IDH_pos3+MDH_pos3+RpS5_pos2	0h:5m:13s (0h:3m:28s left)
 333 GTR+F+I+G4   485218.452  3.017       EF1a-begin_pos2+IDH_pos1+RpS5_pos2	0h:5m:15s (0h:3m:28s left)
 334 GTR+F+I+G4   485230.584  2.922       COI_pos2+MDH_pos2+Wgl400_pos1	0h:5m:17s (0h:3m:28s left)
 335 GTR+F+I+G4   485227.749  2.324       EF1a-begin_pos2+MDH_pos1+RpS5_pos2+Wgl400_pos2	0h:5m:17s (0h:3m:26s left)
 336 GTR+F+I+G4   485053.120  1.338       EF1a-begin_pos2+GAPDH_pos2+RpS5_pos2	0h:5m:21s (0h:3m:27s left)
 337 GTR+F+I+G4   485347.352  9.901       CAD_pos1+COI_pos1+RpS5_pos1	0h:5m:21s (0h:3m:26s left)
 338 GTR+F+I+G4   486677.363  14.292      CAD_pos3+EF1a-begin_pos1+GAPDH_pos1	0h:5m:22s (0h:3m:25s left)
 339 GTR+F+I+G4   486563.992  20.544      EF1a-begin_pos1+GAPDH_pos1+GAPDH_pos3+RpS5_pos3	0h:5m:24s (0h:3m:24s left)
 340 GTR+F+I+G4   485584.381  8.109       CAD_pos2+COI_pos1+IDH_pos2	0h:5m:25s (0h:3m:23s left)
 341 GTR+F+I+G4   485204.223  4.273       COI_pos2+IDH_pos1+MDH_pos2	0h:5m:26s (0h:3m:22s left)
 342 GTR+F+I+G4   485592.832  13.704      EF1a-begin_pos1+GAPDH_pos1+Wgl400_pos3	0h:5m:27s (0h:3m:22s left)
 343 GTR+F+I+G4   486403.112  18.595      COI_pos2+IDH_pos3+MDH_pos2+MDH_pos3	0h:5m:29s (0h:3m:21s left)
 344 GTR+F+I+G4   485248.172  2.870       COI_pos2+MDH_pos1+MDH_pos2+Wgl400_pos2	0h:5m:31s (0h:3m:21s left)
 345 GTR+F+I+G4   486285.979  20.056      EF1a-begin_pos2+GAPDH_pos3+RpS5_pos2+RpS5_pos3	0h:5m:32s (0h:3m:20s left)
 346 GTR+F+I+G4   485708.694  19.394      EF1a-begin_pos2+RpS5_pos2+Wgl400_pos3	0h:5m:34s (0h:3m:20s left)
 347 GTR+F+I+G4   486359.310  15.798      CAD_pos3+EF1a-begin_pos2+RpS5_pos2	0h:5m:35s (0h:3m:19s left)
 348 GTR+F+I+G4   485284.058  4.616       CAD_pos2+EF1a-begin_pos1+GAPDH_pos1+IDH_pos2	0h:5m:35s (0h:3m:17s left)
 349 GTR+F+I+G4   485077.566  2.921       COI_pos2+GAPDH_pos2+MDH_pos2	0h:5m:38s (0h:3m:17s left)
 350 GTR+F+I+G4   485204.538  5.840       CAD_pos1+EF1a-begin_pos1+GAPDH_pos1+RpS5_pos1	0h:5m:40s (0h:3m:17s left)
 351 GTR+F+I+G4   485093.437  2.208       CAD_pos2+EF1a-begin_pos2+IDH_pos2+RpS5_pos2	0h:5m:43s (0h:3m:17s left)
 352 GTR+F+I+G4   486136.481  20.357      COI_pos2+GAPDH_pos3+MDH_pos2+RpS5_pos3	0h:5m:43s (0h:3m:16s left)
 353 GTR+F+I+G4   486377.026  19.914      CAD_pos3+COI_pos2+MDH_pos2	0h:5m:44s (0h:3m:14s left)
 354 GTR+F+I+G4   485112.313  3.890       MDH_pos1+Wgl400_pos1+Wgl400_pos2	0h:5m:46s (0h:3m:14s left)
 355 GTR+F+I+G4   485625.222  8.376       COI_pos2+MDH_pos2+Wgl400_pos3	0h:5m:47s (0h:3m:13s left)
 356 GTR+F+I+G4   485960.577  34.555      IDH_pos3+MDH_pos3+Wgl400_pos1	0h:5m:47s (0h:3m:12s left)
 357 GTR+F+I+G4   485100.118  3.016       CAD_pos2+COI_pos2+IDH_pos2+MDH_pos2	0h:5m:48s (0h:3m:11s left)
 358 GTR+F+I+G4   485681.908  25.940      IDH_pos1+IDH_pos3+MDH_pos3	0h:5m:48s (0h:3m:9s left)
 359 GTR+F+I+G4   485275.940  3.313       CAD_pos1+EF1a-begin_pos2+RpS5_pos1+RpS5_pos2	0h:5m:50s (0h:3m:9s left)
 360 GTR+F+I+G4   485783.981  32.942      GAPDH_pos3+RpS5_pos3+Wgl400_pos1	0h:5m:51s (0h:3m:8s left)
 361 GTR+F+I+G4   485267.533  4.313       CAD_pos1+COI_pos2+MDH_pos2+RpS5_pos1	0h:5m:51s (0h:3m:6s left)
 362 GTR+F+I+G4   485837.313  26.105      GAPDH_pos2+IDH_pos3+MDH_pos3	0h:5m:51s (0h:3m:5s left)
 363 GTR+F+I+G4   486028.221  25.291      IDH_pos3+MDH_pos1+MDH_pos3+Wgl400_pos2	0h:5m:51s (0h:3m:3s left)
 364 GTR+F+I+G4   485038.915  4.355       IDH_pos1+MDH_pos1+Wgl400_pos2	0h:5m:52s (0h:3m:2s left)
 365 GTR+F+I+G4   485199.923  3.473       GAPDH_pos2+MDH_pos1+Wgl400_pos2	0h:5m:53s (0h:3m:2s left)
 366 GTR+F+I+G4   485176.443  45.656      CAD_pos3+IDH_pos3+MDH_pos3	0h:5m:54s (0h:3m:1s left)
 367 GTR+F+I+G4   485236.483  47.626      IDH_pos3+MDH_pos3+Wgl400_pos3	0h:5m:55s (0h:3m:0s left)
 368 GTR+F+I+G4   485866.200  27.680      GAPDH_pos3+MDH_pos1+RpS5_pos3+Wgl400_pos2	0h:5m:56s (0h:2m:59s left)
 369 GTR+F+I+G4   486136.828  20.314      CAD_pos3+MDH_pos1+Wgl400_pos2	0h:5m:57s (0h:2m:58s left)
 370 GTR+F+I+G4   485130.052  45.515      GAPDH_pos3+IDH_pos3+MDH_pos3+RpS5_pos3	0h:5m:57s (0h:2m:56s left)
 371 GTR+F+I+G4   485593.079  28.083      GAPDH_pos3+IDH_pos1+RpS5_pos3	0h:5m:58s (0h:2m:55s left)
 372 GTR+F+I+G4   485116.994  4.938       CAD_pos1+RpS5_pos1+Wgl400_pos1	0h:5m:58s (0h:2m:54s left)
 373 GTR+F+I+G4   485221.173  3.529       CAD_pos2+IDH_pos2+Wgl400_pos1	0h:5m:59s (0h:2m:53s left)
 374 GTR+F+I+G4   485422.743  17.883      MDH_pos1+Wgl400_pos2+Wgl400_pos3	0h:5m:59s (0h:2m:51s left)
 375 GTR+F+I+G4   485693.552  27.161      GAPDH_pos2+GAPDH_pos3+RpS5_pos3	0h:6m:1s (0h:2m:51s left)
 376 GTR+F+I+G4   485160.370  3.237       CAD_pos2+IDH_pos1+IDH_pos2	0h:6m:2s (0h:2m:50s left)
 377 GTR+F+I+G4   486180.282  22.876      CAD_pos1+IDH_pos3+MDH_pos3+RpS5_pos1	0h:6m:2s (0h:2m:49s left)
 378 GTR+F+I+G4   485155.788  44.365      GAPDH_pos3+RpS5_pos3+Wgl400_pos3	0h:6m:3s (0h:2m:48s left)
 379 GTR+F+I+G4   486107.223  18.004      CAD_pos2+IDH_pos2+IDH_pos3+MDH_pos3	0h:6m:3s (0h:2m:46s left)
 380 GTR+F+I+G4   485061.805  5.443       CAD_pos1+IDH_pos1+RpS5_pos1	0h:6m:3s (0h:2m:45s left)
 381 GTR+F+I+G4   485485.700  41.556      CAD_pos3+GAPDH_pos3+RpS5_pos3	0h:6m:3s (0h:2m:44s left)
 382 GTR+F+I+G4   485074.354  2.458       CAD_pos2+GAPDH_pos2+IDH_pos2	0h:6m:5s (0h:2m:43s left)
 383 GTR+F+I+G4   485272.521  3.235       CAD_pos2+IDH_pos2+MDH_pos1+Wgl400_pos2	0h:6m:7s (0h:2m:43s left)
 384 GTR+F+I+G4   486278.747  18.226      CAD_pos1+CAD_pos3+RpS5_pos1	0h:6m:7s (0h:2m:41s left)
 385 GTR+F+I+G4   485216.947  4.736       CAD_pos1+GAPDH_pos2+RpS5_pos1	0h:6m:8s (0h:2m:40s left)
 386 GTR+F+I+G4   485074.340  6.428       CAD_pos1+MDH_pos1+RpS5_pos1+Wgl400_pos2	0h:6m:8s (0h:2m:39s left)
 387 GTR+F+I+G4   485662.001  15.732      CAD_pos1+RpS5_pos1+Wgl400_pos3	0h:6m:10s (0h:2m:38s left)
 388 GTR+F+I+G4   486048.531  14.476      CAD_pos2+CAD_pos3+IDH_pos2	0h:6m:11s (0h:2m:37s left)
 389 GTR+F+I+G4   486020.000  20.061      CAD_pos2+GAPDH_pos3+IDH_pos2+RpS5_pos3	0h:6m:11s (0h:2m:36s left)
 390 GTR+F+I+G4   486121.411  21.410      CAD_pos1+GAPDH_pos3+RpS5_pos1+RpS5_pos3	0h:6m:11s (0h:2m:35s left)
 391 GTR+F+I+G4   485273.566  3.954       CAD_pos1+CAD_pos2+IDH_pos2+RpS5_pos1	0h:6m:14s (0h:2m:35s left)
 392 GTR+F+I+G4   485636.533  9.802       CAD_pos2+IDH_pos2+Wgl400_pos3	0h:6m:15s (0h:2m:34s left)
2 compatible better partition pairs found
Merging IDH_pos1+MDH_pos1+Wgl400_pos2 with BIC score: 485038.915 (LnL: -237755.855  df: 1087)
Merging EF1a-begin_pos2+GAPDH_pos2+RpS5_pos2 with BIC score: 485013.882 (LnL: -237791.544  df: 1076)
 393 GTR+F+I+G4   485029.028  2.761       COI_pos2+EF1a-begin_pos2+GAPDH_pos2+MDH_pos2+RpS5_pos2	0h:6m:26s (0h:2m:37s left)
 394 GTR+F+I+G4   485139.033  3.134       EF1a-begin_pos1+EF1a-begin_pos2+GAPDH_pos1+GAPDH_pos2+RpS5_pos2	0h:6m:26s (0h:2m:35s left)
 395 GTR+F+I+G4   491474.703  49.021      COI_pos3+IDH_pos1+MDH_pos1+Wgl400_pos2	0h:6m:27s (0h:2m:35s left)
 396 GTR+F+I+G4   485592.740  6.509       COI_pos1+EF1a-begin_pos2+GAPDH_pos2+RpS5_pos2	0h:6m:28s (0h:2m:34s left)
 397 GTR+F+I+G4   485192.111  2.125       EF1a-begin_pos2+GAPDH_pos2+RpS5_pos2+Wgl400_pos1	0h:6m:32s (0h:2m:34s left)
 398 GTR+F+I+G4   485880.356  14.050      EF1a-begin_pos2+EF1a-begin_pos3+GAPDH_pos2+RpS5_pos2	0h:6m:32s (0h:2m:32s left)
 399 GTR+F+I+G4   492664.440  29.312      COI_pos3+EF1a-begin_pos2+GAPDH_pos2+RpS5_pos2	0h:6m:34s (0h:2m:32s left)
 400 GTR+F+I+G4   485450.527  21.205      EF1a-begin_pos3+IDH_pos1+MDH_pos1+Wgl400_pos2	0h:6m:37s (0h:2m:31s left)
 401 GTR+F+I+G4   485242.109  9.306       COI_pos1+IDH_pos1+MDH_pos1+Wgl400_pos2	0h:6m:37s (0h:2m:30s left)
 402 GTR+F+I+G4   486585.485  16.355      EF1a-begin_pos2+GAPDH_pos2+IDH_pos3+MDH_pos3+RpS5_pos2	0h:6m:39s (0h:2m:29s left)
 403 GTR+F+I+G4   485078.409  5.102       EF1a-begin_pos1+GAPDH_pos1+IDH_pos1+MDH_pos1+Wgl400_pos2	0h:6m:43s (0h:2m:30s left)
 404 GTR+F+I+G4   486421.284  17.064      EF1a-begin_pos2+GAPDH_pos2+GAPDH_pos3+RpS5_pos2+RpS5_pos3	0h:6m:45s (0h:2m:29s left)
 405 GTR+F+I+G4   485281.862  3.226       EF1a-begin_pos2+GAPDH_pos2+IDH_pos1+MDH_pos1+RpS5_pos2+Wgl400_pos2	0h:6m:46s (0h:2m:28s left)
 406 GTR+F+I+G4   486437.592  13.391      CAD_pos3+EF1a-begin_pos2+GAPDH_pos2+RpS5_pos2	0h:6m:49s (0h:2m:28s left)
 407 GTR+F+I+G4   485239.582  3.701       COI_pos2+IDH_pos1+MDH_pos1+MDH_pos2+Wgl400_pos2	0h:6m:50s (0h:2m:27s left)
 408 GTR+F+I+G4   485677.998  6.753       EF1a-begin_pos2+GAPDH_pos2+RpS5_pos2+Wgl400_pos3	0h:6m:51s (0h:2m:26s left)
 409 GTR+F+I+G4   485050.696  4.297       IDH_pos1+MDH_pos1+Wgl400_pos1+Wgl400_pos2	0h:6m:52s (0h:2m:25s left)
 410 GTR+F+I+G4   485029.822  2.606       CAD_pos2+EF1a-begin_pos2+GAPDH_pos2+IDH_pos2+RpS5_pos2	0h:6m:52s (0h:2m:23s left)
 411 GTR+F+I+G4   485283.939  2.708       CAD_pos1+EF1a-begin_pos2+GAPDH_pos2+RpS5_pos1+RpS5_pos2	0h:6m:52s (0h:2m:22s left)
 412 GTR+F+I+G4   486143.843  20.248      IDH_pos1+IDH_pos3+MDH_pos1+MDH_pos3+Wgl400_pos2	0h:6m:55s (0h:2m:22s left)
 413 GTR+F+I+G4   485213.586  3.945       CAD_pos2+IDH_pos1+IDH_pos2+MDH_pos1+Wgl400_pos2	0h:6m:55s (0h:2m:20s left)
 414 GTR+F+I+G4   485429.050  15.975      IDH_pos1+MDH_pos1+Wgl400_pos2+Wgl400_pos3	0h:6m:56s (0h:2m:19s left)
 415 GTR+F+I+G4   486214.477  16.372      CAD_pos3+IDH_pos1+MDH_pos1+Wgl400_pos2	0h:6m:57s (0h:2m:18s left)
 416 GTR+F+I+G4   485026.772  6.228       CAD_pos1+IDH_pos1+MDH_pos1+RpS5_pos1+Wgl400_pos2	0h:7m:0s (0h:2m:18s left)
 417 GTR+F+I+G4   486016.465  22.479      GAPDH_pos3+IDH_pos1+MDH_pos1+RpS5_pos3+Wgl400_pos2	0h:7m:1s (0h:2m:17s left)
Agglomerative model selection: ((CAD_pos1,RpS5_pos1)6:485153,(CAD_pos2,IDH_pos2)1:485465,CAD_pos3,COI_pos1,(COI_pos2,MDH_pos2)7:485111,COI_pos3,(EF1a-begin_pos1,GAPDH_pos1)5:485200,((EF1a-begin_pos2,RpS5_pos2)2:485385,GAPDH_pos2)10:485014,EF1a-begin_pos3,(GAPDH_pos3,RpS5_pos3)4:485251,(IDH_pos1,(MDH_pos1,Wgl400_pos2)3:485308)9:485039,(IDH_pos3,MDH_pos3)8:485078,Wgl400_pos1,Wgl400_pos3)
Merging into 14 partitions...
 418 GTR+F+R6     6772.967    COI_pos2+MDH_pos2	0h:10m:25s (0h:3m:22s left)
 419 K3Pu+F+R5    6498.238    EF1a-begin_pos2+GAPDH_pos2+RpS5_pos2	0h:10m:56s (0h:3m:29s left)
 420 SYM+R6       77386.271   GAPDH_pos3+RpS5_pos3	0h:13m:31s (0h:4m:17s left)
 421 GTR+F+I+G4   9495.618    CAD_pos1+RpS5_pos1	0h:14m:19s (0h:4m:29s left)
 422 GTR+F+I+G4   74404.236   EF1a-begin_pos3	0h:14m:44s (0h:4m:34s left)
 423 TIM3+F+R3    6585.381    CAD_pos2+IDH_pos2	0h:15m:1s (0h:4m:36s left)
 424 GTR+F+I+G4   31094.686   Wgl400_pos3	0h:15m:28s (0h:4m:42s left)
 425 GTR+F+I+G4   4256.532    Wgl400_pos1	0h:15m:53s (0h:4m:47s left)
 426 TIM2+F+I+G4  26303.701   CAD_pos3	0h:16m:0s (0h:4m:46s left)
 427 TIM+F+R6     9580.600    EF1a-begin_pos1+GAPDH_pos1	0h:16m:6s (0h:4m:45s left)
 428 GTR+F+I+G4   22457.662   COI_pos1	0h:16m:13s (0h:4m:44s left)
WARNING: Log-likelihood -5534.09 of TPM3u+F+R6 worse than TPM3u+F+R5 -5525.98
WARNING: Log-likelihood -35113.5 of SYM+R7 worse than SYM+R6 -35109
WARNING: Log-likelihood -5534.09 of TPM3+F+R6 worse than TPM3+F+R5 -5525.98
WARNING: Log-likelihood -35052.3 of TVM+F+R7 worse than TVM+F+R6 -35048.3
WARNING: Log-likelihood -5524.79 of TPM2u+F+R6 worse than TPM2u+F+R5 -5519.19
 429 GTR+F+I+G4   120317.091  COI_pos3	0h:18m:6s (0h:5m:14s left)
WARNING: Log-likelihood -5524.79 of TPM2+F+R6 worse than TPM2+F+R5 -5519.19
WARNING: Log-likelihood -5529.83 of K3Pu+F+R6 worse than K3Pu+F+R5 -5522.99
WARNING: Log-likelihood -5539.6 of HKY+F+R6 worse than HKY+F+R5 -5532.54
WARNING: Log-likelihood -35321.2 of TIM3e+R7 worse than TIM3e+R6 -35318.9
 430 GTR+F+R5     10909.823   IDH_pos1+MDH_pos1+Wgl400_pos2	0h:20m:52s (0h:5m:58s left)
WARNING: Log-likelihood -35190.2 of TIM2e+R7 worse than TIM2e+R6 -35185.6
WARNING: Log-likelihood -35354.5 of TIMe+R7 worse than TIMe+R6 -35352.8
WARNING: Log-likelihood -35223.3 of TPM3u+F+R7 worse than TPM3u+F+R6 -35221.4
WARNING: Log-likelihood -35223.3 of TPM3+F+R7 worse than TPM3+F+R6 -35221.4
WARNING: Log-likelihood -35071 of TPM2u+F+R7 worse than TPM2u+F+R6 -35067.2
WARNING: Log-likelihood -35071 of TPM2+F+R7 worse than TPM2+F+R6 -35067.2
WARNING: Log-likelihood -35206.2 of K3Pu+F+R7 worse than K3Pu+F+R6 -35203.8
WARNING: Log-likelihood -35393.7 of TNe+R7 worse than TNe+R6 -35392.2
WARNING: Log-likelihood -35238.7 of HKY+F+R7 worse than HKY+F+R6 -35236.4
WARNING: Log-likelihood -38530.7 of JC+R7 worse than JC+R6 -38529.3
 431 GTR+F+R6     70126.622   IDH_pos3+MDH_pos3	0h:35m:42s (0h:10m:6s left)
Best partition model BIC score: 484777.408 (LnL: -237524.308  df:1110)
Partition information was printed to output.best_scheme.nex
Partition information in Raxml format was printed to output.best_scheme

All model information printed to output.model.gz
CPU time for ModelFinder: 7553.620 seconds (2h:5m:53s)
Wall-clock time for ModelFinder: 2182.030 seconds (0h:36m:22s)
Generating 1000 samples for ultrafast bootstrap (seed: 260198)...

NOTE: 327 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -246069.837
Current log-likelihood at step 1: -238473.405
Current log-likelihood at step 2: -237640.500
Current log-likelihood at step 3: -237598.799
Current log-likelihood at step 4: -237577.959
Current log-likelihood at step 5: -237572.719
Current log-likelihood at step 6: -237570.293
Current log-likelihood at step 7: -237568.517
Current log-likelihood at step 8: -237567.145
Current log-likelihood at step 9: -237566.079
Current log-likelihood at step 10: -237565.207
Current log-likelihood at step 11: -237564.504
Current log-likelihood at step 12: -237563.920
Current log-likelihood at step 13: -237563.440
Current log-likelihood at step 14: -237563.030
Current log-likelihood at step 15: -237562.675
Current log-likelihood at step 16: -237562.363
Current log-likelihood at step 17: -237562.085
Current log-likelihood at step 18: -237561.835
Current log-likelihood at step 19: -237561.584
Current log-likelihood at step 20: -237561.362
Current log-likelihood at step 21: -237561.152
Current log-likelihood at step 22: -237560.948
Current log-likelihood at step 23: -237560.756
Current log-likelihood at step 24: -237560.562
Current log-likelihood at step 25: -237560.375
Current log-likelihood at step 26: -237560.195
Current log-likelihood at step 27: -237560.021
Current log-likelihood at step 28: -237559.851
Current log-likelihood at step 29: -237559.689
Current log-likelihood at step 30: -237559.538
Current log-likelihood at step 31: -237559.389
Current log-likelihood at step 32: -237559.239
Current log-likelihood at step 33: -237559.096
Current log-likelihood at step 34: -237558.929
Current log-likelihood at step 35: -237558.527
Current log-likelihood at step 36: -237557.467
Current log-likelihood at step 37: -237557.280
Current log-likelihood at step 38: -237557.173
Current log-likelihood at step 39: -237557.069
Current log-likelihood at step 40: -237556.967
Current log-likelihood at step 41: -237556.871
Partition-specific rates:  0.190 0.065 1.833 0.287 0.027 7.588 0.047 0.019 1.020 1.301 0.092 1.481 0.136 1.505
Parameters optimization took 40 rounds (113.959 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

Computing ML distances based on estimated model parameters... 56.334 sec
WARNING: Some pairwise ML distances are too long (saturated)
Computing BIONJ tree...
0.320 seconds
Log-likelihood of BIONJ tree: -264517.141
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------

Do NNI search on 2 best initial trees
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237535.817
Current log-likelihood at step 1: -237535.533
Current log-likelihood at step 2: -237535.386
Current log-likelihood at step 3: -237535.268
Current log-likelihood at step 4: -237535.160
Current log-likelihood at step 5: -237535.060
Parameters optimization took 4 rounds (11.323 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 1: -237535.060
Finish initializing candidate tree set (4)
Current best tree score: -237535.060 / CPU time: 168.380
Number of iterations: 2
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 10 / LogL: -239085.196 / Time: 0h:8m:28s
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237457.483
Current log-likelihood at step 1: -237455.889
Current log-likelihood at step 2: -237455.375
Current log-likelihood at step 3: -237454.245
Current log-likelihood at step 4: -237453.802
Current log-likelihood at step 5: -237453.539
Current log-likelihood at step 6: -237453.318
Current log-likelihood at step 7: -237453.133
Current log-likelihood at step 8: -237452.973
Current log-likelihood at step 9: -237452.824
Current log-likelihood at step 10: -237452.698
Current log-likelihood at step 11: -237452.583
Current log-likelihood at step 12: -237452.483
Current log-likelihood at step 13: -237452.366
Current log-likelihood at step 14: -237452.277
Parameters optimization took 13 rounds (33.799 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 12: -237452.277
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237451.045
Current log-likelihood at step 1: -237450.077
Current log-likelihood at step 2: -237449.788
Current log-likelihood at step 3: -237449.667
Current log-likelihood at step 4: -237449.566
Current log-likelihood at step 5: -237449.499
Parameters optimization took 4 rounds (12.317 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 16: -237449.499
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237414.471
Current log-likelihood at step 1: -237414.075
Current log-likelihood at step 2: -237413.971
Current log-likelihood at step 3: -237413.876
Parameters optimization took 2 rounds (6.291 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 18: -237413.876
Iteration 20 / LogL: -237437.187 / Time: 0h:11m:40s
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237403.991
Current log-likelihood at step 1: -237397.318
Current log-likelihood at step 2: -237397.201
Current log-likelihood at step 3: -237397.128
Parameters optimization took 2 rounds (8.104 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 26: -237397.128
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237376.770
Current log-likelihood at step 1: -237375.763
Current log-likelihood at step 2: -237375.633
Current log-likelihood at step 3: -237375.579
Parameters optimization took 2 rounds (7.883 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 30: -237375.579
Iteration 30 / LogL: -237375.579 / Time: 0h:14m:4s (0h:48m:30s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237373.878
Current log-likelihood at step 1: -237372.930
Current log-likelihood at step 2: -237372.834
Parameters optimization took 1 rounds (6.211 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 35: -237372.834
Iteration 40 / LogL: -237396.221 / Time: 0h:16m:18s (0h:39m:42s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237350.522
Current log-likelihood at step 1: -237349.726
Current log-likelihood at step 2: -237349.676
Parameters optimization took 1 rounds (5.685 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 47: -237349.676
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237303.124
Current log-likelihood at step 1: -237302.041
Current log-likelihood at step 2: -237301.974
Parameters optimization took 1 rounds (6.495 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 48: -237301.974
Iteration 50 / LogL: -237356.175 / Time: 0h:18m:40s (0h:37m:21s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237278.398
Current log-likelihood at step 1: -237278.072
Current log-likelihood at step 2: -237277.995
Parameters optimization took 1 rounds (5.804 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 59: -237277.995
Iteration 60 / LogL: -237352.530 / Time: 0h:20m:59s (0h:35m:12s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237272.536
Current log-likelihood at step 1: -237271.806
Current log-likelihood at step 2: -237271.753
Parameters optimization took 1 rounds (6.362 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 68: -237271.753
Iteration 70 / LogL: -237336.391 / Time: 0h:23m:11s (0h:32m:56s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237256.869
Current log-likelihood at step 1: -237256.104
Current log-likelihood at step 2: -237256.052
Parameters optimization took 1 rounds (5.636 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 75: -237256.052
Iteration 80 / LogL: -237315.437 / Time: 0h:25m:25s (0h:30m:34s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237254.775
Current log-likelihood at step 1: -237252.944
Current log-likelihood at step 2: -237252.820
Current log-likelihood at step 3: -237252.761
Parameters optimization took 2 rounds (8.509 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 84: -237252.761
Iteration 90 / LogL: -237294.629 / Time: 0h:27m:40s (0h:29m:13s left)
Iteration 100 / LogL: -237293.756 / Time: 0h:29m:48s (0h:25m:17s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237245.242
Current log-likelihood at step 1: -237244.705
Current log-likelihood at step 2: -237243.417
Current log-likelihood at step 3: -237243.386
Parameters optimization took 2 rounds (9.456 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 104: -237243.386
Iteration 110 / LogL: -237259.847 / Time: 0h:32m:10s (0h:27m:44s left)
Iteration 120 / LogL: -237249.499 / Time: 0h:34m:21s (0h:24m:15s left)
Iteration 130 / LogL: -237250.879 / Time: 0h:36m:36s (0h:20m:59s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237240.130
Current log-likelihood at step 1: -237239.745
Current log-likelihood at step 2: -237239.655
Parameters optimization took 1 rounds (5.108 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 135: -237239.655
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237231.362
Current log-likelihood at step 1: -237230.927
Current log-likelihood at step 2: -237230.884
Parameters optimization took 1 rounds (5.839 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 138: -237230.884
Iteration 140 / LogL: -237244.878 / Time: 0h:39m:3s (0h:27m:32s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237226.450
Current log-likelihood at step 1: -237226.283
Current log-likelihood at step 2: -237226.262
Parameters optimization took 1 rounds (4.559 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 142: -237226.262
Iteration 150 / LogL: -237247.343 / Time: 0h:41m:14s (0h:25m:27s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237214.554
Current log-likelihood at step 1: -237214.141
Current log-likelihood at step 2: -237214.096
Parameters optimization took 1 rounds (5.960 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 154: -237214.096
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237213.061
Current log-likelihood at step 1: -237212.817
Current log-likelihood at step 2: -237212.786
Parameters optimization took 1 rounds (6.226 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 160: -237212.786
Iteration 160 / LogL: -237212.786 / Time: 0h:43m:32s (0h:27m:22s left)
Iteration 170 / LogL: -237237.125 / Time: 0h:45m:34s (0h:24m:16s left)
Iteration 180 / LogL: -237264.354 / Time: 0h:47m:37s (0h:21m:17s left)
Iteration 190 / LogL: -237244.221 / Time: 0h:49m:45s (0h:18m:25s left)
Iteration 200 / LogL: -237283.803 / Time: 0h:51m:43s (0h:15m:35s left)
Iteration 210 / LogL: -237225.106 / Time: 0h:53m:47s (0h:12m:52s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237206.888
Current log-likelihood at step 1: -237206.566
Current log-likelihood at step 2: -237206.516
Parameters optimization took 1 rounds (5.711 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 215: -237206.516
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237204.576
Current log-likelihood at step 1: -237203.995
Current log-likelihood at step 2: -237203.894
Current log-likelihood at step 3: -237203.827
Parameters optimization took 2 rounds (9.181 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 218: -237203.827
Iteration 220 / LogL: -237217.849 / Time: 0h:56m:9s (0h:25m:7s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237203.500
Current log-likelihood at step 1: -237203.055
Current log-likelihood at step 2: -237203.017
Parameters optimization took 1 rounds (5.741 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 224: -237203.017
Iteration 230 / LogL: -237222.766 / Time: 0h:58m:15s (0h:23m:54s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237201.458
Current log-likelihood at step 1: -237201.019
Current log-likelihood at step 2: -237200.928
Parameters optimization took 1 rounds (6.157 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 237: -237200.928
Iteration 240 / LogL: -237217.721 / Time: 1h:0m:26s (0h:24m:31s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237198.073
Current log-likelihood at step 1: -237196.717
Current log-likelihood at step 2: -237196.466
Current log-likelihood at step 3: -237196.420
Parameters optimization took 2 rounds (8.718 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 246: -237196.420
Iteration 250 / LogL: -237220.824 / Time: 1h:2m:35s (0h:24m:7s left)
Iteration 260 / LogL: -237223.628 / Time: 1h:4m:41s (0h:21m:28s left)
Iteration 270 / LogL: -237287.869 / Time: 1h:6m:52s (0h:18m:53s left)
Iteration 280 / LogL: -237205.367 / Time: 1h:8m:55s (0h:16m:18s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237195.863
Current log-likelihood at step 1: -237195.590
Current log-likelihood at step 2: -237195.563
Parameters optimization took 1 rounds (4.386 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 288: -237195.563
Iteration 290 / LogL: -237231.522 / Time: 1h:11m:10s (0h:24m:8s left)
Iteration 300 / LogL: -237241.463 / Time: 1h:13m:17s (0h:21m:34s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237195.445
Current log-likelihood at step 1: -237195.183
Current log-likelihood at step 2: -237195.160
Parameters optimization took 1 rounds (6.410 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 302: -237195.160
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237191.456
Current log-likelihood at step 1: -237191.252
Current log-likelihood at step 2: -237191.220
Parameters optimization took 1 rounds (5.771 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 304: -237191.220
Iteration 310 / LogL: -237281.151 / Time: 1h:15m:39s (0h:23m:0s left)
Iteration 320 / LogL: -237218.667 / Time: 1h:17m:50s (0h:20m:29s left)
Iteration 330 / LogL: -237207.459 / Time: 1h:20m:4s (0h:18m:0s left)
Iteration 340 / LogL: -237200.045 / Time: 1h:22m:9s (0h:15m:30s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237189.889
Current log-likelihood at step 1: -237189.703
Current log-likelihood at step 2: -237189.685
Parameters optimization took 1 rounds (5.762 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 348: -237189.685
Iteration 350 / LogL: -237259.911 / Time: 1h:24m:26s (0h:23m:42s left)
Iteration 360 / LogL: -237193.098 / Time: 1h:26m:35s (0h:21m:13s left)
Iteration 370 / LogL: -237240.462 / Time: 1h:28m:49s (0h:18m:46s left)
Iteration 380 / LogL: -237198.269 / Time: 1h:31m:4s (0h:16m:20s left)
Iteration 390 / LogL: -237217.244 / Time: 1h:33m:12s (0h:13m:53s left)
Iteration 400 / LogL: -237197.868 / Time: 1h:35m:26s (0h:11m:28s left)
Iteration 410 / LogL: -237239.306 / Time: 1h:37m:33s (0h:9m:3s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237189.080
Current log-likelihood at step 1: -237188.955
Current log-likelihood at step 2: -237188.927
Parameters optimization took 1 rounds (4.993 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 411: -237188.927
Iteration 420 / LogL: -237209.684 / Time: 1h:39m:52s (0h:21m:41s left)
Iteration 430 / LogL: -237197.951 / Time: 1h:42m:4s (0h:19m:16s left)
Iteration 440 / LogL: -237216.283 / Time: 1h:44m:15s (0h:16m:51s left)
Iteration 450 / LogL: -237226.595 / Time: 1h:46m:26s (0h:14m:27s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237187.266
Current log-likelihood at step 1: -237185.689
Current log-likelihood at step 2: -237185.405
Current log-likelihood at step 3: -237185.353
Parameters optimization took 2 rounds (9.990 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 459: -237185.353
Iteration 460 / LogL: -237198.396 / Time: 1h:48m:41s (0h:23m:26s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237180.728
Current log-likelihood at step 1: -237180.484
Current log-likelihood at step 2: -237180.453
Parameters optimization took 1 rounds (5.762 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 469: -237180.453
Iteration 470 / LogL: -237200.162 / Time: 1h:50m:55s (0h:23m:24s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237179.952
Current log-likelihood at step 1: -237179.686
Current log-likelihood at step 2: -237179.667
Parameters optimization took 1 rounds (4.768 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 474: -237179.667
Iteration 480 / LogL: -237186.816 / Time: 1h:53m:19s (0h:22m:14s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237169.303
Current log-likelihood at step 1: -237168.975
Current log-likelihood at step 2: -237168.935
Parameters optimization took 1 rounds (4.744 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 482: -237168.935
Iteration 490 / LogL: -237192.572 / Time: 1h:55m:38s (0h:21m:45s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237167.619
Current log-likelihood at step 1: -237167.121
Current log-likelihood at step 2: -237167.072
Parameters optimization took 1 rounds (6.590 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 492: -237167.072
Iteration 500 / LogL: -237177.512 / Time: 1h:57m:56s (0h:21m:44s left)
Iteration 510 / LogL: -237181.042 / Time: 2h:0m:11s (0h:19m:21s left)
Iteration 520 / LogL: -237181.583 / Time: 2h:2m:28s (0h:16m:59s left)
Iteration 530 / LogL: -237168.758 / Time: 2h:4m:41s (0h:14m:36s left)
Iteration 540 / LogL: -237179.541 / Time: 2h:6m:58s (0h:12m:15s left)
Estimate model parameters (epsilon = 0.100)
Initial log-likelihood: -237163.845
Current log-likelihood at step 1: -237163.442
Current log-likelihood at step 2: -237163.379
Parameters optimization took 1 rounds (5.085 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

BETTER TREE FOUND at iteration 549: -237163.379
Iteration 550 / LogL: -237187.873 / Time: 2h:9m:13s (0h:23m:18s left)
Iteration 560 / LogL: -237188.395 / Time: 2h:11m:24s (0h:20m:55s left)
Iteration 570 / LogL: -237181.050 / Time: 2h:13m:29s (0h:18m:32s left)
Iteration 580 / LogL: -237177.702 / Time: 2h:15m:36s (0h:16m:9s left)
Iteration 590 / LogL: -237179.657 / Time: 2h:17m:39s (0h:13m:47s left)
Iteration 600 / LogL: -237198.425 / Time: 2h:19m:51s (0h:11m:26s left)
Iteration 610 / LogL: -237190.022 / Time: 2h:21m:56s (0h:9m:5s left)
Iteration 620 / LogL: -237176.285 / Time: 2h:24m:4s (0h:6m:44s left)
Iteration 630 / LogL: -237174.026 / Time: 2h:26m:15s (0h:4m:25s left)
Iteration 640 / LogL: -237199.174 / Time: 2h:28m:23s (0h:2m:5s left)
Iteration 650 / LogL: -237175.462 / Time: 2h:30m:34s (0h:0m:-14s left)
Refining ufboot trees with NNI 5 branches...
100 samples done
200 samples done
300 samples done
400 samples done
500 samples done
600 samples done
700 samples done
800 samples done
900 samples done
1000 samples done
Total 1000 ufboot trees refined
TREE SEARCH COMPLETED AFTER 650 ITERATIONS / Time: 4h:49m:44s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
Initial log-likelihood: -237163.379
Current log-likelihood at step 1: -237163.372
Partition-specific rates:  0.168 0.064 1.797 0.284 0.026 7.704 0.045 0.018 1.014 1.269 0.089 1.450 0.133 1.485
Parameters optimization took 0 rounds (2.472 sec)


WARNING: Estimated model parameters are at boundary that can cause numerical instability!

Partition information was printed to output.best_model.nex
BEST SCORE FOUND : -237163.372

Testing tree branches by SH-like aLRT with 1000 replicates...
8.819 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file output.splits.nex
Total tree length: 41.020

Total number of iterations: 650
CPU time used for tree search: 100526.995 sec (27h:55m:26s)
Wall-clock time used for tree search: 17239.478 sec (4h:47m:19s)
Total CPU time used: 101370.885 sec (28h:9m:30s)
Total wall-clock time used: 17397.359 sec (4h:49m:57s)
UFBoot trees printed to output.ufboot

Computing bootstrap consensus tree...
Reading input file output.splits.nex...
463 taxa and 8257 splits.
Consensus tree written to output.contree
Reading input trees file output.contree
Log-likelihood of consensus tree: -237161.647

Analysis results written to: 
  IQ-TREE report:                output.iqtree
  Maximum-likelihood tree:       output.treefile
  Likelihood distances:          output.mldist
  Best partitioning scheme:      output.best_scheme.nex
           in RAxML format:      output.best_scheme

Ultrafast bootstrap approximation results written to:
  Split support values:          output.splits.nex
  Consensus tree:                output.contree
  UFBoot trees:                  output.ufboot
  Screen log file:               output.log

Date and Time: Tue Jun 23 15:04:34 2020
