# Script for running Jasmine
if [ "$(uname -s)" = 'Linux' ]; then
    BINDIR=$(dirname "$(readlink -f "$0" || echo "$(echo "$0" | sed -e 's,\\,/,g')")")
else
    BINDIR=$(dirname "$(readlink "$0" || echo "$(echo "$0" | sed -e 's,\\,/,g')")")
fi

java -cp $BINDIR/jasmine_iris.jar:$BINDIR/jasmine.jar Main iris_args=samtools_path=samtools,racon_path=racon,minimap_path=minimap2 "${@:1}"

