set -euxo pipefail

dir=$(pwd)

for f in seq2science/workflows/*; do
    (
    if [ -d "$f" ]; then
        cd "$dir/$f"
        if [[ $f == *"scrna_seq"* ]]; then
            touch barcodes.txt
        fi
        $CONDA/bin/snakemake --configfile config.yaml --config rule_dir="${dir}/seq2science/rules" --quiet --rulegraph | $CONDA/bin/dot -Tpng -Gbgcolor=transparent -Gdpi=450 > "$dir/docs/resources/$(basename $f).png"
    fi
    )
done
