# Conda environment for tasks (spp, xcor) in atac/chip 

python >=3
bedtools ==2.29.0
bedops ==2.4.39
phantompeakqualtools ==1.2.2

r #==3.5.1  # 3.4.4 in docker/singularity image
r-snow
r-snowfall
r-bitops
r-catools
bioconductor-rsamtools
r-spp <1.16 #==1.15.5  # previously 1.15.5, and 1.14 in docker/singularity image, 1.16 has lwcc() error
tabix

matplotlib
pandas
numpy
ghostscript

openssl ==1.0.2u # to fix missing libssl.so.1.0.0 for UCSC tools (bedClip, ...)
