# Conda environment for tasks (macs2, macs2_signal_track) in atac/chip 

nomkl # using MKL can change MACS2 output randomly on different platforms
python >=3

macs2 ==2.2.4
bedtools ==2.29.0
bedops ==2.4.39
ucsc-fetchchromsizes # 377 in docker/singularity image
ucsc-wigtobigwig
ucsc-bedgraphtobigwig
ucsc-bigwiginfo
ucsc-bedclip
ucsc-bedtobigbed
ucsc-twobittofa
ucsc-bigWigAverageOverBed
pybedtools ==0.8.0
pybigwig ==0.3.13
tabix

matplotlib
ghostscript

openssl ==1.0.2u # to fix missing libssl.so.1.0.0 for UCSC tools (bedClip, ...)
