Liftoff was run with the following command using the comprehensive GenCode Release 35 (GRCh38.p13) gff. liftoff -dir {output.temp} -sc 0.85 -copies -p {threads} -g {input.gff} -o {output.gff} -u {output.unmapped} {input.t} {input.r} Custom scripts were used to make a bed file from the resulting gff.
Contact Mitchell R. Vollger <mvollger@uw.edu>
Liftoff: an accurate gene annotation mapping tool, doi: https://doi.org/10.1101/2020.06.24.169680