| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-05 22:25:48.655351 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 6198264 |
|---|
| sample_rate | None |
|---|
| max_coverage | 548 |
|---|
| mean_coverage | 10.488319219213588 |
|---|
| min_coverage | 4.1953276876854355 |
|---|
| mean_insert | 150 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 1000000 |
|---|
| n_analysed_reads | 1000000 |
|---|
| n_too_short | 0 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 327 |
|---|
| n_low_cov | 13693 |
|---|
| n_zero_cov | 51770 |
|---|
| n_accepted_reads | 934210 |
|---|
| n_without_junc | 474227 |
|---|
| n_with_junc | 22746 |
|---|
| mean_readlen | 140.48797272561845 |
|---|
| cs_start | 4492 |
|---|
| unobs_fraction | 0.012962095191564993 |
|---|
| raw_fraction | - 0.043837693421034274
- 0.04498142327121057
|
|---|
| adj_fraction | - 0.04728087695501401
- 0.04845979395024634
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 47576 |
|---|
|
|---|