| mode | kmer |
|---|
| runtime_info | | qc3C_version | qc3C 0.5rc10 |
|---|
| run_timestamp | 2021-02-06 00:09:07.712901 |
|---|
|
|---|
| input_args | | kmer_db | lib.jf |
|---|
| kmer_size | 24 |
|---|
| read_list | |
|---|
| enzymes | |
|---|
| seed | 3119798 |
|---|
| sample_rate | None |
|---|
| max_coverage | 216 |
|---|
| mean_coverage | 3.9156245867285175 |
|---|
| min_coverage | 1.566249834691407 |
|---|
| mean_insert | 500 |
|---|
| max_freq_quantile | 0.9 |
|---|
| max_obs | None |
|---|
| num_sample | 100 |
|---|
| frac_sample | 1 |
|---|
|
|---|
| n_parsed_reads | 200000 |
|---|
| n_analysed_reads | 200000 |
|---|
| n_too_short | 4 |
|---|
| n_no_flank | 0 |
|---|
| n_ambiguous | 0 |
|---|
| n_high_cov | 24 |
|---|
| n_low_cov | 3068 |
|---|
| n_zero_cov | 13764 |
|---|
| n_accepted_reads | 183140 |
|---|
| n_without_junc | 76346 |
|---|
| n_with_junc | 23062 |
|---|
| mean_readlen | 149.9934094135634 |
|---|
| cs_start | 1023 |
|---|
| unobs_fraction | 0.4768132383716819 |
|---|
| raw_fraction | - 0.22153735467537955
- 0.22621957613855134
|
|---|
| adj_fraction | - 0.4608241020037441
- 0.46824162304644457
|
|---|
| digestion | | cutsites | | GATC | | name | DpnII |
|---|
| site | GATC |
|---|
| site_len | 4 |
|---|
|
|---|
|
|---|
| junctions | | GATCGATC | | enz5p | DpnII |
|---|
| enz3p | DpnII |
|---|
| junction | GATCGATC |
|---|
| vestigial | GATC |
|---|
| junc_len | 8 |
|---|
| vest_len | 4 |
|---|
| pattern | GATCGATC |
|---|
| cross | True |
|---|
|
|---|
|
|---|
|
|---|
| junction_frequency | | DpnII/DpnII GATCGATC | 28906 |
|---|
|
|---|