Guide to files in DataDryad dataset for manuscript "Towards a Stable Global Noctuidae (Lepidoptera) Taxonomy":

1) all_taxa_alignment.txt - This is the FASTA alignment with all taxa included which was used in IQ-TREE_all_taxa and RAxML_all_taxa analyses.

2) parition.txt - This is the partition file used in all IQ-TREE and RAxML analyses.

3) IQ-TREE_all_taxa.zip - This file contains a folder of all input and output files from our IQ-TREE analysis of all taxa (our only IQ-TREE analysis). This folder also contains Noctuidae_26_voucher_table.csv which is used by the R script ggtree.R in producing the tree image tree_image.PDF, also provided.

4) RAxML_all_taxa.zip - This file contains a folder of all input and output files from our RAxML analysis of all taxa. This folder also contains Noctuidae_26_voucher_table.csv which is used by the R script ggtree.R in producing the tree image tree_image.PDF, also provided.

5) RAxML_Aedia_Copibryophila_removed.zip - This file contains a folder of all input and output files from our RAxML analysis of all taxa except Aedia and Copibryophila. This folder also contains Noctuidae_26_voucher_table.csv which is used by the R script ggtree.R in producing the tree image tree_image.PDF, also provided.

6) RAxML_Aedia_Tyta_removed.zip - This file contains a folder of all input and output files from our RAxML analysis of all taxa except Aedia and Tyta. This folder also contains Noctuidae_26_voucher_table.csv which is used by the R script ggtree.R in producing the tree image tree_image.PDF, also provided.

7) RAxML_Copibryohpila_Tyta_removed.zip - This file contains a folder of all input and output files from our RAxML analysis of all taxa except Copibryophila and Tyta. This folder also contains Noctuidae_26_voucher_table.csv which is used by the R script ggtree.R in producing the tree image tree_image.PDF, also provided.
