| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-06 02:21:46.273104 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 8771108 |
|---|
| sample_rate | None |
|---|
| max_coverage | 216 |
|---|
| mean_coverage | 3.9384356320631784 |
|---|
| min_coverage | 1.5753742528252714 |
|---|
| mean_insert | 250 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 200000 |
|---|
| n_analysed_reads | 200000 |
|---|
| n_too_short | 2 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 20 |
|---|
| n_low_cov | 3515 |
|---|
| n_zero_cov | 13807 |
|---|
| n_accepted_reads | 182656 |
|---|
| n_without_junc | 77917 |
|---|
| n_with_junc | 21244 |
|---|
| mean_readlen | 149.9915579011913 |
|---|
| cs_start | 1034 |
|---|
| unobs_fraction | 0.06825400056483644 |
|---|
| raw_fraction | - 0.2044882030264244
- 0.20897057085324727
|
|---|
| adj_fraction | - 0.23884313143107203
- 0.2429346144089379
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 29378 |
|---|
|
|---|