| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-05 23:36:03.365244 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 3253953 |
|---|
| sample_rate | None |
|---|
| max_coverage | 200 |
|---|
| mean_coverage | 3.9455886890893472 |
|---|
| min_coverage | 1.5782354756357388 |
|---|
| mean_insert | 300 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 200000 |
|---|
| n_analysed_reads | 200000 |
|---|
| n_too_short | 18 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 7 |
|---|
| n_low_cov | 2923 |
|---|
| n_zero_cov | 13040 |
|---|
| n_accepted_reads | 184012 |
|---|
| n_without_junc | 80247 |
|---|
| n_with_junc | 19119 |
|---|
| mean_readlen | 149.99232658739646 |
|---|
| cs_start | 986 |
|---|
| unobs_fraction | 0.12342106454974622 |
|---|
| raw_fraction | - 0.18312259523346905
- 0.1876074117285481
|
|---|
| adj_fraction | - 0.226194154900618
- 0.23051313240158175
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 24214 |
|---|
|
|---|