| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-06 00:17:53.239507 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 3229084 |
|---|
| sample_rate | None |
|---|
| max_coverage | 423 |
|---|
| mean_coverage | 7.071148700020443 |
|---|
| min_coverage | 2.8284594800081773 |
|---|
| mean_insert | 300 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 500000 |
|---|
| n_analysed_reads | 500000 |
|---|
| n_too_short | 42 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 87 |
|---|
| n_low_cov | 6308 |
|---|
| n_zero_cov | 32655 |
|---|
| n_accepted_reads | 460908 |
|---|
| n_without_junc | 200630 |
|---|
| n_with_junc | 47997 |
|---|
| mean_readlen | 149.98833389743723 |
|---|
| cs_start | 2496 |
|---|
| unobs_fraction | 0.12252295842472616 |
|---|
| raw_fraction | - 0.18791889057307432
- 0.19059220649988334
|
|---|
| adj_fraction | - 0.23137876621553352
- 0.23395665604021867
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 61034 |
|---|
|
|---|