This folder contains the following seven files:

3438_mapped_loci.LOC is the matrix of genotypes for the 102 progeny, which can be used directly as an input file for MapQTL5. 

3438_mapped_loci.map is the map file providing marker name and position (in cM) for each linkage group. 
It can be used directly as an input file for MapQTL5.

pQTL.qua is the quantitative trait data file for the phenotypic traits. Missing data are encoded as *. 
It can be used directly as an input file for MapQTL5.

eQTLs_253_muscle.qua is the quantitative trait data file for gene expression in muscle tissue under controlled conditions. Missing data are encoded as *. 
It can be used directly as an input file for MapQTL5.

eQTLs_201_brain.qua is the quantitative trait data file for gene expression in brain tissue under controlled conditions. Missing data are encoded as *. 
It can be used directly as an input file for MapQTL5.

eQTLs_92_parallel.qua is the quantitative trait data file for gene expression in liver tissue under natural conditions. Missing data are encoded as *. 
It can be used directly as an input file for MapQTL5.

3438_mapped_loci_sex_SNPassoc is a genotype matrix for the GWAS of sex. 
It can be used directly as an input file for the R package SNPassoc.
