Lls_ANM_ files are anonymous non-coding control loci.
Lls_CG_ files are candidate genes.

Each FASTA file contains known haplotypes extracted from 454 reads from individuals with high coverage. The sequence names contain the 454 barcode combinations for that individual (e.g. BAR01 - BAR 15). These combinations were left untranslated to anonymise the panel for the haplotype reconstruction process. Translation to individual identifier is possible using the barcodes.txt file, which provides sample ID for each barcode combination (e.g. 1.15 refers to the combination of barcodes 01 and 15).

Note that loci Lls_ANM_18_1 and Lls_CG06 had no 454 haplotypes available. In consequence, the files for these loci contain a small number of dummy individuals with homozygous Sanger sequence haplotypes. This was done to streamline batch processing with PHASE and is only given here for completeness.

