
seed used = 998177037

Before deleting alignment gaps
     22   1440

A_melanole                                 ATG GCT CGG ACA CTG GGA ACA CCC ATT GCA CTG GGG TTG TTG GGC CTG TGC TGG TCT CTG GCT ATT GCC CAC CCT CTT CCT CCG GAT GGT ACC CCT GGG AAA GAG ACT GAA GGT GGG AGT GGG ACC AGA GTG AAC CCA GAT GTG ACC --- GAA CTT TGC TTG GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAA CAT GGG GCC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AGA TGG GTC CAG GAG TTA ATT TCA GAG AGG TGG AAG AAT TTC ACC AGC TCC GTG GAT GCT GCA TTC CGC CGT GGT --- --- --- --- --- --- --- CAC AAC AGT GTC TTC CTG ATC AAG GGA GAC AAA GTC TGG GTG TAT CCT CCT GAG AAG AAG GAG AAA GGA TAT CCA AAG --- TTG CTC CAA GAA GAG TTT CCT GGA ATC CCA TCC CCA GTG GAT GCA GCT GTG GAA TGC CAC CGT GGA GAA TGC CAA GAT GAG GGC GTC CTC TTC TTC AAA --- GGT AAC CAA ACG TGG TTC TGG GAC TTG GCT ACG GGA ACC AAA AAG GAG CGT TCC TGG CCA GCT GTT GGG GAA TGC TCC TCT GCC ATG CGA TGG CTC AGC CGC TAC TAC TGT TTC CGG GGT AAC CAA TTC CTG CGC TTC CAC CCC GTC ACG GGA GAC GTG CTT CCA AAG TAC CCA CTG GAT GTT CGA GAC TAC TTC ATA CCC TGC CCT GGC AGA GGC CAC GGA --- CAC AGG AAT GGG ACG GGT CAT GGG AAT GGT ACC CAT CAT GGC CAT GGG GAT ATG CGC TGT AGC CCA TAT CTA GTC TTG TCT GCA CTG CTG ACT GAT AAC CAC GGT GCC ACA TAT GCC TTC AGT GGG TCC CAC TAC TGG CGT CTG GAC ACT AGC CGG GAT GGG TGG CAT AGC TGG CCC ATT GTC CAT CAG TGG CCC CAA GGT CCT TCA ACA GTA GAT GCT GCC TTT TCC TGG GAC AAT AAA GTC TAC CTA ATC CAG GGC ACT CAG GTA TAT ATC TTC CTG ACA AAG GGA GGC TAT ACT CTA GTA GAT GGT TAT CCA AAG AGG CTG GAG AAG GAA TTT GGG AGT CCT CAT GGG ATC AAC CTT GAT GCT GTG GAT GCA GCC TTT ACT TGT CCT GGG ACT TCT CGG CTC CAC ATT ATG GCA GGA CGG AAG CTG TGG TGG CTG GAC CTG AAG TTA GGA GCT CAA GCC ACG TGG ACG GAG CTT CCT TGG CCC CAT GAG AAG GTT GAC GGG GCC CTG TGT ATG GAA AAG TCC CTC GGC CCC ACC TCA TGT TCT GCC AAT GGT CCC GGC TTG TAC CTC ATC CAT GGC TCT GAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AGC ACA GCC AAG ACC CTT CCT CAG CCA CAG AGA GTG GAG --- AGC CTG CTG GGC TGC AAT CAT --- --- --- --- 
B_taurus                                   ATG GCT CGG GCA TTG AGA GTG CCA GTT GCA CTG TGG CTG TTG GGC TTG TGC TGG TCT TTG GCT AAA GCC CAC CCT CTG GCT AGA GCT CCT GAG CTT GGG CAC GGA GTT GAA GGT GGG AAT GTG GCC AAG CCG GAT CCA GAA GTG ACG --- GAA CGC TGC TCG GAT GGC TGG GGC TTT GAT GCT ACC ACC CTG GAT GAG CAT GGG AAC ATG CTG TTT TTA AAA GGG GAG TTT GTG TGG AAG GGT CAT GCC TGG GCC CGG CAG TTG ATC TCA GAG AGG TGG AAG GAT GCC CCC AGT CCC GTG GAT GCT GCA TTC CGC TAT GAT --- --- --- --- --- --- --- CGT AAC AGT GTC CTT CTG ATC AAG GGG GAC AAA TTC TGG GTA TAT CCT CCT GAG AAG GGG GAG GAA --- TAT CCA AAG --- TTG CTC CAA GAG AAG TTT CCT GGA ATC CCA TTC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGC GGA GAA TGC TCT CAT GAG GGT GTC TTC TTC TTC CAA GAA GGC AAC CAC ACG TGG TTC TGG GAC TTC TCT ACA AAA ACC ATA AAG AAA CGT TCC TGG CCA GCC GTT GGG AAC TGC TCC TCG GCC ATA CGA TGG CTC AAC CGC TAC TAC TGC TTC CGG GGT AAC AAA TTC CTG CGC TTC GAC CCC GTC ACG GGA GAA GTG AAT TCC ACT TAT CCT CGG GAT GTC CGA GAT TAC TTT ATG TCC TGC CCT AAC AGA GGC CAT GCA --- CAT AGG AAT GCA ACC CAG CAT ATG GAT AAG --- --- --- --- --- --- --- --- CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA TTG CTT TCT GAC AAC CAT AGT GCC ACC TAC GCT TTC AGT GAG AAC CAC TAC TGG CGT CTG GAC AGC AGC CGG GAC GGG TGG CAC AGC TGG CGC ATT GAG CAT CTG TGG CCC CAA GGT CCC TCA ACA GTG GAT GCT GCC TTT CTC TGG GAT AAA AAG CTC TAC CTC ATC CAG GGT ACC CAG GTA TAT ATC TTC CTG ACA AGG GCA GGC TAC ACT CTC GTA AAA GAT TAT CCA AAG CAG CTG GAG AAG GAA TTT GGG AGC CCT GAT GGG GTC TGC CTT CAT TCT GTG GAT GCA GCC TTT ACC TGT CCT GGA TCT TCT CAG CTC TAC ATC ATG GCA GGC CAG AAG CTG TGG AGG CTG GAC CTG AAC TTA GGA GCT CAA GCC ACG TGG ACA GAG CTT CCT TGG CTC CAT ACG AAA GTC GAT GGG GCC CTG TGT ACA GAG AAG TCT CTG GGC CCC CAC TCG TGT TCT GCC AAT GGT CTG GGC TTG TAC CTC GTC CAA GGC CCC AAT CTG TAC TGC TAC AAA GAT GTG GAG GAA TTG AGC AAG ACC AAG GAC CTT CCC CAG GCC CAG AGG ATG AAC --- AGC CTC CTG GGC TGC GCT CCC CAC CAG CAC TCC 
C_familiar                                 --- --- --- --- --- --- ATG GCT TGG GCA CTG GGG TTG TTG GGC CTG TGC TGG TCT CTG GCT GTT GCC CAC CCT CTT TCT CCG GAC GGT ACC CAT GGG AAT GGA ACT GAA GGT GGG AGT GGG GCC AGA GTG AAG CCA GAT GTG ACC --- GAA CTC TGC TTG GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAA CAT GGG GCC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AGA TGG GTC CGG GAG CTA ATC TCA GAG AGG TGG AGG AAT TTA ACC AGC CCC GTG GAT GCG GCC TTC CGC CGT GGT --- --- --- --- --- --- --- CAC AAC AGT GTC TTC CTG CTC AAG GGA GAC AAA GTC TGG GTG TAT CCT CCT GAG AAG AAA GAA CAA GGA TAT CCA AAG --- TTG CTC CAA GAA GAG TTT CCT GGG ATC CCA TCC CCT GTG GAT GCA GCT GTA GAA TGT CAC CGT GGG GAA TGC CAA GAT GAA GGT GTC CTC TTC TTC AAA --- GGT AAC CAA ACA TGG TTC TGG GAC TTG ACA ACG GGA ACC AAA AAG GAA CGT TCC TGG CCA GCT GTT GGG CAC TGC TCC TCT GCC TTA CGA TGG CTC AGC CGT TAC TAC TGC TTC CGG GGT AAC CAA TTC CTG CGG TTC AAC CCT GTC ACG GGA GAG GTG CTT CCA AAG TAC CCT CTG GAT GTT CGA GAC TAC TTC ATA CCT TGC CCT GGC AGA GGT CAT GGA --- CAC AGG AAT GGG ACA GGC CAT GGG AAT GAT ACC CAT CAT GGC CGT GAG GAT ATG CGC TGT AGT GCA TTT CTA GTC TTG TCT GCA CTG CTG ACT GAC AAC CAT GGT GCC ACA TAT GCC TTC AGT GGG TCC CAC TAC TGG CGT CTG GAC ACC AGT CGG GAT GGG TGG CAC AGC TGG CCC ATT GTC CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAC AAT AAA GTC TAC CTA ATC CAA GGC ACT CAG GTA TAT ATC TTC CTG ACA AAG GGA GGC TAT ACT CTA GTA GAT GGT TAT CCG AAG AGG CTG GAG AAG GAA TTT GGG AGC CCT CAT GGG ATC AAC CTT GAG ACT GTG GAT GCA GCC TTT ACT TGT CCT GGG ACT TCT CGT CTC CAC ATT GCA GCA GGA CGA CAT CTG TGG TGG CTG GAC CTG AAG TTA GGA GCT CAA GCC ACA TGG ACG GAG GTT CCT TGG CCA CAT GAG AAG GTT GAC GGG GCC CTG TGT ATA GAA AAG TCC CTC GGC CCC AAC TCA TGT TCT GCC AAT GGT CCC GGC TTA TAT CTC ATC CAT GGC TCC GAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AGC ACA GCC AAG TCC CTT CCA CAG CCC CAG AGA GTG AAG --- AGC CTC CTG GGC TGC AAT CAT --- --- --- --- 
C_jacchus                                  ATG GCT AGG GCA CTG GGA GCA CCC ATT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCG AAC CCT CTT CCT AGG ATG AGT GCC CAC GGG AAT GTT GCT GAA GGC GAG --- --- ACC AAG --- --- CCA GAT GTG ACT --- GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTC GTG TGG AAG AGT CAC AAA TGG GAA CGG GAG TTA ATC TCA GAG AGA TGG AAG AAT TTC ACC AGC CCT GTG GAT GCT GCA TTC CGT CGT GGT --- --- --- --- --- --- --- CAC AGC AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAA AAG GAG AAA GGA TAC CCA AAG --- TTA CTC CAA GAG GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GAT GAA GGC GTC CTC TTC TTC CAA --- GGT GAC AGC GAA TGG TTC TGG GAC TTG ACT ACG GGA AAC ATA AAG AAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCC GCC CTG AGA TGG CTG GGT CGC TAC TAC TGC TTC CAG GGT AAC AAA TTC CTG CGC TTC AAT CCT GCT ACG GGA GAG GTG CCC CCT AGG TAC CCT CTG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA --- CAC AGG AAT GGG ACT GGC CAT GGG AAC AGG ACC CAC CAT GGC CCT GGG TAT ATG CGC TGT AGC CCA GAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT GCC ACC TAT GCC TTC AGT GGA GCC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG ATA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGT GGT TAT CCA AAG CGG CTG GAG AAG GAA GTC GGG AGC CCT CCT GGG ATC AGC CTG GAG TCT GTG GAT GCG GCC TTT GTC TGC CCT GGG TCT TCT CAG CTC CAC ATC ATG GCA GGA CGG CGG CTG TGG AGG CTG GAC CTA AAG TCA GGA GCT CAA GCC ATG TGG ACG GAG CTT CCT TGG CCC CAT GAT AAG GTG GAT GGG GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAT TCA TGT TCT GCC AAT GGT CCC AGC TTG TAC CTC ATC CAT GGC CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG ACC CTT CCA CAG CCC CAG AAA GTG GCC --- AGT CTC TTG GGC TGC ACT CAC --- --- --- --- 
C_porcellu                                 ATG GCT AGG GCA CTG GGA GCA CCA ATT GTA CTT GCA TTG TTG AGC CTG TGC TGG TCT CTG GCC ACT GCC ACC CCT CTT CCT CGT ACT AGT ACG CAT GGG AAT GTC ACT GAA CAT GAG AGT GAG ACC AAG ACA GAC CAA CAT GTG ATC --- GAA TAC TGC TCA GAT AGC TGG AGC TTC GAT GCC ACC ACC ATA GAT GAC AGT GGA GCC ATG CTA TTT TTT AAA GGG GAA TAC GTA TGG AAG AGT CAC AAA TGG ACC AAG GAG TTA ATA TCA GAG AGG TGG AAG AAT TTC ACC AGC TCT GTG GAT GCA GCA TTC CGC CGT GGC --- --- --- --- --- --- --- CAT GAC AGT GTC TTC CTG ATT AAG GGG GAC AAA GTC TGG GTG TAC CCT CCT GAA AAG AAG GAG AAA GGA TAT CCA ACA --- CTG CTC CAA GAT GAA TTT CCT GGA ATT CCA TCC CCT CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGC CAG GAG GAA GGC ATT CTC TTC TTC CAA --- GGT AGC CGC ACG TGG TTC TGG GAC CCT ACT ACA AGA ACC AAA AAA GAG CGT TTC TGG CCG GCT GTT GGA AAC TGC ACC TCT GCT CTG CGG TGG CTT GGC CGC TAC TAC TGC TTC CAG GGT AAC CAG TTC CTG CGC TTC AAC CCC ATC ACG GGA GAG GTG CCT GCC CGT TAC CCT CTG GAT GCT CGT GAC TAC TTC ATA CCC TGT CCT GGC AGA GGC CAC AAG --- AAC AGA --- --- ACT GGC CAT GGA AAC AGC ACC CAC CAT CAA CTT GAG GGA TCA CGC TGC AGC CCG CAT CTA GTC TTA TCT GCA TTG GTA TCA GAC ACC CAT GGT GCC ACC TAT GCC TTC AGT GGG CCC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAC GGG TGG CAT AGC TGG CCC ATC GCT CAT CAG TGG CCC CAG GGC CCT TCC ACG GTG GAC GCT GCC TTT TCC TGG GAG GAT AAA CTC TAC CTG CTA CAG GGC ACC CAG GTG TAT GTC TTC CTG ACC AAG GCA GCC CAC ACC CTC GTG AGT GGT TAC CCG AAG CGG CTG GAG AAG GAG CTC GGG GGC CCT CAT GGG ATC AGC CTT AAG GCC GTG GAC GCA GCC TTC ACT TGT CCT GGG TCT TCT CAG CTC TAT GTC ACA GCC GGT CGG CGG CTG TGG TGG TTG GAC CTG AAG CTG GGG CCT CAG GCC ACA TGG ACA GAG CTC CCA TGG GCC CAT GAG GAC ATC GAC GCG GCC CTG TGT GTG GAA AAG TCC TTT GGC CTC AGC TCG TGT TCT GCT GCT GGC CCC --- CTA TAC CTT GTC CGG GGC CCC AAT GTG TAC TGT TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG ACC CTC CCG CAG CCG CAG AAG GTG GCC --- AGC CTC CTG GGC TGC GGC CAC --- --- --- --- 
E_caballus                                 ATG GCT CCA GTG CTG GGA GGA CCA GTT GCG CTG GGG TTG TTG GGC CTG TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT CCG GAT AGT GCA CCT GGG ACC GGA GCT GAA GGT GGG AAT GGG GTC AAG CAG GAC CCA GAC GTG ATC --- GAA CGC TGC TCA GAT GGC TGG AGC TCT GAT GCT ACC ACC CTG GAT GAA CAT GGG GCC ATG GTG TTT TTC AAA GGG GAG TTC ATG TGG AAG AGT CCC AAC TGG ACC CGC GAA TTA ATC TCA GAG AGG TGG AAG AAT TTC ATT GGC CCT GCG GAT GCT GCA TTC CGC CGT AGT --- --- --- --- --- --- --- AAT GAC AGC GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTG TAC CCT CCT GGG AAG AAG GAG AAA GGA TAT CCA AAG --- TTG CTC CAA GAG GAG TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGC CAA GAT GAG GGC ATC CTC TTC TTC AAA --- GGT AAC CGC ACC TGG TTC TGG GAC TTG GCT ACG AGA ACC ACA AAG GAG CGT TTC TGG CTT GCT GTT CAG AAT TGC TCC TCT GCC ATG CGA TGG CTC AAC CGC TAC TAC TGC TTC TCG GGT AAC AAG TTC CTG CGT TTC AAC CCC GTC TCA GGA GAG GTA CCT CCC AAG TAC CCT CTG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAC AGA --- AAC AGG --- --- ACT GGC CAC GGG ACT GGT ACC CAC CGT GGC TAT GGG GCT TCG CGA TGT AGC CCA GAT CTA GCC TTG TCT GCA TTG GTG TCT GAC AAC CAT GGT GCC ACC TAC GCC TTC AGT GAG TCT CAC CAC TGG CGC CTG GAC ACC AGC AAG GAT GGG TGG CAT AGC TGG CCC ATT GAC CAT CAG TGG CCC AAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAT GAT AAA CTC TAT CTG ATC CAG GGC ACT CAG GTA TAT ATC TTC CTG ACG AAG GGA GGC CAT ACC CTA GTA GAT GGT TAT CCA AAG CGG CTG GAG AAG GAA CTC GGG AGC CCT CAT GGG ATC AGC CTT GAG ACT GTG GAC GCA GCC TTT ATG TGT CCT GGG TCT TCT CGG CTC CAC GTT ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCT GCA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAC GAG AAG GTT GAC GGG GCC CTG TGT GTG GAA AAG TCC CTC GGC CCT CAC TCA TGT TCT GCC AAC GGT CTC GGC TTG TAC CTC ATC CAA GGC CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAA GCC CTT CCC AAG CCC CAG AGA ATG AAC --- AGC CTC CTG GGC TGC CAT AAT --- --- --- --- 
G_gorilla                                  ATG GCT AGG GTT CTG GGA GCA CCC GTT GCA CTG GGG TTG TGG AGC CTA TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT CCG ACT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG --- --- ACC AAG CCA GAC CCA GAC GTG ACT --- GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGG GAG TTA ATC TCA GAG AGA TGG AAG AAT TTC CCC AGC CCT GTG GAT GCT GCA TTC CGT CAA GGT --- --- --- --- --- --- --- CAC AAC AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAG AAA GGA TAC CCA AAG --- TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA GAA GGT GAC CGC GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC GAC CCT GTC AGG GGA GAG GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA --- CAC AAG AAT GGG ACT GGC CAT GGG AAC AGT ACC CAC CAT GGC CCG GAG TAT ATG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT GCC ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCG AAG CGG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT ATC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCC CAA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT ATG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC GGC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG ACC CTT CCG CAA CCC CAG AAT GTG ACC --- AGT CTC CTG GGC TGC ACT CAC --- --- --- --- 
H_sapiens                                  ATG GCT AGG GTA CTG GGA GCA CCC GTT GCA CTG GGG TTG TGG AGC CTA TGC TGG TCT CTG GCC ATT GCC ACC CCT CTT CCT CCG ACT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG --- --- ACC AAG CCA GAC CCA GAC GTG ACT --- GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGG GAG TTA ATC TCA GAG AGA TGG AAG AAT TTC CCC AGC CCT GTG GAT GCT GCA TTC CGT CAA GGT --- --- --- --- --- --- --- CAC AAC AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAG AAA GGA TAC CCA AAG --- TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA --- GGT GAC CGC GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC GAC CCT GTC AGG GGA GAG GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA --- CAC AGG AAT GGG ACT GGC CAT GGG AAC AGT ACC CAC CAT GGC CCT GAG TAT ATG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT GCC ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA GCA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCG AAG CGG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT ATC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCC CAA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTA GAC GGA GCC TTG TGT ATG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC GGC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG GCC CTT CCG CAA CCC CAG AAT GTG ACC --- AGT CTC CTG GGC TGC ACT CAC --- --- --- --- 
M_lucifugu                                 ATG GCT CGT GCA CTG GGA ACA CTA GTT GCC CTG GGG CTG TTG AGC CTG TGC TGG TCT CTG GCC ATT GCC CAC CCT GTC ACT TCG ACT GGT TCC TCT GGG AGT GGA GCT GAA GGT GGG AAT AGG AAC CAG CTG GCC ACA GAC ATG CGG --- GAA CTC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACT ACT CTG AGT GAA AAT GGG ACC ATG TTA TTT TTT AAA GGG GAG TAC ATG TGG ACA GCT CAC CAC TGG GGC CGG GAG TTG ATT TCA GAG AAG TGG AAG --- --- ACC AGC TCC GTG GAT GCC GCC TTT CGC CTT AAT --- --- --- --- --- --- --- CAA GAC AGT GTC TTC GTG ATC AAG GGG GAC AAA GTC TGG GTG TAC CCT CCT AAG GAG AAA GAG GAG GAA TAC CCA AAG --- TTG CTC CAA GAT GAG TTT CCT GGA ATC CCA TCC CCA GTG GAC GCA GCT GTG GAA TGT CAC CGT GGA GAA TGC AAG AGT GAG GGC ATC CTC TTC TTC CAA GAA GGT AAC CAC ACG TGG TTC TGG GAC TTG GCT ACA AAA ACC GTA AAG GAA CGT GAC TGG CCA GCT GTT TGG AAT TGC TCC TCT GCC ATT CGA TGG ATT GAC CGC TAC TTC TGC TTC CGG GGT AAC CAA TTC CTA CGC TTC GAC CCT GTC ACG GGA GAG GTG CTT CCT AGG TAC CCT CTG GAT ATC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA --- CAC AGA AAC AGG ACC AGC CCT GGA AAT GGT ACC CAC CAT GGC TAT AAG GAG GTA CGC TGT AAC CCA GAT GTA GTC TTG TCT GCA CTG GTG TCT AAC AAC TAT GGT GCC ATC TAT GCC TTC AGT GGG TCC AAC TAC TGG CGT TTG GAC AGC AGC AAG GAT GGG TGG CAT AGC TGG CCC ATT GTC CAT CAG TGG CCC AAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAT GAT AAA CTC TAT CTG ATC CAG GGC ACT CAG ATA TAT ATC TTC CTG ACA AAG GGA GGC CAT ACC CTA GTA GAT GGA TAT CCA AAA CGA CTG GAG AAG GAG TTA GGG AGC CCT CCT GGG ACC AGC CTT TTG GCT GTG GAT GCA GCC TTT ATC TGT CCT GGG TCT TCT CGA CTT CAC ATC ATG GCA GGA CGA CAG CTG TGG TGG CTG GAC ATG AAG TTA GGA GCT CAA GCG ACA TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTT GAT GGG GCC CTG TGC ATG GAA AAG TCC CTT GGC CCC AAC TCA TGT TCT GCC AAT GGC TCC GGC TTA TAC CTC ATC GAT GGC CAA AAT TTG TAC TGC TAC AGC AAT GTG GAG GAA CTG AGT GCA GCC AAA GCC CTT CCC CAG CCC CTG AGA ATG AAC --- AGC CTC CTG GGC TGC AGT CAC --- --- --- --- 
M_mulatta                                  ATG GCT AGG GCA CTG GGA GCA CCC GTT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT CCG ACT AGT GCC CAT GGG AAT GTT GCT GAA GGT GAG --- --- ACC AAG CCA GAC CCA GAC GTG ACT --- GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GCC CGC GAG TTA ATC TCA GAG ACA TGG AAG AAT TTC ACC AGT CCT GTG GAT GCT GCA TTC CGT CAT GGT --- --- --- --- --- --- --- CAC CAG AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAG AAA GGA TAC CCA AAG --- TTA CTC CAA GAT AAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC ATC CTC TTC TTC CAA --- GGT GAC CAC AAG TGG TTC TGG GAC TTG GCT ACG GGA ACT ATG AAG AAG CGT TAC TGG TCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC AAC CCT GTC ACG GGA GAG GTG CCT CCC AGG TAC CCG CTG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA --- CAC AGG AAT GGG ACT GGC CAT GGG AAT GGT ACC CAC CAT GGC CCT GAA TAT ATG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ATG TCT GAC AAC CAT GGT GCC ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACT CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCA AAG CGG CTG GAG AAG GAA GTC GGG AGT CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT GTC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCT CAA GCC ACA TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCT GCC AAT GGT CCC GGC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAA TCC CCT CCG CAG CCC CAG AAA GTG ACC --- AGT CTC CTG GGC TGC ACT TAC --- --- --- --- 
M_musculus                                 ATG GCT AGG ACA GCA GTG GCG CTA AAT ATC CTG GTG TTG CTG GGC CTG TGC TGG TCC CTG GCT GTT GCC AGC CCT CTT CCT --- --- ACT GCC AAC GGG AGA GTT GCC GAA GTT GAA AAT GGG ACC AAG CCA GAT TCA GAT GTA CCC --- GAA CAC TGC TTG GAT ACC TGG AGC TTT GAT GCT GCG ACC ATG GAT CAC AAT GGG ACC ATG CTG TTC TTT AAA GGG GAG TTT GTG TGG AGG GGT CAC TCA GGG ACC CGG GAG TTG ATC TCA GCG AGG TGG AAG AAT CCC ATC ACC TCA GTG GAT GCT GCA TTC CGT --- GGT --- --- --- --- --- --- --- CCT GAC AGT GTC TTC CTG ATC AAG GAA GAC AAA GTC TGG GTG TAC CCT CCT GAA AAG AAG GAA AAC GGG TAT CCA AAG --- TTG TTC CAA GAA GAG TTT CCT GGA ATC CCA TAC CCA CCA GAC GCA GCT GTG GAA TGC CAC CGT GGA GAG TGC CAG AGT GAA GGC GTC CTT TTC TTC CAA --- GGT AAC CGC AAG TGG TTC TGG GAC TTT GCC ACA AGA ACC CAA AAG GAA CGT TCC TGG TCA ACT GTT GGG AAT TGC ACT GCG GCC TTG AGG TGG CTT GAA CGC TAC TAC TGC TTC CAG GGT AAC AAG TTC CTG CGA TTC AAC CCT GTC ACA GGA GAG GTG CCT CCC AGA TAC CCT CTG GAT GCC CGT GAC TAC TTC GTA TCC TGC CCT GGC AGA GGC CAT GGT AGA CCC AGA AAT GGA ACT GCT CAT GGA AAT AGC ACC CAT --- --- CCT ATG CAT TCA CGT TGT AGC CCA GAT CCT GGC CTG ACT GCA CTG CTG TCT GAC CAT CGC GGT GCC ACC TAT GCC TTC ACT GGC TCC CAC TAC TGG CGT CTG GAC TCC AGC CGT GAT GGA TGG CAT AGC TGG CCC ATT GCT CAT CAC TGG CCT CAG GGT CCT TCA ACA GTA GAT GCT GCC TTT TCC TGG GAT GAT AAA GTC TAT CTG ATC CAG GGC ACT CAA GTG TAT GTC TTC CTG ACA AAG GGA GGC AAT AAC CTA GTA AGT GGT TAT CCA AAG CGG CTG GAG AAG GAA CTT GGG AGC CCT CCT GGG ATC AGC CTT GAG ACC ATA GAT GCA GCC TTT TCC TGC CCT GGT TCT TCC AGG CTC TAT GTC TCA TCA GGA CGG CGG CTT TGG TGG CTG GAC CTG AAG TCA GGA GCC CAG GCA ACA TGG ACA GAG GTT TCC TGG CCC CAT GAG AAA GTT GAT GGG GCC CTG TGT TTG GAC AAG TCT CTT GGC CCC AAC ACA TGT TCT TCC AAT GGT TCC AGC TTG TAC TTT ATC CAT GGG CCC AAT TTG TAC TGC TAT AGC AGT ATA GAC AAA CTG AAT GCA GCC AAG AGT CTG CCT CAG CCT CAG AAG GTG AAC --- AGC ATC CTT GGC TGC AGT CAG --- --- --- --- 
N_leucogen                                 ATG GCT AGG GCA CTG GGA GCA CCC GTT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT CCG ACT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG ACG --- ACC AAG CCA GAC CCA GAC GTG ACT --- GAA CGC TGC TCA GAT GGC TGG AGC CTT GAT GCC ACC ACC CTG GAT GAC AGT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGC GAG TTA ATC TCA GAG AGA TGG AAG AAT TTC CCC AGC CCT GTG GAT GCT GCA TTC CGT CAT GGT --- --- --- --- --- --- --- CAC AAC ACT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAG AAA GGA TAC CCA AAG --- TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAG TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA --- GGT GAC CGT GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGC AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTT GAC CCT GTC AGG GGA GAA GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA --- CAC AGG AAT GGG ACT GGC CAT GGG AAT GGT ACC CAC CAT GGC CTT GAG TAT ATG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT GCC ACC TAT GCC TTC AGT GGG TCC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTA CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GCA AGC GGT TAT CCG AAG CGG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT GTC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTA TGG TGG CTG GAC CTG AAG TCA GGA GCT CAA GCC ATG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC GGC TTG TAC CTC ATC CAT GGT CCC AAC TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAC GCA GCC AAG GCC CTT CCG CAG CCC CAG AAC ATG ACC --- AGT CTC CTG GGC TGC ACT CAC --- --- --- --- 
O_cuniculu                                 ATG GTT AAG GCA TCA GGA ATA CCC ATT GCA TTG GGG GTT TGG GGC CTG TGC TGG TCT CTG GCC ACT GTC AAC TCT GTT CCT CTG ACC AGT GCC CAT GGG AAT GTT ACT GAA GGT GAG AGT GGG ACC AAG CCA GAA GCA GAT GTG ATC --- GAA CAG TGC TCA GAT GGT TGG AGC TTT GAT GCC ACC ACC CTG GAT GAC AAT GGG ACC ATG CTG TTT TTT AAA GAT GAG TTC GTG TGG AAG AGT CAC AGA GGG ATT CGG GAG TTG ATC TCA GAG AGG TGG AAG AAT TTC ATC GGT CCT GTG GAT GCT GCT TTC CGC CAT GGT --- --- --- --- --- --- --- CAT ACC AGT GTT TAC CTG ATT AAG GGG GAC AAA GTC TGG GTA TAC ACT TCT GAA AAG AAT GAG AAA GTC TAT CCA AAG --- TCC CTC CAA GAT GAG TTT CCT GGA ATC CCA TTC CCA TTG GAT GCA GCT GTG GAG TGT CAC CGT GGA GAA TGC CAA GAT GAA GGC ATC CTC TTC TTC CAA --- GGT AAC CGC AAG TGG TTC TGG GAC TTG ACT ACT GGA ACA AAG AAG GAG CGT TCT TGG CCG GCA GTT GGG AAC TGC ACC TCT GCC CTG CGA TGG CTC GGC CGC TAC TAT TGC TTC CAG GGT AAC CAG TTC CTC CGC TTC AAT CCG GTC TCG GGA GAG GTG CCT CCT GGG TAC CCT CTG GAT GTC CGA GAC TAC TTC CTA TCC TGC CCT GGC AGA GGT GAA GGA --- CAC AGA --- --- TCA AGC CAT AGG AAC AGT ACC CAA CAT GGG CAT GAG AGC ACA CGC TGC GAC CCA GAT CTA GTC TTG TCT GCA ATG GTG TCT GAC AAC CAT GGT GCC ACT TAT GTC TTC AGT GGG TCC CAC TAC TGG CGC CTG GAC ACC AAC CGG GAT GGG TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCA CAA GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAG GAT AAA CTC TAT CTG ATC CAG GAC ACC AAG GTA TAT GTC TTT CTG ACA AAA GGA GGC TAT ACC CTG GTA AAT GGT TAC CCA AAG CGG CTG GAG AAG GAA CTT GGA AGC CCT CCT GGG ATA AGC CTT GAG GCT GTG GAT GCG GCC TTT GTC TGT CCT GGG TCT TCT CGG CTC CAC ATC ATG GCA GGA CGG CGT CTG TGG TGG CTG GAC CTG AAG TCT GGA GCT CAA GCC ACG TGG ACA GAA CTT CCT TGG GCT CAT GAG AAG GTT GAC GGG GCC CTG TGT ATG GAA AAG CCC CTT GGC CCC AAC TCA TGT TCT ACC AGT GGT CCC AAC TTG TAC CTC ATC CAT GGC CCC AAT TTG TAT TGC TAC AGC GAT GTG GAC AAA CTC AAT GCA GCC AAG AAC CTC CCC CAG CCC CAG AGA GTG TCC --- AGA CTC CTG GGC TGT ACT CAC --- --- --- --- 
P_abelii                                   ATG GCT AGG GCA CTG GGA GCA CCC ATT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCC ACC CCT CTT CCT CCG ACT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG --- --- ACC AAG CCA GAC CCA GAT GTG ACT --- GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGG GAG TTA ATC TCA GAG AGA TGG AAG AAT TTC CCC AGC CCT GTG GAT GCT GCA TTC CGT CAA GGT --- --- --- --- --- --- --- CAC AAC AGC GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAG AAA GGA TAC CCA AAG --- TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA --- GGT GAC CGC GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC GAC CCT GTC AGG GGA GAG GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA --- CAC AGG AAT GGG ACT GGC CAT GGG AAC GGT ACC CAC CAT GGC CCT GAG TAC ATG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT GCC ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCG AAG CAG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT ATC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCT CAA GCC TTG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC GGC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG GCC CTT CCG CAG CCC CAG AAC GTG ACC --- AGT CTC CTG GGC TGC ACT CAC --- --- --- --- 
P_troglody                                 ATG GCT AGG GTA CTG GGA GCA CCC GTT GCA CTG GGG TTG TGG AGC CTA TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT CCG ACT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG --- --- ACC AAG CCA GAC CCA GAC GTG ACT --- GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGG GAG TTA ATC TCG GAG AGA TGG AAG AAT TTC CCC AGC CCT GTG GAT GCT GCA TTC CGT CAA GGT --- --- --- --- --- --- --- CAC AAC AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAG AAA GGA TAC CCA AAG --- TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAT CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA --- GGT GAC CGC GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC GAC CCT GTC AGG GGA GAG GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA --- CAC AGG AAT GGG ACT GGC CAT GGG AAC AGT ACC CAC CAT GGC CCT GAG TAT ATG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT GCC ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA GCA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCG AAG CGG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT ATC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCC CAA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT ATG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC GGC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG GCC CTT CCG CAA CCC CAG AAT GTG ACC --- AGT CTC CTG GGC TGC ACT CAC --- --- --- --- 
R_norvegic                                 ATG GCT AGG ACA GTA GTA GCA CTA AAT ATC CTG GTA TTG CTG GGC CTG TGC TGG TCC CTG GCT GTT GCC AAC CCT CTT CCT --- --- GCT GCC CAT GAG ACT GTT GCT AAA GGT GAA AAT GGG ACC AAG CCA GAC TCA GAT GTA ATC --- GAA CAC TGC TCA GAT GCC TGG AGC TTT GAC GCT ACC ACC ATG GAT CAC AAT GGG ACC ATG CTG TTC TTT AAA GGG GAG TTT GTG TGG AGG GGT CAC TCA GGG ATC CGG GAG TTA ATC TCA GAG AGG TGG AAG AAT CCC GTC ACC TCA GTG GAT GCT GCA TTC CGT --- GGT --- --- --- --- --- --- --- CCT GAC AGT GTC TTC CTG ATC AAG GAA GAC AAA GTC TGG GTG TAT CCT CCT GAA AAG AAA GAG AAC GGG TAT CCA AAG --- TTG TTC CAA GAA GAG TTT CCT GGA ATC CCA TAC CCA CCA GAC GCA GCT GTG GAA TGC CAC CGT GGA GAA TGC CAG AGT GAA GGT GTC CTC TTC TTC CAA --- GGT AAC CGC AAG TGG TTC TGG GAC TTT GCC ACA AGA ACC CAA AAG GAA CGT TCC TGG CCT GCT GTT GGG AAT TGC ACT GCG GCC TTG AGG TGG CTT GAA CGC TAC TAC TGC TTC CAG GGT AAC AAG TTC CTG AGA TTT AAC CCC GTC ACA GGA GAG GTG CCT CCC AGA TAC CCT CTG GAT GCC CGT GAC TAC TTC ATA TCC TGC CCT GGC AGA GGC CAT GGT AAA CTA AGA AAT GGA ACT GCT CAT GGG AAT AGC ACC CAT --- --- CCT ATG CAT TCG CGT TGT AAC GCA GAT CCT GGC CTG TCT GCA CTG CTG TCT GAC CAT CGA GGT GCC ACC TAT GCC TTC AGT GGC TCC CAC TAC TGG CGT CTG GAC TCC AGC CGT GAT GGG TGG CAT AGC TGG CCC ATT GCT CAT CAC TGG CCC CAG GGT CCT TCA GCA GTA GAT GCT GCC TTT TCC TGG GAT GAG AAA GTC TAT CTG ATC CAG GGC ACT CAA GTA TAT GTC TTC CTG ACG AAG GGG GGC AAT AAC CTA GTA AGT GGT TAT CCA AAG CGG CTG GAG AAG GAA CTT GGG AGC CCT CCC GGG ATC AGC CTT GAT ACC ATA GAT GCA GCC TTT TCC TGC CCT GGT TCT TCC AAG CTC TAC GTC ACA TCA GGA CGG CGG CTT TGG TGG CTG GAC CTG AAG TCA GGA GCC CAG GCG ACA TGG GCA GAG CTT TCC TGG CCC CAT GAG AAA GTT GAT GGT GCC CTG TGT TTG GAA AAG TCC CTT GGT CCC TAC TCA TGC TCT TCC AAT GGT CCC AAC TTG TTC TTT ATC CAT GGG CCC AAT TTA TAC TGC TAT AGC AGT ATA GAC AAA CTG AAT GCA GCC AAG AGT CTG CCT CAG CCC CAG AAA GTG AAC --- AGC ATC CTT GGC TGC AGT CAA --- --- --- --- 
S_araneus                                  ATG GCT AAA GCA CTG --- --- --- CTT GCA CTC GGG TTA TTG GGC CTA TGC TGG CCA CTG GCC CTC GCC CAC CCT CTT TCT CCG ACT GGT GGC CCC AGA AAC ACA GAC GAA GGG AGA AAT GAG ACC CAG CCC AAA CCA GAC ATG ACG --- GAA CTC TGC TCG GAT GAC TGG AGC TTC GAC ACT ATG ACC CTG GAT GAC AAC GGG GCC ATG CTG TTT TTC AAA GGG GAG TTC GTG TGG AGG AGT CAT AGC TGG ACC CGG GAG CTG ATC TCG GAC AGG TGG AAG AAT TTC AAC AGC TCA GTG GAT GCC GCC TTC CGC CAC GGG --- --- --- --- --- --- --- CAC GAC AGC GTC TTC CTG ATC AAG GGG GAC AAA GTC TGG CTG TAT TCT CCT GAG ATG AAG AAA GAA --- TAT CCA CAG --- CTG CTC CAA GAT GAG TTT CCC GGA ATC GCA TCA CCA CTG GAT GCA GCG GTG GAA TGT CAC CGT GGT GAA TGC CAA GAT GAA GGT GTC CTC TTC TTC CAA --- GGT AAC CGC ACA TGG TTC TGG GAC ATG ACC ACC AAA ACC AAA AAG GAA CGT TTC TGG CCG GCT GTT GGG AGC TGC TCC TCC GCC CTG CGA TGG CTC GGC CGC TAC TAC TGC TTC CGG GGT AAT CAG TTC CTG CGC TTC GAC CCC GTC ACG GGA GAG GTG CTT CCC AGG TAC CCT CTG GAT ATG CGA GAC TAC TTC ATG CCC TGT CCT GGC AGA GGC CAC GGA --- CAA AGG --- --- ACT AGG CCC AAG AAC AGT ACC CAC --- --- CCT ATG CAC ACA CGC TGT AGC CCG GAT CTA GTC TTG TCT GCA CTG CTG TTT GAC AAC CAT GGT GCC ATT TAT GCC TTC ACT GGG AGC CAC TAC TGG CGT CTG GAC TCC AGA AAG GAT GGG TGG CAC AGC TGG CCC ATT TCT CAC GTG TGG TCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAG GAC AGA CTC TAT CTG ATC CAA GGC ACT CAG GTC TAC ATC TTC CTG ACA AAG GGA GGT TAT CCC CTA GTA GAA GGT TAT CCA AAG CGG CTG GAG AAG GAG ATT GGG AGC CCC GAG GGG ATC AGC CTG GCT TCT GTG GAT GCA ACT TTT GTC TGT CCT GGG TCT TCT CGG CTC CAT GTC ATG GCA GGA CGG AAA CTG TGG TGG CTG GAC CTG AAG TTG GGA GCA CAA GCC ACG TGG ACG GAA CTT CCT TGG CCT CAT GAG AAG GTT GAT GGA GCC CTG TGT ATG GAA AAG CCC ATT GTC CCC AAC TCA TGT TCC ACT AGT GGT CCC AAC TTA TAC CTC ATT CAC GGT CCC AAT TTG TAC TGC TAC AGT GAC GTG GAG AAA CTG ACC GCA GCC AAG GCC CTT CCC CAG CCC CTG AGA GTG GCT --- GAC CTC CTG GGC TGC AGT CAC --- --- --- --- 
S_scrofa                                   ATG GCT CGG GCG CTG GGA ACA GTG GGG GCA CCG TGG CTG TTG GGG CTC TGC TGC TCT CTG GCC ATC GCC CAC CCT CTT TCT CTG ACT GCT GGC CCT AAG CAC GGA GCT GAA GGC AGG AAT GAG TCC AAG CCG GAC CCA GAC GTG ACC --- GAA CGC TGC TCG GAT GGC TGG GGC TTC GAC GCC AGC ACC CTG GAT GAG CAC GGG GCT ATG CTG TTT TTC AAA GGG CCG TCT GTG TGG GCG GGT CAA AAC TGG ACC CGG GGG TTA ATC TCA GAG AGG TGG AAA AAC GCC CCC AGC TCC GTG GAC GCC GCC TTC CGC CGT GGT --- --- --- --- --- --- --- CAC GAC AGA GTC TTT CTC ATC CAG GGG GAC AAG GTC TGG GTC TAC CCT CCA GAG AAG --- GAG AAA GAA AAT CCA AGG --- TCG CTC CAA GAG GAG TTT CCT GGA GTC CCA TCC CCA CTG GAT GCT GCA GTG GAA TGT CAC CGT GGA GAA TGC CAA GAT GAG GGC GTC CTC TTC TTC CAA GCA GGC ACC CAC ACC TGG TTC TGG GAC TCC ACG ACA AAA ACC ACA AAG GAG CGC CTC TGG CCG GCC GTG GGC AAC TGC TCC TCC GCC ATG CGA TGG ATC AGC CGC TAC TAC TGC TTC CGG GGT AAC CAG TTC CTG CGC TTT GAC CCC GTC ACG GGA CAT GTG GAT CCC AAA TAC CCT CGG GAT GTC CGC GAC TAC TTC ATG TCC TGC CCG GAC AGA GGC CAT GCA --- CAC AGG AAC GCA ACC CAC CGT GGG GAT GAC --- --- --- --- --- --- --- --- CGC TGT AGC CCA GAC CTG GTC TTG ACT GCA CTG CTG TCT GAC AAC CAC GGT GCC ACC TAC GCC TTC CGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAC GGG TGG CAC AGC TGG CCC ATT GAC CAT CAG TGG TCC CAC GGT CCT TCG GCC GTG GAT GCT GCC TTT TCC TGG GAT GAC AAG CTC TAT CTG ATC CAG GGC ACC CAG GTC TAT ATC TTC CTG ACA AAG GCG GGC TAC ACC CTG GTA GAC AAT TAC CCA AAG CAG CTG GAG AAG GAG CTC GGG AGC CCT CAC GGC ATC AGC CTT GAC GCT GTG GAT GCG ACC TTT GTC TGT CCT GGG ACG TCT CGG CTC CAC GTC ATG GCA GGA CGG AAG CTG TGG TGG CTG GAC CTG AGT TTA GGC GCT CAA GGC CCG TGG ACA GAG CTT CCC TGG CCG CAT GAG AAG GTC GAT GCA GCC CTG TGC ACG GAA AAG TCT CTC GGC CCC AAC TCG TGT TCC GCC AGC GGC CTC GGC CTG TAC ATC GTC CAC GGC CCC CAC GTC TAC TGC TAC AAA GAC GTG GAG AAA CTG GTC TCG GCC AAG GCG CTG CCC CAG CCC CAG AGC GTA AAC --- AGC CTG CTG GGC TGC CAT CGG TCT CGG GGC TCC 
C_griseus                                  ATG GCT AGG ACG GTG GTA TCA CCA GTA ACC CTG GTG TTG CTG GGC CTG TGC TGG TCC CTG GCT GTT GCC AAC CCT CTT CCT --- --- TCT GCC CGT GGG AAT GTT GCT GAA GGT GAA AGT GAG ACC AAG CCA GAC TCA GAT GTA ATC --- GAG CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT GCC ACC CTG GAT CAC AAT GGG ACC ATG CTG TTC TTT AAA GGG GAG TTC GTG TGG AAG GGT TAC ACA TGG ATC AGA GAA ACA ATC TCA GAG AGA TGG AAG AAT TCC ACC AGC TCA GTG GAT GCT GCA TTC CGT CGT GGT --- --- --- --- --- --- --- CCT GAC AGT GTT TTC CTG ATC AAG GGA GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAA AAC GGA TAT CCA AAG --- TTG CTC CAA GAA GAA TTT CCT GGA ATC CCA TAC CCA CTG GAT GCG GCT GTG GAA TGC CAT TAT GGA GAA TGC CCG AGT GAA GGC ATA CTC TTC TTT CAA --- GGT AAC CGC AAG TGG TTC TGG GAC TTT GCT ACA AGA ACC ATA AAA GAA CGG TCC TGG CCA GCT GTT GGG AAT TGC ACC TCA GCC TTG AGG TGG CTT GAA CGC TAC TAT TGC TTC CAG GGT AAC CAG TTC CTG CGC TTC AAC CCA GTC ACA GGA GAG GTG CCT CCC AGA TAC CCT CTG GAT GCC CGT GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGT AGA CAC AGA AAT GCA ACT GGT CAC AGG AAT AGC ACC CAT --- --- CCT ATG CAT TCC CGC TGT AGC CCA GAT CCT GGC TTG ACT GCA TTA ATG TCT GAC CAC CGT GGT GCC ACC TAT GCC TTC ACT GGC TCC CAC TAC TGG CGT CTG GAC TCC AGC CGT GAT GGT TGG CAT AGC TGG CCC ATT GCT CAT CAC TGG CCC CAG GGG CCT GCA ACA GTA GAT GCT GCC TTT TCC TGG GAT GAT AAA GTC TAT CTC ATC CAG GGC ACT CAA GTG TAT GTC TTC CTG ACA AAG GGA GGC AAT ACC CTA GTA AAT GGT TAT CCA AAG CGG TTG GAG AAG GAA CTT GGG AGC CCT CCT GGG ATC AGC CTG GAG ACT GTG GAT TCA ACC TTT ACC TGC CCT GGT TCT TCC AGG CTC TAT GTT ACA GCA GGA CGG CGG CTA TGG TGG CTG GAC CTG AAG TTG GGT GTT CAG GCG ACA TGG ACA GAG CTT TCT TGG CCC CAT GAG AAA ATT GAC GGG GCT CTG TGT TTG GAA AAG TCC CTT GGT CCC AAC TCA TGT TCT TCC AGT GGT CCC AGT TTG TAC CTT ATC CAC GGG CCC AAT TTG TAC TGC TAC AGC AGT ATA GAC AAA CTG AAT GCT GCC AAG ATT GTT TCT CAG CCC CAG AAA GTA AAC --- AGC CTC CTT GGG TGC AGT CAG --- --- --- --- 
H_glaber                                   ATG GCT AGG GCA CTG ATG GCA CCA ATT GTA CTT GTG TGG CTG GGC CTG TGC TGG TCT CTA GCC ACT GCC AAC CCT CTT CCT CCG ACT AGT GCA CAT GGG AAC GTC ACT GAA GGT GAG AGT GGG ACC AAG ACA GAC CAA GAT GTG ACC CAC GAA CAC TGC TCA GAT GGC TGG AGC TTT GAC GCC ACC ACC CTG GAT GAC CAT GGG GCC ATG CTG TTT TTT AAA GGG GAA TTC GTA TGG AAG AGT CAC AAA TGG ACC AAG GAG TTG ATC ACA GAG AGG TGG AGG AAT TCC ACC AGC TCC GTG GAT GCA GCA TTC CGC CGT GGT --- --- --- --- --- --- --- CAC AAC AGT GTC TTG CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAG AAA GGA TAT CCA ACA --- TTG CTC CAA GAC GAA TTT CCC GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGC CAG GAG GAA GGC ATT CTC TTC TTT CAA --- GGT AAC CGC AAG TGG TTC TGG GAC GTG GCT ACA GGA ACC AAA AAG GAG CGT ATC TGG CCA GCT GTT GGG AAC TGC ACC TCT GCC CTG CGG TGG CTT GGC CGA TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CAC TTC AAC CCT GTC ACG GGA GAG GTG CCT GCC ATA TAC CCT CTG GAT GCC CGT GAC TAC TTC ATG CCT TGC CCT GGA AGA GGC CAC GGG --- AAC AGA --- --- ACT GGC CAT GGG AAC AGC ACC CAC CAT CAA CTT GAA AAT TCA CGC TGT AGC CCA AGT CTA GTC TTG TCT GCA TTG GTA TCT GAC AAC CAC GGT GCC ACC TAT GCC TTC AGT GGG TCC TAC TAC TGG CGT CTG GAT ACC AGC CGG GAT GGG TTT CAT AGC TGG CCC ATT GCT CAC CAG TGG ACC CAG GGC CCT TCA ATG GTG GAT GCT GCC TTT TCC TGG GAG GAT AAA CTC TAC CTG GTG CAG GGC ACC CAG GTA TAC ATC TTC CTG ACA AAG GGA GGC TAT CAT CTC GTA AGT GGT TAT CCT AAG CGG CTG GAG AAG GAA CTT GGG GGG CCT CAT GGG ATC AGC CTT ATG ACT GTG GAT GCA GCC TTT ACT TGT CCC GGA TCT TCC CAT CTC TAC ATC ATG GCA GGT CGG CGG CTG TGG TGG TTG GAC CTG AAG TTG GGT GCT CAA GCC ACG TGG ACA GAG CTT CCT TGG TCC CAT GAG AAC ATT GAT GGG GCC CTG TGT GTG GAA AAG TCC CTT GGC CCC ACC TCA TGT TCT GCC AGT GGT CCC AGC GTG TAC CTT ATC CAC GGC CCC AAT GTG TAC TGC TAC AGT GAT GTG GAG AAG CTG AGT GCA GCC AAG ACC CTC CCG CAG CCC CAG AGG GTA GCC --- AGC CTC CTG GGC TGC AGC CAC --- --- --- --- 
O_aires                                    ATG GCT CGG GCA TTG GGA GCG CCA GGT GCA CTG TGG CTG TTG GGC TTG TGC TGG TCT TTG GCC AAA GCC CAC CCT CTG GCT AGA GCT CCT GAG CAT GGG CAC GGA GTT GAA GGT GGG AAT GTG GCC GAG CCG GAT GCA GAT GTG ACA --- GAA CGC TGC TCG GAT GGC TGG GGC TTT GAT GCT ACC ACC CTG GAT GAG GAT GGA AAC ATG CTG TTT TTA AAA GGG GAG TTT GTG TGG AAG GGT CAT GCC TGG GCC CGG CAG TTA ATC TCA GAG AGG TGG AAG GAT GCC CCC AGT CCC GTG GAT GCT GCA TTC CGC TAT GAT --- --- --- --- --- --- --- CGT AAC AGT GTC CTT CTG ATC AAG GGG GAC AAA TTC TGG GTA TAT CCT CCT GAG AAG GGG CAA GAA --- TAT CCA AAG --- TTG CTC CAA AAG AAG TTT CCT GGA ATC CCA TTC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGC GGA GAA TGC TCT GAG GAG GGT GTC TTC TTC TTC CAA --- GGC AAC CAC ACG TGG TTC TGG GAC TTC TCT ACA AGT ACC ATA AAG GAA CGT TTC TGG CCG GCC GTT GGG AAC TGC TCC TCG GCC ATA CGA TGG CTC AAC CGC TAC TAC TGC TTC CGG GGT AAC AAA TTC CTG CGC TTC GAC CCC GTC GAG GGA AAA GTG AAT TCC AGT TAT CCT CGG GAT GTC CGA GAT TAC TTT ATG CCC TGC CCT AAC AGA GGC CAT GCA --- CAC AGG AAT GCA ACC CAG CAT GTG GAT AAG --- --- --- --- --- --- --- --- CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA TTG CTC TCT GAC AAC CAT GGT GYC ACC TAT GCT TTC AGT GAG AAC CAC TAC TGG CGT CTG GAC AGC AGC CAG GAC GGA TGG CAC AGC TGG CTC ATC GAG CAT CTG TGG CCC CAA GGC CCC TCA ACA GTG GAT GCT GCC TTC CTC TGG GAT AAA AAG CTC TAT CTG ATC CAG GGT ACC CAG GTA TAT ATC TTC CTG ACA AGG GCA GGC TAC ACT CTC GTA AAA GAT TAT CCA AAG CAG CTG GAG AAG GAA TTC GGG AGC CCT CAA GGG GTC AGC CTT CAT TCC GTG GAT GCA GCC TTT ACC TGT CCT GGA TCT TCT CAG CTC CAC ATC GTG GCA GGC CAG AAG CTG TGG TGG CTG GAC CTG AAG TTA GGA GCT CAA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAT ACG AAG GTC GAT GGG GCC CTG TGT ACA GAG AAG TCG CTG GGC CCC CAC TCG TGT TCC GCC AAT GGT CCG GGC TTG TAC CTT GTC CAA GGC CCC AAT CTG TAC TGC TAC AAA GAC GTG GAG GAA CTG AGC AAG ACC AAG GAC CTT CCC CAG GCC CAG AGG ATG AAC --- AGC CTC CTG GGC TGC GCT YCC TCC CAG CAC TCC 
M_fascicul                                 ATG GCT AGG GCA CTG GGA GCA CCC GTT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT CCG ACT AGT GCC CAT GGG AAT GTT GCT GAA GGT GAG --- --- ACC AAG CCA GAC CCA GAC GTG ACT --- GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACT ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GCC CGC GAG TTA ATC TCA GAG ACA TGG AAG AAT TTC ACC AGC CCT GTG GAT GCT GCA TTC CGT CAT GGT --- --- --- --- --- --- --- CAC CAG AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG AAG GAG AAA GGA TAC CCA AAG --- TTG CTC CAA GAT AAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC ATC CTC TTC TTC CAA --- GGT GAC CAC AAG TGG TTC TGG GAC TTG GCT ACG GGA ACT ATG AAG AAG CGT TAC TGG TCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC AAC CCT GTC ACG GGA GAG GTG CCT CCC AGG TAC CCG CTG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GAC AGA GGC CAT GGA --- CAC AGG AAT GGG ACT GGC CAT GGG AAT GGT ACC CAC CAT GGC CCT GAA TAT ATG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ATG TCT GAC AAC CAT GGT GCC ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACT CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCA AAG CGG CTG GAG AAG GAA GTC GGG AGT CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT GTC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCT CAA GCC ACA TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCT GCC AAT GGT CCC GGC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAA TCC CCT CCG CAG CCC CAG AAA GTG ACC --- AGT CTC CTG GGC TGC ACT TAC --- --- --- --- 



After deleting gaps. 1296 sites
     22   1296

A_melanole                                 ATT GCA CTG GGG TTG TTG GGC CTG TGC TGG TCT CTG GCT ATT GCC CAC CCT CTT CCT GGT ACC CCT GGG AAA GAG ACT GAA GGT GGG ACC AGA CCA GAT GTG ACC GAA CTT TGC TTG GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAA CAT GGG GCC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AGA TGG GTC CAG GAG TTA ATT TCA GAG AGG TGG AAG ACC AGC TCC GTG GAT GCT GCA TTC CGC GGT CAC AAC AGT GTC TTC CTG ATC AAG GGA GAC AAA GTC TGG GTG TAT CCT CCT GAG AAG GAG AAA TAT CCA AAG TTG CTC CAA GAA GAG TTT CCT GGA ATC CCA TCC CCA GTG GAT GCA GCT GTG GAA TGC CAC CGT GGA GAA TGC CAA GAT GAG GGC GTC CTC TTC TTC AAA GGT AAC CAA ACG TGG TTC TGG GAC TTG GCT ACG GGA ACC AAA AAG GAG CGT TCC TGG CCA GCT GTT GGG GAA TGC TCC TCT GCC ATG CGA TGG CTC AGC CGC TAC TAC TGT TTC CGG GGT AAC CAA TTC CTG CGC TTC CAC CCC GTC ACG GGA GAC GTG CTT CCA AAG TAC CCA CTG GAT GTT CGA GAC TAC TTC ATA CCC TGC CCT GGC AGA GGC CAC GGA CAC AGG ACG GGT CAT GGG AAT GGT CGC TGT AGC CCA TAT CTA GTC TTG TCT GCA CTG CTG ACT GAT AAC CAC GGT ACA TAT GCC TTC AGT GGG TCC CAC TAC TGG CGT CTG GAC ACT AGC CGG GAT GGG TGG CAT AGC TGG CCC ATT GTC CAT CAG TGG CCC CAA GGT CCT TCA ACA GTA GAT GCT GCC TTT TCC TGG GAC AAT AAA GTC TAC CTA ATC CAG GGC ACT CAG GTA TAT ATC TTC CTG ACA AAG GGA GGC TAT ACT CTA GTA GAT GGT TAT CCA AAG AGG CTG GAG AAG GAA TTT GGG AGT CCT CAT GGG ATC AAC CTT GAT GCT GTG GAT GCA GCC TTT ACT TGT CCT GGG ACT TCT CGG CTC CAC ATT ATG GCA GGA CGG AAG CTG TGG TGG CTG GAC CTG AAG TTA GGA GCT CAA GCC ACG TGG ACG GAG CTT CCT TGG CCC CAT GAG AAG GTT GAC GGG GCC CTG TGT ATG GAA AAG TCC CTC GGC CCC ACC TCA TGT TCT GCC AAT GGT CCC TTG TAC CTC ATC CAT GGC TCT GAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AGC ACA GCC AAG ACC CTT CCT CAG CCA CAG AGA GTG GAG AGC CTG CTG GGC TGC AAT 
B_taurus                                   GTT GCA CTG TGG CTG TTG GGC TTG TGC TGG TCT TTG GCT AAA GCC CAC CCT CTG GCT CCT GAG CTT GGG CAC GGA GTT GAA GGT GGG GCC AAG CCA GAA GTG ACG GAA CGC TGC TCG GAT GGC TGG GGC TTT GAT GCT ACC ACC CTG GAT GAG CAT GGG AAC ATG CTG TTT TTA AAA GGG GAG TTT GTG TGG AAG GGT CAT GCC TGG GCC CGG CAG TTG ATC TCA GAG AGG TGG AAG CCC AGT CCC GTG GAT GCT GCA TTC CGC GAT CGT AAC AGT GTC CTT CTG ATC AAG GGG GAC AAA TTC TGG GTA TAT CCT CCT GAG AAG GAG GAA TAT CCA AAG TTG CTC CAA GAG AAG TTT CCT GGA ATC CCA TTC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGC GGA GAA TGC TCT CAT GAG GGT GTC TTC TTC TTC CAA GGC AAC CAC ACG TGG TTC TGG GAC TTC TCT ACA AAA ACC ATA AAG AAA CGT TCC TGG CCA GCC GTT GGG AAC TGC TCC TCG GCC ATA CGA TGG CTC AAC CGC TAC TAC TGC TTC CGG GGT AAC AAA TTC CTG CGC TTC GAC CCC GTC ACG GGA GAA GTG AAT TCC ACT TAT CCT CGG GAT GTC CGA GAT TAC TTT ATG TCC TGC CCT AAC AGA GGC CAT GCA CAT AGG ACC CAG CAT ATG GAT AAG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA TTG CTT TCT GAC AAC CAT AGT ACC TAC GCT TTC AGT GAG AAC CAC TAC TGG CGT CTG GAC AGC AGC CGG GAC GGG TGG CAC AGC TGG CGC ATT GAG CAT CTG TGG CCC CAA GGT CCC TCA ACA GTG GAT GCT GCC TTT CTC TGG GAT AAA AAG CTC TAC CTC ATC CAG GGT ACC CAG GTA TAT ATC TTC CTG ACA AGG GCA GGC TAC ACT CTC GTA AAA GAT TAT CCA AAG CAG CTG GAG AAG GAA TTT GGG AGC CCT GAT GGG GTC TGC CTT CAT TCT GTG GAT GCA GCC TTT ACC TGT CCT GGA TCT TCT CAG CTC TAC ATC ATG GCA GGC CAG AAG CTG TGG AGG CTG GAC CTG AAC TTA GGA GCT CAA GCC ACG TGG ACA GAG CTT CCT TGG CTC CAT ACG AAA GTC GAT GGG GCC CTG TGT ACA GAG AAG TCT CTG GGC CCC CAC TCG TGT TCT GCC AAT GGT CTG TTG TAC CTC GTC CAA GGC CCC AAT CTG TAC TGC TAC AAA GAT GTG GAG GAA TTG AGC AAG ACC AAG GAC CTT CCC CAG GCC CAG AGG ATG AAC AGC CTC CTG GGC TGC GCT 
C_familiar                                 TGG GCA CTG GGG TTG TTG GGC CTG TGC TGG TCT CTG GCT GTT GCC CAC CCT CTT TCT GGT ACC CAT GGG AAT GGA ACT GAA GGT GGG GCC AGA CCA GAT GTG ACC GAA CTC TGC TTG GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAA CAT GGG GCC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AGA TGG GTC CGG GAG CTA ATC TCA GAG AGG TGG AGG ACC AGC CCC GTG GAT GCG GCC TTC CGC GGT CAC AAC AGT GTC TTC CTG CTC AAG GGA GAC AAA GTC TGG GTG TAT CCT CCT GAG AAG GAA CAA TAT CCA AAG TTG CTC CAA GAA GAG TTT CCT GGG ATC CCA TCC CCT GTG GAT GCA GCT GTA GAA TGT CAC CGT GGG GAA TGC CAA GAT GAA GGT GTC CTC TTC TTC AAA GGT AAC CAA ACA TGG TTC TGG GAC TTG ACA ACG GGA ACC AAA AAG GAA CGT TCC TGG CCA GCT GTT GGG CAC TGC TCC TCT GCC TTA CGA TGG CTC AGC CGT TAC TAC TGC TTC CGG GGT AAC CAA TTC CTG CGG TTC AAC CCT GTC ACG GGA GAG GTG CTT CCA AAG TAC CCT CTG GAT GTT CGA GAC TAC TTC ATA CCT TGC CCT GGC AGA GGT CAT GGA CAC AGG ACA GGC CAT GGG AAT GAT CGC TGT AGT GCA TTT CTA GTC TTG TCT GCA CTG CTG ACT GAC AAC CAT GGT ACA TAT GCC TTC AGT GGG TCC CAC TAC TGG CGT CTG GAC ACC AGT CGG GAT GGG TGG CAC AGC TGG CCC ATT GTC CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAC AAT AAA GTC TAC CTA ATC CAA GGC ACT CAG GTA TAT ATC TTC CTG ACA AAG GGA GGC TAT ACT CTA GTA GAT GGT TAT CCG AAG AGG CTG GAG AAG GAA TTT GGG AGC CCT CAT GGG ATC AAC CTT GAG ACT GTG GAT GCA GCC TTT ACT TGT CCT GGG ACT TCT CGT CTC CAC ATT GCA GCA GGA CGA CAT CTG TGG TGG CTG GAC CTG AAG TTA GGA GCT CAA GCC ACA TGG ACG GAG GTT CCT TGG CCA CAT GAG AAG GTT GAC GGG GCC CTG TGT ATA GAA AAG TCC CTC GGC CCC AAC TCA TGT TCT GCC AAT GGT CCC TTA TAT CTC ATC CAT GGC TCC GAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AGC ACA GCC AAG TCC CTT CCA CAG CCC CAG AGA GTG AAG AGC CTC CTG GGC TGC AAT 
C_jacchus                                  ATT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCG AAC CCT CTT CCT AGT GCC CAC GGG AAT GTT GCT GAA GGC GAG ACC AAG CCA GAT GTG ACT GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTC GTG TGG AAG AGT CAC AAA TGG GAA CGG GAG TTA ATC TCA GAG AGA TGG AAG ACC AGC CCT GTG GAT GCT GCA TTC CGT GGT CAC AGC AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAA GAG AAA TAC CCA AAG TTA CTC CAA GAG GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GAT GAA GGC GTC CTC TTC TTC CAA GGT GAC AGC GAA TGG TTC TGG GAC TTG ACT ACG GGA AAC ATA AAG AAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCC GCC CTG AGA TGG CTG GGT CGC TAC TAC TGC TTC CAG GGT AAC AAA TTC CTG CGC TTC AAT CCT GCT ACG GGA GAG GTG CCC CCT AGG TAC CCT CTG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA CAC AGG ACT GGC CAT GGG AAC AGG CGC TGT AGC CCA GAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT ACC TAT GCC TTC AGT GGA GCC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG ATA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGT GGT TAT CCA AAG CGG CTG GAG AAG GAA GTC GGG AGC CCT CCT GGG ATC AGC CTG GAG TCT GTG GAT GCG GCC TTT GTC TGC CCT GGG TCT TCT CAG CTC CAC ATC ATG GCA GGA CGG CGG CTG TGG AGG CTG GAC CTA AAG TCA GGA GCT CAA GCC ATG TGG ACG GAG CTT CCT TGG CCC CAT GAT AAG GTG GAT GGG GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAT TCA TGT TCT GCC AAT GGT CCC TTG TAC CTC ATC CAT GGC CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG ACC CTT CCA CAG CCC CAG AAA GTG GCC AGT CTC TTG GGC TGC ACT 
C_porcellu                                 ATT GTA CTT GCA TTG TTG AGC CTG TGC TGG TCT CTG GCC ACT GCC ACC CCT CTT CCT AGT ACG CAT GGG AAT GTC ACT GAA CAT GAG ACC AAG CAA CAT GTG ATC GAA TAC TGC TCA GAT AGC TGG AGC TTC GAT GCC ACC ACC ATA GAT GAC AGT GGA GCC ATG CTA TTT TTT AAA GGG GAA TAC GTA TGG AAG AGT CAC AAA TGG ACC AAG GAG TTA ATA TCA GAG AGG TGG AAG ACC AGC TCT GTG GAT GCA GCA TTC CGC GGC CAT GAC AGT GTC TTC CTG ATT AAG GGG GAC AAA GTC TGG GTG TAC CCT CCT GAA AAG GAG AAA TAT CCA ACA CTG CTC CAA GAT GAA TTT CCT GGA ATT CCA TCC CCT CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGC CAG GAG GAA GGC ATT CTC TTC TTC CAA GGT AGC CGC ACG TGG TTC TGG GAC CCT ACT ACA AGA ACC AAA AAA GAG CGT TTC TGG CCG GCT GTT GGA AAC TGC ACC TCT GCT CTG CGG TGG CTT GGC CGC TAC TAC TGC TTC CAG GGT AAC CAG TTC CTG CGC TTC AAC CCC ATC ACG GGA GAG GTG CCT GCC CGT TAC CCT CTG GAT GCT CGT GAC TAC TTC ATA CCC TGT CCT GGC AGA GGC CAC AAG AAC AGA ACT GGC CAT GGA AAC AGC CGC TGC AGC CCG CAT CTA GTC TTA TCT GCA TTG GTA TCA GAC ACC CAT GGT ACC TAT GCC TTC AGT GGG CCC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAC GGG TGG CAT AGC TGG CCC ATC GCT CAT CAG TGG CCC CAG GGC CCT TCC ACG GTG GAC GCT GCC TTT TCC TGG GAG GAT AAA CTC TAC CTG CTA CAG GGC ACC CAG GTG TAT GTC TTC CTG ACC AAG GCA GCC CAC ACC CTC GTG AGT GGT TAC CCG AAG CGG CTG GAG AAG GAG CTC GGG GGC CCT CAT GGG ATC AGC CTT AAG GCC GTG GAC GCA GCC TTC ACT TGT CCT GGG TCT TCT CAG CTC TAT GTC ACA GCC GGT CGG CGG CTG TGG TGG TTG GAC CTG AAG CTG GGG CCT CAG GCC ACA TGG ACA GAG CTC CCA TGG GCC CAT GAG GAC ATC GAC GCG GCC CTG TGT GTG GAA AAG TCC TTT GGC CTC AGC TCG TGT TCT GCT GCT GGC CCC CTA TAC CTT GTC CGG GGC CCC AAT GTG TAC TGT TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG ACC CTC CCG CAG CCG CAG AAG GTG GCC AGC CTC CTG GGC TGC GGC 
E_caballus                                 GTT GCG CTG GGG TTG TTG GGC CTG TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT AGT GCA CCT GGG ACC GGA GCT GAA GGT GGG GTC AAG CCA GAC GTG ATC GAA CGC TGC TCA GAT GGC TGG AGC TCT GAT GCT ACC ACC CTG GAT GAA CAT GGG GCC ATG GTG TTT TTC AAA GGG GAG TTC ATG TGG AAG AGT CCC AAC TGG ACC CGC GAA TTA ATC TCA GAG AGG TGG AAG ATT GGC CCT GCG GAT GCT GCA TTC CGC AGT AAT GAC AGC GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTG TAC CCT CCT GGG AAG GAG AAA TAT CCA AAG TTG CTC CAA GAG GAG TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGC CAA GAT GAG GGC ATC CTC TTC TTC AAA GGT AAC CGC ACC TGG TTC TGG GAC TTG GCT ACG AGA ACC ACA AAG GAG CGT TTC TGG CTT GCT GTT CAG AAT TGC TCC TCT GCC ATG CGA TGG CTC AAC CGC TAC TAC TGC TTC TCG GGT AAC AAG TTC CTG CGT TTC AAC CCC GTC TCA GGA GAG GTA CCT CCC AAG TAC CCT CTG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAC AGA AAC AGG ACT GGC CAC GGG ACT GGT CGA TGT AGC CCA GAT CTA GCC TTG TCT GCA TTG GTG TCT GAC AAC CAT GGT ACC TAC GCC TTC AGT GAG TCT CAC CAC TGG CGC CTG GAC ACC AGC AAG GAT GGG TGG CAT AGC TGG CCC ATT GAC CAT CAG TGG CCC AAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAT GAT AAA CTC TAT CTG ATC CAG GGC ACT CAG GTA TAT ATC TTC CTG ACG AAG GGA GGC CAT ACC CTA GTA GAT GGT TAT CCA AAG CGG CTG GAG AAG GAA CTC GGG AGC CCT CAT GGG ATC AGC CTT GAG ACT GTG GAC GCA GCC TTT ATG TGT CCT GGG TCT TCT CGG CTC CAC GTT ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCT GCA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAC GAG AAG GTT GAC GGG GCC CTG TGT GTG GAA AAG TCC CTC GGC CCT CAC TCA TGT TCT GCC AAC GGT CTC TTG TAC CTC ATC CAA GGC CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAA GCC CTT CCC AAG CCC CAG AGA ATG AAC AGC CTC CTG GGC TGC CAT 
G_gorilla                                  GTT GCA CTG GGG TTG TGG AGC CTA TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG ACC AAG CCA GAC GTG ACT GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGG GAG TTA ATC TCA GAG AGA TGG AAG CCC AGC CCT GTG GAT GCT GCA TTC CGT GGT CAC AAC AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAG AAA TAC CCA AAG TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA GGT GAC CGC GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC GAC CCT GTC AGG GGA GAG GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA CAC AAG ACT GGC CAT GGG AAC AGT CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCG AAG CGG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT ATC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCC CAA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT ATG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG ACC CTT CCG CAA CCC CAG AAT GTG ACC AGT CTC CTG GGC TGC ACT 
H_sapiens                                  GTT GCA CTG GGG TTG TGG AGC CTA TGC TGG TCT CTG GCC ATT GCC ACC CCT CTT CCT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG ACC AAG CCA GAC GTG ACT GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGG GAG TTA ATC TCA GAG AGA TGG AAG CCC AGC CCT GTG GAT GCT GCA TTC CGT GGT CAC AAC AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAG AAA TAC CCA AAG TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA GGT GAC CGC GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC GAC CCT GTC AGG GGA GAG GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA CAC AGG ACT GGC CAT GGG AAC AGT CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA GCA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCG AAG CGG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT ATC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCC CAA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTA GAC GGA GCC TTG TGT ATG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG GCC CTT CCG CAA CCC CAG AAT GTG ACC AGT CTC CTG GGC TGC ACT 
M_lucifugu                                 GTT GCC CTG GGG CTG TTG AGC CTG TGC TGG TCT CTG GCC ATT GCC CAC CCT GTC ACT GGT TCC TCT GGG AGT GGA GCT GAA GGT GGG AAC CAG ACA GAC ATG CGG GAA CTC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACT ACT CTG AGT GAA AAT GGG ACC ATG TTA TTT TTT AAA GGG GAG TAC ATG TGG ACA GCT CAC CAC TGG GGC CGG GAG TTG ATT TCA GAG AAG TGG AAG ACC AGC TCC GTG GAT GCC GCC TTT CGC AAT CAA GAC AGT GTC TTC GTG ATC AAG GGG GAC AAA GTC TGG GTG TAC CCT CCT AAG GAG GAG GAG TAC CCA AAG TTG CTC CAA GAT GAG TTT CCT GGA ATC CCA TCC CCA GTG GAC GCA GCT GTG GAA TGT CAC CGT GGA GAA TGC AAG AGT GAG GGC ATC CTC TTC TTC CAA GGT AAC CAC ACG TGG TTC TGG GAC TTG GCT ACA AAA ACC GTA AAG GAA CGT GAC TGG CCA GCT GTT TGG AAT TGC TCC TCT GCC ATT CGA TGG ATT GAC CGC TAC TTC TGC TTC CGG GGT AAC CAA TTC CTA CGC TTC GAC CCT GTC ACG GGA GAG GTG CTT CCT AGG TAC CCT CTG GAT ATC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA CAC AGA ACC AGC CCT GGA AAT GGT CGC TGT AAC CCA GAT GTA GTC TTG TCT GCA CTG GTG TCT AAC AAC TAT GGT ATC TAT GCC TTC AGT GGG TCC AAC TAC TGG CGT TTG GAC AGC AGC AAG GAT GGG TGG CAT AGC TGG CCC ATT GTC CAT CAG TGG CCC AAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAT GAT AAA CTC TAT CTG ATC CAG GGC ACT CAG ATA TAT ATC TTC CTG ACA AAG GGA GGC CAT ACC CTA GTA GAT GGA TAT CCA AAA CGA CTG GAG AAG GAG TTA GGG AGC CCT CCT GGG ACC AGC CTT TTG GCT GTG GAT GCA GCC TTT ATC TGT CCT GGG TCT TCT CGA CTT CAC ATC ATG GCA GGA CGA CAG CTG TGG TGG CTG GAC ATG AAG TTA GGA GCT CAA GCG ACA TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTT GAT GGG GCC CTG TGC ATG GAA AAG TCC CTT GGC CCC AAC TCA TGT TCT GCC AAT GGC TCC TTA TAC CTC ATC GAT GGC CAA AAT TTG TAC TGC TAC AGC AAT GTG GAG GAA CTG AGT GCA GCC AAA GCC CTT CCC CAG CCC CTG AGA ATG AAC AGC CTC CTG GGC TGC AGT 
M_mulatta                                  GTT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT AGT GCC CAT GGG AAT GTT GCT GAA GGT GAG ACC AAG CCA GAC GTG ACT GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GCC CGC GAG TTA ATC TCA GAG ACA TGG AAG ACC AGT CCT GTG GAT GCT GCA TTC CGT GGT CAC CAG AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAG AAA TAC CCA AAG TTA CTC CAA GAT AAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC ATC CTC TTC TTC CAA GGT GAC CAC AAG TGG TTC TGG GAC TTG GCT ACG GGA ACT ATG AAG AAG CGT TAC TGG TCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC AAC CCT GTC ACG GGA GAG GTG CCT CCC AGG TAC CCG CTG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA CAC AGG ACT GGC CAT GGG AAT GGT CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ATG TCT GAC AAC CAT GGT ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACT CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCA AAG CGG CTG GAG AAG GAA GTC GGG AGT CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT GTC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCT CAA GCC ACA TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCT GCC AAT GGT CCC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAA TCC CCT CCG CAG CCC CAG AAA GTG ACC AGT CTC CTG GGC TGC ACT 
M_musculus                                 AAT ATC CTG GTG TTG CTG GGC CTG TGC TGG TCC CTG GCT GTT GCC AGC CCT CTT CCT ACT GCC AAC GGG AGA GTT GCC GAA GTT GAA ACC AAG TCA GAT GTA CCC GAA CAC TGC TTG GAT ACC TGG AGC TTT GAT GCT GCG ACC ATG GAT CAC AAT GGG ACC ATG CTG TTC TTT AAA GGG GAG TTT GTG TGG AGG GGT CAC TCA GGG ACC CGG GAG TTG ATC TCA GCG AGG TGG AAG ATC ACC TCA GTG GAT GCT GCA TTC CGT GGT CCT GAC AGT GTC TTC CTG ATC AAG GAA GAC AAA GTC TGG GTG TAC CCT CCT GAA AAG GAA AAC TAT CCA AAG TTG TTC CAA GAA GAG TTT CCT GGA ATC CCA TAC CCA CCA GAC GCA GCT GTG GAA TGC CAC CGT GGA GAG TGC CAG AGT GAA GGC GTC CTT TTC TTC CAA GGT AAC CGC AAG TGG TTC TGG GAC TTT GCC ACA AGA ACC CAA AAG GAA CGT TCC TGG TCA ACT GTT GGG AAT TGC ACT GCG GCC TTG AGG TGG CTT GAA CGC TAC TAC TGC TTC CAG GGT AAC AAG TTC CTG CGA TTC AAC CCT GTC ACA GGA GAG GTG CCT CCC AGA TAC CCT CTG GAT GCC CGT GAC TAC TTC GTA TCC TGC CCT GGC AGA GGC CAT GGT CCC AGA ACT GCT CAT GGA AAT AGC CGT TGT AGC CCA GAT CCT GGC CTG ACT GCA CTG CTG TCT GAC CAT CGC GGT ACC TAT GCC TTC ACT GGC TCC CAC TAC TGG CGT CTG GAC TCC AGC CGT GAT GGA TGG CAT AGC TGG CCC ATT GCT CAT CAC TGG CCT CAG GGT CCT TCA ACA GTA GAT GCT GCC TTT TCC TGG GAT GAT AAA GTC TAT CTG ATC CAG GGC ACT CAA GTG TAT GTC TTC CTG ACA AAG GGA GGC AAT AAC CTA GTA AGT GGT TAT CCA AAG CGG CTG GAG AAG GAA CTT GGG AGC CCT CCT GGG ATC AGC CTT GAG ACC ATA GAT GCA GCC TTT TCC TGC CCT GGT TCT TCC AGG CTC TAT GTC TCA TCA GGA CGG CGG CTT TGG TGG CTG GAC CTG AAG TCA GGA GCC CAG GCA ACA TGG ACA GAG GTT TCC TGG CCC CAT GAG AAA GTT GAT GGG GCC CTG TGT TTG GAC AAG TCT CTT GGC CCC AAC ACA TGT TCT TCC AAT GGT TCC TTG TAC TTT ATC CAT GGG CCC AAT TTG TAC TGC TAT AGC AGT ATA GAC AAA CTG AAT GCA GCC AAG AGT CTG CCT CAG CCT CAG AAG GTG AAC AGC ATC CTT GGC TGC AGT 
N_leucogen                                 GTT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG ACC AAG CCA GAC GTG ACT GAA CGC TGC TCA GAT GGC TGG AGC CTT GAT GCC ACC ACC CTG GAT GAC AGT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGC GAG TTA ATC TCA GAG AGA TGG AAG CCC AGC CCT GTG GAT GCT GCA TTC CGT GGT CAC AAC ACT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAG AAA TAC CCA AAG TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAG TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA GGT GAC CGT GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGC AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTT GAC CCT GTC AGG GGA GAA GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA CAC AGG ACT GGC CAT GGG AAT GGT CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT ACC TAT GCC TTC AGT GGG TCC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTA CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GCA AGC GGT TAT CCG AAG CGG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT GTC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTA TGG TGG CTG GAC CTG AAG TCA GGA GCT CAA GCC ATG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC TTG TAC CTC ATC CAT GGT CCC AAC TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAC GCA GCC AAG GCC CTT CCG CAG CCC CAG AAC ATG ACC AGT CTC CTG GGC TGC ACT 
O_cuniculu                                 ATT GCA TTG GGG GTT TGG GGC CTG TGC TGG TCT CTG GCC ACT GTC AAC TCT GTT CCT AGT GCC CAT GGG AAT GTT ACT GAA GGT GAG ACC AAG GCA GAT GTG ATC GAA CAG TGC TCA GAT GGT TGG AGC TTT GAT GCC ACC ACC CTG GAT GAC AAT GGG ACC ATG CTG TTT TTT AAA GAT GAG TTC GTG TGG AAG AGT CAC AGA GGG ATT CGG GAG TTG ATC TCA GAG AGG TGG AAG ATC GGT CCT GTG GAT GCT GCT TTC CGC GGT CAT ACC AGT GTT TAC CTG ATT AAG GGG GAC AAA GTC TGG GTA TAC ACT TCT GAA AAG GAG AAA TAT CCA AAG TCC CTC CAA GAT GAG TTT CCT GGA ATC CCA TTC CCA TTG GAT GCA GCT GTG GAG TGT CAC CGT GGA GAA TGC CAA GAT GAA GGC ATC CTC TTC TTC CAA GGT AAC CGC AAG TGG TTC TGG GAC TTG ACT ACT GGA ACA AAG AAG GAG CGT TCT TGG CCG GCA GTT GGG AAC TGC ACC TCT GCC CTG CGA TGG CTC GGC CGC TAC TAT TGC TTC CAG GGT AAC CAG TTC CTC CGC TTC AAT CCG GTC TCG GGA GAG GTG CCT CCT GGG TAC CCT CTG GAT GTC CGA GAC TAC TTC CTA TCC TGC CCT GGC AGA GGT GAA GGA CAC AGA TCA AGC CAT AGG AAC AGT CGC TGC GAC CCA GAT CTA GTC TTG TCT GCA ATG GTG TCT GAC AAC CAT GGT ACT TAT GTC TTC AGT GGG TCC CAC TAC TGG CGC CTG GAC ACC AAC CGG GAT GGG TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCA CAA GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAG GAT AAA CTC TAT CTG ATC CAG GAC ACC AAG GTA TAT GTC TTT CTG ACA AAA GGA GGC TAT ACC CTG GTA AAT GGT TAC CCA AAG CGG CTG GAG AAG GAA CTT GGA AGC CCT CCT GGG ATA AGC CTT GAG GCT GTG GAT GCG GCC TTT GTC TGT CCT GGG TCT TCT CGG CTC CAC ATC ATG GCA GGA CGG CGT CTG TGG TGG CTG GAC CTG AAG TCT GGA GCT CAA GCC ACG TGG ACA GAA CTT CCT TGG GCT CAT GAG AAG GTT GAC GGG GCC CTG TGT ATG GAA AAG CCC CTT GGC CCC AAC TCA TGT TCT ACC AGT GGT CCC TTG TAC CTC ATC CAT GGC CCC AAT TTG TAT TGC TAC AGC GAT GTG GAC AAA CTC AAT GCA GCC AAG AAC CTC CCC CAG CCC CAG AGA GTG TCC AGA CTC CTG GGC TGT ACT 
P_abelii                                   ATT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCC ACC CCT CTT CCT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG ACC AAG CCA GAT GTG ACT GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGG GAG TTA ATC TCA GAG AGA TGG AAG CCC AGC CCT GTG GAT GCT GCA TTC CGT GGT CAC AAC AGC GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAG AAA TAC CCA AAG TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA GGT GAC CGC GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC GAC CCT GTC AGG GGA GAG GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA CAC AGG ACT GGC CAT GGG AAC GGT CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCG AAG CAG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT ATC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCT CAA GCC TTG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG GCC CTT CCG CAG CCC CAG AAC GTG ACC AGT CTC CTG GGC TGC ACT 
P_troglody                                 GTT GCA CTG GGG TTG TGG AGC CTA TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT AGT GCC CAT GGG AAT GTT GCT GAA GGC GAG ACC AAG CCA GAC GTG ACT GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACC ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GAC CGG GAG TTA ATC TCG GAG AGA TGG AAG CCC AGC CCT GTG GAT GCT GCA TTC CGT GGT CAC AAC AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAG AAA TAC CCA AAG TTG CTC CAA GAT GAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAT CGT GGA GAA TGT CAA GCT GAA GGC GTC CTC TTC TTC CAA GGT GAC CGC GAG TGG TTC TGG GAC TTG GCT ACG GGA ACC ATG AAG GAG CGT TCC TGG CCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC GAC CCT GTC AGG GGA GAG GTG CCT CCC AGG TAC CCG CGG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGA CAC AGG ACT GGC CAT GGG AAC AGT CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ACG TCT GAC AAC CAT GGT ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA GCA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACC CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCG AAG CGG CTG GAG AAG GAA GTC GGG ACC CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT ATC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCC CAA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT ATG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCC GCC AAT GGT CCC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAG GCC CTT CCG CAA CCC CAG AAT GTG ACC AGT CTC CTG GGC TGC ACT 
R_norvegic                                 AAT ATC CTG GTA TTG CTG GGC CTG TGC TGG TCC CTG GCT GTT GCC AAC CCT CTT CCT GCT GCC CAT GAG ACT GTT GCT AAA GGT GAA ACC AAG TCA GAT GTA ATC GAA CAC TGC TCA GAT GCC TGG AGC TTT GAC GCT ACC ACC ATG GAT CAC AAT GGG ACC ATG CTG TTC TTT AAA GGG GAG TTT GTG TGG AGG GGT CAC TCA GGG ATC CGG GAG TTA ATC TCA GAG AGG TGG AAG GTC ACC TCA GTG GAT GCT GCA TTC CGT GGT CCT GAC AGT GTC TTC CTG ATC AAG GAA GAC AAA GTC TGG GTG TAT CCT CCT GAA AAG GAG AAC TAT CCA AAG TTG TTC CAA GAA GAG TTT CCT GGA ATC CCA TAC CCA CCA GAC GCA GCT GTG GAA TGC CAC CGT GGA GAA TGC CAG AGT GAA GGT GTC CTC TTC TTC CAA GGT AAC CGC AAG TGG TTC TGG GAC TTT GCC ACA AGA ACC CAA AAG GAA CGT TCC TGG CCT GCT GTT GGG AAT TGC ACT GCG GCC TTG AGG TGG CTT GAA CGC TAC TAC TGC TTC CAG GGT AAC AAG TTC CTG AGA TTT AAC CCC GTC ACA GGA GAG GTG CCT CCC AGA TAC CCT CTG GAT GCC CGT GAC TAC TTC ATA TCC TGC CCT GGC AGA GGC CAT GGT CTA AGA ACT GCT CAT GGG AAT AGC CGT TGT AAC GCA GAT CCT GGC CTG TCT GCA CTG CTG TCT GAC CAT CGA GGT ACC TAT GCC TTC AGT GGC TCC CAC TAC TGG CGT CTG GAC TCC AGC CGT GAT GGG TGG CAT AGC TGG CCC ATT GCT CAT CAC TGG CCC CAG GGT CCT TCA GCA GTA GAT GCT GCC TTT TCC TGG GAT GAG AAA GTC TAT CTG ATC CAG GGC ACT CAA GTA TAT GTC TTC CTG ACG AAG GGG GGC AAT AAC CTA GTA AGT GGT TAT CCA AAG CGG CTG GAG AAG GAA CTT GGG AGC CCT CCC GGG ATC AGC CTT GAT ACC ATA GAT GCA GCC TTT TCC TGC CCT GGT TCT TCC AAG CTC TAC GTC ACA TCA GGA CGG CGG CTT TGG TGG CTG GAC CTG AAG TCA GGA GCC CAG GCG ACA TGG GCA GAG CTT TCC TGG CCC CAT GAG AAA GTT GAT GGT GCC CTG TGT TTG GAA AAG TCC CTT GGT CCC TAC TCA TGC TCT TCC AAT GGT CCC TTG TTC TTT ATC CAT GGG CCC AAT TTA TAC TGC TAT AGC AGT ATA GAC AAA CTG AAT GCA GCC AAG AGT CTG CCT CAG CCC CAG AAA GTG AAC AGC ATC CTT GGC TGC AGT 
S_araneus                                  CTT GCA CTC GGG TTA TTG GGC CTA TGC TGG CCA CTG GCC CTC GCC CAC CCT CTT TCT GGT GGC CCC AGA AAC ACA GAC GAA GGG AGA ACC CAG CCA GAC ATG ACG GAA CTC TGC TCG GAT GAC TGG AGC TTC GAC ACT ATG ACC CTG GAT GAC AAC GGG GCC ATG CTG TTT TTC AAA GGG GAG TTC GTG TGG AGG AGT CAT AGC TGG ACC CGG GAG CTG ATC TCG GAC AGG TGG AAG AAC AGC TCA GTG GAT GCC GCC TTC CGC GGG CAC GAC AGC GTC TTC CTG ATC AAG GGG GAC AAA GTC TGG CTG TAT TCT CCT GAG ATG AAA GAA TAT CCA CAG CTG CTC CAA GAT GAG TTT CCC GGA ATC GCA TCA CCA CTG GAT GCA GCG GTG GAA TGT CAC CGT GGT GAA TGC CAA GAT GAA GGT GTC CTC TTC TTC CAA GGT AAC CGC ACA TGG TTC TGG GAC ATG ACC ACC AAA ACC AAA AAG GAA CGT TTC TGG CCG GCT GTT GGG AGC TGC TCC TCC GCC CTG CGA TGG CTC GGC CGC TAC TAC TGC TTC CGG GGT AAT CAG TTC CTG CGC TTC GAC CCC GTC ACG GGA GAG GTG CTT CCC AGG TAC CCT CTG GAT ATG CGA GAC TAC TTC ATG CCC TGT CCT GGC AGA GGC CAC GGA CAA AGG ACT AGG CCC AAG AAC AGT CGC TGT AGC CCG GAT CTA GTC TTG TCT GCA CTG CTG TTT GAC AAC CAT GGT ATT TAT GCC TTC ACT GGG AGC CAC TAC TGG CGT CTG GAC TCC AGA AAG GAT GGG TGG CAC AGC TGG CCC ATT TCT CAC GTG TGG TCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAG GAC AGA CTC TAT CTG ATC CAA GGC ACT CAG GTC TAC ATC TTC CTG ACA AAG GGA GGT TAT CCC CTA GTA GAA GGT TAT CCA AAG CGG CTG GAG AAG GAG ATT GGG AGC CCC GAG GGG ATC AGC CTG GCT TCT GTG GAT GCA ACT TTT GTC TGT CCT GGG TCT TCT CGG CTC CAT GTC ATG GCA GGA CGG AAA CTG TGG TGG CTG GAC CTG AAG TTG GGA GCA CAA GCC ACG TGG ACG GAA CTT CCT TGG CCT CAT GAG AAG GTT GAT GGA GCC CTG TGT ATG GAA AAG CCC ATT GTC CCC AAC TCA TGT TCC ACT AGT GGT CCC TTA TAC CTC ATT CAC GGT CCC AAT TTG TAC TGC TAC AGT GAC GTG GAG AAA CTG ACC GCA GCC AAG GCC CTT CCC CAG CCC CTG AGA GTG GCT GAC CTC CTG GGC TGC AGT 
S_scrofa                                   GGG GCA CCG TGG CTG TTG GGG CTC TGC TGC TCT CTG GCC ATC GCC CAC CCT CTT TCT GCT GGC CCT AAG CAC GGA GCT GAA GGC AGG TCC AAG CCA GAC GTG ACC GAA CGC TGC TCG GAT GGC TGG GGC TTC GAC GCC AGC ACC CTG GAT GAG CAC GGG GCT ATG CTG TTT TTC AAA GGG CCG TCT GTG TGG GCG GGT CAA AAC TGG ACC CGG GGG TTA ATC TCA GAG AGG TGG AAA CCC AGC TCC GTG GAC GCC GCC TTC CGC GGT CAC GAC AGA GTC TTT CTC ATC CAG GGG GAC AAG GTC TGG GTC TAC CCT CCA GAG AAG GAG AAA AAT CCA AGG TCG CTC CAA GAG GAG TTT CCT GGA GTC CCA TCC CCA CTG GAT GCT GCA GTG GAA TGT CAC CGT GGA GAA TGC CAA GAT GAG GGC GTC CTC TTC TTC CAA GGC ACC CAC ACC TGG TTC TGG GAC TCC ACG ACA AAA ACC ACA AAG GAG CGC CTC TGG CCG GCC GTG GGC AAC TGC TCC TCC GCC ATG CGA TGG ATC AGC CGC TAC TAC TGC TTC CGG GGT AAC CAG TTC CTG CGC TTT GAC CCC GTC ACG GGA CAT GTG GAT CCC AAA TAC CCT CGG GAT GTC CGC GAC TAC TTC ATG TCC TGC CCG GAC AGA GGC CAT GCA CAC AGG ACC CAC CGT GGG GAT GAC CGC TGT AGC CCA GAC CTG GTC TTG ACT GCA CTG CTG TCT GAC AAC CAC GGT ACC TAC GCC TTC CGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAC GGG TGG CAC AGC TGG CCC ATT GAC CAT CAG TGG TCC CAC GGT CCT TCG GCC GTG GAT GCT GCC TTT TCC TGG GAT GAC AAG CTC TAT CTG ATC CAG GGC ACC CAG GTC TAT ATC TTC CTG ACA AAG GCG GGC TAC ACC CTG GTA GAC AAT TAC CCA AAG CAG CTG GAG AAG GAG CTC GGG AGC CCT CAC GGC ATC AGC CTT GAC GCT GTG GAT GCG ACC TTT GTC TGT CCT GGG ACG TCT CGG CTC CAC GTC ATG GCA GGA CGG AAG CTG TGG TGG CTG GAC CTG AGT TTA GGC GCT CAA GGC CCG TGG ACA GAG CTT CCC TGG CCG CAT GAG AAG GTC GAT GCA GCC CTG TGC ACG GAA AAG TCT CTC GGC CCC AAC TCG TGT TCC GCC AGC GGC CTC CTG TAC ATC GTC CAC GGC CCC CAC GTC TAC TGC TAC AAA GAC GTG GAG AAA CTG GTC TCG GCC AAG GCG CTG CCC CAG CCC CAG AGC GTA AAC AGC CTG CTG GGC TGC CAT 
C_griseus                                  GTA ACC CTG GTG TTG CTG GGC CTG TGC TGG TCC CTG GCT GTT GCC AAC CCT CTT CCT TCT GCC CGT GGG AAT GTT GCT GAA GGT GAA ACC AAG TCA GAT GTA ATC GAG CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT GCC ACC CTG GAT CAC AAT GGG ACC ATG CTG TTC TTT AAA GGG GAG TTC GTG TGG AAG GGT TAC ACA TGG ATC AGA GAA ACA ATC TCA GAG AGA TGG AAG ACC AGC TCA GTG GAT GCT GCA TTC CGT GGT CCT GAC AGT GTT TTC CTG ATC AAG GGA GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAA AAC TAT CCA AAG TTG CTC CAA GAA GAA TTT CCT GGA ATC CCA TAC CCA CTG GAT GCG GCT GTG GAA TGC CAT TAT GGA GAA TGC CCG AGT GAA GGC ATA CTC TTC TTT CAA GGT AAC CGC AAG TGG TTC TGG GAC TTT GCT ACA AGA ACC ATA AAA GAA CGG TCC TGG CCA GCT GTT GGG AAT TGC ACC TCA GCC TTG AGG TGG CTT GAA CGC TAC TAT TGC TTC CAG GGT AAC CAG TTC CTG CGC TTC AAC CCA GTC ACA GGA GAG GTG CCT CCC AGA TAC CCT CTG GAT GCC CGT GAC TAC TTC ATG CCC TGC CCT GGC AGA GGC CAT GGT CAC AGA ACT GGT CAC AGG AAT AGC CGC TGT AGC CCA GAT CCT GGC TTG ACT GCA TTA ATG TCT GAC CAC CGT GGT ACC TAT GCC TTC ACT GGC TCC CAC TAC TGG CGT CTG GAC TCC AGC CGT GAT GGT TGG CAT AGC TGG CCC ATT GCT CAT CAC TGG CCC CAG GGG CCT GCA ACA GTA GAT GCT GCC TTT TCC TGG GAT GAT AAA GTC TAT CTC ATC CAG GGC ACT CAA GTG TAT GTC TTC CTG ACA AAG GGA GGC AAT ACC CTA GTA AAT GGT TAT CCA AAG CGG TTG GAG AAG GAA CTT GGG AGC CCT CCT GGG ATC AGC CTG GAG ACT GTG GAT TCA ACC TTT ACC TGC CCT GGT TCT TCC AGG CTC TAT GTT ACA GCA GGA CGG CGG CTA TGG TGG CTG GAC CTG AAG TTG GGT GTT CAG GCG ACA TGG ACA GAG CTT TCT TGG CCC CAT GAG AAA ATT GAC GGG GCT CTG TGT TTG GAA AAG TCC CTT GGT CCC AAC TCA TGT TCT TCC AGT GGT CCC TTG TAC CTT ATC CAC GGG CCC AAT TTG TAC TGC TAC AGC AGT ATA GAC AAA CTG AAT GCT GCC AAG ATT GTT TCT CAG CCC CAG AAA GTA AAC AGC CTC CTT GGG TGC AGT 
H_glaber                                   ATT GTA CTT GTG TGG CTG GGC CTG TGC TGG TCT CTA GCC ACT GCC AAC CCT CTT CCT AGT GCA CAT GGG AAC GTC ACT GAA GGT GAG ACC AAG CAA GAT GTG ACC GAA CAC TGC TCA GAT GGC TGG AGC TTT GAC GCC ACC ACC CTG GAT GAC CAT GGG GCC ATG CTG TTT TTT AAA GGG GAA TTC GTA TGG AAG AGT CAC AAA TGG ACC AAG GAG TTG ATC ACA GAG AGG TGG AGG ACC AGC TCC GTG GAT GCA GCA TTC CGC GGT CAC AAC AGT GTC TTG CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAG AAA TAT CCA ACA TTG CTC CAA GAC GAA TTT CCC GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGC CAG GAG GAA GGC ATT CTC TTC TTT CAA GGT AAC CGC AAG TGG TTC TGG GAC GTG GCT ACA GGA ACC AAA AAG GAG CGT ATC TGG CCA GCT GTT GGG AAC TGC ACC TCT GCC CTG CGG TGG CTT GGC CGA TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CAC TTC AAC CCT GTC ACG GGA GAG GTG CCT GCC ATA TAC CCT CTG GAT GCC CGT GAC TAC TTC ATG CCT TGC CCT GGA AGA GGC CAC GGG AAC AGA ACT GGC CAT GGG AAC AGC CGC TGT AGC CCA AGT CTA GTC TTG TCT GCA TTG GTA TCT GAC AAC CAC GGT ACC TAT GCC TTC AGT GGG TCC TAC TAC TGG CGT CTG GAT ACC AGC CGG GAT GGG TTT CAT AGC TGG CCC ATT GCT CAC CAG TGG ACC CAG GGC CCT TCA ATG GTG GAT GCT GCC TTT TCC TGG GAG GAT AAA CTC TAC CTG GTG CAG GGC ACC CAG GTA TAC ATC TTC CTG ACA AAG GGA GGC TAT CAT CTC GTA AGT GGT TAT CCT AAG CGG CTG GAG AAG GAA CTT GGG GGG CCT CAT GGG ATC AGC CTT ATG ACT GTG GAT GCA GCC TTT ACT TGT CCC GGA TCT TCC CAT CTC TAC ATC ATG GCA GGT CGG CGG CTG TGG TGG TTG GAC CTG AAG TTG GGT GCT CAA GCC ACG TGG ACA GAG CTT CCT TGG TCC CAT GAG AAC ATT GAT GGG GCC CTG TGT GTG GAA AAG TCC CTT GGC CCC ACC TCA TGT TCT GCC AGT GGT CCC GTG TAC CTT ATC CAC GGC CCC AAT GTG TAC TGC TAC AGT GAT GTG GAG AAG CTG AGT GCA GCC AAG ACC CTC CCG CAG CCC CAG AGG GTA GCC AGC CTC CTG GGC TGC AGC 
O_aires                                    GGT GCA CTG TGG CTG TTG GGC TTG TGC TGG TCT TTG GCC AAA GCC CAC CCT CTG GCT CCT GAG CAT GGG CAC GGA GTT GAA GGT GGG GCC GAG GCA GAT GTG ACA GAA CGC TGC TCG GAT GGC TGG GGC TTT GAT GCT ACC ACC CTG GAT GAG GAT GGA AAC ATG CTG TTT TTA AAA GGG GAG TTT GTG TGG AAG GGT CAT GCC TGG GCC CGG CAG TTA ATC TCA GAG AGG TGG AAG CCC AGT CCC GTG GAT GCT GCA TTC CGC GAT CGT AAC AGT GTC CTT CTG ATC AAG GGG GAC AAA TTC TGG GTA TAT CCT CCT GAG AAG CAA GAA TAT CCA AAG TTG CTC CAA AAG AAG TTT CCT GGA ATC CCA TTC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGC GGA GAA TGC TCT GAG GAG GGT GTC TTC TTC TTC CAA GGC AAC CAC ACG TGG TTC TGG GAC TTC TCT ACA AGT ACC ATA AAG GAA CGT TTC TGG CCG GCC GTT GGG AAC TGC TCC TCG GCC ATA CGA TGG CTC AAC CGC TAC TAC TGC TTC CGG GGT AAC AAA TTC CTG CGC TTC GAC CCC GTC GAG GGA AAA GTG AAT TCC AGT TAT CCT CGG GAT GTC CGA GAT TAC TTT ATG CCC TGC CCT AAC AGA GGC CAT GCA CAC AGG ACC CAG CAT GTG GAT AAG CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA TTG CTC TCT GAC AAC CAT GGT ACC TAT GCT TTC AGT GAG AAC CAC TAC TGG CGT CTG GAC AGC AGC CAG GAC GGA TGG CAC AGC TGG CTC ATC GAG CAT CTG TGG CCC CAA GGC CCC TCA ACA GTG GAT GCT GCC TTC CTC TGG GAT AAA AAG CTC TAT CTG ATC CAG GGT ACC CAG GTA TAT ATC TTC CTG ACA AGG GCA GGC TAC ACT CTC GTA AAA GAT TAT CCA AAG CAG CTG GAG AAG GAA TTC GGG AGC CCT CAA GGG GTC AGC CTT CAT TCC GTG GAT GCA GCC TTT ACC TGT CCT GGA TCT TCT CAG CTC CAC ATC GTG GCA GGC CAG AAG CTG TGG TGG CTG GAC CTG AAG TTA GGA GCT CAA GCC ACG TGG ACA GAG CTT CCT TGG CCC CAT ACG AAG GTC GAT GGG GCC CTG TGT ACA GAG AAG TCG CTG GGC CCC CAC TCG TGT TCC GCC AAT GGT CCG TTG TAC CTT GTC CAA GGC CCC AAT CTG TAC TGC TAC AAA GAC GTG GAG GAA CTG AGC AAG ACC AAG GAC CTT CCC CAG GCC CAG AGG ATG AAC AGC CTC CTG GGC TGC GCT 
M_fascicul                                 GTT GCA CTG GGG TTG TGG AGC CTG TGC TGG TCT CTG GCC ATT GCC AAC CCT CTT CCT AGT GCC CAT GGG AAT GTT GCT GAA GGT GAG ACC AAG CCA GAC GTG ACT GAA CGC TGC TCA GAT GGC TGG AGC TTT GAT GCT ACC ACC CTG GAT GAC AAT GGA ACT ATG CTG TTT TTT AAA GGG GAG TTT GTG TGG AAG AGT CAC AAA TGG GCC CGC GAG TTA ATC TCA GAG ACA TGG AAG ACC AGC CCT GTG GAT GCT GCA TTC CGT GGT CAC CAG AGT GTC TTT CTG ATC AAG GGG GAC AAA GTC TGG GTA TAC CCT CCT GAA AAG GAG AAA TAC CCA AAG TTG CTC CAA GAT AAA TTT CCT GGA ATC CCA TCC CCA CTG GAT GCA GCT GTG GAA TGT CAC CGT GGA GAA TGT CAA GCT GAA GGC ATC CTC TTC TTC CAA GGT GAC CAC AAG TGG TTC TGG GAC TTG GCT ACG GGA ACT ATG AAG AAG CGT TAC TGG TCA GCT GTT GGG AAC TGC TCC TCT GCC CTG AGA TGG CTG GGC CGC TAC TAC TGC TTC CAG GGT AAC CAA TTC CTG CGC TTC AAC CCT GTC ACG GGA GAG GTG CCT CCC AGG TAC CCG CTG GAT GTC CGA GAC TAC TTC ATG CCC TGC CCT GAC AGA GGC CAT GGA CAC AGG ACT GGC CAT GGG AAT GGT CGC TGT AGC CCA CAT CTA GTC TTG TCT GCA CTG ATG TCT GAC AAC CAT GGT ACC TAT GCC TTC AGT GGG ACC CAC TAC TGG CGT CTG GAC ACC AGC CGG GAT GGC TGG CAT AGC TGG CCC ATT GCT CAT CAG TGG CCC CAG GGT CCT TCA ACA GTG GAT GCT GCC TTT TCC TGG GAA GAA AAA CTC TAT CTG GTC CAG GGC ACT CAG GTA TAT GTC TTC CTG ACA AAG GGA GGC TAT ACC CTA GTA AGC GGT TAT CCA AAG CGG CTG GAG AAG GAA GTC GGG AGT CCT CAT GGG ATT ATC CTG GAC TCT GTG GAT GCG GCC TTT GTC TGC CCT GGG TCT TCT CGG CTC CAT ATC ATG GCA GGA CGG CGG CTG TGG TGG CTG GAC CTG AAG TCA GGA GCT CAA GCC ACA TGG ACA GAG CTT CCT TGG CCC CAT GAG AAG GTG GAC GGA GCC TTG TGT GTG GAA AAG TCC CTT GGC CCT AAC TCA TGT TCT GCC AAT GGT CCC TTG TAC CTC ATC CAT GGT CCC AAT TTG TAC TGC TAC AGT GAT GTG GAG AAA CTG AAT GCA GCC AAA TCC CCT CCG CAG CCC CAG AAA GTG ACC AGT CTC CTG GGC TGC ACT 


Model 0: one-ratio


TREE #  1:  ((((4, ((((7, (8, 15)), 14), 12), (10, 22))), 13), ((5, 20), ((11, 16), 19))), 17, ((((2, 21), 18), 6, (1, 3)), 9));   MP score: 1457
lnL(ntime: 40  np: 42):  -9486.900013      +0.000000
  23..24   24..25   25..26   26..4    26..27   27..28   28..29   29..30   30..7    30..31   31..8    31..15   29..14   28..12   27..32   32..10   32..22   25..13   24..33   33..34   34..5    34..20   33..35   35..36   36..11   36..16   35..19   23..17   23..37   37..38   38..39   39..40   40..2    40..21   39..18   38..6    38..41   41..1    41..3    37..9  
 0.064375 0.021213 0.095164 0.089129 0.039986 0.026609 0.002618 0.015536 0.004689 0.002355 0.004692 0.004687 0.015104 0.043589 0.047453 0.004645 0.004774 0.262152 0.035670 0.130138 0.281843 0.137350 0.236933 0.131645 0.088208 0.085586 0.140390 0.415995 0.027114 0.022229 0.139890 0.291656 0.061259 0.074866 0.350113 0.231817 0.134004 0.073548 0.139756 0.317128 3.359155 0.386746
SEs for parameters:
 0.017049 0.010127 0.018132 0.016938 0.012448 0.009757 0.003488 0.006702 0.003549 0.002516 0.003622 0.003365 0.006535 0.011451 0.012160 0.003583 0.003573 0.029168 0.014667 0.023922 0.030811 0.021372 0.028708 0.021690 0.015967 0.017316 0.021493 0.037370 0.011362 0.010598 0.025333 0.033604 0.015748 0.015997 0.036704 0.026913 0.021391 0.015900 0.019578 0.031074 0.172461 0.017101

Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   4.29591

((((4: 0.089129, ((((7: 0.004689, (8: 0.004692, 15: 0.004687): 0.002355): 0.015536, 14: 0.015104): 0.002618, 12: 0.043589): 0.026609, (10: 0.004645, 22: 0.004774): 0.047453): 0.039986): 0.095164, 13: 0.262152): 0.021213, ((5: 0.281843, 20: 0.137350): 0.130138, ((11: 0.088208, 16: 0.085586): 0.131645, 19: 0.140390): 0.236933): 0.035670): 0.064375, 17: 0.415995, ((((2: 0.061259, 21: 0.074866): 0.291656, 18: 0.350113): 0.139890, 6: 0.231817, (1: 0.073548, 3: 0.139756): 0.134004): 0.022229, 9: 0.317128): 0.027114);

((((C_jacchus: 0.089129, ((((G_gorilla: 0.004689, (H_sapiens: 0.004692, P_troglody: 0.004687): 0.002355): 0.015536, P_abelii: 0.015104): 0.002618, N_leucogen: 0.043589): 0.026609, (M_mulatta: 0.004645, M_fascicul: 0.004774): 0.047453): 0.039986): 0.095164, O_cuniculu: 0.262152): 0.021213, ((C_porcellu: 0.281843, H_glaber: 0.137350): 0.130138, ((M_musculus: 0.088208, R_norvegic: 0.085586): 0.131645, C_griseus: 0.140390): 0.236933): 0.035670): 0.064375, S_araneus: 0.415995, ((((B_taurus: 0.061259, O_aires: 0.074866): 0.291656, S_scrofa: 0.350113): 0.139890, E_caballus: 0.231817, (A_melanole: 0.073548, C_familiar: 0.139756): 0.134004): 0.022229, M_lucifugu: 0.317128): 0.027114);

Detailed output identifying parameters

kappa (ts/tv) =  3.35916

omega (dN/dS) =  0.38675

dN & dS for each branch

 branch          t       N       S   dN/dS      dN      dS  N*dN  S*dS

  23..24     0.064   936.2   359.8  0.3867  0.0149  0.0385  13.9  13.9
  24..25     0.021   936.2   359.8  0.3867  0.0049  0.0127   4.6   4.6
  25..26     0.095   936.2   359.8  0.3867  0.0220  0.0569  20.6  20.5
  26..4      0.089   936.2   359.8  0.3867  0.0206  0.0533  19.3  19.2
  26..27     0.040   936.2   359.8  0.3867  0.0093  0.0239   8.7   8.6
  27..28     0.027   936.2   359.8  0.3867  0.0062  0.0159   5.8   5.7
  28..29     0.003   936.2   359.8  0.3867  0.0006  0.0016   0.6   0.6
  29..30     0.016   936.2   359.8  0.3867  0.0036  0.0093   3.4   3.3
  30..7      0.005   936.2   359.8  0.3867  0.0011  0.0028   1.0   1.0
  30..31     0.002   936.2   359.8  0.3867  0.0005  0.0014   0.5   0.5
  31..8      0.005   936.2   359.8  0.3867  0.0011  0.0028   1.0   1.0
  31..15     0.005   936.2   359.8  0.3867  0.0011  0.0028   1.0   1.0
  29..14     0.015   936.2   359.8  0.3867  0.0035  0.0090   3.3   3.3
  28..12     0.044   936.2   359.8  0.3867  0.0101  0.0261   9.4   9.4
  27..32     0.047   936.2   359.8  0.3867  0.0110  0.0284  10.3  10.2
  32..10     0.005   936.2   359.8  0.3867  0.0011  0.0028   1.0   1.0
  32..22     0.005   936.2   359.8  0.3867  0.0011  0.0029   1.0   1.0
  25..13     0.262   936.2   359.8  0.3867  0.0607  0.1569  56.8  56.4
  24..33     0.036   936.2   359.8  0.3867  0.0083  0.0213   7.7   7.7
  33..34     0.130   936.2   359.8  0.3867  0.0301  0.0779  28.2  28.0
  34..5      0.282   936.2   359.8  0.3867  0.0652  0.1687  61.1  60.7
  34..20     0.137   936.2   359.8  0.3867  0.0318  0.0822  29.8  29.6
  33..35     0.237   936.2   359.8  0.3867  0.0548  0.1418  51.3  51.0
  35..36     0.132   936.2   359.8  0.3867  0.0305  0.0788  28.5  28.3
  36..11     0.088   936.2   359.8  0.3867  0.0204  0.0528  19.1  19.0
  36..16     0.086   936.2   359.8  0.3867  0.0198  0.0512  18.5  18.4
  35..19     0.140   936.2   359.8  0.3867  0.0325  0.0840  30.4  30.2
  23..17     0.416   936.2   359.8  0.3867  0.0963  0.2489  90.1  89.6
  23..37     0.027   936.2   359.8  0.3867  0.0063  0.0162   5.9   5.8
  37..38     0.022   936.2   359.8  0.3867  0.0051  0.0133   4.8   4.8
  38..39     0.140   936.2   359.8  0.3867  0.0324  0.0837  30.3  30.1
  39..40     0.292   936.2   359.8  0.3867  0.0675  0.1745  63.2  62.8
  40..2      0.061   936.2   359.8  0.3867  0.0142  0.0367  13.3  13.2
  40..21     0.075   936.2   359.8  0.3867  0.0173  0.0448  16.2  16.1
  39..18     0.350   936.2   359.8  0.3867  0.0810  0.2095  75.9  75.4
  38..6      0.232   936.2   359.8  0.3867  0.0537  0.1387  50.2  49.9
  38..41     0.134   936.2   359.8  0.3867  0.0310  0.0802  29.0  28.9
  41..1      0.074   936.2   359.8  0.3867  0.0170  0.0440  15.9  15.8
  41..3      0.140   936.2   359.8  0.3867  0.0323  0.0836  30.3  30.1
  37..9      0.317   936.2   359.8  0.3867  0.0734  0.1898  68.7  68.3

tree length for dN:       0.9943
tree length for dS:       2.5708


Time used: 13:39


Model 1: NearlyNeutral (2 categories)


TREE #  1:  ((((4, ((((7, (8, 15)), 14), 12), (10, 22))), 13), ((5, 20), ((11, 16), 19))), 17, ((((2, 21), 18), 6, (1, 3)), 9));   MP score: 1457
lnL(ntime: 40  np: 43):  -9297.115303      +0.000000
  23..24   24..25   25..26   26..4    26..27   27..28   28..29   29..30   30..7    30..31   31..8    31..15   29..14   28..12   27..32   32..10   32..22   25..13   24..33   33..34   34..5    34..20   33..35   35..36   36..11   36..16   35..19   23..17   23..37   37..38   38..39   39..40   40..2    40..21   39..18   38..6    38..41   41..1    41..3    37..9  
 0.063539 0.016297 0.098921 0.090644 0.039724 0.026612 0.001602 0.015672 0.004688 0.002355 0.004697 0.004690 0.015109 0.044754 0.049177 0.004668 0.004781 0.273127 0.036175 0.134133 0.292124 0.140955 0.246727 0.134680 0.089882 0.086650 0.144136 0.443064 0.026896 0.018645 0.145789 0.302953 0.062401 0.075291 0.374943 0.239654 0.137933 0.074435 0.143366 0.334724 3.419196 0.678452 0.139114
SEs for parameters:
 0.017647 0.009575 0.019365 0.017472 0.012621 0.009855 0.003440 0.006758 0.003546 0.002514 0.003650 0.003373 0.006631 0.011857 0.012514 0.003601 0.003589 0.031972 0.015312 0.025080 0.033224 0.022469 0.031143 0.022812 0.016481 0.017886 0.022953 0.041316 0.012384 0.010817 0.027194 0.036027 0.016468 0.016457 0.041889 0.028082 0.022208 0.016356 0.020462 0.033633 0.170157 0.033166 0.011181

Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   4.44661

((((4: 0.090644, ((((7: 0.004688, (8: 0.004697, 15: 0.004690): 0.002355): 0.015672, 14: 0.015109): 0.001602, 12: 0.044754): 0.026612, (10: 0.004668, 22: 0.004781): 0.049177): 0.039724): 0.098921, 13: 0.273127): 0.016297, ((5: 0.292124, 20: 0.140955): 0.134133, ((11: 0.089882, 16: 0.086650): 0.134680, 19: 0.144136): 0.246727): 0.036175): 0.063539, 17: 0.443064, ((((2: 0.062401, 21: 0.075291): 0.302953, 18: 0.374943): 0.145789, 6: 0.239654, (1: 0.074435, 3: 0.143366): 0.137933): 0.018645, 9: 0.334724): 0.026896);

((((C_jacchus: 0.090644, ((((G_gorilla: 0.004688, (H_sapiens: 0.004697, P_troglody: 0.004690): 0.002355): 0.015672, P_abelii: 0.015109): 0.001602, N_leucogen: 0.044754): 0.026612, (M_mulatta: 0.004668, M_fascicul: 0.004781): 0.049177): 0.039724): 0.098921, O_cuniculu: 0.273127): 0.016297, ((C_porcellu: 0.292124, H_glaber: 0.140955): 0.134133, ((M_musculus: 0.089882, R_norvegic: 0.086650): 0.134680, C_griseus: 0.144136): 0.246727): 0.036175): 0.063539, S_araneus: 0.443064, ((((B_taurus: 0.062401, O_aires: 0.075291): 0.302953, S_scrofa: 0.374943): 0.145789, E_caballus: 0.239654, (A_melanole: 0.074435, C_familiar: 0.143366): 0.137933): 0.018645, M_lucifugu: 0.334724): 0.026896);

Detailed output identifying parameters

kappa (ts/tv) =  3.41920


dN/dS (w) for site classes (K=2)

p:   0.67845  0.32155
w:   0.13912  1.00000

dN & dS for each branch

 branch          t       N       S   dN/dS      dN      dS  N*dN  S*dS

  23..24      0.064    935.4    360.6   0.4159   0.0152   0.0366   14.2   13.2
  24..25      0.016    935.4    360.6   0.4159   0.0039   0.0094    3.7    3.4
  25..26      0.099    935.4    360.6   0.4159   0.0237   0.0570   22.2   20.6
  26..4       0.091    935.4    360.6   0.4159   0.0217   0.0522   20.3   18.8
  26..27      0.040    935.4    360.6   0.4159   0.0095   0.0229    8.9    8.3
  27..28      0.027    935.4    360.6   0.4159   0.0064   0.0153    6.0    5.5
  28..29      0.002    935.4    360.6   0.4159   0.0004   0.0009    0.4    0.3
  29..30      0.016    935.4    360.6   0.4159   0.0038   0.0090    3.5    3.3
  30..7       0.005    935.4    360.6   0.4159   0.0011   0.0027    1.1    1.0
  30..31      0.002    935.4    360.6   0.4159   0.0006   0.0014    0.5    0.5
  31..8       0.005    935.4    360.6   0.4159   0.0011   0.0027    1.1    1.0
  31..15      0.005    935.4    360.6   0.4159   0.0011   0.0027    1.1    1.0
  29..14      0.015    935.4    360.6   0.4159   0.0036   0.0087    3.4    3.1
  28..12      0.045    935.4    360.6   0.4159   0.0107   0.0258   10.0    9.3
  27..32      0.049    935.4    360.6   0.4159   0.0118   0.0283   11.0   10.2
  32..10      0.005    935.4    360.6   0.4159   0.0011   0.0027    1.0    1.0
  32..22      0.005    935.4    360.6   0.4159   0.0011   0.0028    1.1    1.0
  25..13      0.273    935.4    360.6   0.4159   0.0655   0.1574   61.2   56.8
  24..33      0.036    935.4    360.6   0.4159   0.0087   0.0208    8.1    7.5
  33..34      0.134    935.4    360.6   0.4159   0.0321   0.0773   30.1   27.9
  34..5       0.292    935.4    360.6   0.4159   0.0700   0.1683   65.5   60.7
  34..20      0.141    935.4    360.6   0.4159   0.0338   0.0812   31.6   29.3
  33..35      0.247    935.4    360.6   0.4159   0.0591   0.1422   55.3   51.3
  35..36      0.135    935.4    360.6   0.4159   0.0323   0.0776   30.2   28.0
  36..11      0.090    935.4    360.6   0.4159   0.0215   0.0518   20.2   18.7
  36..16      0.087    935.4    360.6   0.4159   0.0208   0.0499   19.4   18.0
  35..19      0.144    935.4    360.6   0.4159   0.0345   0.0831   32.3   30.0
  23..17      0.443    935.4    360.6   0.4159   0.1062   0.2553   99.3   92.1
  23..37      0.027    935.4    360.6   0.4159   0.0064   0.0155    6.0    5.6
  37..38      0.019    935.4    360.6   0.4159   0.0045   0.0107    4.2    3.9
  38..39      0.146    935.4    360.6   0.4159   0.0349   0.0840   32.7   30.3
  39..40      0.303    935.4    360.6   0.4159   0.0726   0.1746   67.9   63.0
  40..2       0.062    935.4    360.6   0.4159   0.0150   0.0360   14.0   13.0
  40..21      0.075    935.4    360.6   0.4159   0.0180   0.0434   16.9   15.6
  39..18      0.375    935.4    360.6   0.4159   0.0899   0.2161   84.1   77.9
  38..6       0.240    935.4    360.6   0.4159   0.0574   0.1381   53.7   49.8
  38..41      0.138    935.4    360.6   0.4159   0.0331   0.0795   30.9   28.7
  41..1       0.074    935.4    360.6   0.4159   0.0178   0.0429   16.7   15.5
  41..3       0.143    935.4    360.6   0.4159   0.0344   0.0826   32.1   29.8
  37..9       0.335    935.4    360.6   0.4159   0.0802   0.1929   75.0   69.6


Time used: 29:25


Model 2: PositiveSelection (3 categories)


TREE #  1:  ((((4, ((((7, (8, 15)), 14), 12), (10, 22))), 13), ((5, 20), ((11, 16), 19))), 17, ((((2, 21), 18), 6, (1, 3)), 9));   MP score: 1457
lnL(ntime: 40  np: 45):  -9292.594997      +0.000000
  23..24   24..25   25..26   26..4    26..27   27..28   28..29   29..30   30..7    30..31   31..8    31..15   29..14   28..12   27..32   32..10   32..22   25..13   24..33   33..34   34..5    34..20   33..35   35..36   36..11   36..16   35..19   23..17   23..37   37..38   38..39   39..40   40..2    40..21   39..18   38..6    38..41   41..1    41..3    37..9  
 0.061975 0.014832 0.099882 0.091559 0.039181 0.026764 0.000576 0.015772 0.004669 0.002365 0.004692 0.004684 0.015056 0.045824 0.050345 0.004670 0.004774 0.276150 0.036107 0.135397 0.294442 0.141598 0.249442 0.136066 0.090418 0.086904 0.144565 0.449060 0.027043 0.018768 0.148293 0.304740 0.062468 0.075514 0.381026 0.243225 0.136356 0.074378 0.144517 0.339615 3.497895 0.673747 0.301734 0.143578 2.369632
SEs for parameters:
 0.017571 0.009315 0.019655 0.017758 0.012590 0.009970 0.003620 0.006855 0.003572 0.002525 0.003665 0.003373 0.006929 0.012267 0.012878 0.003605 0.003595 0.033011 0.015307 0.025566 0.034865 0.022811 0.032317 0.023085 0.016885 0.018140 0.023686 0.043547 0.012439 0.011033 0.027827 0.037452 0.016612 0.016532 0.043585 0.029742 0.022590 0.016588 0.021381 0.035061 0.183632 0.033347 0.040117 0.012386 0.780410

Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   4.48372

((((4: 0.091559, ((((7: 0.004669, (8: 0.004692, 15: 0.004684): 0.002365): 0.015772, 14: 0.015056): 0.000576, 12: 0.045824): 0.026764, (10: 0.004670, 22: 0.004774): 0.050345): 0.039181): 0.099882, 13: 0.276150): 0.014832, ((5: 0.294442, 20: 0.141598): 0.135397, ((11: 0.090418, 16: 0.086904): 0.136066, 19: 0.144565): 0.249442): 0.036107): 0.061975, 17: 0.449060, ((((2: 0.062468, 21: 0.075514): 0.304740, 18: 0.381026): 0.148293, 6: 0.243225, (1: 0.074378, 3: 0.144517): 0.136356): 0.018768, 9: 0.339615): 0.027043);

((((C_jacchus: 0.091559, ((((G_gorilla: 0.004669, (H_sapiens: 0.004692, P_troglody: 0.004684): 0.002365): 0.015772, P_abelii: 0.015056): 0.000576, N_leucogen: 0.045824): 0.026764, (M_mulatta: 0.004670, M_fascicul: 0.004774): 0.050345): 0.039181): 0.099882, O_cuniculu: 0.276150): 0.014832, ((C_porcellu: 0.294442, H_glaber: 0.141598): 0.135397, ((M_musculus: 0.090418, R_norvegic: 0.086904): 0.136066, C_griseus: 0.144565): 0.249442): 0.036107): 0.061975, S_araneus: 0.449060, ((((B_taurus: 0.062468, O_aires: 0.075514): 0.304740, S_scrofa: 0.381026): 0.148293, E_caballus: 0.243225, (A_melanole: 0.074378, C_familiar: 0.144517): 0.136356): 0.018768, M_lucifugu: 0.339615): 0.027043);

Detailed output identifying parameters

kappa (ts/tv) =  3.49790


dN/dS (w) for site classes (K=3)

p:   0.67375  0.30173  0.02452
w:   0.14358  1.00000  2.36964

dN & dS for each branch

 branch          t       N       S   dN/dS      dN      dS  N*dN  S*dS

  23..24      0.062    934.4    361.6   0.4566   0.0155   0.0340   14.5   12.3
  24..25      0.015    934.4    361.6   0.4566   0.0037   0.0081    3.5    2.9
  25..26      0.100    934.4    361.6   0.4566   0.0250   0.0547   23.4   19.8
  26..4       0.092    934.4    361.6   0.4566   0.0229   0.0502   21.4   18.1
  26..27      0.039    934.4    361.6   0.4566   0.0098   0.0215    9.2    7.8
  27..28      0.027    934.4    361.6   0.4566   0.0067   0.0147    6.3    5.3
  28..29      0.001    934.4    361.6   0.4566   0.0001   0.0003    0.1    0.1
  29..30      0.016    934.4    361.6   0.4566   0.0039   0.0086    3.7    3.1
  30..7       0.005    934.4    361.6   0.4566   0.0012   0.0026    1.1    0.9
  30..31      0.002    934.4    361.6   0.4566   0.0006   0.0013    0.6    0.5
  31..8       0.005    934.4    361.6   0.4566   0.0012   0.0026    1.1    0.9
  31..15      0.005    934.4    361.6   0.4566   0.0012   0.0026    1.1    0.9
  29..14      0.015    934.4    361.6   0.4566   0.0038   0.0083    3.5    3.0
  28..12      0.046    934.4    361.6   0.4566   0.0115   0.0251   10.7    9.1
  27..32      0.050    934.4    361.6   0.4566   0.0126   0.0276   11.8   10.0
  32..10      0.005    934.4    361.6   0.4566   0.0012   0.0026    1.1    0.9
  32..22      0.005    934.4    361.6   0.4566   0.0012   0.0026    1.1    0.9
  25..13      0.276    934.4    361.6   0.4566   0.0691   0.1513   64.6   54.7
  24..33      0.036    934.4    361.6   0.4566   0.0090   0.0198    8.4    7.2
  33..34      0.135    934.4    361.6   0.4566   0.0339   0.0742   31.7   26.8
  34..5       0.294    934.4    361.6   0.4566   0.0737   0.1614   68.8   58.4
  34..20      0.142    934.4    361.6   0.4566   0.0354   0.0776   33.1   28.1
  33..35      0.249    934.4    361.6   0.4566   0.0624   0.1367   58.3   49.4
  35..36      0.136    934.4    361.6   0.4566   0.0340   0.0746   31.8   27.0
  36..11      0.090    934.4    361.6   0.4566   0.0226   0.0496   21.1   17.9
  36..16      0.087    934.4    361.6   0.4566   0.0217   0.0476   20.3   17.2
  35..19      0.145    934.4    361.6   0.4566   0.0362   0.0792   33.8   28.7
  23..17      0.449    934.4    361.6   0.4566   0.1124   0.2461  105.0   89.0
  23..37      0.027    934.4    361.6   0.4566   0.0068   0.0148    6.3    5.4
  37..38      0.019    934.4    361.6   0.4566   0.0047   0.0103    4.4    3.7
  38..39      0.148    934.4    361.6   0.4566   0.0371   0.0813   34.7   29.4
  39..40      0.305    934.4    361.6   0.4566   0.0763   0.1670   71.3   60.4
  40..2       0.062    934.4    361.6   0.4566   0.0156   0.0342   14.6   12.4
  40..21      0.076    934.4    361.6   0.4566   0.0189   0.0414   17.7   15.0
  39..18      0.381    934.4    361.6   0.4566   0.0953   0.2088   89.1   75.5
  38..6       0.243    934.4    361.6   0.4566   0.0609   0.1333   56.9   48.2
  38..41      0.136    934.4    361.6   0.4566   0.0341   0.0747   31.9   27.0
  41..1       0.074    934.4    361.6   0.4566   0.0186   0.0408   17.4   14.7
  41..3       0.145    934.4    361.6   0.4566   0.0362   0.0792   33.8   28.6
  37..9       0.340    934.4    361.6   0.4566   0.0850   0.1861   79.4   67.3


Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: A_melanole)

            Pr(w>1)     post mean +- SE for w

     1 I      0.968*        2.326
    68 R      0.694         1.950
    70 V      0.778         2.066
   158 G      0.683         1.936
   160 K      0.704         1.965
   330 D      0.570         1.780
   337 T      0.605         1.829
   418 T      0.617         1.845


Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: A_melanole)

            Pr(w>1)     post mean +- SE for w

     1 I      0.933         2.142 +- 0.568
    68 R      0.721         1.890 +- 0.693
    70 V      0.789         1.967 +- 0.664
   158 G      0.709         1.879 +- 0.697
   160 K      0.726         1.899 +- 0.691
   164 S      0.503         1.585 +- 0.680
   330 D      0.625         1.752 +- 0.701
   337 T      0.652         1.790 +- 0.700
   418 T      0.660         1.806 +- 0.703



The grid (see ternary graph for p0-p1)

w0:   0.050  0.150  0.250  0.350  0.450  0.550  0.650  0.750  0.850  0.950
w2:   1.500  2.500  3.500  4.500  5.500  6.500  7.500  8.500  9.500 10.500


Posterior on the grid

w0:   0.000  1.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000
w2:   0.333  0.646  0.020  0.000  0.000  0.000  0.000  0.000  0.000  0.000

Posterior for p0-p1 (see the ternary graph)

 0.000
 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.526
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.005 0.272 0.187
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.002 0.005 0.003 0.000
 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000

sum of density on p0-p1 =   1.000000

Time used: 1:00:07


Model 3: discrete (3 categories)


TREE #  1:  ((((4, ((((7, (8, 15)), 14), 12), (10, 22))), 13), ((5, 20), ((11, 16), 19))), 17, ((((2, 21), 18), 6, (1, 3)), 9));   MP score: 1457
lnL(ntime: 40  np: 46):  -9272.044665      +0.000000
  23..24   24..25   25..26   26..4    26..27   27..28   28..29   29..30   30..7    30..31   31..8    31..15   29..14   28..12   27..32   32..10   32..22   25..13   24..33   33..34   34..5    34..20   33..35   35..36   36..11   36..16   35..19   23..17   23..37   37..38   38..39   39..40   40..2    40..21   39..18   38..6    38..41   41..1    41..3    37..9  
 0.062692 0.015200 0.099975 0.091435 0.039447 0.026799 0.000950 0.015743 0.004691 0.002364 0.004706 0.004698 0.015146 0.045512 0.050015 0.004672 0.004797 0.276271 0.036867 0.134852 0.295425 0.141114 0.249159 0.136216 0.090581 0.086982 0.144682 0.448938 0.026167 0.018611 0.145510 0.306275 0.062133 0.075770 0.383216 0.241487 0.138476 0.074683 0.143977 0.339758 3.435957 0.293238 0.526138 0.000001 0.353365 1.348964
SEs for parameters:
 0.017872 0.009511 0.019687 0.017717 0.012722 0.009990 0.003569 0.006813 0.003567 0.002534 0.003685 0.003380 0.006667 0.012171 0.012675 0.003625 0.003609 0.032753 0.015393 0.025559 0.034366 0.022945 0.031956 0.023135 0.016951 0.018264 0.023417 0.043195 0.012648 0.011017 0.027916 0.037190 0.016483 0.016657 0.044008 0.029617 0.022762 0.016846 0.020654 0.034552 0.182523 0.069324 0.058256 0.022936 0.058755 0.137896

Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   4.48599

((((4: 0.091435, ((((7: 0.004691, (8: 0.004706, 15: 0.004698): 0.002364): 0.015743, 14: 0.015146): 0.000950, 12: 0.045512): 0.026799, (10: 0.004672, 22: 0.004797): 0.050015): 0.039447): 0.099975, 13: 0.276271): 0.015200, ((5: 0.295425, 20: 0.141114): 0.134852, ((11: 0.090581, 16: 0.086982): 0.136216, 19: 0.144682): 0.249159): 0.036867): 0.062692, 17: 0.448938, ((((2: 0.062133, 21: 0.075770): 0.306275, 18: 0.383216): 0.145510, 6: 0.241487, (1: 0.074683, 3: 0.143977): 0.138476): 0.018611, 9: 0.339758): 0.026167);

((((C_jacchus: 0.091435, ((((G_gorilla: 0.004691, (H_sapiens: 0.004706, P_troglody: 0.004698): 0.002364): 0.015743, P_abelii: 0.015146): 0.000950, N_leucogen: 0.045512): 0.026799, (M_mulatta: 0.004672, M_fascicul: 0.004797): 0.050015): 0.039447): 0.099975, O_cuniculu: 0.276271): 0.015200, ((C_porcellu: 0.295425, H_glaber: 0.141114): 0.134852, ((M_musculus: 0.090581, R_norvegic: 0.086982): 0.136216, C_griseus: 0.144682): 0.249159): 0.036867): 0.062692, S_araneus: 0.448938, ((((B_taurus: 0.062133, O_aires: 0.075770): 0.306275, S_scrofa: 0.383216): 0.145510, E_caballus: 0.241487, (A_melanole: 0.074683, C_familiar: 0.143977): 0.138476): 0.018611, M_lucifugu: 0.339758): 0.026167);

Detailed output identifying parameters

kappa (ts/tv) =  3.43596


dN/dS (w) for site classes (K=3)

p:   0.29324  0.52614  0.18062
w:   0.00000  0.35336  1.34897

dN & dS for each branch

 branch          t       N       S   dN/dS      dN      dS  N*dN  S*dS

  23..24      0.063    935.2    360.8   0.4296   0.0153   0.0355   14.3   12.8
  24..25      0.015    935.2    360.8   0.4296   0.0037   0.0086    3.5    3.1
  25..26      0.100    935.2    360.8   0.4296   0.0243   0.0566   22.8   20.4
  26..4       0.091    935.2    360.8   0.4296   0.0223   0.0518   20.8   18.7
  26..27      0.039    935.2    360.8   0.4296   0.0096   0.0223    9.0    8.1
  27..28      0.027    935.2    360.8   0.4296   0.0065   0.0152    6.1    5.5
  28..29      0.001    935.2    360.8   0.4296   0.0002   0.0005    0.2    0.2
  29..30      0.016    935.2    360.8   0.4296   0.0038   0.0089    3.6    3.2
  30..7       0.005    935.2    360.8   0.4296   0.0011   0.0027    1.1    1.0
  30..31      0.002    935.2    360.8   0.4296   0.0006   0.0013    0.5    0.5
  31..8       0.005    935.2    360.8   0.4296   0.0011   0.0027    1.1    1.0
  31..15      0.005    935.2    360.8   0.4296   0.0011   0.0027    1.1    1.0
  29..14      0.015    935.2    360.8   0.4296   0.0037   0.0086    3.4    3.1
  28..12      0.046    935.2    360.8   0.4296   0.0111   0.0258   10.4    9.3
  27..32      0.050    935.2    360.8   0.4296   0.0122   0.0283   11.4   10.2
  32..10      0.005    935.2    360.8   0.4296   0.0011   0.0026    1.1    1.0
  32..22      0.005    935.2    360.8   0.4296   0.0012   0.0027    1.1    1.0
  25..13      0.276    935.2    360.8   0.4296   0.0672   0.1565   62.9   56.5
  24..33      0.037    935.2    360.8   0.4296   0.0090   0.0209    8.4    7.5
  33..34      0.135    935.2    360.8   0.4296   0.0328   0.0764   30.7   27.6
  34..5       0.295    935.2    360.8   0.4296   0.0719   0.1674   67.2   60.4
  34..20      0.141    935.2    360.8   0.4296   0.0343   0.0799   32.1   28.8
  33..35      0.249    935.2    360.8   0.4296   0.0606   0.1412   56.7   50.9
  35..36      0.136    935.2    360.8   0.4296   0.0331   0.0772   31.0   27.8
  36..11      0.091    935.2    360.8   0.4296   0.0220   0.0513   20.6   18.5
  36..16      0.087    935.2    360.8   0.4296   0.0212   0.0493   19.8   17.8
  35..19      0.145    935.2    360.8   0.4296   0.0352   0.0820   32.9   29.6
  23..17      0.449    935.2    360.8   0.4296   0.1093   0.2543  102.2   91.8
  23..37      0.026    935.2    360.8   0.4296   0.0064   0.0148    6.0    5.3
  37..38      0.019    935.2    360.8   0.4296   0.0045   0.0105    4.2    3.8
  38..39      0.146    935.2    360.8   0.4296   0.0354   0.0824   33.1   29.7
  39..40      0.306    935.2    360.8   0.4296   0.0745   0.1735   69.7   62.6
  40..2       0.062    935.2    360.8   0.4296   0.0151   0.0352   14.1   12.7
  40..21      0.076    935.2    360.8   0.4296   0.0184   0.0429   17.2   15.5
  39..18      0.383    935.2    360.8   0.4296   0.0933   0.2171   87.2   78.3
  38..6       0.241    935.2    360.8   0.4296   0.0588   0.1368   55.0   49.4
  38..41      0.138    935.2    360.8   0.4296   0.0337   0.0784   31.5   28.3
  41..1       0.075    935.2    360.8   0.4296   0.0182   0.0423   17.0   15.3
  41..3       0.144    935.2    360.8   0.4296   0.0350   0.0816   32.8   29.4
  37..9       0.340    935.2    360.8   0.4296   0.0827   0.1925   77.3   69.5


Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: A_melanole)

            Pr(w>1)     post mean +- SE for w

     1 I      1.000**       1.349
    14 I      0.968*        1.317
    16 H      0.627         0.978
    19 P      0.826         1.176
    20 G      0.987*        1.336
    21 T      0.928         1.277
    22 P      0.976*        1.325
    24 K      0.946         1.296
    25 E      0.611         0.962
    26 T      0.777         1.127
    30 T      0.791         1.141
    32 P      0.960*        1.309
    35 T      0.989*        1.338
    37 L      0.970*        1.319
    52 H      0.558         0.908
    54 A      0.625         0.976
    65 K      0.560         0.910
    68 R      1.000**       1.349
    70 V      1.000**       1.349
    80 T      0.960*        1.309
    82 S      0.632         0.982
    91 N      0.993**       1.342
   110 K      0.789         1.139
   138 Q      0.839         1.188
   139 D      0.982*        1.331
   142 V      0.823         1.173
   149 Q      0.574         0.925
   155 L      0.974*        1.323
   156 A      0.979*        1.328
   158 G      0.999**       1.348
   160 K      0.999**       1.348
   164 S      0.999**       1.348
   175 M      0.621         0.972
   179 S      0.673         1.023
   188 Q      0.670         1.021
   196 T      0.804         1.154
   200 L      0.850         1.200
   202 K      0.980*        1.329
   212 I      0.575         0.926
   220 G      0.703         1.053
   224 G      0.961*        1.310
   226 G      0.883         1.232
   228 G      0.990*        1.339
   233 Y      0.950         1.299
   240 L      0.997**       1.346
   252 S      0.993**       1.342
   261 R      0.882         1.231
   270 V      0.737         1.087
   279 T      0.785         1.135
   288 N      0.518         0.869
   311 D      0.956*        1.305
   321 F      0.828         1.178
   325 H      0.992**       1.341
   330 D      1.000**       1.349
   331 A      0.992**       1.341
   337 T      0.999**       1.348
   343 R      0.797         1.147
   347 M      0.917         1.266
   351 K      0.922         1.271
   359 L      0.767         1.117
   364 T      0.822         1.172
   381 M      0.970*        1.319
   388 T      0.645         0.996
   393 N      0.929         1.278
   395 P      0.607         0.958
   414 S      0.871         1.221
   415 T      0.761         1.111
   418 T      0.999**       1.348
   424 R      0.835         1.185
   426 E      0.984*        1.333
   432 N      0.980*        1.329


Time used: 1:19:29


Model 7: beta (10 categories)


TREE #  1:  ((((4, ((((7, (8, 15)), 14), 12), (10, 22))), 13), ((5, 20), ((11, 16), 19))), 17, ((((2, 21), 18), 6, (1, 3)), 9));   MP score: 1457
lnL(ntime: 40  np: 43):  -9287.848602      +0.000000
  23..24   24..25   25..26   26..4    26..27   27..28   28..29   29..30   30..7    30..31   31..8    31..15   29..14   28..12   27..32   32..10   32..22   25..13   24..33   33..34   34..5    34..20   33..35   35..36   36..11   36..16   35..19   23..17   23..37   37..38   38..39   39..40   40..2    40..21   39..18   38..6    38..41   41..1    41..3    37..9  
 0.064017 0.017336 0.098772 0.091211 0.039802 0.026817 0.001759 0.015737 0.004711 0.002370 0.004721 0.004714 0.015198 0.044863 0.049178 0.004691 0.004802 0.273944 0.035576 0.135638 0.294028 0.140965 0.248339 0.135755 0.090230 0.087077 0.144292 0.443009 0.026353 0.019859 0.144525 0.305299 0.062143 0.076147 0.376348 0.240106 0.137663 0.074623 0.143650 0.334886 3.349773 0.350171 0.558912
SEs for parameters:
 0.017746 0.009801 0.019314 0.017503 0.012608 0.009904 0.003493 0.006789 0.003559 0.002536 0.003662 0.003387 0.006646 0.011876 0.012525 0.003618 0.003607 0.031689 0.015335 0.025304 0.033182 0.022585 0.031071 0.022829 0.016543 0.017962 0.023002 0.040993 0.012331 0.010899 0.027220 0.036092 0.016441 0.016637 0.041630 0.028153 0.022122 0.016512 0.020467 0.033291 0.170435 0.048252 0.111220

Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   4.46116

((((4: 0.091211, ((((7: 0.004711, (8: 0.004721, 15: 0.004714): 0.002370): 0.015737, 14: 0.015198): 0.001759, 12: 0.044863): 0.026817, (10: 0.004691, 22: 0.004802): 0.049178): 0.039802): 0.098772, 13: 0.273944): 0.017336, ((5: 0.294028, 20: 0.140965): 0.135638, ((11: 0.090230, 16: 0.087077): 0.135755, 19: 0.144292): 0.248339): 0.035576): 0.064017, 17: 0.443009, ((((2: 0.062143, 21: 0.076147): 0.305299, 18: 0.376348): 0.144525, 6: 0.240106, (1: 0.074623, 3: 0.143650): 0.137663): 0.019859, 9: 0.334886): 0.026353);

((((C_jacchus: 0.091211, ((((G_gorilla: 0.004711, (H_sapiens: 0.004721, P_troglody: 0.004714): 0.002370): 0.015737, P_abelii: 0.015198): 0.001759, N_leucogen: 0.044863): 0.026817, (M_mulatta: 0.004691, M_fascicul: 0.004802): 0.049178): 0.039802): 0.098772, O_cuniculu: 0.273944): 0.017336, ((C_porcellu: 0.294028, H_glaber: 0.140965): 0.135638, ((M_musculus: 0.090230, R_norvegic: 0.087077): 0.135755, C_griseus: 0.144292): 0.248339): 0.035576): 0.064017, S_araneus: 0.443009, ((((B_taurus: 0.062143, O_aires: 0.076147): 0.305299, S_scrofa: 0.376348): 0.144525, E_caballus: 0.240106, (A_melanole: 0.074623, C_familiar: 0.143650): 0.137663): 0.019859, M_lucifugu: 0.334886): 0.026353);

Detailed output identifying parameters

kappa (ts/tv) =  3.34977

Parameters in M7 (beta):
 p=  0.35017  q=  0.55891


dN/dS (w) for site classes (K=10)

p:   0.10000  0.10000  0.10000  0.10000  0.10000  0.10000  0.10000  0.10000  0.10000  0.10000
w:   0.00044  0.01012  0.04305  0.10996  0.21663  0.36173  0.53489  0.71608  0.87670  0.98191

dN & dS for each branch

 branch          t       N       S   dN/dS      dN      dS  N*dN  S*dS

  23..24      0.064    936.3    359.7   0.3852   0.0148   0.0384   13.8   13.8
  24..25      0.017    936.3    359.7   0.3852   0.0040   0.0104    3.7    3.7
  25..26      0.099    936.3    359.7   0.3852   0.0228   0.0592   21.4   21.3
  26..4       0.091    936.3    359.7   0.3852   0.0211   0.0547   19.7   19.7
  26..27      0.040    936.3    359.7   0.3852   0.0092   0.0239    8.6    8.6
  27..28      0.027    936.3    359.7   0.3852   0.0062   0.0161    5.8    5.8
  28..29      0.002    936.3    359.7   0.3852   0.0004   0.0011    0.4    0.4
  29..30      0.016    936.3    359.7   0.3852   0.0036   0.0094    3.4    3.4
  30..7       0.005    936.3    359.7   0.3852   0.0011   0.0028    1.0    1.0
  30..31      0.002    936.3    359.7   0.3852   0.0005   0.0014    0.5    0.5
  31..8       0.005    936.3    359.7   0.3852   0.0011   0.0028    1.0    1.0
  31..15      0.005    936.3    359.7   0.3852   0.0011   0.0028    1.0    1.0
  29..14      0.015    936.3    359.7   0.3852   0.0035   0.0091    3.3    3.3
  28..12      0.045    936.3    359.7   0.3852   0.0104   0.0269    9.7    9.7
  27..32      0.049    936.3    359.7   0.3852   0.0114   0.0295   10.6   10.6
  32..10      0.005    936.3    359.7   0.3852   0.0011   0.0028    1.0    1.0
  32..22      0.005    936.3    359.7   0.3852   0.0011   0.0029    1.0    1.0
  25..13      0.274    936.3    359.7   0.3852   0.0633   0.1643   59.2   59.1
  24..33      0.036    936.3    359.7   0.3852   0.0082   0.0213    7.7    7.7
  33..34      0.136    936.3    359.7   0.3852   0.0313   0.0813   29.3   29.3
  34..5       0.294    936.3    359.7   0.3852   0.0679   0.1763   63.6   63.4
  34..20      0.141    936.3    359.7   0.3852   0.0326   0.0845   30.5   30.4
  33..35      0.248    936.3    359.7   0.3852   0.0574   0.1489   53.7   53.6
  35..36      0.136    936.3    359.7   0.3852   0.0314   0.0814   29.4   29.3
  36..11      0.090    936.3    359.7   0.3852   0.0208   0.0541   19.5   19.5
  36..16      0.087    936.3    359.7   0.3852   0.0201   0.0522   18.8   18.8
  35..19      0.144    936.3    359.7   0.3852   0.0333   0.0865   31.2   31.1
  23..17      0.443    936.3    359.7   0.3852   0.1023   0.2657   95.8   95.6
  23..37      0.026    936.3    359.7   0.3852   0.0061   0.0158    5.7    5.7
  37..38      0.020    936.3    359.7   0.3852   0.0046   0.0119    4.3    4.3
  38..39      0.145    936.3    359.7   0.3852   0.0334   0.0867   31.3   31.2
  39..40      0.305    936.3    359.7   0.3852   0.0705   0.1831   66.0   65.9
  40..2       0.062    936.3    359.7   0.3852   0.0144   0.0373   13.4   13.4
  40..21      0.076    936.3    359.7   0.3852   0.0176   0.0457   16.5   16.4
  39..18      0.376    936.3    359.7   0.3852   0.0869   0.2257   81.4   81.2
  38..6       0.240    936.3    359.7   0.3852   0.0555   0.1440   51.9   51.8
  38..41      0.138    936.3    359.7   0.3852   0.0318   0.0826   29.8   29.7
  41..1       0.075    936.3    359.7   0.3852   0.0172   0.0448   16.1   16.1
  41..3       0.144    936.3    359.7   0.3852   0.0332   0.0862   31.1   31.0
  37..9       0.335    936.3    359.7   0.3852   0.0774   0.2008   72.4   72.2


Time used: 2:18:54


Model 8: beta&w>1 (11 categories)


TREE #  1:  ((((4, ((((7, (8, 15)), 14), 12), (10, 22))), 13), ((5, 20), ((11, 16), 19))), 17, ((((2, 21), 18), 6, (1, 3)), 9));   MP score: 1457
lnL(ntime: 40  np: 45):  -9276.247699      +0.000000
  23..24   24..25   25..26   26..4    26..27   27..28   28..29   29..30   30..7    30..31   31..8    31..15   29..14   28..12   27..32   32..10   32..22   25..13   24..33   33..34   34..5    34..20   33..35   35..36   36..11   36..16   35..19   23..17   23..37   37..38   38..39   39..40   40..2    40..21   39..18   38..6    38..41   41..1    41..3    37..9  
 0.062105 0.015090 0.099885 0.091647 0.039217 0.026868 0.000529 0.015732 0.004678 0.002365 0.004697 0.004690 0.015135 0.045923 0.050336 0.004672 0.004782 0.276465 0.036084 0.135429 0.295326 0.141300 0.249618 0.136494 0.090509 0.086808 0.144290 0.449054 0.026419 0.019008 0.145861 0.306604 0.062089 0.075824 0.383329 0.242188 0.137328 0.074486 0.143984 0.340146 3.450752 0.911922 0.478760 1.043960 1.652763
SEs for parameters:
 0.017714 0.009408 0.019673 0.017775 0.012606 0.010040 0.003595 0.006852 0.003556 0.002534 0.003671 0.003375 0.006757 0.012291 0.012772 0.003615 0.003610 0.032914 0.015304 0.025586 0.034612 0.022908 0.032193 0.023133 0.016921 0.018186 0.023554 0.043399 0.012518 0.011048 0.027945 0.037310 0.016485 0.016628 0.044070 0.029757 0.022821 0.016683 0.020649 0.034625 0.183220 0.045247 0.100684 0.395787 0.279206

Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =   4.48699

((((4: 0.091647, ((((7: 0.004678, (8: 0.004697, 15: 0.004690): 0.002365): 0.015732, 14: 0.015135): 0.000529, 12: 0.045923): 0.026868, (10: 0.004672, 22: 0.004782): 0.050336): 0.039217): 0.099885, 13: 0.276465): 0.015090, ((5: 0.295326, 20: 0.141300): 0.135429, ((11: 0.090509, 16: 0.086808): 0.136494, 19: 0.144290): 0.249618): 0.036084): 0.062105, 17: 0.449054, ((((2: 0.062089, 21: 0.075824): 0.306604, 18: 0.383329): 0.145861, 6: 0.242188, (1: 0.074486, 3: 0.143984): 0.137328): 0.019008, 9: 0.340146): 0.026419);

((((C_jacchus: 0.091647, ((((G_gorilla: 0.004678, (H_sapiens: 0.004697, P_troglody: 0.004690): 0.002365): 0.015732, P_abelii: 0.015135): 0.000529, N_leucogen: 0.045923): 0.026868, (M_mulatta: 0.004672, M_fascicul: 0.004782): 0.050336): 0.039217): 0.099885, O_cuniculu: 0.276465): 0.015090, ((C_porcellu: 0.295326, H_glaber: 0.141300): 0.135429, ((M_musculus: 0.090509, R_norvegic: 0.086808): 0.136494, C_griseus: 0.144290): 0.249618): 0.036084): 0.062105, S_araneus: 0.449054, ((((B_taurus: 0.062089, O_aires: 0.075824): 0.306604, S_scrofa: 0.383329): 0.145861, E_caballus: 0.242188, (A_melanole: 0.074486, C_familiar: 0.143984): 0.137328): 0.019008, M_lucifugu: 0.340146): 0.026419);

Detailed output identifying parameters

kappa (ts/tv) =  3.45075

Parameters in M8 (beta&w>1):
  p0=  0.91192  p=  0.47876 q=  1.04396
 (p1=  0.08808) w=  1.65276


dN/dS (w) for site classes (K=11)

p:   0.09119  0.09119  0.09119  0.09119  0.09119  0.09119  0.09119  0.09119  0.09119  0.09119  0.08808
w:   0.00182  0.01804  0.05249  0.10617  0.17990  0.27446  0.39075  0.52996  0.69391  0.88667  1.65277

dN & dS for each branch

 branch          t       N       S   dN/dS      dN      dS  N*dN  S*dS

  23..24      0.062    935.0    361.0   0.4314   0.0151   0.0351   14.2   12.7
  24..25      0.015    935.0    361.0   0.4314   0.0037   0.0085    3.4    3.1
  25..26      0.100    935.0    361.0   0.4314   0.0244   0.0565   22.8   20.4
  26..4       0.092    935.0    361.0   0.4314   0.0223   0.0518   20.9   18.7
  26..27      0.039    935.0    361.0   0.4314   0.0096   0.0222    8.9    8.0
  27..28      0.027    935.0    361.0   0.4314   0.0066   0.0152    6.1    5.5
  28..29      0.001    935.0    361.0   0.4314   0.0001   0.0003    0.1    0.1
  29..30      0.016    935.0    361.0   0.4314   0.0038   0.0089    3.6    3.2
  30..7       0.005    935.0    361.0   0.4314   0.0011   0.0026    1.1    1.0
  30..31      0.002    935.0    361.0   0.4314   0.0006   0.0013    0.5    0.5
  31..8       0.005    935.0    361.0   0.4314   0.0011   0.0027    1.1    1.0
  31..15      0.005    935.0    361.0   0.4314   0.0011   0.0027    1.1    1.0
  29..14      0.015    935.0    361.0   0.4314   0.0037   0.0086    3.5    3.1
  28..12      0.046    935.0    361.0   0.4314   0.0112   0.0260   10.5    9.4
  27..32      0.050    935.0    361.0   0.4314   0.0123   0.0284   11.5   10.3
  32..10      0.005    935.0    361.0   0.4314   0.0011   0.0026    1.1    1.0
  32..22      0.005    935.0    361.0   0.4314   0.0012   0.0027    1.1    1.0
  25..13      0.276    935.0    361.0   0.4314   0.0674   0.1563   63.0   56.4
  24..33      0.036    935.0    361.0   0.4314   0.0088   0.0204    8.2    7.4
  33..34      0.135    935.0    361.0   0.4314   0.0330   0.0765   30.9   27.6
  34..5       0.295    935.0    361.0   0.4314   0.0720   0.1669   67.3   60.3
  34..20      0.141    935.0    361.0   0.4314   0.0345   0.0799   32.2   28.8
  33..35      0.250    935.0    361.0   0.4314   0.0609   0.1411   56.9   50.9
  35..36      0.136    935.0    361.0   0.4314   0.0333   0.0771   31.1   27.9
  36..11      0.091    935.0    361.0   0.4314   0.0221   0.0512   20.6   18.5
  36..16      0.087    935.0    361.0   0.4314   0.0212   0.0491   19.8   17.7
  35..19      0.144    935.0    361.0   0.4314   0.0352   0.0816   32.9   29.4
  23..17      0.449    935.0    361.0   0.4314   0.1095   0.2538  102.4   91.6
  23..37      0.026    935.0    361.0   0.4314   0.0064   0.0149    6.0    5.4
  37..38      0.019    935.0    361.0   0.4314   0.0046   0.0107    4.3    3.9
  38..39      0.146    935.0    361.0   0.4314   0.0356   0.0824   33.2   29.8
  39..40      0.307    935.0    361.0   0.4314   0.0748   0.1733   69.9   62.6
  40..2       0.062    935.0    361.0   0.4314   0.0151   0.0351   14.2   12.7
  40..21      0.076    935.0    361.0   0.4314   0.0185   0.0429   17.3   15.5
  39..18      0.383    935.0    361.0   0.4314   0.0935   0.2167   87.4   78.2
  38..6       0.242    935.0    361.0   0.4314   0.0590   0.1369   55.2   49.4
  38..41      0.137    935.0    361.0   0.4314   0.0335   0.0776   31.3   28.0
  41..1       0.074    935.0    361.0   0.4314   0.0182   0.0421   17.0   15.2
  41..3       0.144    935.0    361.0   0.4314   0.0351   0.0814   32.8   29.4
  37..9       0.340    935.0    361.0   0.4314   0.0829   0.1922   77.5   69.4


Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: A_melanole)

            Pr(w>1)     post mean +- SE for w

     1 I      0.990**       1.645
    14 I      0.595         1.301
    20 G      0.728         1.421
    22 P      0.603         1.310
    32 P      0.665         1.358
    35 T      0.694         1.393
    37 L      0.547         1.261
    68 R      0.941         1.605
    70 V      0.966*        1.626
    91 N      0.658         1.367
   139 D      0.589         1.301
   155 L      0.655         1.354
   156 A      0.626         1.331
   158 G      0.931         1.596
   160 K      0.940         1.604
   164 S      0.889         1.562
   202 K      0.726         1.417
   228 G      0.689         1.389
   240 L      0.848         1.527
   252 S      0.741         1.435
   325 H      0.733         1.428
   330 D      0.926         1.593
   331 A      0.769         1.458
   337 T      0.931         1.597
   381 M      0.560         1.272
   418 T      0.927         1.593
   426 E      0.598         1.310
   432 N      0.647         1.349


Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: A_melanole)

            Pr(w>1)     post mean +- SE for w

     1 I      0.992**       1.526 +- 0.183
    14 I      0.764         1.334 +- 0.336
    19 P      0.543         1.134 +- 0.423
    20 G      0.843         1.402 +- 0.296
    21 T      0.638         1.226 +- 0.385
    22 P      0.772         1.341 +- 0.328
    24 K      0.673         1.257 +- 0.371
    32 P      0.798         1.363 +- 0.337
    35 T      0.827         1.388 +- 0.296
    37 L      0.740         1.314 +- 0.341
    68 R      0.963*        1.505 +- 0.211
    70 V      0.977*        1.515 +- 0.196
    80 T      0.706         1.285 +- 0.357
    91 N      0.816         1.378 +- 0.287
   138 Q      0.594         1.176 +- 0.420
   139 D      0.769         1.340 +- 0.322
   155 L      0.799         1.363 +- 0.323
   156 A      0.786         1.353 +- 0.321
   158 G      0.956*        1.499 +- 0.219
   160 K      0.962*        1.504 +- 0.213
   164 S      0.934         1.479 +- 0.229
   196 T      0.516         1.109 +- 0.428
   200 L      0.578         1.166 +- 0.417
   202 K      0.839         1.398 +- 0.303
   224 G      0.706         1.286 +- 0.356
   226 G      0.575         1.169 +- 0.407
   228 G      0.826         1.386 +- 0.294
   233 Y      0.679         1.263 +- 0.369
   240 L      0.911         1.461 +- 0.250
   252 S      0.854         1.411 +- 0.280
   261 R      0.656         1.232 +- 0.401
   279 T      0.553         1.134 +- 0.437
   311 D      0.696         1.277 +- 0.361
   321 F      0.574         1.158 +- 0.423
   325 H      0.849         1.407 +- 0.283
   330 D      0.955*        1.497 +- 0.215
   331 A      0.867         1.423 +- 0.277
   337 T      0.957*        1.499 +- 0.214
   343 R      0.520         1.111 +- 0.431
   347 M      0.633         1.220 +- 0.390
   351 K      0.656         1.239 +- 0.386
   359 L      0.593         1.162 +- 0.449
   364 T      0.538         1.129 +- 0.425
   381 M      0.747         1.320 +- 0.339
   393 N      0.634         1.223 +- 0.385
   414 S      0.548         1.146 +- 0.411
   415 T      0.525         1.108 +- 0.442
   418 T      0.955*        1.498 +- 0.217
   424 R      0.555         1.144 +- 0.421
   426 E      0.775         1.345 +- 0.319
   432 N      0.797         1.362 +- 0.318



The grid 

p0:   0.050  0.150  0.250  0.350  0.450  0.550  0.650  0.750  0.850  0.950
p :   0.100  0.300  0.500  0.700  0.900  1.100  1.300  1.500  1.700  1.900
q :   0.100  0.300  0.500  0.700  0.900  1.100  1.300  1.500  1.700  1.900
ws:   1.500  2.500  3.500  4.500  5.500  6.500  7.500  8.500  9.500 10.500


Posterior on the grid

p0:   0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.923  0.077
p :   0.000  0.058  0.612  0.329  0.000  0.000  0.000  0.000  0.000  0.000
q :   0.000  0.000  0.033  0.019  0.022  0.061  0.275  0.219  0.134  0.236
ws:   0.969  0.031  0.000  0.000  0.000  0.000  0.000  0.000  0.000  0.000

Time used: 4:00:45
