Find simulation tools

@BioSimulators

Find simulations

@BioSimulations

Run simulations

@runBioSimulations

Viz simulation results

@runBioSimulations

Combine simulations

@Vivarium

BioSimulations is a free platform for sharing and re-using biomodels, simulations, and visualizations. BioSimulations makes sharing and reuse easier by providing a simple web interface for a wide range of frameworks (e.g., logical, Flux-Balance Analysis (FBA), continuous kinetic, discrete kinetic), simulation algorithms (e.g., FBA, SSA), model formats (e.g., SBML), and tools (e.g., COBRApy, COPASI, tellurium).

Helping authors, reviewers, and investigators share and reuse biomodeling studies

BioSimulations provides investigators a central portal for finding models, simulations, and visualizations; modifying simulations and visualizations; executing simulations; and painting visualizations with simulation results.

BioSimulations makes it easier for authors to share models, simulations, and visualizations. Sharing modeling studies through BioSimulations makes it easier for other inevstigators to find and reuse them.

BioSimulations makes it easier for reviewers to evaluate models, simulations, and visualizations. Reviewers can interactively explore studies, verify the reproducibility of reported results, and test models under alternate conditions.

Central access to multiple modeling frameworks, algorithms, formats & tools

About BioSimulations

BioSimulations was developed by the Center for Reproducible Biomedical Modeling , the Karr Lab at the Icahn School of Medicine at Mount Sinai , and the Center for Cell Analysis & Modeling at the University of Connecticut Health Center at the University of Connecticut Health Center with support from the National Institutes of Health and the National Science Foundation.

BioSimulations is implemented using several open-source tools and cloud platforms. The models, simulations, and visualizations are available under the licenses specified for each resource. The code is openly available under the MIT license .

Please see the About page for more information.